Query 026318
Match_columns 240
No_of_seqs 88 out of 90
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 06:28:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026318.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026318hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02169 SMC_prok_A chromosom 97.6 0.022 4.7E-07 58.5 23.0 48 39-86 292-339 (1164)
2 TIGR02168 SMC_prok_B chromosom 97.6 0.027 5.8E-07 57.4 23.4 6 39-44 703-708 (1179)
3 TIGR02169 SMC_prok_A chromosom 97.5 0.028 6E-07 57.7 22.8 23 193-215 471-493 (1164)
4 PRK11637 AmiB activator; Provi 97.5 0.064 1.4E-06 51.1 23.1 81 127-207 172-252 (428)
5 TIGR02168 SMC_prok_B chromosom 97.4 0.06 1.3E-06 54.9 22.8 19 38-56 688-706 (1179)
6 PF00038 Filament: Intermediat 97.3 0.074 1.6E-06 47.9 19.8 116 39-154 9-139 (312)
7 PRK09039 hypothetical protein; 97.2 0.04 8.7E-07 51.9 17.4 146 66-214 43-199 (343)
8 PF08317 Spc7: Spc7 kinetochor 97.1 0.029 6.2E-07 52.1 15.9 34 60-93 154-187 (325)
9 PRK02224 chromosome segregatio 96.8 0.39 8.4E-06 49.2 22.5 79 65-147 209-287 (880)
10 PF05701 WEMBL: Weak chloropla 96.7 0.5 1.1E-05 46.8 21.6 68 113-180 283-361 (522)
11 PRK03918 chromosome segregatio 96.6 0.65 1.4E-05 47.3 21.9 76 101-176 221-296 (880)
12 PF08317 Spc7: Spc7 kinetochor 96.6 0.22 4.8E-06 46.2 17.1 173 47-219 77-265 (325)
13 COG1196 Smc Chromosome segrega 96.4 0.84 1.8E-05 49.1 22.5 48 167-214 867-914 (1163)
14 PF07888 CALCOCO1: Calcium bin 96.4 1.3 2.8E-05 45.0 22.8 164 39-217 141-316 (546)
15 TIGR00606 rad50 rad50. This fa 96.4 0.57 1.2E-05 50.9 21.2 172 44-219 715-909 (1311)
16 PF06818 Fez1: Fez1; InterPro 96.4 0.27 5.9E-06 44.1 15.7 98 115-212 70-198 (202)
17 PF10174 Cast: RIM-binding pro 96.4 0.36 7.8E-06 50.6 18.8 156 55-227 3-178 (775)
18 PF00038 Filament: Intermediat 96.2 0.76 1.6E-05 41.4 18.1 127 53-185 6-146 (312)
19 PF12325 TMF_TATA_bd: TATA ele 96.1 0.081 1.8E-06 43.6 10.0 74 104-180 19-92 (120)
20 PF07798 DUF1640: Protein of u 96.0 0.44 9.6E-06 40.7 14.7 76 50-128 28-108 (177)
21 KOG0161 Myosin class II heavy 96.0 1.3 2.8E-05 50.7 21.9 142 41-182 1386-1527(1930)
22 COG1196 Smc Chromosome segrega 96.0 1.8 4E-05 46.6 22.4 37 39-75 672-708 (1163)
23 PRK02224 chromosome segregatio 96.0 1.5 3.2E-05 45.1 20.7 13 65-77 216-228 (880)
24 PF10174 Cast: RIM-binding pro 95.9 1.7 3.6E-05 45.8 20.7 91 42-133 54-164 (775)
25 TIGR00606 rad50 rad50. This fa 95.9 0.85 1.9E-05 49.6 19.3 21 197-217 1027-1047(1311)
26 smart00787 Spc7 Spc7 kinetocho 95.7 0.74 1.6E-05 43.3 16.1 30 60-89 149-178 (312)
27 PF07888 CALCOCO1: Calcium bin 95.7 2.5 5.5E-05 42.9 20.4 44 41-84 150-193 (546)
28 TIGR03007 pepcterm_ChnLen poly 95.6 0.85 1.9E-05 43.7 16.6 58 124-181 316-373 (498)
29 KOG0995 Centromere-associated 95.6 1 2.2E-05 46.0 17.4 121 92-216 240-364 (581)
30 PRK03918 chromosome segregatio 95.5 3.3 7.2E-05 42.3 22.4 11 203-213 403-413 (880)
31 TIGR01000 bacteriocin_acc bact 95.5 1.8 3.8E-05 41.7 18.1 27 155-181 235-261 (457)
32 PF05701 WEMBL: Weak chloropla 95.4 2.4 5.1E-05 42.2 19.2 116 62-177 123-263 (522)
33 PRK11637 AmiB activator; Provi 95.1 3.3 7.1E-05 39.6 23.4 85 128-215 162-250 (428)
34 PF04156 IncA: IncA protein; 95.1 1.2 2.6E-05 37.6 13.8 113 58-170 77-189 (191)
35 PF09726 Macoilin: Transmembra 94.9 1.2 2.6E-05 46.1 15.9 94 116-220 465-567 (697)
36 PF09789 DUF2353: Uncharacteri 94.8 1.5 3.2E-05 41.9 15.0 117 51-171 75-197 (319)
37 KOG0977 Nuclear envelope prote 94.8 5.4 0.00012 40.6 20.1 57 158-214 171-231 (546)
38 PRK04863 mukB cell division pr 94.8 3.2 7E-05 46.5 19.6 159 62-220 935-1117(1486)
39 PRK04778 septation ring format 94.5 2.1 4.5E-05 42.8 16.1 161 58-218 245-417 (569)
40 TIGR01843 type_I_hlyD type I s 94.5 3.8 8.3E-05 37.5 20.0 69 159-227 213-282 (423)
41 PF06160 EzrA: Septation ring 94.4 2.7 5.9E-05 42.0 16.5 173 39-216 220-404 (560)
42 PF04111 APG6: Autophagy prote 94.3 1.2 2.7E-05 41.6 13.3 117 112-233 37-160 (314)
43 PF13514 AAA_27: AAA domain 94.3 9.2 0.0002 41.1 22.0 139 42-180 154-327 (1111)
44 smart00787 Spc7 Spc7 kinetocho 94.2 1.3 2.8E-05 41.7 13.1 174 46-219 71-260 (312)
45 PHA02562 46 endonuclease subun 94.1 5.8 0.00013 38.3 19.9 24 66-89 185-208 (562)
46 TIGR02680 conserved hypothetic 94.1 9.8 0.00021 42.2 21.2 29 42-70 743-771 (1353)
47 PRK09841 cryptic autophosphory 94.0 1.2 2.5E-05 45.7 13.4 121 57-180 262-387 (726)
48 PRK04863 mukB cell division pr 94.0 14 0.00029 41.8 22.8 180 34-216 833-1045(1486)
49 PF09787 Golgin_A5: Golgin sub 93.8 7.7 0.00017 38.4 19.8 152 54-217 213-381 (511)
50 PF06818 Fez1: Fez1; InterPro 93.7 2 4.3E-05 38.6 12.7 77 140-218 67-151 (202)
51 KOG0161 Myosin class II heavy 93.6 15 0.00032 42.6 22.0 49 39-87 969-1017(1930)
52 COG4372 Uncharacterized protei 93.5 8.9 0.00019 38.2 21.9 169 48-227 109-296 (499)
53 PF08826 DMPK_coil: DMPK coile 93.0 0.73 1.6E-05 34.1 7.5 43 105-147 5-47 (61)
54 PF08647 BRE1: BRE1 E3 ubiquit 92.9 2.7 5.7E-05 32.9 11.0 78 125-209 17-94 (96)
55 PF07798 DUF1640: Protein of u 92.9 5 0.00011 34.3 13.6 26 202-227 135-162 (177)
56 PF14662 CCDC155: Coiled-coil 92.9 6.9 0.00015 35.1 15.5 40 50-89 10-49 (193)
57 COG1579 Zn-ribbon protein, pos 92.8 7.7 0.00017 35.6 20.3 136 49-188 11-156 (239)
58 PF07111 HCR: Alpha helical co 92.7 3.7 8E-05 43.0 14.6 133 43-181 68-215 (739)
59 PF04849 HAP1_N: HAP1 N-termin 92.5 7.4 0.00016 37.0 15.3 160 48-214 82-264 (306)
60 PF12325 TMF_TATA_bd: TATA ele 92.3 3.8 8.3E-05 33.8 11.7 69 112-180 17-85 (120)
61 KOG0977 Nuclear envelope prote 91.8 4.3 9.4E-05 41.3 13.6 78 75-156 140-221 (546)
62 TIGR02680 conserved hypothetic 91.7 25 0.00054 39.1 21.4 15 39-53 754-768 (1353)
63 TIGR01005 eps_transp_fam exopo 91.7 15 0.00033 37.4 17.5 40 141-180 354-393 (754)
64 PF12718 Tropomyosin_1: Tropom 91.7 7.1 0.00015 32.7 15.4 128 66-193 4-134 (143)
65 PF15070 GOLGA2L5: Putative go 91.7 16 0.00035 37.6 17.6 149 65-213 18-193 (617)
66 PRK10884 SH3 domain-containing 91.6 2.6 5.7E-05 37.5 10.7 14 203-216 151-164 (206)
67 KOG0996 Structural maintenance 91.6 20 0.00044 39.8 18.9 26 50-75 822-847 (1293)
68 PF12128 DUF3584: Protein of u 91.5 24 0.00053 38.5 22.0 100 114-218 355-455 (1201)
69 COG1579 Zn-ribbon protein, pos 91.5 11 0.00024 34.6 17.0 66 69-141 17-82 (239)
70 TIGR01843 type_I_hlyD type I s 91.3 12 0.00025 34.4 18.3 115 58-177 140-260 (423)
71 COG1340 Uncharacterized archae 91.3 6.9 0.00015 37.1 13.5 102 97-198 134-242 (294)
72 PRK09039 hypothetical protein; 91.2 13 0.00028 35.2 15.4 16 38-53 43-58 (343)
73 KOG4674 Uncharacterized conser 91.1 35 0.00076 39.5 23.1 199 37-235 125-376 (1822)
74 KOG4674 Uncharacterized conser 91.0 15 0.00033 42.2 17.9 164 45-219 1164-1328(1822)
75 PF14197 Cep57_CLD_2: Centroso 90.9 2.2 4.9E-05 32.0 8.1 59 116-177 10-68 (69)
76 PRK10246 exonuclease subunit S 90.7 27 0.00058 37.6 19.8 100 117-220 776-882 (1047)
77 PF08614 ATG16: Autophagy prot 90.7 1.7 3.7E-05 37.5 8.4 98 36-133 69-166 (194)
78 KOG0612 Rho-associated, coiled 90.5 28 0.00061 38.9 18.7 110 36-145 436-556 (1317)
79 PF11932 DUF3450: Protein of u 90.5 9 0.00019 34.1 13.1 51 117-167 55-105 (251)
80 PF05622 HOOK: HOOK protein; 90.5 0.079 1.7E-06 53.9 0.0 157 60-216 237-416 (713)
81 KOG0250 DNA repair protein RAD 90.4 32 0.00068 37.9 20.2 56 114-172 375-431 (1074)
82 KOG0976 Rho/Rac1-interacting s 90.4 12 0.00027 40.4 15.6 96 42-137 327-436 (1265)
83 KOG0933 Structural maintenance 90.3 27 0.00058 38.5 18.1 78 139-219 787-864 (1174)
84 PHA02562 46 endonuclease subun 90.2 18 0.0004 34.9 20.4 54 126-179 300-353 (562)
85 PF10186 Atg14: UV radiation r 90.1 12 0.00027 32.7 14.1 23 158-180 86-108 (302)
86 PF07106 TBPIP: Tat binding pr 90.0 3.8 8.2E-05 34.4 9.7 62 115-177 76-137 (169)
87 PRK11546 zraP zinc resistance 89.9 1 2.2E-05 38.5 6.2 52 129-180 62-113 (143)
88 KOG4673 Transcription factor T 89.8 1.3 2.8E-05 46.6 8.0 60 118-177 866-925 (961)
89 PF13851 GAS: Growth-arrest sp 89.6 14 0.0003 32.6 13.2 138 63-217 28-169 (201)
90 PF05667 DUF812: Protein of un 89.5 9.2 0.0002 39.1 13.7 93 124-216 327-426 (594)
91 PF07926 TPR_MLP1_2: TPR/MLP1/ 89.2 11 0.00024 30.8 11.6 43 144-186 47-89 (132)
92 PF09726 Macoilin: Transmembra 88.9 32 0.0007 35.9 22.5 180 38-217 422-655 (697)
93 PRK11519 tyrosine kinase; Prov 88.9 13 0.00029 38.1 14.4 111 62-179 267-386 (719)
94 PF12128 DUF3584: Protein of u 88.8 41 0.00088 36.9 22.2 67 114-180 774-840 (1201)
95 TIGR01010 BexC_CtrB_KpsE polys 88.7 6.7 0.00015 36.4 11.3 30 63-92 171-200 (362)
96 KOG4809 Rab6 GTPase-interactin 88.6 8.6 0.00019 39.6 12.6 120 46-169 329-458 (654)
97 PLN03229 acetyl-coenzyme A car 88.4 32 0.0007 36.6 16.9 81 136-218 646-732 (762)
98 PF15070 GOLGA2L5: Putative go 88.2 26 0.00055 36.2 15.8 124 82-216 3-140 (617)
99 TIGR03017 EpsF chain length de 88.0 24 0.00052 33.3 16.7 45 136-180 315-359 (444)
100 PF15294 Leu_zip: Leucine zipp 88.0 15 0.00032 34.6 13.0 118 92-219 84-243 (278)
101 COG4942 Membrane-bound metallo 88.0 30 0.00065 34.4 22.3 48 165-215 201-248 (420)
102 PF10234 Cluap1: Clusterin-ass 88.0 22 0.00047 33.2 14.0 78 113-191 171-252 (267)
103 PF05557 MAD: Mitotic checkpoi 87.9 0.16 3.4E-06 51.8 0.0 20 158-177 259-278 (722)
104 PF10473 CENP-F_leu_zip: Leuci 87.7 16 0.00035 31.0 16.4 68 115-182 49-116 (140)
105 COG0419 SbcC ATPase involved i 87.7 40 0.00088 35.5 21.3 59 18-83 456-515 (908)
106 PRK10246 exonuclease subunit S 87.4 46 0.001 35.9 24.1 50 39-88 528-577 (1047)
107 KOG1029 Endocytic adaptor prot 87.1 22 0.00048 38.4 14.8 83 61-150 436-518 (1118)
108 PF13514 AAA_27: AAA domain 86.9 49 0.0011 35.7 22.5 87 96-182 728-827 (1111)
109 KOG0933 Structural maintenance 86.8 42 0.00092 37.0 16.9 123 59-184 738-878 (1174)
110 PF15619 Lebercilin: Ciliary p 86.7 22 0.00047 31.4 17.5 112 38-153 16-139 (194)
111 KOG0971 Microtubule-associated 85.9 43 0.00092 36.9 16.3 136 94-231 231-370 (1243)
112 PF12592 DUF3763: Protein of u 85.9 4.6 0.0001 29.5 6.7 55 158-212 2-56 (57)
113 KOG1853 LIS1-interacting prote 85.9 33 0.00071 32.7 14.9 122 39-174 46-182 (333)
114 COG3206 GumC Uncharacterized p 85.9 12 0.00025 36.1 11.4 48 134-181 344-391 (458)
115 PF11932 DUF3450: Protein of u 85.5 18 0.00039 32.2 11.8 24 129-152 46-69 (251)
116 COG4942 Membrane-bound metallo 85.4 41 0.0009 33.4 21.5 24 195-218 221-244 (420)
117 TIGR03007 pepcterm_ChnLen poly 85.2 37 0.0008 32.7 14.7 33 60-92 159-191 (498)
118 PF04728 LPP: Lipoprotein leuc 84.9 6.3 0.00014 29.0 7.0 42 126-177 4-45 (56)
119 PF08912 Rho_Binding: Rho Bind 84.8 4.9 0.00011 30.7 6.6 44 123-166 1-44 (69)
120 KOG2129 Uncharacterized conser 84.7 48 0.001 33.6 15.1 121 90-216 154-307 (552)
121 PF07926 TPR_MLP1_2: TPR/MLP1/ 84.6 20 0.00044 29.2 15.7 39 49-87 4-42 (132)
122 PF15619 Lebercilin: Ciliary p 84.6 28 0.0006 30.8 16.9 125 42-179 62-187 (194)
123 COG2433 Uncharacterized conser 84.2 26 0.00056 36.6 13.4 173 53-237 331-531 (652)
124 KOG4603 TBP-1 interacting prot 84.1 31 0.00068 31.0 13.7 97 117-214 78-178 (201)
125 KOG1853 LIS1-interacting prote 83.7 42 0.0009 32.0 18.8 149 56-218 14-184 (333)
126 KOG1924 RhoA GTPase effector D 83.7 1.2 2.7E-05 47.3 4.0 45 189-235 790-849 (1102)
127 PLN03229 acetyl-coenzyme A car 82.8 27 0.00059 37.1 13.2 76 137-217 509-590 (762)
128 PRK01156 chromosome segregatio 82.3 67 0.0015 33.5 22.0 24 143-166 309-332 (895)
129 TIGR01010 BexC_CtrB_KpsE polys 81.8 40 0.00087 31.3 12.8 61 155-215 241-309 (362)
130 PF13805 Pil1: Eisosome compon 81.5 15 0.00032 34.5 9.8 129 91-238 121-251 (271)
131 TIGR03794 NHPM_micro_HlyD NHPM 81.5 49 0.0011 31.4 16.5 34 193-226 229-263 (421)
132 PRK06569 F0F1 ATP synthase sub 81.2 35 0.00076 29.5 12.0 119 33-169 33-152 (155)
133 TIGR00634 recN DNA repair prot 81.2 62 0.0013 32.3 15.4 63 113-175 303-365 (563)
134 KOG0999 Microtubule-associated 80.8 67 0.0015 33.7 14.8 126 53-181 41-212 (772)
135 PF10186 Atg14: UV radiation r 80.8 38 0.00083 29.7 16.9 15 68-82 26-40 (302)
136 PF11559 ADIP: Afadin- and alp 80.6 30 0.00066 28.4 16.3 88 50-158 40-127 (151)
137 PF14817 HAUS5: HAUS augmin-li 79.9 55 0.0012 34.1 14.1 105 115-219 308-438 (632)
138 PF10473 CENP-F_leu_zip: Leuci 79.9 37 0.0008 28.9 14.4 73 99-177 22-94 (140)
139 PF14662 CCDC155: Coiled-coil 79.9 46 0.00099 30.0 19.2 38 39-76 20-57 (193)
140 KOG2264 Exostosin EXT1L [Signa 79.8 8.5 0.00018 40.2 8.2 52 119-180 87-138 (907)
141 KOG0249 LAR-interacting protei 79.8 51 0.0011 35.4 13.8 147 39-215 96-254 (916)
142 KOG4807 F-actin binding protei 79.8 73 0.0016 32.2 15.7 87 101-190 439-553 (593)
143 PF05837 CENP-H: Centromere pr 79.7 18 0.0004 28.8 8.6 64 114-181 13-76 (106)
144 PF03962 Mnd1: Mnd1 family; I 79.7 9.7 0.00021 33.2 7.6 38 156-193 103-140 (188)
145 TIGR03017 EpsF chain length de 79.7 56 0.0012 30.9 15.9 33 60-92 169-201 (444)
146 KOG0964 Structural maintenance 79.6 1.1E+02 0.0023 34.1 20.5 108 41-148 692-822 (1200)
147 PF05557 MAD: Mitotic checkpoi 79.6 0.58 1.3E-05 47.7 0.0 117 103-219 290-427 (722)
148 KOG3478 Prefoldin subunit 6, K 79.5 36 0.00078 28.5 11.4 99 115-223 9-115 (120)
149 PF06810 Phage_GP20: Phage min 79.5 13 0.00028 31.6 8.1 62 117-178 12-73 (155)
150 KOG0996 Structural maintenance 79.4 1.2E+02 0.0025 34.3 20.3 160 49-221 430-600 (1293)
151 PF09730 BicD: Microtubule-ass 79.4 61 0.0013 34.3 14.3 53 163-216 121-181 (717)
152 PF09728 Taxilin: Myosin-like 79.2 35 0.00075 32.1 11.5 70 115-184 26-95 (309)
153 TIGR01005 eps_transp_fam exopo 79.1 80 0.0017 32.3 16.4 27 58-84 197-223 (754)
154 PF09787 Golgin_A5: Golgin sub 79.0 72 0.0016 31.7 20.0 22 158-179 276-297 (511)
155 PF07889 DUF1664: Protein of u 78.9 19 0.00042 30.1 8.7 65 112-179 44-112 (126)
156 PRK10361 DNA recombination pro 78.8 77 0.0017 32.0 19.7 86 127-215 101-196 (475)
157 PF08614 ATG16: Autophagy prot 78.4 21 0.00046 30.7 9.2 39 63-112 75-113 (194)
158 PF14197 Cep57_CLD_2: Centroso 78.0 23 0.0005 26.6 8.1 50 58-107 1-50 (69)
159 TIGR01000 bacteriocin_acc bact 77.8 69 0.0015 30.9 16.8 41 187-227 287-327 (457)
160 TIGR03752 conj_TIGR03752 integ 77.7 24 0.00052 35.6 10.5 74 41-148 66-139 (472)
161 PF10481 CENP-F_N: Cenp-F N-te 77.6 54 0.0012 31.3 12.2 78 104-184 53-130 (307)
162 PF04880 NUDE_C: NUDE protein, 77.3 1.5 3.2E-05 38.3 1.8 35 37-76 17-51 (166)
163 KOG0612 Rho-associated, coiled 77.2 1.4E+02 0.0029 33.9 19.8 10 42-51 476-485 (1317)
164 PF13094 CENP-Q: CENP-Q, a CEN 77.0 21 0.00046 29.7 8.6 34 134-167 121-154 (160)
165 PF02050 FliJ: Flagellar FliJ 77.0 27 0.00059 25.8 11.4 93 67-161 3-95 (123)
166 COG0419 SbcC ATPase involved i 76.8 1.1E+02 0.0023 32.5 22.3 162 58-220 270-439 (908)
167 PF04156 IncA: IncA protein; 76.8 44 0.00095 28.1 14.3 50 38-87 85-134 (191)
168 cd07651 F-BAR_PombeCdc15_like 76.7 52 0.0011 28.9 17.6 141 50-206 62-211 (236)
169 PF07794 DUF1633: Protein of u 76.6 53 0.0012 34.1 12.6 118 97-223 593-723 (790)
170 KOG0994 Extracellular matrix g 76.3 1.2E+02 0.0025 34.7 15.6 42 66-107 1461-1505(1758)
171 KOG1962 B-cell receptor-associ 76.1 49 0.0011 30.2 11.2 49 137-185 163-215 (216)
172 KOG1924 RhoA GTPase effector D 75.9 3.2 7E-05 44.4 4.1 25 193-217 896-920 (1102)
173 PF06120 Phage_HK97_TLTM: Tail 75.7 47 0.001 31.6 11.4 65 116-180 39-105 (301)
174 PF11559 ADIP: Afadin- and alp 74.9 46 0.00099 27.3 12.4 78 109-186 50-138 (151)
175 PRK11578 macrolide transporter 74.5 73 0.0016 29.5 12.4 98 116-227 97-194 (370)
176 TIGR02231 conserved hypothetic 74.3 38 0.00081 33.3 10.8 10 228-237 199-208 (525)
177 TIGR02971 heterocyst_DevB ABC 74.2 67 0.0015 29.0 15.6 33 195-227 183-215 (327)
178 PF05082 Rop-like: Rop-like; 74.1 30 0.00064 26.2 7.8 59 118-179 2-60 (66)
179 KOG3433 Protein involved in me 74.1 15 0.00032 33.2 7.2 58 160-217 85-142 (203)
180 PF02050 FliJ: Flagellar FliJ 74.1 33 0.00072 25.4 12.2 84 115-198 9-94 (123)
181 PF04350 PilO: Pilus assembly 74.1 4.9 0.00011 31.8 3.9 47 136-182 3-49 (144)
182 PF07106 TBPIP: Tat binding pr 74.0 33 0.00071 28.8 9.0 62 118-180 72-133 (169)
183 PF11180 DUF2968: Protein of u 73.4 60 0.0013 29.2 10.9 83 68-152 95-181 (192)
184 PF14735 HAUS4: HAUS augmin-li 73.3 75 0.0016 29.1 14.6 87 127-217 142-228 (238)
185 PF10498 IFT57: Intra-flagella 73.2 92 0.002 30.1 14.0 97 99-220 253-350 (359)
186 PRK03598 putative efflux pump 73.1 74 0.0016 29.0 14.9 89 139-227 121-214 (331)
187 KOG2629 Peroxisomal membrane a 72.8 26 0.00056 33.5 8.9 75 105-179 119-198 (300)
188 PF08172 CASP_C: CASP C termin 72.5 50 0.0011 30.3 10.5 43 158-214 81-123 (248)
189 PF05483 SCP-1: Synaptonemal c 72.4 1.4E+02 0.0031 31.9 21.2 156 52-216 531-686 (786)
190 PF05911 DUF869: Plant protein 72.4 1.4E+02 0.0031 31.9 17.2 68 84-154 60-135 (769)
191 PF05667 DUF812: Protein of un 72.2 1.2E+02 0.0027 31.2 19.4 45 37-81 317-361 (594)
192 PF02403 Seryl_tRNA_N: Seryl-t 71.7 44 0.00096 25.8 10.7 41 106-146 24-64 (108)
193 PRK10361 DNA recombination pro 71.2 1.1E+02 0.0023 31.0 13.1 57 94-150 36-92 (475)
194 PF06785 UPF0242: Uncharacteri 70.9 83 0.0018 31.0 11.9 38 115-152 138-175 (401)
195 PF07139 DUF1387: Protein of u 70.7 1E+02 0.0022 29.5 12.4 98 50-169 155-256 (302)
196 KOG0980 Actin-binding protein 70.3 1.7E+02 0.0038 32.1 20.8 72 136-207 470-545 (980)
197 PF09730 BicD: Microtubule-ass 70.2 1.2E+02 0.0025 32.3 13.6 117 34-160 352-472 (717)
198 TIGR00414 serS seryl-tRNA synt 70.0 38 0.00083 32.9 9.6 30 115-144 34-63 (418)
199 PF10146 zf-C4H2: Zinc finger- 69.7 89 0.0019 28.4 12.8 51 118-171 53-103 (230)
200 KOG4403 Cell surface glycoprot 69.3 24 0.00051 35.8 8.1 18 202-220 307-324 (575)
201 COG5185 HEC1 Protein involved 68.8 1.2E+02 0.0026 31.3 12.9 145 66-218 253-402 (622)
202 PF04728 LPP: Lipoprotein leuc 68.8 28 0.00062 25.6 6.5 36 120-155 5-40 (56)
203 TIGR02231 conserved hypothetic 68.7 56 0.0012 32.2 10.5 28 191-218 145-172 (525)
204 cd00890 Prefoldin Prefoldin is 68.6 54 0.0012 25.5 11.0 43 135-177 2-44 (129)
205 COG2433 Uncharacterized conser 67.9 83 0.0018 33.0 11.8 58 155-213 473-531 (652)
206 PF06008 Laminin_I: Laminin Do 67.9 91 0.002 27.9 16.4 147 34-196 17-168 (264)
207 TIGR03185 DNA_S_dndD DNA sulfu 67.7 1.5E+02 0.0032 30.2 16.1 17 94-110 391-407 (650)
208 PF05622 HOOK: HOOK protein; 67.6 1.7 3.8E-05 44.3 0.0 133 40-172 238-379 (713)
209 PF10168 Nup88: Nuclear pore c 67.6 1.7E+02 0.0037 30.9 19.5 75 142-219 635-713 (717)
210 PF02403 Seryl_tRNA_N: Seryl-t 67.2 51 0.0011 25.4 8.2 30 113-142 69-98 (108)
211 PRK04778 septation ring format 67.2 1.4E+02 0.0031 29.9 23.0 105 113-218 378-503 (569)
212 PRK11519 tyrosine kinase; Prov 66.7 1.2E+02 0.0025 31.4 12.8 22 191-212 377-398 (719)
213 smart00806 AIP3 Actin interact 66.3 1.5E+02 0.0032 29.8 14.2 119 68-186 154-280 (426)
214 PRK03947 prefoldin subunit alp 66.3 69 0.0015 25.9 10.7 39 179-217 96-134 (140)
215 PRK05431 seryl-tRNA synthetase 65.8 47 0.001 32.3 9.3 36 110-145 27-62 (425)
216 TIGR02473 flagell_FliJ flagell 65.0 67 0.0014 25.3 13.5 84 115-198 17-110 (141)
217 KOG2391 Vacuolar sorting prote 65.0 36 0.00078 33.3 8.2 88 116-205 207-295 (365)
218 PF09304 Cortex-I_coil: Cortex 64.9 79 0.0017 26.1 9.9 61 118-188 23-83 (107)
219 PF12329 TMF_DNA_bd: TATA elem 64.5 59 0.0013 24.5 8.0 54 87-150 5-58 (74)
220 PF00170 bZIP_1: bZIP transcri 64.3 38 0.00082 24.1 6.4 36 117-152 25-60 (64)
221 cd07627 BAR_Vps5p The Bin/Amph 64.2 99 0.0022 27.0 14.6 113 68-180 34-167 (216)
222 PF11705 RNA_pol_3_Rpc31: DNA- 64.2 26 0.00057 31.1 6.8 28 31-58 42-69 (233)
223 PF13851 GAS: Growth-arrest sp 64.2 1E+02 0.0022 27.1 19.0 106 69-178 62-172 (201)
224 PF05266 DUF724: Protein of un 63.6 1E+02 0.0023 27.1 10.3 79 97-178 106-188 (190)
225 smart00338 BRLZ basic region l 63.4 36 0.00079 24.2 6.2 35 117-151 25-59 (65)
226 TIGR02971 heterocyst_DevB ABC 62.8 1.2E+02 0.0026 27.4 15.9 61 121-181 93-153 (327)
227 KOG0980 Actin-binding protein 62.7 2.4E+02 0.0053 31.0 19.3 97 105-201 488-589 (980)
228 PRK10476 multidrug resistance 61.3 1.3E+02 0.0029 27.5 12.8 25 203-227 195-219 (346)
229 COG3524 KpsE Capsule polysacch 61.0 30 0.00065 33.7 6.8 29 153-181 248-276 (372)
230 PF13747 DUF4164: Domain of un 61.0 78 0.0017 24.7 8.5 70 78-148 10-83 (89)
231 PF08581 Tup_N: Tup N-terminal 60.7 76 0.0017 24.5 9.1 38 114-151 7-44 (79)
232 PF10146 zf-C4H2: Zinc finger- 60.4 1.4E+02 0.0029 27.3 13.8 31 120-150 34-64 (230)
233 PF05008 V-SNARE: Vesicle tran 59.9 19 0.00041 26.3 4.3 39 118-156 39-78 (79)
234 PF08581 Tup_N: Tup N-terminal 59.3 81 0.0018 24.4 7.9 60 158-218 6-77 (79)
235 KOG4643 Uncharacterized coiled 59.2 2.9E+02 0.0062 31.0 14.3 147 39-197 189-335 (1195)
236 KOG0288 WD40 repeat protein Ti 58.4 1.7E+02 0.0038 29.5 11.7 49 96-147 43-91 (459)
237 KOG2264 Exostosin EXT1L [Signa 58.3 59 0.0013 34.3 8.8 69 106-177 81-149 (907)
238 TIGR03794 NHPM_micro_HlyD NHPM 58.1 1.7E+02 0.0037 27.8 16.7 21 199-219 228-248 (421)
239 COG4372 Uncharacterized protei 57.8 2.2E+02 0.0047 28.8 18.9 26 69-94 81-106 (499)
240 KOG3119 Basic region leucine z 57.8 42 0.00092 30.8 7.1 52 111-179 201-252 (269)
241 PF09486 HrpB7: Bacterial type 57.7 1.3E+02 0.0028 26.1 13.3 91 50-153 10-100 (158)
242 PRK15178 Vi polysaccharide exp 56.4 1.1E+02 0.0024 30.6 10.1 65 152-216 310-383 (434)
243 PF10168 Nup88: Nuclear pore c 55.8 2.5E+02 0.0054 29.7 13.0 90 48-147 507-601 (717)
244 PF04111 APG6: Autophagy prote 55.5 1.5E+02 0.0033 27.8 10.5 35 119-153 100-134 (314)
245 PF08826 DMPK_coil: DMPK coile 55.1 84 0.0018 23.3 8.5 53 124-177 7-60 (61)
246 PF14362 DUF4407: Domain of un 55.0 1.7E+02 0.0036 26.6 16.9 36 163-198 218-253 (301)
247 cd00632 Prefoldin_beta Prefold 55.0 99 0.0021 24.1 10.3 25 117-141 5-29 (105)
248 COG3883 Uncharacterized protei 55.0 1.2E+02 0.0027 28.4 9.7 34 116-149 43-76 (265)
249 PRK12704 phosphodiesterase; Pr 55.0 2.4E+02 0.0052 28.5 16.4 42 137-178 91-132 (520)
250 TIGR01730 RND_mfp RND family e 54.8 1.4E+02 0.0031 26.2 9.7 67 140-227 79-145 (322)
251 PF05529 Bap31: B-cell recepto 54.7 87 0.0019 26.7 8.1 35 135-172 157-191 (192)
252 PF12004 DUF3498: Domain of un 54.6 4.1 8.9E-05 41.0 0.0 30 84-113 423-452 (495)
253 KOG0979 Structural maintenance 54.4 3.5E+02 0.0076 30.2 19.8 171 43-221 176-362 (1072)
254 PF10243 MIP-T3: Microtubule-b 54.4 4.1 9E-05 40.4 0.0 134 61-216 390-527 (539)
255 PF02183 HALZ: Homeobox associ 54.1 43 0.00093 23.3 5.0 35 114-148 8-42 (45)
256 KOG0250 DNA repair protein RAD 53.8 3.6E+02 0.0078 30.2 21.5 46 43-88 202-247 (1074)
257 PF11598 COMP: Cartilage oligo 53.8 62 0.0013 22.8 5.8 35 136-180 5-39 (45)
258 PF12777 MT: Microtubule-bindi 53.5 1E+02 0.0023 28.9 9.1 92 110-201 213-311 (344)
259 PF14932 HAUS-augmin3: HAUS au 53.3 1.1E+02 0.0025 27.6 9.0 66 100-165 102-169 (256)
260 PF04094 DUF390: Protein of un 53.3 53 0.0012 35.1 7.7 68 131-212 381-452 (828)
261 PF10153 DUF2361: Uncharacteri 52.9 1.3E+02 0.0028 24.8 10.4 38 43-80 2-39 (114)
262 PF08776 VASP_tetra: VASP tetr 52.8 76 0.0016 22.1 6.1 10 165-174 28-37 (40)
263 PF06005 DUF904: Protein of un 52.8 81 0.0017 23.9 6.7 42 38-79 8-56 (72)
264 KOG0976 Rho/Rac1-interacting s 52.8 3.6E+02 0.0079 29.9 17.1 47 97-143 197-243 (1265)
265 PF13935 Ead_Ea22: Ead/Ea22-li 52.7 72 0.0016 26.4 7.1 42 37-78 70-113 (139)
266 PF10805 DUF2730: Protein of u 52.7 90 0.002 24.8 7.4 51 99-150 47-97 (106)
267 PRK13453 F0F1 ATP synthase sub 52.6 1.4E+02 0.0031 25.2 11.3 85 101-190 49-134 (173)
268 PF03962 Mnd1: Mnd1 family; I 52.4 1.6E+02 0.0035 25.7 12.5 47 133-179 104-151 (188)
269 PF09731 Mitofilin: Mitochondr 52.4 2.5E+02 0.0054 27.9 18.0 136 67-204 249-398 (582)
270 PRK01156 chromosome segregatio 52.4 3E+02 0.0065 28.8 20.8 16 135-150 684-699 (895)
271 PF06156 DUF972: Protein of un 52.1 93 0.002 25.2 7.4 43 136-181 12-54 (107)
272 PRK06800 fliH flagellar assemb 51.9 1.1E+02 0.0024 28.0 8.5 51 134-184 47-101 (228)
273 TIGR03495 phage_LysB phage lys 51.8 1.3E+02 0.0028 25.5 8.5 66 39-104 24-92 (135)
274 PF15463 ECM11: Extracellular 51.7 1.1E+02 0.0024 25.2 8.1 48 124-171 86-134 (139)
275 KOG0243 Kinesin-like protein [ 51.7 3.9E+02 0.0084 29.9 16.4 122 32-160 367-511 (1041)
276 KOG4687 Uncharacterized coiled 51.6 2.2E+02 0.0049 27.6 10.9 25 131-155 82-106 (389)
277 PRK11020 hypothetical protein; 51.4 85 0.0018 26.4 7.2 56 115-182 2-57 (118)
278 PF14966 DNA_repr_REX1B: DNA r 51.3 53 0.0012 26.0 5.8 57 87-144 40-96 (97)
279 PRK07248 hypothetical protein; 50.7 1.1E+02 0.0023 23.1 8.4 82 113-209 3-84 (87)
280 PF05700 BCAS2: Breast carcino 50.7 1.8E+02 0.0039 25.8 10.6 37 55-91 136-172 (221)
281 PF05911 DUF869: Plant protein 50.6 3.5E+02 0.0076 29.1 13.9 91 118-208 610-718 (769)
282 PF07445 priB_priC: Primosomal 50.6 1.2E+02 0.0025 26.2 8.3 60 120-181 104-163 (173)
283 TIGR03752 conj_TIGR03752 integ 50.5 69 0.0015 32.4 7.7 24 130-153 107-130 (472)
284 TIGR01069 mutS2 MutS2 family p 50.2 3.4E+02 0.0073 28.8 13.0 11 162-172 578-588 (771)
285 COG5178 PRP8 U5 snRNP spliceos 49.9 15 0.00034 41.3 3.3 15 32-46 26-41 (2365)
286 PF05465 Halo_GVPC: Halobacter 49.9 22 0.00048 23.2 2.9 23 158-180 1-23 (32)
287 PF01576 Myosin_tail_1: Myosin 49.7 5.5 0.00012 42.1 0.0 104 114-220 528-631 (859)
288 smart00502 BBC B-Box C-termina 49.7 1.1E+02 0.0024 23.0 12.0 44 130-182 55-98 (127)
289 PF01576 Myosin_tail_1: Myosin 49.6 5.5 0.00012 42.1 0.0 139 42-183 329-470 (859)
290 PF03915 AIP3: Actin interacti 49.4 1.3E+02 0.0028 29.9 9.3 118 68-187 150-277 (424)
291 PRK15396 murein lipoprotein; P 48.7 74 0.0016 24.7 6.1 10 120-129 27-36 (78)
292 PRK14474 F0F1 ATP synthase sub 48.3 2.1E+02 0.0046 25.9 11.3 85 101-190 36-121 (250)
293 PF11068 YlqD: YlqD protein; 48.2 1.6E+02 0.0036 24.6 8.5 36 114-155 15-50 (131)
294 PHA02414 hypothetical protein 48.0 82 0.0018 26.0 6.5 73 91-170 1-78 (111)
295 PF05615 THOC7: Tho complex su 48.0 1.5E+02 0.0032 24.1 9.7 64 114-180 49-112 (139)
296 PF15035 Rootletin: Ciliary ro 47.8 1.9E+02 0.0042 25.3 16.7 116 96-217 59-178 (182)
297 KOG3478 Prefoldin subunit 6, K 47.8 1.7E+02 0.0037 24.6 11.3 76 97-175 22-109 (120)
298 PF04880 NUDE_C: NUDE protein, 47.6 13 0.00028 32.5 2.0 44 91-137 4-47 (166)
299 PF14916 CCDC92: Coiled-coil d 47.5 45 0.00098 24.8 4.5 35 138-172 2-37 (60)
300 PF13870 DUF4201: Domain of un 47.2 1.7E+02 0.0038 24.6 14.2 18 200-217 147-164 (177)
301 COG1340 Uncharacterized archae 47.2 2.6E+02 0.0057 26.7 20.4 97 111-214 107-209 (294)
302 PRK09973 putative outer membra 47.1 1.2E+02 0.0026 24.1 7.1 28 119-146 25-52 (85)
303 PF04420 CHD5: CHD5-like prote 46.8 38 0.00082 28.8 4.6 35 146-180 63-97 (161)
304 COG4238 Murein lipoprotein [Ce 46.8 53 0.0011 25.8 5.0 29 125-153 25-53 (78)
305 KOG1937 Uncharacterized conser 46.8 3.4E+02 0.0074 27.9 18.9 118 93-213 388-517 (521)
306 PF05791 Bacillus_HBL: Bacillu 46.5 1.8E+02 0.0038 25.1 8.8 48 131-181 134-181 (184)
307 PF06156 DUF972: Protein of un 46.0 1.2E+02 0.0026 24.5 7.2 15 97-111 4-18 (107)
308 PF06705 SF-assemblin: SF-asse 45.9 2.2E+02 0.0047 25.4 13.8 41 161-208 119-159 (247)
309 PF10212 TTKRSYEDQ: Predicted 45.9 3.6E+02 0.0077 27.8 13.3 54 161-217 460-513 (518)
310 KOG0982 Centrosomal protein Nu 45.3 2E+02 0.0044 29.2 10.0 44 114-157 377-421 (502)
311 TIGR03185 DNA_S_dndD DNA sulfu 45.1 3.5E+02 0.0076 27.5 21.2 52 128-180 394-445 (650)
312 KOG2441 mRNA splicing factor/p 44.4 82 0.0018 31.8 7.1 19 39-57 260-279 (506)
313 COG3206 GumC Uncharacterized p 44.2 3E+02 0.0066 26.5 16.7 53 127-182 287-343 (458)
314 PF04201 TPD52: Tumour protein 44.0 1.4E+02 0.0031 26.2 7.8 46 114-162 32-92 (162)
315 PLN02678 seryl-tRNA synthetase 43.8 1.9E+02 0.0042 28.8 9.6 26 118-143 40-65 (448)
316 COG1322 Predicted nuclease of 43.7 3.5E+02 0.0076 27.1 18.4 97 116-221 96-194 (448)
317 TIGR03319 YmdA_YtgF conserved 43.6 3.6E+02 0.0078 27.2 16.3 26 151-176 106-131 (514)
318 PF12761 End3: Actin cytoskele 43.5 2.1E+02 0.0046 25.8 9.0 23 64-86 98-120 (195)
319 PF03961 DUF342: Protein of un 43.2 2.1E+02 0.0045 27.8 9.6 11 206-216 397-407 (451)
320 PRK15396 murein lipoprotein; P 42.9 1.2E+02 0.0027 23.4 6.5 38 115-152 29-66 (78)
321 COG1566 EmrA Multidrug resista 42.7 2.3E+02 0.0049 27.5 9.6 22 206-227 198-219 (352)
322 TIGR00998 8a0101 efflux pump m 41.9 2.6E+02 0.0056 25.1 15.5 23 205-227 193-215 (334)
323 COG0497 RecN ATPase involved i 41.8 4.2E+02 0.0091 27.5 15.3 72 120-191 306-377 (557)
324 cd07648 F-BAR_FCHO The F-BAR ( 41.7 2.5E+02 0.0055 24.9 16.1 42 163-207 164-205 (261)
325 KOG1937 Uncharacterized conser 41.3 4.2E+02 0.009 27.3 18.4 19 190-208 344-362 (521)
326 KOG4673 Transcription factor T 41.3 5.1E+02 0.011 28.3 17.2 45 63-109 424-468 (961)
327 PF05794 Tcp11: T-complex prot 41.1 3.2E+02 0.007 26.0 12.0 53 128-194 137-189 (441)
328 COG1730 GIM5 Predicted prefold 40.7 2.3E+02 0.0051 24.2 10.7 34 58-91 9-42 (145)
329 PF10205 KLRAQ: Predicted coil 40.6 2E+02 0.0044 23.5 8.5 47 102-151 27-73 (102)
330 PRK06231 F0F1 ATP synthase sub 40.5 2.6E+02 0.0056 24.6 10.8 97 100-207 78-175 (205)
331 PF05103 DivIVA: DivIVA protei 40.3 19 0.00041 28.3 1.8 29 60-88 30-58 (131)
332 PF05791 Bacillus_HBL: Bacillu 40.3 97 0.0021 26.7 6.2 53 115-173 128-180 (184)
333 PRK07720 fliJ flagellar biosyn 40.2 2E+02 0.0044 23.3 11.5 44 155-198 70-113 (146)
334 PF05478 Prominin: Prominin; 40.1 4.7E+02 0.01 27.6 16.5 118 42-170 188-327 (806)
335 KOG0982 Centrosomal protein Nu 39.6 4.3E+02 0.0094 27.0 19.1 49 38-86 219-267 (502)
336 PF10211 Ax_dynein_light: Axon 39.6 2.6E+02 0.0056 24.4 14.0 19 161-179 168-186 (189)
337 PRK10698 phage shock protein P 39.6 2.8E+02 0.006 24.8 13.0 86 59-144 49-146 (222)
338 PF04949 Transcrip_act: Transc 39.5 2.7E+02 0.0058 24.5 10.7 87 116-212 54-147 (159)
339 TIGR03319 YmdA_YtgF conserved 39.2 4.2E+02 0.0091 26.7 16.5 24 167-190 160-183 (514)
340 PF04012 PspA_IM30: PspA/IM30 39.0 2.5E+02 0.0055 24.2 19.3 105 37-144 26-131 (221)
341 COG1382 GimC Prefoldin, chaper 38.8 2.3E+02 0.0051 23.7 8.1 71 102-175 28-110 (119)
342 TIGR02894 DNA_bind_RsfA transc 38.7 2.1E+02 0.0045 25.2 8.0 55 157-211 98-152 (161)
343 PF01920 Prefoldin_2: Prefoldi 38.6 1.7E+02 0.0036 21.9 9.8 20 195-214 80-99 (106)
344 COG4920 Predicted membrane pro 38.5 25 0.00054 32.5 2.4 34 170-204 64-104 (249)
345 KOG4657 Uncharacterized conser 38.4 3.4E+02 0.0074 25.4 11.3 57 91-147 38-94 (246)
346 PRK13169 DNA replication intia 38.1 1.9E+02 0.0041 23.7 7.2 22 160-181 33-54 (110)
347 PF10226 DUF2216: Uncharacteri 37.8 3.1E+02 0.0068 24.9 10.2 27 42-68 49-75 (195)
348 PF07139 DUF1387: Protein of u 37.7 3.8E+02 0.0082 25.8 10.9 98 38-148 175-275 (302)
349 PF14182 YgaB: YgaB-like prote 37.6 2E+02 0.0044 22.6 7.9 40 134-181 26-65 (79)
350 PF14257 DUF4349: Domain of un 37.2 2.1E+02 0.0046 25.4 8.1 68 113-181 127-194 (262)
351 PRK14127 cell division protein 37.1 1.2E+02 0.0025 24.9 5.9 61 43-110 32-101 (109)
352 cd07685 F-BAR_Fes The F-BAR (F 36.9 3.5E+02 0.0076 25.2 10.1 47 131-179 68-114 (237)
353 PRK15136 multidrug efflux syst 36.6 3.8E+02 0.0082 25.5 11.2 21 207-227 206-226 (390)
354 PRK00888 ftsB cell division pr 36.6 61 0.0013 25.9 4.1 31 115-145 31-61 (105)
355 PRK10929 putative mechanosensi 36.3 6.6E+02 0.014 28.2 16.3 151 48-220 51-202 (1109)
356 PF07439 DUF1515: Protein of u 36.3 1.9E+02 0.0041 24.1 7.0 64 65-128 11-74 (112)
357 PF00261 Tropomyosin: Tropomyo 36.2 3.1E+02 0.0067 24.3 17.7 64 116-179 97-164 (237)
358 PRK13455 F0F1 ATP synthase sub 36.0 2.7E+02 0.0059 23.6 10.7 84 101-189 58-142 (184)
359 PF05103 DivIVA: DivIVA protei 35.8 16 0.00034 28.7 0.7 49 38-86 22-70 (131)
360 PLN02320 seryl-tRNA synthetase 35.8 4.1E+02 0.009 27.1 10.6 22 121-142 103-124 (502)
361 PRK05431 seryl-tRNA synthetase 35.7 2.5E+02 0.0053 27.4 8.8 15 160-174 84-98 (425)
362 KOG4571 Activating transcripti 35.6 92 0.002 29.8 5.7 48 45-92 245-292 (294)
363 PF03245 Phage_lysis: Bacterio 35.2 1.9E+02 0.0042 23.6 7.0 26 195-220 39-64 (125)
364 COG3166 PilN Tfp pilus assembl 35.2 1.8E+02 0.0038 26.2 7.2 54 139-193 55-108 (206)
365 PF03961 DUF342: Protein of un 35.1 3.1E+02 0.0068 26.6 9.4 16 132-147 382-397 (451)
366 PRK13169 DNA replication intia 34.9 2.1E+02 0.0046 23.4 7.1 15 97-111 4-18 (110)
367 PRK13922 rod shape-determining 34.9 1.9E+02 0.0041 25.9 7.4 17 165-181 95-111 (276)
368 PF04799 Fzo_mitofusin: fzo-li 34.7 1.5E+02 0.0032 26.2 6.5 68 54-125 91-158 (171)
369 COG1842 PspA Phage shock prote 34.7 3.5E+02 0.0076 24.5 15.3 71 38-108 28-99 (225)
370 cd07652 F-BAR_Rgd1 The F-BAR ( 34.7 3.4E+02 0.0073 24.3 14.2 38 50-87 67-104 (234)
371 PRK13729 conjugal transfer pil 34.5 1.1E+02 0.0023 31.1 6.2 34 116-149 81-114 (475)
372 PF10018 Med4: Vitamin-D-recep 34.5 2.5E+02 0.0054 24.2 7.8 38 122-159 26-63 (188)
373 PF09755 DUF2046: Uncharacteri 34.5 4.3E+02 0.0094 25.5 18.8 152 28-199 11-175 (310)
374 PF14282 FlxA: FlxA-like prote 34.3 1.6E+02 0.0035 23.4 6.2 23 155-177 50-72 (106)
375 PF14257 DUF4349: Domain of un 34.2 2.2E+02 0.0047 25.4 7.7 58 158-220 134-191 (262)
376 PF08898 DUF1843: Domain of un 34.2 36 0.00078 24.9 2.2 19 202-220 35-53 (53)
377 PRK00106 hypothetical protein; 34.0 5.4E+02 0.012 26.4 16.6 42 138-179 107-148 (535)
378 TIGR02473 flagell_FliJ flagell 33.9 2.3E+02 0.005 22.2 11.6 27 68-94 19-45 (141)
379 KOG0243 Kinesin-like protein [ 33.8 7.2E+02 0.016 27.9 15.4 128 92-219 402-546 (1041)
380 PLN02678 seryl-tRNA synthetase 33.8 2.7E+02 0.0058 27.8 8.8 15 160-174 89-103 (448)
381 PF02841 GBP_C: Guanylate-bind 33.7 3.8E+02 0.0081 24.5 13.2 8 203-210 289-296 (297)
382 PF09744 Jnk-SapK_ap_N: JNK_SA 33.5 3.1E+02 0.0068 23.6 12.1 32 115-146 86-117 (158)
383 cd07674 F-BAR_FCHO1 The F-BAR 33.3 3.6E+02 0.0079 24.3 16.3 32 50-81 62-93 (261)
384 cd00584 Prefoldin_alpha Prefol 33.3 2.4E+02 0.0053 22.3 10.8 40 130-169 4-43 (129)
385 PF05377 FlaC_arch: Flagella a 33.2 68 0.0015 23.6 3.5 23 158-180 9-31 (55)
386 cd07653 F-BAR_CIP4-like The F- 33.1 3.3E+02 0.0072 23.8 17.4 23 50-72 67-89 (251)
387 PF12718 Tropomyosin_1: Tropom 33.0 2.9E+02 0.0063 23.1 15.2 25 126-150 36-60 (143)
388 PRK12704 phosphodiesterase; Pr 33.0 5.3E+02 0.012 26.1 16.6 44 106-149 112-155 (520)
389 PF08898 DUF1843: Domain of un 32.5 93 0.002 22.8 4.1 37 139-175 14-50 (53)
390 cd00890 Prefoldin Prefoldin is 32.4 1.8E+02 0.004 22.5 6.2 41 129-169 3-43 (129)
391 PF04420 CHD5: CHD5-like prote 32.4 94 0.002 26.3 4.8 59 152-219 36-94 (161)
392 PF04012 PspA_IM30: PspA/IM30 32.1 3.3E+02 0.0072 23.4 13.5 23 191-213 119-141 (221)
393 COG1382 GimC Prefoldin, chaper 32.1 3E+02 0.0066 23.0 10.2 94 115-219 10-112 (119)
394 PF06248 Zw10: Centromere/kine 32.1 5.4E+02 0.012 25.9 12.9 20 197-216 121-140 (593)
395 PF09006 Surfac_D-trimer: Lung 32.1 77 0.0017 22.6 3.5 28 158-185 1-28 (46)
396 PRK10132 hypothetical protein; 31.8 2.8E+02 0.0061 22.5 8.6 19 218-236 83-105 (108)
397 PF06005 DUF904: Protein of un 31.7 2.3E+02 0.005 21.4 8.4 19 59-77 15-33 (72)
398 PRK14142 heat shock protein Gr 31.6 2.8E+02 0.0061 25.5 8.0 65 12-78 13-77 (223)
399 PF03954 Lectin_N: Hepatic lec 31.4 2.3E+02 0.005 24.4 7.0 79 116-210 60-138 (138)
400 PF09969 DUF2203: Uncharacteri 31.4 1.8E+02 0.0039 23.9 6.2 68 48-115 6-78 (120)
401 KOG1981 SOK1 kinase belonging 31.3 6.1E+02 0.013 26.2 11.7 130 49-215 141-277 (513)
402 PTZ00454 26S protease regulato 31.2 1.2E+02 0.0026 29.4 5.9 52 32-83 13-64 (398)
403 cd07652 F-BAR_Rgd1 The F-BAR ( 31.0 3.9E+02 0.0084 23.9 10.6 51 130-183 102-152 (234)
404 PF02183 HALZ: Homeobox associ 30.9 90 0.002 21.6 3.7 28 114-141 15-42 (45)
405 PF10805 DUF2730: Protein of u 30.7 2.7E+02 0.0059 22.1 8.3 28 117-144 34-61 (106)
406 TIGR03689 pup_AAA proteasome A 30.7 79 0.0017 32.0 4.7 40 44-83 4-43 (512)
407 PF10704 DUF2508: Protein of u 30.6 2.2E+02 0.0049 21.0 7.2 49 159-207 15-63 (71)
408 COG3352 FlaC Putative archaeal 30.6 3.8E+02 0.0082 23.6 10.6 85 95-181 45-133 (157)
409 smart00338 BRLZ basic region l 30.6 1.7E+02 0.0038 20.7 5.3 31 47-77 32-62 (65)
410 PRK11199 tyrA bifunctional cho 30.6 3.2E+02 0.0069 25.9 8.5 46 113-166 5-50 (374)
411 PHA01750 hypothetical protein 30.5 1.3E+02 0.0028 23.3 4.8 35 114-148 38-72 (75)
412 KOG0964 Structural maintenance 30.4 8.4E+02 0.018 27.6 17.3 48 129-176 752-805 (1200)
413 PRK09841 cryptic autophosphory 30.2 6.4E+02 0.014 26.2 12.9 51 150-211 333-383 (726)
414 PF04977 DivIC: Septum formati 30.1 1.9E+02 0.0041 20.5 5.5 14 162-175 37-50 (80)
415 PF10481 CENP-F_N: Cenp-F N-te 29.7 5.2E+02 0.011 24.9 13.1 101 99-219 16-130 (307)
416 PF12252 SidE: Dot/Icm substra 29.7 7.5E+02 0.016 28.4 11.8 142 70-216 1132-1309(1439)
417 PF02646 RmuC: RmuC family; I 29.6 1.9E+02 0.0042 26.8 6.8 28 194-221 44-71 (304)
418 PRK14475 F0F1 ATP synthase sub 29.6 3.4E+02 0.0074 22.8 10.9 83 101-188 41-124 (167)
419 TIGR01808 CM_M_hiGC-arch monof 29.3 1.6E+02 0.0035 21.9 5.1 34 114-147 3-36 (74)
420 KOG0979 Structural maintenance 29.3 7.8E+02 0.017 27.7 11.9 129 53-184 572-702 (1072)
421 PF14988 DUF4515: Domain of un 28.9 4.2E+02 0.0091 23.6 16.8 73 36-112 20-103 (206)
422 KOG0289 mRNA splicing factor [ 28.8 5.6E+02 0.012 26.3 10.0 133 31-194 61-206 (506)
423 PF15450 DUF4631: Domain of un 28.7 6.8E+02 0.015 26.0 12.5 110 65-188 368-480 (531)
424 COG3879 Uncharacterized protei 28.6 3.1E+02 0.0067 25.6 7.8 31 122-152 54-84 (247)
425 cd07672 F-BAR_PSTPIP2 The F-BA 28.3 4.5E+02 0.0097 23.8 12.8 101 115-217 58-166 (240)
426 PF05761 5_nucleotid: 5' nucle 28.0 2.2E+02 0.0048 28.3 7.2 23 157-179 363-385 (448)
427 PRK06975 bifunctional uroporph 28.0 2.7E+02 0.006 28.7 8.1 45 66-110 343-387 (656)
428 COG5613 Uncharacterized conser 28.0 6.1E+02 0.013 25.3 9.9 104 131-239 69-187 (400)
429 PF09304 Cortex-I_coil: Cortex 28.0 3.5E+02 0.0076 22.4 8.4 31 38-68 13-43 (107)
430 TIGR03321 alt_F1F0_F0_B altern 27.9 4.4E+02 0.0095 23.5 11.3 83 101-188 36-119 (246)
431 KOG2991 Splicing regulator [RN 27.8 2.8E+02 0.0061 26.7 7.5 61 102-175 237-297 (330)
432 KOG2077 JNK/SAPK-associated pr 27.8 2.8E+02 0.0061 29.5 8.0 78 48-128 301-381 (832)
433 PF05384 DegS: Sensor protein 27.8 4E+02 0.0087 23.1 12.7 59 93-161 76-134 (159)
434 PF08232 Striatin: Striatin fa 27.4 2.8E+02 0.0061 23.0 6.8 54 87-143 18-71 (134)
435 KOG4687 Uncharacterized coiled 27.4 5.9E+02 0.013 24.8 11.5 102 49-160 38-139 (389)
436 KOG1510 RNA polymerase II holo 27.3 2.2E+02 0.0047 24.6 6.1 74 70-157 64-137 (139)
437 PRK10476 multidrug resistance 27.3 4.9E+02 0.011 23.9 15.6 20 160-179 187-206 (346)
438 KOG1925 Rac1 GTPase effector F 27.3 49 0.0011 34.4 2.6 12 26-37 254-265 (817)
439 PF11068 YlqD: YlqD protein; 27.2 2.2E+02 0.0047 23.9 6.0 53 133-187 21-73 (131)
440 PRK09973 putative outer membra 27.2 3.2E+02 0.0069 21.7 6.9 35 116-150 29-63 (85)
441 PF13166 AAA_13: AAA domain 27.1 6.6E+02 0.014 25.3 21.4 96 83-179 329-426 (712)
442 PF15188 CCDC-167: Coiled-coil 27.1 1.8E+02 0.0038 23.0 5.2 57 161-217 3-62 (85)
443 KOG4010 Coiled-coil protein TP 27.0 1.8E+02 0.0038 26.6 5.8 83 115-200 48-168 (208)
444 TIGR01805 CM_mono_grmpos monof 26.8 2.1E+02 0.0045 21.3 5.4 34 114-147 2-35 (81)
445 PRK09343 prefoldin subunit bet 26.7 3.5E+02 0.0075 21.9 9.3 90 118-217 14-111 (121)
446 KOG0994 Extracellular matrix g 26.7 1.1E+03 0.023 27.6 15.5 67 110-179 1681-1747(1758)
447 TIGR01807 CM_P2 chorismate mut 26.6 2E+02 0.0043 21.1 5.2 34 114-147 2-35 (76)
448 COG5293 Predicted ATPase [Gene 26.6 7.5E+02 0.016 25.8 12.3 106 99-204 340-454 (591)
449 PHA03332 membrane glycoprotein 26.6 1E+03 0.022 27.3 12.1 61 67-133 903-963 (1328)
450 TIGR01730 RND_mfp RND family e 26.5 4.4E+02 0.0095 23.1 8.5 10 163-172 116-125 (322)
451 KOG0162 Myosin class I heavy c 26.4 61 0.0013 35.1 3.2 16 21-36 1033-1048(1106)
452 KOG0963 Transcription factor/C 26.4 8E+02 0.017 26.0 21.0 96 118-216 242-342 (629)
453 PRK14154 heat shock protein Gr 26.2 3.7E+02 0.0081 24.3 7.7 52 29-80 47-98 (208)
454 PF10224 DUF2205: Predicted co 26.1 3.2E+02 0.0069 21.3 6.5 37 123-159 21-57 (80)
455 KOG4302 Microtubule-associated 26.1 7.7E+02 0.017 26.2 10.9 85 67-155 101-197 (660)
456 PF05483 SCP-1: Synaptonemal c 26.1 8.7E+02 0.019 26.3 20.9 134 45-181 405-552 (786)
457 KOG0239 Kinesin (KAR3 subfamil 25.9 8E+02 0.017 25.9 16.0 56 160-215 252-310 (670)
458 PRK07352 F0F1 ATP synthase sub 25.7 4E+02 0.0087 22.4 11.3 87 99-190 48-135 (174)
459 PRK00888 ftsB cell division pr 25.7 1.8E+02 0.0039 23.2 5.1 31 39-69 32-62 (105)
460 PRK05689 fliJ flagellar biosyn 25.6 3.6E+02 0.0078 21.7 10.7 42 157-198 72-113 (147)
461 PF01920 Prefoldin_2: Prefoldi 25.5 2.9E+02 0.0063 20.6 10.1 36 114-149 65-100 (106)
462 PF05615 THOC7: Tho complex su 25.4 3.7E+02 0.0079 21.8 9.7 92 91-185 13-110 (139)
463 COG3923 PriC Primosomal replic 25.0 3.4E+02 0.0073 24.3 7.0 44 45-88 113-166 (175)
464 PRK11546 zraP zinc resistance 24.8 2.3E+02 0.0049 24.3 5.8 50 129-178 51-104 (143)
465 COG4477 EzrA Negative regulato 24.8 8.2E+02 0.018 25.6 15.7 65 152-216 343-407 (570)
466 PF13094 CENP-Q: CENP-Q, a CEN 24.7 4E+02 0.0086 22.1 7.2 47 153-213 38-84 (160)
467 PLN03188 kinesin-12 family pro 24.7 1.1E+03 0.024 27.2 13.3 93 81-180 909-1003(1320)
468 PF02731 SKIP_SNW: SKIP/SNW do 24.7 4.3E+02 0.0094 23.1 7.6 11 39-49 87-97 (158)
469 COG1344 FlgL Flagellin and rel 24.6 5.9E+02 0.013 23.9 9.5 81 100-180 46-129 (360)
470 PRK09343 prefoldin subunit bet 24.6 3.8E+02 0.0083 21.7 12.0 75 98-175 25-111 (121)
471 PRK13824 replication initiatio 24.6 4.8E+02 0.01 25.6 8.7 78 95-173 147-233 (404)
472 TIGR00293 prefoldin, archaeal 24.3 3.6E+02 0.0077 21.2 10.3 21 192-212 101-121 (126)
473 PRK09752 adhesin; Provisional 24.2 70 0.0015 35.9 3.2 6 228-233 1060-1065(1250)
474 KOG2815 Mitochondrial/cholorop 24.1 1.9E+02 0.0041 27.1 5.6 93 95-188 144-237 (256)
475 PRK06285 chorismate mutase; Pr 24.1 3.4E+02 0.0074 20.9 8.7 35 113-147 9-43 (96)
476 PF06103 DUF948: Bacterial pro 24.1 3.1E+02 0.0067 20.5 7.2 50 115-164 37-86 (90)
477 PRK11556 multidrug efflux syst 23.9 6.2E+02 0.013 24.3 9.3 85 115-227 122-206 (415)
478 smart00503 SynN Syntaxin N-ter 23.7 3.2E+02 0.007 20.6 11.1 20 158-177 91-110 (117)
479 PF07111 HCR: Alpha helical co 23.6 9.5E+02 0.021 26.0 20.8 96 115-211 159-271 (739)
480 KOG4593 Mitotic checkpoint pro 23.6 9.4E+02 0.02 25.9 17.1 141 39-180 382-527 (716)
481 PF13870 DUF4201: Domain of un 23.6 4.4E+02 0.0096 22.1 13.7 13 50-62 44-56 (177)
482 PRK07857 hypothetical protein; 23.5 1.8E+02 0.0039 23.8 4.8 38 111-148 28-65 (106)
483 PF06419 COG6: Conserved oligo 23.4 5.8E+02 0.013 26.2 9.4 40 110-149 37-76 (618)
484 PF12999 PRKCSH-like: Glucosid 23.4 4.2E+02 0.009 23.5 7.3 12 132-143 142-153 (176)
485 PF06637 PV-1: PV-1 protein (P 23.2 7.9E+02 0.017 24.8 12.0 55 35-98 275-333 (442)
486 PF07028 DUF1319: Protein of u 23.1 4.7E+02 0.01 22.2 10.8 79 131-209 29-121 (126)
487 KOG4253 Tryptophan-rich basic 22.9 2.1E+02 0.0045 25.5 5.3 48 153-209 41-88 (175)
488 COG4238 Murein lipoprotein [Ce 22.8 3.7E+02 0.0079 21.2 6.1 42 117-158 24-65 (78)
489 TIGR00998 8a0101 efflux pump m 22.7 5.6E+02 0.012 23.0 15.7 85 37-125 76-160 (334)
490 PF03245 Phage_lysis: Bacterio 22.6 3.7E+02 0.0081 22.0 6.5 32 119-150 15-46 (125)
491 PF00769 ERM: Ezrin/radixin/mo 22.4 5.9E+02 0.013 23.1 13.1 44 45-88 30-73 (246)
492 PF13815 Dzip-like_N: Iguana/D 22.4 3.1E+02 0.0067 21.9 5.9 27 129-155 70-96 (118)
493 PRK11448 hsdR type I restricti 22.4 5.2E+02 0.011 28.8 9.3 18 134-151 186-203 (1123)
494 PLN02320 seryl-tRNA synthetase 22.4 8.5E+02 0.018 24.9 10.4 29 120-148 95-123 (502)
495 KOG4360 Uncharacterized coiled 22.3 8.3E+02 0.018 25.6 10.1 27 130-156 273-299 (596)
496 COG1842 PspA Phage shock prote 22.2 5.9E+02 0.013 23.1 12.3 99 116-216 36-138 (225)
497 PRK13922 rod shape-determining 22.2 2.7E+02 0.0059 24.9 6.1 20 156-175 69-88 (276)
498 PF13815 Dzip-like_N: Iguana/D 22.2 2E+02 0.0044 23.0 4.8 38 111-148 80-117 (118)
499 PF00170 bZIP_1: bZIP transcri 22.1 2.9E+02 0.0064 19.5 5.7 39 41-79 26-64 (64)
500 PRK10404 hypothetical protein; 22.1 4.1E+02 0.0089 21.2 9.0 87 134-236 7-99 (101)
No 1
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.61 E-value=0.022 Score=58.48 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhh
Q 026318 39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIP 86 (240)
Q Consensus 39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~ 86 (240)
++.++.....++..+-.+...+-.....+.+++...+.++..+..-+.
T Consensus 292 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~ 339 (1164)
T TIGR02169 292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIE 339 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444443333
No 2
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.60 E-value=0.027 Score=57.39 Aligned_cols=6 Identities=50% Similarity=0.866 Sum_probs=2.3
Q ss_pred hHHHHH
Q 026318 39 LEEEIE 44 (240)
Q Consensus 39 LEe~La 44 (240)
++..+.
T Consensus 703 ~~~~l~ 708 (1179)
T TIGR02168 703 LRKELE 708 (1179)
T ss_pred HHHHHH
Confidence 334433
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.55 E-value=0.028 Score=57.72 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=9.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHh
Q 026318 193 KQAMENNLISMAREIEKLRAELL 215 (240)
Q Consensus 193 ~qaMEknlisMarEvEKLRaEla 215 (240)
...+.+++-.+-.++.+++.++.
T Consensus 471 l~~~~~~l~~l~~~l~~l~~~~~ 493 (1164)
T TIGR02169 471 LYDLKEEYDRVEKELSKLQRELA 493 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 4
>PRK11637 AmiB activator; Provisional
Probab=97.49 E-value=0.064 Score=51.08 Aligned_cols=81 Identities=17% Similarity=0.218 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHH
Q 026318 127 VQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMARE 206 (240)
Q Consensus 127 ~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarE 206 (240)
++.+...+++|..+.+.+..+++......+..-.-+++++..+.|.+.....++-+++.....+.+.+.-++++-+.-.+
T Consensus 172 l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~ 251 (428)
T PRK11637 172 IAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIAR 251 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666666666666666777777766666777777777777777777766666544443
Q ss_pred H
Q 026318 207 I 207 (240)
Q Consensus 207 v 207 (240)
+
T Consensus 252 l 252 (428)
T PRK11637 252 A 252 (428)
T ss_pred H
Confidence 3
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.39 E-value=0.06 Score=54.91 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=9.4
Q ss_pred chHHHHHHHHHHHHHHHHh
Q 026318 38 TLEEEIEIQRREMHRIISE 56 (240)
Q Consensus 38 ~LEe~La~Q~~EiqrLl~d 56 (240)
-++.++..-+.++..+-..
T Consensus 688 ~l~~~l~~~~~~~~~~~~~ 706 (1179)
T TIGR02168 688 ELEEKIAELEKALAELRKE 706 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555555555444444433
No 6
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.28 E-value=0.074 Score=47.86 Aligned_cols=116 Identities=21% Similarity=0.302 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHh---------------hHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhh
Q 026318 39 LEEEIEIQRREMHRIISENRHAIDD---------------NTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRG 103 (240)
Q Consensus 39 LEe~La~Q~~EiqrLl~dNqRLAat---------------hvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~ 103 (240)
|=+||+.--.=++.|=.+|++|-.. +..+..+|..+++.|..+..-.+.+..+.+.--.++-+=-
T Consensus 9 LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r 88 (312)
T PF00038_consen 9 LNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLR 88 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHH
Confidence 4466666666666666666666543 3445667777777777777777777888888888888888
Q ss_pred hhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026318 104 LKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE 154 (240)
Q Consensus 104 ~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d 154 (240)
.|+|.+......+..|+..++.++......|-+|-.++++|..||.-....
T Consensus 89 ~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~ 139 (312)
T PF00038_consen 89 RKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQN 139 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999877643
No 7
>PRK09039 hypothetical protein; Validated
Probab=97.16 E-value=0.04 Score=51.87 Aligned_cols=146 Identities=20% Similarity=0.309 Sum_probs=87.8
Q ss_pred HHHHHHHhhHHHHHHHhhhhhhhhh---hhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 66 HLQRELTASKDEIHRLGQIIPKLRA---DKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIK 142 (240)
Q Consensus 66 aLrqeL~aaq~El~~l~~~i~~i~a---e~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq 142 (240)
-|.+++..-++||..++..|.++-. =.-.....+=+++..+.+++++.+..|++|.-... .+.....++.+++.
T Consensus 43 fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~---~~~~~~~~~~~~~~ 119 (343)
T PRK09039 43 FLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA---ELAGAGAAAEGRAG 119 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhhcchHHHHHH
Confidence 3445555555555555444443221 11111222333444444444444444444443322 12222234555555
Q ss_pred HHHHHHHHHH----HhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHH-H---HHHHHHHHHHH
Q 026318 143 GLTKDVNRLE----AENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLIS-M---AREIEKLRAEL 214 (240)
Q Consensus 143 ~ltqeL~r~~----~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlis-M---arEvEKLRaEl 214 (240)
.+..+|...+ ....+|-.|+.+|+.||..+..+-++++.-+....+.-++...++..|-. + +.|++++|.++
T Consensus 120 ~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 120 ELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5555555444 45667889999999999999999999999888889999999999998844 4 45788888887
No 8
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.13 E-value=0.029 Score=52.05 Aligned_cols=34 Identities=24% Similarity=0.443 Sum_probs=17.3
Q ss_pred hhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhh
Q 026318 60 AIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE 93 (240)
Q Consensus 60 LAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e 93 (240)
|...+-.|++|.......+..++...+.+...++
T Consensus 154 L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~ 187 (325)
T PF08317_consen 154 LEENLELLQEDYAKLDKQLEQLDELLPKLRERKA 187 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555544433
No 9
>PRK02224 chromosome segregation protein; Provisional
Probab=96.85 E-value=0.39 Score=49.16 Aligned_cols=79 Identities=23% Similarity=0.292 Sum_probs=32.7
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 65 THLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGL 144 (240)
Q Consensus 65 vaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~l 144 (240)
-.+++++...+.++..+...+..++. ++..+-++...++......+.+..++..+...++++.....++..++..+
T Consensus 209 ~~~~~~l~el~~~i~~~~~~~~~l~~----~l~~l~~~~~el~~~~~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~ 284 (880)
T PRK02224 209 NGLESELAELDEEIERYEEQREQARE----TRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDL 284 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333322 22222233344444444444444444444444444444444444444443
Q ss_pred HHH
Q 026318 145 TKD 147 (240)
Q Consensus 145 tqe 147 (240)
...
T Consensus 285 ~~~ 287 (880)
T PRK02224 285 RER 287 (880)
T ss_pred HHH
Confidence 333
No 10
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.73 E-value=0.5 Score=46.85 Aligned_cols=68 Identities=19% Similarity=0.343 Sum_probs=47.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------hHHHHHHHHHHHHHHHHHHHhhh
Q 026318 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ-----------LIAMRADIDGIRSELVEARRAFE 180 (240)
Q Consensus 113 ~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qq-----------ip~l~aEid~lrqElqr~Raa~E 180 (240)
+..++.||.++..++++....--.|...|.+|..||.+.+.+... |..|.+|++.++.||.-++....
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~ 361 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE 361 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 567777888888877777777777777777777777777665543 56666677777776666655543
No 11
>PRK03918 chromosome segregation protein; Provisional
Probab=96.60 E-value=0.65 Score=47.33 Aligned_cols=76 Identities=22% Similarity=0.368 Sum_probs=41.1
Q ss_pred hhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 026318 101 DRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEAR 176 (240)
Q Consensus 101 ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~R 176 (240)
+...+++.++...+..+.++..+..+.+.|...-+.+...+..+.+++.....+..++..+..+++.+...+....
T Consensus 221 ~~~~~~~~~l~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~~~~l~~~~~~~~ 296 (880)
T PRK03918 221 EELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYI 296 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555555555555555666655555555555555555555544444433
No 12
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.58 E-value=0.22 Score=46.24 Aligned_cols=173 Identities=18% Similarity=0.342 Sum_probs=135.5
Q ss_pred HHHHHHHHHhhhhhhH--------hhHHHHHHHHhhHHHHH-HHhhhhhhhhhhhhHhHHH-HHhhhhhhhhhhhcc---
Q 026318 47 RREMHRIISENRHAID--------DNTHLQRELTASKDEIH-RLGQIIPKLRADKEAHTRE-LFDRGLKLEVELRAS--- 113 (240)
Q Consensus 47 ~~EiqrLl~dNqRLAa--------thvaLrqeL~aaq~El~-~l~~~i~~i~ae~e~q~Re-l~ek~~KmEAelRa~--- 113 (240)
|.|+.+=+.+-+++.. +.-.|=+|...|-.|.+ -|...+..|++=.-++.+. -|+-..++.-.|+.+
T Consensus 77 c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~ 156 (325)
T PF08317_consen 77 CRELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEE 156 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566665555555443 33345566644444444 4557777777766666654 477777777777654
Q ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHhhhhhhhcchHHH
Q 026318 114 --EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLI-AMRADIDGIRSELVEARRAFEFEKKANEEQI 190 (240)
Q Consensus 114 --e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip-~l~aEid~lrqElqr~Raa~EyEKK~~~e~~ 190 (240)
+.|+.|...+......|......|...-+.|..++..+++-...+- .=+.++..+++||......++.-|+.-.+.-
T Consensus 157 ~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~ 236 (325)
T PF08317_consen 157 NLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQ 236 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999888766544 3367899999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhcc
Q 026318 191 EQKQAMENNLISMAREIEKLRAELLNTER 219 (240)
Q Consensus 191 Eq~qaMEknlisMarEvEKLRaElanaek 219 (240)
.+.+..+..+-.+..+..++.++|+++++
T Consensus 237 ~el~~l~~~i~~~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 237 EELEELEEKIEELEEQKQELLAEIAEAEK 265 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999874
No 13
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.44 E-value=0.84 Score=49.09 Aligned_cols=48 Identities=29% Similarity=0.382 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 026318 167 GIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAEL 214 (240)
Q Consensus 167 ~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaEl 214 (240)
.++.++..+-..+..-+....+.-.+....+.++..+..++++++..+
T Consensus 867 ~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 914 (1163)
T COG1196 867 ELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERL 914 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334344444444444444445555555555555555554444
No 14
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.41 E-value=1.3 Score=44.96 Aligned_cols=164 Identities=23% Similarity=0.404 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHH
Q 026318 39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRA 118 (240)
Q Consensus 39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~ 118 (240)
|+.+|..-..|-..|+..|..|-..-..|+.++...+.+|.....-...++.+.+ ++.....++..+ .+.++.
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~k----el~~~~e~l~~E---~~~L~~ 213 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQK----ELTESSEELKEE---RESLKE 213 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---HHHHHH
Confidence 4556665556666677777666666666666666666666555444444333221 222222222222 234445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH----HHHH--------HHhhhhhhhcc
Q 026318 119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSE----LVEA--------RRAFEFEKKAN 186 (240)
Q Consensus 119 El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqE----lqr~--------Raa~EyEKK~~ 186 (240)
+...++..|.+|...-+.|+.+.....+.+.+.+ .+.++++.+.-+ ++.. +.+..++ .-+
T Consensus 214 q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk-------~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~-~e~ 285 (546)
T PF07888_consen 214 QLAEARQRIRELEEDIKTLTQKEKEQEKELDKLK-------ELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQ-QEN 285 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH-HHH
Confidence 5555555555555555545444433322222222 222222222211 1111 0111111 223
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 026318 187 EEQIEQKQAMENNLISMAREIEKLRAELLNT 217 (240)
Q Consensus 187 ~e~~Eq~qaMEknlisMarEvEKLRaElana 217 (240)
-...+|++.++.-+-+-=++++.|+.||..+
T Consensus 286 e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~ 316 (546)
T PF07888_consen 286 EALKEQLRSAQEQLQASQQEAELLRKELSDA 316 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888999888888888999999998654
No 15
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.40 E-value=0.57 Score=50.91 Aligned_cols=172 Identities=13% Similarity=0.215 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHhhhhhh---HhhHHHH-HHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHH
Q 026318 44 EIQRREMHRIISENRHAI---DDNTHLQ-RELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAE 119 (240)
Q Consensus 44 a~Q~~EiqrLl~dNqRLA---athvaLr-qeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~E 119 (240)
...-.++...+.+-+.|- ++...+. .++...+.++..+...+..++.+ +.++--...++..++.+.+.+...
T Consensus 715 ~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~----le~~~~~l~~~~~~~~~~esL~~~ 790 (1311)
T TIGR00606 715 ESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKND----IEEQETLLGTIMPEEESAKVCLTD 790 (1311)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333334555554444442 4444443 56666777776666655555544 444444555666666666555444
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHH---HHhhh
Q 026318 120 V---VQLRAEVQKLNSSRQELTTQIK---------GLTKDVNRLEAE----NKQLIAMRADIDGIRSELVEA---RRAFE 180 (240)
Q Consensus 120 l---~Q~r~e~q~L~a~RQELt~qvq---------~ltqeL~r~~~d----~qqip~l~aEid~lrqElqr~---Raa~E 180 (240)
+ ..+..|+..|...-.+|..+++ .+..++.....+ ...++.+..+.+.+..++..+ -..+.
T Consensus 791 v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~ 870 (1311)
T TIGR00606 791 VTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELK 870 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 3334444444333333333222 222333332222 223455666777777777777 44444
Q ss_pred hhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcc
Q 026318 181 FEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTER 219 (240)
Q Consensus 181 yEKK~~~e~~Eq~qaMEknlisMarEvEKLRaElanaek 219 (240)
-++-...+.+.+.+..|..+..+..+++++++++...+.
T Consensus 871 ~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~ 909 (1311)
T TIGR00606 871 SEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKE 909 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555567778888899999999999999998877654
No 16
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=96.39 E-value=0.27 Score=44.06 Aligned_cols=98 Identities=19% Similarity=0.360 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HH--hhhhhHHHHHHHHHHHHHHHH
Q 026318 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRL------------------EA--ENKQLIAMRADIDGIRSELVE 174 (240)
Q Consensus 115 ~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~------------------~~--d~qqip~l~aEid~lrqElqr 174 (240)
.-..||++...|+.-|.-.-..|..++..|..++... +. ...-++.|+.++|.|+.||..
T Consensus 70 ~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~ 149 (202)
T PF06818_consen 70 VCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQR 149 (202)
T ss_pred HhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHH
Confidence 4556666666666555555555555555555555554 11 123467788888888888885
Q ss_pred HH-------HhhhhhhhcchHHHH----HHHHHHHhHHHHHHHHHHHHH
Q 026318 175 AR-------RAFEFEKKANEEQIE----QKQAMENNLISMAREIEKLRA 212 (240)
Q Consensus 175 ~R-------aa~EyEKK~~~e~~E----q~qaMEknlisMarEvEKLRa 212 (240)
.| ..||.|+..-.+-=| --+-+..|||.|-+=-..|-.
T Consensus 150 er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~ 198 (202)
T PF06818_consen 150 ERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALER 198 (202)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 589998887554333 235577899999765444433
No 17
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.37 E-value=0.36 Score=50.55 Aligned_cols=156 Identities=21% Similarity=0.244 Sum_probs=100.6
Q ss_pred HhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhh---hhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHH
Q 026318 55 SENRHAIDDNTHLQRELTASKDEIHRLGQIIPK---LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLN 131 (240)
Q Consensus 55 ~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~---i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~ 131 (240)
+.+.++......|++||..++.++.....-|.. -..++|..+|+-- ..++ ..+++++.+...|.+++.
T Consensus 3 ~ql~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee--~a~l-------~~~k~qlr~~q~e~q~~~ 73 (775)
T PF10174_consen 3 AQLERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEE--AAEL-------SRLKEQLRVTQEENQKAQ 73 (775)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHH--HHHH-------HhHHHHHHHHHhhHHHHH
Confidence 445667777788899999999888887766644 3445566555521 2222 245666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------hh----------hhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHH
Q 026318 132 SSRQELTTQIKGLTKDVNRLEA-------EN----------KQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQ 194 (240)
Q Consensus 132 a~RQELt~qvq~ltqeL~r~~~-------d~----------qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~q 194 (240)
..-+.|-.++ ....|+.|.+. +. .++--|.+|.|.+..|+..+|.++| +.-.+..
T Consensus 74 ~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~lr~~lE-------~~q~~~e 145 (775)
T PF10174_consen 74 EEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELERLRKTLE-------ELQLRIE 145 (775)
T ss_pred HHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 6666666666 55555554444 33 3455566788888888888886554 3444566
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhhcccccccccc
Q 026318 195 AMENNLISMAREIEKLRAELLNTERRACGLGKI 227 (240)
Q Consensus 195 aMEknlisMarEvEKLRaElanaekRa~~~~~~ 227 (240)
+..+-+..---+|+||...|.+.--.+++....
T Consensus 146 ~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~ 178 (775)
T PF10174_consen 146 TQQQTLDKADEEIEKLQEMLQSKGLSAEAEEED 178 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcccchhhh
Confidence 677788889999999999996554444444433
No 18
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.24 E-value=0.76 Score=41.38 Aligned_cols=127 Identities=20% Similarity=0.296 Sum_probs=68.4
Q ss_pred HHHhhhhhhHhhHH---HHHHHHhhHHHHHHHhhh----hhhhhhhhhHh---HHHHHhhh----hhhhhhhhcchhhHH
Q 026318 53 IISENRHAIDDNTH---LQRELTASKDEIHRLGQI----IPKLRADKEAH---TRELFDRG----LKLEVELRASEPVRA 118 (240)
Q Consensus 53 Ll~dNqRLAathva---LrqeL~aaq~El~~l~~~----i~~i~ae~e~q---~Rel~ek~----~KmEAelRa~e~lk~ 118 (240)
|-.=|-|||.-.-- |-++=.....+|..+... .+.+..--+.+ +|..++.+ .+++.+ .+.++.
T Consensus 6 L~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e---~~~l~~ 82 (312)
T PF00038_consen 6 LQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELE---IDNLKE 82 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhh---hhhHHH
Confidence 33448888865443 334444444555544433 11222222222 22333322 233332 356777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 026318 119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKA 185 (240)
Q Consensus 119 El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~ 185 (240)
|+..++.......+.|+.+-.++..+.+++..... ..-.|..+|.+|+.|+...+..++-|-+.
T Consensus 83 e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~---~r~~le~~i~~L~eEl~fl~~~heeEi~~ 146 (312)
T PF00038_consen 83 ELEDLRRKYEEELAERKDLEEELESLRKDLDEETL---ARVDLENQIQSLKEELEFLKQNHEEEIEE 146 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh---hHhHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 77777777777777888888888888777764432 23445566666666666666666655543
No 19
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=96.06 E-value=0.081 Score=43.61 Aligned_cols=74 Identities=20% Similarity=0.363 Sum_probs=64.9
Q ss_pred hhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318 104 LKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (240)
Q Consensus 104 ~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (240)
-+|-+.||.. -.|+.+++.++..|.+.|..|+.+|-.++.+....++..++++.|+.+++.|++.++-+--.|.
T Consensus 19 e~L~s~lr~~---E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellG 92 (120)
T PF12325_consen 19 ERLQSQLRRL---EGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLG 92 (120)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556666644 3689999999999999999999999999999999999999999999999999999988776664
No 20
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=96.02 E-value=0.44 Score=40.65 Aligned_cols=76 Identities=21% Similarity=0.359 Sum_probs=43.8
Q ss_pred HHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhh----HhHHHHHhhhhhhhhhhhcc-hhhHHHHHHHH
Q 026318 50 MHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE----AHTRELFDRGLKLEVELRAS-EPVRAEVVQLR 124 (240)
Q Consensus 50 iqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e----~q~Rel~ek~~KmEAelRa~-e~lk~El~Q~r 124 (240)
+..++.+|-..+.+.++-|.++.... ..+.+.++.+++|-. .++-.+-....+|..|+... ..++.|+.+++
T Consensus 28 l~~~l~~~~~~~~~~~vtk~d~e~~~---~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~ 104 (177)
T PF07798_consen 28 LREVLNDSLEKVAQDLVTKSDLENQE---YLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLR 104 (177)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888877778888888877644 344456666666543 33333444444455554444 23555555555
Q ss_pred HHHH
Q 026318 125 AEVQ 128 (240)
Q Consensus 125 ~e~q 128 (240)
+|++
T Consensus 105 a~~k 108 (177)
T PF07798_consen 105 AEVK 108 (177)
T ss_pred HHHH
Confidence 5554
No 21
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.02 E-value=1.3 Score=50.74 Aligned_cols=142 Identities=21% Similarity=0.260 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHH
Q 026318 41 EEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEV 120 (240)
Q Consensus 41 e~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El 120 (240)
+++..-...+...-.-|-.|=-+...|+||+..+.-|+++..+++..+..-.-..---|.+.-.+.|.=.--.+....|+
T Consensus 1386 ~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~ 1465 (1930)
T KOG0161|consen 1386 QRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQREL 1465 (1930)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555566666677888888888888888888766655433222222222222222222222334455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 026318 121 VQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFE 182 (240)
Q Consensus 121 ~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyE 182 (240)
.+...++++|...=-++..++.++..+-..++.+...+-.-..|...-.+|++..+..+|.|
T Consensus 1466 r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e 1527 (1930)
T KOG0161|consen 1466 RQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQE 1527 (1930)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666665
No 22
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.02 E-value=1.8 Score=46.55 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhH
Q 026318 39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASK 75 (240)
Q Consensus 39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq 75 (240)
|++++..-...+..+..+...+-..+-.+...+....
T Consensus 672 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1163)
T COG1196 672 LEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELR 708 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555544444444444444333333
No 23
>PRK02224 chromosome segregation protein; Provisional
Probab=95.99 E-value=1.5 Score=45.07 Aligned_cols=13 Identities=15% Similarity=0.404 Sum_probs=4.7
Q ss_pred HHHHHHHHhhHHH
Q 026318 65 THLQRELTASKDE 77 (240)
Q Consensus 65 vaLrqeL~aaq~E 77 (240)
..|+.++...+.+
T Consensus 216 ~el~~~i~~~~~~ 228 (880)
T PRK02224 216 AELDEEIERYEEQ 228 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 24
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.86 E-value=1.7 Score=45.80 Aligned_cols=91 Identities=26% Similarity=0.311 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhh--------------------hhhhhhhhhHhHHHHHh
Q 026318 42 EIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQI--------------------IPKLRADKEAHTRELFD 101 (240)
Q Consensus 42 ~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~--------------------i~~i~ae~e~q~Rel~e 101 (240)
++..-..+.+.+-.+|+++-.+--+|+-+| -++.|+.+|.+- +..+++|+|...+++..
T Consensus 54 ~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~ 132 (775)
T PF10174_consen 54 ELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELER 132 (775)
T ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456668889999999999999999999999 999999999875 34456777777777776
Q ss_pred hhhhhhhhhhcchhhHHHHHHHHHHHHHHHHH
Q 026318 102 RGLKLEVELRASEPVRAEVVQLRAEVQKLNSS 133 (240)
Q Consensus 102 k~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~ 133 (240)
-..++|.-=--++.++.++.....++.+|...
T Consensus 133 lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~ 164 (775)
T PF10174_consen 133 LRKTLEELQLRIETQQQTLDKADEEIEKLQEM 164 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655455567777777777777777663
No 25
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.86 E-value=0.85 Score=49.59 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=10.1
Q ss_pred HHhHHHHHHHHHHHHHHHhhh
Q 026318 197 ENNLISMAREIEKLRAELLNT 217 (240)
Q Consensus 197 EknlisMarEvEKLRaElana 217 (240)
+.++-.+-.+++.|..++++.
T Consensus 1027 ~~~l~el~~eI~~l~~~~~~~ 1047 (1311)
T TIGR00606 1027 ENELKEVEEELKQHLKEMGQM 1047 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 444444455555555554443
No 26
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.74 E-value=0.74 Score=43.25 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=12.9
Q ss_pred hhHhhHHHHHHHHhhHHHHHHHhhhhhhhh
Q 026318 60 AIDDNTHLQRELTASKDEIHRLGQIIPKLR 89 (240)
Q Consensus 60 LAathvaLrqeL~aaq~El~~l~~~i~~i~ 89 (240)
|...+..|+.|....-..+..++...+.++
T Consensus 149 L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~ 178 (312)
T smart00787 149 LDENLEGLKEDYKLLMKELELLNSIKPKLR 178 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444333
No 27
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.66 E-value=2.5 Score=42.94 Aligned_cols=44 Identities=23% Similarity=0.285 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhh
Q 026318 41 EEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQI 84 (240)
Q Consensus 41 e~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~ 84 (240)
.+...-..+...|=.++.-|-..--.|+.+|...+.+...|...
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~ 193 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQ 193 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444555555555555555555555555555444433
No 28
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.65 E-value=0.85 Score=43.73 Aligned_cols=58 Identities=16% Similarity=0.304 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 026318 124 RAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEF 181 (240)
Q Consensus 124 r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey 181 (240)
......+.+....|..++..+.+++++.+.+.+++|....|+..|..|+.-.+..|+.
T Consensus 316 ~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~ 373 (498)
T TIGR03007 316 QIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQ 373 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555556667777788888888888888888888888888888877776653
No 29
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.60 E-value=1 Score=45.98 Aligned_cols=121 Identities=18% Similarity=0.319 Sum_probs=100.3
Q ss_pred hhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 026318 92 KEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSE 171 (240)
Q Consensus 92 ~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqE 171 (240)
-+..-|+|++++.-.|++=-..+.+|..-.-++.|+.|+.+.=..+.++-|.+.+.|++.+++ +-..-.|++.|+++
T Consensus 240 l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~E---ie~kEeE~e~lq~~ 316 (581)
T KOG0995|consen 240 LKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSE---IEEKEEEIEKLQKE 316 (581)
T ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 345678899999877777777789999999999999999999999999999999999999988 55667899999999
Q ss_pred HHHHHHhhhhhhhcchHHHHHH----HHHHHhHHHHHHHHHHHHHHHhh
Q 026318 172 LVEARRAFEFEKKANEEQIEQK----QAMENNLISMAREIEKLRAELLN 216 (240)
Q Consensus 172 lqr~Raa~EyEKK~~~e~~Eq~----qaMEknlisMarEvEKLRaElan 216 (240)
...++.-||.- +-+++.+|+| ...++++--|-.+.++|+-++=+
T Consensus 317 ~d~Lk~~Ie~Q-~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~ 364 (581)
T KOG0995|consen 317 NDELKKQIELQ-GISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWE 364 (581)
T ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999886 6677777765 45677777777777777776644
No 30
>PRK03918 chromosome segregation protein; Provisional
Probab=95.54 E-value=3.3 Score=42.29 Aligned_cols=11 Identities=36% Similarity=0.585 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 026318 203 MAREIEKLRAE 213 (240)
Q Consensus 203 MarEvEKLRaE 213 (240)
...++.+|+++
T Consensus 403 l~~~i~~l~~~ 413 (880)
T PRK03918 403 IEEEISKITAR 413 (880)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 31
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.48 E-value=1.8 Score=41.67 Aligned_cols=27 Identities=11% Similarity=0.145 Sum_probs=19.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 026318 155 NKQLIAMRADIDGIRSELVEARRAFEF 181 (240)
Q Consensus 155 ~qqip~l~aEid~lrqElqr~Raa~Ey 181 (240)
...+..+..+++.++.++..+++.+.-
T Consensus 235 ~~~~~~~~~~i~~l~~~i~~~~~~~~~ 261 (457)
T TIGR01000 235 STILATIQQQIDQLQKSIASYQVQKAG 261 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346677778888888888877776653
No 32
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.44 E-value=2.4 Score=42.16 Aligned_cols=116 Identities=16% Similarity=0.256 Sum_probs=75.8
Q ss_pred HhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHH---------
Q 026318 62 DDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNS--------- 132 (240)
Q Consensus 62 athvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a--------- 132 (240)
.-|..--.+|..+++||..+..-..++-.+++.-+-..-+=...++.-.+.++.|..||..+...+.....
T Consensus 123 ~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~ 202 (522)
T PF05701_consen 123 EQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEER 202 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566788899999999988888888887777777777777777777777777776655554443322
Q ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 026318 133 ----------------SRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR 177 (240)
Q Consensus 133 ----------------~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra 177 (240)
.-.+-..++..|..++...+.--.++..-..+|+.|+.|+--...
T Consensus 203 ~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~ 263 (522)
T PF05701_consen 203 IEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKE 263 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122223344555555544444445566667778888887776665
No 33
>PRK11637 AmiB activator; Provisional
Probab=95.10 E-value=3.3 Score=39.61 Aligned_cols=85 Identities=15% Similarity=0.245 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHH----HHHhHHHH
Q 026318 128 QKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQA----MENNLISM 203 (240)
Q Consensus 128 q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qa----MEknlisM 203 (240)
..+...++++..++....++|. ...+.+-.-+++++.+..++..-++.++-+++..-..+.+.+. -+.-+..+
T Consensus 162 ~~i~~~d~~~l~~l~~~~~~L~---~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l 238 (428)
T PRK11637 162 GYLNQARQETIAELKQTREELA---AQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSEL 238 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666665555555554 3344455566667777777777777777766663333333322 22233344
Q ss_pred HHHHHHHHHHHh
Q 026318 204 AREIEKLRAELL 215 (240)
Q Consensus 204 arEvEKLRaEla 215 (240)
.++..+|...|+
T Consensus 239 ~~~~~~L~~~I~ 250 (428)
T PRK11637 239 RANESRLRDSIA 250 (428)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 34
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=95.06 E-value=1.2 Score=37.59 Aligned_cols=113 Identities=17% Similarity=0.267 Sum_probs=50.7
Q ss_pred hhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHH
Q 026318 58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQEL 137 (240)
Q Consensus 58 qRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQEL 137 (240)
.++-.+-..+.+.+...++|+..+...+.+...+-+..-...+.-.--++.--...+.++.+......++..|....+++
T Consensus 77 ~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~ 156 (191)
T PF04156_consen 77 PRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDS 156 (191)
T ss_pred hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555554444443333222222221111111111233333344444444444445555
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 026318 138 TTQIKGLTKDVNRLEAENKQLIAMRADIDGIRS 170 (240)
Q Consensus 138 t~qvq~ltqeL~r~~~d~qqip~l~aEid~lrq 170 (240)
-..++.+..++.+.+.+.+++-...++...+++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 189 (191)
T PF04156_consen 157 REEVQELRSQLERLQENLQQLEEKIQELQELLE 189 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555555555555555555555555544
No 35
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.91 E-value=1.2 Score=46.13 Aligned_cols=94 Identities=30% Similarity=0.346 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcch--------
Q 026318 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANE-------- 187 (240)
Q Consensus 116 lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~-------- 187 (240)
+|.|-.++...+++|...||.=...++.|.+-|. ..-..++.+|.-=.|-.+.|.. |-|+-+.+
T Consensus 465 lr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~-------eE~~~R~~lEkQL~eErk~r~~-ee~~aar~~~~~~~~r 536 (697)
T PF09726_consen 465 LRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLA-------EERRQRASLEKQLQEERKARKE-EEEKAARALAQAQATR 536 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhH-HHHhhhhccccchhcc
Confidence 4444444444444444444444444444444332 2222334444333333333333 22344443
Q ss_pred -HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhccc
Q 026318 188 -EQIEQKQAMENNLISMAREIEKLRAELLNTERR 220 (240)
Q Consensus 188 -e~~Eq~qaMEknlisMarEvEKLRaElanaekR 220 (240)
|--|+.+.=.+ .|=.|+.|||.||-..|.+
T Consensus 537 ~e~~e~~r~r~~---~lE~E~~~lr~elk~kee~ 567 (697)
T PF09726_consen 537 QECAESCRQRRR---QLESELKKLRRELKQKEEQ 567 (697)
T ss_pred chhHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 55554444333 3347888999888766544
No 36
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.81 E-value=1.5 Score=41.85 Aligned_cols=117 Identities=20% Similarity=0.297 Sum_probs=75.0
Q ss_pred HHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhH-hHH----HHHhhhhhhhhhhhcchhhHHHHHHHHH
Q 026318 51 HRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEA-HTR----ELFDRGLKLEVELRASEPVRAEVVQLRA 125 (240)
Q Consensus 51 qrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~-q~R----el~ek~~KmEAelRa~e~lk~El~Q~r~ 125 (240)
...-..|..|..+-..|||.|..+|-|+.-|...+.+.+...+- ..+ +=-+-+..||.==.-.+.+--|++.+--
T Consensus 75 ~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lD 154 (319)
T PF09789_consen 75 SESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLD 154 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445799999999999999999999999999988887754321 111 1111122223222222355556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHH
Q 026318 126 EVQKLNSSRQELTTQIKGLTKDVNRLEA-ENKQLIAMRADIDGIRSE 171 (240)
Q Consensus 126 e~q~L~a~RQELt~qvq~ltqeL~r~~~-d~qqip~l~aEid~lrqE 171 (240)
|.+.|...|...-.+++.|++||.-+-+ |...|. +||+|.-|
T Consensus 155 EkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~riv----DIDaLi~E 197 (319)
T PF09789_consen 155 EKEELVTERDAYKCKAHRLNHELNYILNGDENRIV----DIDALIME 197 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc----cHHHHHHH
Confidence 6677777777777889999999986653 444322 45555444
No 37
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.79 E-value=5.4 Score=40.62 Aligned_cols=57 Identities=25% Similarity=0.329 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHH----HHHHHHHHHH
Q 026318 158 LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMA----REIEKLRAEL 214 (240)
Q Consensus 158 ip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMa----rEvEKLRaEl 214 (240)
+--|++|+..|+.+|.++|...+-|--+..++--+.|++.+-|--|- .||+.+|.-.
T Consensus 171 ~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~ 231 (546)
T KOG0977|consen 171 LKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKA 231 (546)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999998887776 6776666543
No 38
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.78 E-value=3.2 Score=46.53 Aligned_cols=159 Identities=16% Similarity=0.201 Sum_probs=112.4
Q ss_pred HhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhH-------HHHH----hhhhhhhhhhhcc----hhhHHHHHHHHHH
Q 026318 62 DDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHT-------RELF----DRGLKLEVELRAS----EPVRAEVVQLRAE 126 (240)
Q Consensus 62 athvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~-------Rel~----ek~~KmEAelRa~----e~lk~El~Q~r~e 126 (240)
.+|-.|+++...+++-.+.+++.+-.+.-=.+..- -.++ +..-+++..+.-. +..+.++.+++.+
T Consensus 935 ~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q 1014 (1486)
T PRK04863 935 EQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQ 1014 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999988877665532111000 0000 1111222222222 4556667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH---------HHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHH
Q 026318 127 VQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIA---------MRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAME 197 (240)
Q Consensus 127 ~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~---------l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaME 197 (240)
.++....-..+.+.++.+.+.+..+..+.+.++. .++.-|.|.+.|...|+-..+=-|.....-..++.++
T Consensus 1015 ~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~ 1094 (1486)
T PRK04863 1015 LAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLT 1094 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777888888888888777652 4455688999999999988877777778888899999
Q ss_pred HhHHHHHHHHHHHHHHHhhhccc
Q 026318 198 NNLISMAREIEKLRAELLNTERR 220 (240)
Q Consensus 198 knlisMarEvEKLRaElanaekR 220 (240)
+++-..-++.+-+|.++.++..+
T Consensus 1095 kkL~~~~~e~~~~re~I~~aK~~ 1117 (1486)
T PRK04863 1095 KKLRKLERDYHEMREQVVNAKAG 1117 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887654
No 39
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.51 E-value=2.1 Score=42.76 Aligned_cols=161 Identities=17% Similarity=0.232 Sum_probs=95.6
Q ss_pred hhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhh-hHhHHHHHhhhh----hhhhhhhcchhhHHHHHHHHHHHHHHHH
Q 026318 58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADK-EAHTRELFDRGL----KLEVELRASEPVRAEVVQLRAEVQKLNS 132 (240)
Q Consensus 58 qRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~-e~q~Rel~ek~~----KmEAelRa~e~lk~El~Q~r~e~q~L~a 132 (240)
+...=+|+.+-.++...+..|......|+.+.-+. +..+.++-+++- .||.|..|...+......+...+..+..
T Consensus 245 ~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e 324 (569)
T PRK04778 245 EGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKE 324 (569)
T ss_pred cCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45556777888888888888888777777666543 223333333333 3455555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh-------hhhhcchHHHHHHHHHHHhHHHHHH
Q 026318 133 SRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE-------FEKKANEEQIEQKQAMENNLISMAR 205 (240)
Q Consensus 133 ~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E-------yEKK~~~e~~Eq~qaMEknlisMar 205 (240)
.-++|..++..+++...-...|...+-.+..+|+.+...+...-..+. -=++..-+..++...+++....+..
T Consensus 325 ~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e 404 (569)
T PRK04778 325 QNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSE 404 (569)
T ss_pred HHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555333344555556666666666655555444443 3344555566666777777777777
Q ss_pred HHHHHHHHHhhhc
Q 026318 206 EIEKLRAELLNTE 218 (240)
Q Consensus 206 EvEKLRaElanae 218 (240)
.+..||.+-..+.
T Consensus 405 ~l~~Lrk~E~eAr 417 (569)
T PRK04778 405 MLQGLRKDELEAR 417 (569)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777765554
No 40
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.48 E-value=3.8 Score=37.53 Aligned_cols=69 Identities=16% Similarity=0.188 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcc-hHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccccccc
Q 026318 159 IAMRADIDGIRSELVEARRAFEFEKKAN-EEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGLGKI 227 (240)
Q Consensus 159 p~l~aEid~lrqElqr~Raa~EyEKK~~-~e~~Eq~qaMEknlisMarEvEKLRaElanaekRa~~~~~~ 227 (240)
-..+++++.++.++..++..+.-.+... .+..+.....+.++...-.+++.++..+.+..-+|-..|.+
T Consensus 213 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP~dG~V 282 (423)
T TIGR01843 213 GRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQRLIIRSPVDGTV 282 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEECCCCcEE
Confidence 3344444555555555544444332222 22234455666666677777777777777776666555655
No 41
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.37 E-value=2.7 Score=42.02 Aligned_cols=173 Identities=16% Similarity=0.260 Sum_probs=132.0
Q ss_pred hHHHHHHHHHHHHH----HHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhh--------hHhHHHHHhhhhhh
Q 026318 39 LEEEIEIQRREMHR----IISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADK--------EAHTRELFDRGLKL 106 (240)
Q Consensus 39 LEe~La~Q~~Eiqr----Ll~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~--------e~q~Rel~ek~~Km 106 (240)
+...+-.|-.|++. +..+ .+.=+|..+-.++...+..+......+..+.-+. ..+|-.||| .|
T Consensus 220 l~~~~P~ql~eL~~gy~~m~~~--gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd---~l 294 (560)
T PF06160_consen 220 LQKEFPDQLEELKEGYREMEEE--GYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYD---IL 294 (560)
T ss_pred HHHHhHHHHHHHHHHHHHHHHC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH---HH
Confidence 44455556555543 4443 4666688888888888888888888777765443 223334443 47
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 026318 107 EVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKAN 186 (240)
Q Consensus 107 EAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~ 186 (240)
|.|+.|...+...+..+...+..+...=++|..++..+.+-..=...+...+-.+..+|+.+...+......++-.+..|
T Consensus 295 e~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~y 374 (560)
T PF06160_consen 295 EKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPY 374 (560)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCH
Confidence 88999998888888888888888888888888888887777766667888999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 026318 187 EEQIEQKQAMENNLISMAREIEKLRAELLN 216 (240)
Q Consensus 187 ~e~~Eq~qaMEknlisMarEvEKLRaElan 216 (240)
....+..+.+.++|-.+-.+...+...|.+
T Consensus 375 S~i~~~l~~~~~~l~~ie~~q~~~~~~l~~ 404 (560)
T PF06160_consen 375 SEIQEELEEIEEQLEEIEEEQEEINESLQS 404 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888888877777766666666555
No 42
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.35 E-value=1.2 Score=41.59 Aligned_cols=117 Identities=21% Similarity=0.330 Sum_probs=72.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHH
Q 026318 112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIE 191 (240)
Q Consensus 112 a~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~E 191 (240)
.......+..++..++++|.....+|..++..+.++-..+..+...+-.-..+++....++-+-++.+..+. .+..+
T Consensus 37 ~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l---~~~~~ 113 (314)
T PF04111_consen 37 EESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLEL---IEFQE 113 (314)
T ss_dssp -----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 334555666677777777777777777777777777776666655555555556655666667777776654 44556
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhcccc-----c-ccccc-chhhhh
Q 026318 192 QKQAMENNLISMAREIEKLRAELLNTERRA-----C-GLGKI-SFFLGA 233 (240)
Q Consensus 192 q~qaMEknlisMarEvEKLRaElanaekRa-----~-~~~~~-g~~~~~ 233 (240)
..+.++..+..+...+++||. .|.=+-+ - ..|++ |+-+|-
T Consensus 114 e~~sl~~q~~~~~~~L~~L~k--tNv~n~~F~I~hdG~fGTINGlRLGr 160 (314)
T PF04111_consen 114 ERDSLKNQYEYASNQLDRLRK--TNVYNDTFHIWHDGPFGTINGLRLGR 160 (314)
T ss_dssp HHHHHHHHHHHHHHHHHCHHT----TTTTT--EEEETTEEEETTEEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHh--cCchhceeeEeecCCeeeECCeeecc
Confidence 677788888899999999986 3321111 1 34555 888884
No 43
>PF13514 AAA_27: AAA domain
Probab=94.29 E-value=9.2 Score=41.09 Aligned_cols=139 Identities=19% Similarity=0.265 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhH-----hHHHHHhhhhhhhhhhhcch--
Q 026318 42 EIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEA-----HTRELFDRGLKLEVELRASE-- 114 (240)
Q Consensus 42 ~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~-----q~Rel~ek~~KmEAelRa~e-- 114 (240)
.+-.+..|+++=+.+..--..+...|++++..+++++..+...+..++.+... .+..++.....++++|-+..
T Consensus 154 ~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~~l~~~ 233 (1111)
T PF13514_consen 154 QALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELAELGEV 233 (1111)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCc
Confidence 34455666666666677777888889999999999999998888888876554 44457777777777776431
Q ss_pred -----hhHHHHHHH--------------HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 026318 115 -----PVRAEVVQL--------------RAEVQKLNSSRQE---------LTTQIKGLTKDVNRLEAENKQLIAMRADID 166 (240)
Q Consensus 115 -----~lk~El~Q~--------------r~e~q~L~a~RQE---------Lt~qvq~ltqeL~r~~~d~qqip~l~aEid 166 (240)
.-...+.++ ..++..|...... ....|..|...+.......+.+|.+..++.
T Consensus 234 ~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~~~~~dl~~~~~e~~ 313 (1111)
T PF13514_consen 234 PDFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYRKARQDLPRLEAELA 313 (1111)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333333 3333333333222 233445556666666777788999999999
Q ss_pred HHHHHHHHHHHhhh
Q 026318 167 GIRSELVEARRAFE 180 (240)
Q Consensus 167 ~lrqElqr~Raa~E 180 (240)
.++.++..+-..+.
T Consensus 314 ~~~~~~~~~~~~lg 327 (1111)
T PF13514_consen 314 ELEAELRALLAQLG 327 (1111)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999888877776
No 44
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.20 E-value=1.3 Score=41.69 Aligned_cols=174 Identities=19% Similarity=0.302 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhhhhhhH--------hhHHHHHHHHhhHHHHHHH-hhhhhhhhhhhhHhHHH-HHhhhhhhhhhh-----
Q 026318 46 QRREMHRIISENRHAID--------DNTHLQRELTASKDEIHRL-GQIIPKLRADKEAHTRE-LFDRGLKLEVEL----- 110 (240)
Q Consensus 46 Q~~EiqrLl~dNqRLAa--------thvaLrqeL~aaq~El~~l-~~~i~~i~ae~e~q~Re-l~ek~~KmEAel----- 110 (240)
-|.|+.+=+.|=+++.. +.=.|=+|--.|-.+++.+ ...+..|++=.-.+.+. -|+=.+|+=-.|
T Consensus 71 sC~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~~aRl~ak~~WYeWR~kllegLk~~L~ 150 (312)
T smart00787 71 SCKELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQLVKTFARLEAKKMWYEWRMKLLEGLKEGLD 150 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677766666555542 2223556665555555543 35555555544444433 244444443333
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHHHHHHHhhhhhhhcchHH
Q 026318 111 RASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAM-RADIDGIRSELVEARRAFEFEKKANEEQ 189 (240)
Q Consensus 111 Ra~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l-~aEid~lrqElqr~Raa~EyEKK~~~e~ 189 (240)
+..+.|+.|...+..+.+.+...--+|....+.|..|+..++.-...+-.. ..|++.++.+|...=..++.-++.-.+.
T Consensus 151 ~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~ 230 (312)
T smart00787 151 ENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEEL 230 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233677777777777777777777777777777777666554433322110 2344444444444444444444555555
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhhhcc
Q 026318 190 IEQKQAMENNLISMAREIEKLRAELLNTER 219 (240)
Q Consensus 190 ~Eq~qaMEknlisMarEvEKLRaElanaek 219 (240)
-+|++..+..+=....+...++.+|+.+++
T Consensus 231 ~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 231 EEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555556666555554
No 45
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.15 E-value=5.8 Score=38.31 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=9.6
Q ss_pred HHHHHHHhhHHHHHHHhhhhhhhh
Q 026318 66 HLQRELTASKDEIHRLGQIIPKLR 89 (240)
Q Consensus 66 aLrqeL~aaq~El~~l~~~i~~i~ 89 (240)
.|+.++...++++..+...+..++
T Consensus 185 ~l~~~i~~l~~~i~~~~~~i~~~~ 208 (562)
T PHA02562 185 TLDMKIDHIQQQIKTYNKNIEEQR 208 (562)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 334444444444443333333333
No 46
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.05 E-value=9.8 Score=42.15 Aligned_cols=29 Identities=10% Similarity=0.007 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhhHHHHHH
Q 026318 42 EIEIQRREMHRIISENRHAIDDNTHLQRE 70 (240)
Q Consensus 42 ~La~Q~~EiqrLl~dNqRLAathvaLrqe 70 (240)
+|+.-..+|..|-..-..+.+...+|.+.
T Consensus 743 ri~el~~~IaeL~~~i~~l~~~l~~l~~r 771 (1353)
T TIGR02680 743 RIAELDARLAAVDDELAELARELRALGAR 771 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333333333333333
No 47
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=94.02 E-value=1.2 Score=45.69 Aligned_cols=121 Identities=13% Similarity=0.233 Sum_probs=72.1
Q ss_pred hhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhh-----hHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHH
Q 026318 57 NRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADK-----EAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLN 131 (240)
Q Consensus 57 NqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~-----e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~ 131 (240)
|.....+-.=|.++|...+++|...-..+.+.+.++ +.+...+++++..+++++-......+++.+.-.+ =.
T Consensus 262 ~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~---~h 338 (726)
T PRK09841 262 AAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKK---DH 338 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cC
Confidence 344444555566666666766666666666666655 3345556666666665554443333333221100 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318 132 SSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (240)
Q Consensus 132 a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (240)
-.=+.|..+++.+.++++++++..+++|....++..|..+..-.|..|+
T Consensus 339 P~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~ 387 (726)
T PRK09841 339 PTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYL 387 (726)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 0113444566777888888888888899888888888777777665553
No 48
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.95 E-value=14 Score=41.81 Aligned_cols=180 Identities=14% Similarity=0.224 Sum_probs=136.3
Q ss_pred CCccchHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhh---------------------hh
Q 026318 34 FHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRA---------------------DK 92 (240)
Q Consensus 34 p~p~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~a---------------------e~ 92 (240)
|-|+.-=..+..+..+|.+=++| +-+++...++.+..++.-|..|+..++.+.- +-
T Consensus 833 ~~pe~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a 909 (1486)
T PRK04863 833 ADPEAELRQLNRRRVELERALAD---HESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADETLADRVEEIREQLDEAEEA 909 (1486)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcCCccHHHHHHHHHHHHHHHHHH
Confidence 44432223444566666666654 5677888888888888888888887776532 12
Q ss_pred hHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhhhhhHH
Q 026318 93 EAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE------------AENKQLIA 160 (240)
Q Consensus 93 e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~------------~d~qqip~ 160 (240)
..+++.....+..+|.++.....--.+..+++.+++......|.+..++-.|+.=.++.. .+..-.+.
T Consensus 910 ~~y~~~~~~~L~qLE~~l~~L~~Dp~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~l~~~~~~~~~ 989 (1486)
T PRK04863 910 KRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEK 989 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHhhcchhhhHH
Confidence 234566667777788777777666678888889999999999999988888876555432 23344789
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 026318 161 MRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLN 216 (240)
Q Consensus 161 l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaElan 216 (240)
|+..|..+.++...+|..+.--++.+...-...+..++++-.-..+++++..++.+
T Consensus 990 Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~ 1045 (1486)
T PRK04863 990 LRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQD 1045 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888888899999999999999999998865
No 49
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=93.77 E-value=7.7 Score=38.38 Aligned_cols=152 Identities=19% Similarity=0.236 Sum_probs=89.6
Q ss_pred HHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhc------chhhHHHHHHHHHHH
Q 026318 54 ISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRA------SEPVRAEVVQLRAEV 127 (240)
Q Consensus 54 l~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa------~e~lk~El~Q~r~e~ 127 (240)
+.+..-+..-.--++.++...+.|+.--+.-+..+-..+|.-|-.|=+++.. ..+.. .+.++.|..+++.++
T Consensus 213 l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~--~~~~~~~~~~el~~l~~E~~~~~ee~ 290 (511)
T PF09787_consen 213 LRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLE--EGFDSSTNSIELEELKQERDHLQEEI 290 (511)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc--cccccccchhcchhhHHHHHHHHHHH
Confidence 3333444444455666666666666666666666667777777776664444 12222 467888999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------hHHH--HHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHH
Q 026318 128 QKLNSSRQELTTQIKGLTKDVNRLEAENKQ---------LIAM--RADIDGIRSELVEARRAFEFEKKANEEQIEQKQAM 196 (240)
Q Consensus 128 q~L~a~RQELt~qvq~ltqeL~r~~~d~qq---------ip~l--~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaM 196 (240)
+.|...=+.|..+++.+..++.....-.++ -|.+ .+|+.-+.+|+.+.+...- +...--+.+..
T Consensus 291 ~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~-----~~~s~~~~k~~ 365 (511)
T PF09787_consen 291 QLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELS-----RQKSPLQLKLK 365 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH-----HhcChHHHHHH
Confidence 888888777777777766665542211111 1111 3344455555555543222 22223345555
Q ss_pred HHhHHHHHHHHHHHHHHHhhh
Q 026318 197 ENNLISMAREIEKLRAELLNT 217 (240)
Q Consensus 197 EknlisMarEvEKLRaElana 217 (240)
+| -.|+.|||..+.+.
T Consensus 366 ~k-----e~E~q~lr~~l~~~ 381 (511)
T PF09787_consen 366 EK-----ESEIQKLRNQLSAR 381 (511)
T ss_pred HH-----HHHHHHHHHHHHHH
Confidence 55 68999999998774
No 50
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=93.68 E-value=2 Score=38.63 Aligned_cols=77 Identities=30% Similarity=0.417 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHHHHH----HhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHH
Q 026318 140 QIKGLTKDVNRLEAEN----KQLIAMRADIDGIRSELVEAR----RAFEFEKKANEEQIEQKQAMENNLISMAREIEKLR 211 (240)
Q Consensus 140 qvq~ltqeL~r~~~d~----qqip~l~aEid~lrqElqr~R----aa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLR 211 (240)
.+.....+|++..++. .++..+.+|+-.|+.++..+. ..+-+- ..-+.-.+...=...+-++-+|||.||
T Consensus 67 ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~--~~deak~~~~~~~~~~~~l~~e~erL~ 144 (202)
T PF06818_consen 67 ELEVCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLS--ESDEAKAQRQAGEDELGSLRREVERLR 144 (202)
T ss_pred hHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhcccc--ccchhHHhhccccccchhHHHHHHHHH
Confidence 4444455555555554 344555556666666655541 000000 111112222223455778999999999
Q ss_pred HHHhhhc
Q 026318 212 AELLNTE 218 (240)
Q Consensus 212 aElanae 218 (240)
+||..-.
T Consensus 145 aeL~~er 151 (202)
T PF06818_consen 145 AELQRER 151 (202)
T ss_pred HHHHHHH
Confidence 9998643
No 51
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=93.64 E-value=15 Score=42.64 Aligned_cols=49 Identities=24% Similarity=0.367 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhh
Q 026318 39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPK 87 (240)
Q Consensus 39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~ 87 (240)
|++++..+..-+..|..+=.-|=.-|--|..+|+..++.+..++-...+
T Consensus 969 l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~k 1017 (1930)
T KOG0161|consen 969 LEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAK 1017 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444455444444455555555666666555555444433
No 52
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=93.50 E-value=8.9 Score=38.24 Aligned_cols=169 Identities=19% Similarity=0.252 Sum_probs=103.8
Q ss_pred HHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHH----HH
Q 026318 48 REMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVV----QL 123 (240)
Q Consensus 48 ~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~----Q~ 123 (240)
.|.+.--.|-+-.-...-++++++..|++|+.++.....+++++ +--|.+...++|+++.++-+=.++|+ |+
T Consensus 109 ~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtr----l~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Ql 184 (499)
T COG4372 109 SELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTR----LKTLAEQRRQLEAQAQSLQASQKQLQASATQL 184 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666666666677889999999999999999999988875 56688999999999998766666665 44
Q ss_pred HHHHHHHHHH-------HHHHH---HHHHHHHHHHHHHHHhhhhhHH----HHHHHHHHHHHHHHHHHhhhhhhhcchHH
Q 026318 124 RAEVQKLNSS-------RQELT---TQIKGLTKDVNRLEAENKQLIA----MRADIDGIRSELVEARRAFEFEKKANEEQ 189 (240)
Q Consensus 124 r~e~q~L~a~-------RQELt---~qvq~ltqeL~r~~~d~qqip~----l~aEid~lrqElqr~Raa~EyEKK~~~e~ 189 (240)
.+++..|... -|+|. ..+|..++||++..+-.||... ..+-|+..-+++- +|.. --.+.
T Consensus 185 k~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~ia-ar~e------~I~~r 257 (499)
T COG4372 185 KSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIA-ARAE------QIRER 257 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHH------HHHHH
Confidence 4444443321 11221 2466777777776666555433 3334444444432 1111 11233
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhh-hcccccccccc
Q 026318 190 IEQKQAMENNLISMAREIEKLRAELLN-TERRACGLGKI 227 (240)
Q Consensus 190 ~Eq~qaMEknlisMarEvEKLRaElan-aekRa~~~~~~ 227 (240)
-++.|..|.-..-.-+||+.|-+=... .+-|...+++.
T Consensus 258 e~~lq~lEt~q~~leqeva~le~yyQ~y~~lr~q~~a~~ 296 (499)
T COG4372 258 ERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQAAATQ 296 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 456666777777777788777654322 34444444433
No 53
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=93.03 E-value=0.73 Score=34.15 Aligned_cols=43 Identities=23% Similarity=0.409 Sum_probs=32.4
Q ss_pred hhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 105 KLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (240)
Q Consensus 105 KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqe 147 (240)
-|++|+||-..+..||..+++....+..--||--.+.+.|..+
T Consensus 5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~e 47 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQE 47 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999988777766655555555555444
No 54
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=92.90 E-value=2.7 Score=32.93 Aligned_cols=78 Identities=21% Similarity=0.288 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHH
Q 026318 125 AEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMA 204 (240)
Q Consensus 125 ~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMa 204 (240)
..+.++...-.-|..++..++.| +.++|.+...++ --.|+|..|+..++..+. .+.+..+|++.+|+++++-.
T Consensus 17 ~~~~~k~~~~~~lE~k~~rl~~E--k~kadqkyfa~m-r~~d~l~~e~k~L~~~~~----Ks~~~i~~L~~~E~~~~~~l 89 (96)
T PF08647_consen 17 EQADKKVKELTILEQKKLRLEAE--KAKADQKYFAAM-RSKDALDNEMKKLNTQLS----KSSELIEQLKETEKEFVRKL 89 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-HhHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444 334454444444 458888888888888774 56788999999999999998
Q ss_pred HHHHH
Q 026318 205 REIEK 209 (240)
Q Consensus 205 rEvEK 209 (240)
.+.||
T Consensus 90 ~~~Ek 94 (96)
T PF08647_consen 90 KNLEK 94 (96)
T ss_pred HHhhc
Confidence 88876
No 55
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=92.89 E-value=5 Score=34.25 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhhhc--ccccccccc
Q 026318 202 SMAREIEKLRAELLNTE--RRACGLGKI 227 (240)
Q Consensus 202 sMarEvEKLRaElanae--kRa~~~~~~ 227 (240)
-+..||..||++++++. .-=|..|.+
T Consensus 135 ki~~ei~~lr~~iE~~K~~~lr~~~g~i 162 (177)
T PF07798_consen 135 KIDTEIANLRTEIESLKWDTLRWLVGVI 162 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777778888887643 334766665
No 56
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=92.85 E-value=6.9 Score=35.13 Aligned_cols=40 Identities=25% Similarity=0.422 Sum_probs=28.0
Q ss_pred HHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhh
Q 026318 50 MHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLR 89 (240)
Q Consensus 50 iqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ 89 (240)
|..|=.-|++|++..-.|++.+..+.+.=.+|..-|.+++
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~ 49 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLR 49 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567888888888888887777777666666666554
No 57
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.83 E-value=7.7 Score=35.65 Aligned_cols=136 Identities=19% Similarity=0.292 Sum_probs=76.5
Q ss_pred HHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhh----------hHhHHHHHhhhhhhhhhhhcchhhHH
Q 026318 49 EMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADK----------EAHTRELFDRGLKLEVELRASEPVRA 118 (240)
Q Consensus 49 EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~----------e~q~Rel~ek~~KmEAelRa~e~lk~ 118 (240)
.||.|-..+-||+.-.-.-+.+|.+++-|+-+++..+.+++.+. +..++++=+|+.+.|-.+-++ .=-.
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v-~~~~ 89 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAV-KDER 89 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccHH
Confidence 34455555555555444555555555555555554444443332 344566667777777766333 2223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchH
Q 026318 119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEE 188 (240)
Q Consensus 119 El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e 188 (240)
|+..+-.|++.+..-.-.|..++..+..++++... ++-.++..+..++..+--++..+|.|=.+--+
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~---~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e 156 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEK---EIEDLKERLERLEKNLAEAEARLEEEVAEIRE 156 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666666666554433 24556666666666666666666665444333
No 58
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=92.73 E-value=3.7 Score=43.03 Aligned_cols=133 Identities=26% Similarity=0.336 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhHHHHHH--HHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhh-hhcchhhHHH
Q 026318 43 IEIQRREMHRIISENRHAIDDNTHLQRE--LTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVE-LRASEPVRAE 119 (240)
Q Consensus 43 La~Q~~EiqrLl~dNqRLAathvaLrqe--L~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAe-lRa~e~lk~E 119 (240)
|.-|-.||+||=.+=+-|-.+- |+|- |.+--.||.++..+-..-++|.| ..|. ..++-|.- .+.-|..+.|
T Consensus 68 is~qlqE~rrle~e~~~lre~s--l~qkmrLe~qa~Ele~l~~ae~agraEae-~Lra---ala~ae~~R~~lEE~~q~E 141 (739)
T PF07111_consen 68 ISRQLQELRRLEEEVRALRETS--LQQKMRLEAQAEELEALARAEKAGRAEAE-ELRA---ALAGAEVVRKNLEEGSQRE 141 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHhhhhhHH-HHHH---HHhhHHHHHHhhHHHHHHH
Confidence 5566688888887776555542 2222 33333477777655554555532 1121 11111110 0111344455
Q ss_pred HHHHHH----HHHHHHHHHH----HHHHHHHHHHHHHHHHH----HhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 026318 120 VVQLRA----EVQKLNSSRQ----ELTTQIKGLTKDVNRLE----AENKQLIAMRADIDGIRSELVEARRAFEF 181 (240)
Q Consensus 120 l~Q~r~----e~q~L~a~RQ----ELt~qvq~ltqeL~r~~----~d~qqip~l~aEid~lrqElqr~Raa~Ey 181 (240)
|..++. ++..|+.+=| .|+.+++.|.++|.-.. .+.+.+.....|.|.|++++-.....||-
T Consensus 142 Lee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~ 215 (739)
T PF07111_consen 142 LEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEA 215 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 544332 2334444333 47778888888765444 46778888888999999988777766664
No 59
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=92.53 E-value=7.4 Score=37.02 Aligned_cols=160 Identities=16% Similarity=0.247 Sum_probs=83.0
Q ss_pred HHH-HHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhh------hh----hhh--Hh---------HHHHHhhhhh
Q 026318 48 REM-HRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKL------RA----DKE--AH---------TRELFDRGLK 105 (240)
Q Consensus 48 ~Ei-qrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i------~a----e~e--~q---------~Rel~ek~~K 105 (240)
+.| |.|+..|+-|....-.|-++|.++.+.|..|++-+..= -+ |.+ .. ....+.+...
T Consensus 82 A~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (306)
T PF04849_consen 82 ARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQ 161 (306)
T ss_pred HHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchh
Confidence 456 89999999999888999999999988888887654310 00 000 00 0000111222
Q ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 026318 106 LEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEA-ENKQLIAMRADIDGIRSELVEARRAFEFEKK 184 (240)
Q Consensus 106 mEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~-d~qqip~l~aEid~lrqElqr~Raa~EyEKK 184 (240)
+++==+-.-.+..|-.++|.|+.+|...--.+-.+-|.|..|..+.-+ -++||..|..||..-..|+ ..-..
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~-------~rQQE 234 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEEN-------RRQQE 234 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHH-------HHHHH
Confidence 232223333455677777777777776666666666666555433222 2334444444333222222 22222
Q ss_pred cchHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 026318 185 ANEEQIEQKQAMENNLISMAREIEKLRAEL 214 (240)
Q Consensus 185 ~~~e~~Eq~qaMEknlisMarEvEKLRaEl 214 (240)
--..++-|.-..++.+=..+-|-|+|..-|
T Consensus 235 EIt~LlsqivdlQ~r~k~~~~EnEeL~q~L 264 (306)
T PF04849_consen 235 EITSLLSQIVDLQQRCKQLAAENEELQQHL 264 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 223344444444444444444444444443
No 60
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.35 E-value=3.8 Score=33.80 Aligned_cols=69 Identities=20% Similarity=0.416 Sum_probs=60.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318 112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (240)
Q Consensus 112 a~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (240)
-++.|.+.+.+.-+|+..|...-.-|..+=..+++|+.++-.++..+-+...+++.|+.++..+..-++
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~ 85 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQ 85 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999999999999999999999999999999999999999987766544
No 61
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=91.82 E-value=4.3 Score=41.32 Aligned_cols=78 Identities=21% Similarity=0.303 Sum_probs=49.2
Q ss_pred HHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhc----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 75 KDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRA----SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR 150 (240)
Q Consensus 75 q~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa----~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r 150 (240)
+.++...-..+..+++|-.. +--++.+||.|+.- ..-++.+|.-+|++...=...|.++..++|.|.+||+=
T Consensus 140 re~~~~~~~~l~~leAe~~~----~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f 215 (546)
T KOG0977|consen 140 REKLDDYLSRLSELEAEINT----LKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAF 215 (546)
T ss_pred HHHHHHHhhhhhhhhhHHHH----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33333334444444444333 45566677766643 25566666666666666677899999999999999987
Q ss_pred HHHhhh
Q 026318 151 LEAENK 156 (240)
Q Consensus 151 ~~~d~q 156 (240)
......
T Consensus 216 ~~~~h~ 221 (546)
T KOG0977|consen 216 LKRIHK 221 (546)
T ss_pred HHhccH
Confidence 664443
No 62
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=91.73 E-value=25 Score=39.07 Aligned_cols=15 Identities=20% Similarity=0.503 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHHHH
Q 026318 39 LEEEIEIQRREMHRI 53 (240)
Q Consensus 39 LEe~La~Q~~EiqrL 53 (240)
|+++|+.-..+|..|
T Consensus 754 L~~~i~~l~~~l~~l 768 (1353)
T TIGR02680 754 VDDELAELARELRAL 768 (1353)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555554444444
No 63
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.71 E-value=15 Score=37.41 Aligned_cols=40 Identities=28% Similarity=0.429 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318 141 IKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (240)
Q Consensus 141 vq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (240)
...+...++..++...++|....|+..|..|..-.|..|+
T Consensus 354 ~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~ 393 (754)
T TIGR01005 354 ESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYE 393 (754)
T ss_pred HHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666666666666554
No 64
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.71 E-value=7.1 Score=32.73 Aligned_cols=128 Identities=23% Similarity=0.244 Sum_probs=92.4
Q ss_pred HHHHHHHhhHHHHHHHhhhhhhh---hhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 66 HLQRELTASKDEIHRLGQIIPKL---RADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIK 142 (240)
Q Consensus 66 aLrqeL~aaq~El~~l~~~i~~i---~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq 142 (240)
+||-|...+..=...+..-+..+ ....|.+|..|-.|+.-+|.+|-.++.==.++...-.+..+..+.=.-|+.+|+
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq 83 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQ 83 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHH
Confidence 45555555554444444333333 346788889999999999998876655545555554555555444457999999
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHH
Q 026318 143 GLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK 193 (240)
Q Consensus 143 ~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~ 193 (240)
.|-.+|..+...+...-.-..+.|.-=.++-|-..++|.+....-..|+.+
T Consensus 84 ~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel 134 (143)
T PF12718_consen 84 LLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEEL 134 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999998888998888889999999988877666666654
No 65
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=91.66 E-value=16 Score=37.59 Aligned_cols=149 Identities=17% Similarity=0.305 Sum_probs=88.9
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHH---HHHhhhhhhhhhhhcchh------hHHHHHHHHHHHHHHHHHHH
Q 026318 65 THLQRELTASKDEIHRLGQIIPKLRADKEAHTR---ELFDRGLKLEVELRASEP------VRAEVVQLRAEVQKLNSSRQ 135 (240)
Q Consensus 65 vaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~R---el~ek~~KmEAelRa~e~------lk~El~Q~r~e~q~L~a~RQ 135 (240)
..|+.+-+..++.++.|+.-+..++.|++..++ +|=..+.+|...+....+ ....-.++..++..|.....
T Consensus 18 ~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE 97 (617)
T PF15070_consen 18 QQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELE 97 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHH
Confidence 467888888888999999888899988886544 444455555555442210 11122456666666666666
Q ss_pred HHHHHHHHHHHHHHHHH----HhhhhhHHHHHHHHHHH----------HHHHHHHHhhhhhhhcchHHHHHHHHHHHhHH
Q 026318 136 ELTTQIKGLTKDVNRLE----AENKQLIAMRADIDGIR----------SELVEARRAFEFEKKANEEQIEQKQAMENNLI 201 (240)
Q Consensus 136 ELt~qvq~ltqeL~r~~----~d~qqip~l~aEid~lr----------qElqr~Raa~EyEKK~~~e~~Eq~qaMEknli 201 (240)
.|.++++...++-+.+. .--.+|-.+.-.++.+. ..++.-++++----.-|-++-+|+..|+..||
T Consensus 98 ~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv 177 (617)
T PF15070_consen 98 SLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFV 177 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 66666666544333221 12233333333333332 33333344444444567888999999999999
Q ss_pred HHHHH----HHHHHHH
Q 026318 202 SMARE----IEKLRAE 213 (240)
Q Consensus 202 sMarE----vEKLRaE 213 (240)
.|..+ ..+|-+|
T Consensus 178 ~ltne~~elt~~lq~E 193 (617)
T PF15070_consen 178 KLTNENMELTSALQSE 193 (617)
T ss_pred HHHHhhhHhhHHHHHH
Confidence 99887 4555554
No 66
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.60 E-value=2.6 Score=37.49 Aligned_cols=14 Identities=7% Similarity=0.245 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHhh
Q 026318 203 MAREIEKLRAELLN 216 (240)
Q Consensus 203 MarEvEKLRaElan 216 (240)
.-.|++.|++++..
T Consensus 151 ~~~~~~~l~~~~~~ 164 (206)
T PRK10884 151 AQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555444
No 67
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.59 E-value=20 Score=39.85 Aligned_cols=26 Identities=4% Similarity=0.153 Sum_probs=13.6
Q ss_pred HHHHHHhhhhhhHhhHHHHHHHHhhH
Q 026318 50 MHRIISENRHAIDDNTHLQRELTASK 75 (240)
Q Consensus 50 iqrLl~dNqRLAathvaLrqeL~aaq 75 (240)
++++.++=++++..|..|.+.++..+
T Consensus 822 l~~~~~~~k~~~~~~~~l~~~i~~~E 847 (1293)
T KOG0996|consen 822 LEKLTASVKRLAELIEYLESQIAELE 847 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544433
No 68
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=91.54 E-value=24 Score=38.52 Aligned_cols=100 Identities=26% Similarity=0.356 Sum_probs=51.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHH-HH
Q 026318 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQI-EQ 192 (240)
Q Consensus 114 e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~-Eq 192 (240)
..++.++..+.....-|.+.=+++..+-..+.+.|.... +.+...+.++++.++.+....+..++-+-.+--+.+ ++
T Consensus 355 ~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~--~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~ 432 (1201)
T PF12128_consen 355 PEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAF--NRQQERLQAQQDEIREEKAERREQIEEEYQALEQELRQQ 432 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443333 346778888888888888888777765443332222 23
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhc
Q 026318 193 KQAMENNLISMAREIEKLRAELLNTE 218 (240)
Q Consensus 193 ~qaMEknlisMarEvEKLRaElanae 218 (240)
.+.... ....+..++..+++...
T Consensus 433 ~~~~~~---~~~~~~~~~~~~l~~l~ 455 (1201)
T PF12128_consen 433 SQEQLE---ELQEQREQLKSELAELK 455 (1201)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHH
Confidence 443333 23344444444444433
No 69
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=91.51 E-value=11 Score=34.61 Aligned_cols=66 Identities=20% Similarity=0.275 Sum_probs=33.9
Q ss_pred HHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 69 RELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQI 141 (240)
Q Consensus 69 qeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qv 141 (240)
.++....+...-......++++|.+.=-..+.+.-.. .+.++.++.+..+|++++..-...+..+.
T Consensus 17 ~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e-------~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 17 LEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIE-------LEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444433333333333 34777777777777777766655555544
No 70
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.32 E-value=12 Score=34.41 Aligned_cols=115 Identities=19% Similarity=0.249 Sum_probs=54.0
Q ss_pred hhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHh------HHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHH
Q 026318 58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAH------TRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLN 131 (240)
Q Consensus 58 qRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q------~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~ 131 (240)
..+.+....|..++...+.++..+...+..++++.... ...|+++..-...++ +..+.++.+++.++..+.
T Consensus 140 ~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~---~~~~~~~~~~~~~l~~~~ 216 (423)
T TIGR01843 140 STLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLEL---LELERERAEAQGELGRLE 216 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH---HHHHHHHHHHHhHHHHHH
Confidence 33444555566666666666666555555544433221 223444433333322 245555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 026318 132 SSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR 177 (240)
Q Consensus 132 a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra 177 (240)
+....+..++..+..++.....+ ..-....++..++.++..+++
T Consensus 217 ~~l~~~~~~l~~~~~~~~~~~~~--~~~~~~~~l~~~~~~l~~~~~ 260 (423)
T TIGR01843 217 AELEVLKRQIDELQLERQQIEQT--FREEVLEELTEAQARLAELRE 260 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554433222 222333444444444444433
No 71
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=91.26 E-value=6.9 Score=37.09 Aligned_cols=102 Identities=20% Similarity=0.332 Sum_probs=75.2
Q ss_pred HHHHhhhhhhhhhhhcch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHH
Q 026318 97 RELFDRGLKLEVELRASE---PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE----NKQLIAMRADIDGIR 169 (240)
Q Consensus 97 Rel~ek~~KmEAelRa~e---~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d----~qqip~l~aEid~lr 169 (240)
+.|++++..++-++.... ....++.-+.++++.|...+.++..+|+.+.++.+..+-+ .+.+..++.+.|.++
T Consensus 134 ~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~h 213 (294)
T COG1340 134 RELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELH 213 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888877765 3445555666777777777777777777777777666544 355778999999999
Q ss_pred HHHHHHHHhhhhhhhcchHHHHHHHHHHH
Q 026318 170 SELVEARRAFEFEKKANEEQIEQKQAMEN 198 (240)
Q Consensus 170 qElqr~Raa~EyEKK~~~e~~Eq~qaMEk 198 (240)
.++...+..++-....+.....-....++
T Consensus 214 e~~ve~~~~~~e~~ee~~~~~~elre~~k 242 (294)
T COG1340 214 EEFVELSKKIDELHEEFRNLQNELRELEK 242 (294)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999888877777666655555555
No 72
>PRK09039 hypothetical protein; Validated
Probab=91.19 E-value=13 Score=35.25 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=9.4
Q ss_pred chHHHHHHHHHHHHHH
Q 026318 38 TLEEEIEIQRREMHRI 53 (240)
Q Consensus 38 ~LEe~La~Q~~EiqrL 53 (240)
.|.+.|..+..|+.+|
T Consensus 43 fLs~~i~~~~~eL~~L 58 (343)
T PRK09039 43 FLSREISGKDSALDRL 58 (343)
T ss_pred HHHHHHhhHHHHHHHH
Confidence 4566666666665555
No 73
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=91.06 E-value=35 Score=39.52 Aligned_cols=199 Identities=20% Similarity=0.289 Sum_probs=111.6
Q ss_pred cchHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhh--------------hhhhHhHHHHHhh
Q 026318 37 MTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLR--------------ADKEAHTRELFDR 102 (240)
Q Consensus 37 ~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~--------------ae~e~q~Rel~ek 102 (240)
..|.+-|..+.+||..|-.+|.+|-.--..+++-+--.+.=++....--.+.+ .+...=-++|--+
T Consensus 125 r~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~ 204 (1822)
T KOG4674|consen 125 RQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKV 204 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34667788888899999999999887777766654444333333322222222 2222222333333
Q ss_pred hhhhhhhhhc----chhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h----------------
Q 026318 103 GLKLEVELRA----SEPVR-------AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEA-E---------------- 154 (240)
Q Consensus 103 ~~KmEAelRa----~e~lk-------~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~-d---------------- 154 (240)
..|+..-=|- +.-|+ .++.-+..-++.|.....+|+..|+.+..++..++- .
T Consensus 205 ~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~k 284 (1822)
T KOG4674|consen 205 NEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKK 284 (1822)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3333322222 22222 233333333344444555566666555555544331 1
Q ss_pred -----hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHH----HHHHHHHHHhhhcccccccc
Q 026318 155 -----NKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAR----EIEKLRAELLNTERRACGLG 225 (240)
Q Consensus 155 -----~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMar----EvEKLRaElanaekRa~~~~ 225 (240)
..+...+..+...+...|-..-.-++-=...+.++.+|+..|+..+-.+.. +|.+|-++|.++.+.-.+++
T Consensus 285 L~eL~ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~ 364 (1822)
T KOG4674|consen 285 LNELWKSKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSATG 364 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhc
Confidence 122333344444455555555555566677899999999999998877764 55678889999888877766
Q ss_pred ccchhh--hhhh
Q 026318 226 KISFFL--GALT 235 (240)
Q Consensus 226 ~~g~~~--~~~~ 235 (240)
..+|.- ||+.
T Consensus 365 ~~~~~s~~~a~~ 376 (1822)
T KOG4674|consen 365 ESSMVSEKAALA 376 (1822)
T ss_pred ccchhhhHHHHH
Confidence 666554 4444
No 74
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=91.01 E-value=15 Score=42.23 Aligned_cols=164 Identities=20% Similarity=0.255 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHH
Q 026318 45 IQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLR 124 (240)
Q Consensus 45 ~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r 124 (240)
+-..++.-+-.||-||-..|.-+-+++..++..|-....- ...-+..+.+.-+++.++.-|= .|+.-=..+|
T Consensus 1164 i~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~-~q~~a~s~~e~~~i~~~v~~vN-------ll~EsN~~LR 1235 (1822)
T KOG4674|consen 1164 IAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERAS-SQKSAVSDDEHKEILEKVEEVN-------LLRESNKVLR 1235 (1822)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccchhhhhhhhHHHHHHHHHH-------HHHHhHHHHH
Confidence 3344556677788888888888888877777666544321 1123444555555666555554 3344445556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhH-HHH
Q 026318 125 AEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNL-ISM 203 (240)
Q Consensus 125 ~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknl-isM 203 (240)
.+-..+..-.|||..+|..+..++..++.++.+ ++++++....|+-.++.-.+-=|+-|-+.+++-+.-.+|- =..
T Consensus 1236 ee~~~~~~k~qEl~~~i~kl~~el~plq~~l~e---l~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL 1312 (1822)
T KOG4674|consen 1236 EENEANLEKIQELRDKIEKLNFELAPLQNELKE---LKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKL 1312 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 666666666799999999999999999988654 5667777777777777766767777788888855555543 456
Q ss_pred HHHHHHHHHHHhhhcc
Q 026318 204 AREIEKLRAELLNTER 219 (240)
Q Consensus 204 arEvEKLRaElanaek 219 (240)
..||.+|-.|+.+.++
T Consensus 1313 ~~ei~~Lk~el~~ke~ 1328 (1822)
T KOG4674|consen 1313 KSEISRLKEELEEKEN 1328 (1822)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7799999999987664
No 75
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=90.88 E-value=2.2 Score=32.00 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 026318 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR 177 (240)
Q Consensus 116 lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra 177 (240)
++..+.++...+......-..|+..=-+...-|..+..+ +-.|++|++.|++|+.+.|.
T Consensus 10 Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e---~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 10 LRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEE---NNKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhc
Confidence 444454444444443333333333333333333333333 45688999999999888774
No 76
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=90.75 E-value=27 Score=37.64 Aligned_cols=100 Identities=12% Similarity=0.161 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h---hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHH
Q 026318 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEA----E---NKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQ 189 (240)
Q Consensus 117 k~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~----d---~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~ 189 (240)
..++..++..++.+...++.+.+.+..+.+.+..... + ...+..+.+.+..+.+++..++..+. .-...
T Consensus 776 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~ 851 (1047)
T PRK10246 776 EETLTQLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENTTRQG----EIRQQ 851 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 4566777788888888888888877777666654211 1 23456667777777777766665552 11222
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhhhccc
Q 026318 190 IEQKQAMENNLISMAREIEKLRAELLNTERR 220 (240)
Q Consensus 190 ~Eq~qaMEknlisMarEvEKLRaElanaekR 220 (240)
+++.+...+.+-.+..+++.++.+......-
T Consensus 852 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 882 (1047)
T PRK10246 852 LKQDADNRQQQQALMQQIAQATQQVEDWGYL 882 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455556666777777665554433
No 77
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.70 E-value=1.7 Score=37.46 Aligned_cols=98 Identities=16% Similarity=0.230 Sum_probs=22.6
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchh
Q 026318 36 PMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEP 115 (240)
Q Consensus 36 p~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~ 115 (240)
...+++++.....|+..+.-.|-.++..-+.+-.++...+.++......|..++++...--..+-+.-..++.-=++++.
T Consensus 69 ~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~ 148 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEI 148 (194)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999998888888887777777777777777766666666555443222222222222222233345
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 026318 116 VRAEVVQLRAEVQKLNSS 133 (240)
Q Consensus 116 lk~El~Q~r~e~q~L~a~ 133 (240)
+++|+.-+..+.-.+..-
T Consensus 149 l~DE~~~L~l~~~~~e~k 166 (194)
T PF08614_consen 149 LQDELQALQLQLNMLEEK 166 (194)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555544444333333
No 78
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=90.52 E-value=28 Score=38.92 Aligned_cols=110 Identities=16% Similarity=0.202 Sum_probs=62.7
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhhhh---HhhHHHHHHHHhh---HHHHHH-HhhhhhhhhhhhhHhHHHHHhhhhhhhh
Q 026318 36 PMTLEEEIEIQRREMHRIISENRHAI---DDNTHLQRELTAS---KDEIHR-LGQIIPKLRADKEAHTRELFDRGLKLEV 108 (240)
Q Consensus 36 p~~LEe~La~Q~~EiqrLl~dNqRLA---athvaLrqeL~aa---q~El~~-l~~~i~~i~ae~e~q~Rel~ek~~KmEA 108 (240)
-.+||+-+.--..++..|...++.++ ..+--|.+.+.-- ..||++ -.+..-.=..+.+.++.+.-++..++++
T Consensus 436 ~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~ 515 (1317)
T KOG0612|consen 436 LQILEQSLVNEMQEKEKLDEKCQAVAELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEA 515 (1317)
T ss_pred hhhcccchhhHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 35677777777788888888888888 5555666444433 333443 1111222234445555666666666666
Q ss_pred hhhcc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 109 ELRAS----EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLT 145 (240)
Q Consensus 109 elRa~----e~lk~El~Q~r~e~q~L~a~RQELt~qvq~lt 145 (240)
++|.. +.+++...+++-..+++.+.|++|-.....+.
T Consensus 516 ~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~ 556 (1317)
T KOG0612|consen 516 LVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMR 556 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhh
Confidence 66654 33445555555555666666666654444333
No 79
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=90.51 E-value=9 Score=34.15 Aligned_cols=51 Identities=24% Similarity=0.332 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 026318 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDG 167 (240)
Q Consensus 117 k~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~ 167 (240)
..|+.++..++..|....+.|...|.+..+++..++.+..++-..+.+|..
T Consensus 55 ~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p 105 (251)
T PF11932_consen 55 LAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP 105 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666677777777777777777777777777777776666666665
No 80
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=90.48 E-value=0.079 Score=53.89 Aligned_cols=157 Identities=21% Similarity=0.322 Sum_probs=0.0
Q ss_pred hhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhh---hhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHH--
Q 026318 60 AIDDNTHLQRELTASKDEIHRLGQIIPKLRAD---KEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSR-- 134 (240)
Q Consensus 60 LAathvaLrqeL~aaq~El~~l~~~i~~i~ae---~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~R-- 134 (240)
++..+..||..+...++|+.++.....+.+.+ .+.++.+|-.++.-+-++.+....+|+|+.-+|..+.++...-
T Consensus 237 ~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ 316 (713)
T PF05622_consen 237 LSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENE 316 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33445667777777788887777666666543 3456777777777788888888899999888877665543321
Q ss_pred -----------HHHHHHHHHHHH-------HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHH
Q 026318 135 -----------QELTTQIKGLTK-------DVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAM 196 (240)
Q Consensus 135 -----------QELt~qvq~ltq-------eL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaM 196 (240)
.+|..+|..|.. -...+-.+.+..++++..++.+++++..+-....-+++-.-........+
T Consensus 317 ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L 396 (713)
T PF05622_consen 317 VEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQL 396 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333333333 33345566777888888889888888888777777766655555566666
Q ss_pred HHhHHHHHHHHHHHHHHHhh
Q 026318 197 ENNLISMAREIEKLRAELLN 216 (240)
Q Consensus 197 EknlisMarEvEKLRaElan 216 (240)
+..+-++.+|-+.|..|..+
T Consensus 397 ~ek~~~l~~eke~l~~e~~~ 416 (713)
T PF05622_consen 397 EEKLEALEEEKERLQEERDS 416 (713)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666777777777665543
No 81
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=90.43 E-value=32 Score=37.91 Aligned_cols=56 Identities=20% Similarity=0.468 Sum_probs=32.6
Q ss_pred hhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 026318 114 EPVRAEVVQLRAEV-QKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSEL 172 (240)
Q Consensus 114 e~lk~El~Q~r~e~-q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqEl 172 (240)
+.++..+..++.+. +.+.+.+-+...++..|.+++.++.. ++..|+.|++.++.++
T Consensus 375 d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~---~~~~L~~e~~~~~~~~ 431 (1074)
T KOG0250|consen 375 DRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEE---QINSLREELNEVKEKA 431 (1074)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 34444455555555 56666666666666666666666655 5555555555555444
No 82
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=90.40 E-value=12 Score=40.39 Aligned_cols=96 Identities=16% Similarity=0.222 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHH--------------HHHHhhhhhhhhhhhhHhHHHHHhhhhhhh
Q 026318 42 EIEIQRREMHRIISENRHAIDDNTHLQRELTASKDE--------------IHRLGQIIPKLRADKEAHTRELFDRGLKLE 107 (240)
Q Consensus 42 ~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~E--------------l~~l~~~i~~i~ae~e~q~Rel~ek~~KmE 107 (240)
++..|..+||-=|-+-+|=|..---+++||.--.++ +..+.+-+-.+++|.+.||-++--++..+|
T Consensus 327 kltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e 406 (1265)
T KOG0976|consen 327 KLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLE 406 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 567788888887877777776666666665432221 122233346788999999999999999999
Q ss_pred hhhhcchhhHHHHHHHHHHHHHHHHHHHHH
Q 026318 108 VELRASEPVRAEVVQLRAEVQKLNSSRQEL 137 (240)
Q Consensus 108 AelRa~e~lk~El~Q~r~e~q~L~a~RQEL 137 (240)
.=-+.-|++|.||+.+---+..+.+.+-++
T Consensus 407 ~~~~dhe~~kneL~~a~ekld~mgthl~ma 436 (1265)
T KOG0976|consen 407 QGKKDHEAAKNELQEALEKLDLMGTHLSMA 436 (1265)
T ss_pred hccchhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 888888999999998877666666555443
No 83
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.29 E-value=27 Score=38.52 Aligned_cols=78 Identities=17% Similarity=0.240 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhc
Q 026318 139 TQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTE 218 (240)
Q Consensus 139 ~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaElanae 218 (240)
.++..++++|..+. +.+.+-..+.+.-.+|++++-..+|-.++..-.+--|+..+++++-+...|+..|++.+.+++
T Consensus 787 ~rlkdl~keik~~k---~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~ 863 (1174)
T KOG0933|consen 787 RRLKDLEKEIKTAK---QRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVE 863 (1174)
T ss_pred hHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34555555555443 234445566677777777777777777777777777888999999999999999999988765
Q ss_pred c
Q 026318 219 R 219 (240)
Q Consensus 219 k 219 (240)
.
T Consensus 864 ~ 864 (1174)
T KOG0933|consen 864 K 864 (1174)
T ss_pred h
Confidence 3
No 84
>PHA02562 46 endonuclease subunit; Provisional
Probab=90.24 E-value=18 Score=34.92 Aligned_cols=54 Identities=11% Similarity=0.294 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 026318 126 EVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (240)
Q Consensus 126 e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (240)
.+..|...+.+|..++..+...+........+.-.+...+..++.++...|..+
T Consensus 300 ~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i 353 (562)
T PHA02562 300 RITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSL 353 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555554444444444444444444444444444444443
No 85
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.07 E-value=12 Score=32.71 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Q 026318 158 LIAMRADIDGIRSELVEARRAFE 180 (240)
Q Consensus 158 ip~l~aEid~lrqElqr~Raa~E 180 (240)
+-..+..++.+++.+...|..+.
T Consensus 86 i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 86 IEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666555
No 86
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=89.99 E-value=3.8 Score=34.39 Aligned_cols=62 Identities=19% Similarity=0.381 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 026318 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR 177 (240)
Q Consensus 115 ~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra 177 (240)
.|..|+.+++.++..|......|.+++..|++.+.-.. =..+|-.|..|+..|..-+..+|+
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~e-l~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEE-LREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555555555554443111 012344444455555555554444
No 87
>PRK11546 zraP zinc resistance protein; Provisional
Probab=89.89 E-value=1 Score=38.46 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318 129 KLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (240)
Q Consensus 129 ~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (240)
+-...||+|.++=..|...++....|-+.|-+|..||..||+.|.-.|..|+
T Consensus 62 ~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~ 113 (143)
T PRK11546 62 QTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRD 113 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777777788888899999999999999999999887776443
No 88
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=89.82 E-value=1.3 Score=46.59 Aligned_cols=60 Identities=22% Similarity=0.447 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 026318 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR 177 (240)
Q Consensus 118 ~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra 177 (240)
-||-++..++-+|.+.|--|...+-.||-++.++....+-+|.|+++++.|+|=|--+=-
T Consensus 866 GElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~Lq 925 (961)
T KOG4673|consen 866 GELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAALQ 925 (961)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999999987754433
No 89
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.56 E-value=14 Score=32.60 Aligned_cols=138 Identities=20% Similarity=0.309 Sum_probs=82.8
Q ss_pred hhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 63 DNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIK 142 (240)
Q Consensus 63 thvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq 142 (240)
.+-.|+.+++..+.-..+....+.++..| .+.|.+-..+.+.++ +.++.++.+-..|...|...+.-+ .
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~e----N~~L~epL~~a~~e~---~eL~k~L~~y~kdK~~L~~~k~rl----~ 96 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQE----NKRLSEPLKKAEEEV---EELRKQLKNYEKDKQSLQNLKARL----K 96 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 34557777776665555554444444433 445555555555443 456666666666666666555444 3
Q ss_pred HHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 026318 143 GLTKDVNRLEAEN----KQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNT 217 (240)
Q Consensus 143 ~ltqeL~r~~~d~----qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaElana 217 (240)
.+.++|..+.-+. |++-.+..|.|.|..=.. .+-+|+-.|+...++ .+|+.|.+|...+|+--++|...
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~--~~i~evqQk~~~kn~----lLEkKl~~l~~~lE~keaqL~ev 169 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE--SAIQEVQQKTGLKNL----LLEKKLQALSEQLEKKEAQLNEV 169 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555444433 344455555555554433 345667777776665 68999999999999999998654
No 90
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=89.52 E-value=9.2 Score=39.15 Aligned_cols=93 Identities=27% Similarity=0.397 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHHHhhhhhh--hcchHHHH-HHHHH
Q 026318 124 RAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLI----AMRADIDGIRSELVEARRAFEFEK--KANEEQIE-QKQAM 196 (240)
Q Consensus 124 r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip----~l~aEid~lrqElqr~Raa~EyEK--K~~~e~~E-q~qaM 196 (240)
..|++.|...-++|..++..+..++....+..+++- ...++...+.+++.--..+++.-- ..|++.++ ..++=
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s 406 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEAS 406 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555444422 334444455555555555554422 23333332 23455
Q ss_pred HHhHHHHHHHHHHHHHHHhh
Q 026318 197 ENNLISMAREIEKLRAELLN 216 (240)
Q Consensus 197 EknlisMarEvEKLRaElan 216 (240)
+.||+.++.+-|+-|+.|-.
T Consensus 407 ~~rl~~L~~qWe~~R~pL~~ 426 (594)
T PF05667_consen 407 EQRLVELAQQWEKHRAPLIE 426 (594)
T ss_pred HHHHHHHHHHHHHHHhHHHH
Confidence 88999999999999998754
No 91
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=89.16 E-value=11 Score=30.76 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 026318 144 LTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKAN 186 (240)
Q Consensus 144 ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~ 186 (240)
...||.+-..+++.|..+++++..++.++..+++..+-=+...
T Consensus 47 YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l 89 (132)
T PF07926_consen 47 YERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAEL 89 (132)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777778889999999999999999988888877655544
No 92
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=88.94 E-value=32 Score=35.93 Aligned_cols=180 Identities=21% Similarity=0.310 Sum_probs=101.3
Q ss_pred chHHHHHHHHHHHHHHHHhhhh-------hhHhhHHHHHHHHhhHHHHHHHhhhhhhhhh----hh------hHhHHHHH
Q 026318 38 TLEEEIEIQRREMHRIISENRH-------AIDDNTHLQRELTASKDEIHRLGQIIPKLRA----DK------EAHTRELF 100 (240)
Q Consensus 38 ~LEe~La~Q~~EiqrLl~dNqR-------LAathvaLrqeL~aaq~El~~l~~~i~~i~a----e~------e~q~Rel~ 100 (240)
.||..|..-..||+..-.-=+- |-.+.-.||.||...++|-..|..-+..+.. |+ |-++++.-
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~ 501 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4565555555555432211111 2333456777777777776666554444332 22 23333333
Q ss_pred hhhhhhhhhhhcc--------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 026318 101 DRGLKLEVELRAS--------------------------EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE-- 152 (240)
Q Consensus 101 ek~~KmEAelRa~--------------------------e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~-- 152 (240)
+....+|+.|.+- |..|.-..++-.|+++|...-+..-.+++.+.+|++-++
T Consensus 502 ~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 502 RQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443322 234444455555555555554444455555555443222
Q ss_pred -Hh-hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHH-------HHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 026318 153 -AE-NKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQI-------EQKQAMENNLISMAREIEKLRAELLNT 217 (240)
Q Consensus 153 -~d-~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~-------Eq~qaMEknlisMarEvEKLRaElana 217 (240)
.| .+-+-.|...|-.|+..-+|+=..+-.|-+-+.|+. -|+..-+..+.+==+||+-|.+.|+..
T Consensus 582 ~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 582 EKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 344677777777888888888777777877666654 356666677777788999999988764
No 93
>PRK11519 tyrosine kinase; Provisional
Probab=88.89 E-value=13 Score=38.11 Aligned_cols=111 Identities=14% Similarity=0.267 Sum_probs=60.1
Q ss_pred HhhHHHHHHHHhhHHHHHHHhhhhhhhhhhh-----hHhHHHHHhhhhhhhhhhhcchhhHHHHHHH----HHHHHHHHH
Q 026318 62 DDNTHLQRELTASKDEIHRLGQIIPKLRADK-----EAHTRELFDRGLKLEVELRASEPVRAEVVQL----RAEVQKLNS 132 (240)
Q Consensus 62 athvaLrqeL~aaq~El~~l~~~i~~i~ae~-----e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~----r~e~q~L~a 132 (240)
.+-.=|.++|...+++|...-..+.+.+.++ +.+.+.+++....+++++...+...+++.+. |-.+
T Consensus 267 ~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~v----- 341 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAY----- 341 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHH-----
Confidence 4444566666666666666555555555543 2344556666655554444332222222211 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 026318 133 SRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (240)
Q Consensus 133 ~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (240)
+.|..+.+.+.++++.+++....+|....++..|..+..-.+..|
T Consensus 342 --~~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY 386 (719)
T PRK11519 342 --RTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVY 386 (719)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 234455566677777777777778877776666666655555543
No 94
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=88.80 E-value=41 Score=36.86 Aligned_cols=67 Identities=15% Similarity=0.328 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (240)
Q Consensus 114 e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (240)
..++.++.++..+++.....|.++..==.-+.....+..+-....|.+.+++.++.+++...+..+.
T Consensus 774 ~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 840 (1201)
T PF12128_consen 774 QQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELN 840 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555444444333222222222222222223456666666666665555554443
No 95
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=88.74 E-value=6.7 Score=36.37 Aligned_cols=30 Identities=7% Similarity=0.129 Sum_probs=18.3
Q ss_pred hhHHHHHHHHhhHHHHHHHhhhhhhhhhhh
Q 026318 63 DNTHLQRELTASKDEIHRLGQIIPKLRADK 92 (240)
Q Consensus 63 thvaLrqeL~aaq~El~~l~~~i~~i~ae~ 92 (240)
+-.-|.+++..++++|......+.+.+.++
T Consensus 171 a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 200 (362)
T TIGR01010 171 TIAFAENEVKEAEQRLNATKAELLKYQIKN 200 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344566666666666666666666665544
No 96
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.59 E-value=8.6 Score=39.63 Aligned_cols=120 Identities=17% Similarity=0.302 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhh-----hhhhhHhHHHHH-----hhhhhhhhhhhcchh
Q 026318 46 QRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKL-----RADKEAHTRELF-----DRGLKLEVELRASEP 115 (240)
Q Consensus 46 Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i-----~ae~e~q~Rel~-----ek~~KmEAelRa~e~ 115 (240)
...||...-.||++|+.-.-+|+.++..+..-+--+..+..++ +-+++.-.+++. +++.|||++|.-...
T Consensus 329 ~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~ 408 (654)
T KOG4809|consen 329 RLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHN 408 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999887766555555544444 445666666654 789999998865433
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 026318 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIR 169 (240)
Q Consensus 116 lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lr 169 (240)
.-.| ++++ ......++.|-...--..+++.++++++..+=.+-+|.++++
T Consensus 409 ~~dd---ar~~-pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneK 458 (654)
T KOG4809|consen 409 IEDD---ARMN-PEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEK 458 (654)
T ss_pred hhHh---hhcC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2222 2221 133445555666666666666666666666666666666554
No 97
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=88.42 E-value=32 Score=36.58 Aligned_cols=81 Identities=20% Similarity=0.368 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhH------HHHHHHHHH
Q 026318 136 ELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNL------ISMAREIEK 209 (240)
Q Consensus 136 ELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknl------isMarEvEK 209 (240)
++..+|..|++++.+--.++=..|.|+.=++.|+-|+-.+=.+=+-|-|..++-+||- +.+.+ -.+--=-|.
T Consensus 646 ~~k~KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~q--ik~~~~~a~~~~~lkek~e~ 723 (762)
T PLN03229 646 NLQEKIESLNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQ--IKQKIAEALNSSELKEKFEE 723 (762)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH--HHHHHHHHhccHhHHHHHHH
Confidence 4467889999999998889989999999999999999888878888888888888873 22222 223334688
Q ss_pred HHHHHhhhc
Q 026318 210 LRAELLNTE 218 (240)
Q Consensus 210 LRaElanae 218 (240)
|++||+.+.
T Consensus 724 l~~e~~~~~ 732 (762)
T PLN03229 724 LEAELAAAR 732 (762)
T ss_pred HHHHHHHhh
Confidence 999997643
No 98
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=88.19 E-value=26 Score=36.20 Aligned_cols=124 Identities=18% Similarity=0.345 Sum_probs=70.3
Q ss_pred hhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---
Q 026318 82 GQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL--- 158 (240)
Q Consensus 82 ~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqi--- 158 (240)
...+..+++|+|.+.--|-.-++. ++....++..++..|...+...+.+|+.|-..|++++......
T Consensus 3 ~e~l~qlq~Erd~ya~~lk~e~a~----------~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~ 72 (617)
T PF15070_consen 3 MESLKQLQAERDQYAQQLKEESAQ----------WQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPP 72 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 456778889999877666555544 3455556666666777777777777777777776666543321
Q ss_pred --H--------HHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHH-HHHHHhHHHHHHHHHHHHHHHhh
Q 026318 159 --I--------AMRADIDGIRSELVEARRAFEFEKKANEEQIEQK-QAMENNLISMAREIEKLRAELLN 216 (240)
Q Consensus 159 --p--------~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~-qaMEknlisMarEvEKLRaElan 216 (240)
| .|.+|++.|++|+..+-.-+..--+ +.+.+... +..|.-|...=+.++.+..+...
T Consensus 73 ~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~-~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D 140 (617)
T PF15070_consen 73 EPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVE-NNEQLSRLNQEQEERLAELEEELERLQEQQED 140 (617)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 4566666777776665554443222 22222222 33344455555555555555433
No 99
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=88.04 E-value=24 Score=33.30 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318 136 ELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (240)
Q Consensus 136 ELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (240)
.+..++..+...++..+.+...+|....+...|+.|+.-+|..|+
T Consensus 315 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~y~ 359 (444)
T TIGR03017 315 ILKQREAELREALENQKAKVLELNRQRDEMSVLQRDVENAQRAYD 359 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777778888888888888777777666543
No 100
>PF15294 Leu_zip: Leucine zipper
Probab=88.02 E-value=15 Score=34.62 Aligned_cols=118 Identities=23% Similarity=0.351 Sum_probs=70.4
Q ss_pred hhHhHHHHHhhhhhhhhhhhcch----------------------hhHHHHHHHHHHHHHHHHH--------------HH
Q 026318 92 KEAHTRELFDRGLKLEVELRASE----------------------PVRAEVVQLRAEVQKLNSS--------------RQ 135 (240)
Q Consensus 92 ~e~q~Rel~ek~~KmEAelRa~e----------------------~lk~El~Q~r~e~q~L~a~--------------RQ 135 (240)
.+.+=|+|++.+.++|..-=+.. -+..|+.-++.|.++|..- +.
T Consensus 84 selEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~ 163 (278)
T PF15294_consen 84 SELENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKS 163 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888888888875432222 2566666666666666553 33
Q ss_pred HHHHHHHHHHHHHHHHH------HhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHH
Q 026318 136 ELTTQIKGLTKDVNRLE------AENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEK 209 (240)
Q Consensus 136 ELt~qvq~ltqeL~r~~------~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEK 209 (240)
.|..+++.+..+..... ...|+++.|..-+-.++ .+|||. --+.-++.++++-|+.+--.+|=+
T Consensus 164 kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK---------~e~ek~-~~d~~~~~k~L~e~L~~~KhelL~ 233 (278)
T PF15294_consen 164 KLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALK---------SELEKA-LQDKESQQKALEETLQSCKHELLR 233 (278)
T ss_pred HHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHH---------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333221111 23344444444444443 455655 334455999999999999999999
Q ss_pred HHHHHhhhcc
Q 026318 210 LRAELLNTER 219 (240)
Q Consensus 210 LRaElanaek 219 (240)
....|..+++
T Consensus 234 ~QeqL~~aek 243 (278)
T PF15294_consen 234 VQEQLSLAEK 243 (278)
T ss_pred cchhhhcchh
Confidence 9998887765
No 101
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=87.99 E-value=30 Score=34.39 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 026318 165 IDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELL 215 (240)
Q Consensus 165 id~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaEla 215 (240)
++-+++|-+...+.++-+..+.-..++.++.=+. ++..+|.+++++.+
T Consensus 201 l~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~---~L~~~Ias~e~~aA 248 (420)
T COG4942 201 LAQLLEERKKTLAQLNSELSADQKKLEELRANES---RLKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555554 55566666664443
No 102
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=87.97 E-value=22 Score=33.23 Aligned_cols=78 Identities=19% Similarity=0.299 Sum_probs=64.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHHHHHHHhhhhhhhcchH
Q 026318 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL----IAMRADIDGIRSELVEARRAFEFEKKANEE 188 (240)
Q Consensus 113 ~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqi----p~l~aEid~lrqElqr~Raa~EyEKK~~~e 188 (240)
+..+..++.+.+..+.+|.+.-..|.+++..-++||.|.+.-++.+ |+-.+|-|.+..||+..=..| .+|=-|.+
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y-~~kfRNl~ 249 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIY-VEKFRNLD 249 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH-HHHHHhHH
Confidence 4678899999999999999999999999999999999999877766 888999999999999876544 34444444
Q ss_pred HHH
Q 026318 189 QIE 191 (240)
Q Consensus 189 ~~E 191 (240)
-+|
T Consensus 250 yLe 252 (267)
T PF10234_consen 250 YLE 252 (267)
T ss_pred HHH
Confidence 444
No 103
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=87.92 E-value=0.16 Score=51.78 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 026318 158 LIAMRADIDGIRSELVEARR 177 (240)
Q Consensus 158 ip~l~aEid~lrqElqr~Ra 177 (240)
+|.|.++...++.|+.++|.
T Consensus 259 i~~LE~en~~l~~Elk~Lr~ 278 (722)
T PF05557_consen 259 IRELEKENRRLREELKHLRQ 278 (722)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 104
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=87.69 E-value=16 Score=31.00 Aligned_cols=68 Identities=21% Similarity=0.298 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 026318 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFE 182 (240)
Q Consensus 115 ~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyE 182 (240)
.-|+|+.-+..++..+++.++.|...+..++.|-.-+....|+.-.=..|++...-.+.+.=...|-|
T Consensus 49 n~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 49 NSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443333333333333333334444443333333333333
No 105
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=87.66 E-value=40 Score=35.51 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=26.3
Q ss_pred CCCCCCCCCCCCCCCCCCccchHHHHHHHHH-HHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhh
Q 026318 18 RDGPRPVLTRGLAPMHFHPMTLEEEIEIQRR-EMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQ 83 (240)
Q Consensus 18 ~~~p~p~~~r~~~~~~p~p~~LEe~La~Q~~-EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~ 83 (240)
++++-|.-+. |+|+.. +.++..... ++.+|-.+-.+ ...--.|++++.....+++.+..
T Consensus 456 ~~~~CPvCg~---~l~~~~---~~~~~~~~~~el~~l~~~i~~-~~~~~~l~~e~~~l~~~l~~~~~ 515 (908)
T COG0419 456 AGEKCPVCGQ---ELPEEH---EKELLELYELELEELEEELSR-EKEEAELREEIEELEKELRELEE 515 (908)
T ss_pred CCCCCCCCCC---CCCcHH---HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556676554 233222 444444444 45544444442 22222335555555555544443
No 106
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=87.40 E-value=46 Score=35.91 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhh
Q 026318 39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKL 88 (240)
Q Consensus 39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i 88 (240)
.+..+..-..+++.+...-..+......+.+.+...+..+..+...+..+
T Consensus 528 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (1047)
T PRK10246 528 NQSRLDALEKEVKKLGEEGAALRGQLDALTKQLQRDESEAQSLRQEEQAL 577 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666655444544444455555555555555444444433
No 107
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.11 E-value=22 Score=38.38 Aligned_cols=83 Identities=20% Similarity=0.312 Sum_probs=41.3
Q ss_pred hHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 61 IDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQ 140 (240)
Q Consensus 61 AathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~q 140 (240)
-+-.-.|.+||.+...-+|.|+.-+-+++...--+--++-.-.-. .|-+..|..|+.+.+|.+...-+-|+-+
T Consensus 436 nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q-------~e~~isei~qlqarikE~q~kl~~l~~E 508 (1118)
T KOG1029|consen 436 NAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQ-------RELMISEIDQLQARIKELQEKLQKLAPE 508 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhH-------HHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 344445666777777777777766666666554433332222222 2344445555555555444444444444
Q ss_pred HHHHHHHHHH
Q 026318 141 IKGLTKDVNR 150 (240)
Q Consensus 141 vq~ltqeL~r 150 (240)
-|.+...|..
T Consensus 509 kq~l~~qlkq 518 (1118)
T KOG1029|consen 509 KQELNHQLKQ 518 (1118)
T ss_pred HHHHHHHHHH
Confidence 4444443333
No 108
>PF13514 AAA_27: AAA domain
Probab=86.91 E-value=49 Score=35.72 Aligned_cols=87 Identities=14% Similarity=0.221 Sum_probs=50.3
Q ss_pred HHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhhhhhHHHH
Q 026318 96 TRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELT-------------TQIKGLTKDVNRLEAENKQLIAMR 162 (240)
Q Consensus 96 ~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt-------------~qvq~ltqeL~r~~~d~qqip~l~ 162 (240)
+.+.++....+-..++....++..+.+...++..+...-..|. .-+..+...|..++...+++-.+.
T Consensus 728 ~~~~l~~l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~ 807 (1111)
T PF13514_consen 728 ALEALELLEELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQ 807 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444433333332 456777778888888778888888
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 026318 163 ADIDGIRSELVEARRAFEFE 182 (240)
Q Consensus 163 aEid~lrqElqr~Raa~EyE 182 (240)
.+++.+++++..+...++.-
T Consensus 808 ~~~~~~~~~~~~~~~~l~~~ 827 (1111)
T PF13514_consen 808 EQLEELEEELEQAEEELEEL 827 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888877776665433
No 109
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.75 E-value=42 Score=37.05 Aligned_cols=123 Identities=20% Similarity=0.305 Sum_probs=64.2
Q ss_pred hhhHhhHHHHHHHHhhHHHH--------------HHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhh----hcchhhHHHH
Q 026318 59 HAIDDNTHLQRELTASKDEI--------------HRLGQIIPKLRADKEAHTRELFDRGLKLEVEL----RASEPVRAEV 120 (240)
Q Consensus 59 RLAathvaLrqeL~aaq~El--------------~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAel----Ra~e~lk~El 120 (240)
++.++.-.++.++.-.+++| ..+-.-+.+..+++|-.+-++.-.+-.....+ +-.+.-..|.
T Consensus 738 ~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~ 817 (1174)
T KOG0933|consen 738 KLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEY 817 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544443 34444556667777777777665554333332 2233333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 026318 121 VQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKK 184 (240)
Q Consensus 121 ~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK 184 (240)
.-+..|+..|....+-+-.+.+++...+..+.+ .++.+.+.+++...+...+-+.+..+|+
T Consensus 818 e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~---e~~~l~~kv~~~~~~~~~~~~el~~~k~ 878 (1174)
T KOG0933|consen 818 ERLQLEHEELEKEISSLKQQLEQLEKQISSLKS---ELGNLEAKVDKVEKDVKKAQAELKDQKA 878 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHhHHHHHHHHHHHHHH
Confidence 444444444444444444444444444333333 3566666666666666666666666655
No 110
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=86.69 E-value=22 Score=31.41 Aligned_cols=112 Identities=21% Similarity=0.291 Sum_probs=56.8
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchh--
Q 026318 38 TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEP-- 115 (240)
Q Consensus 38 ~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~-- 115 (240)
-|.+.|..-+.+++.|..||+-|=.- -.||+-+-.+ ......-+|.+-.=..-++|.|=++..+.....++.+.
T Consensus 16 ~L~n~l~elq~~l~~l~~ENk~Lk~l--q~Rq~kAL~k--~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~kl 91 (194)
T PF15619_consen 16 ELQNELAELQRKLQELRKENKTLKQL--QKRQEKALQK--YEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKL 91 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH--HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788899999999999999877543 2333322211 11112223333333334444444444444444433321
Q ss_pred --hHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q 026318 116 --VRAEVVQLRAEVQKLNS--------SRQELTTQIKGLTKDVNRLEA 153 (240)
Q Consensus 116 --lk~El~Q~r~e~q~L~a--------~RQELt~qvq~ltqeL~r~~~ 153 (240)
.-.|+.....+++.|.. .|.+|+.++..++..++....
T Consensus 92 k~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ 139 (194)
T PF15619_consen 92 KDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEK 139 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 11244444444443322 366777666666666554433
No 111
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=85.94 E-value=43 Score=36.87 Aligned_cols=136 Identities=18% Similarity=0.282 Sum_probs=0.0
Q ss_pred HhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 026318 94 AHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELV 173 (240)
Q Consensus 94 ~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElq 173 (240)
.|+|+|.+|.--+-..=..-..==.||..++.+...|...|--++++...|.++|.+++-+.++.-+.+.+.-..--+++
T Consensus 231 ~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~a 310 (1243)
T KOG0971|consen 231 AQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTA 310 (1243)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhhhcchHHHHHHH----HHHHhHHHHHHHHHHHHHHHhhhccccccccccchhh
Q 026318 174 EARRAFEFEKKANEEQIEQKQ----AMENNLISMAREIEKLRAELLNTERRACGLGKISFFL 231 (240)
Q Consensus 174 r~Raa~EyEKK~~~e~~Eq~q----aMEknlisMarEvEKLRaElanaekRa~~~~~~g~~~ 231 (240)
-.=-.+-.+|----|..|..| +....+.+|.-++|=|++|.+|- .+-+.+..+|.+
T Consensus 311 d~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeek--G~~~~~~ss~qf 370 (1243)
T KOG0971|consen 311 DAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEK--GSDGQAASSYQF 370 (1243)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCcccchHHH
No 112
>PF12592 DUF3763: Protein of unknown function (DUF3763); InterPro: IPR022547 This domain is found in bacterial regulartory ATPases 3.6.3. from EC, and is approximately 60 amino acids in length. The domain is found C-terminal to PF07728 from PFAM. There is a single completely conserved residue F that may be functionally important. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; PDB: 3NBX_X.
Probab=85.94 E-value=4.6 Score=29.49 Aligned_cols=55 Identities=24% Similarity=0.234 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHH
Q 026318 158 LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRA 212 (240)
Q Consensus 158 ip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRa 212 (240)
-..+.++++.+.+++...|+-|.---.-++-.-+=.-.||-.|..++..++.++.
T Consensus 2 ~~e~~~qL~~~~~~l~~qR~~F~~~qPhlFI~~~wl~~IE~Sl~~l~eqL~q~~~ 56 (57)
T PF12592_consen 2 PEEALAQLDEAEHELRQQRSLFHQHQPHLFIDSEWLAAIEASLQQLAEQLEQLKQ 56 (57)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTT---TTS-HHHHHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCcCcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4578899999999999999999999998888899999999999999999998874
No 113
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=85.94 E-value=33 Score=32.71 Aligned_cols=122 Identities=18% Similarity=0.217 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHH----HHHHHhhhhhhHhhHHHHH-----------HHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhh
Q 026318 39 LEEEIEIQRREM----HRIISENRHAIDDNTHLQR-----------ELTASKDEIHRLGQIIPKLRADKEAHTRELFDRG 103 (240)
Q Consensus 39 LEe~La~Q~~Ei----qrLl~dNqRLAathvaLrq-----------eL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~ 103 (240)
+|-.|..|-..| +.|.++||||-..-.++|. ...+..+|+-++.++-.. ---+||+|-+..
T Consensus 46 ~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeq----l~kyiReLEQaN 121 (333)
T KOG1853|consen 46 IEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQ----LRKYIRELEQAN 121 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhc
Confidence 566666655544 5688999998876655543 333444444444333222 234677777777
Q ss_pred hhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 026318 104 LKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVE 174 (240)
Q Consensus 104 ~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr 174 (240)
--||--=|+..-.-.++.| +|.-+ ..+..-|..||---..-+-.+--|+.|--.|||||+-
T Consensus 122 DdLErakRati~sleDfeq------rLnqA----IErnAfLESELdEke~llesvqRLkdEardlrqelav 182 (333)
T KOG1853|consen 122 DDLERAKRATIYSLEDFEQ------RLNQA----IERNAFLESELDEKEVLLESVQRLKDEARDLRQELAV 182 (333)
T ss_pred cHHHHhhhhhhhhHHHHHH------HHHHH----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777655555444334333 22211 1233445555555555555666778888888888864
No 114
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=85.91 E-value=12 Score=36.11 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 026318 134 RQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEF 181 (240)
Q Consensus 134 RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey 181 (240)
.+-+-.+.+.+.++++.+++.+..+|....++..|..|.+-.|+.||-
T Consensus 344 ~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~ 391 (458)
T COG3206 344 LALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYET 391 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHH
Confidence 344778888899999999999999999999999999999999998874
No 115
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=85.51 E-value=18 Score=32.20 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 129 KLNSSRQELTTQIKGLTKDVNRLE 152 (240)
Q Consensus 129 ~L~a~RQELt~qvq~ltqeL~r~~ 152 (240)
++...+++|..++..+.+++..+.
T Consensus 46 ~~~~e~~~L~~e~~~l~~e~e~L~ 69 (251)
T PF11932_consen 46 QWDDEKQELLAEYRQLEREIENLE 69 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 116
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=85.42 E-value=41 Score=33.44 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=11.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhhc
Q 026318 195 AMENNLISMAREIEKLRAELLNTE 218 (240)
Q Consensus 195 aMEknlisMarEvEKLRaElanae 218 (240)
.-++.+=.....-.-|+.+|+.++
T Consensus 221 ~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 221 ADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333334444444444555555555
No 117
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=85.17 E-value=37 Score=32.67 Aligned_cols=33 Identities=0% Similarity=0.173 Sum_probs=19.8
Q ss_pred hhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhh
Q 026318 60 AIDDNTHLQRELTASKDEIHRLGQIIPKLRADK 92 (240)
Q Consensus 60 LAathvaLrqeL~aaq~El~~l~~~i~~i~ae~ 92 (240)
...+..-|.+++..++++|......+.+.+.++
T Consensus 159 ~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~ 191 (498)
T TIGR03007 159 SDSAQRFIDEQIKTYEKKLEAAENRLKAFKQEN 191 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334555666666666666666666666555443
No 118
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=84.88 E-value=6.3 Score=28.97 Aligned_cols=42 Identities=33% Similarity=0.582 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 026318 126 EVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR 177 (240)
Q Consensus 126 e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra 177 (240)
.+.+|.+.=|.|.++|..|..|+. +|++++...+.|-.|+=.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~----------~lr~~v~~ak~EAaRAN~ 45 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVN----------ALRADVQAAKEEAARANQ 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 344555555556666666666643 455555566666666543
No 119
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=84.79 E-value=4.9 Score=30.71 Aligned_cols=44 Identities=20% Similarity=0.490 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 026318 123 LRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADID 166 (240)
Q Consensus 123 ~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid 166 (240)
+..|+..|.....||+.++.....++.+.+.+.+++..+++..+
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~~~~~~ik~~~e 44 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEEQEIEEIKAQYE 44 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999888888877544
No 120
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=84.73 E-value=48 Score=33.58 Aligned_cols=121 Identities=29% Similarity=0.355 Sum_probs=77.2
Q ss_pred hhhhHhHHHHHhhhhhhhhh--hhcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------
Q 026318 90 ADKEAHTRELFDRGLKLEVE--LRAS--EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN---------- 155 (240)
Q Consensus 90 ae~e~q~Rel~ek~~KmEAe--lRa~--e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~---------- 155 (240)
-|.|-++-.|+.|+.|+|++ ++.. +-||.|..|+- +..-||=-+-|..|-|.+.++..|.
T Consensus 154 qeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~le------ntlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqp 227 (552)
T KOG2129|consen 154 QEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLE------NTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQP 227 (552)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 46677888999999999976 3333 44555554433 3445555555555555555444332
Q ss_pred ----------hhh--------HHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhH-HHHHHHHHHHHHHHhh
Q 026318 156 ----------KQL--------IAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNL-ISMAREIEKLRAELLN 216 (240)
Q Consensus 156 ----------qqi--------p~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknl-isMarEvEKLRaElan 216 (240)
-.+ .+++.=||.|+-|+-|+|+-+--=.|-+.+.+-|..+=|+.+ -.-+|+-+||--|+..
T Consensus 228 vs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~er 307 (552)
T KOG2129|consen 228 VSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELER 307 (552)
T ss_pred ccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 222 246777899999999999988887888888887777766644 2334555555555544
No 121
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=84.63 E-value=20 Score=29.19 Aligned_cols=39 Identities=13% Similarity=0.297 Sum_probs=19.7
Q ss_pred HHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhh
Q 026318 49 EMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPK 87 (240)
Q Consensus 49 EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~ 87 (240)
|+..|-.+.+++-..-......+..++.||.........
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~ 42 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQE 42 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444455555555566665555444443
No 122
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=84.62 E-value=28 Score=30.76 Aligned_cols=125 Identities=18% Similarity=0.300 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHH
Q 026318 42 EIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVV 121 (240)
Q Consensus 42 ~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~ 121 (240)
-|..-..||+.|-...++.=....++.+.+-....||.++...+..++ .|++. -.|-..+.+-..|.
T Consensus 62 ll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~--------~L~~d-----knL~eReeL~~kL~ 128 (194)
T PF15619_consen 62 LLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLK--------KLSED-----KNLAEREELQRKLS 128 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHc-----CCchhHHHHHHHHH
Confidence 344555666666666666666666666666666666666555444322 11111 12223455666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 026318 122 QLRAEVQKLNSSRQELTTQIKGLTKDVNRL-EAENKQLIAMRADIDGIRSELVEARRAF 179 (240)
Q Consensus 122 Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~-~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (240)
.+...++.-...=++|.-++.-.++-+.+. .++...+-.+..++..+..|+.++..-+
T Consensus 129 ~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 129 QLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666667777888777777664 5789999999999999999999998766
No 123
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=84.22 E-value=26 Score=36.58 Aligned_cols=173 Identities=19% Similarity=0.270 Sum_probs=97.8
Q ss_pred HHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhH--------hHHH-------HHhhhhhhhhhhh------
Q 026318 53 IISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEA--------HTRE-------LFDRGLKLEVELR------ 111 (240)
Q Consensus 53 Ll~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~--------q~Re-------l~ek~~KmEAelR------ 111 (240)
|..-+-..-+||. |.-|+||=.=-+.....+..+..+-.- .+-. |.+-+.|.+++-+
T Consensus 331 ~r~~~~~~~ddH~--RDALAAA~kAY~~yk~kl~~vEr~~~~~g~~~d~~rika~VIrG~~l~eal~~~~e~~~p~e~~~ 408 (652)
T COG2433 331 LRTLKISVSDDHE--RDALAAAYKAYLAYKPKLEKVERKLPELGIWKDVERIKALVIRGYPLAEALSKVKEEERPREKEG 408 (652)
T ss_pred HhhcCCCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHeecCCcHHHHHHHHHhhhccccccc
Confidence 3444445555664 667777765555554444443322111 1111 2233333333333
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHH-
Q 026318 112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQI- 190 (240)
Q Consensus 112 a~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~- 190 (240)
..+..+-|+.+...++.++...=+.|..+++.|..++. .++.||+.|+.++.++|.-++.+...+-+.-
T Consensus 409 ~~~~e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~e----------e~k~eie~L~~~l~~~~r~~~~~~~~~rei~~ 478 (652)
T COG2433 409 TEEEERREITVYEKRIKKLEETVERLEEENSELKRELE----------ELKREIEKLESELERFRREVRDKVRKDREIRA 478 (652)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 22344456666667777766666666666666666544 5667888888888888777775544433321
Q ss_pred --HHHHHHHHhHHHHHHHHHHHHHHHhhhcc-cc---ccccccchhhhhhhhh
Q 026318 191 --EQKQAMENNLISMAREIEKLRAELLNTER-RA---CGLGKISFFLGALTWS 237 (240)
Q Consensus 191 --Eq~qaMEknlisMarEvEKLRaElanaek-Ra---~~~~~~g~~~~~~~~~ 237 (240)
+-.-.++++|..=.++||.|..+|+...+ +. .|-|+.--.+-.+||.
T Consensus 479 ~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~lE~sG~g~pvk~ve~~t~~ 531 (652)
T COG2433 479 RDRRIERLEKELEEKKKRVEELERKLAELRKMRKLELSGKGTPVKVVEKLTLE 531 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcceehhhhhhHH
Confidence 23456888998889999999998877652 11 2223334455566665
No 124
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=84.14 E-value=31 Score=31.00 Aligned_cols=97 Identities=16% Similarity=0.186 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhc----chHHHHH
Q 026318 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKA----NEEQIEQ 192 (240)
Q Consensus 117 k~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~----~~e~~Eq 192 (240)
-.|++++-++++.|..--|.|....-.+..|+.-+.+-+ .+|.|..+|..|+.|.-.-|--++.=|.| ..+-.+|
T Consensus 78 ~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L-t~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~ 156 (201)
T KOG4603|consen 78 DEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL-TTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQ 156 (201)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 368889999999988888888887777777776555544 48899999999998877666666555544 3566788
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q 026318 193 KQAMENNLISMAREIEKLRAEL 214 (240)
Q Consensus 193 ~qaMEknlisMarEvEKLRaEl 214 (240)
...|=...++|-|....+=-|+
T Consensus 157 v~~~y~~~~~~wrk~krmf~ei 178 (201)
T KOG4603|consen 157 VYREYQKYCKEWRKRKRMFREI 178 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899998887766655
No 125
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=83.68 E-value=42 Score=32.03 Aligned_cols=149 Identities=23% Similarity=0.280 Sum_probs=89.8
Q ss_pred hhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHH----HHH
Q 026318 56 ENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQ----KLN 131 (240)
Q Consensus 56 dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q----~L~ 131 (240)
+-+---.-|..++|-...+++|+.-...--+.+.+|-|.|+-.+-.+..+++++ .++++.|.. ++.
T Consensus 14 E~~ywk~l~~~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~----------nqrl~~E~e~~Kek~e 83 (333)
T KOG1853|consen 14 EDQYWKLLHHEYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETR----------NQRLTTEQERNKEKQE 83 (333)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 334445568899999999999999999888999999999988888888888864 344444332 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHH--HHHHHhH---------
Q 026318 132 SSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK--QAMENNL--------- 200 (240)
Q Consensus 132 a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~--qaMEknl--------- 200 (240)
..|-+.-.++-.|..||...++-..|+-.-.-|++.----|-++..+-.|- .+-+||. |++|+|-
T Consensus 84 ~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~s----leDfeqrLnqAIErnAfLESELdEk 159 (333)
T KOG1853|consen 84 DQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYS----LEDFEQRLNQAIERNAFLESELDEK 159 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhh----HHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344444445555555555555544444444444444444444444443331 2334443 6677663
Q ss_pred ----HHH---HHHHHHHHHHHhhhc
Q 026318 201 ----ISM---AREIEKLRAELLNTE 218 (240)
Q Consensus 201 ----isM---arEvEKLRaElanae 218 (240)
.+| --|.-.||-||+-..
T Consensus 160 e~llesvqRLkdEardlrqelavr~ 184 (333)
T KOG1853|consen 160 EVLLESVQRLKDEARDLRQELAVRT 184 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 235555666676544
No 126
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=83.66 E-value=1.2 Score=47.33 Aligned_cols=45 Identities=22% Similarity=0.364 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH--------H-------hhhccccccccccchhhhhhh
Q 026318 189 QIEQKQAMENNLISMAREIEKLRAE--------L-------LNTERRACGLGKISFFLGALT 235 (240)
Q Consensus 189 ~~Eq~qaMEknlisMarEvEKLRaE--------l-------anaekRa~~~~~~g~~~~~~~ 235 (240)
..||.+.+.=.+|++.--.|.+|+- | -|+-.|- +++.||++..||
T Consensus 790 fse~vnniKP~i~avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSrN--a~afgF~is~L~ 849 (1102)
T KOG1924|consen 790 FSEQVNNIKPDIVAVTAACEELRKSESFSKLLELVLLVGNYMNSGSRN--AQAFGFNISFLC 849 (1102)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccccc--chhhccchHHHH
Confidence 3477778888888888888887763 1 2333332 455588887776
No 127
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=82.78 E-value=27 Score=37.08 Aligned_cols=76 Identities=20% Similarity=0.361 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHH------HHHHHHHH
Q 026318 137 LTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLIS------MAREIEKL 210 (240)
Q Consensus 137 Lt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlis------MarEvEKL 210 (240)
|+.++..|.+|+++--++.-.-|.|+.-+|-|+.+. ++.+.- |.|.++.-+ .+..-|.++. |-.++|-+
T Consensus 509 L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~-~~~~~s--~g~~~a~~L--k~ei~kki~e~~~~~~~kek~ea~ 583 (762)
T PLN03229 509 LMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFS-RAKALS--EKKSKAEKL--KAEINKKFKEVMDRPEIKEKMEAL 583 (762)
T ss_pred HHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHH-Hhhhhc--ccchhhhhh--hHHHHHHHHHhcccHHHHHHHHHH
Confidence 777899999999999999999999999999998887 444443 323233333 4567788888 88889989
Q ss_pred HHHHhhh
Q 026318 211 RAELLNT 217 (240)
Q Consensus 211 RaElana 217 (240)
.||+.+.
T Consensus 584 ~aev~~~ 590 (762)
T PLN03229 584 KAEVASS 590 (762)
T ss_pred HHHHHhc
Confidence 8888873
No 128
>PRK01156 chromosome segregation protein; Provisional
Probab=82.35 E-value=67 Score=33.47 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHH
Q 026318 143 GLTKDVNRLEAENKQLIAMRADID 166 (240)
Q Consensus 143 ~ltqeL~r~~~d~qqip~l~aEid 166 (240)
.+.++|.....+...+-....+++
T Consensus 309 ~l~~~l~~l~~~l~~~e~~~~~~e 332 (895)
T PRK01156 309 NKKQILSNIDAEINKYHAIIKKLS 332 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 129
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=81.84 E-value=40 Score=31.31 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=30.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhh-------hh-cchHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 026318 155 NKQLIAMRADIDGIRSELVEARRAFEFE-------KK-ANEEQIEQKQAMENNLISMAREIEKLRAELL 215 (240)
Q Consensus 155 ~qqip~l~aEid~lrqElqr~Raa~EyE-------KK-~~~e~~Eq~qaMEknlisMarEvEKLRaEla 215 (240)
.-++-.++++++.++..+...+.-+.-. +. .+.++.-..+.=++.|-+...-.+..|.+.+
T Consensus 241 ~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~~ 309 (362)
T TIGR01010 241 NPQVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRVEAD 309 (362)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666677777666666544432110 00 1112222233334555566666777776643
No 130
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=81.52 E-value=15 Score=34.49 Aligned_cols=129 Identities=22% Similarity=0.225 Sum_probs=63.1
Q ss_pred hhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 026318 91 DKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRS 170 (240)
Q Consensus 91 e~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrq 170 (240)
.+--++|..+--+...|..|. +.|+--..+..+|++|... +--+.++..|.+||.++.+++. .--|+|.++..
T Consensus 121 ~~~d~yR~~LK~IR~~E~sl~---p~R~~r~~l~d~I~kLk~k-~P~s~kl~~LeqELvraEae~l---vaEAqL~n~kR 193 (271)
T PF13805_consen 121 DRLDQYRIHLKSIRNREESLQ---PSRDRRRKLQDEIAKLKYK-DPQSPKLVVLEQELVRAEAENL---VAEAQLSNIKR 193 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH--TTTTTHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh---HHHHHhHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHhh---HHHHHHHHhhH
Confidence 445556666666666665544 4455555556666666543 2235566667777666665554 22245666665
Q ss_pred HHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccccccc--chhhhhhhhhh
Q 026318 171 ELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGLGKI--SFFLGALTWSI 238 (240)
Q Consensus 171 Elqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaElanaekRa~~~~~~--g~~~~~~~~~~ 238 (240)
+ ..|.+|.+.=++-.|.-| +++-+|+=--.|=.+| +.-+..+|.. -|.++.-|=.|
T Consensus 194 ~--~lKEa~~~~f~Al~E~aE-------K~~Ila~~gk~Ll~ll---dd~pv~PG~~r~~Y~g~~~t~qI 251 (271)
T PF13805_consen 194 Q--KLKEAYSLKFDALIERAE-------KQAILAEYGKRLLELL---DDTPVVPGDTRPPYDGYEQTRQI 251 (271)
T ss_dssp H--HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTTS---------TTS-------HHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhc---cCCCCCCCCCCCCCCChhHHHHH
Confidence 4 566677766665555444 3444444333333333 2223333433 66666555444
No 131
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=81.47 E-value=49 Score=31.36 Aligned_cols=34 Identities=26% Similarity=0.283 Sum_probs=20.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHh-hhccccccccc
Q 026318 193 KQAMENNLISMAREIEKLRAELL-NTERRACGLGK 226 (240)
Q Consensus 193 ~qaMEknlisMarEvEKLRaEla-naekRa~~~~~ 226 (240)
....+.++-....++.+++..+. +..-+|-..|.
T Consensus 229 ~~~~~~~l~~~~~~l~~~~~~l~~~~~i~AP~dG~ 263 (421)
T TIGR03794 229 LETVEARIKEARYEIEELENKLNLNTRIVSQHSGR 263 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCeEEcCCCeE
Confidence 34445566666777777777776 35555544443
No 132
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=81.18 E-value=35 Score=29.46 Aligned_cols=119 Identities=13% Similarity=0.175 Sum_probs=78.3
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhh-hhhhhhhhhHhHHHHHhhhhhhhhhhh
Q 026318 33 HFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQI-IPKLRADKEAHTRELFDRGLKLEVELR 111 (240)
Q Consensus 33 ~p~p~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~-i~~i~ae~e~q~Rel~ek~~KmEAelR 111 (240)
||.-.+|++|=..-..++..--..+.....-.-...++|..|+.|.+.+..- ..++.+|-+ .+..++|++|+
T Consensus 33 ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~-------~~~~~~ea~L~ 105 (155)
T PRK06569 33 PKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFL-------IKKKNLEQDLK 105 (155)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 4455677777666666666555566666666667777888888887777644 666666555 45677788877
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 026318 112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIR 169 (240)
Q Consensus 112 a~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lr 169 (240)
. .+..|+.-.-..+. .-|-+.+.++-+|+.++. .++.-.+|.++-|+
T Consensus 106 ~--~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~i~------~k~~~~~~~~~~~~ 152 (155)
T PRK06569 106 N--SINQNIEDINLAAK---QFRTNKSEAIIKLAVNII------EKIAGTKADMNLLQ 152 (155)
T ss_pred H--HHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHH------HHHhCccccHHHHh
Confidence 5 45566655555555 445667777777887776 55666666666554
No 133
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=81.18 E-value=62 Score=32.29 Aligned_cols=63 Identities=17% Similarity=0.358 Sum_probs=34.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 026318 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEA 175 (240)
Q Consensus 113 ~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~ 175 (240)
.+.+...+..++.-..|......++....+.+.++|.........+..|..+++.++.++..+
T Consensus 303 L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~ 365 (563)
T TIGR00634 303 LNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKA 365 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555544555555556666666666666655555555555555555555555444
No 134
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.84 E-value=67 Score=33.69 Aligned_cols=126 Identities=20% Similarity=0.365 Sum_probs=0.0
Q ss_pred HHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhh------------------hhhHhHHHHHhhhhhhhhhhhcch
Q 026318 53 IISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRA------------------DKEAHTRELFDRGLKLEVELRASE 114 (240)
Q Consensus 53 Ll~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~a------------------e~e~q~Rel~ek~~KmEAelRa~e 114 (240)
||.+-.-|------|.-++..+++||..++.+.+..++ |+-..=-..+.|+.+||+||+
T Consensus 41 lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLK--- 117 (772)
T KOG0999|consen 41 LLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELK--- 117 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHH---
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------------------hhhHHHHH---HHH
Q 026318 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN-------------------------KQLIAMRA---DID 166 (240)
Q Consensus 115 ~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~-------------------------qqip~l~a---Eid 166 (240)
-++.||--++.|-.+|...-+++-.--+.+.-+--|.++|. +|+..|+. |-+
T Consensus 118 q~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyE 197 (772)
T KOG0999|consen 118 QLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYE 197 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhh
Q ss_pred HHHHHHHHHHHhhhh
Q 026318 167 GIRSELVEARRAFEF 181 (240)
Q Consensus 167 ~lrqElqr~Raa~Ey 181 (240)
++++|+.|+--.+||
T Consensus 198 glkheikRleEe~el 212 (772)
T KOG0999|consen 198 GLKHEIKRLEEETEL 212 (772)
T ss_pred HHHHHHHHHHHHHHH
No 135
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=80.84 E-value=38 Score=29.67 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=5.6
Q ss_pred HHHHHhhHHHHHHHh
Q 026318 68 QRELTASKDEIHRLG 82 (240)
Q Consensus 68 rqeL~aaq~El~~l~ 82 (240)
+.+|..++.+...+.
T Consensus 26 ~~~l~~~~~~~~~l~ 40 (302)
T PF10186_consen 26 RSELQQLKEENEELR 40 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 136
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=80.57 E-value=30 Score=28.36 Aligned_cols=88 Identities=15% Similarity=0.326 Sum_probs=45.4
Q ss_pred HHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHH
Q 026318 50 MHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQK 129 (240)
Q Consensus 50 iqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~ 129 (240)
|-.|+..-++-...+-.|-..+.....|+.++...+..++..-+ ....|+..+..+...
T Consensus 40 i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~---------------------~~ere~~~~~~~~~~ 98 (151)
T PF11559_consen 40 IYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLE---------------------ELERELASAEEKERQ 98 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555444443332111 233444444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026318 130 LNSSRQELTTQIKGLTKDVNRLEAENKQL 158 (240)
Q Consensus 130 L~a~RQELt~qvq~ltqeL~r~~~d~qqi 158 (240)
|...-..+...+.....|++|.+..++++
T Consensus 99 l~~~~~~~~~~~k~~kee~~klk~~~~~~ 127 (151)
T PF11559_consen 99 LQKQLKSLEAKLKQEKEELQKLKNQLQQR 127 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666666666666555544
No 137
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=79.92 E-value=55 Score=34.05 Aligned_cols=105 Identities=22% Similarity=0.254 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hhhHHHHHHHHHHHHHHHHHHHhhhhhhh-
Q 026318 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN---------KQLIAMRADIDGIRSELVEARRAFEFEKK- 184 (240)
Q Consensus 115 ~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~---------qqip~l~aEid~lrqElqr~Raa~EyEKK- 184 (240)
.-++++.|.-++...|....|.|+.+++.+.+++.+.-++. -.+-.++|.+++|+.|.|++.-+++--|.
T Consensus 308 e~~a~v~q~~~e~~~l~~eaq~l~~~L~~~~~e~~~~~~~~s~~~al~~ele~~~l~A~l~~L~se~q~L~~~~~~r~e~ 387 (632)
T PF14817_consen 308 EQWAHVQQFLAEEDALNKEAQALSQRLQRLLEEIERRLSGSSEREALALELEVAGLKASLNALRSECQRLKEAAAERQEA 387 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777778888888888888888888888877765442 34567889999999999999988875443
Q ss_pred ----------------cchHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcc
Q 026318 185 ----------------ANEEQIEQKQAMENNLISMAREIEKLRAELLNTER 219 (240)
Q Consensus 185 ----------------~~~e~~Eq~qaMEknlisMarEvEKLRaElanaek 219 (240)
.-.+.-+|.++..|+=.+.+..+.+..+|+-+.-.
T Consensus 388 ~~~Lq~K~q~I~~frqlv~e~QeqIr~LiK~Nsaakt~L~q~~~E~~~~~~ 438 (632)
T PF14817_consen 388 LRSLQAKWQRILDFRQLVSEKQEQIRALIKGNSAAKTQLEQSPAEAQEFVQ 438 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhChHHHHHHHh
Confidence 23455677778888777778888888888766443
No 138
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=79.87 E-value=37 Score=28.88 Aligned_cols=73 Identities=25% Similarity=0.315 Sum_probs=39.7
Q ss_pred HHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 026318 99 LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR 177 (240)
Q Consensus 99 l~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra 177 (240)
|-+++..||+||..++ .+...+-.|+.+-.+.-..|..++..+|+++.++..|+ ..++.|.+.|-++++.-..
T Consensus 22 le~~v~~LEreLe~~q---~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL---~~l~sEk~~L~k~lq~~q~ 94 (140)
T PF10473_consen 22 LEDHVESLERELEMSQ---ENKECLILDAENSKAEIETLEEELEELTSELNQLELEL---DTLRSEKENLDKELQKKQE 94 (140)
T ss_pred HHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4567777777775442 23333334444444444445555666666666555553 3455666666666665443
No 139
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=79.86 E-value=46 Score=29.98 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHH
Q 026318 39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKD 76 (240)
Q Consensus 39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~ 76 (240)
|.+.-+.-++.|...---|.+|+.....|+..+-.+||
T Consensus 20 L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qq 57 (193)
T PF14662_consen 20 LADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQ 57 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555666666667777777777777777776653
No 140
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=79.83 E-value=8.5 Score=40.20 Aligned_cols=52 Identities=21% Similarity=0.320 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318 119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (240)
Q Consensus 119 El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (240)
=+.-|+-|.-+|.+-||||.+++..+++- |.+++.+|..-++|+.++...||
T Consensus 87 I~~sVs~EL~ele~krqel~seI~~~n~k----------iEelk~~i~~~q~eL~~Lk~~ie 138 (907)
T KOG2264|consen 87 ILASVSLELTELEVKRQELNSEIEEINTK----------IEELKRLIPQKQLELSALKGEIE 138 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH----------HHHHHHHHHHhHHHHHHHHhHHH
Confidence 33344445555667777777777666544 44555555555555555544444
No 141
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=79.80 E-value=51 Score=35.39 Aligned_cols=147 Identities=24% Similarity=0.333 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHH------------HHHhhhhhh
Q 026318 39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTR------------ELFDRGLKL 106 (240)
Q Consensus 39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~R------------el~ek~~Km 106 (240)
||+.|+-+.+++..+..-|. .|..-|.-+..+|+-......-..+|.+.+=| ...++.+||
T Consensus 96 lE~~Lankda~lrq~eekn~-------slqerLelaE~~l~qs~rae~lpeveael~qr~~al~~aee~~~~~eer~~kl 168 (916)
T KOG0249|consen 96 LENELANKDADLRQNEEKNR-------SLQERLELAEPKLQQSLRAETLPEVEAELAQRNAALTKAEEHSGNIEERTRKL 168 (916)
T ss_pred HHHHHhCcchhhchhHHhhh-------hhhHHHHHhhHhhHhHHhhhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHH
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 026318 107 EVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKAN 186 (240)
Q Consensus 107 EAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~ 186 (240)
+.++ +-+.+||+-++---.-=...-+-|+..|- .+++--.+..-+-..+++.|-+|+--.+.-++
T Consensus 169 ~~~~---qe~naeL~rarqreemneeh~~rlsdtvd------ErlqlhlkermaAle~kn~L~~e~~s~kk~l~------ 233 (916)
T KOG0249|consen 169 EEQL---EELNAELQRARQREKMNEEHNKRLSDTVD------ERLQLHLKERMAALEDKNRLEQELESVKKQLE------ 233 (916)
T ss_pred HHHH---HHHHHHHHHHHHHHHhhhhhccccccccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 026318 187 EEQIEQKQAMENNLISMAREIEKLRAELL 215 (240)
Q Consensus 187 ~e~~Eq~qaMEknlisMarEvEKLRaEla 215 (240)
+|.+.=-.....+|+||.|+.
T Consensus 234 --------~~~~~k~rl~~d~E~Lr~e~~ 254 (916)
T KOG0249|consen 234 --------EMRHDKDKLRTDIEDLRGELD 254 (916)
T ss_pred --------HHHHHHHHHhhhHHHHHHHHH
No 142
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=79.80 E-value=73 Score=32.25 Aligned_cols=87 Identities=22% Similarity=0.340 Sum_probs=57.3
Q ss_pred hhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------
Q 026318 101 DRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEA--------------------------- 153 (240)
Q Consensus 101 ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~--------------------------- 153 (240)
+|.+..=+=+++.|+=+.-|.|-.-|-|.|.+.-|||.+.+. .|+.+++.
T Consensus 439 QKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLa---aEItrLRtlltgdGgGtGsplaqgkdayELEVLLR 515 (593)
T KOG4807|consen 439 QKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLA---AEITRLRTLLTGDGGGTGSPLAQGKDAYELEVLLR 515 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHH---HHHHHHHHHhccCCCCCCCccccCcchhhHHHHHH
Confidence 555555556677888888899999999999999999987643 34444432
Q ss_pred -hhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHH
Q 026318 154 -ENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQI 190 (240)
Q Consensus 154 -d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~ 190 (240)
.-.-|--|+.||..|+-|||-+-.---|=...|-+.|
T Consensus 516 VKEsEiQYLKqEissLkDELQtalrDKkyaSdKYkDiY 553 (593)
T KOG4807|consen 516 VKESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIY 553 (593)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHH
Confidence 1123445677777777777766544445444555544
No 143
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=79.73 E-value=18 Score=28.77 Aligned_cols=64 Identities=13% Similarity=0.275 Sum_probs=48.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 026318 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEF 181 (240)
Q Consensus 114 e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey 181 (240)
-.+..+|..++.+.-.+...-++|+.+++.++++...-.. -|.+..+|+.++.+++..|.-..-
T Consensus 13 ~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~----~~~~~~~l~~~~~~lk~~r~~~~v 76 (106)
T PF05837_consen 13 RSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE----DEELSEKLEKLEKELKKSRQRWRV 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----chHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777888888888888888877654443 578888999999988887765543
No 144
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=79.73 E-value=9.7 Score=33.25 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHH
Q 026318 156 KQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK 193 (240)
Q Consensus 156 qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~ 193 (240)
..=-.+.++++.|+.++..+.+-++-=++...+.++++
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~ 140 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKYSENDPEKIEKL 140 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 33445666777777777777666664444555544443
No 145
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=79.69 E-value=56 Score=30.85 Aligned_cols=33 Identities=12% Similarity=0.268 Sum_probs=21.1
Q ss_pred hhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhh
Q 026318 60 AIDDNTHLQRELTASKDEIHRLGQIIPKLRADK 92 (240)
Q Consensus 60 LAathvaLrqeL~aaq~El~~l~~~i~~i~ae~ 92 (240)
...+..-|..++...+++|......+.+.+.++
T Consensus 169 ~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 201 (444)
T TIGR03017 169 AQKAALWFVQQIAALREDLARAQSKLSAYQQEK 201 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344556666777777777776666666666654
No 146
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=79.59 E-value=1.1e+02 Score=34.10 Aligned_cols=108 Identities=19% Similarity=0.271 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHhhh-------hhhHhhHHHHHHHHhhHHHHHHHhhhhhhhh---hhhhHhHHHHHhhhhhhhhhh
Q 026318 41 EEIEIQRREMHRIISENR-------HAIDDNTHLQRELTASKDEIHRLGQIIPKLR---ADKEAHTRELFDRGLKLEVEL 110 (240)
Q Consensus 41 e~La~Q~~EiqrLl~dNq-------RLAathvaLrqeL~aaq~El~~l~~~i~~i~---ae~e~q~Rel~ek~~KmEAel 110 (240)
..|..+..+|..|.++=| -+-..|-.|++++...+.|.+++...+..+. .+=....+.+-+...-+|+|+
T Consensus 692 ~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el 771 (1200)
T KOG0964|consen 692 NEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESEL 771 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 334445455555554444 3456788888888888888887765544332 222344455556666666655
Q ss_pred hc-------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 111 RA-------------SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDV 148 (240)
Q Consensus 111 Ra-------------~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL 148 (240)
-+ ++.+..|+.+++-+...+...|-++.+..-.++-.|
T Consensus 772 ~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l 822 (1200)
T KOG0964|consen 772 GSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANL 822 (1200)
T ss_pred hHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 345556666666665556666666555555444443
No 147
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=79.58 E-value=0.58 Score=47.70 Aligned_cols=117 Identities=18% Similarity=0.237 Sum_probs=0.0
Q ss_pred hhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhh---------------hhHHH
Q 026318 103 GLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLT------KDVNRLEAENK---------------QLIAM 161 (240)
Q Consensus 103 ~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~lt------qeL~r~~~d~q---------------qip~l 161 (240)
...|+.-|...+.++.++..++.+.+.|...+..-++=.+... .+|.+.-...+ .+-.+
T Consensus 290 ~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l 369 (722)
T PF05557_consen 290 KRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELREL 369 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3444444555556666666666666666666655444333311 11211111111 12234
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcc
Q 026318 162 RADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTER 219 (240)
Q Consensus 162 ~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaElanaek 219 (240)
...++.|..|+..+..-++--+.....+-....-+|+-.+-..+|++-||+-|.+.++
T Consensus 370 ~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~ 427 (722)
T PF05557_consen 370 EEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDK 427 (722)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4445555555555555555444444444445567899999999999999999988664
No 148
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=79.51 E-value=36 Score=28.55 Aligned_cols=99 Identities=26% Similarity=0.352 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHHhhhhhhhcch
Q 026318 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKG---LTKDVNRLEAENKQ----LIAMRADIDGIRSELVEARRAFEFEKKANE 187 (240)
Q Consensus 115 ~lk~El~Q~r~e~q~L~a~RQELt~qvq~---ltqeL~r~~~d~qq----ip~l~aEid~lrqElqr~Raa~EyEKK~~~ 187 (240)
..-+.++++..|+.+....||.|..|++. ...||...-.|+.- -|.| ++||+-.+|+.++ | ..
T Consensus 9 e~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvL------vkqel~EAr~nV~--k--Rl 78 (120)
T KOG3478|consen 9 EEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVL------VKQELEEARTNVG--K--RL 78 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchh------hHHHHHHHHhhHH--H--HH
Confidence 34456778888999999999999999875 45677777766532 2444 5788888888764 1 22
Q ss_pred HHH-HHHHHHHHhHHHHHHHHHHHHHHHhhhcccccc
Q 026318 188 EQI-EQKQAMENNLISMAREIEKLRAELLNTERRACG 223 (240)
Q Consensus 188 e~~-Eq~qaMEknlisMarEvEKLRaElanaekRa~~ 223 (240)
|.. --.+-.|+++-.+-+|.+|.|..+++...-+..
T Consensus 79 efI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q~ 115 (120)
T KOG3478|consen 79 EFISKEIKRLENQIRDSQEEFEKQREAVIKLQQAAQP 115 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 221 246778899999999999999999998765543
No 149
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=79.48 E-value=13 Score=31.60 Aligned_cols=62 Identities=21% Similarity=0.359 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 026318 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRA 178 (240)
Q Consensus 117 k~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa 178 (240)
..++....+++.++...+..|.+|+....+.|..++..+.-+..|+++|+.|+.++...-..
T Consensus 12 gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~ 73 (155)
T PF06810_consen 12 GKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEE 73 (155)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34555567778888899999999999999999999998889999999999999988654433
No 150
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.40 E-value=1.2e+02 Score=34.32 Aligned_cols=160 Identities=16% Similarity=0.263 Sum_probs=76.0
Q ss_pred HHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHH
Q 026318 49 EMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQ 128 (240)
Q Consensus 49 EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q 128 (240)
|+.....++++....+ .-|+......+...+..+.+++.+=+...-.+.+++.++|.+| .+....+.+++++++
T Consensus 430 e~e~~pe~~~~~i~~~---~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel---~~~~~~~n~~~~e~~ 503 (1293)
T KOG0996|consen 430 ELEKAPEKARIEIQKC---QTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKEL---MPLLKQVNEARSELD 503 (1293)
T ss_pred HHHhCchhhHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3444444444444333 2233333444444444444444444444444555555555554 244444555555544
Q ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHH----hhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHH
Q 026318 129 KLNSSR-------QELTTQIKGLTKDVNRLEA----ENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAME 197 (240)
Q Consensus 129 ~L~a~R-------QELt~qvq~ltqeL~r~~~----d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaME 197 (240)
-..+.- ..++.+|-.+..-|..... +.--+..++.+|+.+.+|+..+..-++-=+ .-.+.+-
T Consensus 504 vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~-------~e~~~~~ 576 (1293)
T KOG0996|consen 504 VAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLR-------KEERNLK 576 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHH-------HHHHHHH
Confidence 444444 4444444444444444222 223355566666666666655544333221 1223344
Q ss_pred HhHHHHHHHHHHHHHHHhhhcccc
Q 026318 198 NNLISMAREIEKLRAELLNTERRA 221 (240)
Q Consensus 198 knlisMarEvEKLRaElanaekRa 221 (240)
+++-..-.+|+-++.-+.....|.
T Consensus 577 ~~~~~~rqrveE~ks~~~~~~s~~ 600 (1293)
T KOG0996|consen 577 SQLNKLRQRVEEAKSSLSSSRSRN 600 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Confidence 455556667777776555554443
No 151
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=79.38 E-value=61 Score=34.30 Aligned_cols=53 Identities=26% Similarity=0.399 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcchHHHHHHH-----HHHHhHHHHHHHHHH---HHHHHhh
Q 026318 163 ADIDGIRSELVEARRAFEFEKKANEEQIEQKQ-----AMENNLISMAREIEK---LRAELLN 216 (240)
Q Consensus 163 aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~q-----aMEknlisMarEvEK---LRaElan 216 (240)
.|.|+|++|+.|+---+++=+.---| ..-.+ -||.=|-++-.|=|. ||-||..
T Consensus 121 vefE~~Khei~rl~Ee~~~l~~qlee-~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~ 181 (717)
T PF09730_consen 121 VEFEGLKHEIKRLEEEIELLNSQLEE-AARLKEIAEKQLEEALESLKSEREQKNALRKELDQ 181 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777777766555553322212 12222 266677777777664 7777755
No 152
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=79.15 E-value=35 Score=32.05 Aligned_cols=70 Identities=19% Similarity=0.336 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 026318 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKK 184 (240)
Q Consensus 115 ~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK 184 (240)
.|-.=...+-.|..++...-..+.-+...+.+|...++++..+...++.-+++|+.|+|+--..+--|-+
T Consensus 26 ~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~ 95 (309)
T PF09728_consen 26 ALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESK 95 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444455555555556667777888888888888888889999999999999987766655444
No 153
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=79.09 E-value=80 Score=32.32 Aligned_cols=27 Identities=7% Similarity=0.101 Sum_probs=17.7
Q ss_pred hhhhHhhHHHHHHHHhhHHHHHHHhhh
Q 026318 58 RHAIDDNTHLQRELTASKDEIHRLGQI 84 (240)
Q Consensus 58 qRLAathvaLrqeL~aaq~El~~l~~~ 84 (240)
+-|...-..|+++|..++.++......
T Consensus 197 ~~L~~ql~~l~~~l~~aE~~l~~fk~~ 223 (754)
T TIGR01005 197 DFLAPEIADLSKQSRDAEAEVAAYRAQ 223 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666777777777777766543
No 154
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=78.97 E-value=72 Score=31.70 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 026318 158 LIAMRADIDGIRSELVEARRAF 179 (240)
Q Consensus 158 ip~l~aEid~lrqElqr~Raa~ 179 (240)
+|.|+.|.+.++.|++.++..+
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi 297 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQI 297 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888887776
No 155
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=78.88 E-value=19 Score=30.09 Aligned_cols=65 Identities=17% Similarity=0.344 Sum_probs=47.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHHhh
Q 026318 112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENK----QLIAMRADIDGIRSELVEARRAF 179 (240)
Q Consensus 112 a~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~q----qip~l~aEid~lrqElqr~Raa~ 179 (240)
|...+-+-|.|+.. .|.+.|.+|+.+++.+..-|.....=.+ ++..++.+++.++.++.....++
T Consensus 44 A~~~v~kql~~vs~---~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V 112 (126)
T PF07889_consen 44 AVASVSKQLEQVSE---SLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMV 112 (126)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 55678888999988 8999999999999999888776654333 45566666666666665555443
No 156
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=78.76 E-value=77 Score=31.97 Aligned_cols=86 Identities=22% Similarity=0.349 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhh-----hHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHH
Q 026318 127 VQKLNSSRQELTTQIKGLTKDVNRLEAE-----NKQ-----LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAM 196 (240)
Q Consensus 127 ~q~L~a~RQELt~qvq~ltqeL~r~~~d-----~qq-----ip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaM 196 (240)
...|...++.|+.+.+.|..++=..++. +++ +--++..|++.++.+. ..+..+.+.+..+-+|.+.|
T Consensus 101 ~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~---~~~~~~~~~~~~L~~qi~~L 177 (475)
T PRK10361 101 IRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQ---DSFGKEAQERHTLAHEIRNL 177 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888888887765443332 111 3445555555555444 33445778888999998888
Q ss_pred HHhHHHHHHHHHHHHHHHh
Q 026318 197 ENNLISMAREIEKLRAELL 215 (240)
Q Consensus 197 EknlisMarEvEKLRaEla 215 (240)
-.---.|..|..+|-.=|-
T Consensus 178 ~~~n~~i~~ea~nLt~ALk 196 (475)
T PRK10361 178 QQLNAQMAQEAINLTRALK 196 (475)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 7766888999888876663
No 157
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=78.40 E-value=21 Score=30.74 Aligned_cols=39 Identities=28% Similarity=0.258 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhc
Q 026318 63 DNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRA 112 (240)
Q Consensus 63 thvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa 112 (240)
.-..|+.||+.++ .-+++-..++..+.++..++++++..
T Consensus 75 ~~~~l~~ELael~-----------r~~~el~~~L~~~~~~l~~l~~~~~~ 113 (194)
T PF08614_consen 75 KLAKLQEELAELY-----------RSKGELAQQLVELNDELQELEKELSE 113 (194)
T ss_dssp --------------------------------------------------
T ss_pred ccccccccccccc-----------cccccccccccccccccchhhhhHHH
Confidence 3344555555544 33444555555566666666655544
No 158
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=77.98 E-value=23 Score=26.60 Aligned_cols=50 Identities=14% Similarity=0.091 Sum_probs=38.2
Q ss_pred hhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhh
Q 026318 58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLE 107 (240)
Q Consensus 58 qRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmE 107 (240)
++|-+++.+|+-.|..+...+...-.....+..|+|.-++.|-+......
T Consensus 1 ~~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~ 50 (69)
T PF14197_consen 1 QKLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENN 50 (69)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888888888888888888887777666554433
No 159
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=77.79 E-value=69 Score=30.90 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccccccc
Q 026318 187 EEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGLGKI 227 (240)
Q Consensus 187 ~e~~Eq~qaMEknlisMarEvEKLRaElanaekRa~~~~~~ 227 (240)
.+..++....+.++...-.++++.+..+.+..-||-..|.+
T Consensus 287 ~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~~I~AP~dG~V 327 (457)
T TIGR01000 287 AKVKQEITDLNQKLLELESKIKSLKEDSQKGVIKAPEDGVL 327 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCEEECCCCeEE
Confidence 34455555666666677777777777777777777666666
No 160
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=77.73 E-value=24 Score=35.55 Aligned_cols=74 Identities=30% Similarity=0.476 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHH
Q 026318 41 EEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEV 120 (240)
Q Consensus 41 e~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El 120 (240)
-++..-+.+++.|..||..|.+..-.||+......+-|+ . +|..+-
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~---~-------------------------------av~~~~ 111 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQ---Q-------------------------------AVQSET 111 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH---H-------------------------------HHHhhh
Confidence 445566778888888888888888777765554443222 1 112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 121 VQLRAEVQKLNSSRQELTTQIKGLTKDV 148 (240)
Q Consensus 121 ~Q~r~e~q~L~a~RQELt~qvq~ltqeL 148 (240)
.++..+.+.|...+|.|.+++++|+..|
T Consensus 112 ~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 112 QELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333466666667777777777776665
No 161
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=77.56 E-value=54 Score=31.35 Aligned_cols=78 Identities=23% Similarity=0.320 Sum_probs=50.1
Q ss_pred hhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 026318 104 LKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEK 183 (240)
Q Consensus 104 ~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEK 183 (240)
.|.|.+--..-+|+.|.+-+.-.+..|...||-|+-.+|.-+.-+.=+ -.|+..-+..|+.|-+|+.++++-+|--.
T Consensus 53 qK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~l---EgQl~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 53 QKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFL---EGQLNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666677777777777777777777777776666544443322 23556666677777777777777666443
Q ss_pred h
Q 026318 184 K 184 (240)
Q Consensus 184 K 184 (240)
.
T Consensus 130 ~ 130 (307)
T PF10481_consen 130 Q 130 (307)
T ss_pred H
Confidence 3
No 162
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=77.30 E-value=1.5 Score=38.29 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=14.5
Q ss_pred cchHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHH
Q 026318 37 MTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKD 76 (240)
Q Consensus 37 ~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~ 76 (240)
++||.+| .|-..|..++|||-+.---||||| ..++
T Consensus 17 alLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl-~V~e 51 (166)
T PF04880_consen 17 ALLESEL----DEKENLREEVQRLKDELRDLKQEL-IVQE 51 (166)
T ss_dssp HHHHHHH----HHHHHHHHCH-------------------
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 4688888 788899999999999998999998 4443
No 163
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=77.15 E-value=1.4e+02 Score=33.89 Aligned_cols=10 Identities=10% Similarity=0.431 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 026318 42 EIEIQRREMH 51 (240)
Q Consensus 42 ~La~Q~~Eiq 51 (240)
++..+..|.+
T Consensus 476 ~lk~~~~el~ 485 (1317)
T KOG0612|consen 476 KLKSEESELQ 485 (1317)
T ss_pred HHHHHHHHHH
Confidence 3444444544
No 164
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=77.02 E-value=21 Score=29.68 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 026318 134 RQELTTQIKGLTKDVNRLEAENKQLIAMRADIDG 167 (240)
Q Consensus 134 RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~ 167 (240)
-.|+..-++.+.+.|.-.++..+|+-.+..-|+.
T Consensus 121 d~el~~l~~ql~~hl~s~~~n~~~l~~~~~~ie~ 154 (160)
T PF13094_consen 121 DEELLPLLKQLNKHLESMQNNLQQLKGLLEAIER 154 (160)
T ss_pred hHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 3466666666677777777777775555444443
No 165
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=77.01 E-value=27 Score=25.81 Aligned_cols=93 Identities=13% Similarity=0.274 Sum_probs=40.4
Q ss_pred HHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 67 LQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTK 146 (240)
Q Consensus 67 LrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltq 146 (240)
.+++|+.+..++......+..+....+.....+.... . -..+...-....-+..+...|..+......+..++....+
T Consensus 3 a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~-~-~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~ 80 (123)
T PF02050_consen 3 AEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQ-Q-GVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQARE 80 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------S-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666665555554432222222 1 1222222233334444444444444444444444444444
Q ss_pred HHHHHHHhhhhhHHH
Q 026318 147 DVNRLEAENKQLIAM 161 (240)
Q Consensus 147 eL~r~~~d~qqip~l 161 (240)
.|..+..+.+.+--|
T Consensus 81 ~l~~a~~~~k~~e~L 95 (123)
T PF02050_consen 81 ELQEARRERKKLEKL 95 (123)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 166
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=76.83 E-value=1.1e+02 Score=32.49 Aligned_cols=162 Identities=21% Similarity=0.270 Sum_probs=78.1
Q ss_pred hhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHH
Q 026318 58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQEL 137 (240)
Q Consensus 58 qRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQEL 137 (240)
..+...+-.+...+...+..+.+|......+.-....... .-.....++..+.....+...+.....+...|...-.+|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l 348 (908)
T COG0419 270 KIREEELRELERLLEELEEKIERLEELEREIEELEEELEG-LRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEEL 348 (908)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777778888888888887777766655555444 222222233222222222222222222222222222222
Q ss_pred HHHHHHHHHHHHHHHHhhhh-hHHHHHHHH-------HHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHH
Q 026318 138 TTQIKGLTKDVNRLEAENKQ-LIAMRADID-------GIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEK 209 (240)
Q Consensus 138 t~qvq~ltqeL~r~~~d~qq-ip~l~aEid-------~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEK 209 (240)
...-......+.......+. +-.+..++. .+..+++...+-...-.....+..++....++++-..-+++++
T Consensus 349 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~ 428 (908)
T COG0419 349 AEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEE 428 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222221111 122222222 2334444444444444555566666777777777777777777
Q ss_pred HHHHHhhhccc
Q 026318 210 LRAELLNTERR 220 (240)
Q Consensus 210 LRaElanaekR 220 (240)
++..+.+.+..
T Consensus 429 ~~~~~~~~~~~ 439 (908)
T COG0419 429 LEEEIKKLEEQ 439 (908)
T ss_pred HHHHHHHHHHH
Confidence 77776665433
No 167
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=76.79 E-value=44 Score=28.09 Aligned_cols=50 Identities=8% Similarity=0.244 Sum_probs=29.8
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhh
Q 026318 38 TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPK 87 (240)
Q Consensus 38 ~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~ 87 (240)
-+.+.+..-+.|+..+-..++-+......++.+....+++++....-+.+
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 134 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDS 134 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666655555444444433
No 168
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=76.70 E-value=52 Score=28.91 Aligned_cols=141 Identities=11% Similarity=0.162 Sum_probs=78.0
Q ss_pred HHHHHHhhhhhhHhhHHHHHHHH-hhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhh----cchhhHHHHHHHH
Q 026318 50 MHRIISENRHAIDDNTHLQRELT-ASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELR----ASEPVRAEVVQLR 124 (240)
Q Consensus 50 iqrLl~dNqRLAathvaLrqeL~-aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelR----a~e~lk~El~Q~r 124 (240)
...++.++..+|..|..+.+.|. ..-..|..+..-.. .....+.+-+.|+..+.. .++-.|..-.++-
T Consensus 62 ~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~-------~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c 134 (236)
T cd07651 62 LDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYT-------QKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADC 134 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999886 45555655433222 222233333333332221 2223333333322
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhH
Q 026318 125 AEVQKLNSSRQELT----TQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNL 200 (240)
Q Consensus 125 ~e~q~L~a~RQELt----~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknl 200 (240)
. .+...+.... .++..+...+.++..++ ...+.+....-+++...+.- |+.+- .+.+...|.||..=
T Consensus 135 ~---~~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~---~~~~~~Y~~~v~~~~~~~~~--~~~~~-~~~~~~~Q~lEe~R 205 (236)
T cd07651 135 S---KINSYTLQSQLTWGKELEKNNAKLNKAQSSI---NSSRRDYQNAVKALRELNEI--WNREW-KAALDDFQDLEEER 205 (236)
T ss_pred H---hHHHHHHHHcccCcchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHH
Confidence 2 2222222211 22333333444443332 33567777777788877774 66655 78888899998877
Q ss_pred HHHHHH
Q 026318 201 ISMARE 206 (240)
Q Consensus 201 isMarE 206 (240)
|..-++
T Consensus 206 i~~lk~ 211 (236)
T cd07651 206 IQFLKS 211 (236)
T ss_pred HHHHHH
Confidence 777665
No 169
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=76.63 E-value=53 Score=34.09 Aligned_cols=118 Identities=18% Similarity=0.244 Sum_probs=71.9
Q ss_pred HHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 026318 97 RELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEAR 176 (240)
Q Consensus 97 Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~R 176 (240)
+...+|+--||.|+. .++.+.+-.|.-|..|...|.||+-+|-.||.--+-++- -+-.-+-|+-.- |-++=
T Consensus 593 kG~Aeki~~me~Ei~---glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQgakK---AVhdaK~ElA~~---Y~klL 663 (790)
T PF07794_consen 593 KGYAEKIGFMEMEIG---GLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQGAKK---AVHDAKVELAAA---YSKLL 663 (790)
T ss_pred hhhHhhhhhhhhhhc---chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHH---HHHHH
Confidence 467788888998876 578899999999999999999999999988754332221 111122222111 11111
Q ss_pred Hhhh---hhhhcchHHHHH----------HHHHHHhHHHHHHHHHHHHHHHhhhcccccc
Q 026318 177 RAFE---FEKKANEEQIEQ----------KQAMENNLISMAREIEKLRAELLNTERRACG 223 (240)
Q Consensus 177 aa~E---yEKK~~~e~~Eq----------~qaMEknlisMarEvEKLRaElanaekRa~~ 223 (240)
+.|- --||-|.-..=| .+.|=||-|..+-|--.|.|||-.++.+-.+
T Consensus 664 agiKEKwv~KKe~t~le~qAaEvesNlaLidqi~kaaIdltvEkprlqAeLdd~ea~ck~ 723 (790)
T PF07794_consen 664 AGIKEKWVAKKEYTVLEGQAAEVESNLALIDQITKAAIDLTVEKPRLQAELDDLEARCKS 723 (790)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHhhchHHHhhhhh
Confidence 1110 113333322222 3345667777786777788999888766444
No 170
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=76.32 E-value=1.2e+02 Score=34.70 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=30.8
Q ss_pred HHHHHHHhhHHHHHHHhhhhhhhhhhhh---HhHHHHHhhhhhhh
Q 026318 66 HLQRELTASKDEIHRLGQIIPKLRADKE---AHTRELFDRGLKLE 107 (240)
Q Consensus 66 aLrqeL~aaq~El~~l~~~i~~i~ae~e---~q~Rel~ek~~KmE 107 (240)
+-++....+-+|++-|-..|.+..+..+ .+|++|.++.++||
T Consensus 1461 as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~ 1505 (1758)
T KOG0994|consen 1461 ASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALE 1505 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcc
Confidence 4456677777888888888887776654 36788888887776
No 171
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=76.10 E-value=49 Score=30.19 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 026318 137 LTTQIKGLTKDVNRLEAE----NKQLIAMRADIDGIRSELVEARRAFEFEKKA 185 (240)
Q Consensus 137 Lt~qvq~ltqeL~r~~~d----~qqip~l~aEid~lrqElqr~Raa~EyEKK~ 185 (240)
|-.+++...++|.+++.+ .+|...+.-|.|.|-.|++++|..++-.-|.
T Consensus 163 L~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~~~k 215 (216)
T KOG1962|consen 163 LETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESGGKK 215 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhccCCC
Confidence 334444555555555544 3567778888888989999999888866543
No 172
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=75.93 E-value=3.2 Score=44.39 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=17.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhh
Q 026318 193 KQAMENNLISMAREIEKLRAELLNT 217 (240)
Q Consensus 193 ~qaMEknlisMarEvEKLRaElana 217 (240)
.....||+..|-.-|-+|.-.+-|.
T Consensus 896 ad~ikK~~~~m~~~ik~Le~dlk~~ 920 (1102)
T KOG1924|consen 896 ADEIKKNLQQMENQIKKLERDLKNF 920 (1102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556777777777777777777663
No 173
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=75.69 E-value=47 Score=31.57 Aligned_cols=65 Identities=15% Similarity=0.260 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEA--ENKQLIAMRADIDGIRSELVEARRAFE 180 (240)
Q Consensus 116 lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~--d~qqip~l~aEid~lrqElqr~Raa~E 180 (240)
+-....|+|-++-.+...=-++..+++.|+.-=-+... -...|++.+.+|+.++.++..++..|+
T Consensus 39 ~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~ 105 (301)
T PF06120_consen 39 FYQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIK 105 (301)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567789999999999999999998888765333332 245688889999999999988888884
No 174
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=74.85 E-value=46 Score=27.32 Aligned_cols=78 Identities=17% Similarity=0.444 Sum_probs=34.9
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------hHHHHHHHHHHHHHHHHHHH
Q 026318 109 ELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ-----------LIAMRADIDGIRSELVEARR 177 (240)
Q Consensus 109 elRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qq-----------ip~l~aEid~lrqElqr~Ra 177 (240)
++...+.+-..+..+++|+..|...-+-|..++..+..++.-+.++..+ +-..+.|+..++-=++..++
T Consensus 50 ~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~t 129 (151)
T PF11559_consen 50 DMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKT 129 (151)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444555555555444555554444444433332222 22233444444444445555
Q ss_pred hhhhhhhcc
Q 026318 178 AFEFEKKAN 186 (240)
Q Consensus 178 a~EyEKK~~ 186 (240)
.|+.|-|..
T Consensus 130 q~~~e~rkk 138 (151)
T PF11559_consen 130 QYEHELRKK 138 (151)
T ss_pred HHHHHHHHH
Confidence 555554443
No 175
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=74.52 E-value=73 Score=29.54 Aligned_cols=98 Identities=15% Similarity=0.215 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHH
Q 026318 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQA 195 (240)
Q Consensus 116 lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qa 195 (240)
+++++.++.++...+.+..+...++++....+++|.+.=.++--..+.++|..+.++.-..+.+ ..
T Consensus 97 ~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~~~~~~~~~~~~~--------------~~ 162 (370)
T PRK11578 97 AENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLDTAATELAVKQAQI--------------GT 162 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH--------------HH
Confidence 4555556555555555555566666666666666665544444444556666555544443322 22
Q ss_pred HHHhHHHHHHHHHHHHHHHhhhcccccccccc
Q 026318 196 MENNLISMAREIEKLRAELLNTERRACGLGKI 227 (240)
Q Consensus 196 MEknlisMarEvEKLRaElanaekRa~~~~~~ 227 (240)
.+..+-..-..++.++..+.+..-+|--.|..
T Consensus 163 ~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V 194 (370)
T PRK11578 163 IDAQIKRNQASLDTAKTNLDYTRIVAPMAGEV 194 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCEEECCCCcEE
Confidence 33333344445555666666655555444433
No 176
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=74.25 E-value=38 Score=33.31 Aligned_cols=10 Identities=20% Similarity=0.936 Sum_probs=6.0
Q ss_pred chhhhhhhhh
Q 026318 228 SFFLGALTWS 237 (240)
Q Consensus 228 g~~~~~~~~~ 237 (240)
+|......|.
T Consensus 199 sY~v~~a~W~ 208 (525)
T TIGR02231 199 TYQVGNASWT 208 (525)
T ss_pred EEEeCCCcEe
Confidence 6666666664
No 177
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=74.18 E-value=67 Score=28.98 Aligned_cols=33 Identities=18% Similarity=0.081 Sum_probs=17.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhhcccccccccc
Q 026318 195 AMENNLISMAREIEKLRAELLNTERRACGLGKI 227 (240)
Q Consensus 195 aMEknlisMarEvEKLRaElanaekRa~~~~~~ 227 (240)
..+.++-+.-..++.....+.+..-+|-..|.+
T Consensus 183 ~~~~~~~~~~~~l~~a~~~l~~~~i~AP~dG~V 215 (327)
T TIGR02971 183 LAQAEVKSALEAVQQAEALLELTYVKAPIDGRV 215 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCEEECCCCeEE
Confidence 334444455555556666666666665554544
No 178
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=74.11 E-value=30 Score=26.25 Aligned_cols=59 Identities=22% Similarity=0.355 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 026318 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (240)
Q Consensus 118 ~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (240)
.|+.-+..+|+||.+.=-+...+++.|..| +-.+-++||.+-...-....++..+|..+
T Consensus 2 ~d~~eLk~evkKL~~~A~~~kmdLHDLaEd---LP~~w~~i~~vA~~ty~a~~~l~~ak~~L 60 (66)
T PF05082_consen 2 SDIEELKKEVKKLNRKATQAKMDLHDLAED---LPTNWEEIPEVAQKTYDAYAELDEAKAEL 60 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---TTTTGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788999999999999999999999 56888899998888888888887777654
No 179
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=74.08 E-value=15 Score=33.22 Aligned_cols=58 Identities=21% Similarity=0.260 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 026318 160 AMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNT 217 (240)
Q Consensus 160 ~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaElana 217 (240)
.|.+++++++|-+-.++--||.+|.++-+.=|---...+.+.+.-.+++-||.+++|.
T Consensus 85 eLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~ 142 (203)
T KOG3433|consen 85 ELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKI 142 (203)
T ss_pred HHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555556667888888776665555588888888888899999998874
No 180
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=74.07 E-value=33 Score=25.36 Aligned_cols=84 Identities=18% Similarity=0.287 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHH
Q 026318 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLT--KDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQ 192 (240)
Q Consensus 115 ~lk~El~Q~r~e~q~L~a~RQELt~qvq~lt--qeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq 192 (240)
....++.+....+..|...+.++...+.+.. -.+.....-...+..|...|+.+.+++..++.-++.=.+...+..-.
T Consensus 9 ~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~ 88 (123)
T PF02050_consen 9 EAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRE 88 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666667776666655554444 11233334445566677777777777777777777666666666666
Q ss_pred HHHHHH
Q 026318 193 KQAMEN 198 (240)
Q Consensus 193 ~qaMEk 198 (240)
.+++|+
T Consensus 89 ~k~~e~ 94 (123)
T PF02050_consen 89 RKKLEK 94 (123)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666665
No 181
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=74.06 E-value=4.9 Score=31.82 Aligned_cols=47 Identities=19% Similarity=0.368 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 026318 136 ELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFE 182 (240)
Q Consensus 136 ELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyE 182 (240)
.+.++++.+.+++...+.-+.+++.++++++.+++++......+=.+
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~lP~~ 49 (144)
T PF04350_consen 3 TLQAQIQQLQQELAQLKEKVANLEELKKQLEQLEQQLEELLKKLPAE 49 (144)
T ss_dssp ---------HHHHHHTGGG-SSHHHHHHHHHHHHHHHHHHHHCTTGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 45678888999999999999999999999999999999888877544
No 182
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=73.97 E-value=33 Score=28.77 Aligned_cols=62 Identities=26% Similarity=0.450 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (240)
Q Consensus 118 ~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (240)
.|+..+..++..|...-++|...+..+..+|..+.+..- ...|...|..|.+|+....+-++
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t-~~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPT-NEELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555554444322 23455666666666666555555
No 183
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=73.40 E-value=60 Score=29.22 Aligned_cols=83 Identities=25% Similarity=0.336 Sum_probs=52.3
Q ss_pred HHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 68 QRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASE----PVRAEVVQLRAEVQKLNSSRQELTTQIKG 143 (240)
Q Consensus 68 rqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e----~lk~El~Q~r~e~q~L~a~RQELt~qvq~ 143 (240)
+|-..-|.-||++..-...+..+|+-+...+ ++...|.+||.-.- .+-..-.++|.|++.|.+.|+..-.|+..
T Consensus 95 ~Qt~~LA~~eirR~~LeAQka~~eR~ia~~~--~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~ 172 (192)
T PF11180_consen 95 QQTARLADVEIRRAQLEAQKAQLERLIAESE--ARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQ 172 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667788888877666666666554444 56666666665542 33334456677777777777777776666
Q ss_pred HHHHHHHHH
Q 026318 144 LTKDVNRLE 152 (240)
Q Consensus 144 ltqeL~r~~ 152 (240)
+...+..++
T Consensus 173 lQ~qv~~Lq 181 (192)
T PF11180_consen 173 LQRQVRQLQ 181 (192)
T ss_pred HHHHHHHHH
Confidence 665555444
No 184
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=73.33 E-value=75 Score=29.11 Aligned_cols=87 Identities=20% Similarity=0.282 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHH
Q 026318 127 VQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMARE 206 (240)
Q Consensus 127 ~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarE 206 (240)
++=|.+.++=+..++..+..++-...=-...||+++- +|.+|..++...+-+...-...++.-+++-.-+-..|+|
T Consensus 142 ~~~L~~kceam~lKLr~~~~~iL~~TYTpe~v~Al~~----Ir~~L~~~~~~~e~~~~~a~~~L~~Ye~lg~~F~~ivre 217 (238)
T PF14735_consen 142 AEYLEAKCEAMILKLRVLELEILSDTYTPETVPALRK----IRDHLEEAIEELEQELQKARQRLESYEGLGPEFEEIVRE 217 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 3455666666666666666666544444444555442 555555555555555555555555555566666667777
Q ss_pred HHHHHHHHhhh
Q 026318 207 IEKLRAELLNT 217 (240)
Q Consensus 207 vEKLRaElana 217 (240)
--.|+.+|.|.
T Consensus 218 Y~~l~~~ie~k 228 (238)
T PF14735_consen 218 YTDLQQEIENK 228 (238)
T ss_pred HHHHHHHHHHH
Confidence 77777766664
No 185
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=73.21 E-value=92 Score=30.09 Aligned_cols=97 Identities=13% Similarity=0.293 Sum_probs=59.9
Q ss_pred HHhhhhhhhhhhhcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 026318 99 LFDRGLKLEVELRAS-EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR 177 (240)
Q Consensus 99 l~ek~~KmEAelRa~-e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra 177 (240)
.+||+.+=|.-|-.- +++..|..+++.+..+....-+++++-|..+|++|++ +..|++.+++|+.
T Consensus 253 ~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~----------IseeLe~vK~eme---- 318 (359)
T PF10498_consen 253 TLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAE----------ISEELEQVKQEME---- 318 (359)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH----------HHHHHHHHHHHHH----
Confidence 455666555555433 6777777777777777777777777777777777664 4455555555553
Q ss_pred hhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhccc
Q 026318 178 AFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERR 220 (240)
Q Consensus 178 a~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaElanaekR 220 (240)
||...+.-- ..||.+-+=|-||+.|+..-+-|
T Consensus 319 ----erg~~mtD~-------sPlv~IKqAl~kLk~EI~qMdvr 350 (359)
T PF10498_consen 319 ----ERGSSMTDG-------SPLVKIKQALTKLKQEIKQMDVR 350 (359)
T ss_pred ----HhcCCCCCC-------CHHHHHHHHHHHHHHHHHHhhhh
Confidence 222111111 24666777778888888776655
No 186
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=73.08 E-value=74 Score=28.96 Aligned_cols=89 Identities=16% Similarity=0.101 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchH-----HHHHHHHHHHhHHHHHHHHHHHHHH
Q 026318 139 TQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEE-----QIEQKQAMENNLISMAREIEKLRAE 213 (240)
Q Consensus 139 ~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e-----~~Eq~qaMEknlisMarEvEKLRaE 213 (240)
.++....+++.|.+.=.++--.-+.++|..+.++..+++.++.-+..... ..++....+..+-+-...+++++..
T Consensus 121 ~~l~~a~~~~~r~~~L~~~g~vs~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~a~~~ 200 (331)
T PRK03598 121 AAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQATLKSAQDKLSQYREGNRPQDIAQAKASLAQAQAALAQAELN 200 (331)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555444444444556666666666666655543322111 1123344445555555566777777
Q ss_pred Hhhhcccccccccc
Q 026318 214 LLNTERRACGLGKI 227 (240)
Q Consensus 214 lanaekRa~~~~~~ 227 (240)
+.+..-+|-..|..
T Consensus 201 l~~~~I~AP~dG~V 214 (331)
T PRK03598 201 LQDTELIAPSDGTI 214 (331)
T ss_pred HhcCEEECCCCeEE
Confidence 76666666554544
No 187
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.85 E-value=26 Score=33.46 Aligned_cols=75 Identities=16% Similarity=0.234 Sum_probs=58.4
Q ss_pred hhhhhhhcchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHHHhh
Q 026318 105 KLEVELRASEPVRAEVVQLRAEVQ-KLNSSRQELTTQIKGLTKDVNRLEAE----NKQLIAMRADIDGIRSELVEARRAF 179 (240)
Q Consensus 105 KmEAelRa~e~lk~El~Q~r~e~q-~L~a~RQELt~qvq~ltqeL~r~~~d----~qqip~l~aEid~lrqElqr~Raa~ 179 (240)
|+|++-++.+..-.++.+.-..++ .+...+|.|+.|-+.+..+|..+.+- ...+..+..||+.+.+++-..+...
T Consensus 119 k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~lvln~~~f~ 198 (300)
T KOG2629|consen 119 KLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNTLVQLSRNIEKLESEINTIKQLVLNMSNFA 198 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccccC
Confidence 678888877777777766655554 45667888888888888888888776 7778889999999999987766544
No 188
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=72.46 E-value=50 Score=30.26 Aligned_cols=43 Identities=30% Similarity=0.398 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 026318 158 LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAEL 214 (240)
Q Consensus 158 ip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaEl 214 (240)
+|.+.+..|..|+ -|.|+=++.......+.++-+||++|+++=
T Consensus 81 LpIVtsQRDRFR~--------------Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN 123 (248)
T PF08172_consen 81 LPIVTSQRDRFRQ--------------RNAELEEELRKQQQTISSLRREVESLRADN 123 (248)
T ss_pred HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666553 456777788888888889999999999983
No 189
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=72.41 E-value=1.4e+02 Score=31.91 Aligned_cols=156 Identities=24% Similarity=0.345 Sum_probs=99.8
Q ss_pred HHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHH
Q 026318 52 RIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLN 131 (240)
Q Consensus 52 rLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~ 131 (240)
+++..=+.|-.+-..||-+|...+.|+..-..-+..---..|.-.|.+.--..+.+..+.. +...+.-+|..|..-.
T Consensus 531 ~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~---lenk~~~LrKqvEnk~ 607 (786)
T PF05483_consen 531 KMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKI---LENKCNNLRKQVENKN 607 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3333334455555566888888888877766655544445555555555555555544443 3344444444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHH
Q 026318 132 SSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLR 211 (240)
Q Consensus 132 a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLR 211 (240)
..=.+|-.+-..|.+. ..++..|+..+---|..|+-|+..+..-|+-+-..+-.-+|...+-|-||. -||+|++
T Consensus 608 K~ieeLqqeNk~LKKk---~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~---~EveK~k 681 (786)
T PF05483_consen 608 KNIEELQQENKALKKK---ITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELL---GEVEKAK 681 (786)
T ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHH
Confidence 3333444444444432 346888888888888889999999988899998888888998888888765 5888888
Q ss_pred HHHhh
Q 026318 212 AELLN 216 (240)
Q Consensus 212 aElan 216 (240)
.-..-
T Consensus 682 ~~a~E 686 (786)
T PF05483_consen 682 LTADE 686 (786)
T ss_pred HHHHH
Confidence 75443
No 190
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=72.38 E-value=1.4e+02 Score=31.88 Aligned_cols=68 Identities=24% Similarity=0.322 Sum_probs=38.7
Q ss_pred hhhhhhhhhhHhHHHHHhhhh--------hhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026318 84 IIPKLRADKEAHTRELFDRGL--------KLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE 154 (240)
Q Consensus 84 ~i~~i~ae~e~q~Rel~ek~~--------KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d 154 (240)
.+..++-|.|..|.+.+-+.. .||+.| ..+...|..+.+|.-.|..+-|+-+.-|..|+....++-+|
T Consensus 60 qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l---~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~ 135 (769)
T PF05911_consen 60 QLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKL---AELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAE 135 (769)
T ss_pred HHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 445677788887777665431 233322 23455666666666666666666555565565554444433
No 191
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=72.25 E-value=1.2e+02 Score=31.19 Aligned_cols=45 Identities=22% Similarity=0.260 Sum_probs=23.9
Q ss_pred cchHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHH
Q 026318 37 MTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRL 81 (240)
Q Consensus 37 ~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l 81 (240)
.-.+++...+..|++.|=..=+.|......+..++..-+.++..+
T Consensus 317 ~~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~ 361 (594)
T PF05667_consen 317 ETEEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQL 361 (594)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777665554444444444444444444444333
No 192
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=71.71 E-value=44 Score=25.79 Aligned_cols=41 Identities=27% Similarity=0.360 Sum_probs=24.3
Q ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 106 LEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTK 146 (240)
Q Consensus 106 mEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltq 146 (240)
....+-.+-.+-.+..++..+++.|.+.|..+|.+|..+.+
T Consensus 24 ~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~ 64 (108)
T PF02403_consen 24 DEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKK 64 (108)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 33444444444455556666677777777777776666655
No 193
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=71.16 E-value=1.1e+02 Score=31.04 Aligned_cols=57 Identities=25% Similarity=0.288 Sum_probs=37.1
Q ss_pred HhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 94 AHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR 150 (240)
Q Consensus 94 ~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r 150 (240)
.+.+.+..+.....+.+.....++.++.+.+.+.+.+.....++.++...+...+..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~ 92 (475)
T PRK10361 36 AEREEMVAELSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEA 92 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334666667777777776666777777777776666666666666666666655543
No 194
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=70.93 E-value=83 Score=31.01 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (240)
Q Consensus 115 ~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~ 152 (240)
.++.|-+++..-.+.+.-.+.|...+.|.|+.||+-+.
T Consensus 138 ~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~l 175 (401)
T PF06785_consen 138 HLREENQCLQLQLDALQQECGEKEEESQTLNRELAEAL 175 (401)
T ss_pred HHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence 45566666666666666666667777777777666543
No 195
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=70.71 E-value=1e+02 Score=29.54 Aligned_cols=98 Identities=21% Similarity=0.316 Sum_probs=64.5
Q ss_pred HHHHHHhhhh----hhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHH
Q 026318 50 MHRIISENRH----AIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRA 125 (240)
Q Consensus 50 iqrLl~dNqR----LAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~ 125 (240)
|.+-+-|=|| |+--.|.|+.|+-++-..|...=+-+.+.=.|+|. +|-+|+..|..
T Consensus 155 IEKSvKDLqRctvSL~RYr~~lkee~d~S~k~ik~~F~~l~~cL~dREv--------------------aLl~EmdkVK~ 214 (302)
T PF07139_consen 155 IEKSVKDLQRCTVSLTRYRVVLKEEMDSSIKKIKQTFAELQSCLMDREV--------------------ALLAEMDKVKA 214 (302)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHH
Confidence 4444445454 44457788888877765555444433333333333 78899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 026318 126 EVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIR 169 (240)
Q Consensus 126 e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lr 169 (240)
|+..+-.+||.=...+..+|.--.+. .=.|+-.|+|||--.-
T Consensus 215 EAmeiL~aRqkkAeeLkrltd~A~~M--sE~Ql~ELRadIK~fv 256 (302)
T PF07139_consen 215 EAMEILDARQKKAEELKRLTDRASQM--SEEQLAELRADIKHFV 256 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHh
Confidence 99999999999888887777543222 2236788888886543
No 196
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=70.33 E-value=1.7e+02 Score=32.07 Aligned_cols=72 Identities=22% Similarity=0.327 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHH----HHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHH
Q 026318 136 ELTTQIKGLTKDVNR----LEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREI 207 (240)
Q Consensus 136 ELt~qvq~ltqeL~r----~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEv 207 (240)
+|..+|..+..+..+ ..+..+.+-.++.|+..+.-|+..+-.++..---.++..++|.-..+++=+..+-|+
T Consensus 470 ~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~ 545 (980)
T KOG0980|consen 470 NLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAEL 545 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344444444444433 456677888999999999999988888877777777777777777777766555443
No 197
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=70.15 E-value=1.2e+02 Score=32.30 Aligned_cols=117 Identities=23% Similarity=0.196 Sum_probs=69.5
Q ss_pred CCccchHHHHHHHHHHHHHHHHhhhhhhHhhHHHHH----HHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhh
Q 026318 34 FHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQR----ELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVE 109 (240)
Q Consensus 34 p~p~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrq----eL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAe 109 (240)
+.|.+||.|+.+=..|+..|-.+=..|=+.+..+.. +...-+.+++.|...+..... -.++-=+++..||+|
T Consensus 352 ~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek----~~re~qeri~~LE~E 427 (717)
T PF09730_consen 352 NGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEK----SSREDQERISELEKE 427 (717)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhHHHHHHHHHH
Confidence 457899999999999998886666655544444433 222233344444433333311 112223466777777
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 026318 110 LRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIA 160 (240)
Q Consensus 110 lRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~ 160 (240)
|++.-.+-.|-.. +|.++..||++=-..|.+=-...+.-+.-.|.
T Consensus 428 Lr~l~~~A~E~q~------~LnsAQDELvtfSEeLAqLYHHVC~cNgeTPn 472 (717)
T PF09730_consen 428 LRALSKLAGESQG------SLNSAQDELVTFSEELAQLYHHVCMCNGETPN 472 (717)
T ss_pred HHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCc
Confidence 7766555555443 68888888877666666666666666666664
No 198
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=70.00 E-value=38 Score=32.87 Aligned_cols=30 Identities=30% Similarity=0.437 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGL 144 (240)
Q Consensus 115 ~lk~El~Q~r~e~q~L~a~RQELt~qvq~l 144 (240)
.+-.+..++..+++.|.+.|..++.++..+
T Consensus 34 ~ld~~~r~~~~~~~~l~~erN~~sk~i~~~ 63 (418)
T TIGR00414 34 ALDDERKKLLSEIEELQAKRNELSKQIGKA 63 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666777777777777777553
No 199
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=69.66 E-value=89 Score=28.44 Aligned_cols=51 Identities=16% Similarity=0.350 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 026318 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSE 171 (240)
Q Consensus 118 ~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqE 171 (240)
.||.|++.||..|.+.=+.+..+-........+... .+--|+.+||.+|.|
T Consensus 53 eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~e---ey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 53 EELRQINQDINTLENIIKQAESERNKRQEKIQRLYE---EYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 456666666666555444444333333333333332 133466677777666
No 200
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=69.27 E-value=24 Score=35.79 Aligned_cols=18 Identities=39% Similarity=0.608 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhhhccc
Q 026318 202 SMAREIEKLRAELLNTERR 220 (240)
Q Consensus 202 sMarEvEKLRaElanaekR 220 (240)
+| +|+|.||-+|.+||++
T Consensus 307 ~r-kelE~lR~~L~kAEke 324 (575)
T KOG4403|consen 307 SR-KELEQLRVALEKAEKE 324 (575)
T ss_pred HH-HHHHHHHHHHHHHHHH
Confidence 44 6999999999999987
No 201
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=68.79 E-value=1.2e+02 Score=31.34 Aligned_cols=145 Identities=15% Similarity=0.284 Sum_probs=68.4
Q ss_pred HHHHHHHhhHHH-HHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcch----hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 66 HLQRELTASKDE-IHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASE----PVRAEVVQLRAEVQKLNSSRQELTTQ 140 (240)
Q Consensus 66 aLrqeL~aaq~E-l~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e----~lk~El~Q~r~e~q~L~a~RQELt~q 140 (240)
++-|||.+.=.+ .+.+...|+.++++.|- +-+.|.-++||..-+...+ .|+.+.....+-+..+..-.|+-++.
T Consensus 253 ~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~-l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~ 331 (622)
T COG5185 253 PSEQELKLGFEKFVHIINTDIANLKTQNDN-LYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGK 331 (622)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchH
Confidence 455666554333 46667777777776653 2222233344433332222 22333333333333333333333333
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhc
Q 026318 141 IKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTE 218 (240)
Q Consensus 141 vq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaElanae 218 (240)
+..|..+...-.+ +|-+|++-+|+|+..+-.-+-.+|-=++-|.| .-.+-+||--|--+.+||+.++-..+
T Consensus 332 l~kl~~eie~kEe---ei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~E----re~L~reL~~i~~~~~~L~k~V~~~~ 402 (622)
T COG5185 332 LEKLKSEIELKEE---EIKALQSNIDELHKQLRKQGISTEQFELMNQE----REKLTRELDKINIQSDKLTKSVKSRK 402 (622)
T ss_pred HHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHH----HHHHHHHHHHhcchHHHHHHHHHhHH
Confidence 3333333332222 34556666666665554444333322222222 22355777778888888888775543
No 202
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=68.75 E-value=28 Score=25.60 Aligned_cols=36 Identities=33% Similarity=0.506 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026318 120 VVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN 155 (240)
Q Consensus 120 l~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~ 155 (240)
+.++-+||+.|.+-=..|+..|..+..|+.-++.|.
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EA 40 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEA 40 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555444443
No 203
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=68.67 E-value=56 Score=32.15 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=18.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhc
Q 026318 191 EQKQAMENNLISMAREIEKLRAELLNTE 218 (240)
Q Consensus 191 Eq~qaMEknlisMarEvEKLRaElanae 218 (240)
.+....+.-+-.+.+++++|+.+|.+..
T Consensus 145 ~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 145 TEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444555555667778888888876654
No 204
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=68.59 E-value=54 Score=25.51 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 026318 135 QELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR 177 (240)
Q Consensus 135 QELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra 177 (240)
++|..+.+.+.+++...+....++-....|++.+..++..+-.
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~ 44 (129)
T cd00890 2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKK 44 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455555566666666666666666666666666666666653
No 205
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=67.94 E-value=83 Score=33.03 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=33.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHH-HHHHHHHHHHHH
Q 026318 155 NKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLI-SMAREIEKLRAE 213 (240)
Q Consensus 155 ~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknli-sMarEvEKLRaE 213 (240)
...+-++.-+|+.|+.+|+.-...+|-= +.....+.+++.||-.=- .=.+.|+|++-+
T Consensus 473 ~rei~~~~~~I~~L~~~L~e~~~~ve~L-~~~l~~l~k~~~lE~sG~g~pvk~ve~~t~~ 531 (652)
T COG2433 473 DREIRARDRRIERLEKELEEKKKRVEEL-ERKLAELRKMRKLELSGKGTPVKVVEKLTLE 531 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhcCCCcceehhhhhhHH
Confidence 3446677777777777777776666532 233455666666664211 112567777744
No 206
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=67.92 E-value=91 Score=27.92 Aligned_cols=147 Identities=20% Similarity=0.227 Sum_probs=80.7
Q ss_pred CCccchHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcc
Q 026318 34 FHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRAS 113 (240)
Q Consensus 34 p~p~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~ 113 (240)
|+|--|+-.+.--..+++.......- -++-+...+.++..|...+..+... +.....++.++ -.++
T Consensus 17 ~~~~~l~~~~e~~~~~L~~~~~~~~~-------~~~~~~~~e~~l~~L~~d~~~L~~k----~~~~~~~~~~l---~~~t 82 (264)
T PF06008_consen 17 PAPYKLLSSIEDLTNQLRSYRSKLNP-------QKQQLDPLEKELESLEQDVENLQEK----ATKVSRKAQQL---NNNT 82 (264)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccchh-------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH---HHHH
Confidence 45666777777766677666654432 2233333333333333333222211 11122222222 2333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-----HHHHHhhhhhhhcchH
Q 026318 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSEL-----VEARRAFEFEKKANEE 188 (240)
Q Consensus 114 e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqEl-----qr~Raa~EyEKK~~~e 188 (240)
+.+......+..+|+++...=+++..++..+.+ .-.......++.+.+|++.|=+|+ ...|..-|.|++.--+
T Consensus 83 ~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~--~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~ 160 (264)
T PF06008_consen 83 ERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE--NGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAED 160 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--ccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 455555555556666666655566666655555 222336677788888888888887 4567777888887777
Q ss_pred HHHHHHHH
Q 026318 189 QIEQKQAM 196 (240)
Q Consensus 189 ~~Eq~qaM 196 (240)
++...+.-
T Consensus 161 LL~~v~~~ 168 (264)
T PF06008_consen 161 LLSRVQKW 168 (264)
T ss_pred HHHHHHHH
Confidence 77766653
No 207
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=67.69 E-value=1.5e+02 Score=30.20 Aligned_cols=17 Identities=29% Similarity=0.302 Sum_probs=7.3
Q ss_pred HhHHHHHhhhhhhhhhh
Q 026318 94 AHTRELFDRGLKLEVEL 110 (240)
Q Consensus 94 ~q~Rel~ek~~KmEAel 110 (240)
.++-.+.++..++|.++
T Consensus 391 ~~~~~~~~~~~~~e~el 407 (650)
T TIGR03185 391 DAKSQLLKELRELEEEL 407 (650)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 208
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=67.62 E-value=1.7 Score=44.33 Aligned_cols=133 Identities=23% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhh-------hh--HhHHHHHhhhhhhhhhh
Q 026318 40 EEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRAD-------KE--AHTRELFDRGLKLEVEL 110 (240)
Q Consensus 40 Ee~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae-------~e--~q~Rel~ek~~KmEAel 110 (240)
..+++.-...+++|-.++.++-+..--++.++...+.|+..|.+-...+.++ +| -.+|+-.+|..|+|+++
T Consensus 238 ~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~v 317 (713)
T PF05622_consen 238 SVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEV 317 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555554444333333333333332222222222111 11 12455556666666655
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 026318 111 RASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSEL 172 (240)
Q Consensus 111 Ra~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqEl 172 (240)
-..--==.|+.-++..++.|..--..|..+.-.+-.+|.++.+--.++-.++.+|..|.+++
T Consensus 318 e~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l 379 (713)
T PF05622_consen 318 EKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKL 379 (713)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44322222334444444444444444444444455555554444444444444444443333
No 209
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=67.55 E-value=1.7e+02 Score=30.86 Aligned_cols=75 Identities=21% Similarity=0.349 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhh----hcchHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 026318 142 KGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEK----KANEEQIEQKQAMENNLISMAREIEKLRAELLNT 217 (240)
Q Consensus 142 q~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEK----K~~~e~~Eq~qaMEknlisMarEvEKLRaElana 217 (240)
..+.+||.+.+... ..|++=|+.++.-+...+.-++..+ +...=.--|++.+...|-.++.+|..|-.++-+-
T Consensus 635 r~~~~EL~~~~~~l---~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i 711 (717)
T PF10168_consen 635 REFKKELERMKDQL---QDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNI 711 (717)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555433 3345555555555444444444222 2223345789999999999999999999888765
Q ss_pred cc
Q 026318 218 ER 219 (240)
Q Consensus 218 ek 219 (240)
.+
T Consensus 712 ~~ 713 (717)
T PF10168_consen 712 KK 713 (717)
T ss_pred HH
Confidence 43
No 210
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=67.17 E-value=51 Score=25.42 Aligned_cols=30 Identities=30% Similarity=0.573 Sum_probs=14.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIK 142 (240)
Q Consensus 113 ~e~lk~El~Q~r~e~q~L~a~RQELt~qvq 142 (240)
.+.+++|+..+..++..|.....++..+++
T Consensus 69 ~~~l~~e~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544444444443
No 211
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=67.17 E-value=1.4e+02 Score=29.93 Aligned_cols=105 Identities=15% Similarity=0.214 Sum_probs=66.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----------------HH----HHHHHHHHHHHH
Q 026318 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL----------------IA----MRADIDGIRSEL 172 (240)
Q Consensus 113 ~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqi----------------p~----l~aEid~lrqEl 172 (240)
.+.++.++..+...+..+...+.++...++++.++-..++...+.+ |. ...-+..+..++
T Consensus 378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i 457 (569)
T PRK04778 378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEI 457 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHH
Confidence 3456666666666677777777777777777766665554433332 22 123345567788
Q ss_pred HHHHHhhhhhhhcchHHHH-HHHHHHHhHHHHHHHHHHHHHHHhhhc
Q 026318 173 VEARRAFEFEKKANEEQIE-QKQAMENNLISMAREIEKLRAELLNTE 218 (240)
Q Consensus 173 qr~Raa~EyEKK~~~e~~E-q~qaMEknlisMarEvEKLRaElanae 218 (240)
.++...++. ..-|++-++ +....+.-+-.+..+.+-|......++
T Consensus 458 ~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE 503 (569)
T PRK04778 458 EALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEELVENATLTE 503 (569)
T ss_pred HHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888 778888888 777766666666666665555444433
No 212
>PRK11519 tyrosine kinase; Provisional
Probab=66.68 E-value=1.2e+02 Score=31.39 Aligned_cols=22 Identities=5% Similarity=0.181 Sum_probs=10.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q 026318 191 EQKQAMENNLISMAREIEKLRA 212 (240)
Q Consensus 191 Eq~qaMEknlisMarEvEKLRa 212 (240)
-+.++=++.|..+..=.+.++-
T Consensus 377 Re~~~~~~lY~~lL~r~~e~~i 398 (719)
T PRK11519 377 RDVESGQQVYMQLLNKQQELKI 398 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH
Confidence 3444444555555555555443
No 213
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=66.34 E-value=1.5e+02 Score=29.76 Aligned_cols=119 Identities=22% Similarity=0.301 Sum_probs=79.2
Q ss_pred HHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhh-hhc-chhhHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 026318 68 QRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVE-LRA-SEPVRAEVVQLR----AEVQKLNSSRQELTTQI 141 (240)
Q Consensus 68 rqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAe-lRa-~e~lk~El~Q~r----~e~q~L~a~RQELt~qv 141 (240)
..||...++||..|++.-.+..++-..-|-.+.+|+.++-.= +-+ .++=|+=+..-+ .+.++|.+-=.+|..-|
T Consensus 154 ~~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~v 233 (426)
T smart00806 154 RAELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDII 233 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777777777777777777777788888888777431 111 233333333322 34455555555555555
Q ss_pred HHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 026318 142 KGLTKDVNR--LEAENKQLIAMRADIDGIRSELVEARRAFEFEKKAN 186 (240)
Q Consensus 142 q~ltqeL~r--~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~ 186 (240)
..|.+|+.. .+.-.+|+-.+.-||+...+||+..-.-+.-||-.-
T Consensus 234 E~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~W 280 (426)
T smart00806 234 EALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIW 280 (426)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHH
Confidence 566666553 334568999999999999999999999998888643
No 214
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=66.32 E-value=69 Score=25.92 Aligned_cols=39 Identities=28% Similarity=0.331 Sum_probs=23.1
Q ss_pred hhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 026318 179 FEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNT 217 (240)
Q Consensus 179 ~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaElana 217 (240)
++|=++.-...-++.+.+++++.....+++.+...+...
T Consensus 96 ~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 96 IEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344445566677777777777777776666543
No 215
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=65.84 E-value=47 Score=32.33 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=23.1
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 110 LRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLT 145 (240)
Q Consensus 110 lRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~lt 145 (240)
+-.+-.+-.+..++..+++.|.+.|.+++.++..+.
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~ 62 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAK 62 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444555666667777777777777777776533
No 216
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=65.05 E-value=67 Score=25.30 Aligned_cols=84 Identities=17% Similarity=0.218 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 026318 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR----------LEAENKQLIAMRADIDGIRSELVEARRAFEFEKK 184 (240)
Q Consensus 115 ~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r----------~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK 184 (240)
..+.+|.++..+.+.....-+.|........+++.. ...=...+..|...|+..++.+..++..++.-++
T Consensus 17 ~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~~~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~ 96 (141)
T TIGR02473 17 QAKLELAKAQAEFERLETQLQQLIKYREEYEQQALEKVGAGTSALELSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRE 96 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555544444444444444444444443322 2223345677788888888888888888888888
Q ss_pred cchHHHHHHHHHHH
Q 026318 185 ANEEQIEQKQAMEN 198 (240)
Q Consensus 185 ~~~e~~Eq~qaMEk 198 (240)
...+-.-..++|||
T Consensus 97 ~l~~a~~~~k~lek 110 (141)
T TIGR02473 97 RLLEARRELKALEK 110 (141)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777776
No 217
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.99 E-value=36 Score=33.27 Aligned_cols=88 Identities=22% Similarity=0.259 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHH
Q 026318 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ-LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQ 194 (240)
Q Consensus 116 lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qq-ip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~q 194 (240)
+|+++.. +...+|-..++|-+...+.+..+|.|-..++.. .-.|+++++.|.|+++.+-..||-=|+.-.|++|-.+
T Consensus 207 irasvis--a~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~ 284 (365)
T KOG2391|consen 207 IRASVIS--AVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAE 284 (365)
T ss_pred hhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc
Confidence 6666655 566677777888888888888888777666543 4567788888888888888888777666666555554
Q ss_pred HHHHhHHHHHH
Q 026318 195 AMENNLISMAR 205 (240)
Q Consensus 195 aMEknlisMar 205 (240)
..+-+=|.+|.
T Consensus 285 n~~~~~~D~~~ 295 (365)
T KOG2391|consen 285 NLEALDIDEAI 295 (365)
T ss_pred cCcCCCchhhh
Confidence 44444444443
No 218
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=64.88 E-value=79 Score=26.10 Aligned_cols=61 Identities=23% Similarity=0.367 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchH
Q 026318 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEE 188 (240)
Q Consensus 118 ~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e 188 (240)
.++.........|...|.+|.+.++.|.++-. +-+|.+..|.+.|+.++ ..+|-||-++.+
T Consensus 23 ~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~---s~~qr~~eLqaki~ea~-------~~le~eK~ak~~ 83 (107)
T PF09304_consen 23 RSLEDEKTSQGELAKQKDQLRNALQSLQAQNA---SRNQRIAELQAKIDEAR-------RNLEDEKQAKLE 83 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 44555555666777888888888888876533 45566666666666654 455555544433
No 219
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=64.48 E-value=59 Score=24.49 Aligned_cols=54 Identities=33% Similarity=0.523 Sum_probs=34.1
Q ss_pred hhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 87 KLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR 150 (240)
Q Consensus 87 ~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r 150 (240)
+.=+|+|.+|-.|++-+-+|. +.|+ +.+.-|++|.+.=+++..++..+...++.
T Consensus 5 ~~l~EKDe~Ia~L~eEGekLS---------k~el-~~~~~IKKLr~~~~e~e~~~~~l~~~~~~ 58 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEKLS---------KKEL-KLNNTIKKLRAKIKELEKQIKELKKKLEE 58 (74)
T ss_pred HHHHhHHHHHHHHHHHHHHHH---------HHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344789999999998887776 2333 33455666666666666666665555443
No 220
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=64.29 E-value=38 Score=24.15 Aligned_cols=36 Identities=25% Similarity=0.512 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (240)
Q Consensus 117 k~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~ 152 (240)
+..+.++...+..|...-..|..++..|.+++..+.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555444445444444444444433
No 221
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=64.24 E-value=99 Score=27.02 Aligned_cols=113 Identities=16% Similarity=0.224 Sum_probs=65.6
Q ss_pred HHHHHhhHHHHHHHhhhhhhhhhhhh-----HhHHHHHhhhhhhhhhhhcchhhH-----HHHHHHHHHHHHHHHHHHHH
Q 026318 68 QRELTASKDEIHRLGQIIPKLRADKE-----AHTRELFDRGLKLEVELRASEPVR-----AEVVQLRAEVQKLNSSRQEL 137 (240)
Q Consensus 68 rqeL~aaq~El~~l~~~i~~i~ae~e-----~q~Rel~ek~~KmEAelRa~e~lk-----~El~Q~r~e~q~L~a~RQEL 137 (240)
|++|+.+-.|+-..-..++.+..... ..+-++.+++..+....-..+.+. .|..-.=.=|+.+-..|..+
T Consensus 34 r~ela~~~~efa~~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~~a~~e~~~l~~~L~ey~r~~~Svk~~~~~R~~~ 113 (216)
T cd07627 34 RKELASATEEFAETLEALSSLELSKSLSDLLAALAEVQKRIKESLERQALQDVLTLGVTLDEYIRSIGSVRAAFAQRQKL 113 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666665554444444331111 234555555555555433332222 23333334456666777777
Q ss_pred HHHHHHHHHHHHHHHHh-----------hhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318 138 TTQIKGLTKDVNRLEAE-----------NKQLIAMRADIDGIRSELVEARRAFE 180 (240)
Q Consensus 138 t~qvq~ltqeL~r~~~d-----------~qqip~l~aEid~lrqElqr~Raa~E 180 (240)
-..++.+.++|.+.++. ..+++.+..||+.+....+.++..||
T Consensus 114 ~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e 167 (216)
T cd07627 114 WQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFE 167 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788888777742 35667888888888888887777655
No 222
>PF11705 RNA_pol_3_Rpc31: DNA-directed RNA polymerase III subunit Rpc31; InterPro: IPR024661 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA polymerase III-specific, and form the functionally distinct groups: (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in Saccharomyces cerevisiae and Homo sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain []. This entry represents the Rpc31 subunit.
Probab=64.20 E-value=26 Score=31.07 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=18.6
Q ss_pred CCCCCccchHHHHHHHHHHHHHHHHhhh
Q 026318 31 PMHFHPMTLEEEIEIQRREMHRIISENR 58 (240)
Q Consensus 31 ~~~p~p~~LEe~La~Q~~EiqrLl~dNq 58 (240)
|.|+++.--|..+.....+++.-+.+=-
T Consensus 42 P~~~~~t~~E~~~v~~~~~lr~~~~~sP 69 (233)
T PF11705_consen 42 PVPLPLTEEERYLVALKRELRERMRDSP 69 (233)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4444555568888888888877765433
No 223
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=64.17 E-value=1e+02 Score=27.15 Aligned_cols=106 Identities=24% Similarity=0.330 Sum_probs=52.1
Q ss_pred HHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 69 RELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDV 148 (240)
Q Consensus 69 qeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL 148 (240)
.-|..++.|+..|...+.....++- .+..+-.+...++.+++ .++-|-..+..-..+|...|.+|..+....-+|+
T Consensus 62 epL~~a~~e~~eL~k~L~~y~kdK~-~L~~~k~rl~~~ek~l~---~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~ev 137 (201)
T PF13851_consen 62 EPLKKAEEEVEELRKQLKNYEKDKQ-SLQNLKARLKELEKELK---DLKWEHEVLEQRFEKLEQERDELYRKFESAIQEV 137 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443332222 23333344444555544 3444444455556666666777766666666666
Q ss_pred HHHHHh-----hhhhHHHHHHHHHHHHHHHHHHHh
Q 026318 149 NRLEAE-----NKQLIAMRADIDGIRSELVEARRA 178 (240)
Q Consensus 149 ~r~~~d-----~qqip~l~aEid~lrqElqr~Raa 178 (240)
+.-.+- -+.+-+|...++.-.-++.-.-++
T Consensus 138 qQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~ 172 (201)
T PF13851_consen 138 QQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAA 172 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543221 144555555555555555544333
No 224
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=63.57 E-value=1e+02 Score=27.13 Aligned_cols=79 Identities=20% Similarity=0.377 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhhhhcc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 026318 97 RELFDRGLKLEVELRAS----EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSEL 172 (240)
Q Consensus 97 Rel~ek~~KmEAelRa~----e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqEl 172 (240)
+.+.+...++|..+... ..+..++..+-..+-+|....+-+..+-+...+++.+.+++ +..+..++++++.+.
T Consensus 106 ~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~---~~~l~~~~~~~e~~F 182 (190)
T PF05266_consen 106 EKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSE---AEALKEEIENAELEF 182 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q ss_pred HHHHHh
Q 026318 173 VEARRA 178 (240)
Q Consensus 173 qr~Raa 178 (240)
+..-+|
T Consensus 183 ~~~~aa 188 (190)
T PF05266_consen 183 QSVAAA 188 (190)
T ss_pred HHHhcC
No 225
>smart00338 BRLZ basic region leucin zipper.
Probab=63.38 E-value=36 Score=24.24 Aligned_cols=35 Identities=26% Similarity=0.577 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRL 151 (240)
Q Consensus 117 k~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~ 151 (240)
+..+..+..+++.|...-.+|..+|..|..++..+
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555554443
No 226
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=62.84 E-value=1.2e+02 Score=27.41 Aligned_cols=61 Identities=16% Similarity=0.224 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 026318 121 VQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEF 181 (240)
Q Consensus 121 ~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey 181 (240)
.+...++..+.+.......++....+++.|.+.=.++--.-+.++|..+.++..+++.++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS~~~~d~~~~~~~~a~~~l~~ 153 (327)
T TIGR02971 93 AKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAVSASDLDSKALKLRTAEEELEE 153 (327)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555566666777777777777765555555566777777666666665553
No 227
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=62.73 E-value=2.4e+02 Score=31.00 Aligned_cols=97 Identities=25% Similarity=0.303 Sum_probs=49.5
Q ss_pred hhhhhhhcchhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318 105 KLEVELRASEPVRAEVVQLRAEVQKLNSS----RQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (240)
Q Consensus 105 KmEAelRa~e~lk~El~Q~r~e~q~L~a~----RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (240)
|.|......+.+|.|+.-+-.++++|... .|.=..+++.+...+..--...--+-.=..|++.++.|.++-=.-.+
T Consensus 488 K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e~~~~~~e~e~si~ql~ 567 (980)
T KOG0980|consen 488 KTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREEEREALRLEAERSINQLE 567 (980)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhh
Confidence 66667777788888888888877776544 44444444444433332111111111111345556666666533333
Q ss_pred hhhhcc-hHHHHHHHHHHHhHH
Q 026318 181 FEKKAN-EEQIEQKQAMENNLI 201 (240)
Q Consensus 181 yEKK~~-~e~~Eq~qaMEknli 201 (240)
.+.+.+ ....-|++.-.+|+|
T Consensus 568 l~~~~~~ea~~tQ~~~~~~~~i 589 (980)
T KOG0980|consen 568 LDSSASTEAGITQLQDDLNDPI 589 (980)
T ss_pred cccccchHHHHHHHHHHhccHH
Confidence 333322 223345555555554
No 228
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=61.32 E-value=1.3e+02 Score=27.54 Aligned_cols=25 Identities=20% Similarity=0.106 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhhhcccccccccc
Q 026318 203 MAREIEKLRAELLNTERRACGLGKI 227 (240)
Q Consensus 203 MarEvEKLRaElanaekRa~~~~~~ 227 (240)
.-.+++..+..+.+..-+|-..|.+
T Consensus 195 ~~a~l~~a~~~l~~~~I~AP~dG~V 219 (346)
T PRK10476 195 REAALAIAELHLEDTTVRAPFDGRV 219 (346)
T ss_pred HHHHHHHHHHHhhcCEEECCCCcEE
Confidence 3344555666667777776655554
No 229
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=60.99 E-value=30 Score=33.67 Aligned_cols=29 Identities=28% Similarity=0.547 Sum_probs=26.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 026318 153 AENKQLIAMRADIDGIRSELVEARRAFEF 181 (240)
Q Consensus 153 ~d~qqip~l~aEid~lrqElqr~Raa~Ey 181 (240)
.++-|||.|+|+++.|++|+.+-+.++--
T Consensus 248 ~~nPqi~~LkarieSlrkql~qe~q~isa 276 (372)
T COG3524 248 PENPQIPGLKARIESLRKQLLQEKQAISA 276 (372)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHhcC
Confidence 47899999999999999999999888753
No 230
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=60.95 E-value=78 Score=24.69 Aligned_cols=70 Identities=17% Similarity=0.277 Sum_probs=40.9
Q ss_pred HHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 78 IHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASE----PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDV 148 (240)
Q Consensus 78 l~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e----~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL 148 (240)
+.+|...|.++..-=+..+- -.++...+|+++.... -|-.||.++.+.+.+|.....|++..+......+
T Consensus 10 l~rL~~aid~LE~~v~~r~~-~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~I 83 (89)
T PF13747_consen 10 LTRLEAAIDRLEKAVDRRLE-RDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETI 83 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666655544443332 2333345555554442 3556777777777777777777777777665544
No 231
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=60.71 E-value=76 Score=24.51 Aligned_cols=38 Identities=16% Similarity=0.388 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRL 151 (240)
Q Consensus 114 e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~ 151 (240)
|.||+|...+-.|+..+...+.++-.++.+-.+|++..
T Consensus 7 d~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~i 44 (79)
T PF08581_consen 7 DAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQI 44 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888888888888877777776543
No 232
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=60.41 E-value=1.4e+02 Score=27.28 Aligned_cols=31 Identities=19% Similarity=0.426 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 120 VVQLRAEVQKLNSSRQELTTQIKGLTKDVNR 150 (240)
Q Consensus 120 l~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r 150 (240)
|...+.|...|...|-..+.+++.+.+|+..
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~ 64 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINT 64 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666666443
No 233
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=59.94 E-value=19 Score=26.33 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhh
Q 026318 118 AEVVQLRAEVQKLN-SSRQELTTQIKGLTKDVNRLEAENK 156 (240)
Q Consensus 118 ~El~Q~r~e~q~L~-a~RQELt~qvq~ltqeL~r~~~d~q 156 (240)
.-|.|.-.|++.+. +.|..+.++|.....+|.+++.+.+
T Consensus 39 ~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 39 ELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444443 6777777787777777777666554
No 234
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=59.26 E-value=81 Score=24.36 Aligned_cols=60 Identities=32% Similarity=0.426 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHh-hhhhhhcchHHHHHHH-------HHHHhHHHHH----HHHHHHHHHHhhhc
Q 026318 158 LIAMRADIDGIRSELVEARRA-FEFEKKANEEQIEQKQ-------AMENNLISMA----REIEKLRAELLNTE 218 (240)
Q Consensus 158 ip~l~aEid~lrqElqr~Raa-~EyEKK~~~e~~Eq~q-------aMEknlisMa----rEvEKLRaElanae 218 (240)
+.++++|.|.+-+|+.-.+.. =|||.|-+ .++--++ .||.+-..|- .||-+||.+|.+..
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~-~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r~ 77 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKIN-SQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQRG 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 345566666666655555543 24555522 2222222 2334444443 47888999987754
No 235
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=59.17 E-value=2.9e+02 Score=31.03 Aligned_cols=147 Identities=21% Similarity=0.294 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHH
Q 026318 39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRA 118 (240)
Q Consensus 39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~ 118 (240)
|+.++.---.=.++|-.+=+-|-+..-.||||...-.+|-++..+.+..+.+=++.-.|-= -+--.-+--.+-+|+
T Consensus 189 LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d----~~ykerlmDs~fykd 264 (1195)
T KOG4643|consen 189 LRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPD----TTYKERLMDSDFYKD 264 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCC----CccchhhhhhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHH
Q 026318 119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAME 197 (240)
Q Consensus 119 El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaME 197 (240)
=+.-++-|-+.|....+.|-.|+|.+ |+++|- ..+-.||=.++|-+.-.|.--+-+.+.-.++.+--.+|+
T Consensus 265 RveelkedN~vLleekeMLeeQLq~l-----rarse~---~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq 335 (1195)
T KOG4643|consen 265 RVEELKEDNRVLLEEKEMLEEQLQKL-----RARSEG---ATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQ 335 (1195)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHH-----Hhcccc---CChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
No 236
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=58.43 E-value=1.7e+02 Score=29.50 Aligned_cols=49 Identities=20% Similarity=0.206 Sum_probs=30.5
Q ss_pred HHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 96 TRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (240)
Q Consensus 96 ~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqe 147 (240)
.+.+.-+..+.|.+|+ -|+.|..|++.|.=...+...-|+.+++.+..+
T Consensus 43 ~~ai~a~~~~~E~~l~---~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~ 91 (459)
T KOG0288|consen 43 SRAIKAKLQEKELELN---RLQEENTQLNEERVREEATEKTLTVDVLIAENL 91 (459)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777665 467777777776666666666666665555444
No 237
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=58.32 E-value=59 Score=34.30 Aligned_cols=69 Identities=28% Similarity=0.379 Sum_probs=52.5
Q ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 026318 106 LEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR 177 (240)
Q Consensus 106 mEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra 177 (240)
++...|-.+.++-||.++.+--|+|++.=.++..++..+.+.+-+.+.|+ -+|+-+|+..+.-+..+|.
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL---~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLEL---SALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHH---HHHHhHHHHHHHHHHHHHh
Confidence 34444555689999999999999999999999999999999988777664 4566777766665555543
No 238
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=58.14 E-value=1.7e+02 Score=27.75 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHhhhcc
Q 026318 199 NLISMAREIEKLRAELLNTER 219 (240)
Q Consensus 199 nlisMarEvEKLRaElanaek 219 (240)
.+-..-.++..+++++++++.
T Consensus 228 ~~~~~~~~l~~~~~~l~~~~~ 248 (421)
T TIGR03794 228 ELETVEARIKEARYEIEELEN 248 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555543
No 239
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=57.81 E-value=2.2e+02 Score=28.85 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=11.5
Q ss_pred HHHHhhHHHHHHHhhhhhhhhhhhhH
Q 026318 69 RELTASKDEIHRLGQIIPKLRADKEA 94 (240)
Q Consensus 69 qeL~aaq~El~~l~~~i~~i~ae~e~ 94 (240)
-+|-+.+.||.-.......+.+|+|.
T Consensus 81 ~qlr~~rtel~~a~~~k~~~e~er~~ 106 (499)
T COG4372 81 PQLRALRTELGTAQGEKRAAETEREA 106 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444454443
No 240
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=57.79 E-value=42 Score=30.83 Aligned_cols=52 Identities=27% Similarity=0.489 Sum_probs=35.0
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 026318 111 RASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (240)
Q Consensus 111 Ra~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (240)
|.++++|.-....+..- .|+.-+|..|.+|.+ +|+.+++.|++|+..+|..|
T Consensus 201 rNN~A~~kSR~~~k~~~-------~e~~~r~~~leken~----------~lr~~v~~l~~el~~~~~~~ 252 (269)
T KOG3119|consen 201 RNNEAVRKSRDKRKQKE-------DEMAHRVAELEKENE----------ALRTQVEQLKKELATLRRLF 252 (269)
T ss_pred hhhHHHHHhhhhHHHHH-------HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 34556666655544422 666777777777754 67778888888888888765
No 241
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=57.69 E-value=1.3e+02 Score=26.14 Aligned_cols=91 Identities=14% Similarity=0.223 Sum_probs=47.6
Q ss_pred HHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHH
Q 026318 50 MHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQK 129 (240)
Q Consensus 50 iqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~ 129 (240)
+++.--.+++|=+.-.+++++|..+..++---..... ..--.|--...+|...+.++.|+..+. ...
T Consensus 10 ~~rr~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~-------~~~~~l~~~~~ri~~m~~gg~~f~i~~------~~~ 76 (158)
T PF09486_consen 10 IQRRRRRERRLRARLAAQRRALAAAEAELAEQQAEVE-------AARQRLRAHDARIDAMMTGGAPFSIDE------YLA 76 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHcCCCCccHHH------HHH
Confidence 3444455666666667777777766665544433332 222222233334444455677776432 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 130 LNSSRQELTTQIKGLTKDVNRLEA 153 (240)
Q Consensus 130 L~a~RQELt~qvq~ltqeL~r~~~ 153 (240)
+...|-.|..+++.+.+++..++.
T Consensus 77 ~~~~r~~l~~~~~~~e~~~a~l~~ 100 (158)
T PF09486_consen 77 LRRYRDVLEERVRAAEAELAALRQ 100 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666665555544
No 242
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=56.41 E-value=1.1e+02 Score=30.57 Aligned_cols=65 Identities=14% Similarity=0.179 Sum_probs=45.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhh--cchHH---HHH----HHHHHHhHHHHHHHHHHHHHHHhh
Q 026318 152 EAENKQLIAMRADIDGIRSELVEARRAFEFEKK--ANEEQ---IEQ----KQAMENNLISMAREIEKLRAELLN 216 (240)
Q Consensus 152 ~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK--~~~e~---~Eq----~qaMEknlisMarEvEKLRaElan 216 (240)
..++-+||.++++|..|+++|...|+-+--... +.+.. ||. .+--|+.|-+-..=+|+=|.|...
T Consensus 310 ~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~sAlaaLE~AR~EA~R 383 (434)
T PRK15178 310 LDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWESALQTLQQGKLQALR 383 (434)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457899999999999999999988877743221 11222 233 334578888888888999988543
No 243
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=55.79 E-value=2.5e+02 Score=29.66 Aligned_cols=90 Identities=17% Similarity=0.272 Sum_probs=41.2
Q ss_pred HHHHHHHHhh--hhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhh---hhHhHHHHHhhhhhhhhhhhcchhhHHHHHH
Q 026318 48 REMHRIISEN--RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRAD---KEAHTRELFDRGLKLEVELRASEPVRAEVVQ 122 (240)
Q Consensus 48 ~EiqrLl~dN--qRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae---~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q 122 (240)
.-|+.||..+ |-+.- .-+=|......++=++-|..++.-++.+ +-..+|+-+++-. ..++.+..|
T Consensus 507 ~~Ik~lL~r~~~qPill-~s~~k~~~p~~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv---------~~Lk~~~e~ 576 (717)
T PF10168_consen 507 KHIKSLLQRSSSQPILL-KSSDKSSSPSPQECLELLSQATKVLREEYIEKQDLAREEIQRRV---------KLLKQQKEQ 576 (717)
T ss_pred HHHHHHhcCCCCCCeec-CCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH
Confidence 3466777654 22220 0001333345666777777777777643 1122334333332 234444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 123 LRAEVQKLNSSRQELTTQIKGLTKD 147 (240)
Q Consensus 123 ~r~e~q~L~a~RQELt~qvq~ltqe 147 (240)
-..+++.|...++.|+.....|...
T Consensus 577 Ql~~L~~l~e~~~~l~~~ae~LaeR 601 (717)
T PF10168_consen 577 QLKELQELQEERKSLRESAEKLAER 601 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433
No 244
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=55.55 E-value=1.5e+02 Score=27.78 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEA 153 (240)
Q Consensus 119 El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~ 153 (240)
+.-....+...+...++.|..+++.....|.+++.
T Consensus 100 ~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 100 EYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344445556667777778888888777777653
No 245
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=55.12 E-value=84 Score=23.28 Aligned_cols=53 Identities=23% Similarity=0.409 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 026318 124 RAEVQKLNSSRQELTTQIKGLTKDVN-RLEAENKQLIAMRADIDGIRSELVEARR 177 (240)
Q Consensus 124 r~e~q~L~a~RQELt~qvq~ltqeL~-r~~~d~qqip~l~aEid~lrqElqr~Ra 177 (240)
.+||+-=.+...||+ +|+.-+..+. +++.--++.-.|.+||+.|+.|+-..|+
T Consensus 7 ~~EirakQ~~~eEL~-kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 7 EAEIRAKQAIQEELT-KVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355554455555554 3554444443 3333445566677777777777766554
No 246
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=55.01 E-value=1.7e+02 Score=26.63 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHH
Q 026318 163 ADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMEN 198 (240)
Q Consensus 163 aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEk 198 (240)
.+++.+....+...+.++...+++...++...+|..
T Consensus 218 ~~~~~l~~~~~~~~a~~~~~~~~~~G~l~R~~Al~~ 253 (301)
T PF14362_consen 218 ARKARLDEARQAKVAEFQAIISANDGFLARLEALWE 253 (301)
T ss_pred HHHHHHHHHHHHHHHHHhHhhccCCCHHHHHHHHHH
Confidence 677777777777777777777888888888888875
No 247
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=55.00 E-value=99 Score=24.06 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 117 RAEVVQLRAEVQKLNSSRQELTTQI 141 (240)
Q Consensus 117 k~El~Q~r~e~q~L~a~RQELt~qv 141 (240)
-..+++++.+.++|...++.|.++.
T Consensus 5 ~~~~q~l~~~~~~l~~~~~~l~~~~ 29 (105)
T cd00632 5 LAQLQQLQQQLQAYIVQRQKVEAQL 29 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544
No 248
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.00 E-value=1.2e+02 Score=28.41 Aligned_cols=34 Identities=21% Similarity=0.503 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (240)
Q Consensus 116 lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~ 149 (240)
+..++..+..|++.|...=.++..+++.+..+..
T Consensus 43 ~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~ 76 (265)
T COG3883 43 LQKEKKNIQNEIESLDNQIEEIQSKIDELQKEID 76 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555543
No 249
>PRK12704 phosphodiesterase; Provisional
Probab=54.99 E-value=2.4e+02 Score=28.48 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 026318 137 LTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRA 178 (240)
Q Consensus 137 Lt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa 178 (240)
|..+-+.|.+....+....+.+-....+|+...+++......
T Consensus 91 L~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~ 132 (520)
T PRK12704 91 LLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEE 132 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333434444444443333334444444444444444444333
No 250
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=54.82 E-value=1.4e+02 Score=26.17 Aligned_cols=67 Identities=24% Similarity=0.210 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcc
Q 026318 140 QIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTER 219 (240)
Q Consensus 140 qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaElanaek 219 (240)
++..+..++.|.+.-.++-..-..+++..+.++..+++. +-+...+++.++..+.+..-
T Consensus 79 ~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~~~---------------------l~~~~~~l~~~~~~~~~~~i 137 (322)
T TIGR01730 79 QLELAQRSFERAERLVKRNAVSQADLDDAKAAVEAAQAD---------------------LEAAKASLASAQLNLRYTEI 137 (322)
T ss_pred HHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHhhccCEE
Confidence 344444555555444444444456666666665544433 23345567777878777777
Q ss_pred cccccccc
Q 026318 220 RACGLGKI 227 (240)
Q Consensus 220 Ra~~~~~~ 227 (240)
+|-..|..
T Consensus 138 ~AP~~G~V 145 (322)
T TIGR01730 138 RAPFDGTI 145 (322)
T ss_pred ECCCCcEE
Confidence 76555543
No 251
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=54.67 E-value=87 Score=26.69 Aligned_cols=35 Identities=26% Similarity=0.553 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 026318 135 QELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSEL 172 (240)
Q Consensus 135 QELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqEl 172 (240)
..+..+++.+.++|.+...| +-+|+...+++..|+
T Consensus 157 ~~~~~ei~~lk~el~~~~~~---~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKE---IEALKKQSEGLQKEY 191 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhc
Confidence 34556666666666654444 335666666666554
No 252
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=54.59 E-value=4.1 Score=40.97 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=0.0
Q ss_pred hhhhhhhhhhHhHHHHHhhhhhhhhhhhcc
Q 026318 84 IIPKLRADKEAHTRELFDRGLKLEVELRAS 113 (240)
Q Consensus 84 ~i~~i~ae~e~q~Rel~ek~~KmEAelRa~ 113 (240)
-+...+-|||.+||++++|.+-+|.|||.-
T Consensus 423 RLr~QQ~eKd~qmksII~RL~~vEeELrre 452 (495)
T PF12004_consen 423 RLRRQQEEKDSQMKSIISRLMAVEEELRRE 452 (495)
T ss_dssp ------------------------------
T ss_pred HHHHHhhhhHHHHHHHHhhhhhhhhhhhhh
Confidence 346788999999999999999999887754
No 253
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=54.43 E-value=3.5e+02 Score=30.21 Aligned_cols=171 Identities=17% Similarity=0.215 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHhhhhhhH-------hhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhH-----hHHHHHhhhhhhhhhh
Q 026318 43 IEIQRREMHRIISENRHAID-------DNTHLQRELTASKDEIHRLGQIIPKLRADKEA-----HTRELFDRGLKLEVEL 110 (240)
Q Consensus 43 La~Q~~EiqrLl~dNqRLAa-------thvaLrqeL~aaq~El~~l~~~i~~i~ae~e~-----q~Rel~ek~~KmEAel 110 (240)
|-.+|.|+..|-.|-+.|-. +-.-|+++......++.++..--. .+..=|+ ..-+.-+.-.+..+..
T Consensus 176 ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~-~~~~Ie~l~~k~~~v~y~~~~~ey~~~k 254 (1072)
T KOG0979|consen 176 LLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERER-KKSKIELLEKKKKWVEYKKHDREYNAYK 254 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchHhhhHHHHHHH
Confidence 45667777777777776653 455566666666666655542211 1111000 0111223445667788
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 026318 111 RASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE----NKQLIAMRADIDGIRSELVEARRAFEFEKKAN 186 (240)
Q Consensus 111 Ra~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d----~qqip~l~aEid~lrqElqr~Raa~EyEKK~~ 186 (240)
.+.+-+|.++.-+--+++.+...+.+|-.++..+..+....+.+ ...+-..-..++.+.++++..-.+.|+=||.-
T Consensus 255 ~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~ 334 (1072)
T KOG0979|consen 255 QAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAA 334 (1072)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999888888888777766666666555543 34555667778888899988888888766532
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcccc
Q 026318 187 EEQIEQKQAMENNLISMAREIEKLRAELLNTERRA 221 (240)
Q Consensus 187 ~e~~Eq~qaMEknlisMarEvEKLRaElanaekRa 221 (240)
- --++++..-...+..++++|.+++.-.
T Consensus 335 ~-------~rq~~i~~~~k~i~~~q~el~~~~~~e 362 (1072)
T KOG0979|consen 335 E-------KRQKRIEKAKKMILDAQAELQETEDPE 362 (1072)
T ss_pred H-------HHHHHHHHHHHHHHHHHhhhhhcCCcc
Confidence 2 234678888888999999999877543
No 254
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=54.41 E-value=4.1 Score=40.39 Aligned_cols=134 Identities=19% Similarity=0.303 Sum_probs=0.0
Q ss_pred hHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 61 IDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQ 140 (240)
Q Consensus 61 AathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~q 140 (240)
...|.+|-|.+-.++.|+--.......-..+..+ -+.=+..+....|+.++|.-||.|...=.=|---
T Consensus 390 ~~~~G~Lv~~iletkk~~e~~~~~~~~~~~~~~~------------~~~~~~~~~~~~ei~~lr~~iQ~l~~s~~PLgk~ 457 (539)
T PF10243_consen 390 EEEHGGLVQKILETKKELEKSANSEEKEEKEQSL------------AASKKERESVEKEIEKLRESIQTLCRSANPLGKL 457 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhcCHHHHHHHHHHHHHhhcccccccccccccc------------hhhhccchhHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 3568888888888887776654433311111111 2233334566677777777776666554444333
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHH----HHHHHHHHhHHHHHHHHHHHHHHHhh
Q 026318 141 IKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQI----EQKQAMENNLISMAREIEKLRAELLN 216 (240)
Q Consensus 141 vq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~----Eq~qaMEknlisMarEvEKLRaElan 216 (240)
+.-+..| |-+|..|++--+.|+...-.++.-|++...+-+ .|+..+|.++.-+-..|-.+||-|.+
T Consensus 458 ~d~iqED----------id~M~~El~~W~~e~~~~~~~l~~e~~~t~~~~~pl~~~L~ele~~I~~~~~~i~~~ka~Il~ 527 (539)
T PF10243_consen 458 MDYIQED----------IDSMQKELEMWRSEYRQHAEALQEEQSITDEALEPLKAQLAELEQQIKDQQDKICAVKANILK 527 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3222223 345555555555555566666666776555444 45566666665555555555555544
No 255
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=54.15 E-value=43 Score=23.27 Aligned_cols=35 Identities=20% Similarity=0.427 Sum_probs=21.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDV 148 (240)
Q Consensus 114 e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL 148 (240)
+.+|+.-..+.+|-..|....+.|.++|+.++..|
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666666666666666666666666665544
No 256
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=53.81 E-value=3.6e+02 Score=30.18 Aligned_cols=46 Identities=13% Similarity=0.256 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhh
Q 026318 43 IEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKL 88 (240)
Q Consensus 43 La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i 88 (240)
|=.+--.++.+-..+++.++++-.-++.|..-..+|--+...|.+.
T Consensus 202 lfmkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~ 247 (1074)
T KOG0250|consen 202 LFMKATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEE 247 (1074)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3355556666667778888888877777777777776665555433
No 257
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=53.80 E-value=62 Score=22.80 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318 136 ELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (240)
Q Consensus 136 ELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (240)
.|.+++..+++= +-.|+.++..-.+|+..+|.+|+
T Consensus 5 ~l~~ql~~l~~~----------l~elk~~l~~Q~kE~~~LRntI~ 39 (45)
T PF11598_consen 5 QLIKQLSELNQM----------LQELKELLRQQIKETRFLRNTIM 39 (45)
T ss_dssp HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666555 34677888888999999999886
No 258
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=53.52 E-value=1e+02 Score=28.88 Aligned_cols=92 Identities=23% Similarity=0.323 Sum_probs=50.6
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHHHHHH---hhhhh
Q 026318 110 LRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN----KQLIAMRADIDGIRSELVEARR---AFEFE 182 (240)
Q Consensus 110 lRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~----qqip~l~aEid~lrqElqr~Ra---a~EyE 182 (240)
.+.++|++..+.++..+..+....-++...+++.+...|+.++.+. ++.-.|..+++....-+.|+.. .+.-|
T Consensus 213 ~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E 292 (344)
T PF12777_consen 213 NKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGE 292 (344)
T ss_dssp CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcch
Confidence 4555677777766655555544444444444444444444444332 2233455566666666666554 44567
Q ss_pred hhcchHHHHHHHHHHHhHH
Q 026318 183 KKANEEQIEQKQAMENNLI 201 (240)
Q Consensus 183 KK~~~e~~Eq~qaMEknli 201 (240)
+.--.+.+++...-.+|++
T Consensus 293 ~~RW~~~~~~l~~~~~~l~ 311 (344)
T PF12777_consen 293 KERWSEQIEELEEQLKNLV 311 (344)
T ss_dssp HHCCHCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhcccH
Confidence 7777666666655555554
No 259
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=53.30 E-value=1.1e+02 Score=27.62 Aligned_cols=66 Identities=15% Similarity=0.200 Sum_probs=44.9
Q ss_pred Hhhhhhhhhhhhcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHH
Q 026318 100 FDRGLKLEVELRAS-EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE-NKQLIAMRADI 165 (240)
Q Consensus 100 ~ek~~KmEAelRa~-e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d-~qqip~l~aEi 165 (240)
-++..+++...... ..++....-+.++..++...=+.+++.|..++.++..+.+. .+..|.+-..+
T Consensus 102 ~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~~l~~~~~~~~~~~~~~~~~flsq~ 169 (256)
T PF14932_consen 102 SQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQLLGEVSKLASELAHAHSGQQQNPPVFLSQM 169 (256)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCchhhhC
Confidence 34445555543322 34444445566788889999999999999999999987764 45677766554
No 260
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=53.30 E-value=53 Score=35.09 Aligned_cols=68 Identities=29% Similarity=0.414 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----HhhhhhhhcchHHHHHHHHHHHhHHHHHHH
Q 026318 131 NSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEAR----RAFEFEKKANEEQIEQKQAMENNLISMARE 206 (240)
Q Consensus 131 ~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~R----aa~EyEKK~~~e~~Eq~qaMEknlisMarE 206 (240)
.+++.=|++|||.|..|-+ +|.+|- --...+| +.+|+-.|.+--++...++=|+.|.++++|
T Consensus 381 ~~v~~gl~aq~~al~~era----------~l~a~w----~rv~egrr~v~~mv~~grk~~~~~~~e~~ar~~~l~~v~re 446 (828)
T PF04094_consen 381 STVREGLNAQVQALAAERA----------ALDAEW----ARVDEGRRAVDAMVEVGRKAHQAHLAEIQAREETLDSVMRE 446 (828)
T ss_pred hHHhhhhhhHHHHHHHHHH----------HHHHHH----HHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888887743 222222 2333455 678899999999999999999999999999
Q ss_pred HHHHHH
Q 026318 207 IEKLRA 212 (240)
Q Consensus 207 vEKLRa 212 (240)
+|.=|.
T Consensus 447 ~eeer~ 452 (828)
T PF04094_consen 447 TEEERQ 452 (828)
T ss_pred HHHHHH
Confidence 998775
No 261
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=52.87 E-value=1.3e+02 Score=24.79 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHH
Q 026318 43 IEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHR 80 (240)
Q Consensus 43 La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~ 80 (240)
|-.|.+.|+|||.-+.-=++-.+.+-++|.+-+.++..
T Consensus 2 lK~riRdieRLL~r~~Lp~~vR~~~Er~L~~L~~~l~~ 39 (114)
T PF10153_consen 2 LKKRIRDIERLLKRKDLPADVRVEKERELEALKRELEE 39 (114)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 55678899999988744477888999999988888765
No 262
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=52.84 E-value=76 Score=22.07 Aligned_cols=10 Identities=50% Similarity=0.770 Sum_probs=5.9
Q ss_pred HHHHHHHHHH
Q 026318 165 IDGIRSELVE 174 (240)
Q Consensus 165 id~lrqElqr 174 (240)
||.+++|+.+
T Consensus 28 IeA~~~eL~r 37 (40)
T PF08776_consen 28 IEAIRQELSR 37 (40)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 4556666654
No 263
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=52.83 E-value=81 Score=23.89 Aligned_cols=42 Identities=26% Similarity=0.319 Sum_probs=22.7
Q ss_pred chHHHHHH-------HHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHH
Q 026318 38 TLEEEIEI-------QRREMHRIISENRHAIDDNTHLQRELTASKDEIH 79 (240)
Q Consensus 38 ~LEe~La~-------Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~ 79 (240)
-||.|+.. -..|+..|-..|..|...+..|+++....++|-.
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~ 56 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERN 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 35666554 4445555555555555555555555555554443
No 264
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=52.78 E-value=3.6e+02 Score=29.91 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=25.8
Q ss_pred HHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 97 RELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKG 143 (240)
Q Consensus 97 Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ 143 (240)
+.+..+..|+..++.+.|..-.|+.++.---|+....=..||++.|.
T Consensus 197 ~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ 243 (1265)
T KOG0976|consen 197 KALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQT 243 (1265)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 45666777777777777766666555444333333333334444433
No 265
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=52.72 E-value=72 Score=26.40 Aligned_cols=42 Identities=26% Similarity=0.373 Sum_probs=35.1
Q ss_pred cchHHHHHHHHHHHHHHHHh--hhhhhHhhHHHHHHHHhhHHHH
Q 026318 37 MTLEEEIEIQRREMHRIISE--NRHAIDDNTHLQRELTASKDEI 78 (240)
Q Consensus 37 ~~LEe~La~Q~~EiqrLl~d--NqRLAathvaLrqeL~aaq~El 78 (240)
-.|=++|...+..|..+=.. |..++.++..|+.+|.++..-+
T Consensus 70 LALLDElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~ae~~~ 113 (139)
T PF13935_consen 70 LALLDELERAQQRIAELEQECENEDIALDVQKLRVELEAAEKRI 113 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888888854 9999999999999999998766
No 266
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=52.66 E-value=90 Score=24.81 Aligned_cols=51 Identities=25% Similarity=0.410 Sum_probs=38.3
Q ss_pred HHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 99 LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR 150 (240)
Q Consensus 99 l~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r 150 (240)
.-.|..++|.+++.. |=+.|+..++.++-++...-+.|.+++++++.-+..
T Consensus 47 ~~~Rl~~lE~~l~~L-Pt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~l 97 (106)
T PF10805_consen 47 HDRRLQALETKLEHL-PTRDDVHDLQLELAELRGELKELSARLQGVSHQLDL 97 (106)
T ss_pred HHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 346777788887765 557888888888888888888888888888765543
No 267
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=52.60 E-value=1.4e+02 Score=25.21 Aligned_cols=85 Identities=13% Similarity=0.219 Sum_probs=54.9
Q ss_pred hhhhhhhhhhhcchhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 026318 101 DRGLKLEVELRASEPVRAEVVQLRAEV-QKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (240)
Q Consensus 101 ek~~KmEAelRa~e~lk~El~Q~r~e~-q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (240)
+|-.++..++...+..+.+......+. ++|..++++-..-+....++-.+...+. +-..+.|.+ +-+..++..+
T Consensus 49 ~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~--~~~A~~ea~---~~~~~A~~~I 123 (173)
T PRK13453 49 KRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQI--IHEANVRAN---GMIETAQSEI 123 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH---HHHHHHHHHH
Confidence 556667777777777777777777776 4677777777776666666654433322 233344444 3456688899
Q ss_pred hhhhhcchHHH
Q 026318 180 EFEKKANEEQI 190 (240)
Q Consensus 180 EyEKK~~~e~~ 190 (240)
+.|++.....+
T Consensus 124 ~~ek~~a~~~l 134 (173)
T PRK13453 124 NSQKERAIADI 134 (173)
T ss_pred HHHHHHHHHHH
Confidence 99888766544
No 268
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=52.44 E-value=1.6e+02 Score=25.71 Aligned_cols=47 Identities=23% Similarity=0.379 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHHHHHHHhh
Q 026318 133 SRQELTTQIKGLTKDVNRLEAENKQLIAM-RADIDGIRSELVEARRAF 179 (240)
Q Consensus 133 ~RQELt~qvq~ltqeL~r~~~d~qqip~l-~aEid~lrqElqr~Raa~ 179 (240)
.|..+..+++.+.+++..++++.+..-.. -..|+.+++++..++.+.
T Consensus 104 eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~a 151 (188)
T PF03962_consen 104 EREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAA 151 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555544422111 123555555555555554
No 269
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=52.42 E-value=2.5e+02 Score=27.90 Aligned_cols=136 Identities=16% Similarity=0.261 Sum_probs=66.1
Q ss_pred HHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhh-hhhhhcch--hhHHHHH-HHHHHHHHHHHHHHHHHHHH-
Q 026318 67 LQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKL-EVELRASE--PVRAEVV-QLRAEVQKLNSSRQELTTQI- 141 (240)
Q Consensus 67 LrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~Km-EAelRa~e--~lk~El~-Q~r~e~q~L~a~RQELt~qv- 141 (240)
+.--+..+..++..|..-+..++++.+..+...+++-.+= -..++.-. .++..+. +-..-..++...+.+|....
T Consensus 249 ~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~e~~~~~~~~~~~~le~~~~~~~~~~~~e~~~~~~~l~~~~~ 328 (582)
T PF09731_consen 249 LNSLIAHAKERIDALQKELAELKEEEEEELERALEEQREELLSKLREELEQELEEKRAELEEELREEFEREREELEEKYE 328 (582)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677788888888888888887776665555443320 11111100 0110000 00111112233333333322
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-----HHHHHhhhhhhhcchHHHHHH----HHHHHhHHHHH
Q 026318 142 KGLTKDVNRLEAENKQLIAMRADIDGIRSEL-----VEARRAFEFEKKANEEQIEQK----QAMENNLISMA 204 (240)
Q Consensus 142 q~ltqeL~r~~~d~qqip~l~aEid~lrqEl-----qr~Raa~EyEKK~~~e~~Eq~----qaMEknlisMa 204 (240)
+.|.++|.+...... -.|+.++.....|+ +.....++-|+.++...++.+ +.+|+-+.+..
T Consensus 329 ~~L~~eL~~~~~~~~--~~l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~ 398 (582)
T PF09731_consen 329 EELRQELKRQEEAHE--EHLKNELREQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALEEALDARS 398 (582)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223334444433322 22445555555555 334778888888887777644 45565554443
No 270
>PRK01156 chromosome segregation protein; Provisional
Probab=52.36 E-value=3e+02 Score=28.80 Aligned_cols=16 Identities=6% Similarity=0.144 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 026318 135 QELTTQIKGLTKDVNR 150 (240)
Q Consensus 135 QELt~qvq~ltqeL~r 150 (240)
..+..++..+..++.+
T Consensus 684 ~~l~~~l~~l~~~~~~ 699 (895)
T PRK01156 684 KKSRKALDDAKANRAR 699 (895)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 271
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=52.07 E-value=93 Score=25.18 Aligned_cols=43 Identities=21% Similarity=0.283 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 026318 136 ELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEF 181 (240)
Q Consensus 136 ELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey 181 (240)
+|..++..+..++..++.. +-.|..|-..|+-|-+++|.-+.-
T Consensus 12 ~le~~l~~l~~~~~~LK~~---~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 12 QLEQQLGQLLEELEELKKQ---LQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433322 334455555666666666665543
No 272
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=51.91 E-value=1.1e+02 Score=28.05 Aligned_cols=51 Identities=27% Similarity=0.459 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH----HHHHHHHHhhhhhhh
Q 026318 134 RQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIR----SELVEARRAFEFEKK 184 (240)
Q Consensus 134 RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lr----qElqr~Raa~EyEKK 184 (240)
-.+|-...+.+.++-++...+.+++-+=++++..+. +++.-.|.+|+-||-
T Consensus 47 Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~~~e~~r~~fekekq 101 (228)
T PRK06800 47 QKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIEAARQQFQKEQQ 101 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333344433344443333 456667777777765
No 273
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=51.77 E-value=1.3e+02 Score=25.49 Aligned_cols=66 Identities=12% Similarity=0.062 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHH---HhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhh
Q 026318 39 LEEEIEIQRREMHRIISENRHAIDDNTHLQREL---TASKDEIHRLGQIIPKLRADKEAHTRELFDRGL 104 (240)
Q Consensus 39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL---~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~ 104 (240)
+-..++.+...+...-.+|..+..+.-.|.++. ..+|..|+.........-+.++.+|++|++-..
T Consensus 24 l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe 92 (135)
T TIGR03495 24 ARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENE 92 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 556777888888888888888888888888887 557777777777888887888888887776543
No 274
>PF15463 ECM11: Extracellular mutant protein 11
Probab=51.69 E-value=1.1e+02 Score=25.25 Aligned_cols=48 Identities=19% Similarity=0.296 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHH
Q 026318 124 RAEVQKLNSSRQELTTQIKGLTKDVNRLE-AENKQLIAMRADIDGIRSE 171 (240)
Q Consensus 124 r~e~q~L~a~RQELt~qvq~ltqeL~r~~-~d~qqip~l~aEid~lrqE 171 (240)
..=+++|...|+++.-.++.++.++++-. +-..+.-.+...++.|++.
T Consensus 86 ~~l~~kl~~~R~~~r~~~~~fe~eI~~R~eav~~~~~~l~~kL~~mk~~ 134 (139)
T PF15463_consen 86 SELMQKLKEARRKLRKKFAVFEDEINRRAEAVRAQGEQLDRKLEKMKEG 134 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567999999999999999999998544 4445666666666666653
No 275
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=51.67 E-value=3.9e+02 Score=29.88 Aligned_cols=122 Identities=16% Similarity=0.221 Sum_probs=58.5
Q ss_pred CCCCccchHHHHH-----HHHHHHHHHHHhhhhh---------hHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhH--h
Q 026318 32 MHFHPMTLEEEIE-----IQRREMHRIISENRHA---------IDDNTHLQRELTASKDEIHRLGQIIPKLRADKEA--H 95 (240)
Q Consensus 32 ~~p~p~~LEe~La-----~Q~~EiqrLl~dNqRL---------AathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~--q 95 (240)
..|.+.-||+=|. .+..=|..==-=||-| ..+..-||+||.||..= .+-.-++.=. +
T Consensus 367 iSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReK-------nGvyisee~y~~~ 439 (1041)
T KOG0243|consen 367 ISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREK-------NGVYISEERYTQE 439 (1041)
T ss_pred eCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhh-------CceEechHHHHHH
Confidence 3466777898775 3333343322334433 45666777777777632 2222222222 2
Q ss_pred HHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 026318 96 TRELFDRGLKLEVELRASEPVRAEVVQLRAEVQ-------KLNSSRQELTTQIKGLTKDVNRLEAENKQLIA 160 (240)
Q Consensus 96 ~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q-------~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~ 160 (240)
.++.-.+..++|.--.-+++++..+.++..... .|....+.|-.+++.-.+||.....+.+++-.
T Consensus 440 e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~ 511 (1041)
T KOG0243|consen 440 EKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKA 511 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223333333333334456666666666666 33333344444444555555555555544433
No 276
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=51.64 E-value=2.2e+02 Score=27.63 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 026318 131 NSSRQELTTQIKGLTKDVNRLEAEN 155 (240)
Q Consensus 131 ~a~RQELt~qvq~ltqeL~r~~~d~ 155 (240)
.+.||+|.+.+.....+-.+++.|.
T Consensus 82 gterqdLaa~i~etkeeNlkLrTd~ 106 (389)
T KOG4687|consen 82 GTERQDLAADIEETKEENLKLRTDR 106 (389)
T ss_pred cchhhHHHHHHHHHHHHhHhhhHHH
Confidence 3344444444444444444444443
No 277
>PRK11020 hypothetical protein; Provisional
Probab=51.40 E-value=85 Score=26.36 Aligned_cols=56 Identities=13% Similarity=0.287 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 026318 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFE 182 (240)
Q Consensus 115 ~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyE 182 (240)
.+|+|+++++- +|...|--|.+ ...+.|.--|..+..|++.|-.||.+++..-.|+
T Consensus 2 ~~K~Eiq~L~d---rLD~~~~Klaa---------a~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~ 57 (118)
T PRK11020 2 VEKNEIKRLSD---RLDAIRHKLAA---------ASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQK 57 (118)
T ss_pred cHHHHHHHHHH---HHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666655 44444433332 2445677788999999999999999998765554
No 278
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=51.30 E-value=53 Score=26.00 Aligned_cols=57 Identities=26% Similarity=0.349 Sum_probs=46.5
Q ss_pred hhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 87 KLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGL 144 (240)
Q Consensus 87 ~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~l 144 (240)
.+-.+=-..+..+...+..+|+.|+. +.=+.++...=.++|.....|=+||+++|-+
T Consensus 40 ~~~~~iT~~f~~~S~ei~~ie~~L~~-~~~~~~la~~i~~lQ~~Ek~KL~lT~~lQ~l 96 (97)
T PF14966_consen 40 QLCHEITQEFSAISKEILAIEAELRD-EHERPDLAELIRELQEQEKEKLELTAKLQVL 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344456677888889999999996 6677888888889999999999999999865
No 279
>PRK07248 hypothetical protein; Provisional
Probab=50.66 E-value=1.1e+02 Score=23.13 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=50.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHH
Q 026318 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQ 192 (240)
Q Consensus 113 ~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq 192 (240)
.+.+|.++.++-.++-+|.+.|-.++.+|..+.++-. .|....+.+.---+- .+...+ ..+..+.
T Consensus 3 L~~lR~~ID~iD~~i~~Ll~~R~~l~~~I~~~K~~~~--------~~v~d~~RE~~vl~~--~~~~~~--~~~~~~~--- 67 (87)
T PRK07248 3 LEEIRQEIDQIDDQLVALLEKRMALVEQVVAYKKATG--------KPVLDTKREQVILDK--VSSLVE--NKAYQET--- 67 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CCCCChHHHHHHHHH--HHHHcc--cCCCHHH---
Confidence 4578999999999999999999999999977666532 455554444322222 222111 2333332
Q ss_pred HHHHHHhHHHHHHHHHH
Q 026318 193 KQAMENNLISMAREIEK 209 (240)
Q Consensus 193 ~qaMEknlisMarEvEK 209 (240)
...+=+.+++.++.+++
T Consensus 68 i~~if~~I~~~S~~~Q~ 84 (87)
T PRK07248 68 IVATFKDIMKRSRDYQT 84 (87)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455666666666543
No 280
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=50.65 E-value=1.8e+02 Score=25.76 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=22.1
Q ss_pred HhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhh
Q 026318 55 SENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRAD 91 (240)
Q Consensus 55 ~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae 91 (240)
.-|..|-+.+-.|.++|...+++++.++..-..-+.+
T Consensus 136 ~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~ 172 (221)
T PF05700_consen 136 IHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEE 172 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666666666544443333
No 281
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=50.58 E-value=3.5e+02 Score=29.05 Aligned_cols=91 Identities=18% Similarity=0.311 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------hhhHHHHHHHHHHHHHHHHHHHhh
Q 026318 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN------------------KQLIAMRADIDGIRSELVEARRAF 179 (240)
Q Consensus 118 ~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~------------------qqip~l~aEid~lrqElqr~Raa~ 179 (240)
.++.....+++.+...-+|+...+..|..+|.-++.-+ .+++.+.+|+..++.-+..+-.-|
T Consensus 610 ~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~El 689 (769)
T PF05911_consen 610 MELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEEL 689 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555666666666666665433211 234556788888888888888888
Q ss_pred hhhhhcchHHHHHHHHHHHhHHHHHHHHH
Q 026318 180 EFEKKANEEQIEQKQAMENNLISMAREIE 208 (240)
Q Consensus 180 EyEKK~~~e~~Eq~qaMEknlisMarEvE 208 (240)
+.||-...|+.-.-+.+|-.|-++.++..
T Consensus 690 e~er~~~~e~~~kc~~Le~el~r~~~~~~ 718 (769)
T PF05911_consen 690 EKERALSEELEAKCRELEEELERMKKEES 718 (769)
T ss_pred HHHHhcchhhhhHHHHHHHHHHhhhcccc
Confidence 88888888888888888877777776653
No 282
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=50.55 E-value=1.2e+02 Score=26.24 Aligned_cols=60 Identities=15% Similarity=0.225 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 026318 120 VVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEF 181 (240)
Q Consensus 120 l~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey 181 (240)
+.+++.+..+....-.-|.+.|+.....|..+.+. .-+.+.-||..+.+=+.|||.|+++
T Consensus 104 ~~~Lyq~L~~hqe~erRL~~mi~~~e~~l~~~~~~--~~~~lq~ei~a~e~RL~RCr~Ai~~ 163 (173)
T PF07445_consen 104 IHQLYQRLAQHQEYERRLLAMIQEREQQLEQAQSF--EQQQLQQEILALEQRLQRCRQAIEK 163 (173)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555566777777766667766666 5677888999999999999999975
No 283
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=50.49 E-value=69 Score=32.41 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 130 LNSSRQELTTQIKGLTKDVNRLEA 153 (240)
Q Consensus 130 L~a~RQELt~qvq~ltqeL~r~~~ 153 (240)
|.+.|+++..+.+.+..++++.+.
T Consensus 107 v~~~~~~~~~~~~ql~~~~~~~~~ 130 (472)
T TIGR03752 107 VQSETQELTKEIEQLKSERQQLQG 130 (472)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHH
Confidence 445556666555555555444433
No 284
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=50.24 E-value=3.4e+02 Score=28.79 Aligned_cols=11 Identities=27% Similarity=0.613 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 026318 162 RADIDGIRSEL 172 (240)
Q Consensus 162 ~aEid~lrqEl 172 (240)
+.|++.+-.++
T Consensus 578 ~~~~~~~i~~l 588 (771)
T TIGR01069 578 KKEVESIIREL 588 (771)
T ss_pred HHHHHHHHHHH
Confidence 33444443333
No 285
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=49.93 E-value=15 Score=41.33 Aligned_cols=15 Identities=13% Similarity=-0.009 Sum_probs=6.9
Q ss_pred CCCCccc-hHHHHHHH
Q 026318 32 MHFHPMT-LEEEIEIQ 46 (240)
Q Consensus 32 ~~p~p~~-LEe~La~Q 46 (240)
+||+|.+ ++.|-..|
T Consensus 26 pPppPg~~~~~r~~k~ 41 (2365)
T COG5178 26 PPPPPGVNVKKRSRKQ 41 (2365)
T ss_pred CccCCCcchhhhcccc
Confidence 3444444 55554433
No 286
>PF05465 Halo_GVPC: Halobacterial gas vesicle protein C (GVPC) repeat; InterPro: IPR008639 This family consists of Halobacterium gas vesicle protein C sequences which are thought to confer stability to the gas vesicle membranes [,].; GO: 0031412 gas vesicle organization, 0031411 gas vesicle
Probab=49.90 E-value=22 Score=23.17 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Q 026318 158 LIAMRADIDGIRSELVEARRAFE 180 (240)
Q Consensus 158 ip~l~aEid~lrqElqr~Raa~E 180 (240)
|..|.++|+.+|.|+.-.+.+|+
T Consensus 1 V~~l~a~I~~~r~~f~~~~~aF~ 23 (32)
T PF05465_consen 1 VSDLLAAIAEFREEFDDTQDAFE 23 (32)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999986
No 287
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=49.70 E-value=5.5 Score=42.09 Aligned_cols=104 Identities=23% Similarity=0.342 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHH
Q 026318 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK 193 (240)
Q Consensus 114 e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~ 193 (240)
+.|..+|..=+-.-..+...++.|-++|..|..-|..+. +.-....-.+..++..+.-+...+|-.....-+..++.
T Consensus 528 ~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n---~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~ 604 (859)
T PF01576_consen 528 ESLEAELEEERKERAEALREKKKLESDLNELEIQLDHAN---RANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQL 604 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 444444443333333455566666666666654444322 22333444456666666666677788888888999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhhccc
Q 026318 194 QAMENNLISMAREIEKLRAELLNTERR 220 (240)
Q Consensus 194 qaMEknlisMarEvEKLRaElanaekR 220 (240)
..+|+.+-.+..|++-++..+..+++-
T Consensus 605 ~~~e~r~~~l~~elee~~~~~~~a~r~ 631 (859)
T PF01576_consen 605 AVSERRLRALQAELEELREALEQAERA 631 (859)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887654
No 288
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=49.66 E-value=1.1e+02 Score=22.97 Aligned_cols=44 Identities=14% Similarity=0.338 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 026318 130 LNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFE 182 (240)
Q Consensus 130 L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyE 182 (240)
|...+++|..++....++. .-.|.+.++.+.+.+..++.+++|=
T Consensus 55 L~~~e~~ll~~l~~~~~~~---------~~~l~~q~~~l~~~l~~l~~~~~~~ 98 (127)
T smart00502 55 LNKRKKQLLEDLEEQKENK---------LKVLEQQLESLTQKQEKLSHAINFT 98 (127)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555554444432 2345556666666666666666664
No 289
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=49.63 E-value=5.5 Score=42.08 Aligned_cols=139 Identities=20% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhh---hhHhHHHHHhhhhhhhhhhhcchhhHH
Q 026318 42 EIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRAD---KEAHTRELFDRGLKLEVELRASEPVRA 118 (240)
Q Consensus 42 ~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae---~e~q~Rel~ek~~KmEAelRa~e~lk~ 118 (240)
+|..-..++..+-..+..|=-+.-.|..|+..+.-+|...+..+..+... -|.++-++-.+ .+...-..+.+..
T Consensus 329 ~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~---~~~~~~e~d~~q~ 405 (859)
T PF01576_consen 329 KLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAK---VEELQAERDAAQR 405 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 33333344444444555555666667777777777777766655443321 11222222222 2222222234444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 026318 119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEK 183 (240)
Q Consensus 119 El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEK 183 (240)
|...+.+++-+|...-.++..++..+..+...++.++.-+-.-..+-..-.+++.+.+..+|-|+
T Consensus 406 e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~ 470 (859)
T PF01576_consen 406 EARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEK 470 (859)
T ss_dssp -----------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHH
Confidence 44445555555555555555555555544444444443333323332233344444444444443
No 290
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=49.39 E-value=1.3e+02 Score=29.89 Aligned_cols=118 Identities=19% Similarity=0.264 Sum_probs=47.0
Q ss_pred HHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcc--------hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 68 QRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRAS--------EPVRAEVVQLRAEVQKLNSSRQELTT 139 (240)
Q Consensus 68 rqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~--------e~lk~El~Q~r~e~q~L~a~RQELt~ 139 (240)
..|+...++||..|.+.-.+.+.+--.-|-.+.+++.++=. -+. --|-..-..+..+.+.|.+-=-+|..
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~--~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD 227 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKS--ASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQD 227 (424)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777776677777777665433 111 11222333444455566666666666
Q ss_pred HHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcch
Q 026318 140 QIKGLTKDVNR--LEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANE 187 (240)
Q Consensus 140 qvq~ltqeL~r--~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~ 187 (240)
-|..|.+|+.. .+...+|+-.+..+|+.+..++...-..|.-||-.--
T Consensus 228 ~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~Wk 277 (424)
T PF03915_consen 228 LVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWK 277 (424)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 66666666653 4456788999999999999999998888888876443
No 291
>PRK15396 murein lipoprotein; Provisional
Probab=48.67 E-value=74 Score=24.65 Aligned_cols=10 Identities=40% Similarity=0.557 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 026318 120 VVQLRAEVQK 129 (240)
Q Consensus 120 l~Q~r~e~q~ 129 (240)
+.|+.++|+.
T Consensus 27 vd~LssqV~~ 36 (78)
T PRK15396 27 IDQLSSDVQT 36 (78)
T ss_pred HHHHHHHHHH
Confidence 3343444433
No 292
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=48.33 E-value=2.1e+02 Score=25.93 Aligned_cols=85 Identities=15% Similarity=0.104 Sum_probs=44.4
Q ss_pred hhhhhhhhhhhcchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 026318 101 DRGLKLEVELRASEPVRAEVVQLRAEVQK-LNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (240)
Q Consensus 101 ek~~KmEAelRa~e~lk~El~Q~r~e~q~-L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (240)
+|-.++..++...+..+.|..+...+.++ |...+++-..-+....++-.+...+ -+-.-+.|.+.+ ...+|..+
T Consensus 36 eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~--il~~A~~ea~~~---~~~a~~~i 110 (250)
T PRK14474 36 KRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQH--LLNEAREDVATA---RDEWLEQL 110 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH---HHHHHHHH
Confidence 44455666666666666666665555432 3444444444444444443332222 133444555444 35677788
Q ss_pred hhhhhcchHHH
Q 026318 180 EFEKKANEEQI 190 (240)
Q Consensus 180 EyEKK~~~e~~ 190 (240)
+.||+.....+
T Consensus 111 e~Ek~~a~~~L 121 (250)
T PRK14474 111 EREKQEFFKAL 121 (250)
T ss_pred HHHHHHHHHHH
Confidence 88887655544
No 293
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=48.19 E-value=1.6e+02 Score=24.61 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026318 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN 155 (240)
Q Consensus 114 e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~ 155 (240)
+..|.++.+ .|...-..+-.+++.|.-+..|+-++.
T Consensus 15 e~~K~~l~~------~l~~~i~~~d~el~QLefq~kr~~~e~ 50 (131)
T PF11068_consen 15 EKWKEELLQ------ELQEQIQQLDQELQQLEFQGKRMIKEI 50 (131)
T ss_dssp HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555544 333333444444444444444444444
No 294
>PHA02414 hypothetical protein
Probab=48.02 E-value=82 Score=26.00 Aligned_cols=73 Identities=19% Similarity=0.311 Sum_probs=56.4
Q ss_pred hhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHH
Q 026318 91 DKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENK-----QLIAMRADI 165 (240)
Q Consensus 91 e~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~q-----qip~l~aEi 165 (240)
|.|-+|-.|+.++..+|.-+.-++-... ++-..|..+=.||-.=|-++.+|++ .+++.| ||.-|..-|
T Consensus 1 ~~D~~in~Lv~~v~~ledKiQ~Gelt~k------gdn~eL~~av~ELRdivvslDKd~A-v~sEKqshi~yQi~~Lee~i 73 (111)
T PHA02414 1 EMDKEINNLVSQVETLEDKIQEGELTDK------GDNKELEVAVAELRDIVVSLDKDVA-VNSEKQSHIYYQIERLEEKI 73 (111)
T ss_pred CcchHHHHHHHHHHHHHHHHhcCccccC------CchHHHHHHHHHHHHHHHHhhhHhh-hhHHHhhHHHHHHHHHHHHH
Confidence 4577888999999999998888876653 5888899999999999999999987 455555 555566666
Q ss_pred HHHHH
Q 026318 166 DGIRS 170 (240)
Q Consensus 166 d~lrq 170 (240)
+.|++
T Consensus 74 ~aL~~ 78 (111)
T PHA02414 74 SALAE 78 (111)
T ss_pred HHHHh
Confidence 66554
No 295
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=48.00 E-value=1.5e+02 Score=24.05 Aligned_cols=64 Identities=19% Similarity=0.236 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (240)
Q Consensus 114 e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (240)
+.+-.++.+...-+.++...-.--..+++...++-.+.... |-.++.+|+.|+.+|..++....
T Consensus 49 e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~---i~~~k~~ie~lk~~L~~ak~~r~ 112 (139)
T PF05615_consen 49 ERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQE---IEQAKKEIEELKEELEEAKRVRQ 112 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666655555555444443333333333333322222 33566677777777777665543
No 296
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=47.82 E-value=1.9e+02 Score=25.30 Aligned_cols=116 Identities=22% Similarity=0.274 Sum_probs=66.8
Q ss_pred HHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 026318 96 TRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEA 175 (240)
Q Consensus 96 ~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~ 175 (240)
+-+|-+-..+||.|-+-.+.|-.=-.-+|........+=+-|+..++.+|.|+.+++.+..+ .=...+.|-...
T Consensus 59 s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~------ke~~~~~ee~~~ 132 (182)
T PF15035_consen 59 SPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQ------KEAEWREEEENF 132 (182)
T ss_pred cccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 44556677788888887777322222233333333333344455555555555544433221 113455666666
Q ss_pred HHhhhhhhhcchHHHHHHHHHHHhHHHH----HHHHHHHHHHHhhh
Q 026318 176 RRAFEFEKKANEEQIEQKQAMENNLISM----AREIEKLRAELLNT 217 (240)
Q Consensus 176 Raa~EyEKK~~~e~~Eq~qaMEknlisM----arEvEKLRaElana 217 (240)
-.-|.-|.+.-..+-.|..+.-.++.-| -+.+.++|+|++..
T Consensus 133 ~~y~~~eh~rll~LWr~v~~lRr~f~elr~~TerdL~~~r~e~~r~ 178 (182)
T PF15035_consen 133 NQYLSSEHSRLLSLWREVVALRRQFAELRTATERDLSDMRAEFART 178 (182)
T ss_pred HhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6666677777777777777777777655 35666788887754
No 297
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=47.76 E-value=1.7e+02 Score=24.63 Aligned_cols=76 Identities=21% Similarity=0.380 Sum_probs=46.0
Q ss_pred HHHHhhhhhhhhhhhcchhhHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 026318 97 RELFDRGLKLEVELRASEPVRAEVVQLRAEV------------QKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRAD 164 (240)
Q Consensus 97 Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~------------q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aE 164 (240)
-..+.-..|||..|.....|.+||..+-.|. |.|..+|.-.-..+.=+++|+.|..+ +|-.+..|
T Consensus 22 ~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI~~Eikr~e~---~i~d~q~e 98 (120)
T KOG3478|consen 22 EKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFISKEIKRLEN---QIRDSQEE 98 (120)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 3456677899999999999999999988774 33444444444445555555554432 23333444
Q ss_pred HHHHHHHHHHH
Q 026318 165 IDGIRSELVEA 175 (240)
Q Consensus 165 id~lrqElqr~ 175 (240)
....|..+..+
T Consensus 99 ~~k~R~~v~k~ 109 (120)
T KOG3478|consen 99 FEKQREAVIKL 109 (120)
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 298
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=47.64 E-value=13 Score=32.47 Aligned_cols=44 Identities=36% Similarity=0.505 Sum_probs=24.3
Q ss_pred hhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHH
Q 026318 91 DKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQEL 137 (240)
Q Consensus 91 e~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQEL 137 (240)
|=|..+-.-|||.+-||.||..-|.|+-++|.++-|+. -.+|||
T Consensus 4 D~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~R---DLKqEl 47 (166)
T PF04880_consen 4 DFESKLNQAIERNALLESELDEKENLREEVQRLKDELR---DLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-----------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 34566677889999999999777777777777777544 346777
No 299
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=47.48 E-value=45 Score=24.80 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHH
Q 026318 138 TTQIKGLTKDVNRLEAENKQ-LIAMRADIDGIRSEL 172 (240)
Q Consensus 138 t~qvq~ltqeL~r~~~d~qq-ip~l~aEid~lrqEl 172 (240)
..+|+++.+-+.=++.+-.+ +-.|.+||+.|+++-
T Consensus 2 ~~qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~ 37 (60)
T PF14916_consen 2 EQQVQSLEKSILFLQQEHAQTLKGLHAEIERLQKRN 37 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45777777777776666554 777888888887754
No 300
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=47.23 E-value=1.7e+02 Score=24.59 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 026318 200 LISMAREIEKLRAELLNT 217 (240)
Q Consensus 200 lisMarEvEKLRaElana 217 (240)
|+.-..+++.||.++.+-
T Consensus 147 y~~~~~~~~~l~~~i~~l 164 (177)
T PF13870_consen 147 YDKTKEEVEELRKEIKEL 164 (177)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555566666655543
No 301
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=47.18 E-value=2.6e+02 Score=26.69 Aligned_cols=97 Identities=25% Similarity=0.410 Sum_probs=61.1
Q ss_pred hcchhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 026318 111 RASEPVRAEVVQLRAEVQKLN---SSRQELTTQIKGLTKDVNRLE---AENKQLIAMRADIDGIRSELVEARRAFEFEKK 184 (240)
Q Consensus 111 Ra~e~lk~El~Q~r~e~q~L~---a~RQELt~qvq~ltqeL~r~~---~d~qqip~l~aEid~lrqElqr~Raa~EyEKK 184 (240)
++.++++.++..+.--.+... ..=.+|..++..+.++|.... ..+-++-.|.+|+|.++.+.--.+.-|
T Consensus 107 ~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki----- 181 (294)
T COG1340 107 RSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKI----- 181 (294)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 444566666665554443322 122356667777777776555 345566667777777776654444332
Q ss_pred cchHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 026318 185 ANEEQIEQKQAMENNLISMAREIEKLRAEL 214 (240)
Q Consensus 185 ~~~e~~Eq~qaMEknlisMarEvEKLRaEl 214 (240)
.+..+|.|..-.-|+.+-++++.+|.+.
T Consensus 182 --~~la~eaqe~he~m~k~~~~~De~Rkea 209 (294)
T COG1340 182 --QELANEAQEYHEEMIKLFEEADELRKEA 209 (294)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888764
No 302
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=47.07 E-value=1.2e+02 Score=24.08 Aligned_cols=28 Identities=36% Similarity=0.450 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 119 EVVQLRAEVQKLNSSRQELTTQIKGLTK 146 (240)
Q Consensus 119 El~Q~r~e~q~L~a~RQELt~qvq~ltq 146 (240)
++.|+.++|+.|.+-=..++..|+.+..
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~a 52 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRP 52 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555444433333333333333
No 303
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=46.79 E-value=38 Score=28.75 Aligned_cols=35 Identities=11% Similarity=0.380 Sum_probs=24.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318 146 KDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (240)
Q Consensus 146 qeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (240)
.|.+|.---.-++..+.+|++.+.+++...++.|+
T Consensus 63 DeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~ 97 (161)
T PF04420_consen 63 DEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFD 97 (161)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555566677777788887777777777665
No 304
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=46.78 E-value=53 Score=25.76 Aligned_cols=29 Identities=31% Similarity=0.539 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 125 AEVQKLNSSRQELTTQIKGLTKDVNRLEA 153 (240)
Q Consensus 125 ~e~q~L~a~RQELt~qvq~ltqeL~r~~~ 153 (240)
+-+.+|.+.=|+|.++|..|..|..-..+
T Consensus 25 aK~dqlss~vq~LnAkv~qLe~dv~a~~~ 53 (78)
T COG4238 25 AKIDQLSSDVQTLNAKVDQLENDVNAMRS 53 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666666543333
No 305
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.77 E-value=3.4e+02 Score=27.86 Aligned_cols=118 Identities=13% Similarity=0.159 Sum_probs=60.8
Q ss_pred hHhHHHHHhhhhhhhhhhhcchh----hHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhhhHHH
Q 026318 93 EAHTRELFDRGLKLEVELRASEP----VRAEVVQLRAEVQKLNSSRQELTT-------QIKGLTKDVNRLEAENKQLIAM 161 (240)
Q Consensus 93 e~q~Rel~ek~~KmEAelRa~e~----lk~El~Q~r~e~q~L~a~RQELt~-------qvq~ltqeL~r~~~d~qqip~l 161 (240)
...|-|+...+.|.++|+--+-. +.++.--+..-+++==+.--||.- -|...++=|++.++.--+|-.+
T Consensus 388 tqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~iH~nc~ei~E~ 467 (521)
T KOG1937|consen 388 TQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCMEILEM 467 (521)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777654322 222222222211111111122221 1346677788888888888888
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh-hcchHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 026318 162 RADIDGIRSELVEARRAFEFEK-KANEEQIEQKQAMENNLISMAREIEKLRAE 213 (240)
Q Consensus 162 ~aEid~lrqElqr~Raa~EyEK-K~~~e~~Eq~qaMEknlisMarEvEKLRaE 213 (240)
..+-+++++|+--+-.-|+-|+ |.+-.++|+.+ .++-..-.|.+.|-.+
T Consensus 468 i~~tg~~~revrdlE~qI~~E~~k~~l~slEkl~---~Dyqairqen~~L~~~ 517 (521)
T KOG1937|consen 468 IRETGALKREVRDLESQIYVEEQKQYLKSLEKLH---QDYQAIRQENDQLFSE 517 (521)
T ss_pred HHHcchHHHHHHHHHHHHhHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHH
Confidence 8888888887765555554433 22333333332 2444444455444444
No 306
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=46.45 E-value=1.8e+02 Score=25.14 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 026318 131 NSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEF 181 (240)
Q Consensus 131 ~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey 181 (240)
..-+-.|...+..|+.+...+.+- +-.-.++|+.|+.+|...++.|+.
T Consensus 134 ~~f~~~l~~D~~~l~~~~~~l~~~---l~~~~g~I~~L~~~I~~~~~~I~~ 181 (184)
T PF05791_consen 134 NDFKDKLQKDSRNLKTDVDELQSI---LAGENGDIPQLQKQIENLNEEIKK 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHTT--HHHHHHHHHHHTGGG-G
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH---HhcccCCHHHHHHHHHHHHHHHHh
Confidence 333344444444444444333321 122335666666666666666654
No 307
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=46.00 E-value=1.2e+02 Score=24.50 Aligned_cols=15 Identities=53% Similarity=0.680 Sum_probs=9.6
Q ss_pred HHHHhhhhhhhhhhh
Q 026318 97 RELFDRGLKLEVELR 111 (240)
Q Consensus 97 Rel~ek~~KmEAelR 111 (240)
++|+++...||..+.
T Consensus 4 ~~l~~~l~~le~~l~ 18 (107)
T PF06156_consen 4 KELFDRLDQLEQQLG 18 (107)
T ss_pred HHHHHHHHHHHHHHH
Confidence 567777777775543
No 308
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=45.95 E-value=2.2e+02 Score=25.36 Aligned_cols=41 Identities=27% Similarity=0.325 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHH
Q 026318 161 MRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIE 208 (240)
Q Consensus 161 l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvE 208 (240)
+..-...|..++..+..+|+-|+... +.+|.+++..-.|+.
T Consensus 119 ie~~~~~l~~~l~~l~~~~~~Er~~R-------~erE~~i~krl~e~~ 159 (247)
T PF06705_consen 119 IEELNQELVRELNELQEAFENERNER-------EEREENILKRLEEEE 159 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 33444567788888888888888764 445666665555543
No 309
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=45.86 E-value=3.6e+02 Score=27.82 Aligned_cols=54 Identities=20% Similarity=0.351 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 026318 161 MRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNT 217 (240)
Q Consensus 161 l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaElana 217 (240)
+..|+..+.+.+.++---.+--++.|- +|+.+|=.-|++|.--+.|-+.||.+-
T Consensus 460 l~eeL~~a~~~i~~LqDEL~TTr~NYE---~QLs~MSEHLasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 460 LEEELKEANQNISRLQDELETTRRNYE---EQLSMMSEHLASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333333333332 477778777888877777777777653
No 310
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=45.33 E-value=2e+02 Score=29.23 Aligned_cols=44 Identities=27% Similarity=0.348 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026318 114 EPVRAEVVQLRAEVQKLN-SSRQELTTQIKGLTKDVNRLEAENKQ 157 (240)
Q Consensus 114 e~lk~El~Q~r~e~q~L~-a~RQELt~qvq~ltqeL~r~~~d~qq 157 (240)
+-++.||.++|...-.+. -.|--=++.+-.+-+++.+++-++-.
T Consensus 377 eelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~nr~ 421 (502)
T KOG0982|consen 377 EELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQPNRI 421 (502)
T ss_pred HHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhccccch
Confidence 456666666665544333 11111223344444444444444433
No 311
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=45.06 E-value=3.5e+02 Score=27.52 Aligned_cols=52 Identities=17% Similarity=0.358 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318 128 QKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (240)
Q Consensus 128 q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (240)
.+|....+++..++..+.+.|..+-++ ..+..+..+++.+..++..+.+.++
T Consensus 394 ~~~~~~~~~~e~el~~l~~~l~~~~~~-e~i~~l~e~l~~l~~~l~~~~~~~~ 445 (650)
T TIGR03185 394 SQLLKELRELEEELAEVDKKISTIPSE-EQIAQLLEELGEAQNELFRSEAEIE 445 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444443332221 2344444444444444444444443
No 312
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=44.43 E-value=82 Score=31.76 Aligned_cols=19 Identities=21% Similarity=0.567 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHH-HHhh
Q 026318 39 LEEEIEIQRREMHRI-ISEN 57 (240)
Q Consensus 39 LEe~La~Q~~EiqrL-l~dN 57 (240)
|+.||++--+=+|.. +.||
T Consensus 260 LdkRlaadgrglq~v~INdn 279 (506)
T KOG2441|consen 260 LDKRLAADGRGLQDVHINDN 279 (506)
T ss_pred chhhhhhccCCcccceeccc
Confidence 788887644444433 4444
No 313
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=44.22 E-value=3e+02 Score=26.52 Aligned_cols=53 Identities=25% Similarity=0.397 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH----HHHHHHHHhhhhh
Q 026318 127 VQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIR----SELVEARRAFEFE 182 (240)
Q Consensus 127 ~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lr----qElqr~Raa~EyE 182 (240)
+++|-..+-.+..++++++.++.-. ..+++.+.+++.+++ +|+.+.-+...-+
T Consensus 287 i~~Lr~~~~~~~~~~~~l~~~~~~~---~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~ 343 (458)
T COG3206 287 IQDLRQQYAQVRQQIADLSTELGAK---HPQLVALEAQLAELRQQIAAELRQILASLPNE 343 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc---ChHHHhHHHHHHHHHHHHHHHHHHHHHhchhH
Confidence 4455555555555555555555433 344455555555444 4444444444433
No 314
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=44.02 E-value=1.4e+02 Score=26.17 Aligned_cols=46 Identities=24% Similarity=0.395 Sum_probs=29.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHhhhhhHHHH
Q 026318 114 EPVRAEVVQLRAEVQKLNSSRQELTTQ---------------IKGLTKDVNRLEAENKQLIAMR 162 (240)
Q Consensus 114 e~lk~El~Q~r~e~q~L~a~RQELt~q---------------vq~ltqeL~r~~~d~qqip~l~ 162 (240)
+.+|.||.++-.||+.| ||-|.++ ...|+++|.+-.-|+|...+.+
T Consensus 32 eeLr~EL~KvEeEI~TL---rqvL~aKer~~~eLKrkLGit~l~elkqnlskg~~~vq~S~aY~ 92 (162)
T PF04201_consen 32 EELRSELAKVEEEIQTL---RQVLAAKERHCAELKRKLGITPLSELKQNLSKGWHDVQDSNAYK 92 (162)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHCCchHHHHHHHHHHHhHhhhchhHHH
Confidence 46778888888877744 4444443 3456777777666776666665
No 315
>PLN02678 seryl-tRNA synthetase
Probab=43.75 E-value=1.9e+02 Score=28.78 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 118 AEVVQLRAEVQKLNSSRQELTTQIKG 143 (240)
Q Consensus 118 ~El~Q~r~e~q~L~a~RQELt~qvq~ 143 (240)
.+..++..++..|.+.|..++.++..
T Consensus 40 ~~~r~l~~~~e~lr~erN~~sk~I~~ 65 (448)
T PLN02678 40 KEWRQRQFELDSLRKEFNKLNKEVAK 65 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556666666666666644
No 316
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=43.72 E-value=3.5e+02 Score=27.13 Aligned_cols=97 Identities=20% Similarity=0.266 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHHHHhhhhhhhcchHHHHHH
Q 026318 116 VRAEVVQLRAEVQKLN-SSRQELTTQIKGLTKDVNRLEAENKQLIAMRA-DIDGIRSELVEARRAFEFEKKANEEQIEQK 193 (240)
Q Consensus 116 lk~El~Q~r~e~q~L~-a~RQELt~qvq~ltqeL~r~~~d~qqip~l~a-Eid~lrqElqr~Raa~EyEKK~~~e~~Eq~ 193 (240)
+..-+.|+..+.+++. ..+.+....+..++++. .+++-.+.. .++++++- +..-|.-+=+.....+|+.
T Consensus 96 l~~~~~ql~~~~~~~~~~i~e~~~~~~~el~~~~------~~~Ll~~~~~~~e~f~e~---l~~~~~~s~~~~~~~~~~i 166 (448)
T COG1322 96 LIESLAQLSSEFQELANEIFEELNRRLAELNQQN------LKQLLKPLREVLEKFREQ---LEQRIHESAEERSTLLEEI 166 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444432 23334444444433332 234444444 44445432 2334555566788999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhhcccc
Q 026318 194 QAMENNLISMAREIEKLRAELLNTERRA 221 (240)
Q Consensus 194 qaMEknlisMarEvEKLRaElanaekRa 221 (240)
..+--++-+|++|+-.|-+=|.|.-+|+
T Consensus 167 ~~~lg~~~~la~e~~~Lt~~Lk~~ktrG 194 (448)
T COG1322 167 DRLLGEIQQLAQEAGNLTAALKGNKTRG 194 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 9999999999999999999999954443
No 317
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=43.56 E-value=3.6e+02 Score=27.21 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=12.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHH
Q 026318 151 LEAENKQLIAMRADIDGIRSELVEAR 176 (240)
Q Consensus 151 ~~~d~qqip~l~aEid~lrqElqr~R 176 (240)
+....+.+-....+++.+.+|+...+
T Consensus 106 Le~ke~~L~~re~eLee~~~e~~~~~ 131 (514)
T TIGR03319 106 LEKKEKELSNKEKNLDEKEEELEELI 131 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555555555443
No 318
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=43.53 E-value=2.1e+02 Score=25.79 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=14.7
Q ss_pred hHHHHHHHHhhHHHHHHHhhhhh
Q 026318 64 NTHLQRELTASKDEIHRLGQIIP 86 (240)
Q Consensus 64 hvaLrqeL~aaq~El~~l~~~i~ 86 (240)
-|.||.||+.....|........
T Consensus 98 evrLkrELa~Le~~l~~~~~~~~ 120 (195)
T PF12761_consen 98 EVRLKRELAELEEKLSKVEQAAE 120 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777766666654443
No 319
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=43.23 E-value=2.1e+02 Score=27.82 Aligned_cols=11 Identities=36% Similarity=0.625 Sum_probs=4.2
Q ss_pred HHHHHHHHHhh
Q 026318 206 EIEKLRAELLN 216 (240)
Q Consensus 206 EvEKLRaElan 216 (240)
++.+|..++.+
T Consensus 397 ~~~~l~~~l~~ 407 (451)
T PF03961_consen 397 ELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHh
Confidence 33333333333
No 320
>PRK15396 murein lipoprotein; Provisional
Probab=42.85 E-value=1.2e+02 Score=23.44 Aligned_cols=38 Identities=18% Similarity=0.389 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (240)
Q Consensus 115 ~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~ 152 (240)
.|..++..+.+++..|.+.=+.+...++....|-.|++
T Consensus 29 ~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN 66 (78)
T PRK15396 29 QLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARAN 66 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445444444444444444555444444443
No 321
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=42.66 E-value=2.3e+02 Score=27.46 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=12.0
Q ss_pred HHHHHHHHHhhhcccccccccc
Q 026318 206 EIEKLRAELLNTERRACGLGKI 227 (240)
Q Consensus 206 EvEKLRaElanaekRa~~~~~~ 227 (240)
.+++-+-+|.+..-||-..|..
T Consensus 198 ~~~~A~l~L~~T~IrAP~dG~V 219 (352)
T COG1566 198 ALDQAKLDLERTVIRAPVDGYV 219 (352)
T ss_pred HHHHHHHHhhCCEEECCCCceE
Confidence 3444445556666676555544
No 322
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=41.95 E-value=2.6e+02 Score=25.11 Aligned_cols=23 Identities=22% Similarity=0.056 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhhcccccccccc
Q 026318 205 REIEKLRAELLNTERRACGLGKI 227 (240)
Q Consensus 205 rEvEKLRaElanaekRa~~~~~~ 227 (240)
.++++.+..+.+..-+|-..|.+
T Consensus 193 ~~l~~a~~~l~~~~I~AP~~G~V 215 (334)
T TIGR00998 193 ERLKTAWLALKRTVIRAPFDGYV 215 (334)
T ss_pred HHHHHHHHHhhCcEEEcCCCcEE
Confidence 34445555566666666555554
No 323
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=41.77 E-value=4.2e+02 Score=27.48 Aligned_cols=72 Identities=18% Similarity=0.389 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHH
Q 026318 120 VVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIE 191 (240)
Q Consensus 120 l~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~E 191 (240)
+..++.=+.|....=.+|-.....+..||+.+......+-.|.++++.+++++..+=.++---.+.+++.++
T Consensus 306 l~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~ 377 (557)
T COG0497 306 LFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELE 377 (557)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444455555555556666655555556666666666666666555555444454444444
No 324
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=41.71 E-value=2.5e+02 Score=24.93 Aligned_cols=42 Identities=14% Similarity=0.261 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHH
Q 026318 163 ADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREI 207 (240)
Q Consensus 163 aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEv 207 (240)
.+-...-+.+...|.-| + ..-...+++.|.+|.+=|...+++
T Consensus 164 ~~Y~~~v~~~~~~~~~~--~-~~m~~~~~~~Q~lEe~Ri~~~k~~ 205 (261)
T cd07648 164 DEYKALVEKYNNIRADF--E-TKMTDSCKRFQEIEESHLRQMKEF 205 (261)
T ss_pred HHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555553 3 233467788888888777666654
No 325
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.30 E-value=4.2e+02 Score=27.28 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=12.1
Q ss_pred HHHHHHHHHhHHHHHHHHH
Q 026318 190 IEQKQAMENNLISMAREIE 208 (240)
Q Consensus 190 ~Eq~qaMEknlisMarEvE 208 (240)
+.-.|.||..|-+.+.|++
T Consensus 344 ~~~IqeleqdL~a~~eei~ 362 (521)
T KOG1937|consen 344 IRRIQELEQDLEAVDEEIE 362 (521)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666
No 326
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=41.27 E-value=5.1e+02 Score=28.27 Aligned_cols=45 Identities=24% Similarity=0.365 Sum_probs=32.9
Q ss_pred hhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhh
Q 026318 63 DNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVE 109 (240)
Q Consensus 63 thvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAe 109 (240)
.+-+||.|.-..+.|+.- ....+.-+|+|-+|+.|+.-+-||-.+
T Consensus 424 ERDalr~e~kslk~ela~--~l~~DeLaEkdE~I~~lm~EGEkLSK~ 468 (961)
T KOG4673|consen 424 ERDALRREQKSLKKELAA--ALLKDELAEKDEIINQLMAEGEKLSKK 468 (961)
T ss_pred hHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHhHHH
Confidence 466788888888887763 233357788999999999887776543
No 327
>PF05794 Tcp11: T-complex protein 11; InterPro: IPR008862 This family consists of several eukaryotic T-complex protein 11 (Tcp11) related sequences. Tcp11 is only expressed in fertile adult mammalian testes and is thought to be important in sperm function and fertility. The family also contains the Saccharomyces cerevisiae Sok1 protein which is known to suppress cyclic AMP-dependent protein kinase mutants [].
Probab=41.11 E-value=3.2e+02 Score=25.97 Aligned_cols=53 Identities=17% Similarity=0.331 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHH
Q 026318 128 QKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQ 194 (240)
Q Consensus 128 q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~q 194 (240)
..++..=..+-..+..|.-|++ .--|..+|.-|+ ..++|||++.+.+.++...
T Consensus 137 ~~~V~~lr~if~~le~MklD~A------------N~~i~~~rp~L~--~~sv~yEr~~F~~~l~~~~ 189 (441)
T PF05794_consen 137 TDIVDGLRFIFEILELMKLDMA------------NFQIRSLRPQLI--EHSVEYERKKFQERLEKGP 189 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH--HHHHHHHHHHHHHHHHhCc
Confidence 3444444445555555555544 233555665553 4669999999999995553
No 328
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=40.68 E-value=2.3e+02 Score=24.21 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=22.4
Q ss_pred hhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhh
Q 026318 58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRAD 91 (240)
Q Consensus 58 qRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae 91 (240)
+.|++.+-.|.+++...+.++..|+..+.++++=
T Consensus 9 e~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~ 42 (145)
T COG1730 9 EELAAQLQILQSQIESLQAQIAALNAAISELQTA 42 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666667777777777777777666666543
No 329
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=40.61 E-value=2e+02 Score=23.48 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=36.1
Q ss_pred hhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 102 RGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRL 151 (240)
Q Consensus 102 k~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~ 151 (240)
|...|..+|+.-| +.|..+..|+..|.=--+-|+..|..|..||...
T Consensus 27 k~~~L~e~Lk~ke---~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 27 KNAELKEQLKEKE---QALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666554 3566777899999999999999999999998843
No 330
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=40.47 E-value=2.6e+02 Score=24.64 Aligned_cols=97 Identities=15% Similarity=0.220 Sum_probs=54.0
Q ss_pred HhhhhhhhhhhhcchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 026318 100 FDRGLKLEVELRASEPVRAEVVQLRAEVQ-KLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRA 178 (240)
Q Consensus 100 ~ek~~KmEAelRa~e~lk~El~Q~r~e~q-~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa 178 (240)
-+|-.+++.++...+..+.|..+...+.+ +|..++.+-..-+.....+-.+...+... ..+.| ..+.+..++..
T Consensus 78 ~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~--~A~~e---ae~ii~~A~~~ 152 (205)
T PRK06231 78 NKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQLKSELEK--EANRQ---ANLIIFQARQE 152 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH---HHHHHHHHHHH
Confidence 34555666666666777777766666554 34555555555555444444433333222 23333 34567778888
Q ss_pred hhhhhhcchHHHHHHHHHHHhHHHHHHHH
Q 026318 179 FEFEKKANEEQIEQKQAMENNLISMAREI 207 (240)
Q Consensus 179 ~EyEKK~~~e~~Eq~qaMEknlisMarEv 207 (240)
++.|+..-... +.+.++.+|-++
T Consensus 153 Ie~Ek~~a~~~------Lk~ei~~lAv~i 175 (205)
T PRK06231 153 IEKERRELKEQ------LQKESVELAMLA 175 (205)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHH
Confidence 88888755433 344555555443
No 331
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=40.31 E-value=19 Score=28.29 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=12.7
Q ss_pred hhHhhHHHHHHHHhhHHHHHHHhhhhhhh
Q 026318 60 AIDDNTHLQRELTASKDEIHRLGQIIPKL 88 (240)
Q Consensus 60 LAathvaLrqeL~aaq~El~~l~~~i~~i 88 (240)
|+.+...|..+....+.++..|...+...
T Consensus 30 l~~~~~~l~~e~~~L~~~~~~l~~~l~~~ 58 (131)
T PF05103_consen 30 LAEELERLQRENAELKEEIEELQAQLEEL 58 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44444445555555555555555444444
No 332
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=40.30 E-value=97 Score=26.73 Aligned_cols=53 Identities=19% Similarity=0.370 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 026318 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELV 173 (240)
Q Consensus 115 ~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElq 173 (240)
.+-.+|.+.+. +|..--+.|...+..++.=| .++...||.|+.+|+.++.+++
T Consensus 128 ~~i~~L~~f~~---~l~~D~~~l~~~~~~l~~~l---~~~~g~I~~L~~~I~~~~~~I~ 180 (184)
T PF05791_consen 128 ALINELNDFKD---KLQKDSRNLKTDVDELQSIL---AGENGDIPQLQKQIENLNEEIK 180 (184)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---HHTT--HHHHHHHHHHHTGGG-
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHH---hcccCCHHHHHHHHHHHHHHHH
Confidence 34455555555 44445555666665555433 3666778888888888887764
No 333
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=40.18 E-value=2e+02 Score=23.31 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=37.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHH
Q 026318 155 NKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMEN 198 (240)
Q Consensus 155 ~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEk 198 (240)
..-+..|..-|...++.+.+++..+|.-++...+-.-..++|||
T Consensus 70 ~~fl~~L~~~i~~q~~~v~~~~~~ve~~r~~~~ea~~~~k~~ek 113 (146)
T PRK07720 70 QQFVTNLERTIDHYQLLVMQAREQMNRKQQDLTEKNIEVKKYEK 113 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788889999999999999999998888888888888887
No 334
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=40.10 E-value=4.7e+02 Score=27.60 Aligned_cols=118 Identities=11% Similarity=0.240 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHH
Q 026318 42 EIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVV 121 (240)
Q Consensus 42 ~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~ 121 (240)
=+..=..+|+.|+.+|=....+|+ ..+|..+- ......++.+-+..+-..++.+..|-.. ....+..|.
T Consensus 188 ~l~~~~~qi~~l~~~ny~~~~~~v--~~~L~~~~------~~lg~~i~~~l~~~~~~~L~~i~~l~~~---~~~~~~~L~ 256 (806)
T PF05478_consen 188 FLNDTPQQIDHLLVQNYSELKDHV--SSDLDNIG------SLLGGDIQDQLGSNVYPALDSILDLAQA---MQETKELLQ 256 (806)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHH--HHHHHhcc------chhhHHHHHHHhhhhHHHHHHHHHHHHH---HHHHHHHHH
Confidence 344556778888888877776654 34444443 2446677888888888888888877653 345666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------hhhhHHHHHHHHHHHH
Q 026318 122 QLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE----------------------NKQLIAMRADIDGIRS 170 (240)
Q Consensus 122 Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d----------------------~qqip~l~aEid~lrq 170 (240)
++.....+|...-++|..-+.++..+|.....+ ..|+|.+...++++..
T Consensus 257 ~v~~~~~~L~~~~~qL~~~L~~vK~~L~~~l~~~C~~~~C~~i~~~~~~l~l~~~~~qLP~v~~~l~~l~~ 327 (806)
T PF05478_consen 257 NVNSSLKDLQEYQSQLRDGLRGVKRDLNNTLQDLCTNRECNSILSSLDILQLDADFSQLPNVTSQLNNLEE 327 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhHHHHHhccccccCCCcccCCChHHHHHHHHH
Confidence 777777777777777777777776666666555 4478888888888774
No 335
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=39.58 E-value=4.3e+02 Score=27.00 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=37.0
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhh
Q 026318 38 TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIP 86 (240)
Q Consensus 38 ~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~ 86 (240)
-+++|+.--..+++.|..|----.+-|-.||||..+.++=.+.|-....
T Consensus 219 di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~r 267 (502)
T KOG0982|consen 219 DIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRR 267 (502)
T ss_pred hHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888888877666667789999999999885555544433
No 336
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=39.56 E-value=2.6e+02 Score=24.40 Aligned_cols=19 Identities=11% Similarity=0.240 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 026318 161 MRADIDGIRSELVEARRAF 179 (240)
Q Consensus 161 l~aEid~lrqElqr~Raa~ 179 (240)
...||+-|++..+++++-+
T Consensus 168 ~~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 168 HQEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3556666666666555543
No 337
>PRK10698 phage shock protein PspA; Provisional
Probab=39.55 E-value=2.8e+02 Score=24.77 Aligned_cols=86 Identities=20% Similarity=0.261 Sum_probs=57.4
Q ss_pred hhhHhhHHHHHHHHhhHHHHHHHh-hhhhhhhhhhhHhHHH-------HHhhhhhhhhhhhcc----hhhHHHHHHHHHH
Q 026318 59 HAIDDNTHLQRELTASKDEIHRLG-QIIPKLRADKEAHTRE-------LFDRGLKLEVELRAS----EPVRAEVVQLRAE 126 (240)
Q Consensus 59 RLAathvaLrqeL~aaq~El~~l~-~~i~~i~ae~e~q~Re-------l~ek~~KmEAelRa~----e~lk~El~Q~r~e 126 (240)
+..++.-.+.+++..++..+.... .+...++.-+|-=-|+ ..+++..++.++... +.|+..+.+++..
T Consensus 49 ~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~k 128 (222)
T PRK10698 49 RALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENK 128 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777777777777766 4556677777777777 666666666666544 4556677777777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026318 127 VQKLNSSRQELTTQIKGL 144 (240)
Q Consensus 127 ~q~L~a~RQELt~qvq~l 144 (240)
+++.-+-+..|.++.+..
T Consensus 129 i~eak~k~~~L~aR~~~A 146 (222)
T PRK10698 129 LSETRARQQALMLRHQAA 146 (222)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777776665544
No 338
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=39.45 E-value=2.7e+02 Score=24.54 Aligned_cols=87 Identities=24% Similarity=0.385 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHH
Q 026318 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQA 195 (240)
Q Consensus 116 lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qa 195 (240)
+-+=|--+--+-+.|.-.|++|-+-+-=+++| |..++.=||..-.||..++..|--=.|-|-+-+|+.-.
T Consensus 54 Vq~~LgrveEetkrLa~ireeLE~l~dP~RkE----------v~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nE 123 (159)
T PF04949_consen 54 VQAQLGRVEEETKRLAEIREELEVLADPMRKE----------VEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNE 123 (159)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhccchHHH----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566777788888888777777777 44677778888888888888876555555555554432
Q ss_pred -------HHHhHHHHHHHHHHHHH
Q 026318 196 -------MENNLISMAREIEKLRA 212 (240)
Q Consensus 196 -------MEknlisMarEvEKLRa 212 (240)
+=..|+.+..|-|++|-
T Consensus 124 knkeK~~Lv~~L~eLv~eSE~~rm 147 (159)
T PF04949_consen 124 KNKEKAQLVTRLMELVSESERLRM 147 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11236678888888874
No 339
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=39.17 E-value=4.2e+02 Score=26.74 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhhhhhhhcchHHH
Q 026318 167 GIRSELVEARRAFEFEKKANEEQI 190 (240)
Q Consensus 167 ~lrqElqr~Raa~EyEKK~~~e~~ 190 (240)
.+++|.-..-..+|.|-|.+++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~a~~~ 183 (514)
T TIGR03319 160 EARHEAAKLIKEIEEEAKEEADKK 183 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555544443
No 340
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=39.01 E-value=2.5e+02 Score=24.16 Aligned_cols=105 Identities=23% Similarity=0.333 Sum_probs=67.1
Q ss_pred cchHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHh-hhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchh
Q 026318 37 MTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLG-QIIPKLRADKEAHTRELFDRGLKLEVELRASEP 115 (240)
Q Consensus 37 ~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~-~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~ 115 (240)
.+|++-|..-...|..+-..=.+..+...-|.+++..++.++..+. .+...++.-.|---|..+.+...++..+. .
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~---~ 102 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAE---R 102 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH---H
Confidence 5667666666666666665556666777778888888888887776 45556777788888888888888777664 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGL 144 (240)
Q Consensus 116 lk~El~Q~r~e~q~L~a~RQELt~qvq~l 144 (240)
++..+.++...+.+|...-.+|..++..+
T Consensus 103 l~~~~~~~~~~~~~l~~~l~~l~~kl~e~ 131 (221)
T PF04012_consen 103 LEQQLDQAEAQVEKLKEQLEELEAKLEEL 131 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 341
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=38.81 E-value=2.3e+02 Score=23.66 Aligned_cols=71 Identities=23% Similarity=0.321 Sum_probs=41.6
Q ss_pred hhhhhhhhhhcchhhHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 026318 102 RGLKLEVELRASEPVRAEVVQLRAEV------------QKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIR 169 (240)
Q Consensus 102 k~~KmEAelRa~e~lk~El~Q~r~e~------------q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lr 169 (240)
...++|++|+-++-+..|+..+-.|. .+...+..+|..++..+...+..+. .|.-.+..+++.|+
T Consensus 28 qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLe---kQe~~l~e~l~eLq 104 (119)
T COG1382 28 QKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLE---KQEEKLQERLEELQ 104 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 34456666666666666666554442 1334556666666666666555443 34556667777777
Q ss_pred HHHHHH
Q 026318 170 SELVEA 175 (240)
Q Consensus 170 qElqr~ 175 (240)
.+|+.+
T Consensus 105 ~~i~~~ 110 (119)
T COG1382 105 SEIQKA 110 (119)
T ss_pred HHHHHH
Confidence 777654
No 342
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=38.72 E-value=2.1e+02 Score=25.19 Aligned_cols=55 Identities=11% Similarity=0.154 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHH
Q 026318 157 QLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLR 211 (240)
Q Consensus 157 qip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLR 211 (240)
+.-.+..|...|+.|+..++.-+++=.+.+.++.....+++..|=+|..=+++-|
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RAR 152 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRAR 152 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444455555555555555554444433
No 343
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=38.64 E-value=1.7e+02 Score=21.91 Aligned_cols=20 Identities=20% Similarity=0.516 Sum_probs=9.0
Q ss_pred HHHHhHHHHHHHHHHHHHHH
Q 026318 195 AMENNLISMAREIEKLRAEL 214 (240)
Q Consensus 195 aMEknlisMarEvEKLRaEl 214 (240)
.+++++-.+..+++++.+.|
T Consensus 80 ~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 80 KLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 344
>COG4920 Predicted membrane protein [Function unknown]
Probab=38.54 E-value=25 Score=32.49 Aligned_cols=34 Identities=35% Similarity=0.422 Sum_probs=23.9
Q ss_pred HHHHHHHHhhhhhhhcch-------HHHHHHHHHHHhHHHHH
Q 026318 170 SELVEARRAFEFEKKANE-------EQIEQKQAMENNLISMA 204 (240)
Q Consensus 170 qElqr~Raa~EyEKK~~~-------e~~Eq~qaMEknlisMa 204 (240)
||+.++|.-|| ||++|- ..-||.++|-+|..+|-
T Consensus 64 ~eI~~aR~LyE-EK~a~eL~~kDee~l~E~~~~~~~~f~~m~ 104 (249)
T COG4920 64 QEISRARPLYE-EKEANELLEKDEELLNEYKRFARASFMPML 104 (249)
T ss_pred HHHhhcchhHh-hhhhHHHHHhhHHHHHHHHHHHHHhccHHH
Confidence 78999999999 887652 33456666666665553
No 345
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.36 E-value=3.4e+02 Score=25.43 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=32.3
Q ss_pred hhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 91 DKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (240)
Q Consensus 91 e~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqe 147 (240)
...-.++.+.+...++-....+.+.+++.|.+...++++.+..-++=-+.--.+.+|
T Consensus 38 ~r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqe 94 (246)
T KOG4657|consen 38 PRRRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQE 94 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666666666666666666666666555444433333333333
No 346
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=38.05 E-value=1.9e+02 Score=23.72 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 026318 160 AMRADIDGIRSELVEARRAFEF 181 (240)
Q Consensus 160 ~l~aEid~lrqElqr~Raa~Ey 181 (240)
.|..|-..|+-|-+++|.-++-
T Consensus 33 el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 33 ELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555543
No 347
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=37.80 E-value=3.1e+02 Score=24.86 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhhHHHH
Q 026318 42 EIEIQRREMHRIISENRHAIDDNTHLQ 68 (240)
Q Consensus 42 ~La~Q~~EiqrLl~dNqRLAathvaLr 68 (240)
+|...-.||+.|-..||+|-++..-||
T Consensus 49 rlQ~hl~EIR~LKe~NqkLqedNqELR 75 (195)
T PF10226_consen 49 RLQQHLNEIRGLKEVNQKLQEDNQELR 75 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554444333
No 348
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=37.67 E-value=3.8e+02 Score=25.77 Aligned_cols=98 Identities=22% Similarity=0.346 Sum_probs=68.0
Q ss_pred chHHHHHHHHHHHHHHHHh-hhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhh
Q 026318 38 TLEEEIEIQRREMHRIISE-NRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPV 116 (240)
Q Consensus 38 ~LEe~La~Q~~EiqrLl~d-NqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~l 116 (240)
+|+|++-.=...|..-..+ +..|.+--|+|--||--.+.|-..+ =..+-.+=..++-+.|++..|..
T Consensus 175 ~lkee~d~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmei----L~aRqkkAeeLkrltd~A~~MsE-------- 242 (302)
T PF07139_consen 175 VLKEEMDSSIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEI----LDARQKKAEELKRLTDRASQMSE-------- 242 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhcCH--------
Confidence 4566665555555544443 4567777899999999888886555 34455566678999999999973
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 026318 117 RAEVVQLRAEVQKLNSSRQ--ELTTQIKGLTKDV 148 (240)
Q Consensus 117 k~El~Q~r~e~q~L~a~RQ--ELt~qvq~ltqeL 148 (240)
..|..+|+||+-+++.|+ |=-+++..++=|+
T Consensus 243 -~Ql~ELRadIK~fvs~rk~de~lg~~~rf~~d~ 275 (302)
T PF07139_consen 243 -EQLAELRADIKHFVSERKYDEELGRAARFTCDP 275 (302)
T ss_pred -HHHHHHHHHHHHHhhhhhhHHHHhHhhhcccCH
Confidence 478899999999999996 3334444444443
No 349
>PF14182 YgaB: YgaB-like protein
Probab=37.61 E-value=2e+02 Score=22.62 Aligned_cols=40 Identities=30% Similarity=0.547 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 026318 134 RQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEF 181 (240)
Q Consensus 134 RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey 181 (240)
+|+...++..+.++= .+-.++.||..+++++.-.+..||-
T Consensus 26 CqeIE~eL~~l~~ea--------~l~~i~~EI~~mkk~Lk~Iq~~Fe~ 65 (79)
T PF14182_consen 26 CQEIEKELKELEREA--------ELHSIQEEISQMKKELKEIQRVFEK 65 (79)
T ss_pred HHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444432 3667888888888888888888864
No 350
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=37.15 E-value=2.1e+02 Score=25.44 Aligned_cols=68 Identities=21% Similarity=0.352 Sum_probs=37.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 026318 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEF 181 (240)
Q Consensus 113 ~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey 181 (240)
.+-+-.+...+.+.++.|...++.|..-+.... .+.-.-.=-+++-.++.|||.+..++..+...++|
T Consensus 127 ~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~-~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~ 194 (262)
T PF14257_consen 127 SEDVTEQYVDLEARLKNLEAEEERLLELLEKAK-TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDY 194 (262)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 355556666666666666665555554443221 22222222234556677777777777777766665
No 351
>PRK14127 cell division protein GpsB; Provisional
Probab=37.10 E-value=1.2e+02 Score=24.92 Aligned_cols=61 Identities=11% Similarity=0.159 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhh---------hHhHHHHHhhhhhhhhhh
Q 026318 43 IEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADK---------EAHTRELFDRGLKLEVEL 110 (240)
Q Consensus 43 La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~---------e~q~Rel~ek~~KmEAel 110 (240)
|..=..+++.|..+|.+|-.....|+..|...+. .+...+... -.---+++.|+..||-.+
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~-------~~~~~~~~~~~~~~~~~~~~tn~DiLKRls~LEk~V 101 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTK-------QVSVGASSSSVATTQPSSSATNYDILKRLSNLEKHV 101 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhccccccccccccCCCCCcchHHHHHHHHHHHHHH
Confidence 3333446666666666555555555554444443 333332221 123446677777777654
No 352
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=36.88 E-value=3.5e+02 Score=25.16 Aligned_cols=47 Identities=13% Similarity=0.156 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 026318 131 NSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (240)
Q Consensus 131 ~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (240)
..+=-++.+|...+.+++.+...|....|. .-+..|..+.+.+|.+|
T Consensus 68 ~~sW~~il~QTE~isk~~~~~Aeeln~~~~--~kLs~L~~~k~~~rK~~ 114 (237)
T cd07685 68 SQSWAVLVSQTETLSQVLRKHAEDLNAGPL--SKLSLLIRDKQQLRKTF 114 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHH
Confidence 334456777777788887777777666665 45666666666665554
No 353
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=36.65 E-value=3.8e+02 Score=25.48 Aligned_cols=21 Identities=14% Similarity=0.052 Sum_probs=11.1
Q ss_pred HHHHHHHHhhhcccccccccc
Q 026318 207 IEKLRAELLNTERRACGLGKI 227 (240)
Q Consensus 207 vEKLRaElanaekRa~~~~~~ 227 (240)
++.-+..|.+..-+|-..|.+
T Consensus 206 l~~a~~~L~~t~I~AP~dG~V 226 (390)
T PRK15136 206 VRNAWLALQRTKIVSPMTGYV 226 (390)
T ss_pred HHHHHHHHhCCEEECCCCeEE
Confidence 344444555666666555544
No 354
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=36.60 E-value=61 Score=25.90 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLT 145 (240)
Q Consensus 115 ~lk~El~Q~r~e~q~L~a~RQELt~qvq~lt 145 (240)
.+++++.+++.+.++|....+.|..+|..|.
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555555555555555555555554443
No 355
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=36.34 E-value=6.6e+02 Score=28.18 Aligned_cols=151 Identities=15% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHH
Q 026318 48 REMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEV 127 (240)
Q Consensus 48 ~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~ 127 (240)
..-...+.+=+.....-..|++.+..+-.+++.+...+.+.+.+. .+.-+.-++ .++....
T Consensus 51 ~~tl~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~---------------~~~~~~~s~----~~Leq~l 111 (1109)
T PRK10929 51 QSALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEP---------------RSVPPNMST----DALEQEI 111 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccc---------------ccccccCCH----HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHH-HHHHHHHhHHHHHHH
Q 026318 128 QKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIE-QKQAMENNLISMARE 206 (240)
Q Consensus 128 q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~E-q~qaMEknlisMarE 206 (240)
-.-.+.-+++..+.+.....+..+..-.++.| .+. ...++.++..++..--.+......-+ |....+--....-.+
T Consensus 112 ~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~p--q~~-~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~ 188 (1109)
T PRK10929 112 LQVSSQLLEKSRQAQQEQDRAREISDSLSQLP--QQQ-TEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKAL 188 (1109)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhhch--hhH-HHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhccc
Q 026318 207 IEKLRAELLNTERR 220 (240)
Q Consensus 207 vEKLRaElanaekR 220 (240)
++.++.|+.++.+|
T Consensus 189 ~~~l~~~l~s~~~~ 202 (1109)
T PRK10929 189 VDELELAQLSANNR 202 (1109)
T ss_pred HHHHHHHHhccHHH
No 356
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=36.29 E-value=1.9e+02 Score=24.13 Aligned_cols=64 Identities=20% Similarity=0.249 Sum_probs=38.9
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHH
Q 026318 65 THLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQ 128 (240)
Q Consensus 65 vaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q 128 (240)
.+|.+++...+.++++.-.-.+.-++--=..+-||+++..-+|..+..+..==.|+.-+-.||.
T Consensus 11 ~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemKpVT~dV~ 74 (112)
T PF07439_consen 11 GTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSEMKPVTDDVK 74 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhccchHHHHH
Confidence 3455666666666666655555556655667778888888887666555444444444444444
No 357
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=36.21 E-value=3.1e+02 Score=24.34 Aligned_cols=64 Identities=9% Similarity=0.270 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhHHHHHHHHHHHHHHHHHHHhh
Q 026318 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEA----ENKQLIAMRADIDGIRSELVEARRAF 179 (240)
Q Consensus 116 lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~----d~qqip~l~aEid~lrqElqr~Raa~ 179 (240)
+-..|..+..-+.....--.|...++..+..+|.++.. --.++..|..+|..+..-+..+-...
T Consensus 97 lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~ 164 (237)
T PF00261_consen 97 LEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASE 164 (237)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhh
Confidence 34444455555555555555666666666666655443 23445555555555555555444433
No 358
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=36.01 E-value=2.7e+02 Score=23.61 Aligned_cols=84 Identities=15% Similarity=0.196 Sum_probs=42.1
Q ss_pred hhhhhhhhhhhcchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 026318 101 DRGLKLEVELRASEPVRAEVVQLRAEVQ-KLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (240)
Q Consensus 101 ek~~KmEAelRa~e~lk~El~Q~r~e~q-~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (240)
+|..++..++...+..+.|......+.+ +|..+|++-..-+....++-..... +.+-..+.| ..+.+..++..|
T Consensus 58 ~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e--~~~~~a~~e---a~~~~~~A~~~I 132 (184)
T PRK13455 58 KRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAE--QAKADLEAS---IARRLAAAEDQI 132 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH---HHHHHHHHHHHH
Confidence 4445555555556666666666555544 3444454444444443333222211 111112222 445567788888
Q ss_pred hhhhhcchHH
Q 026318 180 EFEKKANEEQ 189 (240)
Q Consensus 180 EyEKK~~~e~ 189 (240)
++||+.-...
T Consensus 133 ~~ek~~a~~~ 142 (184)
T PRK13455 133 ASAEAAAVKA 142 (184)
T ss_pred HHHHHHHHHH
Confidence 8888755443
No 359
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=35.82 E-value=16 Score=28.75 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=21.5
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhh
Q 026318 38 TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIP 86 (240)
Q Consensus 38 ~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~ 86 (240)
-..+=|..-..++..|..+|..|-...-.|..+|...+.....+...+.
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~ 70 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALI 70 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhh
Confidence 3455566666777777777776666666666666666555555544443
No 360
>PLN02320 seryl-tRNA synthetase
Probab=35.75 E-value=4.1e+02 Score=27.07 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026318 121 VQLRAEVQKLNSSRQELTTQIK 142 (240)
Q Consensus 121 ~Q~r~e~q~L~a~RQELt~qvq 142 (240)
.++..++..|.+.|..++.++.
T Consensus 103 r~~~~~~~~lr~ern~~sk~i~ 124 (502)
T PLN02320 103 LALQKEVERLRAERNAVANKMK 124 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555553
No 361
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=35.67 E-value=2.5e+02 Score=27.45 Aligned_cols=15 Identities=40% Similarity=0.689 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 026318 160 AMRADIDGIRSELVE 174 (240)
Q Consensus 160 ~l~aEid~lrqElqr 174 (240)
.+.++++.+..++..
T Consensus 84 ~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 84 ALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444443333
No 362
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=35.63 E-value=92 Score=29.77 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhh
Q 026318 45 IQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADK 92 (240)
Q Consensus 45 ~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~ 92 (240)
-+.+|.+.|+++=+-|-.....||..+.....||+.|++.|..+..++
T Consensus 245 KkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~~r 292 (294)
T KOG4571|consen 245 KKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYKKR 292 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999999999999999999999999888766543
No 363
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=35.24 E-value=1.9e+02 Score=23.63 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=20.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhhccc
Q 026318 195 AMENNLISMAREIEKLRAELLNTERR 220 (240)
Q Consensus 195 aMEknlisMarEvEKLRaElanaekR 220 (240)
.-.|.|-.--.|+++||+.|++-.+|
T Consensus 39 k~tkEL~~Ak~e~~~Lr~dl~aG~~R 64 (125)
T PF03245_consen 39 KYTKELADAKAEIDRLRADLAAGNKR 64 (125)
T ss_pred HHHHHHHHHHhhHHHHHHHHHcCCce
Confidence 34455666778999999999998777
No 364
>COG3166 PilN Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=35.15 E-value=1.8e+02 Score=26.21 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHH
Q 026318 139 TQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK 193 (240)
Q Consensus 139 ~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~ 193 (240)
.-..-|++++..+.++.+.|+-++++.+.+.|.+|+.... +.-.+.....+|++
T Consensus 55 ~~~~~L~~e~~~l~~~~aei~~l~~~~~~~~qr~q~~~~~-q~~r~~~s~~le~L 108 (206)
T COG3166 55 QRNALLTTEIALLDAEIAEIQQLKEQTQALLQRLQVIEQL-QQKRAGWSVLLEQL 108 (206)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HcccchHHHHHHHH
Confidence 3455688888889999999999999999999999998877 44444555455543
No 365
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=35.12 E-value=3.1e+02 Score=26.59 Aligned_cols=16 Identities=25% Similarity=0.563 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 026318 132 SSRQELTTQIKGLTKD 147 (240)
Q Consensus 132 a~RQELt~qvq~ltqe 147 (240)
..+.+|..+++.+..+
T Consensus 382 ~~~~~l~~~~~~l~~~ 397 (451)
T PF03961_consen 382 EKKKELKEELKELKEE 397 (451)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 366
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=34.89 E-value=2.1e+02 Score=23.40 Aligned_cols=15 Identities=40% Similarity=0.496 Sum_probs=10.2
Q ss_pred HHHHhhhhhhhhhhh
Q 026318 97 RELFDRGLKLEVELR 111 (240)
Q Consensus 97 Rel~ek~~KmEAelR 111 (240)
++|+|+...||..+.
T Consensus 4 ~elfd~l~~le~~l~ 18 (110)
T PRK13169 4 KEIFDALDDLEQNLG 18 (110)
T ss_pred hHHHHHHHHHHHHHH
Confidence 577777777775443
No 367
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=34.88 E-value=1.9e+02 Score=25.93 Aligned_cols=17 Identities=12% Similarity=0.344 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHhhhh
Q 026318 165 IDGIRSELVEARRAFEF 181 (240)
Q Consensus 165 id~lrqElqr~Raa~Ey 181 (240)
++.++.|..++|...++
T Consensus 95 ~~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 95 LEQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 33444444444444443
No 368
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=34.74 E-value=1.5e+02 Score=26.25 Aligned_cols=68 Identities=22% Similarity=0.208 Sum_probs=28.3
Q ss_pred HHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHH
Q 026318 54 ISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRA 125 (240)
Q Consensus 54 l~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~ 125 (240)
..+...--.+|. .+|||..+- .+|.+.+...+.|=+.+|.+|-.++.+||.=.+....+|.....+..
T Consensus 91 iv~~tsancs~Q-VqqeL~~tf---~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~ 158 (171)
T PF04799_consen 91 IVSFTSANCSHQ-VQQELSSTF---ARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLES 158 (171)
T ss_dssp --------------------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchHHH-HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334333333333 456666554 45666677777777777777777776666444444444444333333
No 369
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=34.71 E-value=3.5e+02 Score=24.51 Aligned_cols=71 Identities=24% Similarity=0.299 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHh-hhhhhhhhhhhHhHHHHHhhhhhhhh
Q 026318 38 TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLG-QIIPKLRADKEAHTRELFDRGLKLEV 108 (240)
Q Consensus 38 ~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~-~~i~~i~ae~e~q~Rel~ek~~KmEA 108 (240)
+|++.|-.-..++..+-..=-.+.+.+..|..++...+.....+- .+...+.+-.|.=.|+++.+...+|-
T Consensus 28 ~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~ 99 (225)
T COG1842 28 MLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLED 99 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 444444444444444433333444455555555555555554443 33344444445555555555555553
No 370
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=34.71 E-value=3.4e+02 Score=24.28 Aligned_cols=38 Identities=18% Similarity=0.346 Sum_probs=23.0
Q ss_pred HHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhh
Q 026318 50 MHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPK 87 (240)
Q Consensus 50 iqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~ 87 (240)
+..++.....+|..|..+-+.|...-+||..+..-+..
T Consensus 67 ~~~il~~~e~lA~~h~~~a~~L~~~~~eL~~l~~~~e~ 104 (234)
T cd07652 67 YHSSLEFHEKLADNGLRFAKALNEMSDELSSLAKTVEK 104 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777775555555555444433
No 371
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=34.55 E-value=1.1e+02 Score=31.15 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (240)
Q Consensus 116 lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~ 149 (240)
+.+.|..++.|.+.+.+.++++..+|+.+..|++
T Consensus 81 LEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~ 114 (475)
T PRK13729 81 MQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNA 114 (475)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 3444444455555555566665555554444433
No 372
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=34.50 E-value=2.5e+02 Score=24.22 Aligned_cols=38 Identities=26% Similarity=0.390 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 026318 122 QLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLI 159 (240)
Q Consensus 122 Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip 159 (240)
..+..|+.|...-..|-.++..+-+.|..++.++..+|
T Consensus 26 ~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 26 ENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444455555555554444444444
No 373
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=34.46 E-value=4.3e+02 Score=25.49 Aligned_cols=152 Identities=18% Similarity=0.264 Sum_probs=0.0
Q ss_pred CCCCCCCCccchHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhh
Q 026318 28 GLAPMHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLE 107 (240)
Q Consensus 28 ~~~~~~p~p~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmE 107 (240)
+.+..||+|..- .....-|-.|-.+|.-|=..--.+|..-...+.|+..|....-.+++--|+ |
T Consensus 11 ~~~~~~~S~~t~----~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEq------------E 74 (310)
T PF09755_consen 11 GAGMTSSSSATR----EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQ------------E 74 (310)
T ss_pred CCCCCCCCCCch----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------H
Q ss_pred hhhhcchhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHHHHHHH
Q 026318 108 VELRASEPVRAEVVQLRAEVQKL--------NSSRQELTTQIKGLTKDVNRLEAENKQ-----LIAMRADIDGIRSELVE 174 (240)
Q Consensus 108 AelRa~e~lk~El~Q~r~e~q~L--------~a~RQELt~qvq~ltqeL~r~~~d~qq-----ip~l~aEid~lrqElqr 174 (240)
.|.-+.--+|. |+++..|...| ......|+.++..|.+|-..+..-+-+ |.-|...|+.|..|...
T Consensus 75 EE~isN~LlKk-l~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~ 153 (310)
T PF09755_consen 75 EEFISNTLLKK-LQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSA 153 (310)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhhcchHHHHHHHHHHHh
Q 026318 175 ARRAFEFEKKANEEQIEQKQAMENN 199 (240)
Q Consensus 175 ~Raa~EyEKK~~~e~~Eq~qaMEkn 199 (240)
....++ ....+.++.--++|..
T Consensus 154 ~q~~le---~Lr~EKVdlEn~LE~E 175 (310)
T PF09755_consen 154 KQEELE---RLRREKVDLENTLEQE 175 (310)
T ss_pred hHHHHH---HHHHHHHhHHHHHHHH
No 374
>PF14282 FlxA: FlxA-like protein
Probab=34.32 E-value=1.6e+02 Score=23.38 Aligned_cols=23 Identities=13% Similarity=0.406 Sum_probs=13.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 026318 155 NKQLIAMRADIDGIRSELVEARR 177 (240)
Q Consensus 155 ~qqip~l~aEid~lrqElqr~Ra 177 (240)
.+++-.|.++|..|...|..+..
T Consensus 50 ~~q~q~Lq~QI~~LqaQI~qlq~ 72 (106)
T PF14282_consen 50 QQQIQLLQAQIQQLQAQIAQLQS 72 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666655443
No 375
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=34.23 E-value=2.2e+02 Score=25.39 Aligned_cols=58 Identities=22% Similarity=0.339 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhccc
Q 026318 158 LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERR 220 (240)
Q Consensus 158 ip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaElanaekR 220 (240)
.-.+.+.|.+++.+..|++.-++ |.. .++.+-..|.-|-..-.|||.+.+.+..-+.|
T Consensus 134 y~D~~arl~~l~~~~~rl~~ll~--ka~---~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 134 YVDLEARLKNLEAEEERLLELLE--KAK---TVEDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566778888888888888877 222 67778888999999999999999988765544
No 376
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=34.16 E-value=36 Score=24.91 Aligned_cols=19 Identities=42% Similarity=0.630 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHhhhccc
Q 026318 202 SMAREIEKLRAELLNTERR 220 (240)
Q Consensus 202 sMarEvEKLRaElanaekR 220 (240)
.++..+++|.+||++.|.|
T Consensus 35 ~i~~al~~Lk~EIaklE~R 53 (53)
T PF08898_consen 35 DIAAALEKLKAEIAKLEAR 53 (53)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 4567788999999998865
No 377
>PRK00106 hypothetical protein; Provisional
Probab=34.01 E-value=5.4e+02 Score=26.44 Aligned_cols=42 Identities=14% Similarity=0.209 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 026318 138 TTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (240)
Q Consensus 138 t~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (240)
..+-..|.+....+...-+.+-....+++...+++......+
T Consensus 107 ~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~ 148 (535)
T PRK00106 107 TERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQV 148 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444433344444444444444444444444444433
No 378
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=33.95 E-value=2.3e+02 Score=22.20 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=14.4
Q ss_pred HHHHHhhHHHHHHHhhhhhhhhhhhhH
Q 026318 68 QRELTASKDEIHRLGQIIPKLRADKEA 94 (240)
Q Consensus 68 rqeL~aaq~El~~l~~~i~~i~ae~e~ 94 (240)
+++|+.++.++......+..+....+.
T Consensus 19 ~~~la~~~~~~~~~~~~l~~l~~~~~~ 45 (141)
T TIGR02473 19 KLELAKAQAEFERLETQLQQLIKYREE 45 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666655555555554444443
No 379
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=33.83 E-value=7.2e+02 Score=27.87 Aligned_cols=128 Identities=17% Similarity=0.252 Sum_probs=60.0
Q ss_pred hhHhHHHHHhhhhhhhhhhhcchh-----hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hHHH
Q 026318 92 KEAHTRELFDRGLKLEVELRASEP-----VRAEV-VQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ----LIAM 161 (240)
Q Consensus 92 ~e~q~Rel~ek~~KmEAelRa~e~-----lk~El-~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qq----ip~l 161 (240)
|+.-+-++|+-+.||-.||+|... +-.|- -|--.|.+.....-++|-.+++.+.+.|......... --.|
T Consensus 402 K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l 481 (1041)
T KOG0243|consen 402 KKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELL 481 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 567778888888888888877621 01110 0222333344444444444444444444444433321 1123
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcchHHHHH-------HHHHHHhHHHHHHHHHHHHHHHhhhcc
Q 026318 162 RADIDGIRSELVEARRAFEFEKKANEEQIEQ-------KQAMENNLISMAREIEKLRAELLNTER 219 (240)
Q Consensus 162 ~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq-------~qaMEknlisMarEvEKLRaElanaek 219 (240)
+.+.+.+...|+.-=..++-.++.+.+...+ .+.|+++-....+-..+||..+..+-.
T Consensus 482 ~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~ 546 (1041)
T KOG0243|consen 482 KEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQD 546 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333 344445544555556777777665543
No 380
>PLN02678 seryl-tRNA synthetase
Probab=33.78 E-value=2.7e+02 Score=27.80 Aligned_cols=15 Identities=13% Similarity=0.255 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 026318 160 AMRADIDGIRSELVE 174 (240)
Q Consensus 160 ~l~aEid~lrqElqr 174 (240)
.+..+++.+..++..
T Consensus 89 ~le~~~~~~~~~l~~ 103 (448)
T PLN02678 89 EKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 381
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=33.69 E-value=3.8e+02 Score=24.55 Aligned_cols=8 Identities=38% Similarity=0.796 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 026318 203 MAREIEKL 210 (240)
Q Consensus 203 MarEvEKL 210 (240)
|-.||+.|
T Consensus 289 l~~ei~~L 296 (297)
T PF02841_consen 289 LQKEIQDL 296 (297)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 33344433
No 382
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=33.53 E-value=3.1e+02 Score=23.61 Aligned_cols=32 Identities=25% Similarity=0.446 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTK 146 (240)
Q Consensus 115 ~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltq 146 (240)
..+.|-..+..-+..|.+.-..|..++..++.
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~ 117 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKNLSD 117 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44444444444444444444444444444433
No 383
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=33.31 E-value=3.6e+02 Score=24.26 Aligned_cols=32 Identities=16% Similarity=0.101 Sum_probs=22.8
Q ss_pred HHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHH
Q 026318 50 MHRIISENRHAIDDNTHLQRELTASKDEIHRL 81 (240)
Q Consensus 50 iqrLl~dNqRLAathvaLrqeL~aaq~El~~l 81 (240)
...+....-++|..|..|.+-|...-.+|...
T Consensus 62 w~~~~~~~E~~a~~H~~l~~~L~~~~~~i~~~ 93 (261)
T cd07674 62 WEVFRVSSDKLALCHLELMRKLNDLIKDINRY 93 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888999999999886444455544
No 384
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=33.30 E-value=2.4e+02 Score=22.27 Aligned_cols=40 Identities=18% Similarity=0.339 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 026318 130 LNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIR 169 (240)
Q Consensus 130 L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lr 169 (240)
|....+.|..+++.+.+.+...+......-.++..|+++.
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00584 4 LAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444445555554444444444444555555553
No 385
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=33.22 E-value=68 Score=23.56 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Q 026318 158 LIAMRADIDGIRSELVEARRAFE 180 (240)
Q Consensus 158 ip~l~aEid~lrqElqr~Raa~E 180 (240)
+|.+...|++++.|++..|..+|
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve 31 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVE 31 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777777777777776654
No 386
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=33.10 E-value=3.3e+02 Score=23.76 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=17.8
Q ss_pred HHHHHHhhhhhhHhhHHHHHHHH
Q 026318 50 MHRIISENRHAIDDNTHLQRELT 72 (240)
Q Consensus 50 iqrLl~dNqRLAathvaLrqeL~ 72 (240)
...++.+...++..|..+-+.|.
T Consensus 67 w~~i~~e~~~~a~~H~~~a~~l~ 89 (251)
T cd07653 67 FRSILNEVNDIAGQHELIAENLN 89 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888888888776
No 387
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=33.05 E-value=2.9e+02 Score=23.09 Aligned_cols=25 Identities=20% Similarity=0.443 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 126 EVQKLNSSRQELTTQIKGLTKDVNR 150 (240)
Q Consensus 126 e~q~L~a~RQELt~qvq~ltqeL~r 150 (240)
+|..|..--+-|-.+|..+...|..
T Consensus 36 EI~sL~~K~~~lE~eld~~~~~l~~ 60 (143)
T PF12718_consen 36 EITSLQKKNQQLEEELDKLEEQLKE 60 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443333333333333333333
No 388
>PRK12704 phosphodiesterase; Provisional
Probab=32.95 E-value=5.3e+02 Score=26.07 Aligned_cols=44 Identities=23% Similarity=0.284 Sum_probs=21.4
Q ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 106 LEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (240)
Q Consensus 106 mEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~ 149 (240)
|+..-...+..++++.....++.++......--.++.+||+|=+
T Consensus 112 L~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea 155 (520)
T PRK12704 112 LEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEA 155 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 33333334444455555555555555555555555555555533
No 389
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=32.45 E-value=93 Score=22.79 Aligned_cols=37 Identities=8% Similarity=0.171 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 026318 139 TQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEA 175 (240)
Q Consensus 139 ~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~ 175 (240)
+.+..|..=+..+..-+.+-+.+.+.++.|+.||-++
T Consensus 14 GDLa~MK~l~~~aeq~L~~~~~i~~al~~Lk~EIakl 50 (53)
T PF08898_consen 14 GDLAQMKALAAQAEQQLAEAGDIAAALEKLKAEIAKL 50 (53)
T ss_pred CcHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 3344444444444445555677777777777777654
No 390
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=32.43 E-value=1.8e+02 Score=22.48 Aligned_cols=41 Identities=20% Similarity=0.412 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 026318 129 KLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIR 169 (240)
Q Consensus 129 ~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lr 169 (240)
.|....+.|-.+++.+.+.+.+.......+-.++.+|+.+.
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00890 3 ELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555555555555555555555555666666676665
No 391
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=32.37 E-value=94 Score=26.34 Aligned_cols=59 Identities=25% Similarity=0.295 Sum_probs=41.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcc
Q 026318 152 EAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTER 219 (240)
Q Consensus 152 ~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaElanaek 219 (240)
..+..+.-.|+.|++.+++|+...-+.=||=|-++. +..+..+-.|++++..++.....
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl---------~Rk~~kl~~el~~~~~~~~~~~~ 94 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKL---------NRKLDKLEEELEKLNKSLSSEKS 94 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHH---------HHHHHHHHHHHHHHHHHHHHTCH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666778999999999999888777777666553 55666677777777777665443
No 392
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=32.12 E-value=3.3e+02 Score=23.45 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=11.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q 026318 191 EQKQAMENNLISMAREIEKLRAE 213 (240)
Q Consensus 191 Eq~qaMEknlisMarEvEKLRaE 213 (240)
.+...|+..+-.|-.+.+-|.+-
T Consensus 119 ~~l~~l~~kl~e~k~k~~~l~ar 141 (221)
T PF04012_consen 119 EQLEELEAKLEELKSKREELKAR 141 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555444444443
No 393
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=32.10 E-value=3e+02 Score=22.99 Aligned_cols=94 Identities=20% Similarity=0.354 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhh---hhH--HHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 026318 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLT---KDVNRLEAENK---QLI--AMRADIDGIRSELVEARRAFEFEKKAN 186 (240)
Q Consensus 115 ~lk~El~Q~r~e~q~L~a~RQELt~qvq~lt---qeL~r~~~d~q---qip--~l~aEid~lrqElqr~Raa~EyEKK~~ 186 (240)
..=+.++|++..++++...+|-+-++++... .||.++-.|.. .+. -++..-+.+..|+..-
T Consensus 10 ~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er----------- 78 (119)
T COG1382 10 AQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEER----------- 78 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHH-----------
Confidence 3445666777777777777776666654433 23333333320 000 0122333333333221
Q ss_pred hHHHH-HHHHHHHhHHHHHHHHHHHHHHHhhhcc
Q 026318 187 EEQIE-QKQAMENNLISMAREIEKLRAELLNTER 219 (240)
Q Consensus 187 ~e~~E-q~qaMEknlisMarEvEKLRaElanaek 219 (240)
.|.+| ..++.+++.=..-.++++|+++|-++=.
T Consensus 79 ~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 79 KETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22222 4567788887888889999988876543
No 394
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=32.08 E-value=5.4e+02 Score=25.86 Aligned_cols=20 Identities=30% Similarity=0.410 Sum_probs=11.9
Q ss_pred HHhHHHHHHHHHHHHHHHhh
Q 026318 197 ENNLISMAREIEKLRAELLN 216 (240)
Q Consensus 197 EknlisMarEvEKLRaElan 216 (240)
++|++.-+.-+++++.-|..
T Consensus 121 ~~~~~~Aa~~L~~~~~~L~~ 140 (593)
T PF06248_consen 121 EGNYLDAADLLEELKSLLDD 140 (593)
T ss_pred cCCHHHHHHHHHHHHHHHHh
Confidence 35566666666666666554
No 395
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=32.06 E-value=77 Score=22.62 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 026318 158 LIAMRADIDGIRSELVEARRAFEFEKKA 185 (240)
Q Consensus 158 ip~l~aEid~lrqElqr~Raa~EyEKK~ 185 (240)
|.+|+..++.|+.+++++.++|.-=||.
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKKa 28 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKKA 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888889999999988777664
No 396
>PRK10132 hypothetical protein; Provisional
Probab=31.79 E-value=2.8e+02 Score=22.50 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=11.7
Q ss_pred cccccccccc----chhhhhhhh
Q 026318 218 ERRACGLGKI----SFFLGALTW 236 (240)
Q Consensus 218 ekRa~~~~~~----g~~~~~~~~ 236 (240)
...||.+-++ |+.+|.|.+
T Consensus 83 ~~~Pw~svgiaagvG~llG~Ll~ 105 (108)
T PRK10132 83 RERPWCSVGTAAAVGIFIGALLS 105 (108)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHh
Confidence 3356654443 888888765
No 397
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=31.65 E-value=2.3e+02 Score=21.44 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=9.7
Q ss_pred hhhHhhHHHHHHHHhhHHH
Q 026318 59 HAIDDNTHLQRELTASKDE 77 (240)
Q Consensus 59 RLAathvaLrqeL~aaq~E 77 (240)
.+.+|...|+.|+...+.+
T Consensus 15 ~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544
No 398
>PRK14142 heat shock protein GrpE; Provisional
Probab=31.59 E-value=2.8e+02 Score=25.47 Aligned_cols=65 Identities=6% Similarity=0.029 Sum_probs=40.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHH
Q 026318 12 DSARGFRDGPRPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEI 78 (240)
Q Consensus 12 ~~~rg~~~~p~p~~~r~~~~~~p~p~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El 78 (240)
-++|+|.-..+|...++||..|+--+. .-++.++.++..|-..-.|+.++---+|+-...-+.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~e~~elkdk~lR~~AEfEN~RKR~erE~e~~ 77 (223)
T PRK14142 13 TDKRRIDPETGEVRHVPPGDMPGGTAA--ADAAHTEDKVAELTADLQRVQADFANYRKRALRDQQAA 77 (223)
T ss_pred ccccccCCCCCCcCCCCCCCCCCCCCC--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666222233335556665433332 34567888888888777888888888887665544444
No 399
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=31.42 E-value=2.3e+02 Score=24.36 Aligned_cols=79 Identities=14% Similarity=0.268 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHH
Q 026318 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQA 195 (240)
Q Consensus 116 lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qa 195 (240)
++.|+..++..-.+.++. -.++|+.++. .-.+-...|+.|.++++.-+||++- ++.+.+.|.|-
T Consensus 60 lq~dl~tLretfsNFsss---t~aEvqaL~S---~G~sl~~kVtSLea~lEkqqQeLkA----------dhS~lllhvk~ 123 (138)
T PF03954_consen 60 LQRDLRTLRETFSNFSSS---TLAEVQALSS---QGGSLQDKVTSLEAKLEKQQQELKA----------DHSTLLLHVKQ 123 (138)
T ss_pred HHHHHHHHHHHHhcccHH---HHHHHHHHHh---ccccHHhHcccHHHHHHHHHHHHhh----------hHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHH
Q 026318 196 MENNLISMAREIEKL 210 (240)
Q Consensus 196 MEknlisMarEvEKL 210 (240)
.=++|-+.+-.+.-|
T Consensus 124 ~~~DLr~LsCQma~l 138 (138)
T PF03954_consen 124 FPKDLRSLSCQMAFL 138 (138)
T ss_pred HHHHHhhhhhhhhcC
No 400
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=31.35 E-value=1.8e+02 Score=23.85 Aligned_cols=68 Identities=24% Similarity=0.352 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhh-----hhhhhhhhhHhHHHHHhhhhhhhhhhhcchh
Q 026318 48 REMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQI-----IPKLRADKEAHTRELFDRGLKLEVELRASEP 115 (240)
Q Consensus 48 ~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~-----i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~ 115 (240)
.|.+.|+-.=+.+...-+.++.++.....+|+-.+.. ...--..-..+++++++.+..+=.+++..++
T Consensus 6 ~EA~~lLP~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~Gv~vKd~~~ 78 (120)
T PF09969_consen 6 EEANALLPLLRPILEEIRELKAELEELEERLQELEDSLEVNGLEAELEELEARLRELIDEIEELGVEVKDLDP 78 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHHHHHHcCcEEeCCcc
No 401
>KOG1981 consensus SOK1 kinase belonging to the STE20/SPS1/GC kinase family [Signal transduction mechanisms]
Probab=31.27 E-value=6.1e+02 Score=26.21 Aligned_cols=130 Identities=20% Similarity=0.249 Sum_probs=73.5
Q ss_pred HHHHHH-HhhhhhhHhh------HHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHH
Q 026318 49 EMHRII-SENRHAIDDN------THLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVV 121 (240)
Q Consensus 49 EiqrLl-~dNqRLAath------vaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~ 121 (240)
++-.++ -+|+|+-+.. -.|+|++....=++.-+.-.+-++ .. |--.|+|+|-.
T Consensus 141 ~L~~~llp~~~r~r~eInevLD~dll~Qele~G~Ldi~~L~~fvl~l--------------l~------~lCAPaRDe~V 200 (513)
T KOG1981|consen 141 TLLDLLLPVHTRLRAEINEVLDTDLLRQELESGTLDISYLSEFVLDL--------------LS------RLCAPARDEEV 200 (513)
T ss_pred HHHHHhCCccHHHHHHHHHHHhHHHHHHHHHcCCchHHHHHHHHHHH--------------HH------HhcCCcccHHH
Confidence 444444 6666765544 357777777776666664444322 11 22347777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHH
Q 026318 122 QLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLI 201 (240)
Q Consensus 122 Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknli 201 (240)
+--..+..++-.=...-.+++.|..|++ +-+|-. +|=.|+ =..+|||||.+-+.+.|.- .+|-
T Consensus 201 ~~l~~itdvV~~~R~Ilq~l~lMK~Dia-----N~~I~~-------lrp~L~--~~sveyEkk~Fqk~l~~~~---~~l~ 263 (513)
T KOG1981|consen 201 AKLRSITDVVDGFRGILQLLELMKLDIA-----NYQIRI-------LRPALQ--ENSVEYEKKKFQKLLGQAP---VSLP 263 (513)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH-------hhHHHH--HhhHHHHHHHHHHHHhhCC---CCCc
Confidence 6333344444333444445555555555 223333 444445 4789999999999998432 1334
Q ss_pred HHHHHHHHHHHHHh
Q 026318 202 SMAREIEKLRAELL 215 (240)
Q Consensus 202 sMarEvEKLRaEla 215 (240)
.--+=+.+.|.|+.
T Consensus 264 ~t~~WL~~~~~e~~ 277 (513)
T KOG1981|consen 264 FTRQWLDKARSELE 277 (513)
T ss_pred HHHHHHHHHhcccc
Confidence 44556777777776
No 402
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=31.16 E-value=1.2e+02 Score=29.38 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=45.8
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhh
Q 026318 32 MHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQ 83 (240)
Q Consensus 32 ~~p~p~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~ 83 (240)
+|.....+++++..-..+++.|-..|..+......+++++...+.|+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 13 TTHTERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4445567888888888899999999999999999999999999999999874
No 403
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=31.04 E-value=3.9e+02 Score=23.88 Aligned_cols=51 Identities=22% Similarity=0.219 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 026318 130 LNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEK 183 (240)
Q Consensus 130 L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEK 183 (240)
+...|..+...-..+.+++.-+-+.+ .--+.--+.+.+|+-++|..-.|++
T Consensus 102 ~e~~RK~~ke~~~k~~k~~~~a~~~l---eKAK~~Y~~~c~e~Ekar~~~~~~~ 152 (234)
T cd07652 102 VEKSRKSIKETGKRAEKKVQDAEAAA---EKAKARYDSLADDLERVKTGDPGKK 152 (234)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccCCCcc
Confidence 33444444444444444444333332 3356667778888888888755665
No 404
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=30.93 E-value=90 Score=21.65 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=12.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 114 EPVRAEVVQLRAEVQKLNSSRQELTTQI 141 (240)
Q Consensus 114 e~lk~El~Q~r~e~q~L~a~RQELt~qv 141 (240)
+.++++-.-+..|.++|.+.-+.|++++
T Consensus 15 d~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 15 DSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444444444443
No 405
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=30.71 E-value=2.7e+02 Score=22.05 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 117 RAEVVQLRAEVQKLNSSRQELTTQIKGL 144 (240)
Q Consensus 117 k~El~Q~r~e~q~L~a~RQELt~qvq~l 144 (240)
|.++..+...+.+...-=+.+-+++..+
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~L 61 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHL 61 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455555444444433334444444444
No 406
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=30.69 E-value=79 Score=31.97 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhh
Q 026318 44 EIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQ 83 (240)
Q Consensus 44 a~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~ 83 (240)
....+.+..|...|.+|+++-...|++|...+.+|.+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 43 (512)
T TIGR03689 4 RELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQ 43 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456778899999999999999999999999999999974
No 407
>PF10704 DUF2508: Protein of unknown function (DUF2508); InterPro: IPR019644 This entry represents a protein family of unknown function that is conserved in the firmicutes.
Probab=30.63 E-value=2.2e+02 Score=21.03 Aligned_cols=49 Identities=29% Similarity=0.300 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHH
Q 026318 159 IAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREI 207 (240)
Q Consensus 159 p~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEv 207 (240)
..|..+|+..++|++++|..|+.--...-+..=|.++-|..+.=+-+|+
T Consensus 15 ~~Ll~~I~~ak~ew~~a~~~~~~~~D~~d~~iy~~k~ae~kY~fLlreA 63 (71)
T PF10704_consen 15 EELLEEIEQAKQEWENARRLFENVVDLIDEAIYQLKAAEAKYFFLLREA 63 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999888877777778888888776665554
No 408
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=30.61 E-value=3.8e+02 Score=23.61 Aligned_cols=85 Identities=14% Similarity=0.257 Sum_probs=70.4
Q ss_pred hHHHHHhhhhhhhhhhh----cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 026318 95 HTRELFDRGLKLEVELR----ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRS 170 (240)
Q Consensus 95 q~Rel~ek~~KmEAelR----a~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrq 170 (240)
++-.+.++--++|-+|- ..+..++=+.-.+.++..|...=++|..-+.-+++|+.=..+.+-|...+ ++|.|..
T Consensus 45 ~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~--~veel~e 122 (157)
T COG3352 45 VIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRG--IVEELEE 122 (157)
T ss_pred HHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHH--HHHHHHH
Confidence 45566777788899999 66889999999999999999999999999999999999999988887777 7777777
Q ss_pred HHHHHHHhhhh
Q 026318 171 ELVEARRAFEF 181 (240)
Q Consensus 171 Elqr~Raa~Ey 181 (240)
++-..+--++-
T Consensus 123 qV~el~~i~em 133 (157)
T COG3352 123 QVNELKMIVEM 133 (157)
T ss_pred HHHHHHHHHHH
Confidence 76665544443
No 409
>smart00338 BRLZ basic region leucin zipper.
Probab=30.61 E-value=1.7e+02 Score=20.68 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhhhhhHhhHHHHHHHHhhHHH
Q 026318 47 RREMHRIISENRHAIDDNTHLQRELTASKDE 77 (240)
Q Consensus 47 ~~EiqrLl~dNqRLAathvaLrqeL~aaq~E 77 (240)
..+++.|-.+|..|......|++++...+++
T Consensus 32 e~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 32 ERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666555544
No 410
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=30.56 E-value=3.2e+02 Score=25.91 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=33.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 026318 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADID 166 (240)
Q Consensus 113 ~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid 166 (240)
.+.+|.++.++-.++-+|.+.|..++.+|-.+.++-. +|.+..+.+
T Consensus 5 L~~lR~~ID~iD~~iv~Ll~~R~~~~~~ia~~K~~~~--------~~v~d~~Re 50 (374)
T PRK11199 5 LTALRDQIDEVDKQLLELLAKRLELVAQVGEVKSRHG--------LPIYVPERE 50 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------CCCCChHHH
Confidence 4578888888888888888889888888866655432 465555544
No 411
>PHA01750 hypothetical protein
Probab=30.45 E-value=1.3e+02 Score=23.26 Aligned_cols=35 Identities=26% Similarity=0.519 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDV 148 (240)
Q Consensus 114 e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL 148 (240)
|-++.||.-++.+++.+.---.+|+.||..+.+.+
T Consensus 38 eIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 38 EIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 67889999999999988865566777776665544
No 412
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=30.42 E-value=8.4e+02 Score=27.61 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HhhhhhHHHHHHHHHHHHHHHHHH
Q 026318 129 KLNSSRQELTTQIKGLTKDVNRLE------AENKQLIAMRADIDGIRSELVEAR 176 (240)
Q Consensus 129 ~L~a~RQELt~qvq~ltqeL~r~~------~d~qqip~l~aEid~lrqElqr~R 176 (240)
.+...+-.+.++...+..||.-.- -|.+++..|.-||+.|.+++-..+
T Consensus 752 ~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~ 805 (1200)
T KOG0964|consen 752 EIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALR 805 (1200)
T ss_pred HHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344445555555555555543222 255666666666666666665443
No 413
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=30.23 E-value=6.4e+02 Score=26.16 Aligned_cols=51 Identities=10% Similarity=0.216 Sum_probs=28.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHH
Q 026318 150 RLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLR 211 (240)
Q Consensus 150 r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLR 211 (240)
+...+.-.+..+++.+..|++++...++. +.+.-..|+.+..+-|+++-.+
T Consensus 333 ~~~~~hP~v~~l~~~~~~L~~~~~~l~~~-----------~~~~p~~e~~~~~L~R~~~~~~ 383 (726)
T PRK09841 333 LYKKDHPTYRALLEKRQTLEQERKRLNKR-----------VSAMPSTQQEVLRLSRDVEAGR 383 (726)
T ss_pred HhcccCchHHHHHHHHHHHHHHHHHHHHH-----------HHhccHHHHHHHHHHHHHHHHH
Confidence 34455556666666777776666555432 2334444555555555555444
No 414
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=30.10 E-value=1.9e+02 Score=20.51 Aligned_cols=14 Identities=7% Similarity=0.323 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 026318 162 RADIDGIRSELVEA 175 (240)
Q Consensus 162 ~aEid~lrqElqr~ 175 (240)
+.+.+.|..|+..+
T Consensus 37 ~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 37 KKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHh
Confidence 33344444444443
No 415
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=29.67 E-value=5.2e+02 Score=24.95 Aligned_cols=101 Identities=14% Similarity=0.234 Sum_probs=50.6
Q ss_pred HHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 026318 99 LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRA 178 (240)
Q Consensus 99 l~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa 178 (240)
.+.||..||..+ |-|++|-+|=.--+..|.++-|-=-.+ ++.-+.|+-.|+.|.|.+.-.
T Consensus 16 aLqKIqelE~Ql---dkLkKE~qQrQfQleSlEAaLqKQKqK-----------------~e~ek~e~s~LkREnq~l~e~ 75 (307)
T PF10481_consen 16 ALQKIQELEQQL---DKLKKERQQRQFQLESLEAALQKQKQK-----------------VEEEKNEYSALKRENQSLMES 75 (307)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHH-----------------HHHHhhhhhhhhhhhhhHHHH
Confidence 356666666543 456666666555555555554443333 444444555555555555555
Q ss_pred hhhhhhcchHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHhhhcc
Q 026318 179 FEFEKKANEEQIE--------------QKQAMENNLISMAREIEKLRAELLNTER 219 (240)
Q Consensus 179 ~EyEKK~~~e~~E--------------q~qaMEknlisMarEvEKLRaElanaek 219 (240)
|+.--|.+-.... |...-.+.+-..-.|+-+++.||.++-.
T Consensus 76 c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 76 CENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQ 130 (307)
T ss_pred HHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444443333222 2222334444555566666666665443
No 416
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=29.66 E-value=7.5e+02 Score=28.36 Aligned_cols=142 Identities=17% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcc---------hhhHHHHHHHHH-------HHHHHHHH
Q 026318 70 ELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRAS---------EPVRAEVVQLRA-------EVQKLNSS 133 (240)
Q Consensus 70 eL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~---------e~lk~El~Q~r~-------e~q~L~a~ 133 (240)
.|...|+||.-|..--..+...+|- -=+--+.|||..|+.. ..+-+++.-+-. ||++..+.
T Consensus 1132 ~lnnlqqElklLRnEK~Rmh~~~dk---VDFSDIEkLE~qLq~~~~kL~dAyl~eitKqIsaLe~e~PKnltdvK~miss 1208 (1439)
T PF12252_consen 1132 NLNNLQQELKLLRNEKIRMHSGTDK---VDFSDIEKLEKQLQVIHTKLYDAYLVEITKQISALEKEKPKNLTDVKSMISS 1208 (1439)
T ss_pred HHHHHHHHHHHHHhHHHhhccCCCc---ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--------------------HHhhhhhhhcchHHHHHH
Q 026318 134 RQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEA--------------------RRAFEFEKKANEEQIEQK 193 (240)
Q Consensus 134 RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~--------------------Raa~EyEKK~~~e~~Eq~ 193 (240)
=-+-++.+..+.+|--|.++...---.| .+||.|+..||.. ..+|+-++|.--.++++.
T Consensus 1209 f~d~laeiE~LrnErIKkHGaSkePLDl-SDlDkLk~~LQ~iNQ~LV~~LIn~iR~slnqme~~tf~~q~~eiq~n~~ll 1287 (1439)
T PF12252_consen 1209 FNDRLAEIEFLRNERIKKHGASKEPLDL-SDLDKLKGQLQKINQNLVKALINTIRVSLNQMEVKTFEEQEKEIQQNLQLL 1287 (1439)
T ss_pred HHhhhhHHHHHHHHHhhccCCCCCccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhh
Q 026318 194 QAMENNLISMAREIEKLRAELLN 216 (240)
Q Consensus 194 qaMEknlisMarEvEKLRaElan 216 (240)
-.++|.|.+ ..=.+|+|.++.+
T Consensus 1288 ~~L~~tlD~-S~~a~Kqk~di~k 1309 (1439)
T PF12252_consen 1288 DKLEKTLDD-SDTAQKQKEDIVK 1309 (1439)
T ss_pred HHHHHHhcc-hHHHHHHHHHHHH
No 417
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=29.56 E-value=1.9e+02 Score=26.75 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=20.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhhcccc
Q 026318 194 QAMENNLISMAREIEKLRAELLNTERRA 221 (240)
Q Consensus 194 qaMEknlisMarEvEKLRaElanaekRa 221 (240)
...-+++-.|..++.+|..=|.|...|+
T Consensus 44 ~~~~~~~~~l~~~~~~L~~aL~~~k~rG 71 (304)
T PF02646_consen 44 SEANGEIQQLSQEASNLTSALKNSKTRG 71 (304)
T ss_pred HHhhhHHHHHHHHHHHHHHHHhCCCchh
Confidence 3344556688888888888888777665
No 418
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=29.56 E-value=3.4e+02 Score=22.76 Aligned_cols=83 Identities=19% Similarity=0.252 Sum_probs=53.2
Q ss_pred hhhhhhhhhhhcchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 026318 101 DRGLKLEVELRASEPVRAEVVQLRAEVQ-KLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (240)
Q Consensus 101 ek~~KmEAelRa~e~lk~El~Q~r~e~q-~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (240)
+|..++..+|...+..+.|..+...+.+ +|..+|.+-..-+.....+-.....+. +-..+.|.+.+ +..++..+
T Consensus 41 ~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~a~~~~~~~--~~~A~~ea~~~---~~~A~~~I 115 (167)
T PRK14475 41 AYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAAKADARRMEAEA--KEKLEEQIKRR---AEMAERKI 115 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH---HHHHHHHH
Confidence 5566777788888888888888877765 456667766666666666655443332 23334444444 45788888
Q ss_pred hhhhhcchH
Q 026318 180 EFEKKANEE 188 (240)
Q Consensus 180 EyEKK~~~e 188 (240)
+.|++.-..
T Consensus 116 ~~e~~~a~~ 124 (167)
T PRK14475 116 AQAEAQAAA 124 (167)
T ss_pred HHHHHHHHH
Confidence 888875443
No 419
>TIGR01808 CM_M_hiGC-arch monofunctional chorismate mutase, high GC gram positive type. This model represents the monofunctional chorismate mutase from high GC gram-positive bacteria and archaea. Trusted annotations from Corynebacterium and Pyrococcus are aparrently the sole chorismate mutase enzymes in their respective genomes. This is coupled with the presence in those genomes of the enzymes of the chorismate pathways both up- and downstream of chorismate mutase.
Probab=29.33 E-value=1.6e+02 Score=21.93 Aligned_cols=34 Identities=26% Similarity=0.374 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (240)
Q Consensus 114 e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqe 147 (240)
+.+|.++.++-.++-+|.+.|..++.+|..+.+.
T Consensus 3 ~~lR~~ID~ID~~ii~LL~~R~~~~~~i~~~K~~ 36 (74)
T TIGR01808 3 DTLREEIDRLDAEILALVKRRAEISQAIGKARMA 36 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688888888888889999999988888666554
No 420
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=29.27 E-value=7.8e+02 Score=27.69 Aligned_cols=129 Identities=15% Similarity=0.209 Sum_probs=72.8
Q ss_pred HHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhh--hhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHH
Q 026318 53 IISENRHAIDDNTHLQRELTASKDEIHRLGQIIPK--LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKL 130 (240)
Q Consensus 53 Ll~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~--i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L 130 (240)
....|-|++..|+-|+.-+..+.-=.--=+++... +..+.=...|.++...--++ +....+-.++.-+++++..+
T Consensus 572 ~~~~~~r~~~~~~~~~~~i~g~~~~~i~~S~ygs~~v~~~~~~lk~~~f~~~~~~l~---~~~~~~ee~~~~~~~~~~~~ 648 (1072)
T KOG0979|consen 572 EVLQNIRQPNGSVFLKRNIAGGRSKSIKKSAYGSRQVITRNDPLKSRNFFSVSPVLE---ELDNRIEEEIQKLKAEIDIR 648 (1072)
T ss_pred HHHhccccCCCchhHHHHhhcCchhhhhhhccccceeeecCCcchhhhhhccchHHH---HHHHHHHHHHHHHHHHHhhh
Confidence 34457788888888887776543211111111111 11111223333433322222 11112234445567778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 026318 131 NSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKK 184 (240)
Q Consensus 131 ~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK 184 (240)
.+.+-+|..+++...+||...+..++.+---+.++..-...++.--+.+|..++
T Consensus 649 ~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~~~~ 702 (1072)
T KOG0979|consen 649 SSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIENLVV 702 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 888888888888888888877776666666666666666677777777776543
No 421
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=28.86 E-value=4.2e+02 Score=23.59 Aligned_cols=73 Identities=19% Similarity=0.218 Sum_probs=48.3
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhhhhHhhHH----HH-------HHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhh
Q 026318 36 PMTLEEEIEIQRREMHRIISENRHAIDDNTH----LQ-------RELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGL 104 (240)
Q Consensus 36 p~~LEe~La~Q~~EiqrLl~dNqRLAathva----Lr-------qeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~ 104 (240)
|..|.+.+..+..+|+ .+.+.|++.|-. |+ .+++..+++|+.|. .|..++..-|.+|..|=+...
T Consensus 20 i~~L~~q~~~~~~~i~---~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~-~~~~~k~~qe~eI~~Le~e~~ 95 (206)
T PF14988_consen 20 IEKLWKQYIQQLEEIQ---RERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALK-EFRRLKEQQEREIQTLEEELE 95 (206)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777775 466666666654 22 24455677777774 456778888888888887777
Q ss_pred hhhhhhhc
Q 026318 105 KLEVELRA 112 (240)
Q Consensus 105 KmEAelRa 112 (240)
+++++-.+
T Consensus 96 ~~~~e~~~ 103 (206)
T PF14988_consen 96 KMRAEHAE 103 (206)
T ss_pred HHHHHHHH
Confidence 77776554
No 422
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=28.80 E-value=5.6e+02 Score=26.32 Aligned_cols=133 Identities=15% Similarity=0.192 Sum_probs=80.2
Q ss_pred CCCCCccchHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhh
Q 026318 31 PMHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVEL 110 (240)
Q Consensus 31 ~~~p~p~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAel 110 (240)
|.||+-..+=.=|..-..|-..++-+| ..|||.|.-++|||-+- ||+. +|-.
T Consensus 61 pk~~satSIPalL~~lQdEWDavML~~-------F~LRqqL~ttrQELSha-----------------LYqh----DAAc 112 (506)
T KOG0289|consen 61 PKPPSATSIPALLKTLQDEWDAVMLES-------FTLRQQLQTTRQELSHA-----------------LYQH----DAAC 112 (506)
T ss_pred CCCCCccchHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHH-----------------HHhh----hHHH
Confidence 344444455556677777888877776 67899999999998765 3332 3444
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHhh-
Q 026318 111 RASEPVRAEVVQLRAEVQKLNSSRQELTTQ--------IKGLTKDVNRLEAENK--QLIAMRADIDGIRSELVEARRAF- 179 (240)
Q Consensus 111 Ra~e~lk~El~Q~r~e~q~L~a~RQELt~q--------vq~ltqeL~r~~~d~q--qip~l~aEid~lrqElqr~Raa~- 179 (240)
|-..-|.+|+.-+|-..-+| .+.-.+- .|.=....+.-.++.| --|.++..++.--|+|-+-|..+
T Consensus 113 rViaRL~kE~~eareaLa~~---~~qa~a~~peav~~~~~~s~~~va~ge~~d~~g~s~~i~~~l~~~aq~ls~~rKkrg 189 (506)
T KOG0289|consen 113 RVIARLTKERDEAREALAKL---SPQAGAIVPEAVPSLAQSSVVGVAAGESEDQPGLSPEIIQKLEDKAQVLSQERKKRG 189 (506)
T ss_pred HHHHHHHHHHHHHHHHHhhc---CcccccccccccccccccchhhhhcCCccccccCCHHHHHHHHHHHHHHHHHhhhcc
Confidence 55555556655555433222 2221121 1222233444555666 56778888888888888877777
Q ss_pred --hhhhhcchHHHHHHH
Q 026318 180 --EFEKKANEEQIEQKQ 194 (240)
Q Consensus 180 --EyEKK~~~e~~Eq~q 194 (240)
..||-.+.+.+.++.
T Consensus 190 ~k~p~~la~~d~~~~~~ 206 (506)
T KOG0289|consen 190 KKLPEKLATTDELSCLL 206 (506)
T ss_pred ccCCcccccHHHHHHHH
Confidence 556777777666554
No 423
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=28.67 E-value=6.8e+02 Score=25.98 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=54.6
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 65 THLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGL 144 (240)
Q Consensus 65 vaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~l 144 (240)
++|...+. +.-+-|+.-|..++.|-+--+|..++++...-.++.+ -+..++--|.+|-..=.+++.+.-..
T Consensus 368 ~aLs~rld---~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~------~l~~v~eKVd~LpqqI~~vs~Kc~~~ 438 (531)
T PF15450_consen 368 LALSWRLD---LQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEK------HLKEVQEKVDSLPQQIEEVSDKCDLH 438 (531)
T ss_pred HHHhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 55655543 3334556666777777777777777776654443322 11122222222222222333333222
Q ss_pred HHHHHHHHHhhhhh---HHHHHHHHHHHHHHHHHHHhhhhhhhcchH
Q 026318 145 TKDVNRLEAENKQL---IAMRADIDGIRSELVEARRAFEFEKKANEE 188 (240)
Q Consensus 145 tqeL~r~~~d~qqi---p~l~aEid~lrqElqr~Raa~EyEKK~~~e 188 (240)
..| +|..-. -+..-||+.+|+||-..=+.+-|=|.+++-
T Consensus 439 Ksd-----~d~kIdtE~k~R~~eV~~vRqELa~lLssvQ~~~e~~~~ 480 (531)
T PF15450_consen 439 KSD-----SDTKIDTEGKAREREVGAVRQELATLLSSVQLLKEDNPG 480 (531)
T ss_pred Hhh-----hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh
Confidence 222 222211 234457777777777766677776666654
No 424
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.58 E-value=3.1e+02 Score=25.63 Aligned_cols=31 Identities=16% Similarity=0.383 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 122 QLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (240)
Q Consensus 122 Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~ 152 (240)
-++.|+.++....+.|.++|..+++.+...+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555444
No 425
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=28.33 E-value=4.5e+02 Score=23.75 Aligned_cols=101 Identities=16% Similarity=0.291 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHH-------HHHHHHHHhhhhhhhcc
Q 026318 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN-KQLIAMRADIDGIR-------SELVEARRAFEFEKKAN 186 (240)
Q Consensus 115 ~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~-qqip~l~aEid~lr-------qElqr~Raa~EyEKK~~ 186 (240)
.++.=...++.|+..++.....|+.++....+.+......- +.-..+...++.++ +.+..+|..|+..-+.
T Consensus 58 Tl~~sw~~~~~E~e~~a~~H~~la~~L~~~~~~~~~f~~~qk~~rKk~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke- 136 (240)
T cd07672 58 TLKRSLDVFKQQIDNVGQSHIQLAQTLRDEAKKMEDFRERQKLARKKIELIMDAIHKQRAMQFKKTMESKKNYEQKCRD- 136 (240)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 78888899999999999999999999988776566653322 12233445555553 4556667776665554
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 026318 187 EEQIEQKQAMENNLISMAREIEKLRAELLNT 217 (240)
Q Consensus 187 ~e~~Eq~qaMEknlisMarEvEKLRaElana 217 (240)
.+...|.-.=-.|+ .+.+|++|+++-|.++
T Consensus 137 ~~~a~~~~~~~~~~-~~~ke~~K~~~Kl~K~ 166 (240)
T cd07672 137 KDEAEQAVNRNANL-VNVKQQEKLFAKLAQS 166 (240)
T ss_pred HHHHHHHHhhccCC-CCHHHHHHHHHHHHHH
Confidence 33332210000122 2367788877766543
No 426
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=28.03 E-value=2.2e+02 Score=28.30 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 026318 157 QLIAMRADIDGIRSELVEARRAF 179 (240)
Q Consensus 157 qip~l~aEid~lrqElqr~Raa~ 179 (240)
..+.++..++.+++|++.+|...
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~ 385 (448)
T PF05761_consen 363 SSSELRPDISELRKERRELRREM 385 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666544
No 427
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=27.99 E-value=2.7e+02 Score=28.72 Aligned_cols=45 Identities=16% Similarity=0.145 Sum_probs=22.7
Q ss_pred HHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhh
Q 026318 66 HLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVEL 110 (240)
Q Consensus 66 aLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAel 110 (240)
.++|.+...++||.++.+.......|.....+.+-+....+++.+
T Consensus 343 ~~~q~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l 387 (656)
T PRK06975 343 ALNRKVDRLDQELVQRQQANDAQTAELRVKTEQAQASVHQLDSQF 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666555555555554444444444444444433
No 428
>COG5613 Uncharacterized conserved protein [Function unknown]
Probab=27.99 E-value=6.1e+02 Score=25.34 Aligned_cols=104 Identities=15% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhhhhHH--------------HHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHH
Q 026318 131 NSSRQELTTQIKGLTKDVNRL-EAENKQLIA--------------MRADIDGIRSELVEARRAFEFEKKANEEQIEQKQA 195 (240)
Q Consensus 131 ~a~RQELt~qvq~ltqeL~r~-~~d~qqip~--------------l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qa 195 (240)
.+.+++++.-+|++++++.++ +.-+-+... .+.|+-+|-.+..-++.-+++=..--...--+.|.
T Consensus 69 s~~~~v~~kl~qsv~~~v~~atev~~a~rs~~~yl~q~~laspq~feielakl~s~ve~aqKv~k~l~~ne~~m~qn~kk 148 (400)
T COG5613 69 SAAEDVLSKLFQSVSGEVTSATEVAEAQRSSYPYLSQVNLASPQQFEIELAKLLSLVESAQKVSKLLNSNEIYMDQNTKK 148 (400)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHhccccchHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHhhHHH
Q ss_pred HHHhHHHHHHHHHHHHHHHhhhccccccccccchhhhhhhhhhc
Q 026318 196 MENNLISMAREIEKLRAELLNTERRACGLGKISFFLGALTWSIL 239 (240)
Q Consensus 196 MEknlisMarEvEKLRaElanaekRa~~~~~~g~~~~~~~~~~~ 239 (240)
||.| ..++-|--+|-..+++-+.++.+.|..- ++.|-|.
T Consensus 149 me~n----qqkikk~eeeak~~~ksg~askIfgw~S-afgs~iV 187 (400)
T COG5613 149 MENN----QQKIKKQEEEAKKAEKSGQASKIFGWVS-AFGSLIV 187 (400)
T ss_pred HHhh----HHHHHHHHHHHHHHHhcCcchHHHHHHH-HHHHHHH
No 429
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=27.95 E-value=3.5e+02 Score=22.39 Aligned_cols=31 Identities=10% Similarity=0.200 Sum_probs=18.2
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhhHhhHHHH
Q 026318 38 TLEEEIEIQRREMHRIISENRHAIDDNTHLQ 68 (240)
Q Consensus 38 ~LEe~La~Q~~EiqrLl~dNqRLAathvaLr 68 (240)
-++++|+.-..+|..+=..+-.|+...-.|+
T Consensus 13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~ 43 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQGELAKQKDQLR 43 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHH
Confidence 3566777777777666666666654444433
No 430
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=27.85 E-value=4.4e+02 Score=23.51 Aligned_cols=83 Identities=19% Similarity=0.154 Sum_probs=43.0
Q ss_pred hhhhhhhhhhhcchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 026318 101 DRGLKLEVELRASEPVRAEVVQLRAEVQ-KLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (240)
Q Consensus 101 ek~~KmEAelRa~e~lk~El~Q~r~e~q-~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (240)
+|-.+++.++...+..+.|......+.+ +|..++++-..-+.....+-.+...+ -+-.-+.|++ +.+..+|..+
T Consensus 36 ~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~--i~~~A~~ea~---~~~~~a~~~i 110 (246)
T TIGR03321 36 AREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQR--LLDEAREEAD---EIREKWQEAL 110 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH---HHHHHHHHHH
Confidence 4555666666666666666666666554 34444554444444444443322221 1223333333 3344577777
Q ss_pred hhhhhcchH
Q 026318 180 EFEKKANEE 188 (240)
Q Consensus 180 EyEKK~~~e 188 (240)
+.|++.-.+
T Consensus 111 e~E~~~a~~ 119 (246)
T TIGR03321 111 RREQAALSD 119 (246)
T ss_pred HHHHHHHHH
Confidence 777765543
No 431
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=27.83 E-value=2.8e+02 Score=26.67 Aligned_cols=61 Identities=25% Similarity=0.417 Sum_probs=30.8
Q ss_pred hhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 026318 102 RGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEA 175 (240)
Q Consensus 102 k~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~ 175 (240)
|+++||.+|---.+...|| .+.-.+|-.-++.|+.|+.+.++- |-.|..++..-|.|||++
T Consensus 237 ria~Le~eLAmQKs~seEl----------kssq~eL~dfm~eLdedVEgmqsT---iliLQq~Lketr~~Iq~l 297 (330)
T KOG2991|consen 237 RIAELEIELAMQKSQSEEL----------KSSQEELYDFMEELDEDVEGMQST---ILILQQKLKETRKEIQRL 297 (330)
T ss_pred cHHHHHHHHHHHHhhHHHH----------HHhHHHHHHHHHHHHHHHhcchhh---HHHHHHHHHHHHHHHHHH
Confidence 4556666654444444443 334445555555555555555443 444555555555555544
No 432
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=27.82 E-value=2.8e+02 Score=29.51 Aligned_cols=78 Identities=23% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhHhhHHH---HHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHH
Q 026318 48 REMHRIISENRHAIDDNTHL---QRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLR 124 (240)
Q Consensus 48 ~EiqrLl~dNqRLAathvaL---rqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r 124 (240)
+|+..|+.+|--|-.|--|| |-+|.+-=+||--=+.++..=---.-+---.|-+|+.++|.||+ -+|+|+.-+|
T Consensus 301 rEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk---~~k~ea~~ar 377 (832)
T KOG2077|consen 301 REVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELK---KAKAEAEDAR 377 (832)
T ss_pred HHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q ss_pred HHHH
Q 026318 125 AEVQ 128 (240)
Q Consensus 125 ~e~q 128 (240)
-+..
T Consensus 378 ~~~~ 381 (832)
T KOG2077|consen 378 QKAK 381 (832)
T ss_pred Hhhc
No 433
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=27.82 E-value=4e+02 Score=23.05 Aligned_cols=59 Identities=20% Similarity=0.385 Sum_probs=44.3
Q ss_pred hHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 026318 93 EAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAM 161 (240)
Q Consensus 93 e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l 161 (240)
|..|++.|+++. .+.-+|.-.|..-+.|-.-|.+|--.+..+..=+.|+..=+.||...
T Consensus 76 E~dik~AYe~A~----------~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vv 134 (159)
T PF05384_consen 76 EEDIKEAYEEAH----------ELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVV 134 (159)
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555544 45567777888888899999999999999998888888777777654
No 434
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=27.43 E-value=2.8e+02 Score=22.98 Aligned_cols=54 Identities=20% Similarity=0.204 Sum_probs=36.8
Q ss_pred hhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 87 KLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKG 143 (240)
Q Consensus 87 ~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ 143 (240)
.-++.-|++=-++=-||+.||.|.|+.+.++.+|.- -|+-|.-+-+...++...
T Consensus 18 rdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~r---rIkMLE~aLkqER~k~~~ 71 (134)
T PF08232_consen 18 RDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKR---RIKMLEYALKQERAKYKK 71 (134)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhc
Confidence 334555667777888999999999999888888743 455565555555555443
No 435
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=27.35 E-value=5.9e+02 Score=24.85 Aligned_cols=102 Identities=15% Similarity=0.187 Sum_probs=54.1
Q ss_pred HHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHH
Q 026318 49 EMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQ 128 (240)
Q Consensus 49 EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q 128 (240)
|+...-.+-..|++---.|...+.+.+.|++-+.+-.-+.+.|..-+-.+|+.- .+..|.|-+++|.|++
T Consensus 38 dLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqdLaa~----------i~etkeeNlkLrTd~e 107 (389)
T KOG4687|consen 38 DLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFGTERQDLAAD----------IEETKEENLKLRTDRE 107 (389)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHHHHH----------HHHHHHHhHhhhHHHH
Confidence 333333444445555555555555555555555444444443332222222211 1345666667777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 026318 129 KLNSSRQELTTQIKGLTKDVNRLEAENKQLIA 160 (240)
Q Consensus 129 ~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~ 160 (240)
.|--..-+|-+....+.+-.+...++.+-.|.
T Consensus 108 aL~dq~adLhgD~elfReTeAq~ese~~a~as 139 (389)
T KOG4687|consen 108 ALLDQKADLHGDCELFRETEAQFESEKMAGAS 139 (389)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHhcccc
Confidence 66666666666666666666666666666554
No 436
>KOG1510 consensus RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7 [Transcription]
Probab=27.35 E-value=2.2e+02 Score=24.62 Aligned_cols=74 Identities=23% Similarity=0.342 Sum_probs=50.2
Q ss_pred HHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 70 ELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (240)
Q Consensus 70 eL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~ 149 (240)
.|+-+-..+..|-..++....=-+.|.+. +.|++ .|..-+--|.+++...-..|-.+||.+-.++.
T Consensus 64 ~i~~~akqId~LIdsLP~~~~~~e~Ql~~----i~kLq----------~en~e~~~el~~~v~~~e~Ll~~vq~~le~~a 129 (139)
T KOG1510|consen 64 DIAKKAKQIDTLIDSLPGEEGSAEAQLEK----IKKLQ----------EENEEVALELEELVSKGEKLLEQVQSLLEDIA 129 (139)
T ss_pred HHHHHHHHHHHHHHhCCCcccCHHHHHHH----HHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555666656666666555666554 44555 34444556777888888889999999999999
Q ss_pred HHHHhhhh
Q 026318 150 RLEAENKQ 157 (240)
Q Consensus 150 r~~~d~qq 157 (240)
+.+.+.++
T Consensus 130 ~~~l~~k~ 137 (139)
T KOG1510|consen 130 DLQLNSKK 137 (139)
T ss_pred HHHHhccC
Confidence 88877664
No 437
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=27.31 E-value=4.9e+02 Score=23.88 Aligned_cols=20 Identities=20% Similarity=0.112 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 026318 160 AMRADIDGIRSELVEARRAF 179 (240)
Q Consensus 160 ~l~aEid~lrqElqr~Raa~ 179 (240)
...+.+...+.++..++..+
T Consensus 187 ~~~a~~~~~~a~l~~a~~~l 206 (346)
T PRK10476 187 ALVAQRAAREAALAIAELHL 206 (346)
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444333
No 438
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=27.30 E-value=49 Score=34.42 Aligned_cols=12 Identities=17% Similarity=0.030 Sum_probs=5.6
Q ss_pred CCCCCCCCCCcc
Q 026318 26 TRGLAPMHFHPM 37 (240)
Q Consensus 26 ~r~~~~~~p~p~ 37 (240)
|-++.|+||+|.
T Consensus 254 P~G~~PPPPP~~ 265 (817)
T KOG1925|consen 254 PKGPFPPPPPLA 265 (817)
T ss_pred CCCCCCCCCCCc
Confidence 344445555543
No 439
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=27.24 E-value=2.2e+02 Score=23.91 Aligned_cols=53 Identities=26% Similarity=0.376 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcch
Q 026318 133 SRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANE 187 (240)
Q Consensus 133 ~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~ 187 (240)
..++|..++..+..||+.+.-+.+++-.-.+-.+. +-+..+|.-|+.||....
T Consensus 21 l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~--~~~~~i~~q~~~e~~~r~ 73 (131)
T PF11068_consen 21 LLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNA--QQIQSIQQQFEQEKQERL 73 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch--hhHHHHHHHHHHHHHHHH
Confidence 44566666666666666666555554322110000 344455555665554433
No 440
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=27.22 E-value=3.2e+02 Score=21.68 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR 150 (240)
Q Consensus 116 lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r 150 (240)
|..++.++.+.+..+...=+.+.+.++....|=+|
T Consensus 29 Lss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~R 63 (85)
T PRK09973 29 LASNVQTLNAKIARLEQDMKALRPQIYAAKSEANR 63 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 441
>PF13166 AAA_13: AAA domain
Probab=27.14 E-value=6.6e+02 Score=25.31 Aligned_cols=96 Identities=19% Similarity=0.288 Sum_probs=52.2
Q ss_pred hhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hHH
Q 026318 83 QIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ--LIA 160 (240)
Q Consensus 83 ~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qq--ip~ 160 (240)
..+..+...=+.-...|..|....-..+- .+++...+..+...++.+.+...+.-..+..+.+++..+...... +-.
T Consensus 329 ~~~~~l~~~l~~l~~~L~~K~~~~~~~~~-~~~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~ 407 (712)
T PF13166_consen 329 SAIEALKEELEELKKALEKKIKNPSSPIE-LEEINEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLHLIAK 407 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444433333222 245555666777777777777777777777777777766655433 344
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 026318 161 MRADIDGIRSELVEARRAF 179 (240)
Q Consensus 161 l~aEid~lrqElqr~Raa~ 179 (240)
+...++.+..++......+
T Consensus 408 ~~~~i~~~~~~~~~~~~~i 426 (712)
T PF13166_consen 408 LKEDIEEYQKEIKELEKEI 426 (712)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555444333
No 442
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=27.10 E-value=1.8e+02 Score=23.03 Aligned_cols=57 Identities=25% Similarity=0.437 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-hhhcchHH--HHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 026318 161 MRADIDGIRSELVEARRAFEF-EKKANEEQ--IEQKQAMENNLISMAREIEKLRAELLNT 217 (240)
Q Consensus 161 l~aEid~lrqElqr~Raa~Ey-EKK~~~e~--~Eq~qaMEknlisMarEvEKLRaElana 217 (240)
+-.|||++-..+..+|--+|- |++.+-.. -|.++.+|+.+-++..=+++.-.+|..-
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~L 62 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLL 62 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 446888888888888877763 55544443 3678888888777776555555555443
No 443
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=26.98 E-value=1.8e+02 Score=26.57 Aligned_cols=83 Identities=17% Similarity=0.258 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHhhhhhHHHHHHH--------------
Q 026318 115 PVRAEVVQLRAEVQKLNSSRQELTTQ---------------IKGLTKDVNRLEAENKQLIAMRADI-------------- 165 (240)
Q Consensus 115 ~lk~El~Q~r~e~q~L~a~RQELt~q---------------vq~ltqeL~r~~~d~qqip~l~aEi-------------- 165 (240)
.+|.||.++..||..| ||=|+++ ...|+|++.|..-|+|--.+-..=-
T Consensus 48 elr~EL~kvEeEI~TL---rqVLaAKerH~~ELKRKLGlt~~~EL~qnisksw~d~q~st~y~kt~~~~g~~~~~vy~~~ 124 (208)
T KOG4010|consen 48 ELRTELAKVEEEIVTL---RQVLAAKERHAAELKRKLGLTVLKELKQNISKSWKDVQASTAYVKTSQSVGTFTKTVYEAP 124 (208)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHhhhhhHHHHHHhhhhhccccceeeecc
Confidence 5677777777766544 3434333 4678899999888888766655411
Q ss_pred ---HHHHHHHHHHHHhhhh------hhhcchHHHHHHHHHHHhH
Q 026318 166 ---DGIRSELVEARRAFEF------EKKANEEQIEQKQAMENNL 200 (240)
Q Consensus 166 ---d~lrqElqr~Raa~Ey------EKK~~~e~~Eq~qaMEknl 200 (240)
+.|-|-.|..=++|-- +|=+.+.|.+-.+..|-.+
T Consensus 125 ~tqetlSqagQKtsaa~ssvgs~Is~Kl~dmkNS~tfkSfE~~v 168 (208)
T KOG4010|consen 125 LTQETLSQAGQKTSAAFSSVGSAISRKLGDMKNSATFKSFEEKV 168 (208)
T ss_pred cchhhHHhhhHHHHHHHHHHhHHHHHHHhcccccHHHHHHHHHH
Confidence 4455777777777653 4445555555555555543
No 444
>TIGR01805 CM_mono_grmpos monofunctional chorismate mutase, gram positive-type, clade 2. This model represents a clade of chorismate mutase proteins/domains from gram positive species. The sequence from Enterococcus is fused to the C-terminus of an aparrent acetyltransferase, and the seuence from Clostridium acetobutylicum (but not perfringens) is fused to the N-terminus of shikimate-5-dehydrogenase, another enzyme of the chorismate pathway. All the other members of this clade are mono-functional. Members of this clade from Streptococcus and Lactococcus have been found which represent the sole chorismate mutase domain in their respective genomes which also exhibit evidence of the enzymes of both the upstream and downstream branches of the chorismate pathways.
Probab=26.76 E-value=2.1e+02 Score=21.30 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (240)
Q Consensus 114 e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqe 147 (240)
+.+|.++.++-.++-.|.+.|-.++.+|-.+.+.
T Consensus 2 ~~lR~~Id~iD~~i~~Ll~~R~~~~~~i~~~K~~ 35 (81)
T TIGR01805 2 ELIRKKIDEIDDKLVVLFEERMEVVKEIAAYKKK 35 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999998766655
No 445
>PRK09343 prefoldin subunit beta; Provisional
Probab=26.72 E-value=3.5e+02 Score=21.93 Aligned_cols=90 Identities=14% Similarity=0.315 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhh----hHH-HHHHHHHHHHHHHHHHHhhhhhhhcchHH
Q 026318 118 AEVVQLRAEVQKLNSSRQELTTQIKG---LTKDVNRLEAENKQ----LIA-MRADIDGIRSELVEARRAFEFEKKANEEQ 189 (240)
Q Consensus 118 ~El~Q~r~e~q~L~a~RQELt~qvq~---ltqeL~r~~~d~qq----ip~-l~aEid~lrqElqr~Raa~EyEKK~~~e~ 189 (240)
.++++++.+++.+...|+-|.++... ...||..+..|..= -|. ++...+.+..++..---.|+
T Consensus 14 ~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie--------- 84 (121)
T PRK09343 14 AQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLE--------- 84 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHH---------
Confidence 44555555555555555555554443 33444444433211 011 23444444444432222222
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 026318 190 IEQKQAMENNLISMAREIEKLRAELLNT 217 (240)
Q Consensus 190 ~Eq~qaMEknlisMarEvEKLRaElana 217 (240)
...+.+||+.-.+-..+++++..|-.+
T Consensus 85 -~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 85 -LRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777766666543
No 446
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=26.68 E-value=1.1e+03 Score=27.62 Aligned_cols=67 Identities=21% Similarity=0.297 Sum_probs=44.1
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 026318 110 LRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (240)
Q Consensus 110 lRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (240)
+..+.+.+.-..|++.++.+|...-++-...++.|.-+. -...+++-...+||.+|-.++......|
T Consensus 1681 ~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y---~~~~~~L~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1681 MEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEY---LRNEQALEDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334455566667777777777666555554444443221 2456778888899999999988777665
No 447
>TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2. This model represents one of two separate clades of the chorismate mutase domain of the gamma and beta and epsilon proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain. It is also found in Aquifex aolicus.
Probab=26.64 E-value=2e+02 Score=21.14 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (240)
Q Consensus 114 e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqe 147 (240)
+.+|.++.++-.++=.|-+.|..++.+|..+.++
T Consensus 2 ~~lR~~ID~iD~~iv~Ll~~R~~~~~~i~~~K~~ 35 (76)
T TIGR01807 2 EELRNKIDAIDDRILDLLSERATYAQAVGELKGS 35 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999988666554
No 448
>COG5293 Predicted ATPase [General function prediction only]
Probab=26.64 E-value=7.5e+02 Score=25.76 Aligned_cols=106 Identities=18% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHH
Q 026318 99 LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSR------QELTTQIKGLTKDVNRLE---AENKQLIAMRADIDGIR 169 (240)
Q Consensus 99 l~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~R------QELt~qvq~ltqeL~r~~---~d~qqip~l~aEid~lr 169 (240)
|=+++.++++||..+++-+.++-.-|++--..-..| |-|....-.+.-+|+-.. ++..+..++..=|..++
T Consensus 340 l~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ee~~~~~~elae~~~rie~l~k~~~~~~~i~~lk 419 (591)
T COG5293 340 LQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGELAELEYRIEPLRKLHALDQYIGTLK 419 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHH
Q 026318 170 SELVEARRAFEFEKKANEEQIEQKQAMENNLISMA 204 (240)
Q Consensus 170 qElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMa 204 (240)
+|+-+.-..+=-|-.-+...++.....=+||+...
T Consensus 420 he~l~~~~r~y~e~q~q~~~~~~~~~lF~~~~r~~ 454 (591)
T COG5293 420 HECLDLEERIYTEVQQQCSLFASIGRLFKEMIREV 454 (591)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
No 449
>PHA03332 membrane glycoprotein; Provisional
Probab=26.58 E-value=1e+03 Score=27.28 Aligned_cols=61 Identities=23% Similarity=0.353 Sum_probs=33.2
Q ss_pred HHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHH
Q 026318 67 LQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSS 133 (240)
Q Consensus 67 LrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~ 133 (240)
+-.-+.-.++=+..+...|.++-++-+..|++.--|+-+||.+ +..-+.++..-+.+|...
T Consensus 903 tNaAV~~lsDai~klGnti~kisatl~~nI~avNgRIs~Led~------VN~r~~~v~~~intLA~q 963 (1328)
T PHA03332 903 LNARVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQ------VNLRFLAVATNFNTLATQ 963 (1328)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 3333333344444455555666666666666666666666643 344556666655555444
No 450
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=26.53 E-value=4.4e+02 Score=23.06 Aligned_cols=10 Identities=30% Similarity=0.677 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 026318 163 ADIDGIRSEL 172 (240)
Q Consensus 163 aEid~lrqEl 172 (240)
+.++.++.++
T Consensus 116 ~~l~~~~~~l 125 (322)
T TIGR01730 116 ADLEAAKASL 125 (322)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 451
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=26.40 E-value=61 Score=35.11 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=7.7
Q ss_pred CCCCCCCCCCCCCCCc
Q 026318 21 PRPVLTRGLAPMHFHP 36 (240)
Q Consensus 21 p~p~~~r~~~~~~p~p 36 (240)
|||+.++|+||+|++|
T Consensus 1033 ~pP~~g~P~PpPp~~~ 1048 (1106)
T KOG0162|consen 1033 PPPPAGRPKPPPPAKP 1048 (1106)
T ss_pred CCCCCCCCCccCCCCC
Confidence 4555555544444444
No 452
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=26.40 E-value=8e+02 Score=26.02 Aligned_cols=96 Identities=17% Similarity=0.210 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHH
Q 026318 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEA-----ENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQ 192 (240)
Q Consensus 118 ~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~-----d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq 192 (240)
.||.-+..-|-.|....-.|..|.+..+.+....++ -...+.-+..+|-.|--+++|.+++.-.| ...+..|
T Consensus 242 ~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e---~e~~~~q 318 (629)
T KOG0963|consen 242 TELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEE---REKHKAQ 318 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 333333333444444444444444444444333311 12223334455666666666666665433 2345678
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhh
Q 026318 193 KQAMENNLISMAREIEKLRAELLN 216 (240)
Q Consensus 193 ~qaMEknlisMarEvEKLRaElan 216 (240)
.++.|+-+-+--.++|+|+..|.+
T Consensus 319 I~~le~~l~~~~~~leel~~kL~~ 342 (629)
T KOG0963|consen 319 ISALEKELKAKISELEELKEKLNS 342 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888888888888888887765
No 453
>PRK14154 heat shock protein GrpE; Provisional
Probab=26.20 E-value=3.7e+02 Score=24.31 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=39.4
Q ss_pred CCCCCCCccchHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHH
Q 026318 29 LAPMHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHR 80 (240)
Q Consensus 29 ~~~~~p~p~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~ 80 (240)
.|.-.|.+..|+++|+.-..++..|-....|+.|+---+|+-...-..+++.
T Consensus 47 ~~~~~~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~ 98 (208)
T PRK14154 47 EGLEFPSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIK 98 (208)
T ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567778999999999999999888889888888888766555544443
No 454
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=26.10 E-value=3.2e+02 Score=21.29 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 026318 123 LRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLI 159 (240)
Q Consensus 123 ~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip 159 (240)
+..+|..|...-+.|...|.....|-.++.++|+-+-
T Consensus 21 Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq 57 (80)
T PF10224_consen 21 LIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQ 57 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346666666777777777777777666666666543
No 455
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=26.10 E-value=7.7e+02 Score=26.19 Aligned_cols=85 Identities=20% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcc-----------hhhH-HHHHHHHHHHHHHHHHH
Q 026318 67 LQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRAS-----------EPVR-AEVVQLRAEVQKLNSSR 134 (240)
Q Consensus 67 LrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~-----------e~lk-~El~Q~r~e~q~L~a~R 134 (240)
|++.|....--|..| ...+.|+=.++.+++..+.++=.+|... ..+- .+|.+.|..++.|...+
T Consensus 101 Lke~l~~l~~~le~l----r~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek 176 (660)
T KOG4302|consen 101 LKEQLESLKPYLEGL----RKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEK 176 (660)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 026318 135 QELTTQIKGLTKDVNRLEAEN 155 (240)
Q Consensus 135 QELt~qvq~ltqeL~r~~~d~ 155 (240)
-.=-.+|..+-.++...++.+
T Consensus 177 ~~Rlekv~~~~~~I~~l~~~L 197 (660)
T KOG4302|consen 177 SDRLEKVLELKEEIKSLCSVL 197 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
No 456
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=26.08 E-value=8.7e+02 Score=26.34 Aligned_cols=134 Identities=18% Similarity=0.307 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhhhhhhHhhHH---HHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHH
Q 026318 45 IQRREMHRIISENRHAIDDNTH---LQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVV 121 (240)
Q Consensus 45 ~Q~~EiqrLl~dNqRLAathva---LrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~ 121 (240)
.+-.|+...|++|+.|.+.--. .-.+|.++.+||--+-++-..=--|=+.++-.....-... ...++.+|.||-
T Consensus 405 ~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~y---skQVeeLKtELE 481 (786)
T PF05483_consen 405 VELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHY---SKQVEELKTELE 481 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHH
Confidence 5567788889999988765433 3456666666666554433322223333333333322211 233456666666
Q ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHHhhhh
Q 026318 122 QLR-------AEVQKLNSSRQELTTQIKGLTKDVNRLEAENK----QLIAMRADIDGIRSELVEARRAFEF 181 (240)
Q Consensus 122 Q~r-------~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~q----qip~l~aEid~lrqElqr~Raa~Ey 181 (240)
+-. +-+.+|......|.-+...+.-+|.+.+.|.. |---+..+|+.|-.+-.++|.-++|
T Consensus 482 ~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles 552 (786)
T PF05483_consen 482 QEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELES 552 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 532 33344444444444555555555555544321 2222333444444444444444444
No 457
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=25.92 E-value=8e+02 Score=25.87 Aligned_cols=56 Identities=20% Similarity=0.330 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHH---HHHHHHHHHHh
Q 026318 160 AMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMA---REIEKLRAELL 215 (240)
Q Consensus 160 ~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMa---rEvEKLRaEla 215 (240)
.+++++..+..+.......|+--.+.+..+..+....+.||+--- .+--||+.++.
T Consensus 252 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~ 310 (670)
T KOG0239|consen 252 ELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEIL 310 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555555555555566666777777777777655 33335555543
No 458
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=25.74 E-value=4e+02 Score=22.36 Aligned_cols=87 Identities=21% Similarity=0.124 Sum_probs=52.2
Q ss_pred HHhhhhhhhhhhhcchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 026318 99 LFDRGLKLEVELRASEPVRAEVVQLRAEVQ-KLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR 177 (240)
Q Consensus 99 l~ek~~KmEAelRa~e~lk~El~Q~r~e~q-~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra 177 (240)
|-+|-.++..++...+..+.+......+.+ +|..+|++-..-+.....+-.+...+. +-..+.|++ +.+..++.
T Consensus 48 l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~--~~~A~~e~~---~~~~~a~~ 122 (174)
T PRK07352 48 LEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEI--EKQAIEDMA---RLKQTAAA 122 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH---HHHHHHHH
Confidence 335556667777777777777777766664 456666666666666655544443322 233344443 45667888
Q ss_pred hhhhhhhcchHHH
Q 026318 178 AFEFEKKANEEQI 190 (240)
Q Consensus 178 a~EyEKK~~~e~~ 190 (240)
.++.|++.-...+
T Consensus 123 ~i~~e~~~a~~~l 135 (174)
T PRK07352 123 DLSAEQERVIAQL 135 (174)
T ss_pred HHHHHHHHHHHHH
Confidence 8888876554443
No 459
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=25.71 E-value=1.8e+02 Score=23.23 Aligned_cols=31 Identities=10% Similarity=0.280 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhhHHHHH
Q 026318 39 LEEEIEIQRREMHRIISENRHAIDDNTHLQR 69 (240)
Q Consensus 39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrq 69 (240)
+..+++.++.|+..|-.+|+.|......|+.
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4555555555555555555555555554444
No 460
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=25.65 E-value=3.6e+02 Score=21.75 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHH
Q 026318 157 QLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMEN 198 (240)
Q Consensus 157 qip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEk 198 (240)
.|..|..-|....+.+..++..++--+..-.+-.-..++|||
T Consensus 72 fi~~L~~~I~~q~~~v~~~~~~ve~~r~~~~~a~~~~k~lEk 113 (147)
T PRK05689 72 FLQQLEKAITQQRQQLTQWTQKVDNARKYWQEKKQRLEALET 113 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666777777777777777777666666666666666665
No 461
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=25.45 E-value=2.9e+02 Score=20.59 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (240)
Q Consensus 114 e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~ 149 (240)
+.+..+...+..++.+|......+..++..+...|.
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666677777766666666666665554
No 462
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=25.43 E-value=3.7e+02 Score=21.77 Aligned_cols=92 Identities=15% Similarity=0.115 Sum_probs=42.3
Q ss_pred hhhHhHHHHHhhhhhhhhhhhcch--hhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 026318 91 DKEAHTRELFDRGLKLEVELRASE--PVRAEVVQLRAEVQKLNSSR----QELTTQIKGLTKDVNRLEAENKQLIAMRAD 164 (240)
Q Consensus 91 e~e~q~Rel~ek~~KmEAelRa~e--~lk~El~Q~r~e~q~L~a~R----QELt~qvq~ltqeL~r~~~d~qqip~l~aE 164 (240)
-.|-.+..++.+..++=.-.-+.. .+-.+....+-++...-+.. ..+..-+..-..|..+......+ +..+
T Consensus 13 ~~dr~l~~l~k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~---i~~~ 89 (139)
T PF05615_consen 13 GDDRPLKRLLKRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEE---IEQE 89 (139)
T ss_pred cCchhHHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 345666677777777644333320 00123333333332222222 22222233333344444444433 3456
Q ss_pred HHHHHHHHHHHHHhhhhhhhc
Q 026318 165 IDGIRSELVEARRAFEFEKKA 185 (240)
Q Consensus 165 id~lrqElqr~Raa~EyEKK~ 185 (240)
|+.++.++..++..++..|..
T Consensus 90 i~~~k~~ie~lk~~L~~ak~~ 110 (139)
T PF05615_consen 90 IEQAKKEIEELKEELEEAKRV 110 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666677766666666666543
No 463
>COG3923 PriC Primosomal replication protein N'' [DNA replication, recombination, and repair]
Probab=25.01 E-value=3.4e+02 Score=24.29 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhhh----------hhHhhHHHHHHHHhhHHHHHHHhhhhhhh
Q 026318 45 IQRREMHRIISENRH----------AIDDNTHLQRELTASKDEIHRLGQIIPKL 88 (240)
Q Consensus 45 ~Q~~EiqrLl~dNqR----------LAathvaLrqeL~aaq~El~~l~~~i~~i 88 (240)
+||.+..+.+.+|-+ ....-..|.|+|.+.++=+-+-.+++-+|
T Consensus 113 ~qhqd~Errl~~m~~~r~l~l~q~s~~vEqq~lqqel~~~e~RlarCr~Aleki 166 (175)
T COG3923 113 AQHQDYERRLLAMVQDRRLQLAQQSDLVEQQKLQQELEAYEQRLARCRHALEKI 166 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777644 34555668888888887777776666554
No 464
>PRK11546 zraP zinc resistance protein; Provisional
Probab=24.76 E-value=2.3e+02 Score=24.34 Aligned_cols=50 Identities=14% Similarity=0.209 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---HHHHHH-HHHHHHHHHHHHHh
Q 026318 129 KLNSSRQELTTQIKGLTKDVNRLEAENKQL---IAMRAD-IDGIRSELVEARRA 178 (240)
Q Consensus 129 ~L~a~RQELt~qvq~ltqeL~r~~~d~qqi---p~l~aE-id~lrqElqr~Raa 178 (240)
++...+++-.++...|.++|--.+.|.+.+ |.-..+ |..|.+|+..+|..
T Consensus 51 ~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~k 104 (143)
T PRK11546 51 AWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQS 104 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666555554433 222223 77777777777763
No 465
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=24.75 E-value=8.2e+02 Score=25.61 Aligned_cols=65 Identities=22% Similarity=0.265 Sum_probs=48.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 026318 152 EAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLN 216 (240)
Q Consensus 152 ~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaElan 216 (240)
-+|++.+-....+|+.+.+=++-.=.-++-.+.+|....+-.+..++-|-++-.+.+|.+..|..
T Consensus 343 e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~ 407 (570)
T COG4477 343 ETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTS 407 (570)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34556666667777777777777777788888888888887777777777777777777766543
No 466
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=24.69 E-value=4e+02 Score=22.09 Aligned_cols=47 Identities=26% Similarity=0.292 Sum_probs=30.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 026318 153 AENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAE 213 (240)
Q Consensus 153 ~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaE 213 (240)
++..+|-.|++|++.....+.+ -+++.+.||+|.-...+|++++...
T Consensus 38 ~~~~~l~lLq~e~~~~e~~le~--------------d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 38 ANLHQLELLQEEIEKEEAALER--------------DYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444555555555554444332 4678889999998888888877665
No 467
>PLN03188 kinesin-12 family protein; Provisional
Probab=24.68 E-value=1.1e+03 Score=27.16 Aligned_cols=93 Identities=19% Similarity=0.248 Sum_probs=41.2
Q ss_pred HhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 026318 81 LGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIA 160 (240)
Q Consensus 81 l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~ 160 (240)
.+++|+..+.+|=+.+..|+|..+-- -|-|-.|+.-+.-+ .+|....-|=--.|-...=||.|.+.++...-.
T Consensus 909 ~~~~~~~~~~~ki~~l~~~~dg~l~~------~~~~~~~~~~~~~~-~~~~~~~y~~~p~~~~~~~e~~~~~~e~~~~~~ 981 (1320)
T PLN03188 909 CNAIIGQTREDKIIRLESLMDGVLSK------EDFLEEELASLMHE-HKLLKEKYENHPEVLRTKIELKRVQDELEHYRN 981 (1320)
T ss_pred hhHHHhhhhhhhHHHHhhhcccccch------hhhhhhhhhhhhhh-HHHHHHHhhcChhhhhhhHHHHHHHHHHHHHHh
Confidence 35677776666555555555544221 13344444433222 222222222111222222244444444432211
Q ss_pred HH--HHHHHHHHHHHHHHHhhh
Q 026318 161 MR--ADIDGIRSELVEARRAFE 180 (240)
Q Consensus 161 l~--aEid~lrqElqr~Raa~E 180 (240)
-. .|-|-|..|||.+|+-+.
T Consensus 982 ~~d~~ErEvll~eI~dlr~qL~ 1003 (1320)
T PLN03188 982 FYDMGEREVLLEEIQDLRSQLQ 1003 (1320)
T ss_pred hccchhHHHHHHHHHHHHHHHH
Confidence 11 466777777777777333
No 468
>PF02731 SKIP_SNW: SKIP/SNW domain; InterPro: IPR004015 SKIP (SKI-interacting protein) is an essential spliceosomal component and transcriptional coregulator, which may provide regulatory coupling of transcription initiation and splicing []. SKIP was identified in a yeast 2-hybrid screen, where it was shown to interact with both the cellular and viral forms of SKI through the highly conserved region on SKIP known as the SNW domain []. SKIP is now known to interact with a number of other proteins as well. SKIP potentiates the activity of important transcription factors, such as vitamin D receptor, CBF1 (RBP-Jkappa), Smad2/3, and MyoD. It works with Ski in overcoming pRb-mediated cell cycle arrest, and it is targeted by the viral transactivators EBNA2 and E7 []. This entry represents the SNW domain.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=24.67 E-value=4.3e+02 Score=23.12 Aligned_cols=11 Identities=18% Similarity=0.429 Sum_probs=6.5
Q ss_pred hHHHHHHHHHH
Q 026318 39 LEEEIEIQRRE 49 (240)
Q Consensus 39 LEe~La~Q~~E 49 (240)
|+.||++....
T Consensus 87 LDKRlaadgr~ 97 (158)
T PF02731_consen 87 LDKRLAADGRG 97 (158)
T ss_pred HHHHHhhcccc
Confidence 67777654433
No 469
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion]
Probab=24.63 E-value=5.9e+02 Score=23.94 Aligned_cols=81 Identities=11% Similarity=0.190 Sum_probs=64.6
Q ss_pred HhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHH
Q 026318 100 FDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEA---ENKQLIAMRADIDGIRSELVEAR 176 (240)
Q Consensus 100 ~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~---d~qqip~l~aEid~lrqElqr~R 176 (240)
+-.+.+|..+++..+.+..=+.-+.+=+|.=...-++.+.-+|.+..-+-.+.. .-..--++..||+.|..|+.+.=
T Consensus 46 ~~is~~l~~~~~~L~q~~~n~~~g~s~lqtae~aL~~~~~~lqrirelavqaan~t~s~~dr~~iq~Ei~~l~~el~~ia 125 (360)
T COG1344 46 LAIALRLRSQIRGLSQAKDNAQDGISKLQTAEGALSEISKILQRIKELAVQAANGTLSDADRAAIQKEIEQLLDELDNIA 125 (360)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999998888888888888888888888888888888877777662 34556788999999999999875
Q ss_pred Hhhh
Q 026318 177 RAFE 180 (240)
Q Consensus 177 aa~E 180 (240)
.+-+
T Consensus 126 ntt~ 129 (360)
T COG1344 126 NTTS 129 (360)
T ss_pred hccc
Confidence 5443
No 470
>PRK09343 prefoldin subunit beta; Provisional
Probab=24.61 E-value=3.8e+02 Score=21.69 Aligned_cols=75 Identities=19% Similarity=0.279 Sum_probs=38.4
Q ss_pred HHHhhhhhhhhhhhcchhhHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 026318 98 ELFDRGLKLEVELRASEPVRAEVVQLRAEV------------QKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADI 165 (240)
Q Consensus 98 el~ek~~KmEAelRa~e~lk~El~Q~r~e~------------q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEi 165 (240)
.+......+|++++-.+.+..||..+-.|. +....++++|..++..+..++.+. -++.-.+...+
T Consensus 25 ~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~l---ekq~~~l~~~l 101 (121)
T PRK09343 25 RLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTL---EKQEKKLREKL 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 344555566666666666666666655442 233445555555555555433322 23344455555
Q ss_pred HHHHHHHHHH
Q 026318 166 DGIRSELVEA 175 (240)
Q Consensus 166 d~lrqElqr~ 175 (240)
..++..++.+
T Consensus 102 ~e~q~~l~~l 111 (121)
T PRK09343 102 KELQAKINEM 111 (121)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 471
>PRK13824 replication initiation protein RepC; Provisional
Probab=24.59 E-value=4.8e+02 Score=25.62 Aligned_cols=78 Identities=18% Similarity=0.293 Sum_probs=47.7
Q ss_pred hHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 026318 95 HTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQE---------LTTQIKGLTKDVNRLEAENKQLIAMRADI 165 (240)
Q Consensus 95 q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQE---------Lt~qvq~ltqeL~r~~~d~qqip~l~aEi 165 (240)
...||.+-+.+..+|-+....+|.++.-+|-||.+|...=.+ +...++.+..-|-|- .....+-.+.+++
T Consensus 147 R~~El~~~A~~~~ae~~~~r~lr~~it~~rRdi~~li~~a~~~~~~~~w~~~~~~~~~i~~~l~R~-~~~~~l~~l~~~l 225 (404)
T PRK13824 147 RAEEFEALAEQVAAERKALRRLRERLTLCRRDIAKLIEAAIEEGVPGDWEGVEQRFRAIVARLPRR-ATLAELEPILDEL 225 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHH
Confidence 345667777778888888888899999999999888865332 222222222222222 2344455666666
Q ss_pred HHHHHHHH
Q 026318 166 DGIRSELV 173 (240)
Q Consensus 166 d~lrqElq 173 (240)
..++.++.
T Consensus 226 ~~l~~~~~ 233 (404)
T PRK13824 226 EALREEVV 233 (404)
T ss_pred HHHHHHHH
Confidence 66665553
No 472
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=24.30 E-value=3.6e+02 Score=21.24 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=8.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHH
Q 026318 192 QKQAMENNLISMAREIEKLRA 212 (240)
Q Consensus 192 q~qaMEknlisMarEvEKLRa 212 (240)
+.+.+++++-....++..+..
T Consensus 101 ~~~~l~~~l~~l~~~~~~i~~ 121 (126)
T TIGR00293 101 AIEKLQEALAELASRAQQLEQ 121 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333
No 473
>PRK09752 adhesin; Provisional
Probab=24.24 E-value=70 Score=35.90 Aligned_cols=6 Identities=17% Similarity=0.578 Sum_probs=2.5
Q ss_pred chhhhh
Q 026318 228 SFFLGA 233 (240)
Q Consensus 228 g~~~~~ 233 (240)
||.+|+
T Consensus 1060 GYSvGl 1065 (1250)
T PRK09752 1060 GYAVGL 1065 (1250)
T ss_pred cEeeee
Confidence 444443
No 474
>KOG2815 consensus Mitochondrial/choloroplast ribosomal protein S15 [Translation, ribosomal structure and biogenesis]
Probab=24.11 E-value=1.9e+02 Score=27.15 Aligned_cols=93 Identities=23% Similarity=0.322 Sum_probs=68.5
Q ss_pred hHHHHHhhhhhhhhhhhcchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 026318 95 HTRELFDRGLKLEVELRASEPVRAEVVQLRAE-VQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELV 173 (240)
Q Consensus 95 q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e-~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElq 173 (240)
-=|+.++++.++. .+-+.|.++..|..++-+ -+.....+--...|++..|-+..++..--.-=-.+.+...++++++|
T Consensus 144 ~kr~~~lril~~~-n~ss~e~~k~~lk~~~~e~~~~~e~dtgs~~vQ~~~~t~~i~~~~r~~~~Hkkd~~~~~~l~~~~q 222 (256)
T KOG2815|consen 144 DKREKILRILRRR-NLSSFEKIKIKLKLVRKEPFQRFESDTGSAEVQAAFPTVEIRKLSRHEELHKKDQASVRGLRQEVQ 222 (256)
T ss_pred cHHHHHHHHhhhh-ccccHHHHHHHHHHhccCCcccccccccchhHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777776 445678889999998888 66666666666777777776666666533333456788889999999
Q ss_pred HHHHhhhhhhhcchH
Q 026318 174 EARRAFEFEKKANEE 188 (240)
Q Consensus 174 r~Raa~EyEKK~~~e 188 (240)
.-|.++-|..+.+-+
T Consensus 223 kR~r~Lkyl~~~~~~ 237 (256)
T KOG2815|consen 223 KRQRALKYLARANRQ 237 (256)
T ss_pred HHHHHHHHHHHhCCc
Confidence 999999999887654
No 475
>PRK06285 chorismate mutase; Provisional
Probab=24.10 E-value=3.4e+02 Score=20.94 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=28.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (240)
Q Consensus 113 ~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqe 147 (240)
.+.+|.++.++-.++-+|.+.|..++.+|-.+.++
T Consensus 9 L~elR~~ID~ID~~iv~Ll~~R~~l~~~I~~~K~~ 43 (96)
T PRK06285 9 LNEIRKRIDEIDEQIIDLIAERTSLAKEIAELKKS 43 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688888888888888889998888888666655
No 476
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=24.05 E-value=3.1e+02 Score=20.48 Aligned_cols=50 Identities=14% Similarity=0.182 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 026318 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRAD 164 (240)
Q Consensus 115 ~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aE 164 (240)
.+..++...-.|+..+...=.+++..|+.-.+.+...-...+.++.--.+
T Consensus 37 ~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~ 86 (90)
T PF06103_consen 37 TLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSE 86 (90)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555555555555555555555544433
No 477
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=23.94 E-value=6.2e+02 Score=24.26 Aligned_cols=85 Identities=14% Similarity=0.234 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHH
Q 026318 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQ 194 (240)
Q Consensus 115 ~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~q 194 (240)
+++.++.|++++..+. .+++.....+++|.+.-.++--.-+.++|..+..++.+++.++
T Consensus 122 ~~~~~l~qaqa~l~~a-------~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~~a~a~l~-------------- 180 (415)
T PRK11556 122 PFKVALAQAQGQLAKD-------QATLANARRDLARYQQLAKTNLVSRQELDAQQALVSETEGTIK-------------- 180 (415)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHH--------------
Confidence 4566677776654332 2345556666666665444444445666665555444433322
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhhcccccccccc
Q 026318 195 AMENNLISMAREIEKLRAELLNTERRACGLGKI 227 (240)
Q Consensus 195 aMEknlisMarEvEKLRaElanaekRa~~~~~~ 227 (240)
+--.++++++..|.+..-+|--.|.+
T Consensus 181 -------~a~a~l~~a~~~L~~~~I~AP~~G~V 206 (415)
T PRK11556 181 -------ADEASVASAQLQLDYSRITAPISGRV 206 (415)
T ss_pred -------HHHHHHHHHHHhhhCCEEECCCCeEE
Confidence 22235566667776666665444443
No 478
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=23.67 E-value=3.2e+02 Score=20.56 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 026318 158 LIAMRADIDGIRSELVEARR 177 (240)
Q Consensus 158 ip~l~aEid~lrqElqr~Ra 177 (240)
...|.-++..+=+++|.+..
T Consensus 91 ~~~L~~~f~~~m~~fq~~Q~ 110 (117)
T smart00503 91 TEKLRKKFKEVMNEFQRLQR 110 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 479
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=23.64 E-value=9.5e+02 Score=25.95 Aligned_cols=96 Identities=18% Similarity=0.286 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHHHHHHhh-----------
Q 026318 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN----KQLIAMRADIDGIRSELVEARRAF----------- 179 (240)
Q Consensus 115 ~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~----qqip~l~aEid~lrqElqr~Raa~----------- 179 (240)
+-..++..+...++.|...-++|.++.-+.+++|+.++.+. +|+.-.+.+++.----..++|+-|
T Consensus 159 aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~ 238 (739)
T PF07111_consen 159 AHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQ 238 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccH
Confidence 33445555555555555555555555555556665555443 233334444444333344455444
Q ss_pred --hhhhhcchHHHHHHHHHHHhHHHHHHHHHHHH
Q 026318 180 --EFEKKANEEQIEQKQAMENNLISMAREIEKLR 211 (240)
Q Consensus 180 --EyEKK~~~e~~Eq~qaMEknlisMarEvEKLR 211 (240)
+.||.-..+.+.+.+ =++|-+.++-|+=.-|
T Consensus 239 ~we~Er~~L~~tVq~L~-edR~~L~~T~ELLqVR 271 (739)
T PF07111_consen 239 AWEPEREELLETVQHLQ-EDRDALQATAELLQVR 271 (739)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 677777777777766 3566566665554444
No 480
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.63 E-value=9.4e+02 Score=25.90 Aligned_cols=141 Identities=17% Similarity=0.237 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHH
Q 026318 39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRA 118 (240)
Q Consensus 39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~ 118 (240)
.+.|+---|.=|.+++-.=.-++....-|...+-..+....++.....-+.-++| ++-.||.+..|==.++-+...=-.
T Consensus 382 ~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~re-qlk~lV~~~~k~~~e~e~s~~~~~ 460 (716)
T KOG4593|consen 382 EETKLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRLAEELPQVTKERE-QLKGLVQKVDKHSLEMEASMEELY 460 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHHH-HHHHHHHHHHHhhHhhhhhhHHHH
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHHhhh
Q 026318 119 EVVQLRAEVQ-KLNSSRQELTTQIKGLTKDVNRLEAENKQ----LIAMRADIDGIRSELVEARRAFE 180 (240)
Q Consensus 119 El~Q~r~e~q-~L~a~RQELt~qvq~ltqeL~r~~~d~qq----ip~l~aEid~lrqElqr~Raa~E 180 (240)
...+.+...- +|...=.+|.+++-...|+|...+.+..- |-...-|++.|++|-.++|+..+
T Consensus 461 ~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~e 527 (716)
T KOG4593|consen 461 REITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRLRAQLE 527 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=23.62 E-value=4.4e+02 Score=22.11 Aligned_cols=13 Identities=15% Similarity=0.289 Sum_probs=5.4
Q ss_pred HHHHHHhhhhhhH
Q 026318 50 MHRIISENRHAID 62 (240)
Q Consensus 50 iqrLl~dNqRLAa 62 (240)
...|=.+|+-|..
T Consensus 44 FeqLkien~~l~~ 56 (177)
T PF13870_consen 44 FEQLKIENQQLNE 56 (177)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 482
>PRK07857 hypothetical protein; Provisional
Probab=23.47 E-value=1.8e+02 Score=23.77 Aligned_cols=38 Identities=24% Similarity=0.293 Sum_probs=30.8
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 111 RASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDV 148 (240)
Q Consensus 111 Ra~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL 148 (240)
-..+.+|.++.++-.++-+|.+.|-.++.+|..+.++-
T Consensus 28 ~~L~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K~~~ 65 (106)
T PRK07857 28 AEIDELREEIDRLDAEILALVKRRTEVSQAIGKARMAS 65 (106)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34467889999999999999999999988888777653
No 483
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=23.42 E-value=5.8e+02 Score=26.17 Aligned_cols=40 Identities=25% Similarity=0.483 Sum_probs=29.4
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 110 LRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (240)
Q Consensus 110 lRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~ 149 (240)
|.+-.++..-+..+.+++.+|...+.++..+++...++-.
T Consensus 37 L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~ 76 (618)
T PF06419_consen 37 LKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETS 76 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888888888888888888888887776655433
No 484
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=23.35 E-value=4.2e+02 Score=23.51 Aligned_cols=12 Identities=42% Similarity=0.435 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 026318 132 SSRQELTTQIKG 143 (240)
Q Consensus 132 a~RQELt~qvq~ 143 (240)
..|++|..+.+.
T Consensus 142 ~~r~~~i~~a~~ 153 (176)
T PF12999_consen 142 KIRQELIEEAKK 153 (176)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 485
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=23.18 E-value=7.9e+02 Score=24.85 Aligned_cols=55 Identities=29% Similarity=0.413 Sum_probs=38.6
Q ss_pred CccchHHHHH----HHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHH
Q 026318 35 HPMTLEEEIE----IQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRE 98 (240)
Q Consensus 35 ~p~~LEe~La----~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Re 98 (240)
-|.++..|.+ .-...|.+...+|-+|--+-..+-|.|.+.+. ..-++++|.+-|+
T Consensus 275 lP~~m~tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qe---------akek~~KEAqare 333 (442)
T PF06637_consen 275 LPKIMTTKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQE---------AKEKAGKEAQARE 333 (442)
T ss_pred chHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Confidence 4566666655 34667888999998888888888888777764 3445666666654
No 486
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=23.14 E-value=4.7e+02 Score=22.21 Aligned_cols=79 Identities=19% Similarity=0.323 Sum_probs=47.3
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHHhhhhhhhcc--------hHHHHHHHHH
Q 026318 131 NSSRQELTTQI--KGLTKDVNRLEAENKQ----LIAMRADIDGIRSELVEARRAFEFEKKAN--------EEQIEQKQAM 196 (240)
Q Consensus 131 ~a~RQELt~qv--q~ltqeL~r~~~d~qq----ip~l~aEid~lrqElqr~Raa~EyEKK~~--------~e~~Eq~qaM 196 (240)
...|-+|.++| +....++.....=... +-.++.+++.|..|++.+|..|=-=+-.+ ....||=+-.
T Consensus 29 ~~~R~dL~~KV~~~~~~~~lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~l~rRPLtk~dVeeLV~~IseQPK~I 108 (126)
T PF07028_consen 29 TCYRSDLGSKVSQKKLLEELKNLSKIQESQRSELKELKQELDVLSKELQALRKEYLERRPLTKEDVEELVLRISEQPKFI 108 (126)
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcHHH
Confidence 34677777777 3333444444333333 66677777777777777777664333333 3445677778
Q ss_pred HHhHHHHHHHHHH
Q 026318 197 ENNLISMAREIEK 209 (240)
Q Consensus 197 EknlisMarEvEK 209 (240)
|+--..+..|+-|
T Consensus 109 EkQte~LteEL~k 121 (126)
T PF07028_consen 109 EKQTEALTEELTK 121 (126)
T ss_pred HHHHHHHHHHHHH
Confidence 8766666666554
No 487
>KOG4253 consensus Tryptophan-rich basic nuclear protein [General function prediction only]
Probab=22.87 E-value=2.1e+02 Score=25.48 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=31.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHH
Q 026318 153 AENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEK 209 (240)
Q Consensus 153 ~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEK 209 (240)
.|++|--..++||.+++||+--.-+.=+|=|- --.+.++-+|..|+|+
T Consensus 41 kdakk~~q~~~ei~dmKqelnavs~qD~fAkw---------aRlnRKi~kl~~ele~ 88 (175)
T KOG4253|consen 41 KDAKKESQKVAEIQDMKQELNAVSMQDNFAKW---------ARLNRKINKLDKELET 88 (175)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH---------HHHHHHHHHHHHHHHH
Confidence 45566667788888888888665544444333 3356667777777754
No 488
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=22.75 E-value=3.7e+02 Score=21.19 Aligned_cols=42 Identities=26% Similarity=0.427 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026318 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158 (240)
Q Consensus 117 k~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqi 158 (240)
++-+.|+-+++|.|++.--.|...|..+..|.+-++.|+-+-
T Consensus 24 ~aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarA 65 (78)
T COG4238 24 NAKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARA 65 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 455667778888888877777777777777777766665543
No 489
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=22.69 E-value=5.6e+02 Score=22.96 Aligned_cols=85 Identities=15% Similarity=0.221 Sum_probs=44.0
Q ss_pred cchHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhh
Q 026318 37 MTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPV 116 (240)
Q Consensus 37 ~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~l 116 (240)
..++..+......+..+......+-.+.-.+..++..++..+......+...+.+-+. ...|+++..-=+.++ +..
T Consensus 76 ~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r-~~~L~~~g~is~~~~---~~a 151 (334)
T TIGR00998 76 TNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRR-RVPLFKKGLISREEL---DHA 151 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHCCCcCHHHH---HHH
Confidence 3456667777777766666655555555556666666665555554444433333332 334555544333322 333
Q ss_pred HHHHHHHHH
Q 026318 117 RAEVVQLRA 125 (240)
Q Consensus 117 k~El~Q~r~ 125 (240)
+.++.++.+
T Consensus 152 ~~~~~~a~~ 160 (334)
T TIGR00998 152 RKALLSAKA 160 (334)
T ss_pred HHHHHHHHH
Confidence 444444444
No 490
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=22.56 E-value=3.7e+02 Score=21.96 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR 150 (240)
Q Consensus 119 El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r 150 (240)
++.+....+......-+.|..-=...++||+.
T Consensus 15 ~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~ 46 (125)
T PF03245_consen 15 ALEAANAAIEDMQQRQQALAALDAKYTKELAD 46 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333344444443
No 491
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=22.41 E-value=5.9e+02 Score=23.08 Aligned_cols=44 Identities=11% Similarity=0.171 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhh
Q 026318 45 IQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKL 88 (240)
Q Consensus 45 ~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i 88 (240)
.+..-|..|....+++=....-|.+.-..+.++.++|.....+-
T Consensus 30 e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~ 73 (246)
T PF00769_consen 30 ESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQ 73 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555544455555555555555555554444333
No 492
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=22.40 E-value=3.1e+02 Score=21.92 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026318 129 KLNSSRQELTTQIKGLTKDVNRLEAEN 155 (240)
Q Consensus 129 ~L~a~RQELt~qvq~ltqeL~r~~~d~ 155 (240)
=|.-.++-|+.++..+.++++.+..+.
T Consensus 70 YLl~~q~~L~~~~~~l~~~~~~~~~~~ 96 (118)
T PF13815_consen 70 YLLHCQEYLSSQLEQLEERLQELQQEI 96 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555444443
No 493
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=22.38 E-value=5.2e+02 Score=28.83 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026318 134 RQELTTQIKGLTKDVNRL 151 (240)
Q Consensus 134 RQELt~qvq~ltqeL~r~ 151 (240)
.+++..+...+.++|+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~ 203 (1123)
T PRK11448 186 AAELEEKQQELEAQLEQL 203 (1123)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444444433
No 494
>PLN02320 seryl-tRNA synthetase
Probab=22.38 E-value=8.5e+02 Score=24.90 Aligned_cols=29 Identities=14% Similarity=0.289 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 120 VVQLRAEVQKLNSSRQELTTQIKGLTKDV 148 (240)
Q Consensus 120 l~Q~r~e~q~L~a~RQELt~qvq~ltqeL 148 (240)
+..+-.+-.++...-.+|-++-..+++++
T Consensus 95 l~~ld~~~r~~~~~~~~lr~ern~~sk~i 123 (502)
T PLN02320 95 VLELYENMLALQKEVERLRAERNAVANKM 123 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333434444443
No 495
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=22.34 E-value=8.3e+02 Score=25.61 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026318 130 LNSSRQELTTQIKGLTKDVNRLEAENK 156 (240)
Q Consensus 130 L~a~RQELt~qvq~ltqeL~r~~~d~q 156 (240)
|.+.-.||-.|-....+.++-++.|++
T Consensus 273 l~aE~~EleDkyAE~m~~~~EaeeELk 299 (596)
T KOG4360|consen 273 LTAELEELEDKYAECMQMLHEAEEELK 299 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444433
No 496
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=22.24 E-value=5.9e+02 Score=23.06 Aligned_cols=99 Identities=17% Similarity=0.322 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh----hhhcchHHHH
Q 026318 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEF----EKKANEEQIE 191 (240)
Q Consensus 116 lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey----EKK~~~e~~E 191 (240)
+..++.+++..+-++.+....|--++..+..+..+...-.+ -+|.+.-+.|=.+.---...+|. .+..+...-+
T Consensus 36 ~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~--~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~ 113 (225)
T COG1842 36 MESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAE--LALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEE 113 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555444433322 23444444444333333333332 2334445556
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhh
Q 026318 192 QKQAMENNLISMAREIEKLRAELLN 216 (240)
Q Consensus 192 q~qaMEknlisMarEvEKLRaElan 216 (240)
+...|++++..+-.-|..+++...-
T Consensus 114 ~~~~l~~~~~~Le~Ki~e~~~~~~~ 138 (225)
T COG1842 114 QVEKLKKQLAALEQKIAELRAKKEA 138 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888888888888887543
No 497
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=22.21 E-value=2.7e+02 Score=24.92 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=10.1
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 026318 156 KQLIAMRADIDGIRSELVEA 175 (240)
Q Consensus 156 qqip~l~aEid~lrqElqr~ 175 (240)
.....+++|.+.|++|+..+
T Consensus 69 ~~~~~l~~en~~L~~e~~~l 88 (276)
T PRK13922 69 ASLFDLREENEELKKELLEL 88 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555443
No 498
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=22.17 E-value=2e+02 Score=22.99 Aligned_cols=38 Identities=24% Similarity=0.380 Sum_probs=0.0
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 111 RASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDV 148 (240)
Q Consensus 111 Ra~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL 148 (240)
..++.+..++..+..++++|...-+++..++..+.+|+
T Consensus 80 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 80 SQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 499
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=22.14 E-value=2.9e+02 Score=19.50 Aligned_cols=39 Identities=26% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHH
Q 026318 41 EEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIH 79 (240)
Q Consensus 41 e~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~ 79 (240)
..+..-...+..|-.+|..|-.+-..|++++...+.+++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 500
>PRK10404 hypothetical protein; Provisional
Probab=22.14 E-value=4.1e+02 Score=21.20 Aligned_cols=87 Identities=8% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHH
Q 026318 134 RQELTTQIKGLTKDVNRLEAENK--QLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLR 211 (240)
Q Consensus 134 RQELt~qvq~ltqeL~r~~~d~q--qip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLR 211 (240)
+..|...++.|..|++.+-.+.. .-+.+..=.+.+..=+..+|..+. ...-..+++.+.+-.....-++|
T Consensus 7 ~~~l~~dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~---~~~~~~~~~~k~aa~~td~yV~e----- 78 (101)
T PRK10404 7 DTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVS---QASDSYYYRAKQAVYRADDYVHE----- 78 (101)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHh-----
Q ss_pred HHHhhhcccccccccc----chhhhhhhh
Q 026318 212 AELLNTERRACGLGKI----SFFLGALTW 236 (240)
Q Consensus 212 aElanaekRa~~~~~~----g~~~~~~~~ 236 (240)
-||.+-++ |+.+|.|.|
T Consensus 79 --------~Pw~avGiaagvGlllG~Ll~ 99 (101)
T PRK10404 79 --------KPWQGIGVGAAVGLVLGLLLA 99 (101)
T ss_pred --------CcHHHHHHHHHHHHHHHHHHh
Done!