BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026318
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2M38|A Chain A, Ptb Domain Of Aida1
Length = 153
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 103 GLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLT-KDVNRLEAENKQLIA 160
G L ELR +E + ++RA QK +++ T I ++ K V ++A NK +IA
Sbjct: 27 GSMLIKELRGTESTQDACAKMRANCQKSTEQMKKVPTIILSVSAKGVKFIDATNKNIIA 85
>pdb|2CH7|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of A Bacterial
Chemoreceptor From Thermotoga Maritima
Length = 309
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/152 (19%), Positives = 70/152 (46%), Gaps = 22/152 (14%)
Query: 27 RGLAPMHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDE--------- 77
RG A + L EE + + R+++E R +D + E+TA +E
Sbjct: 159 RGFAVVADEIRKLAEESQQASENVRRVVNEIRSIAEDAGKVSSEITARVEEGTKLADEAD 218
Query: 78 ---------IHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQ 128
+ R+ +++ + A E T + + + + +E + V ++ A +Q
Sbjct: 219 EKLNSIVGAVERINEMLQNIAAAIEEQTAAVDEITTAMTENAKNAEEITNSVKEVNARLQ 278
Query: 129 KLNSSRQELTTQIKGLTKDVNRLEAENKQLIA 160
++++S +E+T++++ + ++V L K+++A
Sbjct: 279 EISASTEEVTSRVQTIRENVQML----KEIVA 306
>pdb|3S6O|A Chain A, Crystal Structure Of A Polysaccharide Deacetylase Family
Protein From Burkholderia Pseudomallei
pdb|3S6O|B Chain B, Crystal Structure Of A Polysaccharide Deacetylase Family
Protein From Burkholderia Pseudomallei
pdb|3S6O|C Chain C, Crystal Structure Of A Polysaccharide Deacetylase Family
Protein From Burkholderia Pseudomallei
pdb|3S6O|D Chain D, Crystal Structure Of A Polysaccharide Deacetylase Family
Protein From Burkholderia Pseudomallei
Length = 321
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 23/105 (21%)
Query: 7 ISRHPDSARGFRDGPRPVLTRGLAPMHFHPMTLEEEIEIQRREM---------------- 50
I RHP+ AR F + + G +H+ MT E E E R M
Sbjct: 111 IERHPELARAFVELGHEIACHGWRWIHYQDMTPEREAEHMRLGMEAIERVTGVRPLGWYT 170
Query: 51 -------HRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKL 88
HR+++E + D+ H +L D G +P+L
Sbjct: 171 GRDSPNTHRLVAEYGGFLYDSDHYGDDLPFWMDVEVSGGASVPQL 215
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 11/134 (8%)
Query: 39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRAD-KEAHTR 97
L + ++ RRE+ +++E R +D ++ T + + + RL +I KL + K+A
Sbjct: 181 LRDFVDSLRRELIEVLAEIRVELDYPDEIE---TNTGEVVTRLERIKEKLTEELKKADAG 237
Query: 98 ELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ 157
L +RGL++ + +P + L + LN R + T I G T+DV E +
Sbjct: 238 ILLNRGLRMVI---VGKPNVGKSTLLN---RLLNEDRA-IVTDIPGTTRDVISEEIVIRG 290
Query: 158 LIAMRADIDGIRSE 171
++ D G+RSE
Sbjct: 291 ILFRIVDTAGVRSE 304
>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|B Chain B, Crytal Structure Of Apc Complexed With Asef
Length = 458
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 53/114 (46%), Gaps = 8/114 (7%)
Query: 124 RAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEK 183
+A + + + L Q+K ++D+ ++ A + ++ RAD++ ++ R K
Sbjct: 235 KATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKT-----LREVGSVK 289
Query: 184 KANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGL-GKISFFLGALTW 236
E +E K+ E+ L S+ + L A + C + G ++F +G LT+
Sbjct: 290 ALMECALEVKK--ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY 341
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 61/115 (53%), Gaps = 10/115 (8%)
Query: 108 VELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN----RLEAENKQLIAMRA 163
V L+ +E + AEV +LRAEVQ+L + + + ++GL +++ R L
Sbjct: 446 VPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSD 505
Query: 164 DIDGIRSELVEARRAFEF-EKKANEEQIEQKQA----MENNLISMAREIEKLRAE 213
+++ + + L E R+AF+ E +A + + KQ +E I++ ++++ RA+
Sbjct: 506 NLNKVFTHLKE-RQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAK 559
>pdb|3RDH|A Chain A, X-Ray Induced Covalent Inhibition Of 14-3-3
pdb|3RDH|B Chain B, X-Ray Induced Covalent Inhibition Of 14-3-3
pdb|3RDH|C Chain C, X-Ray Induced Covalent Inhibition Of 14-3-3
pdb|3RDH|D Chain D, X-Ray Induced Covalent Inhibition Of 14-3-3
Length = 248
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 15/126 (11%)
Query: 105 KLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRAD 164
K+E ELR + +V+ L + N+S+ E + D R AE +A D
Sbjct: 88 KIETELR---DICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAE----VAAGDD 140
Query: 165 IDGIRSELVEARR-AFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACG 223
GI + +A + AFE KK + Q + +A E+LN+ +AC
Sbjct: 141 KKGIVDQSQQAYQEAFEISKK-------EMQPTHPIRLGLALNFSVFYYEILNSPEKACS 193
Query: 224 LGKISF 229
L K +F
Sbjct: 194 LAKTAF 199
>pdb|3R64|A Chain A, Crystal Structure Of A Nad-Dependent Benzaldehyde
Dehydrogenase From Corynebacterium Glutamicum
pdb|3R64|B Chain B, Crystal Structure Of A Nad-Dependent Benzaldehyde
Dehydrogenase From Corynebacterium Glutamicum
pdb|3R64|C Chain C, Crystal Structure Of A Nad-Dependent Benzaldehyde
Dehydrogenase From Corynebacterium Glutamicum
pdb|3R64|D Chain D, Crystal Structure Of A Nad-Dependent Benzaldehyde
Dehydrogenase From Corynebacterium Glutamicum
Length = 508
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 16/81 (19%)
Query: 39 LEEEIEIQRREMHRIISENR--------HAIDDNTHLQRELTASKDEIHRLGQIIPKLRA 90
L+E+IE+ ++E + E H D T ++ +++EI G +I L+A
Sbjct: 345 LKEKIELAKKEGATVQVEGPIEGRLVHPHVFSDVT---SDMEIAREEI--FGPLISVLKA 399
Query: 91 DKEAHTRELF---DRGLKLEV 108
D EAH EL D GL V
Sbjct: 400 DDEAHAAELANASDFGLSAAV 420
>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm
pdb|3T7U|B Chain B, A New Crytal Structure Of Apc-Arm
Length = 378
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 53/114 (46%), Gaps = 8/114 (7%)
Query: 124 RAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEK 183
+A + + + L Q+K ++D+ ++ A + ++ RAD++ ++ R K
Sbjct: 119 KATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKT-----LREVGSVK 173
Query: 184 KANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGL-GKISFFLGALTW 236
E +E K+ E+ L S+ + L A + C + G ++F +G LT+
Sbjct: 174 ALMECALEVKK--ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY 225
>pdb|4FJ3|A Chain A, 14-3-3 Isoform Zeta In Complex With A Diphoyphorylated
C-Raf Peptide
pdb|4FJ3|B Chain B, 14-3-3 Isoform Zeta In Complex With A Diphoyphorylated
C-Raf Peptide
Length = 235
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 15/126 (11%)
Query: 105 KLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRAD 164
K+E ELR + +V+ L + N+S+ E + D R AE +A D
Sbjct: 90 KIETELR---DICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAE----VAAGDD 142
Query: 165 IDGIRSELVEARR-AFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACG 223
GI + +A + AFE KK + Q + +A E+LN+ +AC
Sbjct: 143 KKGIVDQSQQAYQEAFEISKK-------EMQPTHPIRLGLALNFSVFYYEILNSPEKACS 195
Query: 224 LGKISF 229
L K +F
Sbjct: 196 LAKTAF 201
>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|B Chain B, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|C Chain C, Crystal Structure Of Apc Complexed With Asef
Length = 354
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 53/114 (46%), Gaps = 8/114 (7%)
Query: 124 RAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEK 183
+A + + + L Q+K ++D+ ++ A + ++ RAD++ ++ R K
Sbjct: 119 KATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKT-----LREVGSVK 173
Query: 184 KANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGL-GKISFFLGALTW 236
E +E K+ E+ L S+ + L A + C + G ++F +G LT+
Sbjct: 174 ALMECALEVKK--ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY 225
>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
pdb|3QHE|C Chain C, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
Length = 337
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 53/114 (46%), Gaps = 8/114 (7%)
Query: 124 RAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEK 183
+A + + + L Q+K ++D+ ++ A + ++ RAD++ ++ R K
Sbjct: 121 KATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKT-----LREVGSVK 175
Query: 184 KANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGL-GKISFFLGALTW 236
E +E K+ E+ L S+ + L A + C + G ++F +G LT+
Sbjct: 176 ALMECALEVKK--ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY 227
>pdb|2O02|A Chain A, Phosphorylation Independent Interactions Between 14-3-3
And Exoenzyme S: From Structure To Pathogenesis
pdb|2O02|B Chain B, Phosphorylation Independent Interactions Between 14-3-3
And Exoenzyme S: From Structure To Pathogenesis
Length = 230
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 15/126 (11%)
Query: 105 KLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRAD 164
K+E ELR + +V+ L + N+S+ E + D R AE +A D
Sbjct: 85 KIETELR---DICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAE----VAAGDD 137
Query: 165 IDGIRSELVEARR-AFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACG 223
GI + +A + AFE KK + Q + +A E+LN+ +AC
Sbjct: 138 KKGIVDQSQQAYQEAFEISKK-------EMQPTHPIRLGLALNFSVFYYEILNSPEKACS 190
Query: 224 LGKISF 229
L K +F
Sbjct: 191 LAKTAF 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,996,872
Number of Sequences: 62578
Number of extensions: 210643
Number of successful extensions: 848
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 809
Number of HSP's gapped (non-prelim): 88
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)