RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 026316
         (240 letters)



>d1wh9a_ d.52.3.1 (A:) Ribosomal protein S3 N-terminal domain {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 92

 Score =  118 bits (298), Expect = 3e-35
 Identities = 70/87 (80%), Positives = 72/87 (82%)

Query: 14  DGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVV 73
              F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VV
Sbjct: 5   SSGFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVV 64

Query: 74  QKRFKFPENSVELYAEKVNNRGLCAIA 100
           QKRF FPE SVELYAEKV  RG    +
Sbjct: 65  QKRFGFPEGSVELYAEKVATRGSGPSS 91


>d2uubc2 d.53.1.1 (C:107-207) Ribosomal protein S3 C-terminal domain
           {Thermus thermophilus [TaxId: 274]}
          Length = 101

 Score = 67.6 bits (165), Expect = 2e-15
 Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 9/106 (8%)

Query: 93  NRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRA 152
           N  L A   A+ +  ++    AVRRA    ++ +MESGAKG         KVIVSG++  
Sbjct: 2   NPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKGA--------KVIVSGRIGG 53

Query: 153 QRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIML 198
                 ++     +     +   ID          GVLG+K  I L
Sbjct: 54  AEQARTEWAAQGRVPL-HTLRANIDYGFALARTTYGVLGVKAYIFL 98


>d2qalc2 d.53.1.1 (C:106-206) Ribosomal protein S3 C-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 101

 Score = 51.7 bits (124), Expect = 1e-09
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 11/103 (10%)

Query: 96  LCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLR-AQR 154
           L A   A+S+  +L   +  RRA    ++  M  GAKG         KV VSG+L  A+ 
Sbjct: 5   LDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGI--------KVEVSGRLGGAEI 56

Query: 155 AKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 197
           A++  +++G +       +  ID          GV+G+KV I 
Sbjct: 57  ARTEWYREGRVPLHTLRAD--IDYNTSEAHTTYGVIGVKVWIF 97


>d2uubc1 d.52.3.1 (C:2-106) Ribosomal protein S3 N-terminal domain
          {Thermus thermophilus [TaxId: 274]}
          Length = 105

 Score = 37.1 bits (86), Expect = 2e-04
 Identities = 13/54 (24%), Positives = 22/54 (40%)

Query: 25 LTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78
          L +EL   G + V++        + +   +   V+G  G RIR L   + K   
Sbjct: 42 LEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIRVLREELAKLTG 95


>d2qalc1 d.52.3.1 (C:1-105) Ribosomal protein S3 N-terminal domain
          {Escherichia coli [TaxId: 562]}
          Length = 105

 Score = 35.2 bits (81), Expect = 0.001
 Identities = 15/54 (27%), Positives = 24/54 (44%)

Query: 25 LTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78
          LT+ELA+   S + +        + I   R   V+G+KG  + +L  VV     
Sbjct: 42 LTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAG 95


>d2a3la1 c.1.9.1 (A:212-839) AMP deaminase (AMPD), catalytic domain
           {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 628

 Score = 29.1 bits (65), Expect = 0.46
 Identities = 7/30 (23%), Positives = 13/30 (43%)

Query: 14  DGVFFAELNEVLTRELAEDGYSGVEVRVTP 43
            G F  E+ + +  +L    Y   E R++ 
Sbjct: 276 QGRFLGEITKQVFSDLEASKYQMAEYRISI 305


>d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260
          {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 250

 Score = 26.3 bits (57), Expect = 3.2
 Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 1/31 (3%)

Query: 11 FVADGVFFAELNEVLTRELAEDGYSGVEVRV 41
          + AD V        L   LA  G   VE+R 
Sbjct: 11 YGADLVRSRGQASFL-PLLAMAGAQRVELRE 40


>d1pd3a_ a.30.3.1 (A:) Nonstructural protein ns2, Nep, M1-binding
          domain {Influenza A virus [TaxId: 11320]}
          Length = 54

 Score = 23.3 bits (50), Expect = 7.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)

Query: 59 LGEKGRRIRELTSVVQKRFKFPENSVE 85
          LG+K   IR L   V+ R K  ENS E
Sbjct: 7  LGQKFEEIRWLIEEVRHRLKITENSFE 33


>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 91

 Score = 24.0 bits (52), Expect = 8.2
 Identities = 10/40 (25%), Positives = 18/40 (45%)

Query: 42 TPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPE 81
           PV  E+ +     + V+G+KG  IR++    +     P 
Sbjct: 8  VPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPA 47


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.380 

Gapped
Lambda     K      H
   0.267   0.0622    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 855,403
Number of extensions: 38994
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 22
Length of query: 240
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,268,006
Effective search space: 199076942
Effective search space used: 199076942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)