Query 026317
Match_columns 240
No_of_seqs 292 out of 1655
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 06:27:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026317.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026317hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0141 Isovaleryl-CoA dehydro 100.0 1.1E-41 2.4E-46 279.0 17.3 183 53-235 39-229 (421)
2 KOG0139 Short-chain acyl-CoA d 100.0 7.3E-41 1.6E-45 277.8 11.9 183 54-237 36-222 (398)
3 KOG0138 Glutaryl-CoA dehydroge 100.0 2.2E-39 4.8E-44 264.8 19.0 220 16-235 16-237 (432)
4 KOG0140 Medium-chain acyl-CoA 100.0 8.3E-40 1.8E-44 267.8 14.4 184 52-236 25-215 (408)
5 PLN02526 acyl-coenzyme A oxida 100.0 1.1E-37 2.4E-42 277.5 24.8 207 29-236 3-210 (412)
6 cd01151 GCD Glutaryl-CoA dehyd 100.0 1.1E-36 2.4E-41 269.0 24.0 186 51-236 9-194 (386)
7 PRK09463 fadE acyl-CoA dehydro 100.0 2E-36 4.3E-41 283.0 22.0 201 16-236 58-278 (777)
8 PRK03354 crotonobetainyl-CoA d 100.0 2.8E-35 6.1E-40 259.6 22.3 186 51-238 1-191 (380)
9 PRK13026 acyl-CoA dehydrogenas 100.0 2.6E-35 5.7E-40 274.7 22.4 201 16-236 57-277 (774)
10 TIGR03203 pimD_small pimeloyl- 100.0 6.1E-35 1.3E-39 257.1 21.5 182 53-236 2-190 (378)
11 PRK12341 putative acyl-CoA deh 100.0 1.2E-34 2.6E-39 255.6 22.8 184 51-237 1-191 (381)
12 cd01161 VLCAD Very long chain 100.0 8.8E-35 1.9E-39 258.7 22.0 202 16-235 3-214 (409)
13 PLN02519 isovaleryl-CoA dehydr 100.0 1.2E-34 2.6E-39 257.5 22.8 185 51-235 22-212 (404)
14 cd01156 IVD Isovaleryl-CoA deh 100.0 1.8E-34 4E-39 253.9 22.3 182 55-236 2-187 (376)
15 cd01157 MCAD Medium chain acyl 100.0 1.5E-34 3.3E-39 254.7 21.7 181 55-236 1-188 (378)
16 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 3.8E-34 8.3E-39 251.7 21.9 182 55-237 1-187 (372)
17 PTZ00461 isovaleryl-CoA dehydr 100.0 3.8E-34 8.2E-39 254.7 21.9 182 53-236 35-218 (410)
18 TIGR03204 pimC_large pimeloyl- 100.0 3.5E-34 7.6E-39 253.7 21.4 183 52-236 1-193 (395)
19 cd01160 LCAD Long chain acyl-C 100.0 5.5E-34 1.2E-38 250.6 21.5 178 58-236 2-184 (372)
20 cd01162 IBD Isobutyryl-CoA deh 100.0 7.7E-34 1.7E-38 250.0 22.1 181 55-236 1-184 (375)
21 cd01158 SCAD_SBCAD Short chain 100.0 8.8E-33 1.9E-37 242.9 21.1 182 58-239 2-189 (373)
22 cd01152 ACAD_fadE6_17_26 Putat 100.0 8.4E-32 1.8E-36 237.5 16.8 177 58-236 2-189 (380)
23 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 4.5E-31 9.8E-36 233.9 19.6 181 59-239 3-206 (394)
24 COG1960 CaiA Acyl-CoA dehydrog 100.0 1.3E-30 2.7E-35 230.8 19.2 183 53-235 3-197 (393)
25 cd01153 ACAD_fadE5 Putative ac 100.0 1.7E-30 3.7E-35 231.1 19.6 171 63-235 2-193 (407)
26 PTZ00456 acyl-CoA dehydrogenas 100.0 1.6E-30 3.5E-35 240.3 19.2 179 57-236 58-258 (622)
27 PLN02636 acyl-coenzyme A oxida 100.0 1.5E-30 3.3E-35 242.5 18.4 221 9-236 16-258 (686)
28 KOG0137 Very-long-chain acyl-C 100.0 1.3E-30 2.7E-35 229.5 13.3 181 54-236 75-269 (634)
29 cd01163 DszC Dibenzothiophene 100.0 1.8E-29 3.9E-34 222.3 19.1 166 66-236 3-169 (377)
30 PTZ00457 acyl-CoA dehydrogenas 100.0 5.8E-29 1.3E-33 224.4 19.7 180 16-236 19-211 (520)
31 PLN02876 acyl-CoA dehydrogenas 100.0 5.4E-29 1.2E-33 238.2 20.3 184 53-236 400-625 (822)
32 PLN02312 acyl-CoA oxidase 100.0 8.1E-28 1.8E-32 223.9 17.2 230 1-233 1-261 (680)
33 cd01154 AidB Proteins involved 99.9 1.8E-26 3.9E-31 205.9 15.5 163 68-236 39-219 (418)
34 cd01159 NcnH Naphthocyclinone 99.9 2.5E-24 5.5E-29 189.2 14.5 154 72-239 8-165 (370)
35 PF02771 Acyl-CoA_dh_N: Acyl-C 99.9 5E-22 1.1E-26 145.8 8.7 112 56-167 1-113 (113)
36 cd00567 ACAD Acyl-CoA dehydrog 99.9 2.4E-20 5.3E-25 160.9 17.2 139 58-239 2-146 (327)
37 KOG1469 Predicted acyl-CoA deh 99.8 7.2E-21 1.6E-25 154.3 9.2 141 96-236 37-189 (392)
38 cd01150 AXO Peroxisomal acyl-C 99.8 1.8E-20 3.9E-25 173.9 12.6 121 114-234 80-211 (610)
39 PRK11561 isovaleryl CoA dehydr 99.8 7.6E-20 1.6E-24 166.4 16.2 139 89-235 89-243 (538)
40 PTZ00460 acyl-CoA dehydrogenas 99.8 4.5E-19 9.7E-24 164.9 10.5 100 135-234 94-204 (646)
41 PLN02443 acyl-coenzyme A oxida 99.8 2.8E-18 6.2E-23 159.9 10.8 99 137-235 100-209 (664)
42 PF02770 Acyl-CoA_dh_M: Acyl-C 99.7 9.6E-18 2.1E-22 105.7 7.0 52 171-222 1-52 (52)
43 KOG0135 Pristanoyl-CoA/acyl-Co 99.7 3E-17 6.5E-22 144.5 8.9 212 21-236 5-235 (661)
44 KOG0136 Acyl-CoA oxidase [Lipi 98.9 2.8E-09 6.1E-14 96.5 7.7 103 133-235 108-221 (670)
45 TIGR02309 HpaB-1 4-hydroxyphen 98.1 1.7E-05 3.6E-10 72.1 10.2 88 148-236 119-222 (477)
46 PF11794 HpaB_N: 4-hydroxyphen 94.7 0.23 5E-06 41.7 8.4 83 154-236 123-216 (264)
47 PF14749 Acyl-CoA_ox_N: Acyl-c 92.1 0.079 1.7E-06 39.2 1.5 33 136-168 92-124 (125)
48 COG2368 Aromatic ring hydroxyl 91.3 0.67 1.5E-05 41.9 6.5 87 150-236 125-225 (493)
49 TIGR02310 HpaB-2 4-hydroxyphen 89.9 0.59 1.3E-05 43.1 5.1 83 154-236 136-229 (519)
50 PF01726 LexA_DNA_bind: LexA D 47.5 75 0.0016 20.4 5.2 50 54-103 3-58 (65)
51 PF13051 DUF3912: Protein of u 38.9 80 0.0017 19.8 3.9 36 197-232 2-37 (68)
52 PHA02095 hypothetical protein 31.6 35 0.00076 22.5 1.6 15 193-207 25-39 (84)
53 PF02084 Bindin: Bindin; Inte 28.5 1.6E+02 0.0035 24.1 5.2 64 84-166 98-163 (238)
54 PF04115 Ureidogly_hydro: Urei 26.2 2.7E+02 0.0058 21.5 6.1 39 201-239 80-121 (165)
55 TIGR03826 YvyF flagellar opero 24.6 2.5E+02 0.0054 21.1 5.4 47 57-103 26-74 (137)
56 cd08816 CARD_RIG-I_1 Caspase a 20.0 3.1E+02 0.0066 18.9 4.9 38 57-94 2-39 (89)
No 1
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-41 Score=279.00 Aligned_cols=183 Identities=32% Similarity=0.456 Sum_probs=174.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCC--CHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccC
Q 026317 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEF--PFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD 129 (240)
Q Consensus 53 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~ 129 (240)
+.+++|++.+++.+++|+.+++.|++.++|+.+.+ .+++|+++.+.|++|+ .|++|||.|.+....++++||++|+.
T Consensus 39 ~g~~~e~~~~r~sv~kF~qeelaP~a~eidk~n~~~~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivmEE~sra~ 118 (421)
T KOG0141|consen 39 FGLSDEQDQLRESVRKFFQEELAPHASEIDKANEFKDLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVMEEISRAS 118 (421)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhcchhhhhhhcCCcchHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHHHHHHhhc
Confidence 44899999999999999999999999999999999 5789999999999999 99999999999999999999999999
Q ss_pred CcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCC
Q 026317 130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (240)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~ 209 (240)
..+++.++.|.+++..-|.+.|+++|+++|||.+.+|+.++++|||||++|||+.++.++|++++++|+|||.|.||||+
T Consensus 119 g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~g~~yiLNGsK~witNG 198 (421)
T KOG0141|consen 119 GGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKKGDDYILNGSKFWITNG 198 (421)
T ss_pred CCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceecCCcEEecCcEEEEecC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCC-----CCCeeEEEEeCC
Q 026317 210 TFADVLVIFARNTT-----TNQINGYANQSI 235 (240)
Q Consensus 210 ~~Ad~~~v~a~~~~-----~~~~~~flVp~~ 235 (240)
+.||.++|.|+|+. ..|+++|+|++.
T Consensus 199 ~~advliVyAkTd~~a~~~~hGIt~FiVEkg 229 (421)
T KOG0141|consen 199 PDADVLIVYAKTDHSAVPPSHGITAFIVEKG 229 (421)
T ss_pred CCCcEEEEEEecCCCCCCCcCceEEEEEcCC
Confidence 99999999999853 368999999864
No 2
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=7.3e-41 Score=277.81 Aligned_cols=183 Identities=36% Similarity=0.516 Sum_probs=174.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcc
Q 026317 54 LLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASC 132 (240)
Q Consensus 54 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~ 132 (240)
.+++++.++++.+|+|+.+.+.|.+++.|++.++|..+++.+.++|++++ +|++|||.|.++..+++++||+++.|+++
T Consensus 36 ~l~E~e~~l~~tvrkfa~~~i~Plv~~mD~~~~~~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~sv 115 (398)
T KOG0139|consen 36 ILSETEQMLQKTVRKFAQEEIKPLVREMDRESRYPASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDASV 115 (398)
T ss_pred hcCcHHHHHHHHHHHHHHHhcchHHHhhhhhccCCHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccCccc
Confidence 37899999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCCCC
Q 026317 133 STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFA 212 (240)
Q Consensus 133 ~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~A 212 (240)
++++.+|+.+...+|..||+++||++|+|.+ .|+.+++||++||++|||+..+.|+|+++|+.|+|||+|.||||+..|
T Consensus 116 ~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~-~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~~A 194 (398)
T KOG0139|consen 116 GVIVDVQNTLYLPLIIQFGTEEQKEKYLPKL-TGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNAGEA 194 (398)
T ss_pred eeEEEecccccchHHHHhCcHHHHhhhcchh-hccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCCccc
Confidence 9999999999999999999999999888875 578899999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEeCCC---CCeeEEEEeCCce
Q 026317 213 DVLVIFARNTTT---NQINGYANQSIKF 237 (240)
Q Consensus 213 d~~~v~a~~~~~---~~~~~flVp~~~~ 237 (240)
++++|+|.++.. .|+++|+||+++-
T Consensus 195 ~~~lVfan~d~~~~~Kgit~fiV~rd~~ 222 (398)
T KOG0139|consen 195 DWFLVFANADPSKGYKGITCFIVPRDTP 222 (398)
T ss_pred ceEEEEEecChhhccCceeEEEeeCCCC
Confidence 999999998543 6899999999864
No 3
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-39 Score=264.82 Aligned_cols=220 Identities=39% Similarity=0.546 Sum_probs=205.7
Q ss_pred ccccccCCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHH
Q 026317 16 ARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKL 95 (240)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l 95 (240)
.++.+...+.+.....++.+.+.+.+|+...|+..+...|+++++.+++.+|+++++++.|+..++.+...|+.++..+|
T Consensus 16 ~rs~~s~l~p~e~g~r~~s~~~~s~~P~f~qD~~~l~dqLT~dE~air~~~Reycq~~l~Prvtea~r~e~F~~~i~pem 95 (432)
T KOG0138|consen 16 LRSWVSSLAPTERGGRTQSQLSKSSRPEFWQDPLVLEDQLTEDEIAIRDTFREYCQERLMPRVTEANRNEVFDREIIPEM 95 (432)
T ss_pred eeehhhcCchhhhccccccccccccCCccccchhhhhhhcCHHHHHHHHHHHHHHHHHhhhHHHHHhhhccCChhhhhhh
Confidence 44556666677777677888888889999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcCCCccccCCCCCCCHHHHHHHHHHHHccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEee
Q 026317 96 GALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALT 175 (240)
Q Consensus 96 ~~~Gl~~l~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~t 175 (240)
..+|++|...+-||-.|.|...+..+..|+.|.|.+....+++|.++++.+|..+|+++||++|||.+++|+.++||++|
T Consensus 96 GsmGvlG~tikGYGCaG~S~vaygl~~rEveRVDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLT 175 (432)
T KOG0138|consen 96 GSMGVLGPTIKGYGCAGVSSVAYGLLAREVERVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLT 175 (432)
T ss_pred hccccccCcccCcCCCchHHHHHHHHHHHHHHhhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEecc
Confidence 99999998889999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCCCceEEEEeCCE--EEEeeeEeeecCCCCCCEEEEEEEeCCCCCeeEEEEeCC
Q 026317 176 EPAYGSDASALNTTATKVEGG--WILEGQKRWIGNSTFADVLVIFARNTTTNQINGYANQSI 235 (240)
Q Consensus 176 Ep~~Gsd~~~~~t~a~~~~~g--~~LnG~K~~vs~~~~Ad~~~v~a~~~~~~~~~~flVp~~ 235 (240)
||++|||..++.|+|+++.++ |.|||+|+||+|++.||+++|+||++.++.+..|+|+++
T Consensus 176 EPn~GSdpsgmeT~At~~e~~ktyklNGsKtWI~nsp~aDl~vvwAr~~t~n~I~GFi~~k~ 237 (432)
T KOG0138|consen 176 EPNHGSDPSGMETRATYDESNKTYKLNGSKTWITNSPMADLFVVWARCETDNKIRGFILEKG 237 (432)
T ss_pred CCCCCCCcccccceeEEccCCceEEECCeeeeecCCcccceEEEEEecccCCceeeEEEecC
Confidence 999999999999999999887 999999999999999999999999976778999999875
No 4
>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=8.3e-40 Score=267.77 Aligned_cols=184 Identities=29% Similarity=0.439 Sum_probs=176.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCC
Q 026317 52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA 130 (240)
Q Consensus 52 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~ 130 (240)
+|.|+++|.++++.+++|..+++.|.+.++|+.+++|.+++++..++|+.+. +|+.|||.|++.++.+.+.|+|+.+|.
T Consensus 25 sf~L~e~qke~q~~A~kFa~~e~~P~aae~Dk~ge~P~~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~LayGCt 104 (408)
T KOG0140|consen 25 SFGLTEDQKEFQEAARKFAKDEMIPNAAEYDKSGEFPWEIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFEALAYGCT 104 (408)
T ss_pred ccCcchHHHHHHHHHHHHHHHhhccchhhhcccCCCcHHHHHHHHHcccCcccCccccCCCCchhHHHHHHHHHHHccch
Confidence 5779999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred cchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCC
Q 026317 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210 (240)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~ 210 (240)
++...+..| +++.++|..+|+++||++||++++....+++.++|||++|||+.++.|+|++.+|.|+|||+|.||||+.
T Consensus 105 g~~~~I~~~-~l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawItg~G 183 (408)
T KOG0140|consen 105 GIQTAISIH-NLAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWITGAG 183 (408)
T ss_pred hHHHHHhcc-chhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeeecCC
Confidence 999888877 5899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCC------CCeeEEEEeCCc
Q 026317 211 FADVLVIFARNTTT------NQINGYANQSIK 236 (240)
Q Consensus 211 ~Ad~~~v~a~~~~~------~~~~~flVp~~~ 236 (240)
+|+|++|+||++++ +++++|+|+.++
T Consensus 184 ~anwyfVlaRtd~~pk~p~~Kaft~fiVe~dT 215 (408)
T KOG0140|consen 184 HANWYFVLARTDPDPKTPAGKAFTAFIVEGDT 215 (408)
T ss_pred ccceEEEEEecCCCCCCCCCcceEEEEEeCCC
Confidence 99999999998653 469999999875
No 5
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=1.1e-37 Score=277.45 Aligned_cols=207 Identities=84% Similarity=1.320 Sum_probs=190.1
Q ss_pred cccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-cccc
Q 026317 29 SVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKG 107 (240)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~ 107 (240)
+..||+..|.+.+||.-.+++.|+..++++++++++.+++|+.+.+.|...+.++...+|.++|++|.+.||+++ + ++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~v-~~ 81 (412)
T PLN02526 3 SVAFPQATPASIFPPSVSDYYQFDDLLTPEEQALRKRVRECMEKEVAPIMTEYWEKAEFPFHIIPKLGSLGIAGGTI-KG 81 (412)
T ss_pred ccccccCCCCCCCChhhccccccccCCCHHHHHHHHHHHHHHHHhcccchHHHHHhCCCCHHHHHHHHHCCCCcCcc-cc
Confidence 567899999999998888998899999999999999999999999998877777778899999999999999999 7 99
Q ss_pred CCCCCCCHHHHHHHHHHHHccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCc
Q 026317 108 YGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALN 187 (240)
Q Consensus 108 ~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~ 187 (240)
|||.|+++.+++.++|+++++|++++.++.+|..++...+..+|+++||++|++++++|+.++++++|||+.|||+..+.
T Consensus 82 ~GG~G~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~ 161 (412)
T PLN02526 82 YGCPGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLN 161 (412)
T ss_pred cCCCCcCHHHHHHHHHHHHhhCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCe
Confidence 99999999999999999999999877666667656666788999999999999999999999999999999999999999
Q ss_pred eEEEEeCCEEEEeeeEeeecCCCCCCEEEEEEEeCCCCCeeEEEEeCCc
Q 026317 188 TTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYANQSIK 236 (240)
Q Consensus 188 t~a~~~~~g~~LnG~K~~vs~~~~Ad~~~v~a~~~~~~~~~~flVp~~~ 236 (240)
|+|++++|||+|||+|.||||+..|||++|.+++++++++++|+||+++
T Consensus 162 t~a~~~~gg~~lnG~K~~vs~~~~Ad~~lv~a~~~~~~~~~~flV~~~~ 210 (412)
T PLN02526 162 TTATKVEGGWILNGQKRWIGNSTFADVLVIFARNTTTNQINGFIVKKGA 210 (412)
T ss_pred eEEEEECCEEEEEEEEeeecCCCccCEEEEEEEeCCCCCeEEEEEcCCC
Confidence 9999999999999999999999999999999998655678999999865
No 6
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=1.1e-36 Score=269.04 Aligned_cols=186 Identities=46% Similarity=0.724 Sum_probs=173.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCCccccCCCCCCCHHHHHHHHHHHHccCC
Q 026317 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDA 130 (240)
Q Consensus 51 m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l~p~~~GG~g~~~~~~~~v~e~la~~~~ 130 (240)
|++.++++++++++.+++|+++.+.|.+.+.++.+.+|.++|++|.+.||++++|++|||.|+++.++..++|++++.|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~ 88 (386)
T cd01151 9 LDDLLTEEERAIRDTAREFCQEELAPRVLEAYREEKFDRKIIEEMGELGLLGATIKGYGCAGLSSVAYGLIAREVERVDS 88 (386)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcCccHHHHHHhCCCCHHHHHHHHHCCCCccCccccCCCCCCHHHHHHHHHHHHhhCh
Confidence 78889999999999999999999999988888888899999999999999999889999999999999999999999999
Q ss_pred cchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCC
Q 026317 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210 (240)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~ 210 (240)
++++++.+|..++...+..+|+++|+++|++++++|+.++|+++|||++|||+..+.|+|++++|||+|||+|.||||+.
T Consensus 89 s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~~~ 168 (386)
T cd01151 89 GYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNSP 168 (386)
T ss_pred hHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEECCEEEEEEEEEeecCCC
Confidence 98877767765666678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCCCCeeEEEEeCCc
Q 026317 211 FADVLVIFARNTTTNQINGYANQSIK 236 (240)
Q Consensus 211 ~Ad~~~v~a~~~~~~~~~~flVp~~~ 236 (240)
.|||++|.|++++++++++|+||++.
T Consensus 169 ~Ad~~lv~ar~~~~~~~~~flVp~~~ 194 (386)
T cd01151 169 IADVFVVWARNDETGKIRGFILERGM 194 (386)
T ss_pred cCCEEEEEEEECCCCcEEEEEEcCCC
Confidence 99999999998766678999999874
No 7
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=2e-36 Score=283.02 Aligned_cols=201 Identities=26% Similarity=0.282 Sum_probs=169.4
Q ss_pred ccccccCCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHH-HHHHHHhhccccHHHHHHhCCCCHHHHHH
Q 026317 16 ARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMK-VRECMEKEIAPIMAEYWEKAEFPFHVIPK 94 (240)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 94 (240)
++++|.|+|+|+.+.++|++. +++|++++++. +++|+.. + ....+.++.+.+|+++|++
T Consensus 58 ~~~lF~G~~~~~~l~~~p~~~------------------Ls~ee~~~~d~~v~~l~~~-~-~~~~~~~~~~~~P~e~w~~ 117 (777)
T PRK09463 58 EGELFSGKPDWKKLLNYPKPT------------------LTAEEQAFLDGPVEELCRM-V-NDWQITHELADLPPEVWQF 117 (777)
T ss_pred hhhhcCCCCChHHhcCCCCCC------------------CCHHHHHHHHHHHHHHHHH-H-HHHHHhccccCCCHHHHHH
Confidence 788999999999999888764 57889999886 7776552 2 1112222347899999999
Q ss_pred HHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchHHHHhhhhHHH-HHHhccCCHHHHHhhchhhhcCCceEEE
Q 026317 95 LGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAM-LTIALCGSEEQKQKYLPSLAQLNTIACW 172 (240)
Q Consensus 95 l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~-~~l~~~g~~~~~~~~l~~l~~G~~~~~~ 172 (240)
|++.||+++ +|++|||.|++..+++.++|++++.|.+++..+.+|++++. .+|..+|+++||++|||++++|+.++|+
T Consensus 118 L~e~G~~gl~IPeeyGG~Gls~~~~a~v~eeLg~~~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~af 197 (777)
T PRK09463 118 IKEHGFFGMIIPKEYGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCF 197 (777)
T ss_pred HHHCCCCcCCCchhhCCCCCCHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEE
Confidence 999999999 99999999999999999999999999887776777776664 4788999999999999999999999999
Q ss_pred EeeCCCCCCCcCCCceEE-----EEeCC---EEEEeeeEeeecCCCCCCEEEEEEEe-CC--------CCCeeEEEEeCC
Q 026317 173 ALTEPAYGSDASALNTTA-----TKVEG---GWILEGQKRWIGNSTFADVLVIFARN-TT--------TNQINGYANQSI 235 (240)
Q Consensus 173 a~tEp~~Gsd~~~~~t~a-----~~~~~---g~~LnG~K~~vs~~~~Ad~~~v~a~~-~~--------~~~~~~flVp~~ 235 (240)
++|||++|||+..++|++ .++++ ||+|||+|.||||+..||+++|++++ ++ +.++++|+||++
T Consensus 198 AlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLNG~K~~IT~a~~Ad~l~V~ar~~dp~~~~g~~~~~Git~fLVp~d 277 (777)
T PRK09463 198 ALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLTWNKRYITLAPIATVLGLAFKLYDPDGLLGDKEDLGITCALIPTD 277 (777)
T ss_pred EecCCCcCCCcccccccceeeeeeecCCcccceEEEEEEEeeCCCCccCEEEEEEEecCcccccCCCCCCceEEEEEECC
Confidence 999999999999887654 34555 69999999999999999999999985 21 247999999975
Q ss_pred c
Q 026317 236 K 236 (240)
Q Consensus 236 ~ 236 (240)
.
T Consensus 278 ~ 278 (777)
T PRK09463 278 T 278 (777)
T ss_pred C
Confidence 3
No 8
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.8e-35 Score=259.57 Aligned_cols=186 Identities=23% Similarity=0.242 Sum_probs=165.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhc-cccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHcc
Q 026317 51 FDDLLTSEEQAVRMKVRECMEKEI-APIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV 128 (240)
Q Consensus 51 m~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~ 128 (240)
|++.+|++++++++.+|+|+++++ .+...+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+++.++++++++
T Consensus 1 m~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la~~ 80 (380)
T PRK03354 1 MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRL 80 (380)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccCChhHHHHHhhCCCCHHHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHHHHhc
Confidence 567799999999999999999875 56667778888999999999999999999 9999999999999999999999999
Q ss_pred CCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecC
Q 026317 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN 208 (240)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~ 208 (240)
|+++++++.++. ....+..+|+++||++||+++++|+.+.|+++|||+.|||...+.|+|++++|||+|||+|.||||
T Consensus 81 ~~s~~~~~~~~~--~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis~ 158 (380)
T PRK03354 81 GAPTYVLYQLPG--GFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITS 158 (380)
T ss_pred CcchHHHHHhcc--cHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEeCCEEEEeeEEEEEcC
Confidence 998776554442 345678889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCC---CCeeEEEEeCCcee
Q 026317 209 STFADVLVIFARNTTT---NQINGYANQSIKFV 238 (240)
Q Consensus 209 ~~~Ad~~~v~a~~~~~---~~~~~flVp~~~~~ 238 (240)
+.+|||++|.|+++.+ .++++|+||+++..
T Consensus 159 ~~~ad~~~v~a~~~~~~~~~~~~~~lv~~~~~g 191 (380)
T PRK03354 159 SAYTPYIVVMARDGASPDKPVYTEWFVDMSKPG 191 (380)
T ss_pred CCcCCEEEEEEEcCCCCCCCceeEEEEECCCCc
Confidence 9999999999997422 34788999986543
No 9
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=2.6e-35 Score=274.68 Aligned_cols=201 Identities=26% Similarity=0.284 Sum_probs=166.8
Q ss_pred ccccccCCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHH-HHHHHHHhhccccHHHHHHhCCCCHHHHHH
Q 026317 16 ARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRM-KVRECMEKEIAPIMAEYWEKAEFPFHVIPK 94 (240)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 94 (240)
+.++|.|+|+|+.+.++|++. +++|++.+.+ .++.++. .+.+ ....++.+.+|+++|++
T Consensus 57 ~~~lf~G~~~~~~l~~~p~~~------------------l~~eeq~fl~~~v~~l~~-~~~e-~~~~~~~~~~P~evw~~ 116 (774)
T PRK13026 57 EGELFSGKPDWQKLHSYPKPT------------------LTAEEQAFIDNEVETLLT-MLDD-WDIVQNRKDLPPEVWDY 116 (774)
T ss_pred hhhhcCCCCChhhcCCCCccc------------------cCHHHHHHHHHHHHHHHh-hhhh-hhhhhhhcCCCHHHHHH
Confidence 678999999999998877764 4566665554 5677554 2222 23335678999999999
Q ss_pred HHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchHHHHhhhhHH-HHHHhccCCHHHHHhhchhhhcCCceEEE
Q 026317 95 LGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLA-MLTIALCGSEEQKQKYLPSLAQLNTIACW 172 (240)
Q Consensus 95 l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~-~~~l~~~g~~~~~~~~l~~l~~G~~~~~~ 172 (240)
|++.||+++ +|++|||.|++..+++.++|++++.+.+.+..+.+|++++ ..+|..+|+++||++|||++++|+.++|+
T Consensus 117 Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LAsGe~i~af 196 (774)
T PRK13026 117 LKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLPRLADGTEIPCF 196 (774)
T ss_pred HHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHhCCCeEEEE
Confidence 999999999 9999999999999999999999998888777666776665 35788999999999999999999999999
Q ss_pred EeeCCCCCCCcCCCceEEE-----EeCC---EEEEeeeEeeecCCCCCCEEEEEEEe-CC--------CCCeeEEEEeCC
Q 026317 173 ALTEPAYGSDASALNTTAT-----KVEG---GWILEGQKRWIGNSTFADVLVIFARN-TT--------TNQINGYANQSI 235 (240)
Q Consensus 173 a~tEp~~Gsd~~~~~t~a~-----~~~~---g~~LnG~K~~vs~~~~Ad~~~v~a~~-~~--------~~~~~~flVp~~ 235 (240)
++|||++|||+.+++|+++ ++++ ||+|||+|.||||+..||+++|.+++ ++ ..++++|+||++
T Consensus 197 AlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLNG~K~~IT~A~~Ad~~~v~ar~~dpd~~~g~~~~~GiT~fLVp~d 276 (774)
T PRK13026 197 ALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWDKRYITLAPVATVLGLAFKLRDPDGLLGDKKELGITCALIPTD 276 (774)
T ss_pred EecCCCCCCchhcccceeeeeeeeecCCccccEEEEEEEEeecCccccCEEEEEEEeeCccccccCCCCCceEEEEEECC
Confidence 9999999999999887654 4666 69999999999999999999888764 22 247999999986
Q ss_pred c
Q 026317 236 K 236 (240)
Q Consensus 236 ~ 236 (240)
.
T Consensus 277 ~ 277 (774)
T PRK13026 277 H 277 (774)
T ss_pred C
Confidence 3
No 10
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=6.1e-35 Score=257.13 Aligned_cols=182 Identities=20% Similarity=0.185 Sum_probs=159.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhhccccHHH--HHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccC
Q 026317 53 DLLTSEEQAVRMKVRECMEKEIAPIMAE--YWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD 129 (240)
Q Consensus 53 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~ 129 (240)
+.++++++++++.+++|+++.+.+...+ .|+.+.+|.++|++|.+.||+++ +|++|||.|+++.+.+.++|++++.+
T Consensus 2 ~~~~~eq~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~~~~ 81 (378)
T TIGR03203 2 FDLSEEQRLLKESVEGLLKTSYDFDSRKKYQKEKGGWSKAVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALGKAL 81 (378)
T ss_pred CCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHhccCCCCHHHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHHhCcc
Confidence 4578999999999999999988765543 45667899999999999999999 99999999999999999999999987
Q ss_pred CcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCC
Q 026317 130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (240)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~ 209 (240)
.+.+. +. +..++..++..+|+++||++|||++++|+.+.++++|||++|||...++|+|++++|+|+|||+|.||||+
T Consensus 82 ~~~~~-~~-~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt~a 159 (378)
T TIGR03203 82 VLEPY-LA-TVVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNG 159 (378)
T ss_pred cchHH-HH-HHHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEcCCEEEEEeEEEEecCC
Confidence 65442 22 22244567888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCC----CCCeeEEEEeCCc
Q 026317 210 TFADVLVIFARNTT----TNQINGYANQSIK 236 (240)
Q Consensus 210 ~~Ad~~~v~a~~~~----~~~~~~flVp~~~ 236 (240)
..||+++|+|++++ .+++++|+||++.
T Consensus 160 ~~Ad~~lv~ar~~~~~~~~~g~~~flV~~~~ 190 (378)
T TIGR03203 160 ETADTLIVTARTKGARRDRTGIGVFLVPAGA 190 (378)
T ss_pred ccCCEEEEEEecCCCCCCCCceEEEEEECCC
Confidence 99999999999742 2578999999864
No 11
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-34 Score=255.64 Aligned_cols=184 Identities=22% Similarity=0.269 Sum_probs=163.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhcc-ccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHcc
Q 026317 51 FDDLLTSEEQAVRMKVRECMEKEIA-PIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV 128 (240)
Q Consensus 51 m~~~l~~~~~~l~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~ 128 (240)
|+|.++++++++++.+++|+.+.+. +.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+++.++|++++.
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la~~ 80 (381)
T PRK12341 1 MDFSLTEEQELLLASIRELITRNFPEEYFRTCDENGTYPREFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEVSKC 80 (381)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHHHhCCCCHHHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHHHhhc
Confidence 6778999999999999999999886 4667778888999999999999999999 9999999999999999999999999
Q ss_pred CCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhh-hcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeec
Q 026317 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSL-AQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIG 207 (240)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l-~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs 207 (240)
|.+ .+.+ ++.++...+..+|+++||++|++++ .+|+.++++++|||+.|||...++|+|++++|||+|||+|+|||
T Consensus 81 ~~~-~~~~--~~~~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~~is 157 (381)
T PRK12341 81 GAP-AFLI--TNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFIT 157 (381)
T ss_pred Chh-HHHH--hhhhhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEeCCEEEEEeEEEEEc
Confidence 987 3333 3334555678899999999999998 59998899999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCC----CCeeEEEEeCCce
Q 026317 208 NSTFADVLVIFARNTTT----NQINGYANQSIKF 237 (240)
Q Consensus 208 ~~~~Ad~~~v~a~~~~~----~~~~~flVp~~~~ 237 (240)
|+..||+++|.|+++++ .++++|+||+++-
T Consensus 158 ~~~~Ad~~~v~a~~~~~~~~~~~~~~~lV~~~~~ 191 (381)
T PRK12341 158 GAKEYPYMLVLARDPQPKDPKKAFTLWWVDSSKP 191 (381)
T ss_pred CCccCCEEEEEEEcCCCCCCCCceEEEEEeCCCC
Confidence 99999999999997532 3588999998753
No 12
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=8.8e-35 Score=258.73 Aligned_cols=202 Identities=28% Similarity=0.386 Sum_probs=176.0
Q ss_pred ccccccCCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHH
Q 026317 16 ARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKL 95 (240)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l 95 (240)
.++.|+|..+.+.+.+||. + |++.++++++++++.+++|+++.+.|. ++++.+.+|.++|++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~-------------~--~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~l 65 (409)
T cd01161 3 ALNMFLGDIVTKQVFPYPS-------------V--LTEEQTEELNMLVGPVEKFFEEVNDPA--KNDQLEKIPRKTLTQL 65 (409)
T ss_pred hhHhhcCCcchhhcCCCcc-------------c--cCccCCHHHHHHHHHHHHHHHHhCCch--hhccccCCCHHHHHHH
Confidence 3567788887777776653 2 555688999999999999999998875 3466778999999999
Q ss_pred HhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEe
Q 026317 96 GALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWAL 174 (240)
Q Consensus 96 ~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~ 174 (240)
++.||+++ +|++|||.|+++.++..++|++++ |+++++.+.+|..++...+..+|+++|+++|++++++|+.++|+++
T Consensus 66 ~~~Gl~~l~vP~~~GG~g~~~~~~~~v~e~l~~-~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~ 144 (409)
T cd01161 66 KELGLFGLQVPEEYGGLGLNNTQYARLAEIVGM-DLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFAL 144 (409)
T ss_pred HhCCCCCCCCChhhCCCCCCHHHHHHHHHHHhh-ChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEe
Confidence 99999999 999999999999999999999999 9988887777765555567789999999999999999999999999
Q ss_pred eCCCCCCCcCCCceEEEEe--CCEEEEeeeEeeecCCCCCCEEEEEEEeCC-------CCCeeEEEEeCC
Q 026317 175 TEPAYGSDASALNTTATKV--EGGWILEGQKRWIGNSTFADVLVIFARNTT-------TNQINGYANQSI 235 (240)
Q Consensus 175 tEp~~Gsd~~~~~t~a~~~--~~g~~LnG~K~~vs~~~~Ad~~~v~a~~~~-------~~~~~~flVp~~ 235 (240)
|||++|||...+.|+|+++ ++||+|||+|.||||+..||+++|.|+++. .+++++|+||++
T Consensus 145 tEp~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~~vs~~~~Ad~~lv~ar~~~~~~~g~~~~~~~~flvp~~ 214 (409)
T cd01161 145 TEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITNGGIADIFTVFAKTEVKDATGSVKDKITAFIVERS 214 (409)
T ss_pred cCCCCCCChhhCeeEEEEcCCCCEEEEEeEEEeecCCCcCCEEEEEEEcCCCCCCCCCCCceEEEEEeCC
Confidence 9999999999999999984 557999999999999999999999999751 146889999987
No 13
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=1.2e-34 Score=257.48 Aligned_cols=185 Identities=27% Similarity=0.434 Sum_probs=169.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHH--HHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHc
Q 026317 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFH--VIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIAR 127 (240)
Q Consensus 51 m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~ 127 (240)
.||.+++++.++++.+++|+++.+.|.+.+.|+.+.+|.+ +|++|++.||+++ +|++|||.|+++.+++.++|++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~la~ 101 (404)
T PLN02519 22 SSLLFDDTQLQFKESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISR 101 (404)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcchHHHHhcCCCCchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHhh
Confidence 3566899999999999999999999998888888888876 6999999999999 999999999999999999999999
Q ss_pred cCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeec
Q 026317 128 VDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIG 207 (240)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs 207 (240)
.|+++++++.+|..++...+..+|+++||++|+|++++|+.++|+++|||++|||...+.|+|++++|||+|||+|.|+|
T Consensus 102 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs 181 (404)
T PLN02519 102 ASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCT 181 (404)
T ss_pred hcccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEeCCEEEEEeEEEeec
Confidence 99999988777766566678889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCC---CCeeEEEEeCC
Q 026317 208 NSTFADVLVIFARNTTT---NQINGYANQSI 235 (240)
Q Consensus 208 ~~~~Ad~~~v~a~~~~~---~~~~~flVp~~ 235 (240)
|+..||+++|.|+++++ .++++|+||++
T Consensus 182 ~a~~ad~~~v~a~~~~~~~~~~~~~~lVp~~ 212 (404)
T PLN02519 182 NGPVAQTLVVYAKTDVAAGSKGITAFIIEKG 212 (404)
T ss_pred CCCcCCEEEEEEEeCCCCCCCeeEEEEEeCC
Confidence 99999999999997532 35889999985
No 14
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=1.8e-34 Score=253.90 Aligned_cols=182 Identities=34% Similarity=0.484 Sum_probs=167.6
Q ss_pred CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcch
Q 026317 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCS 133 (240)
Q Consensus 55 l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~ 133 (240)
++++++++++.+++|+.+.+.|.+.+.|+.+.+|.++|+.|++.||+++ +|++|||.|+++.+++.+++++++.|++++
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~~~~ 81 (376)
T cd01156 2 LDDEIEMLRQSVREFAQKEIAPLAAKIDRDNEFPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASGSVA 81 (376)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccchhHH
Confidence 5688999999999999999999888888888899999999999999999 999999999999999999999999999998
Q ss_pred HHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCCCCC
Q 026317 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (240)
Q Consensus 134 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~Ad 213 (240)
+.+..|..++...|..+|+++|+++|++++++|+.++++++|||.+|||...++|+|++++|||+|||+|.||||+..||
T Consensus 82 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~ 161 (376)
T cd01156 82 LSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDAD 161 (376)
T ss_pred HHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCCcCC
Confidence 87766755556678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCC---CCeeEEEEeCCc
Q 026317 214 VLVIFARNTTT---NQINGYANQSIK 236 (240)
Q Consensus 214 ~~~v~a~~~~~---~~~~~flVp~~~ 236 (240)
+++|.|+++++ .++++|+||+++
T Consensus 162 ~~lv~a~~~~~~~~~~~~~~lv~~~~ 187 (376)
T cd01156 162 TLVVYAKTDPSAGAHGITAFIVEKGM 187 (376)
T ss_pred EEEEEEEeCCCCCCCceEEEEEcCCC
Confidence 99999997533 468899999876
No 15
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=1.5e-34 Score=254.67 Aligned_cols=181 Identities=27% Similarity=0.439 Sum_probs=163.4
Q ss_pred CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcch
Q 026317 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCS 133 (240)
Q Consensus 55 l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~ 133 (240)
++++++++++.+++|+++.+.|.+.+.|+.+.+|.++|++|.+.||+++ +|++|||.|+++.+++.++|++++.|++++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~~~~ 80 (378)
T cd01157 1 LTEQQKEFQETARKFAREEIIPVAAEYDKSGEYPWPLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCTGVQ 80 (378)
T ss_pred CCHHHHHHHHHHHHHHHHhcccchHHHHhhCCCCHHHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhhHHH
Confidence 3678899999999999999999888888888999999999999999999 999999999999999999999999999877
Q ss_pred HHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCCCCC
Q 026317 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (240)
Q Consensus 134 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~Ad 213 (240)
+.+..+ .++...+..+|+++||++||+++++|+.++++++|||+.|||...+.|+|++++|||+|||+|.||||+..||
T Consensus 81 ~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad 159 (378)
T cd01157 81 TAIEAN-SLGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKAN 159 (378)
T ss_pred HHHHhh-hhhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCccCC
Confidence 655444 3455566678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCC------CCeeEEEEeCCc
Q 026317 214 VLVIFARNTTT------NQINGYANQSIK 236 (240)
Q Consensus 214 ~~~v~a~~~~~------~~~~~flVp~~~ 236 (240)
|++|.++++++ .++++|+||+++
T Consensus 160 ~~lv~a~~~~~~~~~~~~~~~~~lv~~~~ 188 (378)
T cd01157 160 WYFLLARSDPDPKCPASKAFTGFIVEADT 188 (378)
T ss_pred EEEEEEEeCCcccCCCCCceEEEEEcCCC
Confidence 99999997532 357899999876
No 16
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=3.8e-34 Score=251.67 Aligned_cols=182 Identities=26% Similarity=0.286 Sum_probs=164.7
Q ss_pred CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcch
Q 026317 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCS 133 (240)
Q Consensus 55 l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~ 133 (240)
++++++++++.+++|+.+.+.|.+.+.|+.+.+|.++|++|.+.||+++ +|++|||.|+++.+++.++|++++.|++++
T Consensus 1 ~t~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~ 80 (372)
T TIGR03207 1 LNEDLQALADTARRFARERIAPGFKERDKTRVLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADLSMS 80 (372)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCccHH
Confidence 4678899999999999999999988888888999999999999999999 999999999999999999999999999987
Q ss_pred HHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCCCCC
Q 026317 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (240)
Q Consensus 134 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~Ad 213 (240)
++...+ .++...+..+|+++|+++||+++++|+.++++++|||+.|||...+.|+|++++|||+|||+|.||||+..||
T Consensus 81 ~~~~~~-~~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~~ad 159 (372)
T TIGR03207 81 YVNLLA-SLNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQAD 159 (372)
T ss_pred HHHHhh-hHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCCcCC
Confidence 654333 3455678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCC----CCCeeEEEEeCCce
Q 026317 214 VLVIFARNTT----TNQINGYANQSIKF 237 (240)
Q Consensus 214 ~~~v~a~~~~----~~~~~~flVp~~~~ 237 (240)
+++|++++++ ..++++|+||+++-
T Consensus 160 ~~lv~a~~~~~~~~~~~~~~~lVp~~~~ 187 (372)
T TIGR03207 160 AAVVFARTGSEAEGARGISAFLVPMDLP 187 (372)
T ss_pred EEEEEEEcCCCCCCCCceEEEEEcCCCC
Confidence 9999999753 23688999998753
No 17
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=3.8e-34 Score=254.73 Aligned_cols=182 Identities=26% Similarity=0.360 Sum_probs=166.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCc
Q 026317 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDAS 131 (240)
Q Consensus 53 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~ 131 (240)
+.++++++++++.+++|+.+.+.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|+++++|++
T Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s 114 (410)
T PTZ00461 35 YNPTPEHAALRETVAKFSREVVDKHAREDDINMHFNRDLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPG 114 (410)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCccHHHHhhhCCCCHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHHhhCch
Confidence 578999999999999999999999988888888999999999999999999 9999999999999999999999999988
Q ss_pred chHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCC-EEEEeeeEeeecCCC
Q 026317 132 CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEG-GWILEGQKRWIGNST 210 (240)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~-g~~LnG~K~~vs~~~ 210 (240)
+++.+.+|..+....+..+|+++||++|++++++|+.++|+++|||++|||...+.|+|+++++ ||+|||+|.||||+.
T Consensus 115 ~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs~a~ 194 (410)
T PTZ00461 115 FCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGT 194 (410)
T ss_pred HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeECCCc
Confidence 7766656654455677889999999999999999999999999999999999999999999764 799999999999999
Q ss_pred CCCEEEEEEEeCCCCCeeEEEEeCCc
Q 026317 211 FADVLVIFARNTTTNQINGYANQSIK 236 (240)
Q Consensus 211 ~Ad~~~v~a~~~~~~~~~~flVp~~~ 236 (240)
.||+++|.|+++ +++++|+||++.
T Consensus 195 ~Ad~~lv~a~~~--~~~~~flVp~~~ 218 (410)
T PTZ00461 195 VADVFLIYAKVD--GKITAFVVERGT 218 (410)
T ss_pred cCCEEEEEEEeC--CceEEEEEeCCC
Confidence 999999999975 458899999873
No 18
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=3.5e-34 Score=253.74 Aligned_cols=183 Identities=26% Similarity=0.306 Sum_probs=158.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhccccHHHHH-HhCCCCH----HHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHH
Q 026317 52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYW-EKAEFPF----HVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEI 125 (240)
Q Consensus 52 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d-~~~~~~~----~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~l 125 (240)
|+.++++++++++.+++|+.+.+.|...+.+ +...+|. ++|++|.++||+++ +|++|||.|+++.+++.++|++
T Consensus 1 ~~~lteeq~~l~~~~r~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~eel 80 (395)
T TIGR03204 1 DLAFSKEEQAFRDEVRSFFKDNVPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEEL 80 (395)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCChhhhhhhhccCCCChHHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999887765432 3334664 89999999999999 9999999999999999999999
Q ss_pred HccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEee
Q 026317 126 ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRW 205 (240)
Q Consensus 126 a~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~ 205 (240)
++++.+.++...++ ++...+..+|+++||++|||++++|+.+.++++|||++|||...+.|+|++++++|+|||+|.|
T Consensus 81 g~~~~~~~~~~~~~--~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~ 158 (395)
T TIGR03204 81 QSAPAPQPLAFGVS--MVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTW 158 (395)
T ss_pred HhcCCCccchhHhH--hhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEcCCEEEEeeEEEe
Confidence 99998877543322 3344678889999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCEEEEEEEeCC----CCCeeEEEEeCCc
Q 026317 206 IGNSTFADVLVIFARNTT----TNQINGYANQSIK 236 (240)
Q Consensus 206 vs~~~~Ad~~~v~a~~~~----~~~~~~flVp~~~ 236 (240)
|+|+..||+++|.|++++ ..++++|+||++.
T Consensus 159 vt~a~~Ad~~lv~a~~~~~~~~~~g~~~flV~~~~ 193 (395)
T TIGR03204 159 TTLAQHADWIFCLCRTDPTAKKQMGISFILVDMKS 193 (395)
T ss_pred ecCCccCCeEEEEEEeCCCCCCCCCeEEEEEeCCC
Confidence 999999999999999753 2468999999863
No 19
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=5.5e-34 Score=250.57 Aligned_cols=178 Identities=32% Similarity=0.430 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchHHH
Q 026317 58 EEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFI 136 (240)
Q Consensus 58 ~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~ 136 (240)
+++++++.+++|+.+.+.|.+.+.|+.+.+|+++|++|++.||+++ +|++|||.|+++.+++.++|++++.+.+ ++.+
T Consensus 2 ~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~-~~~~ 80 (372)
T cd01160 2 EHDAFRDVVRRFFAKEVAPFHHEWEKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGS-GPGL 80 (372)
T ss_pred hHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcch-HHHH
Confidence 5789999999999999999888888888999999999999999999 9999999999999999999999996655 6666
Q ss_pred HhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCCCCCEEE
Q 026317 137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLV 216 (240)
Q Consensus 137 ~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~Ad~~~ 216 (240)
.+|..++...+..+|+++|+++|++++++|+.++|+++|||.+|||...+.|+++++++||+|||+|.||||+..||+++
T Consensus 81 ~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad~~~ 160 (372)
T cd01160 81 SLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADVVI 160 (372)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCccCEEE
Confidence 66654566678889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCC----CCeeEEEEeCCc
Q 026317 217 IFARNTTT----NQINGYANQSIK 236 (240)
Q Consensus 217 v~a~~~~~----~~~~~flVp~~~ 236 (240)
|.|+++++ .++++|+||++.
T Consensus 161 v~a~~~~~~~~~~~~~~~lv~~~~ 184 (372)
T cd01160 161 VVARTGGEARGAGGISLFLVERGT 184 (372)
T ss_pred EEEEeCCCCCCCCceEEEEEeCCC
Confidence 99997533 468999999875
No 20
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=7.7e-34 Score=249.99 Aligned_cols=181 Identities=30% Similarity=0.476 Sum_probs=166.5
Q ss_pred CCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcch
Q 026317 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCS 133 (240)
Q Consensus 55 l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~ 133 (240)
++++++++++.+++|+.+.+.|.+.+.|..+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++++++++|++++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~~~~ 80 (375)
T cd01162 1 LNEEQRAIQEVARAFAAKEMAPHAADWDQKKHFPVDVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCVSTA 80 (375)
T ss_pred CCHHHHHHHHHHHHHHHHhCCcchhhHHhhCCCCHHHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhchhHH
Confidence 4678899999999999999999988888889999999999999999999 999999999999999999999999999988
Q ss_pred HHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCCCCC
Q 026317 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (240)
Q Consensus 134 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~Ad 213 (240)
+++.+|. ++...+..+|+++|+++|++++++|+.++++++|||.+|||...+.|+++++++||+|||+|.||||+..||
T Consensus 81 ~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad 159 (375)
T cd01162 81 AYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSD 159 (375)
T ss_pred HHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCCCCC
Confidence 7777664 456678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCC--CCeeEEEEeCCc
Q 026317 214 VLVIFARNTTT--NQINGYANQSIK 236 (240)
Q Consensus 214 ~~~v~a~~~~~--~~~~~flVp~~~ 236 (240)
+++|.|+++++ .++++|+||++.
T Consensus 160 ~~~v~a~~~~~~~~~~~~~lv~~~~ 184 (375)
T cd01162 160 VYVVMARTGGEGPKGISCFVVEKGT 184 (375)
T ss_pred EEEEEEEecCCCCCceEEEEEeCCC
Confidence 99999997532 468899999876
No 21
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=8.8e-33 Score=242.89 Aligned_cols=182 Identities=42% Similarity=0.601 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchHHH
Q 026317 58 EEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFI 136 (240)
Q Consensus 58 ~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~ 136 (240)
++.++++.+++|+.+.+.+.+.+.|+.+.+|.+.|++|++.||+++ +|++|||.|.++.+++.++++++++|+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~~~~ 81 (373)
T cd01158 2 EHQMIRKTVRDFAEKEIAPLAAEMDEKGEFPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAVIV 81 (373)
T ss_pred hHHHHHHHHHHHHHHhcccchHHHhhcCCCCHHHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHHHHH
Confidence 4789999999999998988888888888899999999999999999 999999999999999999999999999999888
Q ss_pred HhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCCCCCEEE
Q 026317 137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLV 216 (240)
Q Consensus 137 ~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~Ad~~~ 216 (240)
.+|..++...+..+++++|+++|++++++|+.++++++|||.+|||...+.++++++++||+|||+|.|+||+.+|||++
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad~~l 161 (373)
T cd01158 82 SVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADFYI 161 (373)
T ss_pred HHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCCEEE
Confidence 88865666778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCC---CCeeEEEEeCCc--eec
Q 026317 217 IFARNTTT---NQINGYANQSIK--FVL 239 (240)
Q Consensus 217 v~a~~~~~---~~~~~flVp~~~--~~~ 239 (240)
|.++++++ .++++|+||+++ ++|
T Consensus 162 v~a~~~~~~~~~~~~~~lvp~~~~gv~i 189 (373)
T cd01158 162 VFAVTDPSKGYRGITAFIVERDTPGLSV 189 (373)
T ss_pred EEEEcCCCCCCCceEEEEEcCCCCCeec
Confidence 99997533 358899999877 554
No 22
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.98 E-value=8.4e-32 Score=237.47 Aligned_cols=177 Identities=29% Similarity=0.365 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHHHhhccccHHHH-----HHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCc
Q 026317 58 EEQAVRMKVRECMEKEIAPIMAEY-----WEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDAS 131 (240)
Q Consensus 58 ~~~~l~~~~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~ 131 (240)
+++++++.+++|+++++.|..... ++.+.+|.+++++|++.||+++ +|++|||.|.++.+++.++|++++.|++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~~~~ 81 (380)
T cd01152 2 SEEAFRAEVRAWLAAHLPPELREESALGYREGREDRRRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAAGAP 81 (380)
T ss_pred cHHHHHHHHHHHHHhcCCccccccccccccccchHHHHHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCCC
Confidence 477999999999999998876532 3446688999999999999999 9999999999999999999999999998
Q ss_pred chHH-HHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCC
Q 026317 132 CSTF-ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210 (240)
Q Consensus 132 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~ 210 (240)
+++. +.++ ++...+..+|+++|+++||+++++|+.+.++++|||+.|||...+.|+++++++||+|||+|.||||+.
T Consensus 82 ~~~~~~~~~--~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~~~ 159 (380)
T cd01152 82 VPFNQIGID--LAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAH 159 (380)
T ss_pred cccchhhHH--HHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEcCcc
Confidence 8865 3322 344568889999999999999999998899999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCC----CCeeEEEEeCCc
Q 026317 211 FADVLVIFARNTTT----NQINGYANQSIK 236 (240)
Q Consensus 211 ~Ad~~~v~a~~~~~----~~~~~flVp~~~ 236 (240)
.||+++|.|+++++ .++++|+||++.
T Consensus 160 ~ad~~lv~a~~~~~~~~~~~~~~~lVp~~~ 189 (380)
T cd01152 160 YADWAWLLVRTDPEAPKHRGISILLVDMDS 189 (380)
T ss_pred ccCEEEEEEEeCCCccCcCCeEEEEEeCCC
Confidence 99999999997532 368899999865
No 23
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.98 E-value=4.5e-31 Score=233.87 Aligned_cols=181 Identities=20% Similarity=0.216 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHHHhhccccHHHHHHh-----------CCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHH
Q 026317 59 EQAVRMKVRECMEKEIAPIMAEYWEK-----------AEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIA 126 (240)
Q Consensus 59 ~~~l~~~~~~~~~~~~~~~~~~~d~~-----------~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la 126 (240)
.+++++++|+|+++++.|...+.|+. ..+++++|++++++||+++ +|++|||.|+++.+++.++|+++
T Consensus 3 ~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l~ 82 (394)
T cd01155 3 AQELRARVKAFMEEHVYPAEQEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAEETG 82 (394)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHHHHh
Confidence 57899999999999999987777643 1233589999999999999 99999999999999999999999
Q ss_pred ccCCc-chHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCC-CCCCcCCCceEEEEeCCEEEEeeeEe
Q 026317 127 RVDAS-CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPA-YGSDASALNTTATKVEGGWILEGQKR 204 (240)
Q Consensus 127 ~~~~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~-~Gsd~~~~~t~a~~~~~g~~LnG~K~ 204 (240)
+++.. .++....+...+...+..+|+++|+++|++++++|+.++++++|||+ .|||...+.|+|++++|||+|||+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k~ 162 (394)
T cd01155 83 RSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKW 162 (394)
T ss_pred hhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEECCEEEEEEEEE
Confidence 98643 22211122122345788899999999999999999999999999997 68999999999999999999999999
Q ss_pred eecCCCC--CCEEEEEEEeCCC-----CCeeEEEEeCCc--eec
Q 026317 205 WIGNSTF--ADVLVIFARNTTT-----NQINGYANQSIK--FVL 239 (240)
Q Consensus 205 ~vs~~~~--Ad~~~v~a~~~~~-----~~~~~flVp~~~--~~~ 239 (240)
||||+.+ +|+++|.++++++ .++++|+||++. ++|
T Consensus 163 ~vs~~~~~~a~~~~v~a~~~~~~~~~~~~~~~flVp~~~~Gv~i 206 (394)
T cd01155 163 WSSGAGDPRCKIAIVMGRTDPDGAPRHRQQSMILVPMDTPGVTI 206 (394)
T ss_pred EEcCCCCCCCCEEEEEEEeCCCcCCCCCceEEEEEeCCCCCeEe
Confidence 9999965 8899999987532 368999999873 554
No 24
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=99.97 E-value=1.3e-30 Score=230.85 Aligned_cols=183 Identities=36% Similarity=0.480 Sum_probs=159.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhhccccHHHHHH---hCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHcc
Q 026317 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWE---KAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV 128 (240)
Q Consensus 53 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~ 128 (240)
+.+++++.++++.+++|+.+.+.|...+.++ .+.+|.++++++.+.|++++ +|++|||.|.+..+...+.+++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~~~ 82 (393)
T COG1960 3 FDLSEEQEALRAEVREFAEEELAPEAAEIDRRIEDERFPRELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELARA 82 (393)
T ss_pred CcCCHHHHHHHHHHHHHHHHhcCcchhhhhhhcccccCHHHHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHHhh
Confidence 3455788999999999999999888777775 57889999999999999999 9999999999999999999999999
Q ss_pred CCcchHHHHhhhhH---HHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCc-eEEEEeCCEEEEeeeEe
Q 026317 129 DASCSTFILVHSSL---AMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALN-TTATKVEGGWILEGQKR 204 (240)
Q Consensus 129 ~~~~~~~~~~~~~~---~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~-t~a~~~~~g~~LnG~K~ 204 (240)
+++.+..+.++... ....+..+|+++|+++|+|++++|+.++|+++|||.+|||+..+. |++++.+|+|+|||+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~K~ 162 (393)
T COG1960 83 DAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKI 162 (393)
T ss_pred CcchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEecCCCEEEEeEEE
Confidence 99876655544322 223566799999999999999999999999999999999999887 77777677799999999
Q ss_pred eecCCCCCCEEEEEEEeCCC----CCeeEEEEeCC
Q 026317 205 WIGNSTFADVLVIFARNTTT----NQINGYANQSI 235 (240)
Q Consensus 205 ~vs~~~~Ad~~~v~a~~~~~----~~~~~flVp~~ 235 (240)
||||+..||+++|+|++++. +++++|+||++
T Consensus 163 ~is~~~~ad~~~v~Ar~~~~~~~~~gis~flV~~~ 197 (393)
T COG1960 163 WISNAPVADWLLVLARTDPAPGKHKGISLFLVPKD 197 (393)
T ss_pred EEcCCCCCCEEEEEEEcCCcccccCceEEEEEeCC
Confidence 99999999999999998653 47999999986
No 25
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.97 E-value=1.7e-30 Score=231.10 Aligned_cols=171 Identities=25% Similarity=0.304 Sum_probs=150.4
Q ss_pred HHHHHHHHHhhccccHHHHHHhCC--------CC---HHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCC
Q 026317 63 RMKVRECMEKEIAPIMAEYWEKAE--------FP---FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA 130 (240)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~d~~~~--------~~---~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~ 130 (240)
++++++|+.+.+.|.+.+.|++.. || .++|++|++.||+++ +|++|||.|.++.++..+.|+++++|.
T Consensus 2 ~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~p~~~~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~ 81 (407)
T cd01153 2 LEEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDA 81 (407)
T ss_pred hHHHHHHHHHHhhhhHHhHhccCCcccCCceEcChhHHHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhH
Confidence 578899999999998888877654 88 678999999999999 999999999999999999999999999
Q ss_pred cchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEe-CCEEEEeeeEeeecCC
Q 026317 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNS 209 (240)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~-~~g~~LnG~K~~vs~~ 209 (240)
++++++.+|. +...+..+|+++||++|++++++|+.++|+++|||++|||...++|+++++ +|||+|||+|.|+||+
T Consensus 82 s~~~~~~~~~--~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~ 159 (407)
T cd01153 82 PLMYASGTQG--AAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAG 159 (407)
T ss_pred HHHHHHHHhH--HHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCCcccceEEEEECCCCcEEEeeEEEEEeCC
Confidence 9887665542 345677789999999999999999999999999999999999999999998 5689999999999999
Q ss_pred CCC----CEEEEEEEeCCC----CCeeEEEEeCC
Q 026317 210 TFA----DVLVIFARNTTT----NQINGYANQSI 235 (240)
Q Consensus 210 ~~A----d~~~v~a~~~~~----~~~~~flVp~~ 235 (240)
.+| ++++|+++++++ .++++|+||++
T Consensus 160 ~~a~~~~~~~~v~a~~~~~~~~~~~~~~flVp~~ 193 (407)
T cd01153 160 EHDMSENIVHLVLARSEGAPPGVKGLSLFLVPKF 193 (407)
T ss_pred CcccccccEEEEEEeCCCCCCCCCceEEEEEecc
Confidence 886 578889987531 36899999987
No 26
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=99.97 E-value=1.6e-30 Score=240.26 Aligned_cols=179 Identities=21% Similarity=0.211 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHhCCC---------C---HHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHH
Q 026317 57 SEEQAVRMKVRECMEKEIAPIMAEYWEKAEF---------P---FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIA 123 (240)
Q Consensus 57 ~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~---------~---~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e 123 (240)
+...++++++++|+++.+.|...+.|+++.+ | .+.|+++.+.||+++ +|++|||.|++......+.|
T Consensus 58 ~~~~~il~~a~~fa~~~~~p~~~~~D~~~~~~~~~g~v~~p~g~~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~~~~E 137 (622)
T PTZ00456 58 ELMDSLLEEASKLATQTLLPLYESSDSEGCVLLKDGNVTTPKGFKEAYQALKAGGWTGISEPEEYGGQALPLSVGFITRE 137 (622)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhHhhccCccccCCcccCChhHHHHHHHHHHcCCCCCCCCcccCCCCcCHHHHHHHHH
Confidence 4567899999999999999998888876533 5 589999999999999 99999999999875555555
Q ss_pred HHHccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCE-EEEeee
Q 026317 124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG-WILEGQ 202 (240)
Q Consensus 124 ~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g-~~LnG~ 202 (240)
.+++++++++.+...+ ..+...|..+|+++||++|||++++|++++++++|||++|||+..++|+|++++|| |+|||+
T Consensus 138 ~~~~a~~~~~~~~~l~-~ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y~L~G~ 216 (622)
T PTZ00456 138 LMATANWGFSMYPGLS-IGAANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGT 216 (622)
T ss_pred HHHHhchHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHhcCChhhhhhccCCccCCCcccCeeEEEECCCCcEEEeeE
Confidence 5677777655443332 23456788999999999999999999999999999999999999999999998874 999999
Q ss_pred EeeecCCCCC----CEEEEEEEeCC----CCCeeEEEEeCCc
Q 026317 203 KRWIGNSTFA----DVLVIFARNTT----TNQINGYANQSIK 236 (240)
Q Consensus 203 K~~vs~~~~A----d~~~v~a~~~~----~~~~~~flVp~~~ 236 (240)
|.|||++.++ ++++|+||+++ .+++++|+||++.
T Consensus 217 K~fIt~g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFlVp~~~ 258 (622)
T PTZ00456 217 KIFISAGDHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHV 258 (622)
T ss_pred EEEecCCchhhccCcEEEEEEEecCCCCCCCceEEEEEeCCC
Confidence 9999999873 67899999853 2579999999853
No 27
>PLN02636 acyl-coenzyme A oxidase
Probab=99.97 E-value=1.5e-30 Score=242.52 Aligned_cols=221 Identities=16% Similarity=0.167 Sum_probs=180.0
Q ss_pred chhhhhhccccccCCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhc---cccHHHHHHhC
Q 026317 9 QDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEI---APIMAEYWEKA 85 (240)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~~~~~l~~~~~~~~~~~~---~~~~~~~d~~~ 85 (240)
...+|...+..|+......... .-.+.+-.....+.+|...|...+++++.++++.+++|+.+.. .|....+++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~f~~~~l~~~l~~~~~~~r~~v~~~~~~~~~~~~~~~~~~~~~~ 94 (686)
T PLN02636 16 IAARRIQRLSLHLSPVPLPKEE-QLSRLVCARSIKLSVNTEKLSLYMRGKHRDIQEKIYEFFNSRPDLQTPVEISKDEHR 94 (686)
T ss_pred HHHHHHHHHHHhcCcCCCCCcc-cCCcccccccccCCCCHHHHHhhcCCcHHHHHHHHHHHHHhCccccCCchhhHHHhh
Confidence 3446677778888755433321 1111111223456666666777788888899999999998773 56666677777
Q ss_pred CCC-HHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhh
Q 026317 86 EFP-FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSL 163 (240)
Q Consensus 86 ~~~-~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l 163 (240)
.++ .++++.+++.|++++ .|++ ++.++..+.|++++.+.+++..+.+|.+++...|..+||++||++|||++
T Consensus 95 e~~~~~l~~~~~~~g~~~~~~~~~------~~~~~~~~~e~l~~~d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L~~~ 168 (686)
T PLN02636 95 ELCMRQLTGLVREAGIRPMKYLVE------DPAKYFAITEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGI 168 (686)
T ss_pred hhHHHHHHHHHHhcCccccccccC------CHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHH
Confidence 888 889999999999999 8865 68889999999999998887777888778888899999999999999999
Q ss_pred hcCCceEEEEeeCCCCCCCcCCCceEEEEe--CCEEEEe-----eeEeeecCCCC-CCEEEEEEEeCC---------CCC
Q 026317 164 AQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGNSTF-ADVLVIFARNTT---------TNQ 226 (240)
Q Consensus 164 ~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~Ln-----G~K~~vs~~~~-Ad~~~v~a~~~~---------~~~ 226 (240)
.+|+.++|||+|||++|||+.+++|+|+++ +|+|+|| |+|+||+|+.. ||+++|+|++.. ..|
T Consensus 169 ~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLntP~~~g~K~wI~na~~~ad~~vV~Arl~~~~~~~~~~~~~G 248 (686)
T PLN02636 169 DNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPNDGAIKWWIGNAAVHGKFATVFARLKLPTHDSKGVSDMG 248 (686)
T ss_pred hCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECCCCCCeEEEeecCCcccCCEEEEEEEecCCCCCccCCCCCC
Confidence 999999999999999999999999999998 7889999 99999999975 999999999741 358
Q ss_pred eeEEEEeCCc
Q 026317 227 INGYANQSIK 236 (240)
Q Consensus 227 ~~~flVp~~~ 236 (240)
+++|+||.++
T Consensus 249 i~~FlVp~r~ 258 (686)
T PLN02636 249 VHAFIVPIRD 258 (686)
T ss_pred eeEEEEecCc
Confidence 9999999763
No 28
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.97 E-value=1.3e-30 Score=229.53 Aligned_cols=181 Identities=28% Similarity=0.378 Sum_probs=156.9
Q ss_pred CCCHHHHHHH----HHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHcc
Q 026317 54 LLTSEEQAVR----MKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV 128 (240)
Q Consensus 54 ~l~~~~~~l~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~ 128 (240)
.+++|+.++. ..+++|+.+.. ..+..|+...+++..++.|+++|++++ +|++|||.|+.+.+++++.|.++.+
T Consensus 75 v~~~e~~~~~~~~~~pl~r~f~e~~--d~~k~d~~~~~~~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~e~~~~~ 152 (634)
T KOG0137|consen 75 VITSEQKELLEQFVLPLERFFEEVN--DSKKNDKLGKIEETTLEALRELGLFGLQVPSEFDGLGFCNTQYARLFEIVSVA 152 (634)
T ss_pred cCcHHHHHHHHhhhhhHHHhhhccc--hhhhhhhhcccchhHHHHHHHhCceeeccCcccCccccchHHHHHHhhccccc
Confidence 3556665554 44555555433 345567888999999999999999999 9999999999999999999999999
Q ss_pred CCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCC--EEEEeeeEeee
Q 026317 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEG--GWILEGQKRWI 206 (240)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~--g~~LnG~K~~v 206 (240)
|.++++.+..|.+++...|..+|+++||++|||++++|+.+++||+|||..|||+....|+|+...| .|+|||.|.||
T Consensus 153 D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~LaSg~~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LNG~Kiwi 232 (634)
T KOG0137|consen 153 DLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLASGKLIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLNGSKIWI 232 (634)
T ss_pred cccceeeeccchhhheeeeeecCCHHHHHHHHHhhhcCCccceEEEecCCCCcccccceeeeeecCCCCeEEEcCeeEEE
Confidence 9999988888887888889999999999999999999999999999999999999999999987654 49999999999
Q ss_pred cCCCCCCEEEEEEEeCCC-------CCeeEEEEeCCc
Q 026317 207 GNSTFADVLVIFARNTTT-------NQINGYANQSIK 236 (240)
Q Consensus 207 s~~~~Ad~~~v~a~~~~~-------~~~~~flVp~~~ 236 (240)
+|+..||+++|+|+++.+ +++++|+|+++.
T Consensus 233 sn~g~Adif~VfAqt~~~~~~g~~k~k~T~Flver~~ 269 (634)
T KOG0137|consen 233 SNGGLADIFTVFAQTEVDPADGEVKRKITAFLVERDF 269 (634)
T ss_pred ecCccceeeeeeeccccCCCCccccCceEEEEEeccc
Confidence 999999999999998521 469999999763
No 29
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=99.97 E-value=1.8e-29 Score=222.34 Aligned_cols=166 Identities=19% Similarity=0.224 Sum_probs=144.8
Q ss_pred HHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchHHHHhhhhHHH
Q 026317 66 VRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAM 144 (240)
Q Consensus 66 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~ 144 (240)
+++++. .+.+.+.+.|+.+.+|.+.|+.|++.||+++ +|++|||.|+++.+++.++|++++.|+++++.+.+|.. ..
T Consensus 3 ~~~~~~-~~~~~a~~~d~~~~~p~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~-~~ 80 (377)
T cd01163 3 ARPLAA-RIAEGAAERDRQRGLPYEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHFG-FV 80 (377)
T ss_pred HHHHHH-HHhhhhhhhhhcCCCCHHHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH-HH
Confidence 455443 5777888889999999999999999999999 99999999999999999999999999999887777753 44
Q ss_pred HHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCCCCCEEEEEEEeCCC
Q 026317 145 LTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT 224 (240)
Q Consensus 145 ~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~Ad~~~v~a~~~~~ 224 (240)
..+..+|+++||++|++++++|+.+ +.++|||++|+ .....+++.+++|||+|||+|.||||+.+|||++|.+++++
T Consensus 81 ~~l~~~g~~~~~~~~l~~~~~g~~~-~~a~tE~~~~~-~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~- 157 (377)
T cd01163 81 EALLLAGPEQFRKRWFGRVLNGWIF-GNAVSERGSVR-PGTFLTATVRDGGGYVLNGKKFYSTGALFSDWVTVSALDEE- 157 (377)
T ss_pred HHHHhcCcHHHHHHHHHHHhCCCeE-EEeecCCCCCC-CCCceEEEEecCCEEEEeceEEeecCCccceEEEEEEEcCC-
Confidence 6788899999999999999999865 46999998776 66677788888899999999999999999999999999754
Q ss_pred CCeeEEEEeCCc
Q 026317 225 NQINGYANQSIK 236 (240)
Q Consensus 225 ~~~~~flVp~~~ 236 (240)
+++++|+||++.
T Consensus 158 ~~~~~~lV~~~~ 169 (377)
T cd01163 158 GKLVFAAVPTDR 169 (377)
T ss_pred CcEEEEEEeCCC
Confidence 567889999875
No 30
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=99.97 E-value=5.8e-29 Score=224.41 Aligned_cols=180 Identities=23% Similarity=0.278 Sum_probs=144.5
Q ss_pred ccccccCCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHH
Q 026317 16 ARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKL 95 (240)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l 95 (240)
.+++|+|+.+.+.++|||.-. +++++.+. ++.|+.+.- +.+
T Consensus 19 ~~~lF~g~~~~~~~~pyP~~~------------------~~~~~~~~---~~~~~~~~~------------------~~~ 59 (520)
T PTZ00457 19 AAGLFNFKIVPEEMFPYPCRK------------------LDGDEAEN---LQSLLEQIR------------------SND 59 (520)
T ss_pred HHHhhCcccchhhcCCCCCCC------------------CCHHHHHH---HHHHHHHHH------------------hch
Confidence 578899999999999888321 12333322 222222210 046
Q ss_pred Hhc-CcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEE
Q 026317 96 GAL-RVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173 (240)
Q Consensus 96 ~~~-Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a 173 (240)
+++ ||+++ +|++|||.|++..+++.++|++|+.+.+.+..+..|..++...+..+|+++||++|||++++|+.+++++
T Consensus 60 ~~l~Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe~i~A~A 139 (520)
T PTZ00457 60 KILGNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGTIMMGWA 139 (520)
T ss_pred HhcCCccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCcEEEEE
Confidence 799 99999 9999999999999999999999998877665444565566678888999999999999999999999999
Q ss_pred eeCCCCCCCcCCCceEEEEe-CCEEEEeeeEeeecCCCCCCEEEEEEEeCC----------CCCeeEEEEeCCc
Q 026317 174 LTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFADVLVIFARNTT----------TNQINGYANQSIK 236 (240)
Q Consensus 174 ~tEp~~Gsd~~~~~t~a~~~-~~g~~LnG~K~~vs~~~~Ad~~~v~a~~~~----------~~~~~~flVp~~~ 236 (240)
++| ++|||+..++|+|+++ +|+|+|||+|.|+ |+..||+++|+|++++ .+++++|+||++.
T Consensus 140 ltE-~aGSD~a~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad~~lV~Art~~~~~~~~g~~~~~git~FlV~~da 211 (520)
T PTZ00457 140 TEE-GCGSDISMNTTKASLTDDGSYVLTGQKRCE-FAASATHFLVLAKTLTQTAAEEGATEVSRNSFFICAKDA 211 (520)
T ss_pred eCC-CCCCccccceeEEEEcCCCeEEEEEEEEEE-cCchhcEEEEEeecCCcccccccccCcCceEEEEEECCC
Confidence 988 8999999999999986 5579999999966 8999999999999742 1368999999864
No 31
>PLN02876 acyl-CoA dehydrogenase
Probab=99.96 E-value=5.4e-29 Score=238.17 Aligned_cols=184 Identities=18% Similarity=0.200 Sum_probs=153.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhhccccHHHHHHhC-------CCC-HHHHHHHH-hcCcCCC-cccc---------------
Q 026317 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKA-------EFP-FHVIPKLG-ALRVAGG-TIKG--------------- 107 (240)
Q Consensus 53 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~-------~~~-~~~~~~l~-~~Gl~~l-~p~~--------------- 107 (240)
|.+|+++.++++++++|+++++.|...++++.. .+| .+.|+++. ++||+++ +|++
T Consensus 400 ~~~s~~~~~l~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~p~~~~~~~~~~~~~~~~~ 479 (822)
T PLN02876 400 FVPSEKVLELRKKLIKFMEDHIYPMENEFYKLAQSSSRWTVHPEEERLKELAKKEGLWNLWIPLDSAARARKLLFEDNKH 479 (822)
T ss_pred cCCCHHHHHHHHHHHHHHHHHccCccHHHHhhcccccccccCcchHHHHHHHHHcCcccCCCCchhhhhhhhcccccccc
Confidence 568999999999999999999888776655322 377 68888886 9999999 9984
Q ss_pred ---------CCCCCCCHHHHHHHHHHHHccCCcchHH-HHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCC
Q 026317 108 ---------YGCPGHSVTGAAIAIAEIARVDASCSTF-ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEP 177 (240)
Q Consensus 108 ---------~GG~g~~~~~~~~v~e~la~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp 177 (240)
|||.|++..+++.++|++|+++.+...+ ...+....+..|..+|+++||++||+++++|+.++|+++|||
T Consensus 480 ~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~tEp 559 (822)
T PLN02876 480 MVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAMTEP 559 (822)
T ss_pred cccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCC
Confidence 9999999999999999999987553221 112212334578889999999999999999999999999999
Q ss_pred C-CCCCcCCCceEEEEeCCEEEEeeeEeeecCC--CCCCEEEEEEEeCCC----CCeeEEEEeCCc
Q 026317 178 A-YGSDASALNTTATKVEGGWILEGQKRWIGNS--TFADVLVIFARNTTT----NQINGYANQSIK 236 (240)
Q Consensus 178 ~-~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~--~~Ad~~~v~a~~~~~----~~~~~flVp~~~ 236 (240)
+ +|||+.++.|+|++++|||+|||+|.||||+ ..||+++|.|+++++ +++++|+||++.
T Consensus 560 ~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~ar~~~~~~~~~~~s~flV~~~~ 625 (822)
T PLN02876 560 QVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMGKTDFNAPKHKQQSMILVDIQT 625 (822)
T ss_pred CccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEEecCCCCCCCCcceEEEEeCCC
Confidence 7 6899999999999999999999999999999 579999999997532 468899999753
No 32
>PLN02312 acyl-CoA oxidase
Probab=99.95 E-value=8.1e-28 Score=223.91 Aligned_cols=230 Identities=19% Similarity=0.204 Sum_probs=174.1
Q ss_pred CCCCCCCCchhhhhhccccccCCCcccccccC-CCC----CCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhc-
Q 026317 1 MTIHSSKHQDDVDKNARSSYFNLPALDISVAF-PQA----TPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEI- 74 (240)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~m~~~l~~~~~~l~~~~~~~~~~~~- 74 (240)
|+.+..+....+|.+.+..|+..+.......+ |.+ .|.+....+++|...|...+..+..+.++++++++.+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sf~~~~l~~~l~g~~~~~r~~~~~~~~~~p~ 80 (680)
T PLN02312 1 MMAGMSPSAAARRAHVLANHLAQSPPSPNSSLTPSPCLQYSPPELNESYAFDVKEMRKLLDGHNLEDRDWLFGLMMQSDL 80 (680)
T ss_pred CCCccchhHHHHHHHHHHHhccCCCCCCcccCCchhhhhcCCccccccCCCCHHHHHHHhCCccHHHHHHHHHHHhcCcc
Confidence 66677777778888899999976433222111 111 112223344444444443343344566777777766431
Q ss_pred -c-----------cc-HHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchHHHHhhh
Q 026317 75 -A-----------PI-MAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHS 140 (240)
Q Consensus 75 -~-----------~~-~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~ 140 (240)
. |. ....++...++.+.++++.+.|++++ +|+. |.+ +....+.++|++++.+.+++..+.+|.
T Consensus 81 f~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~~g~~~~~~pe~--g~~-~~~~~~~~~Eel~~~d~s~~~~~~vh~ 157 (680)
T PLN02312 81 FNSKRRGGRVFVSPDYNQTMEQQREITMKRILYLLERGVFRGWLTET--GPE-AELRKLALLEVIGIYDHSLAIKLGVHF 157 (680)
T ss_pred ccccccccccccCCccCCCHHHHHHhHHHHHHHHHHhhhcCCCCCCC--CCc-cHHHHHHHHHHHHHhcchHHHHHHhhh
Confidence 1 11 12345667888999999999999999 8874 333 678889999999999888777777887
Q ss_pred hHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEe--CCEEEEe-----eeEeeecCC-CCC
Q 026317 141 SLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGNS-TFA 212 (240)
Q Consensus 141 ~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~Ln-----G~K~~vs~~-~~A 212 (240)
+++...|..+|+++||++|||++.+|+.++|+|+|||++|||+.+++|+|+++ +++|+|| |+|+||+|+ ..|
T Consensus 158 ~l~~~~I~~~GTeeqk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A 237 (680)
T PLN02312 158 FLWGGAIKFLGTKRHHDKWLKDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHA 237 (680)
T ss_pred hhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccC
Confidence 77888899999999999999999999999999999999999999999999998 4679999 799999998 789
Q ss_pred CEEEEEEEeCC---CCCeeEEEEe
Q 026317 213 DVLVIFARNTT---TNQINGYANQ 233 (240)
Q Consensus 213 d~~~v~a~~~~---~~~~~~flVp 233 (240)
|+++|+|++.. ..|+++|+||
T Consensus 238 ~~~vV~Arl~~~~~~~Gv~~FlV~ 261 (680)
T PLN02312 238 THTIVFSQLHINGKNEGVHAFIAQ 261 (680)
T ss_pred CEEEEEEEECCCCCCCCeEEEEEe
Confidence 99999999852 2579999998
No 33
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=99.94 E-value=1.8e-26 Score=205.86 Aligned_cols=163 Identities=19% Similarity=0.182 Sum_probs=131.4
Q ss_pred HHHHhhccccHHHHHHhCC------CC---HHHHHHHHhcCcCCCccccCCCCCCCHHHHHHHHHHHHccCCcchHHHHh
Q 026317 68 ECMEKEIAPIMAEYWEKAE------FP---FHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILV 138 (240)
Q Consensus 68 ~~~~~~~~~~~~~~d~~~~------~~---~~~~~~l~~~Gl~~l~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~ 138 (240)
++++++ .|...++|+.+. +| .++++++.+.||+++.|+++||.| ......+.+.++..+...++.+.+
T Consensus 39 ~~a~~~-~P~~~~~d~~g~r~~~v~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~p~~~ 115 (418)
T cd01154 39 RLADRN-PPVLEMWDRWGRRVDRVWVHPAWHALMRRLIEEGVINIEDGPAGEGR--RHVHFAAGYLLSDAAAGLLCPLTM 115 (418)
T ss_pred HHhhcC-CCcccCCCCCCCcCCeEEeCHHHHHHHHHHHHcCCccCCchhhCCCc--HHHHHHHHHHHHhcchhccCcHHH
Confidence 334444 677778887776 67 788999999999998556666654 334445567777777666555545
Q ss_pred hhhHHHHHHhccCCHHHHHhhchhhhcCC----ceEEEEeeCCCCCCCcCCCceEEEEe-CCEEEEeeeEeeecCCCCCC
Q 026317 139 HSSLAMLTIALCGSEEQKQKYLPSLAQLN----TIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFAD 213 (240)
Q Consensus 139 ~~~~~~~~l~~~g~~~~~~~~l~~l~~G~----~~~~~a~tEp~~Gsd~~~~~t~a~~~-~~g~~LnG~K~~vs~~~~Ad 213 (240)
|. .++..|..+|+++| ++||+++++|+ .++|+++|||++|||+..++|+|+++ +|+|+|||+|+|+|++ .||
T Consensus 116 ~~-~~~~~l~~~g~~~~-~~~l~~l~~g~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a-~Ad 192 (418)
T cd01154 116 TD-AAVYALRKYGPEEL-KQYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAP-LAD 192 (418)
T ss_pred HH-HHHHHHHHhCcHHH-HHHHHHHhCCCcccchhheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCc-ccC
Confidence 54 46678889998876 57999999997 89999999999999999999999999 8899999999999999 999
Q ss_pred EEEEEEEeCCC----CCeeEEEEeCCc
Q 026317 214 VLVIFARNTTT----NQINGYANQSIK 236 (240)
Q Consensus 214 ~~~v~a~~~~~----~~~~~flVp~~~ 236 (240)
+++|+|+++++ +++++|+||++.
T Consensus 193 ~~lv~Art~~~~~~~~gls~flVp~~~ 219 (418)
T cd01154 193 AALVLARPEGAPAGARGLSLFLVPRLL 219 (418)
T ss_pred EEEEEEECCCCCCCCCcEEEEEEeccC
Confidence 99999998632 579999999863
No 34
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=99.92 E-value=2.5e-24 Score=189.22 Aligned_cols=154 Identities=18% Similarity=0.150 Sum_probs=126.5
Q ss_pred hhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchHHHHhhhhHHHHHHhcc
Q 026317 72 KEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALC 150 (240)
Q Consensus 72 ~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~ 150 (240)
+.+++.+.+.|+.+.+|.+.|+.|++.||+++ +|++|||.|+++.+.+.++|++++.|+++++++..++ .....+..+
T Consensus 8 ~~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~-~~~~~~~~~ 86 (370)
T cd01159 8 PLIRERAPEAERARRLPDEVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVA-THSRMLAAF 86 (370)
T ss_pred HHHHHhHHHHHHcCCCCHHHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHH-HHHHHHHhC
Confidence 34778888899999999999999999999999 9999999999999999999999999999887655443 445667788
Q ss_pred CCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCCCCCEEEEEEEeCC---CCCe
Q 026317 151 GSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTT---TNQI 227 (240)
Q Consensus 151 g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~Ad~~~v~a~~~~---~~~~ 227 (240)
++++|++.|++.. .+ ..+ | ...+.|+|++++|||+|||+|.|||++..||+++|.|++++ ..++
T Consensus 87 ~~~~~~~~~~~~~-~~--~~~--------g--~~~~~t~A~~~~~gy~lnG~K~~it~~~~ad~~~v~a~~~~~~~~~~~ 153 (370)
T cd01159 87 PPEAQEEVWGDGP-DT--LLA--------G--SYAPGGRAERVDGGYRVSGTWPFASGCDHADWILVGAIVEDDDGGPLP 153 (370)
T ss_pred CHHHHHHHhCCCC-Cc--eEE--------e--eecCCceeEEeCCeEEEeccccCccCCCcCceeEeeeECCCCCCCCcc
Confidence 9999998887642 11 111 1 12456899999999999999999999999999999999753 2468
Q ss_pred eEEEEeCCceec
Q 026317 228 NGYANQSIKFVL 239 (240)
Q Consensus 228 ~~flVp~~~~~~ 239 (240)
++|+||++.+++
T Consensus 154 ~~~lV~~~Gv~~ 165 (370)
T cd01159 154 RAFVVPRAEYEI 165 (370)
T ss_pred eEEEEEhHHCEE
Confidence 999999875543
No 35
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=99.87 E-value=5e-22 Score=145.77 Aligned_cols=112 Identities=45% Similarity=0.525 Sum_probs=104.4
Q ss_pred CHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchH
Q 026317 56 TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCST 134 (240)
Q Consensus 56 ~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~ 134 (240)
|++++++++++++|+++.+.|...+.|+++.+|+++|+++++.||+++ +|++|||.|+++.+.+.++++++++|.++++
T Consensus 1 t~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l~~~~~~~~~ 80 (113)
T PF02771_consen 1 TEEQQALREEAREFAEEEIAPHAAEWDEDGRFPREVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEELARADASLAF 80 (113)
T ss_dssp SHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHchHHHHHHHHhCCCCHHHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhhhhhcccccc
Confidence 578999999999999999999999998888999999999999999999 9999999999999999999999999999888
Q ss_pred HHHhhhhHHHHHHhccCCHHHHHhhchhhhcCC
Q 026317 135 FILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN 167 (240)
Q Consensus 135 ~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~ 167 (240)
.+.+|+++++..|..+|+++||++|||++++|+
T Consensus 81 ~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge 113 (113)
T PF02771_consen 81 ALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE 113 (113)
T ss_dssp HHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred hhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence 888887777789999999999999999999986
No 36
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=99.86 E-value=2.4e-20 Score=160.94 Aligned_cols=139 Identities=34% Similarity=0.498 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcCcCCCccccCCCCCCCHHHHHHHHHHHHccCCcchHHHH
Q 026317 58 EEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFIL 137 (240)
Q Consensus 58 ~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~ 137 (240)
+++++++.+++|+.+.+.+.....++ ++...|+.+.++|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~------------------------------------ 42 (327)
T cd00567 2 EQRELRDSAREFAAEELEPYARERRE---TPEEPWELLAELGLL------------------------------------ 42 (327)
T ss_pred hHHHHHHHHHHHHHHhccccHHhHHh---hCCCCHHHHHHHHHH------------------------------------
Confidence 46789999999999999888775544 444557777777776
Q ss_pred hhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCCCCCEEEE
Q 026317 138 VHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVI 217 (240)
Q Consensus 138 ~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~Ad~~~v 217 (240)
++..+|..+|+++|+++|++.+++|+.++++++|||.+|||...+.+++++++|||+|||+|.|+||+..|||++|
T Consensus 43 ----~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv 118 (327)
T cd00567 43 ----LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIV 118 (327)
T ss_pred ----hchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCCEEEE
Confidence 2334677789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCC----CCeeEEEEeCCc--eec
Q 026317 218 FARNTTT----NQINGYANQSIK--FVL 239 (240)
Q Consensus 218 ~a~~~~~----~~~~~flVp~~~--~~~ 239 (240)
.++++++ +++.+|+||+++ ++|
T Consensus 119 ~a~~~~~~~~~~~~~~~lvp~~~~Gv~~ 146 (327)
T cd00567 119 LARTDEEGPGHRGISAFLVPADTPGVTV 146 (327)
T ss_pred EEEeCCCCCCCCceEEEEEeCCCCCeEe
Confidence 9997542 468899999987 654
No 37
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]
Probab=99.84 E-value=7.2e-21 Score=154.31 Aligned_cols=141 Identities=20% Similarity=0.213 Sum_probs=115.0
Q ss_pred HhcCcCCC-ccc--cCCCCCCCHHHHHHHHHHHHccCCcchHHH-HhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEE
Q 026317 96 GALRVAGG-TIK--GYGCPGHSVTGAAIAIAEIARVDASCSTFI-LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIAC 171 (240)
Q Consensus 96 ~~~Gl~~l-~p~--~~GG~g~~~~~~~~v~e~la~~~~~~~~~~-~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~ 171 (240)
+..|++.+ +|. .--|.|++..+++.++|.+|+.-...-++- .......+..|..||+++||.+||-+++.|+...|
T Consensus 37 K~eGlWNLFlp~~~qkyg~GLtnveYa~icElmGrs~~APeVfNC~APDTGNMEvl~rYGseeQks~WL~PLLeG~irSc 116 (392)
T KOG1469|consen 37 KVEGLWNLFLPAVSQKYGAGLTNVEYAHICELMGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKSQWLIPLLEGNIRSC 116 (392)
T ss_pred HhcchHHhhhHHHHHhhccCccchhHHHHHHHhccccccchhccCCCCCCCCeeehhhhCCHHHHhhHhHHHhcCCceee
Confidence 45799999 773 334689999999999999999654422211 11122235678999999999999999999999999
Q ss_pred EEeeCCC-CCCCcCCCceEEEEeCCEEEEeeeEeeecCCC--CCCEEEEEEEeCCC-----CCeeEEEEeCCc
Q 026317 172 WALTEPA-YGSDASALNTTATKVEGGWILEGQKRWIGNST--FADVLVIFARNTTT-----NQINGYANQSIK 236 (240)
Q Consensus 172 ~a~tEp~-~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~--~Ad~~~v~a~~~~~-----~~~~~flVp~~~ 236 (240)
||+|||+ +.||+.++++..+++++.|+|||+|+|+||+. .|.+.++..+++.. ...++.+||+++
T Consensus 117 FaMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGkt~~~~~~rhkQqSmiLVpM~T 189 (392)
T KOG1469|consen 117 FAMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGKTDNTSASRHKQQSMILVPMNT 189 (392)
T ss_pred EeecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEecccCCCccchhhcccEEEEecCC
Confidence 9999999 58899999999999999999999999999985 47888888888643 347899999875
No 38
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=99.84 E-value=1.8e-20 Score=173.90 Aligned_cols=121 Identities=24% Similarity=0.308 Sum_probs=108.8
Q ss_pred CHHHHHHHHHHHHccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEe
Q 026317 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV 193 (240)
Q Consensus 114 ~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~ 193 (240)
++.++..+.|++++.+.+++..+.+|.++....|..+|+++|+++|||++.+|+.++|+++|||++|||+.+++|+|+++
T Consensus 80 ~~~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d 159 (610)
T cd01150 80 DPEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYD 159 (610)
T ss_pred CHHHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEEC
Confidence 57788889999999998876666777777788899999999999999999999999999999999999999999999998
Q ss_pred C--CEEEEe-----eeEeeecCCC-CCCEEEEEEEeC---CCCCeeEEEEeC
Q 026317 194 E--GGWILE-----GQKRWIGNST-FADVLVIFARNT---TTNQINGYANQS 234 (240)
Q Consensus 194 ~--~g~~Ln-----G~K~~vs~~~-~Ad~~~v~a~~~---~~~~~~~flVp~ 234 (240)
+ ++|+|| |+|+|++|+. .|++++|+|++. .+.|+++|+||.
T Consensus 160 ~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~FlVp~ 211 (610)
T cd01150 160 PLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPI 211 (610)
T ss_pred CCCCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCCCeEEEEEec
Confidence 8 889999 9999999985 499999999973 235899999996
No 39
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=99.84 E-value=7.6e-20 Score=166.37 Aligned_cols=139 Identities=20% Similarity=0.197 Sum_probs=103.7
Q ss_pred HHHHHHHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHH-HccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcC
Q 026317 89 FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEI-ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQL 166 (240)
Q Consensus 89 ~~~~~~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~l-a~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G 166 (240)
+++++.+.+.||.++ .++++| .+. ... ..+.+.+ +.......+.+.++ .++..+..+++++|+++|+|++++|
T Consensus 89 ~~~~~~~~~~g~~~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~g~~cp~~mT--~~a~~~l~~~~~e~~~~~lp~l~sg 163 (538)
T PRK11561 89 HLLMQGLCANRVHNLAWEEDAR-SGA-FVA-RAARFMLHAQVEAGTLCPITMT--FAATPLLLQMLPAPFQDWLTPLLSD 163 (538)
T ss_pred HHHHHHHHHcCCccCCCCCccC-chH-HHH-HHHHHHHHhhhhHHhhchHHHH--HHHHHHHHhcCHHHHHHHHHHHhCC
Confidence 356667778999988 666665 221 222 2222333 33333333223233 3455666778899999999999999
Q ss_pred C-------------ceEEEEeeCCCCCCCcCCCceEEEEe-CCEEEEeeeEeeecCCCCCCEEEEEEEeCCCCCeeEEEE
Q 026317 167 N-------------TIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYAN 232 (240)
Q Consensus 167 ~-------------~~~~~a~tEp~~Gsd~~~~~t~a~~~-~~g~~LnG~K~~vs~~~~Ad~~~v~a~~~~~~~~~~flV 232 (240)
+ .+.++++|||++|||+..++|+|+++ +|+|+|||+|+||| +..||+++|+|+++ +|+++|+|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiS-a~~AD~~lVlArt~--~Gls~FlV 240 (538)
T PRK11561 164 RYDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFS-VPQSDAHLVLAQAK--GGLSCFFV 240 (538)
T ss_pred CcccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEE-chhhCEEEEEEEEC--CceEEEEE
Confidence 7 45699999999999999999999994 67899999999999 58899999999986 68999999
Q ss_pred eCC
Q 026317 233 QSI 235 (240)
Q Consensus 233 p~~ 235 (240)
|++
T Consensus 241 p~~ 243 (538)
T PRK11561 241 PRF 243 (538)
T ss_pred ECC
Confidence 986
No 40
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=99.79 E-value=4.5e-19 Score=164.88 Aligned_cols=100 Identities=24% Similarity=0.460 Sum_probs=88.6
Q ss_pred HHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEe--CCEEEEe-----eeEeeec
Q 026317 135 FILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIG 207 (240)
Q Consensus 135 ~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~Ln-----G~K~~vs 207 (240)
.+.+|.++....|..+|+++|+++|||++.+|+.++|+|+|||++|||+.+++|+|+++ +++|+|| |+|+||+
T Consensus 94 ~~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g~K~wi~ 173 (646)
T PTZ00460 94 ISTVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEAVKFWPG 173 (646)
T ss_pred eEEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCeEEEccC
Confidence 34566666677788999999999999999999999999999999999999999999985 6789998 9999999
Q ss_pred C-CCCCCEEEEEEEeCC---CCCeeEEEEeC
Q 026317 208 N-STFADVLVIFARNTT---TNQINGYANQS 234 (240)
Q Consensus 208 ~-~~~Ad~~~v~a~~~~---~~~~~~flVp~ 234 (240)
| +..||+++|+|++.. +.|+++|+||.
T Consensus 174 ~~g~~A~~~vV~Arl~~~~~~~Gi~~FlV~i 204 (646)
T PTZ00460 174 ELGFLCNFALVYAKLIVNGKNKGVHPFMVRI 204 (646)
T ss_pred CCCCCCCEEEEEEEECcCCCCCceEEEEEec
Confidence 8 688999999999842 35899999993
No 41
>PLN02443 acyl-coenzyme A oxidase
Probab=99.76 E-value=2.8e-18 Score=159.85 Aligned_cols=99 Identities=31% Similarity=0.459 Sum_probs=88.3
Q ss_pred HhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEe--CCEEEEe-----eeEeeecCC
Q 026317 137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGNS 209 (240)
Q Consensus 137 ~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~Ln-----G~K~~vs~~ 209 (240)
.+|.++....|..+|+++|+++|||++.+|+.++|+|+|||++|||+.+++|+|+++ +++|+|| |+|+|++|+
T Consensus 100 ~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig~~ 179 (664)
T PLN02443 100 DLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGGL 179 (664)
T ss_pred eehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeecCC
Confidence 356556667788899999999999999999999999999999999999999999998 6789998 999999997
Q ss_pred -CCCCEEEEEEEeCC---CCCeeEEEEeCC
Q 026317 210 -TFADVLVIFARNTT---TNQINGYANQSI 235 (240)
Q Consensus 210 -~~Ad~~~v~a~~~~---~~~~~~flVp~~ 235 (240)
..||+++|+|++.. +.|+++|+||.+
T Consensus 180 ~~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r 209 (664)
T PLN02443 180 GKVSTHAVVYARLITNGKDHGIHGFIVQLR 209 (664)
T ss_pred cccCCEEEEEEEECCCCCCCCeEEEEEecC
Confidence 68999999999732 358999999965
No 42
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.73 E-value=9.6e-18 Score=105.72 Aligned_cols=52 Identities=44% Similarity=0.742 Sum_probs=47.3
Q ss_pred EEEeeCCCCCCCcCCCceEEEEeCCEEEEeeeEeeecCCCCCCEEEEEEEeC
Q 026317 171 CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT 222 (240)
Q Consensus 171 ~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~Ad~~~v~a~~~ 222 (240)
|+|+|||++|+|+..++|+|++++++|+|||+|+||+|+..||+++|+||++
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~d 52 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFARTD 52 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEES
T ss_pred CEEEcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEEC
Confidence 6899999999999999999999999999999999999999999999999973
No 43
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.71 E-value=3e-17 Score=144.48 Aligned_cols=212 Identities=22% Similarity=0.288 Sum_probs=165.7
Q ss_pred cCCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHH--HHHHHHHHHHHHHhhc----ccc-HHHHHHhCCCCHHHHH
Q 026317 21 FNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSE--EQAVRMKVRECMEKEI----API-MAEYWEKAEFPFHVIP 93 (240)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~~--~~~l~~~~~~~~~~~~----~~~-~~~~d~~~~~~~~~~~ 93 (240)
.+.|.+...+.+|..+...++..+.+|+..|...+.-| ..++...+-.++++.- .|. ....|+.+++....|.
T Consensus 5 ~~~~~~~~~p~l~~~Pl~~yr~~a~fdwK~~rl~~ege~~~lr~k~~vf~~~e~~p~~f~~p~~~l~me~qRel~~~r~~ 84 (661)
T KOG0135|consen 5 SSNPSLSLEPCLPSSPLDEYRKRATFDWKELRLLVEGENDGLRIKSKVFNRLESDPDLFVSPDRNLSMEEQRELCMKRIK 84 (661)
T ss_pred CCCCCccccccCCCCCcHHHHHhcCCCHHHHHHHhcccccceeeHHHHhhHhhcCCCeecCcccccCHHHHHHHHHHHHH
Confidence 35677777777777554667788888887776655544 4566677766666542 122 2235667777878888
Q ss_pred HHHhcCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEE
Q 026317 94 KLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACW 172 (240)
Q Consensus 94 ~l~~~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~ 172 (240)
.|.+.|.+.. ..+. + . -...-+..+.|.++.+|.|++.-+.+|..+.+..+..+||+..++ |+..+-.-+.++||
T Consensus 85 ~l~~~gv~~~~~~~~-~-~-~~~~k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~~~~n~ev~gcf 160 (661)
T KOG0135|consen 85 RLVELGVFKFWLVED-G-P-EAELKKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQKTENYEVKGCF 160 (661)
T ss_pred HHHHhccCcceeecC-c-h-HHHHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHhhhhcceeeeeE
Confidence 8888887765 2222 1 1 135568889999999999999999999988899999999988877 99999999999999
Q ss_pred EeeCCCCCCCcCCCceEEEEe--CCEEEEe-----eeEeeecCC-CCCCEEEEEEEe---CCCCCeeEEEEeCCc
Q 026317 173 ALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGNS-TFADVLVIFARN---TTTNQINGYANQSIK 236 (240)
Q Consensus 173 a~tEp~~Gsd~~~~~t~a~~~--~~g~~Ln-----G~K~~vs~~-~~Ad~~~v~a~~---~~~~~~~~flVp~~~ 236 (240)
|+||.++||++.+++|+|+.| .+.|+|| ..|+||.|+ .+|++.+|+|+. ..+.|++.|+|+..+
T Consensus 161 amTEl~HGSNt~~I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~FiiqIRd 235 (661)
T KOG0135|consen 161 AMTELGHGSNTKGIQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGFIIQIRD 235 (661)
T ss_pred EEeeecCCccccceeeeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEEEEEeeecCccCceeeEEEEeec
Confidence 999999999999999999998 6789998 789999996 579999999986 234689999998543
No 44
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism]
Probab=98.92 E-value=2.8e-09 Score=96.48 Aligned_cols=103 Identities=23% Similarity=0.298 Sum_probs=88.7
Q ss_pred hHHHHhhhhHHHHHHhccCCHHHHHhhchhhhcCCceEEEEeeCCCCCCCcCCCceEEEEeC--CEEEEe-----eeEee
Q 026317 133 STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVE--GGWILE-----GQKRW 205 (240)
Q Consensus 133 ~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~--~g~~Ln-----G~K~~ 205 (240)
+..+.+|..+....|..-|+++|.++||.+....++++|+|-||-++|+++++++|+|+.+. +.|+|| ..|||
T Consensus 108 ~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ta~KWW 187 (670)
T KOG0136|consen 108 GHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTLTATKWW 187 (670)
T ss_pred CchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCcceeccc
Confidence 34455687788889999999999999999999999999999999999999999999999875 459887 89999
Q ss_pred ecCC-CCCCEEEEEEEe---CCCCCeeEEEEeCC
Q 026317 206 IGNS-TFADVLVIFARN---TTTNQINGYANQSI 235 (240)
Q Consensus 206 vs~~-~~Ad~~~v~a~~---~~~~~~~~flVp~~ 235 (240)
..+. ..|+|.+|.|+. ...-|+..|+||-.
T Consensus 188 PGgLG~ssnhAvV~AqL~~~gk~~G~h~FiV~lR 221 (670)
T KOG0136|consen 188 PGGLGKSSNHAVVVAQLITKGKCYGPHPFIVQLR 221 (670)
T ss_pred CCccccccchheeeeeeeecccccccceeEEEcc
Confidence 9884 568999999986 33468999999853
No 45
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=98.15 E-value=1.7e-05 Score=72.11 Aligned_cols=88 Identities=19% Similarity=0.240 Sum_probs=63.9
Q ss_pred hccCCH--HHHHhhchhhhcCCceEEEEeeCCCC-CC----CcCCCce--EE-EEeCCEEEEeeeEeeecCCCCCCEEEE
Q 026317 148 ALCGSE--EQKQKYLPSLAQLNTIACWALTEPAY-GS----DASALNT--TA-TKVEGGWILEGQKRWIGNSTFADVLVI 217 (240)
Q Consensus 148 ~~~g~~--~~~~~~l~~l~~G~~~~~~a~tEp~~-Gs----d~~~~~t--~a-~~~~~g~~LnG~K~~vs~~~~Ad~~~v 217 (240)
..++++ +--.+|+..+...++..+.+++.|.. -| ....+.. +. +++++||+|||.|.|+|++ .||+++|
T Consensus 119 ~~~~~~y~~n~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve~~~dGiVV~GaK~~~T~~-~ad~~~V 197 (477)
T TIGR02309 119 GKSNSEFAENVRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVEQTDKGVIVRGARMTATFP-IADEILI 197 (477)
T ss_pred hhcCcHHHHHHHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEEEcCCCEEEeCHHHhhhhc-ccceEEE
Confidence 444443 33477889999999999999999863 11 1112222 33 4578899999999999997 9999999
Q ss_pred EEEeCCC----CC--eeEEEEeCCc
Q 026317 218 FARNTTT----NQ--INGYANQSIK 236 (240)
Q Consensus 218 ~a~~~~~----~~--~~~flVp~~~ 236 (240)
++++... ++ .++|+||+++
T Consensus 198 ~~~~~~~~~~~~~~ya~~F~VP~dt 222 (477)
T TIGR02309 198 FPSTVLKAGAEKDPYALAFAIPTNT 222 (477)
T ss_pred eccCCCCCccCCCCeEEEEEeeCCC
Confidence 9987432 23 6899999875
No 46
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=94.68 E-value=0.23 Score=41.73 Aligned_cols=83 Identities=14% Similarity=0.275 Sum_probs=52.1
Q ss_pred HHHHhhchhhhcCCceEEEEeeCCCC--CCCc----CCCceEEE-EeCCEEEEeeeEeeecCCCCCCEEEEEEEeC---C
Q 026317 154 EQKQKYLPSLAQLNTIACWALTEPAY--GSDA----SALNTTAT-KVEGGWILEGQKRWIGNSTFADVLVIFARNT---T 223 (240)
Q Consensus 154 ~~~~~~l~~l~~G~~~~~~a~tEp~~--Gsd~----~~~~t~a~-~~~~g~~LnG~K~~vs~~~~Ad~~~v~a~~~---~ 223 (240)
+-..+|+..+....+..+.+++.|.. +... ..+-.+.+ +.++|.+|+|.|...|+++.+|.++|+-... +
T Consensus 123 ~n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~p~~~~~~~ 202 (264)
T PF11794_consen 123 ENIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVFPTRAMRPG 202 (264)
T ss_dssp HHHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE--SSSSTTC
T ss_pred HHHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEeeccCCCCC
Confidence 33467888888899999999999973 2111 11233443 4678999999999999999999999976532 1
Q ss_pred CC-CeeEEEEeCCc
Q 026317 224 TN-QINGYANQSIK 236 (240)
Q Consensus 224 ~~-~~~~flVp~~~ 236 (240)
+. --.+|.||.+.
T Consensus 203 d~dyAv~FavP~~t 216 (264)
T PF11794_consen 203 DEDYAVAFAVPMNT 216 (264)
T ss_dssp CGGG-EEEEEETT-
T ss_pred CCceEEEEEccCCC
Confidence 22 24578888763
No 47
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A.
Probab=92.12 E-value=0.079 Score=39.16 Aligned_cols=33 Identities=30% Similarity=0.421 Sum_probs=27.2
Q ss_pred HHhhhhHHHHHHhccCCHHHHHhhchhhhcCCc
Q 026317 136 ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNT 168 (240)
Q Consensus 136 ~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~ 168 (240)
+.+|.++....|...||++|+++|+|...+.+.
T Consensus 92 ~~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~I 124 (125)
T PF14749_consen 92 LGLHFGMFIPTIMGQGTEEQQAKWLPKAENYEI 124 (125)
T ss_dssp HHHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHHHHHCCcc
Confidence 347888888999999999999999999877664
No 48
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.30 E-value=0.67 Score=41.90 Aligned_cols=87 Identities=17% Similarity=0.318 Sum_probs=60.7
Q ss_pred cCCH--HHHHhhchhhhcCCceEEEEeeCCCC-CC----CcC--CCceEE-EEeCCEEEEeeeEeeecCCCCCCEEEEE-
Q 026317 150 CGSE--EQKQKYLPSLAQLNTIACWALTEPAY-GS----DAS--ALNTTA-TKVEGGWILEGQKRWIGNSTFADVLVIF- 218 (240)
Q Consensus 150 ~g~~--~~~~~~l~~l~~G~~~~~~a~tEp~~-Gs----d~~--~~~t~a-~~~~~g~~LnG~K~~vs~~~~Ad~~~v~- 218 (240)
++++ +--.+|+..+...++..+-|+|.|.. -| ... .+-.+. .+.++|.+++|.|..+|+++.+|.++|+
T Consensus 125 ~~~dy~~n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dGIVVrGAK~~aT~~a~tdei~V~P 204 (493)
T COG2368 125 FGTDYHENAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDGIVVRGAKALATGSALTDEIFVLP 204 (493)
T ss_pred ccchHHHHHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEEecCceEEEChHHHhccccccceEEEee
Confidence 4553 34467899999999999999999863 11 112 222333 3467899999999999999999999988
Q ss_pred EEe--CCCCC-eeEEEEeCCc
Q 026317 219 ARN--TTTNQ-INGYANQSIK 236 (240)
Q Consensus 219 a~~--~~~~~-~~~flVp~~~ 236 (240)
.+. .++.. -..|.+|+++
T Consensus 205 t~~~~~~d~dfAv~FaiP~dt 225 (493)
T COG2368 205 TRSMQEDDKDFAVAFAIPMDT 225 (493)
T ss_pred ccccCCCCCceEEEEEcccCC
Confidence 443 22223 4568888764
No 49
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=89.89 E-value=0.59 Score=43.10 Aligned_cols=83 Identities=11% Similarity=0.163 Sum_probs=57.6
Q ss_pred HHHHhhchhhhcCCceEEEEeeCCCC-CC----CcCCCceEE-EEeCCEEEEeeeEeeecCCCCCCEEEE-EEEe---CC
Q 026317 154 EQKQKYLPSLAQLNTIACWALTEPAY-GS----DASALNTTA-TKVEGGWILEGQKRWIGNSTFADVLVI-FARN---TT 223 (240)
Q Consensus 154 ~~~~~~l~~l~~G~~~~~~a~tEp~~-Gs----d~~~~~t~a-~~~~~g~~LnG~K~~vs~~~~Ad~~~v-~a~~---~~ 223 (240)
+--.+|+..+.+..+..+.+++.|.. -| ....+-.+. ++.++|.+|+|.|...|+++.+|.++| .... .+
T Consensus 136 ~n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVee~~dGIVVrGAK~~aT~a~~a~ei~V~~~~~~~~~~ 215 (519)
T TIGR02310 136 DNARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEEERDDGIVVSGAKVVATNSALTHYNFIGFGSAQIIGD 215 (519)
T ss_pred HHHHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEEEcCCcEEEeCHHHHhcccchhcceeeccCcccccCC
Confidence 33467888888999999999998863 11 111222233 456789999999999999999999988 4443 12
Q ss_pred CCC-eeEEEEeCCc
Q 026317 224 TNQ-INGYANQSIK 236 (240)
Q Consensus 224 ~~~-~~~flVp~~~ 236 (240)
+.. -..|.||.+.
T Consensus 216 d~dyAvaFavP~dt 229 (519)
T TIGR02310 216 NDDFALMFIAPMDA 229 (519)
T ss_pred CCCeEEEEEeEcCC
Confidence 333 3468888764
No 50
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=47.46 E-value=75 Score=20.44 Aligned_cols=50 Identities=20% Similarity=0.171 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHHHHhh-ccccHHHHHHhCCCC-----HHHHHHHHhcCcCCC
Q 026317 54 LLTSEEQAVRMKVRECMEKE-IAPIMAEYWEKAEFP-----FHVIPKLGALRVAGG 103 (240)
Q Consensus 54 ~l~~~~~~l~~~~~~~~~~~-~~~~~~~~d~~~~~~-----~~~~~~l~~~Gl~~l 103 (240)
.||+.|.++.+.+++|..+. +.|..+++.+.-.+. ...++.|.+.|++.-
T Consensus 3 ~LT~rQ~~vL~~I~~~~~~~G~~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~r 58 (65)
T PF01726_consen 3 ELTERQKEVLEFIREYIEENGYPPTVREIAEALGLKSTSTVQRHLKALERKGYIRR 58 (65)
T ss_dssp ---HHHHHHHHHHHHHHHHHSS---HHHHHHHHTSSSHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHCcCccC
Confidence 37899999999999998864 567777766543443 456788889998754
No 51
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=38.91 E-value=80 Score=19.82 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=24.3
Q ss_pred EEEeeeEeeecCCCCCCEEEEEEEeCCCCCeeEEEE
Q 026317 197 WILEGQKRWIGNSTFADVLVIFARNTTTNQINGYAN 232 (240)
Q Consensus 197 ~~LnG~K~~vs~~~~Ad~~~v~a~~~~~~~~~~flV 232 (240)
|-|.|+|.||-.+++-+-+.+.-+.+...+.++++|
T Consensus 2 fdi~gqkayikdgp~rnrigivk~~e~q~~~~f~iv 37 (68)
T PF13051_consen 2 FDIVGQKAYIKDGPYRNRIGIVKKNEKQLESHFAIV 37 (68)
T ss_pred ccccccEeeeccCCccceeEEEecchhhcCCcEEEE
Confidence 347899999999998888777665543333344443
No 52
>PHA02095 hypothetical protein
Probab=31.59 E-value=35 Score=22.49 Aligned_cols=15 Identities=13% Similarity=0.481 Sum_probs=11.8
Q ss_pred eCCEEEEeeeEeeec
Q 026317 193 VEGGWILEGQKRWIG 207 (240)
Q Consensus 193 ~~~g~~LnG~K~~vs 207 (240)
...+|++||.|-|.-
T Consensus 25 iq~~yv~ng~wefsr 39 (84)
T PHA02095 25 IQNGYVENGSWEFSR 39 (84)
T ss_pred eeeeEEecCcEEEEe
Confidence 346899999999853
No 53
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=28.48 E-value=1.6e+02 Score=24.12 Aligned_cols=64 Identities=13% Similarity=0.152 Sum_probs=44.7
Q ss_pred hCCCCHHHHHHHHh-cCcCCC-ccccCCCCCCCHHHHHHHHHHHHccCCcchHHHHhhhhHHHHHHhccCCHHHHHhhch
Q 026317 84 KAEFPFHVIPKLGA-LRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLP 161 (240)
Q Consensus 84 ~~~~~~~~~~~l~~-~Gl~~l-~p~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~ 161 (240)
+..++.+++++++. +|-..+ +|-.-- ++.++-.+++.|-. | +.+|+..|.++.|++.|.
T Consensus 98 etTISAKvm~~ikavLgaTKiDLPVDIN----DPYDlGLLLRhLRH-----------H----SNLLAnIgdP~VreqVLs 158 (238)
T PF02084_consen 98 ETTISAKVMEDIKAVLGATKIDLPVDIN----DPYDLGLLLRHLRH-----------H----SNLLANIGDPEVREQVLS 158 (238)
T ss_pred CccccHHHHHHHHHHhcccccccccccC----ChhhHHHHHHHHHH-----------H----HHHHhhcCCHHHHHHHHH
Confidence 56788888888864 788888 885543 56777776665522 2 245777888888888887
Q ss_pred hhhcC
Q 026317 162 SLAQL 166 (240)
Q Consensus 162 ~l~~G 166 (240)
.+-..
T Consensus 159 AMqEe 163 (238)
T PF02084_consen 159 AMQEE 163 (238)
T ss_pred HHhhh
Confidence 76543
No 54
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=26.18 E-value=2.7e+02 Score=21.52 Aligned_cols=39 Identities=13% Similarity=0.065 Sum_probs=25.1
Q ss_pred eeEeeecCCCCCCEEEEEEEeCCC---CCeeEEEEeCCceec
Q 026317 201 GQKRWIGNSTFADVLVIFARNTTT---NQINGYANQSIKFVL 239 (240)
Q Consensus 201 G~K~~vs~~~~Ad~~~v~a~~~~~---~~~~~flVp~~~~~~ 239 (240)
++-.|+......+|++|.|..++. ..+.+|+++..+.+.
T Consensus 80 tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gqgV~ 121 (165)
T PF04115_consen 80 TSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQGVN 121 (165)
T ss_dssp B-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS-EEE
T ss_pred eeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCEEEE
Confidence 778888877745588888986422 458899999987653
No 55
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=24.62 E-value=2.5e+02 Score=21.14 Aligned_cols=47 Identities=19% Similarity=0.046 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhhcc--ccHHHHHHhCCCCHHHHHHHHhcCcCCC
Q 026317 57 SEEQAVRMKVRECMEKEIA--PIMAEYWEKAEFPFHVIPKLGALRVAGG 103 (240)
Q Consensus 57 ~~~~~l~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~l~~~Gl~~l 103 (240)
.+.+...+.+++|+.+.-. ....++.+.-.++.+.+..+.+.|=+-+
T Consensus 26 ~~~e~~f~kV~~yLr~~p~~~ati~eV~e~tgVs~~~I~~~IreGRL~~ 74 (137)
T TIGR03826 26 EEEEREFEKVYKFLRKHENRQATVSEIVEETGVSEKLILKFIREGRLQL 74 (137)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCcCHHHHHHHHHcCCeec
Confidence 3456677889999998765 4456666777899999999888886655
No 56
>cd08816 CARD_RIG-I_1 Caspase activation and recruitment domain found in RIG-I, first repeat. Caspase activation and recruitment domain (CARD) found in RIG-I (Retinoic acid Inducible Gene I, also known as Ddx58), first repeat. RIG-I is a cytoplasmic RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. RIG-I contains two N-terminal CARD domains and a C-terminal RNA helicase. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I recognizes different sets of viruses compared to MDA5, a related RNA helicase. RIG-I associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction doma
Probab=20.01 E-value=3.1e+02 Score=18.89 Aligned_cols=38 Identities=11% Similarity=0.117 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHH
Q 026317 57 SEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPK 94 (240)
Q Consensus 57 ~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 94 (240)
+++.......++++.+.+.|...-..-..-++.+.++.
T Consensus 2 ~~~k~nL~af~~yi~ktl~P~yIl~~m~~~~~~e~v~~ 39 (89)
T cd08816 2 AAEKRNLQRFRDYIKKILRPSYILGFMTTWLEDEEVER 39 (89)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHhcCHHHHHH
Confidence 45667777888888888777655333333444444433
Done!