Query 026318
Match_columns 240
No_of_seqs 88 out of 90
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 10:42:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026318.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026318hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 97.2 0.057 2E-06 43.2 22.8 13 43-55 8-20 (284)
2 1i84_S Smooth muscle myosin he 96.3 0.012 4.2E-07 61.1 9.1 41 39-79 862-902 (1184)
3 3ol1_A Vimentin; structural ge 96.0 0.11 3.8E-06 41.0 11.6 88 37-152 16-103 (119)
4 2dfs_A Myosin-5A; myosin-V, in 96.0 0.12 4E-06 53.9 14.7 124 50-180 916-1040(1080)
5 3na7_A HP0958; flagellar bioge 95.7 0.93 3.2E-05 39.2 18.1 115 62-180 32-149 (256)
6 3na7_A HP0958; flagellar bioge 95.4 1.1 3.9E-05 38.7 20.0 162 40-212 24-186 (256)
7 1i84_S Smooth muscle myosin he 95.3 0.016 5.4E-07 60.2 5.4 36 39-74 869-904 (1184)
8 3swk_A Vimentin; cytoskeleton, 94.7 0.21 7.1E-06 37.7 8.7 50 102-151 33-82 (86)
9 3oja_B Anopheles plasmodium-re 94.4 0.2 6.8E-06 46.8 9.9 29 158-186 532-560 (597)
10 3oja_B Anopheles plasmodium-re 94.3 0.83 2.8E-05 42.6 13.7 50 168-217 528-577 (597)
11 2dfs_A Myosin-5A; myosin-V, in 93.9 0.86 2.9E-05 47.5 14.1 56 115-176 988-1043(1080)
12 3m91_A Proteasome-associated A 90.9 0.62 2.1E-05 32.5 5.9 43 40-82 8-50 (51)
13 3vkg_A Dynein heavy chain, cyt 89.8 12 0.00041 43.7 18.1 60 161-220 2012-2071(3245)
14 3vkg_A Dynein heavy chain, cyt 88.7 29 0.00099 40.6 20.1 100 101-200 1994-2103(3245)
15 1wt6_A Myotonin-protein kinase 88.6 1.6 5.5E-05 33.2 7.1 44 104-147 17-60 (81)
16 2fxo_A Myosin heavy chain, car 88.5 7.8 0.00027 30.5 14.9 110 94-209 13-122 (129)
17 3ghg_A Fibrinogen alpha chain; 88.4 5 0.00017 39.6 12.2 92 117-215 63-155 (562)
18 3i00_A HIP-I, huntingtin-inter 88.4 3.3 0.00011 33.1 9.2 83 88-186 9-102 (120)
19 2no2_A HIP-I, huntingtin-inter 87.7 8.4 0.00029 30.0 11.9 78 116-193 13-91 (107)
20 2v71_A Nuclear distribution pr 86.8 14 0.00049 31.6 14.2 39 39-77 47-85 (189)
21 2w83_C C-JUN-amino-terminal ki 84.9 4.7 0.00016 30.4 7.8 69 47-150 8-76 (77)
22 3lay_A Zinc resistance-associa 83.5 6.6 0.00022 33.1 9.1 34 147-180 104-137 (175)
23 1jcd_A Major outer membrane li 82.5 5.5 0.00019 27.7 6.8 41 127-177 6-46 (52)
24 3hnw_A Uncharacterized protein 81.9 19 0.00064 29.1 11.8 83 93-175 38-129 (138)
25 3tnu_A Keratin, type I cytoske 81.3 18 0.00061 28.4 10.5 85 69-163 31-115 (131)
26 3o0z_A RHO-associated protein 80.6 25 0.00086 29.7 16.7 64 90-156 44-114 (168)
27 4e61_A Protein BIM1; EB1-like 80.4 9.1 0.00031 30.2 8.2 55 110-164 3-57 (106)
28 3ol1_A Vimentin; structural ge 80.3 19 0.00065 28.1 11.8 73 104-182 37-109 (119)
29 1x79_B RAB GTPase binding effe 80.1 21 0.00071 28.4 10.8 94 114-216 9-102 (112)
30 2v4h_A NF-kappa-B essential mo 79.6 20 0.00067 28.6 10.0 79 67-156 29-107 (110)
31 3bas_A Myosin heavy chain, str 79.5 17 0.00058 27.0 9.7 64 104-177 10-73 (89)
32 1l8d_A DNA double-strand break 79.4 5.9 0.0002 29.7 6.7 44 113-156 5-48 (112)
33 3tnu_B Keratin, type II cytosk 79.3 21 0.00071 27.9 11.5 84 69-162 29-112 (129)
34 3m9b_A Proteasome-associated A 79.2 2.1 7.2E-05 38.3 4.8 44 40-83 53-96 (251)
35 3i00_A HIP-I, huntingtin-inter 78.0 6.7 0.00023 31.3 6.9 54 75-131 21-74 (120)
36 1x79_B RAB GTPase binding effe 76.3 18 0.00062 28.7 8.9 60 63-125 14-73 (112)
37 4dk0_A Putative MACA; alpha-ha 76.1 12 0.00041 32.6 8.6 98 116-227 68-165 (369)
38 4dzn_A Coiled-coil peptide CC- 75.9 3.4 0.00012 26.2 3.6 27 63-89 3-29 (33)
39 3plt_A Sphingolipid long chain 75.1 19 0.00065 31.9 9.6 128 92-238 88-217 (234)
40 2w6b_A RHO guanine nucleotide 74.9 9.5 0.00033 27.1 6.2 36 153-188 7-42 (56)
41 1jcd_A Major outer membrane li 74.2 7.3 0.00025 27.1 5.4 31 122-152 8-38 (52)
42 2fxo_A Myosin heavy chain, car 73.8 30 0.001 27.1 15.2 89 103-194 8-96 (129)
43 3iox_A AGI/II, PA; alpha helix 73.3 70 0.0024 31.2 13.8 49 65-113 5-53 (497)
44 1uix_A RHO-associated kinase; 72.7 16 0.00054 27.0 7.2 43 123-165 2-44 (71)
45 3ghg_A Fibrinogen alpha chain; 71.6 82 0.0028 31.1 15.1 79 86-180 77-155 (562)
46 2w6a_A ARF GTPase-activating p 71.0 17 0.00059 26.3 6.9 43 116-158 18-60 (63)
47 1joc_A EEA1, early endosomal a 70.8 19 0.00066 28.2 7.9 46 95-143 5-50 (125)
48 2v4h_A NF-kappa-B essential mo 69.7 40 0.0014 26.8 11.5 42 139-180 45-86 (110)
49 3fpp_A Macrolide-specific effl 69.3 13 0.00046 31.9 7.3 62 116-177 67-128 (341)
50 3mq7_A Bone marrow stromal ant 69.0 17 0.00059 29.3 7.2 16 67-82 30-45 (121)
51 3lay_A Zinc resistance-associa 69.0 27 0.00092 29.3 8.8 21 158-178 87-107 (175)
52 1deq_A Fibrinogen (alpha chain 68.4 50 0.0017 31.3 11.3 42 173-214 116-157 (390)
53 3mov_A Lamin-B1; LMNB1, B-type 68.3 30 0.001 26.3 8.2 80 92-180 10-89 (95)
54 3o0z_A RHO-associated protein 68.0 54 0.0019 27.6 15.2 113 86-203 20-137 (168)
55 1go4_E MAD1 (mitotic arrest de 67.6 21 0.0007 27.9 7.2 22 198-219 75-96 (100)
56 1hjb_A Ccaat/enhancer binding 66.7 17 0.00059 27.5 6.5 54 107-160 25-78 (87)
57 2ocy_A RAB guanine nucleotide 66.2 53 0.0018 27.3 9.9 35 100-137 12-46 (154)
58 3kqg_A Langerin, C-type lectin 65.6 7.2 0.00025 30.6 4.4 37 137-173 4-40 (182)
59 2xnx_M M protein, M1-BC1; cell 65.5 11 0.00039 31.3 5.7 69 117-191 72-140 (146)
60 1gu4_A CAAT/enhancer binding p 64.9 17 0.0006 26.9 6.1 53 107-159 25-77 (78)
61 1m1j_C Fibrinogen gamma chain; 64.8 63 0.0021 30.4 11.3 40 98-137 27-67 (409)
62 3s9g_A Protein hexim1; cyclin 64.2 31 0.0011 27.2 7.7 31 126-156 52-82 (104)
63 3jsv_C NF-kappa-B essential mo 63.7 35 0.0012 26.5 7.8 77 67-154 7-83 (94)
64 3tnu_B Keratin, type II cytosk 63.4 51 0.0017 25.7 11.9 58 81-148 62-119 (129)
65 2js5_A Uncharacterized protein 63.2 28 0.00094 25.7 6.8 57 119-178 4-60 (71)
66 2wt7_A Proto-oncogene protein 62.7 18 0.00063 25.2 5.6 19 161-179 42-60 (63)
67 1m1j_B Fibrinogen beta chain; 61.6 93 0.0032 29.9 12.0 23 157-179 169-191 (464)
68 3tnu_A Keratin, type I cytoske 60.8 58 0.002 25.4 11.6 57 83-149 66-122 (131)
69 3l4f_A RHO guanine nucleotide 60.4 18 0.00061 26.1 5.2 43 157-206 8-50 (61)
70 4dci_A Uncharacterized protein 59.6 65 0.0022 26.5 9.3 80 114-194 24-104 (150)
71 3csx_A Putative uncharacterize 59.4 29 0.001 26.2 6.5 58 119-179 16-73 (81)
72 1wle_A Seryl-tRNA synthetase; 58.9 1E+02 0.0036 29.5 11.9 24 121-144 80-103 (501)
73 1gk4_A Vimentin; intermediate 57.9 52 0.0018 24.0 10.2 23 140-162 41-63 (84)
74 1ci6_A Transcription factor AT 57.8 33 0.0011 24.0 6.2 33 117-149 22-54 (63)
75 2yy0_A C-MYC-binding protein; 57.7 14 0.00049 25.4 4.2 25 115-139 23-47 (53)
76 2qyw_A Vesicle transport throu 57.5 60 0.002 24.5 8.6 40 100-155 62-101 (102)
77 2no2_A HIP-I, huntingtin-inter 57.5 64 0.0022 24.9 14.3 31 102-132 45-75 (107)
78 1vcs_A Vesicle transport throu 56.9 61 0.0021 24.5 8.4 87 35-157 6-92 (102)
79 4fla_A Regulation of nuclear P 56.9 79 0.0027 25.8 9.6 105 52-167 29-142 (152)
80 1t2k_D Cyclic-AMP-dependent tr 56.6 39 0.0014 23.1 6.4 31 119-149 23-53 (61)
81 3mq9_A Bone marrow stromal ant 55.8 1.2E+02 0.004 27.4 12.5 109 58-183 362-470 (471)
82 3mq7_A Bone marrow stromal ant 54.8 83 0.0028 25.4 9.8 9 115-123 61-69 (121)
83 3onj_A T-snare VTI1; helix, HA 54.7 64 0.0022 24.1 9.8 40 120-159 50-93 (97)
84 2zqm_A Prefoldin beta subunit 54.1 40 0.0014 25.0 6.6 39 50-88 8-46 (117)
85 3hnw_A Uncharacterized protein 53.9 84 0.0029 25.2 11.5 94 47-155 38-133 (138)
86 2jee_A YIIU; FTSZ, septum, coi 53.6 69 0.0023 24.1 9.0 57 93-152 12-68 (81)
87 2w83_C C-JUN-amino-terminal ki 53.4 69 0.0023 24.0 8.3 53 114-176 12-64 (77)
88 3a7p_A Autophagy protein 16; c 52.7 1E+02 0.0034 25.7 10.7 30 112-141 97-126 (152)
89 1t2k_D Cyclic-AMP-dependent tr 52.7 35 0.0012 23.4 5.6 18 160-177 40-57 (61)
90 3bas_A Myosin heavy chain, str 51.8 70 0.0024 23.6 9.5 47 91-140 11-57 (89)
91 2yy0_A C-MYC-binding protein; 51.1 31 0.001 23.7 5.0 28 126-153 20-47 (53)
92 3jsv_C NF-kappa-B essential mo 50.8 84 0.0029 24.3 8.2 40 115-154 51-90 (94)
93 1gd2_E Transcription factor PA 50.7 23 0.00078 25.8 4.6 21 87-107 22-42 (70)
94 2wt7_A Proto-oncogene protein 50.4 51 0.0017 22.8 6.2 34 118-151 23-56 (63)
95 3s9g_A Protein hexim1; cyclin 49.9 92 0.0032 24.5 8.8 23 156-178 65-87 (104)
96 3sjb_C Golgi to ER traffic pro 49.1 21 0.00071 27.6 4.3 36 146-181 46-81 (93)
97 4emc_A Monopolin complex subun 48.8 35 0.0012 29.4 6.1 49 37-85 9-57 (190)
98 3a7o_A Autophagy protein 16; c 48.8 75 0.0026 23.6 7.1 58 53-131 9-66 (75)
99 2ke4_A CDC42-interacting prote 48.7 31 0.0011 26.4 5.3 20 197-216 61-80 (98)
100 1gk4_A Vimentin; intermediate 48.5 76 0.0026 23.1 7.7 61 81-144 13-73 (84)
101 2d1l_A Metastasis suppressor p 48.4 1.4E+02 0.0049 26.2 11.7 118 97-216 83-232 (253)
102 3r4h_A Coiled coil helix CC-TE 47.9 20 0.00067 22.8 3.3 24 65-88 5-28 (34)
103 2dq0_A Seryl-tRNA synthetase; 47.4 1.3E+02 0.0043 28.3 10.3 26 119-144 39-64 (455)
104 4ad8_A DNA repair protein RECN 46.0 1.8E+02 0.0063 26.8 14.6 45 136-180 289-333 (517)
105 2eqb_B RAB guanine nucleotide 45.8 61 0.0021 25.1 6.5 38 115-152 2-39 (97)
106 1s1c_X RHO-associated, coiled- 45.2 78 0.0027 23.2 6.7 30 123-152 4-33 (71)
107 1y1u_A Signal transducer and a 45.2 1E+02 0.0035 30.4 9.6 29 152-180 32-60 (585)
108 1x8y_A Lamin A/C; structural p 45.0 82 0.0028 23.1 7.0 28 136-163 39-66 (86)
109 1jnm_A Proto-oncogene C-JUN; B 44.8 39 0.0013 23.3 4.9 32 118-149 22-53 (62)
110 2xdj_A Uncharacterized protein 44.6 61 0.0021 24.1 6.2 29 153-181 17-45 (83)
111 3qne_A Seryl-tRNA synthetase, 44.4 87 0.003 30.1 8.8 27 118-144 40-66 (485)
112 3ibp_A Chromosome partition pr 43.6 2E+02 0.0067 26.4 10.5 99 60-163 15-115 (302)
113 3viq_A SWI5-dependent recombin 43.4 38 0.0013 26.9 5.2 36 158-193 9-44 (122)
114 2ve7_A Kinetochore protein HEC 42.5 27 0.00091 31.4 4.6 46 152-200 181-226 (315)
115 2e7s_A RAB guanine nucleotide 42.5 22 0.00074 29.2 3.7 21 116-136 13-33 (135)
116 1fxk_A Prefoldin; archaeal pro 42.3 52 0.0018 24.0 5.5 16 66-81 19-34 (107)
117 1ses_A Seryl-tRNA synthetase; 41.9 1.6E+02 0.0056 27.2 10.0 26 117-142 34-59 (421)
118 2lw1_A ABC transporter ATP-bin 41.9 63 0.0021 23.6 5.9 56 116-175 20-75 (89)
119 2efl_A Formin-binding protein 41.4 1.5E+02 0.0053 24.6 14.0 61 120-180 78-140 (305)
120 1hjb_A Ccaat/enhancer binding 40.9 58 0.002 24.5 5.6 20 160-179 54-73 (87)
121 1fxk_C Protein (prefoldin); ar 39.6 60 0.0021 24.8 5.7 44 126-169 2-45 (133)
122 3oa7_A Head morphogenesis prot 39.2 63 0.0022 28.2 6.3 24 120-143 32-55 (206)
123 2jee_A YIIU; FTSZ, septum, coi 38.9 1.2E+02 0.0042 22.7 7.7 37 186-222 36-72 (81)
124 3fx0_A NF-kappa-B essential mo 38.7 91 0.0031 24.2 6.5 52 141-192 40-94 (96)
125 3htk_A Structural maintenance 38.0 89 0.003 20.8 8.6 58 115-182 2-59 (60)
126 3okq_A BUD site selection prot 37.9 1.7E+02 0.0057 24.1 8.3 69 123-191 19-89 (141)
127 1gu4_A CAAT/enhancer binding p 37.9 61 0.0021 23.9 5.2 20 160-179 54-73 (78)
128 2lf0_A Uncharacterized protein 37.6 63 0.0022 26.1 5.6 57 114-182 6-62 (123)
129 3m91_A Proteasome-associated A 37.4 73 0.0025 21.9 5.2 39 50-88 11-49 (51)
130 3kqg_A Langerin, C-type lectin 37.2 28 0.00097 27.1 3.6 12 138-149 22-33 (182)
131 3vp9_A General transcriptional 37.2 78 0.0027 24.3 5.9 45 38-85 40-84 (92)
132 1gd2_E Transcription factor PA 36.1 56 0.0019 23.7 4.7 13 66-78 54-66 (70)
133 1deq_A Fibrinogen (alpha chain 35.8 2.9E+02 0.0099 26.2 13.1 105 50-181 54-159 (390)
134 2dq0_A Seryl-tRNA synthetase; 35.5 1.2E+02 0.004 28.5 8.0 34 118-151 31-64 (455)
135 3s4r_A Vimentin; alpha-helix, 35.4 1.4E+02 0.0047 22.3 7.7 13 163-175 77-89 (93)
136 1yke_B RNA polymerase II holoe 35.1 1.8E+02 0.0062 23.6 8.9 77 59-149 54-130 (151)
137 3swk_A Vimentin; cytoskeleton, 35.0 1.1E+02 0.0039 22.5 6.4 56 136-208 4-59 (86)
138 3lss_A Seryl-tRNA synthetase; 34.5 2.8E+02 0.0097 26.5 10.6 28 118-145 44-71 (484)
139 2xv5_A Lamin-A/C; structural p 33.2 1.4E+02 0.0047 21.7 7.8 55 125-182 5-59 (74)
140 2dq3_A Seryl-tRNA synthetase; 33.1 1.2E+02 0.0041 28.1 7.6 31 113-143 70-100 (425)
141 3qne_A Seryl-tRNA synthetase, 32.9 1.5E+02 0.0051 28.5 8.4 35 118-152 33-67 (485)
142 2d4x_A Flagellar HOOK-associat 32.8 2.1E+02 0.0073 23.7 8.7 78 102-179 10-90 (248)
143 2y39_A Nickel and cobalt resis 32.6 53 0.0018 26.2 4.4 21 59-79 35-55 (118)
144 3tul_A Cell invasion protein S 32.6 90 0.0031 26.2 5.9 46 135-180 79-124 (158)
145 3ni0_A Bone marrow stromal ant 32.2 1.7E+02 0.0058 22.8 7.0 37 143-179 54-90 (99)
146 3viq_A SWI5-dependent recombin 32.1 72 0.0024 25.3 5.1 61 60-147 5-65 (122)
147 1ci6_A Transcription factor AT 31.2 1.3E+02 0.0045 20.8 5.9 21 159-179 40-60 (63)
148 2f1m_A Acriflavine resistance 29.9 2.3E+02 0.008 23.3 9.7 66 141-227 76-141 (277)
149 2v71_A Nuclear distribution pr 29.7 2.6E+02 0.0089 23.8 19.4 30 67-96 22-51 (189)
150 4dyl_A Tyrosine-protein kinase 29.1 3.2E+02 0.011 24.7 14.6 37 50-88 74-110 (406)
151 2ve7_C Kinetochore protein NUF 28.6 37 0.0013 29.6 3.2 65 46-110 139-206 (250)
152 2w6b_A RHO guanine nucleotide 28.4 1.4E+02 0.0047 21.2 5.4 29 57-85 5-33 (56)
153 3vp9_A General transcriptional 28.3 1.1E+02 0.0038 23.4 5.4 37 114-150 17-54 (92)
154 1xaw_A Occludin; coiled-coil, 28.0 1.2E+02 0.004 24.9 5.8 12 164-175 91-102 (140)
155 2efk_A CDC42-interacting prote 28.0 2.6E+02 0.009 23.2 18.9 22 50-71 71-92 (301)
156 4dk0_A Putative MACA; alpha-ha 27.7 2.9E+02 0.0099 23.7 10.3 12 39-50 68-79 (369)
157 4etp_A Kinesin-like protein KA 27.3 2E+02 0.0068 26.5 8.0 50 122-171 7-56 (403)
158 3uul_A Utrophin; spectrin repe 26.9 1.7E+02 0.0058 20.7 8.1 83 97-179 12-101 (118)
159 1t3j_A Mitofusin 1; coiled coi 26.8 2.2E+02 0.0074 21.9 8.3 20 133-152 48-67 (96)
160 3v47_C Flagellin; innate immun 26.8 2.6E+02 0.009 26.4 8.8 81 101-181 8-91 (425)
161 1go4_E MAD1 (mitotic arrest de 26.7 2.2E+02 0.0076 22.0 8.3 63 117-179 11-91 (100)
162 1uii_A Geminin; human, DNA rep 26.7 92 0.0031 23.6 4.6 39 50-88 41-79 (83)
163 1m1j_C Fibrinogen gamma chain; 26.5 3.5E+02 0.012 25.4 9.5 29 191-219 105-133 (409)
164 2j69_A Bacterial dynamin-like 26.4 4.6E+02 0.016 25.5 12.3 57 159-215 633-689 (695)
165 3ra3_A P1C; coiled coil domain 26.2 21 0.00071 21.8 0.8 23 52-74 4-26 (28)
166 4emc_A Monopolin complex subun 26.1 1.9E+02 0.0067 24.8 7.1 31 117-147 12-42 (190)
167 4b6x_A AVRRPS4, avirulence pro 26.1 2.2E+02 0.0075 21.7 6.7 14 141-154 38-51 (90)
168 1g6u_A Domain swapped dimer; d 26.0 1.5E+02 0.0052 19.9 5.1 43 158-208 2-44 (48)
169 1wt6_A Myotonin-protein kinase 25.8 2.1E+02 0.0073 21.5 8.3 14 124-137 20-33 (81)
170 2b9c_A Striated-muscle alpha t 25.6 1.2E+02 0.0042 24.5 5.5 85 139-223 3-98 (147)
171 1x8y_A Lamin A/C; structural p 25.2 2E+02 0.0069 21.0 9.0 15 176-190 65-79 (86)
172 1ykh_B RNA polymerase II holoe 25.2 2.4E+02 0.0083 22.2 7.2 73 6-88 29-129 (132)
173 3pwx_A Putative flagellar HOOK 24.8 3.2E+02 0.011 23.1 8.8 79 101-179 11-92 (239)
174 2nrj_A HBL B protein; enteroto 24.8 2.8E+02 0.0096 25.0 8.4 69 60-128 121-193 (346)
175 2dq3_A Seryl-tRNA synthetase; 24.7 1E+02 0.0035 28.5 5.6 26 119-144 38-63 (425)
176 1wle_A Seryl-tRNA synthetase; 24.7 3.6E+02 0.012 25.8 9.4 15 160-174 134-148 (501)
177 1bg1_A Protein (transcription 24.6 3.3E+02 0.011 27.0 9.3 82 66-151 24-105 (596)
178 2v0o_A FCHO2, FCH domain only 24.4 2.9E+02 0.01 22.6 16.1 21 51-71 76-96 (276)
179 3fpp_A Macrolide-specific effl 24.2 2.7E+02 0.0091 23.7 7.8 8 118-125 114-121 (341)
180 2jn6_A Protein CGL2762, transp 24.1 20 0.00067 25.6 0.4 31 159-189 62-92 (97)
181 3vlc_E Golgi to ER traffic pro 24.1 25 0.00085 27.3 1.0 35 146-180 53-87 (94)
182 3q8t_A Beclin-1; autophagy, AT 23.4 2.4E+02 0.008 21.1 14.2 25 187-211 70-94 (96)
183 3fhn_A Protein transport prote 23.4 3.9E+02 0.013 27.0 9.7 47 119-165 11-57 (706)
184 3mov_A Lamin-B1; LMNB1, B-type 23.2 2.4E+02 0.0082 21.2 8.4 28 83-110 26-53 (95)
185 2rjz_A PILO protein; structura 23.0 86 0.0029 25.0 4.1 36 144-179 3-38 (147)
186 1use_A VAsp, vasodilator-stimu 23.0 1.5E+02 0.005 20.2 4.6 34 129-174 8-41 (45)
187 2dgc_A Protein (GCN4); basic d 22.9 1.4E+02 0.0047 20.8 4.7 12 161-172 49-60 (63)
188 1cii_A Colicin IA; bacteriocin 22.8 5.3E+02 0.018 25.5 10.1 74 111-185 357-430 (602)
189 1jnm_A Proto-oncogene C-JUN; B 22.7 1.1E+02 0.0037 21.0 4.1 30 47-76 28-57 (62)
190 2v0o_A FCHO2, FCH domain only 22.2 3.3E+02 0.011 22.3 15.7 35 121-155 76-110 (276)
191 1ses_A Seryl-tRNA synthetase; 22.0 4.6E+02 0.016 24.1 9.4 13 194-206 166-178 (421)
192 3q4f_C DNA repair protein XRCC 22.0 66 0.0022 27.7 3.3 24 41-64 161-184 (186)
193 1t3j_A Mitofusin 1; coiled coi 21.9 2.2E+02 0.0076 21.9 6.1 40 80-119 40-79 (96)
194 1m1j_A Fibrinogen alpha subuni 21.6 5.7E+02 0.019 24.9 13.1 43 173-215 114-156 (491)
195 2nrj_A HBL B protein; enteroto 21.4 4.5E+02 0.015 23.6 12.6 22 152-173 172-193 (346)
196 2eqb_B RAB guanine nucleotide 21.0 2.9E+02 0.0099 21.3 11.3 37 116-152 24-60 (97)
197 2vkl_A RV0948C/MT0975; helical 20.8 1.8E+02 0.0063 21.3 5.3 35 113-147 14-48 (90)
198 3ra3_B P2F; coiled coil domain 20.5 54 0.0018 20.0 1.8 20 62-81 7-26 (28)
199 3s4r_A Vimentin; alpha-helix, 20.2 2.7E+02 0.0093 20.7 9.1 9 161-169 82-90 (93)
200 1lwu_C Fibrinogen gamma chain; 20.1 2.4E+02 0.0083 25.6 6.9 12 97-108 8-19 (323)
201 3u06_A Protein claret segregat 20.0 2.4E+02 0.0083 26.1 7.1 51 39-89 8-58 (412)
202 1wlq_A Geminin; coiled-coil; 2 20.0 1.3E+02 0.0045 22.8 4.3 40 49-88 32-71 (83)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.21 E-value=0.057 Score=43.24 Aligned_cols=13 Identities=0% Similarity=0.261 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 026318 43 IEIQRREMHRIIS 55 (240)
Q Consensus 43 La~Q~~EiqrLl~ 55 (240)
+..-..+|..+..
T Consensus 8 ~~~l~~~~~~~~~ 20 (284)
T 1c1g_A 8 MQMLKLDKENALD 20 (284)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHH
Confidence 3333333333333
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.25 E-value=0.012 Score=61.07 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHH
Q 026318 39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIH 79 (240)
Q Consensus 39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~ 79 (240)
++++|..-...+.++-..-..+-.....|++++..++.+++
T Consensus 862 L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~ 902 (1184)
T 1i84_S 862 KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ 902 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433333333333444444444444444443
No 3
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=95.99 E-value=0.11 Score=41.04 Aligned_cols=88 Identities=18% Similarity=0.332 Sum_probs=64.0
Q ss_pred cchHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhh
Q 026318 37 MTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPV 116 (240)
Q Consensus 37 ~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~l 116 (240)
..+|..|..-...|..+..||-+|......++..+..-+ .|.|.|+.....+
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk----------------------------~KyE~E~~~r~~~ 67 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR----------------------------EKLQEEMLQREEA 67 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HhhHHHHHHHHHH
Confidence 467888888888888888888887766555554443322 1334444444556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (240)
Q Consensus 117 k~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~ 152 (240)
.+++.-++.++......|-+|-.+|++|+.||.=.+
T Consensus 68 E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLK 103 (119)
T 3ol1_A 68 ENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999999987543
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.96 E-value=0.12 Score=53.92 Aligned_cols=124 Identities=12% Similarity=0.124 Sum_probs=38.6
Q ss_pred HHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHH
Q 026318 50 MHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQK 129 (240)
Q Consensus 50 iqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~ 129 (240)
+..|...|..|-..-..|++.|.....+...|...+..+....+.++-+| +.++...+....|+..+...+.+
T Consensus 916 ~~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L-------~~~l~~le~~~~e~~~~~~~v~~ 988 (1080)
T 2dfs_A 916 VERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL-------RSDVERLRMSEEEAKNATNRVLS 988 (1080)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHH-------HHTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666665555555555555554444444444444 22222222333344444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHhhh
Q 026318 130 LNSSRQELTTQIKGLTKDVNRLEAENKQL-IAMRADIDGIRSELVEARRAFE 180 (240)
Q Consensus 130 L~a~RQELt~qvq~ltqeL~r~~~d~qqi-p~l~aEid~lrqElqr~Raa~E 180 (240)
|...=.+|..+++.+++|........+++ -.|...+.+|.+|.+.+|..++
T Consensus 989 L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~ 1040 (1080)
T 2dfs_A 989 LQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKE 1040 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433333222 1344555556666666655443
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.69 E-value=0.93 Score=39.24 Aligned_cols=115 Identities=12% Similarity=0.156 Sum_probs=69.5
Q ss_pred HhhHHHHHHHHhhHHHHHHHhhhhhhhhhh---hhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026318 62 DDNTHLQRELTASKDEIHRLGQIIPKLRAD---KEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELT 138 (240)
Q Consensus 62 athvaLrqeL~aaq~El~~l~~~i~~i~ae---~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt 138 (240)
..-..|..++...+..+..+...+.+++.+ .+..+..+-.++.+.+..+.++. =-.|+..+..|+..+....+.|-
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~-~~kE~~aL~kEie~~~~~i~~lE 110 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK-SERELRSLNIEEDIAKERSNQAN 110 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444333333332 46667777778888887776654 23578888888888888888888
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318 139 TQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (240)
Q Consensus 139 ~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (240)
.++..++..+.....+ +-.+.++++.++.++...++.++
T Consensus 111 ~eile~~e~ie~~~~~---l~~~~~~l~~~~~~l~~~~~~~~ 149 (256)
T 3na7_A 111 REIENLQNEIKRKSEK---QEDLKKEMLELEKLALELESLVE 149 (256)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887655544 33445555555555555554443
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.44 E-value=1.1 Score=38.66 Aligned_cols=162 Identities=14% Similarity=0.167 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHH
Q 026318 40 EEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAE 119 (240)
Q Consensus 40 Ee~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~E 119 (240)
+.++..-..|+..|-.+=..+-+....++.++...+.++..+...|..+++--+-.-..+ +.+ + .-|..+++..|
T Consensus 24 ~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l-~~v-~---~~kE~~aL~kE 98 (256)
T 3na7_A 24 EPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM-SEI-K---SERELRSLNIE 98 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHC-S---SSSHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hcc-C---CHHHHHHHHHH
Confidence 333444445555555555555566666666666666666666655555544332221111 111 1 33445677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHh
Q 026318 120 VVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENN 199 (240)
Q Consensus 120 l~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEkn 199 (240)
+..+..++..|...-.++..++..+..++...... +-.++++++..+.++...-+.++-|-. ....+...+.+.
T Consensus 99 ie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~---l~~~~~~l~~~~~~~~~~~~e~~~e~~---~l~~~r~~l~~~ 172 (256)
T 3na7_A 99 EDIAKERSNQANREIENLQNEIKRKSEKQEDLKKE---MLELEKLALELESLVENEVKNIKETQQ---IIFKKKEDLVEK 172 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhc
Confidence 77777777777777777777777777777666544 445566666666666666655553322 222344444443
Q ss_pred H-HHHHHHHHHHHH
Q 026318 200 L-ISMAREIEKLRA 212 (240)
Q Consensus 200 l-isMarEvEKLRa 212 (240)
+ -.+-..-+++|.
T Consensus 173 i~~~lL~~Yerir~ 186 (256)
T 3na7_A 173 TEPKIYSFYERIRR 186 (256)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 3 234445666665
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.31 E-value=0.016 Score=60.24 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhh
Q 026318 39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTAS 74 (240)
Q Consensus 39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aa 74 (240)
++++|.....++..|-.....|-..-..|++++...
T Consensus 869 l~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e 904 (1184)
T 1i84_S 869 TKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAE 904 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444343433333444444333
No 8
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=94.68 E-value=0.21 Score=37.66 Aligned_cols=50 Identities=20% Similarity=0.326 Sum_probs=44.5
Q ss_pred hhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 102 RGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRL 151 (240)
Q Consensus 102 k~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~ 151 (240)
=-.|.|.|+.-...+-+|+.-+|.++..+.-.|-+|-++|.+|+.||.=.
T Consensus 33 fk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 33 LREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888889999999999999999999999999999999998743
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.44 E-value=0.2 Score=46.78 Aligned_cols=29 Identities=7% Similarity=0.188 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 026318 158 LIAMRADIDGIRSELVEARRAFEFEKKAN 186 (240)
Q Consensus 158 ip~l~aEid~lrqElqr~Raa~EyEKK~~ 186 (240)
+-..+.+++.+++|..+.+..++-.|+.-
T Consensus 532 ~~~~~~~~~~~~~~~~~le~~~~~~~~~~ 560 (597)
T 3oja_B 532 ADAKQKETEDLEQENIALEKQLDNKRAKQ 560 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcchhhHHhhhHHHHHHHhhhhhHH
Confidence 33455556666666666665555444433
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.27 E-value=0.83 Score=42.57 Aligned_cols=50 Identities=14% Similarity=0.055 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 026318 168 IRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNT 217 (240)
Q Consensus 168 lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaElana 217 (240)
.+++++.-...+++-++-..+.-.+.+.+.+.+..+.+|+.++++++..-
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 528 RRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444345555666667778888888888988998887653
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.86 E-value=0.86 Score=47.54 Aligned_cols=56 Identities=11% Similarity=0.268 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 026318 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEAR 176 (240)
Q Consensus 115 ~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~R 176 (240)
.+..|+..++.+++++.....+|-.+.+.+..+|+ .++..|..|...|+|++..+-
T Consensus 988 ~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~------~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 988 SLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE------QLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666666666666665555 556666666666666666555
No 12
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=90.93 E-value=0.62 Score=32.46 Aligned_cols=43 Identities=19% Similarity=0.392 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHh
Q 026318 40 EEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLG 82 (240)
Q Consensus 40 Ee~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~ 82 (240)
|+++..-...+..|..-|.+|+++=-.-|++|...+.+|..|.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999998888774
No 13
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=89.81 E-value=12 Score=43.69 Aligned_cols=60 Identities=10% Similarity=0.177 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhccc
Q 026318 161 MRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERR 220 (240)
Q Consensus 161 l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaElanaekR 220 (240)
+++++..+..++..+.+...-=+..=.+.-+..+.++.++-...+|.++|..|+...+++
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~k 2071 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNK 2071 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555543333334444555666666666666777776666655444
No 14
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.65 E-value=29 Score=40.62 Aligned_cols=100 Identities=18% Similarity=0.267 Sum_probs=46.9
Q ss_pred hhhhhhhhhhhcc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHH
Q 026318 101 DRGLKLEVELRAS---EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ----LIAMRADIDGIRSELV 173 (240)
Q Consensus 101 ek~~KmEAelRa~---e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qq----ip~l~aEid~lrqElq 173 (240)
.+-..-|+||... +|+|++|.++..+..+-.+.-++...+++.+...|+.++.+-.. .-.|+.|++....=+.
T Consensus 1994 ~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~ 2073 (3245)
T 3vkg_A 1994 VQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVD 2073 (3245)
T ss_dssp HHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455566554 46777777777666555555555555555555555555444321 2233444444444444
Q ss_pred HHHHh---hhhhhhcchHHHHHHHHHHHhH
Q 026318 174 EARRA---FEFEKKANEEQIEQKQAMENNL 200 (240)
Q Consensus 174 r~Raa---~EyEKK~~~e~~Eq~qaMEknl 200 (240)
||-.- ..-||.--.+.+++.+.--+||
T Consensus 2074 rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2074 RSIALLDNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhccccHHHHHHHHHHHHHhc
Confidence 44332 3344444444444444433443
No 15
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=88.60 E-value=1.6 Score=33.19 Aligned_cols=44 Identities=20% Similarity=0.275 Sum_probs=34.2
Q ss_pred hhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 104 LKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (240)
Q Consensus 104 ~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqe 147 (240)
.-|++||++-..+..||-+++++.+.+.+--+|--.+-+.|..|
T Consensus 17 SALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e 60 (81)
T 1wt6_A 17 EALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAH 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999888876555555555555444
No 16
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=88.47 E-value=7.8 Score=30.51 Aligned_cols=110 Identities=20% Similarity=0.304 Sum_probs=51.7
Q ss_pred HhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 026318 94 AHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELV 173 (240)
Q Consensus 94 ~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElq 173 (240)
-+|+.+-+.+.+|+..+...+..|.|+..- ..+|...+.+|..++++-+.-+.-+..-...+-.-+.+++.--+++
T Consensus 13 ~E~~~~~eel~~lke~l~k~e~~r~ele~~---~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el- 88 (129)
T 2fxo_A 13 KEMASMKEEFTRLKEALEKSEARRKELEEK---MVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEM- 88 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-
Confidence 344444455555555554444444444332 2244444455555555444444444444444444444444333333
Q ss_pred HHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHH
Q 026318 174 EARRAFEFEKKANEEQIEQKQAMENNLISMAREIEK 209 (240)
Q Consensus 174 r~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEK 209 (240)
-.-+|-+...|.++....+-|+.++-.+-..++-
T Consensus 89 --~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 89 --NKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666554444444443
No 17
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=88.45 E-value=5 Score=39.58 Aligned_cols=92 Identities=9% Similarity=0.155 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHhhhhhhhcchHHHHHHHH
Q 026318 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADID-GIRSELVEARRAFEFEKKANEEQIEQKQA 195 (240)
Q Consensus 117 k~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid-~lrqElqr~Raa~EyEKK~~~e~~Eq~qa 195 (240)
+.=|..++..+..+...+.+--.-++.++..|..-+...++.-....|+- .|++-|+.+ |..=..++-+.++
T Consensus 63 tkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyL-------KekVdnQlsnIrv 135 (562)
T 3ghg_A 63 TNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVL-------KRKVIEKVQHIQL 135 (562)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 33344444444455555555555566666666544444444444444443 444444444 3334456688899
Q ss_pred HHHhHHHHHHHHHHHHHHHh
Q 026318 196 MENNLISMAREIEKLRAELL 215 (240)
Q Consensus 196 MEknlisMarEvEKLRaEla 215 (240)
+++||-....+|.||-.+|.
T Consensus 136 LQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 136 LQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988774
No 18
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=88.40 E-value=3.3 Score=33.09 Aligned_cols=83 Identities=23% Similarity=0.340 Sum_probs=47.0
Q ss_pred hhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 026318 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDG 167 (240)
Q Consensus 88 i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~ 167 (240)
...++|..|..|+- .++.+|.|+..+..|.|..+. .|.++|-.|..||.-.+...|+ ...|.+.
T Consensus 9 ~~d~rD~~Ie~Lkr----------eie~lk~ele~l~~E~q~~v~---ql~~~i~~Le~eL~e~r~~~q~---a~~e~e~ 72 (120)
T 3i00_A 9 NKDEKDHLIERLYR----------EISGLKAQLENMKTESQRVVL---QLKGHVSELEADLAEQQHLRQQ---AADDCEF 72 (120)
T ss_dssp -CCTHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred CCCcHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 45677766655442 234666777777666666554 5778888888888877755443 4566777
Q ss_pred HHHHHHHHH-----------Hhhhhhhhcc
Q 026318 168 IRSELVEAR-----------RAFEFEKKAN 186 (240)
Q Consensus 168 lrqElqr~R-----------aa~EyEKK~~ 186 (240)
|+.|+..++ ...|.|+|+.
T Consensus 73 Lr~e~~~l~~~~~~~~~~q~~~~e~E~kAq 102 (120)
T 3i00_A 73 LRAELDELRRQREDTEKAQRSLSEIERKAQ 102 (120)
T ss_dssp HHHHHHHHHTTCC-----------------
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 777777653 3467888763
No 19
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=87.71 E-value=8.4 Score=30.00 Aligned_cols=78 Identities=13% Similarity=0.216 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHH
Q 026318 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTK-DVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK 193 (240)
Q Consensus 116 lk~El~Q~r~e~q~L~a~RQELt~qvq~ltq-eL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~ 193 (240)
+-+.|-..+.....+...+++|..+|+.+.. -..+++..+.+|-.++.||..=..|++++..+++-=...+.....+.
T Consensus 13 ~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~ 91 (107)
T 2no2_A 13 VTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEF 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666777788888888888763 33467788899999999999999999998886665555555554444
No 20
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=86.76 E-value=14 Score=31.63 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHH
Q 026318 39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDE 77 (240)
Q Consensus 39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~E 77 (240)
||..|..-..=+..|-..|.+|...+..+|--+...+.|
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e 85 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566667777777777777766666666655
No 21
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=84.91 E-value=4.7 Score=30.36 Aligned_cols=69 Identities=19% Similarity=0.380 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHH
Q 026318 47 RREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE 126 (240)
Q Consensus 47 ~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e 126 (240)
-.|+..|+.+|..|-+|+-||- .++.+| +.++| .|-.|-..++.|
T Consensus 8 gkevEnLi~EN~eLl~TKNaLn----vvk~DL------------------------I~rvd-------ELt~E~e~l~~E 52 (77)
T 2w83_C 8 GREVENLILENTQLLETKNALN----IVKNDL------------------------IAKVD-------ELTCEKDVLQGE 52 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHH------------------------HHHHH-------HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH----HHHHHH------------------------HHHHH-------HHHhHHHHHHHH
Confidence 3578888888888888887762 222211 22222 445555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 127 VQKLNSSRQELTTQIKGLTKDVNR 150 (240)
Q Consensus 127 ~q~L~a~RQELt~qvq~ltqeL~r 150 (240)
+..+..+++-+..++..+.+||.|
T Consensus 53 l~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 53 LEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 667777777777777777777665
No 22
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=83.48 E-value=6.6 Score=33.05 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=24.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318 147 DVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (240)
Q Consensus 147 eL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (240)
.+..-..|-.+|.++..||..||+++...|..|.
T Consensus 104 L~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~ 137 (175)
T 3lay_A 104 LLTASSPDTAKINAVAKEMESLGQKLDEQRVKRD 137 (175)
T ss_dssp HHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445777888888888888888877766543
No 23
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=82.47 E-value=5.5 Score=27.74 Aligned_cols=41 Identities=20% Similarity=0.311 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 026318 127 VQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR 177 (240)
Q Consensus 127 ~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra 177 (240)
++.|.+-=|.|+.||..|+.|+. +++.++...+.|-.|+=.
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~----------al~~~v~~ak~eA~RAN~ 46 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDAN----------AARSDAQAAKDDAARANQ 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555544 445555566666665543
No 24
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=81.89 E-value=19 Score=29.06 Aligned_cols=83 Identities=12% Similarity=0.236 Sum_probs=48.9
Q ss_pred hHhHHHHHhh--hhhhhhhhhcc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHH
Q 026318 93 EAHTRELFDR--GLKLEVELRAS---EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE----NKQLIAMRA 163 (240)
Q Consensus 93 e~q~Rel~ek--~~KmEAelRa~---e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d----~qqip~l~a 163 (240)
|.+|+++-.+ ...+-.+--++ =.+=.|+.+++.++..|...-+++..++..+..||..++-. .+.+-.++.
T Consensus 38 d~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~ 117 (138)
T 3hnw_A 38 NNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKS 117 (138)
T ss_dssp HHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666643 66665554443 34667888888877777777777766666666666554432 233444444
Q ss_pred HHHHHHHHHHHH
Q 026318 164 DIDGIRSELVEA 175 (240)
Q Consensus 164 Eid~lrqElqr~ 175 (240)
+++.|+.++.++
T Consensus 118 ~~~~l~~~~~~l 129 (138)
T 3hnw_A 118 EINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 25
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=81.35 E-value=18 Score=28.44 Aligned_cols=85 Identities=15% Similarity=0.241 Sum_probs=33.9
Q ss_pred HHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 69 RELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDV 148 (240)
Q Consensus 69 qeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL 148 (240)
.++..++.||..++..|.++++|-+. +--....||.-|...+.- -..+++.+...-.+|-.+++.+..|+
T Consensus 31 ~~l~~~k~Ei~elrr~iq~L~~el~~----l~~~~~sLE~~l~e~e~~------~~~~l~~~q~~i~~lE~eL~~~r~em 100 (131)
T 3tnu_A 31 ELVQSGKSEISELRRTMQNLEIELQS----QLSMKASLENSLEETKGR------YCMQLAQIQEMIGSVEEQLAQLRCEM 100 (131)
T ss_dssp ----------CHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666766666666666555332 222334445444433221 11122223333334445555555555
Q ss_pred HHHHHhhhhhHHHHH
Q 026318 149 NRLEAENKQLIAMRA 163 (240)
Q Consensus 149 ~r~~~d~qqip~l~a 163 (240)
++..-|-|.+-.+|-
T Consensus 101 ~~ql~EYq~Ll~vKl 115 (131)
T 3tnu_A 101 EQQNQEYKILLDVKT 115 (131)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555554443
No 26
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=80.62 E-value=25 Score=29.70 Aligned_cols=64 Identities=23% Similarity=0.275 Sum_probs=37.2
Q ss_pred hhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026318 90 ADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRA-------EVQKLNSSRQELTTQIKGLTKDVNRLEAENK 156 (240)
Q Consensus 90 ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~-------e~q~L~a~RQELt~qvq~ltqeL~r~~~d~q 156 (240)
+--|.-+|+|-++...++..- +.+-.|+.++++ +-..-...-.||.++|++|..||.+...-..
T Consensus 44 ~~~E~~~rELq~~~~~L~~~k---~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~ 114 (168)
T 3o0z_A 44 SQLESLNRELQERNRILENSK---SQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLE 114 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888887777543 233344444444 3333333335777777777777776665333
No 27
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=80.40 E-value=9.1 Score=30.24 Aligned_cols=55 Identities=11% Similarity=0.143 Sum_probs=42.7
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 026318 110 LRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRAD 164 (240)
Q Consensus 110 lRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aE 164 (240)
|-++-++.+||.+.+.++..|...-++|...|..+.+|=.=.-+-+..|-.|-.+
T Consensus 3 ~~s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe 57 (106)
T 4e61_A 3 LGSLVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHT 57 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999999999999999998865555555554444433
No 28
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=80.31 E-value=19 Score=28.10 Aligned_cols=73 Identities=18% Similarity=0.357 Sum_probs=47.9
Q ss_pred hhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 026318 104 LKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFE 182 (240)
Q Consensus 104 ~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyE 182 (240)
++++.++. .++.++...+.--..-.+.|+.+-+.+.++.+++..+.-- --.|.+.+++|+.||--+|..+|-|
T Consensus 37 a~l~leld---n~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~---r~dLE~~iesL~eEl~FLKk~heeE 109 (119)
T 3ol1_A 37 ARVEVERD---NLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLA---RLDLERKVESLQEEIAFLKKLHEEE 109 (119)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34554443 5556666666666666778888888888888887643321 1336677788888887777666644
No 29
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=80.07 E-value=21 Score=28.39 Aligned_cols=94 Identities=18% Similarity=0.204 Sum_probs=64.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHH
Q 026318 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK 193 (240)
Q Consensus 114 e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~ 193 (240)
+.+-.++.|++-+..++...|++|....+.-+.|= ..||..|..-+.+-.+.|.-+|.+|.-=|. +--+|+
T Consensus 9 ~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~------k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~---~vq~qL 79 (112)
T 1x79_B 9 KKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDS------SHQISALVLRAQASEILLEELQQGLSQAKR---DVQEQM 79 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 56778889999999999999999999966655553 467888999999999999999998865444 445566
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhh
Q 026318 194 QAMENNLISMAREIEKLRAELLN 216 (240)
Q Consensus 194 qaMEknlisMarEvEKLRaElan 216 (240)
+..=..-=.+..|+.+|-+|=-+
T Consensus 80 ~~Lt~~Re~V~~eL~rLQ~eNd~ 102 (112)
T 1x79_B 80 AVLMQSREQVSEELVRLQKDNDS 102 (112)
T ss_dssp HHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHHHHHHHHHhhccc
Confidence 65555555677777777765433
No 30
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=79.62 E-value=20 Score=28.59 Aligned_cols=79 Identities=16% Similarity=0.298 Sum_probs=36.2
Q ss_pred HHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 67 LQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTK 146 (240)
Q Consensus 67 LrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltq 146 (240)
|+..|..|+.=|.-....|..++. .+.++++++--+.-+++-+.=-+.|-..=-+.|..+.++...|..
T Consensus 29 L~~~L~~AEeaL~~Kq~~idelk~-----------ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ 97 (110)
T 2v4h_A 29 LRQQLQQAEEALVAKQELIDKLKE-----------EAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQE 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHH
Confidence 444555555444444444444443 222333433334444444444444444444555555555555555
Q ss_pred HHHHHHHhhh
Q 026318 147 DVNRLEAENK 156 (240)
Q Consensus 147 eL~r~~~d~q 156 (240)
+|..++..++
T Consensus 98 ql~~Lq~q~~ 107 (110)
T 2v4h_A 98 QLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 31
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=79.48 E-value=17 Score=27.05 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=42.9
Q ss_pred hhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 026318 104 LKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR 177 (240)
Q Consensus 104 ~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra 177 (240)
.+.|.+++ .+..|+.++.....+....|++|..+...+.++-+.+... -+|.+..+..+...+.
T Consensus 10 ~~~eeEm~---~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q-------l~eaEe~~~~L~~~K~ 73 (89)
T 3bas_A 10 ARQEEEMK---EQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS-------MKQLEDKVEELLSKNY 73 (89)
T ss_dssp CHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred chhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHH
Confidence 44445554 3567777888888888888888888888888886666554 5566665555544433
No 32
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=79.43 E-value=5.9 Score=29.72 Aligned_cols=44 Identities=16% Similarity=0.270 Sum_probs=34.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026318 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENK 156 (240)
Q Consensus 113 ~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~q 156 (240)
.+.++.++.+++.++.+|...+-++.+++..+.+.+.-+..+..
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~ 48 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKG 48 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 34666788888888888888888899999988888887765433
No 33
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=79.28 E-value=21 Score=27.93 Aligned_cols=84 Identities=20% Similarity=0.338 Sum_probs=37.7
Q ss_pred HHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 69 RELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDV 148 (240)
Q Consensus 69 qeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL 148 (240)
.+|..++.||..++..|.++++|-+. +--....||.-|...+.- -..+++.+...=.+|-++++.+..|+
T Consensus 29 ~~l~~~k~Ei~elrr~iq~L~~el~~----l~~~~~~LE~~l~e~e~~------~~~~l~~~q~~i~~lE~eL~~~r~e~ 98 (129)
T 3tnu_B 29 DDLRNTKHEISEMNRMIQRLRAEIDN----VKKQCANLQNAIADAEQR------GELALKDARNKLAELEEALQKAKQDM 98 (129)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45666777777777777766655433 333344455544433221 11122222222233444555555555
Q ss_pred HHHHHhhhhhHHHH
Q 026318 149 NRLEAENKQLIAMR 162 (240)
Q Consensus 149 ~r~~~d~qqip~l~ 162 (240)
++..-|-|.+-.+|
T Consensus 99 ~~ql~EYq~LlnvK 112 (129)
T 3tnu_B 99 ARLLREYQELMNTK 112 (129)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555554444
No 34
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=79.19 E-value=2.1 Score=38.34 Aligned_cols=44 Identities=20% Similarity=0.403 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhh
Q 026318 40 EEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQ 83 (240)
Q Consensus 40 Ee~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~ 83 (240)
|+++..-..++..|-..|.+|+++.-.+++|+...+.||.+|..
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88999999999999999999999999999999999999999864
No 35
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=78.05 E-value=6.7 Score=31.28 Aligned_cols=54 Identities=17% Similarity=0.170 Sum_probs=34.2
Q ss_pred HHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHH
Q 026318 75 KDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLN 131 (240)
Q Consensus 75 q~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~ 131 (240)
+.|+.+|...+..++.|.-..|..|-.++..||+||--.. ...+++..|...|.
T Consensus 21 kreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r---~~~q~a~~e~e~Lr 74 (120)
T 3i00_A 21 YREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQ---HLRQQAADDCEFLR 74 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 4444455555566677888888899999999998875443 33344444444433
No 36
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=76.26 E-value=18 Score=28.70 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=46.3
Q ss_pred hhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHH
Q 026318 63 DNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRA 125 (240)
Q Consensus 63 thvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~ 125 (240)
.=+-|+.+|.....+-..|......-+.|.-.+|-+|++++..-|..|. .|+.-..|+..
T Consensus 14 ~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~---~Lqq~fsq~q~ 73 (112)
T 1x79_B 14 MLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLE---ELQQGLSQAKR 73 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 3366788888888888888888888999999999999999999997765 34444444444
No 37
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=76.09 E-value=12 Score=32.56 Aligned_cols=98 Identities=12% Similarity=0.082 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHH
Q 026318 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQA 195 (240)
Q Consensus 116 lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qa 195 (240)
+..++.++++++..+.+......+++....+++.|.+.-.++--.-..+++..+.++..+++.+ +.
T Consensus 68 ~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~~--------------~~ 133 (369)
T 4dk0_A 68 QINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTAKATLNNAKAEM--------------DV 133 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHHHHHHHHHHHHHH--------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHH--------------HH
Confidence 4555666666655555554455555555555566555444333333445555555555554432 22
Q ss_pred HHHhHHHHHHHHHHHHHHHhhhcccccccccc
Q 026318 196 MENNLISMAREIEKLRAELLNTERRACGLGKI 227 (240)
Q Consensus 196 MEknlisMarEvEKLRaElanaekRa~~~~~~ 227 (240)
.+.++-..-.+++.++..+.+..-+|-..|.+
T Consensus 134 ~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V 165 (369)
T 4dk0_A 134 VQENIKQAEIEVNTAETNLGYTKITSPIDGTV 165 (369)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHhhcCEEECCCCeEE
Confidence 33344444445666666666666666554544
No 38
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=75.88 E-value=3.4 Score=26.21 Aligned_cols=27 Identities=33% Similarity=0.398 Sum_probs=19.9
Q ss_pred hhHHHHHHHHhhHHHHHHHhhhhhhhh
Q 026318 63 DNTHLQRELTASKDEIHRLGQIIPKLR 89 (240)
Q Consensus 63 thvaLrqeL~aaq~El~~l~~~i~~i~ 89 (240)
...+|+||+++.+.|+-.|.--|+.++
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888888776666554
No 39
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=75.13 E-value=19 Score=31.88 Aligned_cols=128 Identities=19% Similarity=0.195 Sum_probs=59.0
Q ss_pred hhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 026318 92 KEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSE 171 (240)
Q Consensus 92 ~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqE 171 (240)
+--++|..+--+...|. ++.|.|.--..+..+|++|..-.. -+.++..|.+||.|+.+++. .--|.|.++..
T Consensus 88 ~~d~yR~~LK~IR~~E~---svqp~R~~R~~l~~~I~kLk~k~P-~s~kl~~LeqELvraEae~l---vaEAqL~n~kR- 159 (234)
T 3plt_A 88 KYDQYRVTLKSIRNIEA---SVQPSRDRKEKITDEIAHLKYKDP-QSTKIPVLEQELVRAEAESL---VAEAQLSNITR- 159 (234)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHhccCC-CCchHHHHHHHHHHHHHHhh---HHHHHHHHhHH-
Confidence 33445555555555553 223444444445555555443211 23455555555555555541 22244555554
Q ss_pred HHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccccccc--chhhhhhhhhh
Q 026318 172 LVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGLGKI--SFFLGALTWSI 238 (240)
Q Consensus 172 lqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaElanaekRa~~~~~~--g~~~~~~~~~~ 238 (240)
+..|.+|.|.=++..|.-| +++-+|+=--.|=.+| +.-+..+|.+ -|.++.-|=+|
T Consensus 160 -~~lKEa~~~~f~Al~E~aE-------K~~ila~~gk~Ll~ll---dd~pv~PG~~r~~Y~g~~~t~qi 217 (234)
T 3plt_A 160 -EKLKAAYSYMFDSLRELSE-------KFALIAGYGKALLELL---DDSPVTPGEARPAYDGYEASRQI 217 (234)
T ss_dssp -HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTTS---CCCCCCSSSCCCCCCCHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhc---CCCCCCCCCCCCCCCChhHHHHH
Confidence 3456666665555544443 3444444333333332 3334444444 55555444333
No 40
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=74.91 E-value=9.5 Score=27.13 Aligned_cols=36 Identities=14% Similarity=0.372 Sum_probs=30.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchH
Q 026318 153 AENKQLIAMRADIDGIRSELVEARRAFEFEKKANEE 188 (240)
Q Consensus 153 ~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e 188 (240)
|=+.-+=+|+.|+..|+||..+...++|-|.|+.-+
T Consensus 7 SlVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~ 42 (56)
T 2w6b_A 7 SLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKD 42 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334557899999999999999999999999998644
No 41
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=74.17 E-value=7.3 Score=27.11 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 122 QLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (240)
Q Consensus 122 Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~ 152 (240)
|+-.+|+.|..-=..|+.+|..+..|++-++
T Consensus 8 ~Lss~V~~L~~kVdqLssdV~al~~~v~~ak 38 (52)
T 1jcd_A 8 QASSDAQTANAKADQASNDANAARSDAQAAK 38 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444333
No 42
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=73.82 E-value=30 Score=27.08 Aligned_cols=89 Identities=19% Similarity=0.306 Sum_probs=72.2
Q ss_pred hhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 026318 103 GLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFE 182 (240)
Q Consensus 103 ~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyE 182 (240)
+.+-+.+++ .+..++.++.....+-...|++|..+...+.++.+.++..++.--..-++.+..+.-++.-+.-+|..
T Consensus 8 ~~~~e~E~~---~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~ 84 (129)
T 2fxo_A 8 SAEREKEMA---SMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAK 84 (129)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 345555655 47789999999999999999999999999999999999999999999999999999888888776655
Q ss_pred hhcchHHHHHHH
Q 026318 183 KKANEEQIEQKQ 194 (240)
Q Consensus 183 KK~~~e~~Eq~q 194 (240)
=+.-.+.++...
T Consensus 85 l~el~~rleeee 96 (129)
T 2fxo_A 85 VKEMNKRLEDEE 96 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555455555433
No 43
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=73.28 E-value=70 Score=31.22 Aligned_cols=49 Identities=24% Similarity=0.175 Sum_probs=40.9
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcc
Q 026318 65 THLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRAS 113 (240)
Q Consensus 65 vaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~ 113 (240)
..-+-+|++-|.||-|+...=.+++++-|.-+.+.--+...++||-.++
T Consensus 5 a~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeai 53 (497)
T 3iox_A 5 ADYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAI 53 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3456689999999999999999999999999998888888888865544
No 44
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=72.74 E-value=16 Score=27.03 Aligned_cols=43 Identities=23% Similarity=0.433 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 026318 123 LRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADI 165 (240)
Q Consensus 123 ~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEi 165 (240)
+..++..|.....||..++..+.+++.+...+-+.+..+++.+
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~l 44 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQF 44 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568889999999999999999999998776666655555543
No 45
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=71.61 E-value=82 Score=31.14 Aligned_cols=79 Identities=11% Similarity=0.196 Sum_probs=49.0
Q ss_pred hhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 026318 86 PKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADI 165 (240)
Q Consensus 86 ~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEi 165 (240)
.+-..+.+.+++.+++.. |..+.|..-.=......-.||--+++-|..++. ..+++|-+|+.=|
T Consensus 77 sKnsKdseqy~k~~~E~L-------------r~rq~q~~dNdNtynE~S~ELRRrIqyLKekVd---nQlsnIrvLQsnL 140 (562)
T 3ghg_A 77 QKNNKDSHSLTTNIMEIL-------------RGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVI---EKVQHIQLLQKNV 140 (562)
T ss_dssp HHHHHHHHHHHHHHHHTT-------------SSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HhhchhHHHHHHHHHHHH-------------HHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 445566777777777644 333434331111222333355566666665554 4448889999999
Q ss_pred HHHHHHHHHHHHhhh
Q 026318 166 DGIRSELVEARRAFE 180 (240)
Q Consensus 166 d~lrqElqr~Raa~E 180 (240)
++++.+|||+=.+|+
T Consensus 141 edq~~kIQRLEvDId 155 (562)
T 3ghg_A 141 RAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999877664
No 46
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=71.00 E-value=17 Score=26.27 Aligned_cols=43 Identities=28% Similarity=0.506 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026318 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158 (240)
Q Consensus 116 lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqi 158 (240)
+|.-|.-.-+-||.|..+-.-|+.++.-+.++++++++++-++
T Consensus 18 vK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 18 LKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 6677777778889999999999999988888888888887654
No 47
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=70.82 E-value=19 Score=28.16 Aligned_cols=46 Identities=28% Similarity=0.433 Sum_probs=31.6
Q ss_pred hHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 95 HTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKG 143 (240)
Q Consensus 95 q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ 143 (240)
+-|.++++..|-|.|+ +.++.++..++.......++-+||..+.+.
T Consensus 5 e~~~~~~~~~~~e~e~---~~l~~~~~el~~~l~~~~~~~~e~g~~~~~ 50 (125)
T 1joc_A 5 ERRALLERCLKGEGEI---EKLQTKVLELQRKLDNTTAAVQELGRENQS 50 (125)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 4577999999999874 567777777777666666555555544433
No 48
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=69.72 E-value=40 Score=26.78 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318 139 TQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (240)
Q Consensus 139 ~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (240)
.++..+.+++.+...+.-+||.|++.++--+.-...-|++=|
T Consensus 45 ~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadRE 86 (110)
T 2v4h_A 45 ELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHARE 86 (110)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHH
Confidence 445556667777788888899999988888777777776655
No 49
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=69.29 E-value=13 Score=31.93 Aligned_cols=62 Identities=15% Similarity=0.236 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 026318 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR 177 (240)
Q Consensus 116 lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra 177 (240)
+..++.++.+++..+.+.-....+++....+++.|.+.-.++--.-+.++|..+.++..+++
T Consensus 67 ~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~~~a 128 (341)
T 3fpp_A 67 AENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQA 128 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHH
Confidence 44555565555555555444455555555555555554444333344555555555544443
No 50
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=68.98 E-value=17 Score=29.35 Aligned_cols=16 Identities=31% Similarity=0.490 Sum_probs=11.3
Q ss_pred HHHHHHhhHHHHHHHh
Q 026318 67 LQRELTASKDEIHRLG 82 (240)
Q Consensus 67 LrqeL~aaq~El~~l~ 82 (240)
|+++|..||+-|+..-
T Consensus 30 Lq~qLTqAQe~l~~~e 45 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVE 45 (121)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777888877666654
No 51
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=68.96 E-value=27 Score=29.27 Aligned_cols=21 Identities=24% Similarity=0.126 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 026318 158 LIAMRADIDGIRSELVEARRA 178 (240)
Q Consensus 158 ip~l~aEid~lrqElqr~Raa 178 (240)
+..++.++...++|++.+-++
T Consensus 87 ~~~Lr~ql~akr~EL~aL~~a 107 (175)
T 3lay_A 87 TSALRQQLISKRYEYNALLTA 107 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 445677777777777776654
No 52
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=68.43 E-value=50 Score=31.30 Aligned_cols=42 Identities=14% Similarity=0.321 Sum_probs=32.6
Q ss_pred HHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 026318 173 VEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAEL 214 (240)
Q Consensus 173 qr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaEl 214 (240)
..+|.-|+|=|+.-.+++.+++++++|+...-.+|.||--.|
T Consensus 116 ~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 116 EDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667677777788888888888888888888888777
No 53
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=68.26 E-value=30 Score=26.26 Aligned_cols=80 Identities=13% Similarity=0.140 Sum_probs=40.2
Q ss_pred hhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 026318 92 KEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSE 171 (240)
Q Consensus 92 ~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqE 171 (240)
+|.++-.|=-+...||..|+..+. +.-.++..+...-..|.++++.+..|+++...+-|.+..+|.-+| .|
T Consensus 10 ~~~~~~~Lq~~~~~LE~~l~e~E~------~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le---~E 80 (95)
T 3mov_A 10 RENLYFQGQKESRACLERIQELED------LLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALD---ME 80 (95)
T ss_dssp --------CCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 344555555556666666665544 222344444444455666666677777766666666666665444 34
Q ss_pred HHHHHHhhh
Q 026318 172 LVEARRAFE 180 (240)
Q Consensus 172 lqr~Raa~E 180 (240)
|---|.-+|
T Consensus 81 IatYrkLLE 89 (95)
T 3mov_A 81 ISAYRKLLE 89 (95)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHc
Confidence 444444443
No 54
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=68.05 E-value=54 Score=27.64 Aligned_cols=113 Identities=15% Similarity=0.145 Sum_probs=78.7
Q ss_pred hhhhhhhhHhHHHHHhhhhhhhhhhhcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 026318 86 PKLRADKEAHTRELFDRGLKLEVELRAS-EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRAD 164 (240)
Q Consensus 86 ~~i~ae~e~q~Rel~ek~~KmEAelRa~-e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aE 164 (240)
..+++|.|. ..|..|.-+|++.. -.+-.-+.-+..-+..|...|-.|-.++..|.-.|..-+.+-.+...+.+|
T Consensus 20 ~kLk~EsE~-----~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~e 94 (168)
T 3o0z_A 20 DLLRTESDT-----AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGD 94 (168)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777775 35678888888743 444444444455677888899999999988888888888888877776664
Q ss_pred ----HHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHH
Q 026318 165 ----IDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISM 203 (240)
Q Consensus 165 ----id~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisM 203 (240)
|.+|+.|+.+.+..+.-=.-.+-.+.|-.-.+||---+|
T Consensus 95 lq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~ 137 (168)
T 3o0z_A 95 LQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNL 137 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567888998888766554444555555566666644333
No 55
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=67.59 E-value=21 Score=27.87 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=11.7
Q ss_pred HhHHHHHHHHHHHHHHHhhhcc
Q 026318 198 NNLISMAREIEKLRAELLNTER 219 (240)
Q Consensus 198 knlisMarEvEKLRaElanaek 219 (240)
+-+-.+-.|+|+||.-+...+.
T Consensus 75 ~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 75 EDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3344455666666666655543
No 56
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=66.72 E-value=17 Score=27.46 Aligned_cols=54 Identities=15% Similarity=0.263 Sum_probs=37.1
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 026318 107 EVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIA 160 (240)
Q Consensus 107 EAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~ 160 (240)
+|==|+.+.=|.--.+....+..|...-..|..+|+.|++|+..+..-..++|.
T Consensus 25 ~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 25 IAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 344455555556666666777888888888888888888888888877777775
No 57
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=66.20 E-value=53 Score=27.28 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=19.2
Q ss_pred HhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHH
Q 026318 100 FDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQEL 137 (240)
Q Consensus 100 ~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQEL 137 (240)
|++..-||-+|- ..|.++...+.-++.|...|.++
T Consensus 12 in~qs~LeD~L~---~~R~el~~~~~ri~~lE~~r~~~ 46 (154)
T 2ocy_A 12 VDKQSHLEEQLN---KSLKTIASQKAAIENYNQLKEDY 46 (154)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHhhccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555443 34556665566666666555543
No 58
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=65.59 E-value=7.2 Score=30.60 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 026318 137 LTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELV 173 (240)
Q Consensus 137 Lt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElq 173 (240)
|+++|+.|.+||.....=...+-.|+.+|+.+++.+.
T Consensus 4 l~~~~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~l~ 40 (182)
T 3kqg_A 4 LNAQIPELKSDLEKASALNTKIRALQGSLENMSKLLK 40 (182)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666655555555555555555555544
No 59
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=65.51 E-value=11 Score=31.29 Aligned_cols=69 Identities=22% Similarity=0.237 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHH
Q 026318 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIE 191 (240)
Q Consensus 117 k~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~E 191 (240)
+.++.-.|...+++.+.-+.|++++..++.|++++..++|-.-+ -..+|+.+|.-.|.+- |+..+++.|
T Consensus 72 ~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseA---SRqgLrRDLeASReAK---KqlEadl~~ 140 (146)
T 2xnx_M 72 TREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDA---SRQSLRRDLDASREAK---KQVEKDLLE 140 (146)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC---------------------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 44444444444444444455555667777888888777775444 4478888888888774 344444444
No 60
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=64.91 E-value=17 Score=26.88 Aligned_cols=53 Identities=15% Similarity=0.268 Sum_probs=36.1
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 026318 107 EVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLI 159 (240)
Q Consensus 107 EAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip 159 (240)
+|==|+.+.=|.--......+..|...-..|..+|+.|++|+..++.=.-|+|
T Consensus 25 ~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q~p 77 (78)
T 1gu4_A 25 IAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 34445555556666666677778888888888888888888888777777766
No 61
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=64.81 E-value=63 Score=30.44 Aligned_cols=40 Identities=13% Similarity=0.152 Sum_probs=29.2
Q ss_pred HHHhhhhh-hhhhhhcchhhHHHHHHHHHHHHHHHHHHHHH
Q 026318 98 ELFDRGLK-LEVELRASEPVRAEVVQLRAEVQKLNSSRQEL 137 (240)
Q Consensus 98 el~ek~~K-mEAelRa~e~lk~El~Q~r~e~q~L~a~RQEL 137 (240)
+.+.|-.+ +.-+|+-.|.+-.||.++.++++.|...-|+.
T Consensus 27 d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 27 DFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444 56677777888888888888888888887777
No 62
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=64.22 E-value=31 Score=27.15 Aligned_cols=31 Identities=29% Similarity=0.488 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026318 126 EVQKLNSSRQELTTQIKGLTKDVNRLEAENK 156 (240)
Q Consensus 126 e~q~L~a~RQELt~qvq~ltqeL~r~~~d~q 156 (240)
|-..|....+...++|+.|..++.|+..+||
T Consensus 52 e~~rlr~~~~~~~~~v~eLe~everL~~ENq 82 (104)
T 3s9g_A 52 ENNRLRLESKRLDARVRELELELDRLRAENL 82 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence 3333333344444555555555444444443
No 63
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=63.71 E-value=35 Score=26.46 Aligned_cols=77 Identities=17% Similarity=0.301 Sum_probs=33.9
Q ss_pred HHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 67 LQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTK 146 (240)
Q Consensus 67 LrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltq 146 (240)
|...|..|..=|......|..+ -+.+.++++++--++-+++-+.--+.|-+.=-+.|..+.++.+.|..
T Consensus 7 L~~~L~~aEeaL~~kq~~id~l-----------ke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ 75 (94)
T 3jsv_C 7 LRQQLQQAEEALVAKQELIDKL-----------KEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQE 75 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4455555554444443444433 33444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHh
Q 026318 147 DVNRLEAE 154 (240)
Q Consensus 147 eL~r~~~d 154 (240)
+|..++..
T Consensus 76 ql~~lq~q 83 (94)
T 3jsv_C 76 QLEQLQRE 83 (94)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 44443333
No 64
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=63.40 E-value=51 Score=25.65 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=30.3
Q ss_pred HhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 81 LGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDV 148 (240)
Q Consensus 81 l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL 148 (240)
|-..+.++..-.+.++..+=.++..+| .+|.+++.|.......-|+|..==-.|..|+
T Consensus 62 LE~~l~e~e~~~~~~l~~~q~~i~~lE----------~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EI 119 (129)
T 3tnu_B 62 LQNAIADAEQRGELALKDARNKLAELE----------EALQKAKQDMARLLREYQELMNTKLALDVEI 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555 4555666666555555555554333344443
No 65
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=63.23 E-value=28 Score=25.74 Aligned_cols=57 Identities=21% Similarity=0.336 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 026318 119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRA 178 (240)
Q Consensus 119 El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa 178 (240)
|+.-+..+|+||.+.=-+...++..|..| +-.+-++||.+-.+.-....++..+|..
T Consensus 4 di~eLkkevkKL~~~A~q~kmdLHDLaEd---LP~~w~~i~~vA~~tyda~~~l~~ak~~ 60 (71)
T 2js5_A 4 GAEELKAKLKKLNAQATALKMDLHDLAED---LPTGWNRIMEVAEKTYEAYRQLDEFRKS 60 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTTSGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHhcc---chhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778889998888999999999998 6688899999888887777777776654
No 66
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=62.72 E-value=18 Score=25.19 Aligned_cols=19 Identities=11% Similarity=0.184 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 026318 161 MRADIDGIRSELVEARRAF 179 (240)
Q Consensus 161 l~aEid~lrqElqr~Raa~ 179 (240)
|+.+|+.|+.|+..++..+
T Consensus 42 L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 42 LQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455556666665555443
No 67
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=61.63 E-value=93 Score=29.86 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 026318 157 QLIAMRADIDGIRSELVEARRAF 179 (240)
Q Consensus 157 qip~l~aEid~lrqElqr~Raa~ 179 (240)
+|-.|...++.++..|+.+-..+
T Consensus 169 ~i~~L~~~~~~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 169 SLRVLRAVIDSLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666655544
No 68
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=60.78 E-value=58 Score=25.44 Aligned_cols=57 Identities=14% Similarity=0.175 Sum_probs=28.6
Q ss_pred hhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 83 QIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (240)
Q Consensus 83 ~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~ 149 (240)
..|.++..-.+.++..+=.++..+| .+|.+++.|+......-|+|..==-.|..|++
T Consensus 66 ~~l~e~e~~~~~~l~~~q~~i~~lE----------~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIa 122 (131)
T 3tnu_A 66 NSLEETKGRYCMQLAQIQEMIGSVE----------EQLAQLRCEMEQQNQEYKILLDVKTRLEQEIA 122 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555 45556666665555555555543334444433
No 69
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=60.45 E-value=18 Score=26.12 Aligned_cols=43 Identities=14% Similarity=0.395 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHH
Q 026318 157 QLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMARE 206 (240)
Q Consensus 157 qip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarE 206 (240)
-+=+|+.|+..|++|.+....++|+|.++ ++.+|+++-.+.+.
T Consensus 8 tVYalkDev~eLk~e~k~~k~~le~eqra-------Rk~LE~~vrk~~k~ 50 (61)
T 3l4f_A 8 TVYALKDEVQELRQDNKKMKKSLEEEQRA-------RKDLEKLVRKVLKN 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhh
Confidence 46689999999999999999999999875 56778877666654
No 70
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=59.59 E-value=65 Score=26.55 Aligned_cols=80 Identities=14% Similarity=0.179 Sum_probs=37.1
Q ss_pred hhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHH
Q 026318 114 EPVRAEVVQ-LRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQ 192 (240)
Q Consensus 114 e~lk~El~Q-~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq 192 (240)
+..|.++.+ +..-+..+....+.|--+.+.+..|..+.... ..-|...+-++++++-+..-|+-+.-=|+--..+++|
T Consensus 24 e~~Ke~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~-~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~q 102 (150)
T 4dci_A 24 PTWKEEAEREISNGIANADQQLAQLEQEGQTVVDQVRRQSAN-PLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQ 102 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666653 33333344444444444444444443321111 1126666666666666555555554444444444444
Q ss_pred HH
Q 026318 193 KQ 194 (240)
Q Consensus 193 ~q 194 (240)
.+
T Consensus 103 v~ 104 (150)
T 4dci_A 103 VR 104 (150)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 71
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=59.42 E-value=29 Score=26.19 Aligned_cols=58 Identities=22% Similarity=0.375 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 026318 119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (240)
Q Consensus 119 El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (240)
|+.-+..+|+||.+.=-+...+++.|..| +-.+-++||.+-.+.-....++..+|..+
T Consensus 16 di~eLkkevkKL~~~A~q~kmdLHDLaEd---LP~~w~~i~~vA~~tyda~~~l~~ak~~L 73 (81)
T 3csx_A 16 AVADLKKKVRKLNSKAGQMKMDLHDLAEG---LPTDYENLVETAEKTYEIFRELDQLKKKL 73 (81)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHH---TTTTGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677888888888999999999999 67888999999888888877777777654
No 72
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=58.88 E-value=1e+02 Score=29.49 Aligned_cols=24 Identities=25% Similarity=0.554 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 121 VQLRAEVQKLNSSRQELTTQIKGL 144 (240)
Q Consensus 121 ~Q~r~e~q~L~a~RQELt~qvq~l 144 (240)
.++..+++.|.+.|..++.+|..+
T Consensus 80 r~~~~~~~~l~~~rn~~sk~i~~~ 103 (501)
T 1wle_A 80 RQLREQIRSLEEEKEAVTEAVRAL 103 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666666666543
No 73
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=57.93 E-value=52 Score=24.02 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHH
Q 026318 140 QIKGLTKDVNRLEAENKQLIAMR 162 (240)
Q Consensus 140 qvq~ltqeL~r~~~d~qqip~l~ 162 (240)
+++.+..|+++...|-|.+-.+|
T Consensus 41 eL~~~r~e~~~q~~EYq~LlnvK 63 (84)
T 1gk4_A 41 EIQNMKEEMARHLREYQDLLNVK 63 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 74
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=57.80 E-value=33 Score=24.02 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (240)
Q Consensus 117 k~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~ 149 (240)
+.+...+..+++.|.....+|..+|..|..|+.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555555544443
No 75
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=57.75 E-value=14 Score=25.43 Aligned_cols=25 Identities=12% Similarity=0.345 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 115 PVRAEVVQLRAEVQKLNSSRQELTT 139 (240)
Q Consensus 115 ~lk~El~Q~r~e~q~L~a~RQELt~ 139 (240)
.||.|+..++..+..|...-+||.+
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333333333
No 76
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=57.49 E-value=60 Score=24.54 Aligned_cols=40 Identities=23% Similarity=0.332 Sum_probs=27.2
Q ss_pred HhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026318 100 FDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN 155 (240)
Q Consensus 100 ~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~ 155 (240)
-+=+.+||-|+|+..+ +.|..+.++|....+||.+++.+.
T Consensus 62 ~eLl~qMelE~r~~p~----------------s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 62 NETLAEMEEELRYAPL----------------TFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHTSCH----------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCH----------------HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445567776666632 447778888888888888776664
No 77
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=57.45 E-value=64 Score=24.92 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=17.3
Q ss_pred hhhhhhhhhhcchhhHHHHHHHHHHHHHHHH
Q 026318 102 RGLKLEVELRASEPVRAEVVQLRAEVQKLNS 132 (240)
Q Consensus 102 k~~KmEAelRa~e~lk~El~Q~r~e~q~L~a 132 (240)
-..|++...-.++.++.||..-..|++.|..
T Consensus 45 ~~~k~~eq~~~le~lk~eL~~~~~el~~lq~ 75 (107)
T 2no2_A 45 GQRKTQEQLEVLESLKQELATSQRELQVLQG 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556666666665555555433
No 78
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=56.91 E-value=61 Score=24.45 Aligned_cols=87 Identities=15% Similarity=0.240 Sum_probs=47.3
Q ss_pred CccchHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcch
Q 026318 35 HPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASE 114 (240)
Q Consensus 35 ~p~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e 114 (240)
...-.|+.+..-..+|.+-+..=..+.. ..=++-+..+ |..+-+.-+=+.+||-|+|++.
T Consensus 6 lFe~YE~df~~l~~~i~~kl~~i~~~~g--eerk~~i~~i------------------e~~l~EA~ell~qMelE~r~~p 65 (102)
T 1vcs_A 6 SGEGYEQDFAVLTAEITSKIARVPRLPP--DEKKQMVANV------------------EKQLEEARELLEQMDLEVREIP 65 (102)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHGGGSCT--TTHHHHHHHH------------------HHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCc--HHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHhCC
Confidence 4456788888888888877764221100 0001111111 2223334445667888888875
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026318 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ 157 (240)
Q Consensus 115 ~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qq 157 (240)
+ +.|..+.++|....+||.+++.+.++
T Consensus 66 ~----------------~~R~~~~~klr~Yk~dL~~lk~elk~ 92 (102)
T 1vcs_A 66 P----------------QSRGMYSNRMRSYKQEMGKLETDFKR 92 (102)
T ss_dssp T----------------TTHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred H----------------HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 33556666666666666655555544
No 79
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=56.90 E-value=79 Score=25.81 Aligned_cols=105 Identities=10% Similarity=0.222 Sum_probs=53.1
Q ss_pred HHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhh---------hHhHHHHHhhhhhhhhhhhcchhhHHHHHH
Q 026318 52 RIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADK---------EAHTRELFDRGLKLEVELRASEPVRAEVVQ 122 (240)
Q Consensus 52 rLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~---------e~q~Rel~ek~~KmEAelRa~e~lk~El~Q 122 (240)
++|.|=+-=|.+=.+.||.++.-=-|++-.+ .+.+|+-.. |.-..-|-+-...|++|+.....
T Consensus 29 k~L~~le~sassDa~vrq~Ia~LP~eVsd~s-~l~klkDk~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~------- 100 (152)
T 4fla_A 29 KALQDLENAASGDATVRQKIASLPQEVQDVS-LLEKITDKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQ------- 100 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCGGGTCGG-GGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHhhccccchHHHHHHHHcCCccccCHH-HHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 3333334447777888999888766666554 344444332 22233344444445555444332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 026318 123 LRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDG 167 (240)
Q Consensus 123 ~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~ 167 (240)
=++.|...-+....++....+.|.-.+.-..++-.++.|++.
T Consensus 101 ---L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~ 142 (152)
T 4fla_A 101 ---LARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKS 142 (152)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444444444444444444554445555555555555544
No 80
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=56.57 E-value=39 Score=23.13 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (240)
Q Consensus 119 El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~ 149 (240)
....+..++..|...-.+|..+|+.|..++.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 81
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=55.81 E-value=1.2e+02 Score=27.42 Aligned_cols=109 Identities=15% Similarity=0.186 Sum_probs=0.0
Q ss_pred hhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHH
Q 026318 58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQEL 137 (240)
Q Consensus 58 qRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQEL 137 (240)
+.+...-....+-|..++.++..+ +.+.+++.|.. +...-|. |-.+.+++-+.|+++ +-.+.---.
T Consensus 362 ~~vl~G~~t~eeal~~~~~~i~~~---l~~~~~~~e~~-----~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~ 427 (471)
T 3mq9_A 362 INAASGRQTVDEALKDAQTRITAA---RDGLRAVMEAR-----NVTHLLQ---QELTEAQKGFQDVEA---QAATANHTV 427 (471)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHH---HHHHHHHHHHH-----HHHHHHH---HHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHH---HHhhHHHHHhh-----hHHHHHH---HHHHHHhhhHHHHHH---HhhhcchhH
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 026318 138 TTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEK 183 (240)
Q Consensus 138 t~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEK 183 (240)
++--.+|.++..... +.|-.+.+||-.+-++|+.+|+.++.-|
T Consensus 428 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 428 MALMASLDAEKAQGQ---KKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 82
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=54.80 E-value=83 Score=25.38 Aligned_cols=9 Identities=33% Similarity=0.172 Sum_probs=4.1
Q ss_pred hhHHHHHHH
Q 026318 115 PVRAEVVQL 123 (240)
Q Consensus 115 ~lk~El~Q~ 123 (240)
+|+.|..|.
T Consensus 61 SL~~ekaq~ 69 (121)
T 3mq7_A 61 SLDAEKAQG 69 (121)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 83
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=54.67 E-value=64 Score=24.08 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=31.0
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHhhhhhH
Q 026318 120 VVQLRAEVQKL---NSSRQELTTQIKGLTKDVNR-LEAENKQLI 159 (240)
Q Consensus 120 l~Q~r~e~q~L---~a~RQELt~qvq~ltqeL~r-~~~d~qqip 159 (240)
|.|...|++.+ .+.|..+.++|....+||.+ ++.+++++-
T Consensus 50 l~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 50 LDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55666777777 25688899999999999988 888887764
No 84
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=54.05 E-value=40 Score=24.95 Aligned_cols=39 Identities=3% Similarity=0.072 Sum_probs=17.8
Q ss_pred HHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhh
Q 026318 50 MHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKL 88 (240)
Q Consensus 50 iqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i 88 (240)
+|.++..=++|-.....|.+.+...+.+++.+..++..+
T Consensus 8 ~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL 46 (117)
T 2zqm_A 8 VQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEI 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444433
No 85
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=53.86 E-value=84 Score=25.18 Aligned_cols=94 Identities=16% Similarity=0.222 Sum_probs=54.1
Q ss_pred HHHHHHHHHh--hhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHH
Q 026318 47 RREMHRIISE--NRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLR 124 (240)
Q Consensus 47 ~~EiqrLl~d--NqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r 124 (240)
..-|..|... |..+..+..+.==-|..+ +|+-.+...+..+..+-+..-. ....+|.|+..++
T Consensus 38 d~km~ei~~~~~~~~l~~~r~aVLaALNia-dEl~k~~~~~~~L~~~l~~~~k--------------E~~~lK~el~~~~ 102 (138)
T 3hnw_A 38 NNKITEFNKEESYRRMSAELRTDMMYLNIA-DDYFKAKKMADSLSLDIENKDK--------------EIYDLKHELIAAQ 102 (138)
T ss_dssp HHHHHHHTTCHHHHTSCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Confidence 3445566644 777777666653333332 3444333333333322222222 2236788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026318 125 AEVQKLNSSRQELTTQIKGLTKDVNRLEAEN 155 (240)
Q Consensus 125 ~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~ 155 (240)
..+..+...-.+|..++..|..++.++.+++
T Consensus 103 ~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 103 IKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777777777777777777777777765543
No 86
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=53.61 E-value=69 Score=24.08 Aligned_cols=57 Identities=26% Similarity=0.344 Sum_probs=34.3
Q ss_pred hHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 93 EAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (240)
Q Consensus 93 e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~ 152 (240)
|..|...+|.+..|.-|+ +.+|.+-..+-.+++.+.+.|..|..+.+.+.+|.+--+
T Consensus 12 E~KIq~avdtI~lLqmEi---eELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq 68 (81)
T 2jee_A 12 EAKVQQAIDTITLLQMEI---EELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 344555666655544443 356666666666666666666667777777766655433
No 87
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=53.43 E-value=69 Score=24.03 Aligned_cols=53 Identities=17% Similarity=0.324 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 026318 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEAR 176 (240)
Q Consensus 114 e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~R 176 (240)
+.+-.|=.|+..---.|..++.+|-++|..||-|-. +|+.|++.+++=..++.
T Consensus 12 EnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e----------~l~~El~s~~~~~~r~~ 64 (77)
T 2w83_C 12 ENLILENTQLLETKNALNIVKNDLIAKVDELTCEKD----------VLQGELEAVKQAKLKLE 64 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----------HHHHHHHHHHHHHHHHH
Confidence 344444444544455677888899999999888844 56666666665554443
No 88
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=52.68 E-value=1e+02 Score=25.70 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=17.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQI 141 (240)
Q Consensus 112 a~e~lk~El~Q~r~e~q~L~a~RQELt~qv 141 (240)
.++.+++|+.-++.+...+....+.|..+-
T Consensus 97 ~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 97 NTERLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677777776666555555444444433
No 89
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=52.66 E-value=35 Score=23.41 Aligned_cols=18 Identities=11% Similarity=0.468 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026318 160 AMRADIDGIRSELVEARR 177 (240)
Q Consensus 160 ~l~aEid~lrqElqr~Ra 177 (240)
.|.++|..|+.|+..++.
T Consensus 40 ~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 40 QLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566666666665554
No 90
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=51.81 E-value=70 Score=23.62 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=29.4
Q ss_pred hhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 91 DKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQ 140 (240)
Q Consensus 91 e~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~q 140 (240)
..|-+|+.+-+.+.++...+-..+..+.|+..- ..+|...+.+|..+
T Consensus 11 ~~eeEm~~~eeel~~lke~l~k~e~~rkele~~---~~~l~~ek~~L~~q 57 (89)
T 3bas_A 11 RQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQ---NVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 344555566666666666666666667766653 33666666666666
No 91
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=51.12 E-value=31 Score=23.72 Aligned_cols=28 Identities=18% Similarity=0.368 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 126 EVQKLNSSRQELTTQIKGLTKDVNRLEA 153 (240)
Q Consensus 126 e~q~L~a~RQELt~qvq~ltqeL~r~~~ 153 (240)
|+..|....++|-.++..|+++++..++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444333
No 92
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=50.81 E-value=84 Score=24.28 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026318 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE 154 (240)
Q Consensus 115 ~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d 154 (240)
..+.+-.-=|++=.++...+++|..++..+.+++.++.++
T Consensus 51 IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~~~ 90 (94)
T 3jsv_C 51 IYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLKVG 90 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555666666666666666666655555543
No 93
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=50.74 E-value=23 Score=25.76 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=10.6
Q ss_pred hhhhhhhHhHHHHHhhhhhhh
Q 026318 87 KLRADKEAHTRELFDRGLKLE 107 (240)
Q Consensus 87 ~i~ae~e~q~Rel~ek~~KmE 107 (240)
.++.=++.+|.+|=+++..+|
T Consensus 22 afReRK~~~i~~LE~~v~~le 42 (70)
T 1gd2_E 22 AFRKRKEDHLKALETQVVTLK 42 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555554444
No 94
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=50.40 E-value=51 Score=22.85 Aligned_cols=34 Identities=29% Similarity=0.427 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRL 151 (240)
Q Consensus 118 ~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~ 151 (240)
..+..+..++..|...-.+|..+|..|..++..+
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555443
No 95
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=49.93 E-value=92 Score=24.49 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHh
Q 026318 156 KQLIAMRADIDGIRSELVEARRA 178 (240)
Q Consensus 156 qqip~l~aEid~lrqElqr~Raa 178 (240)
.+|-+|.+|++.|+-|-|+++.-
T Consensus 65 ~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 57888899999999998888753
No 96
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=49.13 E-value=21 Score=27.64 Aligned_cols=36 Identities=17% Similarity=0.439 Sum_probs=28.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 026318 146 KDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEF 181 (240)
Q Consensus 146 qeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey 181 (240)
.|.+|-.--+-++.-|.+||+.+..++.-.|+.|+-
T Consensus 46 DeFAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~~ 81 (93)
T 3sjb_C 46 DNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQA 81 (93)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556677888999999999999999999863
No 97
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=48.80 E-value=35 Score=29.42 Aligned_cols=49 Identities=12% Similarity=0.186 Sum_probs=26.6
Q ss_pred cchHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhh
Q 026318 37 MTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQII 85 (240)
Q Consensus 37 ~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i 85 (240)
..++++|..-|-.|+.|..+|.+|...--..-+|+.+.+.+|+.+...+
T Consensus 9 ~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 9 NSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4679999999999999999999877666655555555555555554444
No 98
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=48.80 E-value=75 Score=23.64 Aligned_cols=58 Identities=26% Similarity=0.410 Sum_probs=38.2
Q ss_pred HHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHH
Q 026318 53 IISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLN 131 (240)
Q Consensus 53 Ll~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~ 131 (240)
+..+|-.+-.+-.+||.+|..-.+||++|...+. =|+ +..|.+.+|+.-+..|.--|.
T Consensus 9 ~~~~~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~--------------lk~-------kd~ErLNDEiislNIENNlL~ 66 (75)
T 3a7o_A 9 IVSHDDALLNTLAILQKELKSKEQEIRRLKEVIA--------------LKN-------KNTERLNDELISGTIENNVLQ 66 (75)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------Hhc-------ccHHHhhHHHHHhHHHHHHHH
Confidence 4567777777888999999988888888876654 112 223467777777766654443
No 99
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=48.74 E-value=31 Score=26.44 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=14.1
Q ss_pred HHhHHHHHHHHHHHHHHHhh
Q 026318 197 ENNLISMAREIEKLRAELLN 216 (240)
Q Consensus 197 EknlisMarEvEKLRaElan 216 (240)
+.-|..++..|++|++++-+
T Consensus 61 ~~~L~e~~~kid~L~~el~K 80 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQK 80 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667777788888887644
No 100
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=48.47 E-value=76 Score=23.11 Aligned_cols=61 Identities=16% Similarity=0.204 Sum_probs=32.8
Q ss_pred HhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 81 LGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGL 144 (240)
Q Consensus 81 l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~l 144 (240)
|...+.++..-.+.++..+=.++..+|++|. .+|.|+.+.-.|-|.|-.++--|-.+|...
T Consensus 13 LE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~---~~r~e~~~q~~EYq~LlnvK~~Ld~EIatY 73 (84)
T 1gk4_A 13 LERQMREMEENFAVEAANYQDTIGRLQDEIQ---NMKEEMARHLREYQDLLNVKMALDIEIATY 73 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3344555555556666666677777775554 244455444445555555554444444443
No 101
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=48.39 E-value=1.4e+02 Score=26.23 Aligned_cols=118 Identities=14% Similarity=0.138 Sum_probs=73.7
Q ss_pred HHHHhhhhhhhhhhhcc-hhhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------
Q 026318 97 RELFDRGLKLEVELRAS-EPVRAEVV-----QLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN--------------- 155 (240)
Q Consensus 97 Rel~ek~~KmEAelRa~-e~lk~El~-----Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~--------------- 155 (240)
-.+.+.-.++|+.++.. ..+-.||. .+..|.+.+....++-..+......||.+..++.
T Consensus 83 ~~i~~~hr~ie~~l~~~~k~~~~eli~pLe~k~e~d~k~~~~~~K~~~~~~k~~r~elkk~~~~~~k~qkK~rk~~~~gk 162 (253)
T 2d1l_A 83 TRMCMRHRSIEAKLRQFSSALIDCLINPLQEQMEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQGR 162 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccccCC
Confidence 34555555666666554 23334432 2345555566555555555555555554444332
Q ss_pred -----------hhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 026318 156 -----------KQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLN 216 (240)
Q Consensus 156 -----------qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaElan 216 (240)
+-|.....|++...+ +-.|.|+--|++-|--.++..+..=+.=++|..|+..|+.=+.+
T Consensus 163 ~~~~~~l~~a~q~v~~~~~~le~~~~--~~~r~AL~EERrRycflv~~l~pv~~~e~~~~~e~~~l~~~l~~ 232 (253)
T 2d1l_A 163 GDIQPQLDSALQDVNDKYLLLEETEK--QAVRKALIEERGRFCTFISMLRPVIEEEISMLGEITHLQTISED 232 (253)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHH
Confidence 223333344444433 55789999999999999999999999999999999999885543
No 102
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=47.87 E-value=20 Score=22.82 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=15.4
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhhh
Q 026318 65 THLQRELTASKDEIHRLGQIIPKL 88 (240)
Q Consensus 65 vaLrqeL~aaq~El~~l~~~i~~i 88 (240)
.+.+|||++.+.||-.+.--++.|
T Consensus 5 aaikqelaaikkelaaikfelaai 28 (34)
T 3r4h_A 5 AAIKQELAAIKKELAAIKFELAAI 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777776665444443
No 103
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=47.40 E-value=1.3e+02 Score=28.35 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 119 EVVQLRAEVQKLNSSRQELTTQIKGL 144 (240)
Q Consensus 119 El~Q~r~e~q~L~a~RQELt~qvq~l 144 (240)
+-.++..+++.|.+.|..++.+|..+
T Consensus 39 ~~r~~~~~~~~l~~~~n~~sk~i~~~ 64 (455)
T 2dq0_A 39 EWRTKLKEINRLRHERNKIAVEIGKR 64 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444456666666666666666543
No 104
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=46.04 E-value=1.8e+02 Score=26.79 Aligned_cols=45 Identities=18% Similarity=0.389 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318 136 ELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (240)
Q Consensus 136 ELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (240)
++....+.+.++|.........+..+..+++.+++++..+-..+-
T Consensus 289 ~l~~~~~~~~~~l~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~L~ 333 (517)
T 4ad8_A 289 DVVEFGAQAAEELAGLEEDERDAGSLQADVDALHAELLKVGQALD 333 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445554444444455555555555555544444433
No 105
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.78 E-value=61 Score=25.13 Aligned_cols=38 Identities=18% Similarity=0.374 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (240)
Q Consensus 115 ~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~ 152 (240)
|+..++..++.++..|.+...+...++..|..+|.+.+
T Consensus 2 ~~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~ 39 (97)
T 2eqb_B 2 PLGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKEN 39 (97)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555433
No 106
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=45.23 E-value=78 Score=23.25 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 123 LRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (240)
Q Consensus 123 ~r~e~q~L~a~RQELt~qvq~ltqeL~r~~ 152 (240)
+..++..|.....||..++..+.+++.+..
T Consensus 4 L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 4 LTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888889999999999888888755
No 107
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=45.20 E-value=1e+02 Score=30.41 Aligned_cols=29 Identities=21% Similarity=0.099 Sum_probs=15.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318 152 EAENKQLIAMRADIDGIRSELVEARRAFE 180 (240)
Q Consensus 152 ~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (240)
..|++++-.+..+.+---+|+++.++.++
T Consensus 32 e~~~k~Le~~Qe~F~~~y~~~~~~~~~~~ 60 (585)
T 1y1u_A 32 ENELKKLQQTQEYFIIQYQESLRIQAQFA 60 (585)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHhhhhHHHHhhHhHHh
Confidence 33444455555555555566665554444
No 108
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=45.01 E-value=82 Score=23.13 Aligned_cols=28 Identities=11% Similarity=0.253 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 026318 136 ELTTQIKGLTKDVNRLEAENKQLIAMRA 163 (240)
Q Consensus 136 ELt~qvq~ltqeL~r~~~d~qqip~l~a 163 (240)
.|.++++.+..|+++...|-|.+-.+|.
T Consensus 39 ~lE~el~~~r~e~~~ql~EYq~LlnvK~ 66 (86)
T 1x8y_A 39 EKEREMAEMRARMQQQLDEYQELLDIKL 66 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555544
No 109
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=44.79 E-value=39 Score=23.29 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (240)
Q Consensus 118 ~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~ 149 (240)
..+..+..++..|.....+|..+|..|..++.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555443
No 110
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=44.56 E-value=61 Score=24.13 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=21.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 026318 153 AENKQLIAMRADIDGIRSELVEARRAFEF 181 (240)
Q Consensus 153 ~d~qqip~l~aEid~lrqElqr~Raa~Ey 181 (240)
+..+.+-.|...|+.|++|+..+|..+|-
T Consensus 17 ~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~ 45 (83)
T 2xdj_A 17 AHSQLLTQLQQQLSDNQSDIDSLRGQIQE 45 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44455667777888888888888887764
No 111
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=44.36 E-value=87 Score=30.09 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 118 AEVVQLRAEVQKLNSSRQELTTQIKGL 144 (240)
Q Consensus 118 ~El~Q~r~e~q~L~a~RQELt~qvq~l 144 (240)
.+..++..+++.|.+.|..++.+|..+
T Consensus 40 ~~~r~~~~~~~~l~~~rn~~sk~i~~~ 66 (485)
T 3qne_A 40 KEWVKLRFDLDEHNKKLNSVQKEIGKR 66 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666666666666443
No 112
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=43.57 E-value=2e+02 Score=26.42 Aligned_cols=99 Identities=20% Similarity=0.261 Sum_probs=66.0
Q ss_pred hhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHH-HHHHHHHHHHHHHHHH
Q 026318 60 AIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQ-LRAEVQKLNSSRQELT 138 (240)
Q Consensus 60 LAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q-~r~e~q~L~a~RQELt 138 (240)
+......||+.+...+.+++.|....+.-.+-.+.=. .|.+. .-..+-....+-...++ +..| .++...|.+++
T Consensus 15 ~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~-rL~eq---~g~~~~ds~~v~~~mq~~Le~E-re~~~~Rd~~a 89 (302)
T 3ibp_A 15 AREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLN-QLSEQ---CGEEFTSSQDVTEYLQQLLERE-REAIVERDEVG 89 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---TTCCCSSHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHH-HHHHH---hCCcCCCHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4567788999999999999999888887666554411 12221 12223445556666633 3344 78889999999
Q ss_pred HHHHHHHHHHHHHHH-hhhhhHHHHH
Q 026318 139 TQIKGLTKDVNRLEA-ENKQLIAMRA 163 (240)
Q Consensus 139 ~qvq~ltqeL~r~~~-d~qqip~l~a 163 (240)
.+-+.+.+++.++.. +---.|.|++
T Consensus 90 ~~k~~Le~~ierLs~pgg~~dprL~~ 115 (302)
T 3ibp_A 90 ARKNAVDEEIERLSQPGGSEDQRLNA 115 (302)
T ss_dssp HHHHHHHHHHHHHHSCCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999999888776 4444555443
No 113
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=43.39 E-value=38 Score=26.93 Aligned_cols=36 Identities=14% Similarity=0.366 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHH
Q 026318 158 LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK 193 (240)
Q Consensus 158 ip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~ 193 (240)
--.|..+|..++.+|+.++.|+-|+++.+-+.++.+
T Consensus 9 ~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~L 44 (122)
T 3viq_A 9 RLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTL 44 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 456778888999999999999999999987766543
No 114
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=42.52 E-value=27 Score=31.37 Aligned_cols=46 Identities=13% Similarity=0.222 Sum_probs=31.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhH
Q 026318 152 EAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNL 200 (240)
Q Consensus 152 ~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknl 200 (240)
+...+++-.|.++++.|+.|+..+....+-.+|++.+. .+.++|++
T Consensus 181 n~~~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~r---l~~Lqk~~ 226 (315)
T 2ve7_A 181 NVDAFKLESLEAKNRALNEQIARLEQERSTANKANAER---LKRLQKSA 226 (315)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH---HHHHHHHH
Confidence 44566788888888888888888888777777765444 33445544
No 115
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=42.50 E-value=22 Score=29.15 Aligned_cols=21 Identities=10% Similarity=0.284 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 026318 116 VRAEVVQLRAEVQKLNSSRQE 136 (240)
Q Consensus 116 lk~El~Q~r~e~q~L~a~RQE 136 (240)
.+.++...+.-++.|...|.+
T Consensus 13 ~r~~l~~~~~~~~~le~l~~~ 33 (135)
T 2e7s_A 13 SLKTIASQKAAIENYNQLKED 33 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 116
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=42.29 E-value=52 Score=23.99 Aligned_cols=16 Identities=6% Similarity=0.077 Sum_probs=5.9
Q ss_pred HHHHHHHhhHHHHHHH
Q 026318 66 HLQRELTASKDEIHRL 81 (240)
Q Consensus 66 aLrqeL~aaq~El~~l 81 (240)
.|.+.+...+.+++..
T Consensus 19 ~l~~q~~~l~~~~~e~ 34 (107)
T 1fxk_A 19 AISVQKQTVEMQINET 34 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 117
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=41.95 E-value=1.6e+02 Score=27.18 Aligned_cols=26 Identities=19% Similarity=0.469 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 117 RAEVVQLRAEVQKLNSSRQELTTQIK 142 (240)
Q Consensus 117 k~El~Q~r~e~q~L~a~RQELt~qvq 142 (240)
-.+-..+..+++.|.+.|..++.+|.
T Consensus 34 ~~~~r~~~~~~~~l~~~~n~~sk~i~ 59 (421)
T 1ses_A 34 DREVQELKKRLQEVQTERNQVAKRVP 59 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566666666666666654
No 118
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=41.89 E-value=63 Score=23.62 Aligned_cols=56 Identities=23% Similarity=0.296 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 026318 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEA 175 (240)
Q Consensus 116 lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~ 175 (240)
.+.|+.++-.+|.+|...-.+|..++..-. -...|...+..+.++++.+.++|..+
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~ladp~----~y~~d~~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVADAS----FFSQPHEQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTT----GGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcc----cccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777776666666655554311 01123444555555555555555544
No 119
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=41.43 E-value=1.5e+02 Score=24.61 Aligned_cols=61 Identities=13% Similarity=0.143 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHhhh
Q 026318 120 VVQLRAEVQKLNSSRQELTTQI-KGLTKDVNRLEAENKQ-LIAMRADIDGIRSELVEARRAFE 180 (240)
Q Consensus 120 l~Q~r~e~q~L~a~RQELt~qv-q~ltqeL~r~~~d~qq-ip~l~aEid~lrqElqr~Raa~E 180 (240)
...+..+...+......++..+ ..+.+.|.....+..+ .=.+..++..+.++++.....++
T Consensus 78 w~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~ 140 (305)
T 2efl_A 78 FISNLNEMNDYAGQHEVISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLE 140 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554 4444555444444331 12233344444444444333333
No 120
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=40.87 E-value=58 Score=24.51 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 026318 160 AMRADIDGIRSELVEARRAF 179 (240)
Q Consensus 160 ~l~aEid~lrqElqr~Raa~ 179 (240)
.|+++|+.|..|+..+|..|
T Consensus 54 ~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 54 RLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777665
No 121
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=39.64 E-value=60 Score=24.83 Aligned_cols=44 Identities=9% Similarity=0.209 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 026318 126 EVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIR 169 (240)
Q Consensus 126 e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lr 169 (240)
+++.|....|.|..+++.+++.++........+-.....|+.|.
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~ 45 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQ 45 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35566666666666666666666665555444444444555444
No 122
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=39.22 E-value=63 Score=28.17 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 120 VVQLRAEVQKLNSSRQELTTQIKG 143 (240)
Q Consensus 120 l~Q~r~e~q~L~a~RQELt~qvq~ 143 (240)
|+|+|+|--...+.-++|+.....
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~ 55 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNT 55 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666555555554443
No 123
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=38.92 E-value=1.2e+02 Score=22.71 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=23.7
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhccccc
Q 026318 186 NEEQIEQKQAMENNLISMAREIEKLRAELLNTERRAC 222 (240)
Q Consensus 186 ~~e~~Eq~qaMEknlisMarEvEKLRaElanaekRa~ 222 (240)
|....++.+....+--+..+|.++|+.|..+-..|-+
T Consensus 36 N~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 36 NNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555556777888888888877666543
No 124
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=38.73 E-value=91 Score=24.22 Aligned_cols=52 Identities=23% Similarity=0.306 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh---hhhcchHHHHH
Q 026318 141 IKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEF---EKKANEEQIEQ 192 (240)
Q Consensus 141 vq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey---EKK~~~e~~Eq 192 (240)
+..|.+++.+...+.-+||.|++.++--+.-...=|++=|- ||-.....+++
T Consensus 40 ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aERaaREk~~~EKe~L~~ql~~ 94 (96)
T 3fx0_A 40 IDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQAREKLAEKKELLQEQLEQ 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSCC------
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 44555567777788888999999998888888877777553 44444444443
No 125
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=37.97 E-value=89 Score=20.85 Aligned_cols=58 Identities=17% Similarity=0.293 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 026318 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFE 182 (240)
Q Consensus 115 ~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyE 182 (240)
|+...+.++...+..+.....++...++.+...+. .+..++...+.++..+...++|.
T Consensus 2 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~----------~~~~~l~~~~~~I~~~k~qi~~y 59 (60)
T 3htk_A 2 PFANTKKTLENQVEELTEKCSLKTDEFLKAKEKIN----------EIFEKLNTIRDEVIKKKNQNEYY 59 (60)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444555555554444444444444444444433 34445555555555555555553
No 126
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=37.94 E-value=1.7e+02 Score=24.08 Aligned_cols=69 Identities=20% Similarity=0.273 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHH
Q 026318 123 LRAEVQKLNSSRQELTTQIKGLTKDVNR--LEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIE 191 (240)
Q Consensus 123 ~r~e~q~L~a~RQELt~qvq~ltqeL~r--~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~E 191 (240)
+-.+.+.|.+-=-+|..-|..|.+|+.. .+...+|+-.+..+|+.+..||...-..|.-||-..-..-|
T Consensus 19 L~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE 89 (141)
T 3okq_A 19 LGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWE 89 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHH
Confidence 4456667777777777777777888764 34577899999999999999999999999999876655444
No 127
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=37.86 E-value=61 Score=23.89 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 026318 160 AMRADIDGIRSELVEARRAF 179 (240)
Q Consensus 160 ~l~aEid~lrqElqr~Raa~ 179 (240)
.|+++|+.|..|+..+|..|
T Consensus 54 ~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 54 RLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888654
No 128
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=37.61 E-value=63 Score=26.14 Aligned_cols=57 Identities=14% Similarity=0.252 Sum_probs=37.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 026318 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFE 182 (240)
Q Consensus 114 e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyE 182 (240)
|.+|+|+++++- +|...|--|.+ ...+.|.--|..+..|++.|-.||.+++..-.|+
T Consensus 6 e~~K~Eiq~L~d---rLD~~~rKlaa---------a~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~~ 62 (123)
T 2lf0_A 6 EVEKNEIKRLSD---RLDAIRHQQAD---------LSLVEAADKYAELEKEKATLEAEIARLREVHSQK 62 (123)
T ss_dssp CSHHHHHHHHHH---HHHHHHHHHHH---------SCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHH---------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666554 33333332222 2345688889999999999999999998876654
No 129
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=37.39 E-value=73 Score=21.88 Aligned_cols=39 Identities=15% Similarity=0.316 Sum_probs=34.0
Q ss_pred HHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhh
Q 026318 50 MHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKL 88 (240)
Q Consensus 50 iqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i 88 (240)
...|-..|..|++-...|-..|..|.++|..|+..+.++
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446778899999999999999999999999998887765
No 130
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=37.22 E-value=28 Score=27.08 Aligned_cols=12 Identities=25% Similarity=0.495 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 026318 138 TTQIKGLTKDVN 149 (240)
Q Consensus 138 t~qvq~ltqeL~ 149 (240)
..+|+.|..+|.
T Consensus 22 ~~~~~~l~~~l~ 33 (182)
T 3kqg_A 22 NTKIRALQGSLE 33 (182)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 131
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=37.20 E-value=78 Score=24.29 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=34.4
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhh
Q 026318 38 TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQII 85 (240)
Q Consensus 38 ~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i 85 (240)
-+|-+|..|..||+.+-.-=--|=.+|..+||.- .+||.+|+.-+
T Consensus 40 eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~Y---EeEI~rLr~eL 84 (92)
T 3vp9_A 40 DYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAY---EEEIKHLKLGL 84 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 5788899999999988777777888999998843 46666665544
No 132
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=36.09 E-value=56 Score=23.67 Aligned_cols=13 Identities=15% Similarity=0.488 Sum_probs=5.0
Q ss_pred HHHHHHHhhHHHH
Q 026318 66 HLQRELTASKDEI 78 (240)
Q Consensus 66 aLrqeL~aaq~El 78 (240)
.|++++...+.|+
T Consensus 54 ~Lr~~i~~L~~El 66 (70)
T 1gd2_E 54 QLRQKVRQLEEEL 66 (70)
T ss_dssp HHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 133
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=35.83 E-value=2.9e+02 Score=26.16 Aligned_cols=105 Identities=10% Similarity=0.147 Sum_probs=64.0
Q ss_pred HHHHHH-hhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHH
Q 026318 50 MHRIIS-ENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQ 128 (240)
Q Consensus 50 iqrLl~-dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q 128 (240)
||.+|. -|+.|-...--|++.|... .....+...+++.+++...+--+.....|.+=.|+.
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~-----------s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s------- 115 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNY-----------QKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQIN------- 115 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHH-----------HHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHH-------
Confidence 566554 3555555566666665443 345566778889998887777766666665544332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 026318 129 KLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEF 181 (240)
Q Consensus 129 ~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey 181 (240)
.+|-.++.-|.. +....++.|-.|+.-|+.++-++||+=.+|||
T Consensus 116 ------~eLe~~i~~lk~---~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~ 159 (390)
T 1deq_A 116 ------EDLRSRIEILRR---KVIEQVQRINLLQKNVRDQLVDMKRLEVDIDI 159 (390)
T ss_pred ------HHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333333322 33344556777888888888888887766654
No 134
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=35.48 E-value=1.2e+02 Score=28.54 Aligned_cols=34 Identities=12% Similarity=0.212 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRL 151 (240)
Q Consensus 118 ~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~ 151 (240)
.++..+-.+-.++...-++|-++-..+++++.++
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~ 64 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKR 64 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444444443
No 135
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=35.41 E-value=1.4e+02 Score=22.33 Aligned_cols=13 Identities=8% Similarity=0.365 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 026318 163 ADIDGIRSELVEA 175 (240)
Q Consensus 163 aEid~lrqElqr~ 175 (240)
.|||+|..++.+.
T Consensus 77 ~e~dnl~~~~~~~ 89 (93)
T 3s4r_A 77 VERDNLAEDIMRL 89 (93)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 136
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=35.13 E-value=1.8e+02 Score=23.61 Aligned_cols=77 Identities=14% Similarity=0.198 Sum_probs=47.9
Q ss_pred hhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026318 59 HAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELT 138 (240)
Q Consensus 59 RLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt 138 (240)
-|+++...|-.+|...-+.|..|-..++.+..-.|.|. .++.+|+.|++.. ..|+.++-.+. ..|-
T Consensus 54 ~f~~~~~ela~dli~kakqIe~LIdsLPg~~~seeeQ~----~ri~~Le~E~~~~---~~el~~~v~ea-------e~ll 119 (151)
T 1yke_B 54 EFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQL----RKIDMLQKKLVEV---EDEKIEAIKKK-------EKLL 119 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSCHHHHH----HHHHHHHHHHHHH---HHHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHH----HHHHHHHHHHHHH---HHHHHHHHHHH-------HHHH
Confidence 45566666778888899999999888898875555554 4566777665543 33444444444 4444
Q ss_pred HHHHHHHHHHH
Q 026318 139 TQIKGLTKDVN 149 (240)
Q Consensus 139 ~qvq~ltqeL~ 149 (240)
.+|+.+-.+++
T Consensus 120 ~~v~~~l~~ia 130 (151)
T 1yke_B 120 RHVDSLIEDFV 130 (151)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHHH
Confidence 45555444433
No 137
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=34.99 E-value=1.1e+02 Score=22.47 Aligned_cols=56 Identities=25% Similarity=0.431 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHH
Q 026318 136 ELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIE 208 (240)
Q Consensus 136 ELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvE 208 (240)
+|-.||..++.|=+ -+..|||+++......|.-||.|-. ..+.+|..++++-+.|+
T Consensus 4 eLr~qi~~l~~e~~----------~l~~e~dn~~~~~edfk~KyE~E~~-------~R~~~E~d~~~LrkdvD 59 (86)
T 3swk_A 4 ELRRQVDQLTNDKA----------RVEVERDNLAEDIMRLREKLQEEML-------QREEAENTLQSFRQDVD 59 (86)
T ss_dssp HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHhhHH----------HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhHH
Confidence 45556666665533 2445777777777777777776643 44566666655554443
No 138
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=34.53 E-value=2.8e+02 Score=26.48 Aligned_cols=28 Identities=0% Similarity=-0.154 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 118 AEVVQLRAEVQKLNSSRQELTTQIKGLT 145 (240)
Q Consensus 118 ~El~Q~r~e~q~L~a~RQELt~qvq~lt 145 (240)
.+-..+..+++.|.+.|..++.+|..+.
T Consensus 44 ~~~r~~~~~~~~l~~~rN~~sk~i~~~~ 71 (484)
T 3lss_A 44 KKWRRTQFLTEASKKLINICSKAVGAKK 71 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445566666666666666665543
No 139
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=33.22 E-value=1.4e+02 Score=21.69 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 026318 125 AEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFE 182 (240)
Q Consensus 125 ~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyE 182 (240)
.|.+.+...--.|.++++.+..|+++...|-|.+-.+|.-+| .||---|.-+|-|
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le---~EIatYRkLLEGE 59 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALD---MEIHAYRKLLEGE 59 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcC
Confidence 344444444445555666666666666666666666554443 4555555555544
No 140
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=33.07 E-value=1.2e+02 Score=28.10 Aligned_cols=31 Identities=16% Similarity=0.447 Sum_probs=19.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKG 143 (240)
Q Consensus 113 ~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ 143 (240)
.+.+++++.++..+++.|...-.++..+++.
T Consensus 70 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 70 TTEIQNRVKELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp TTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777666655555555544
No 141
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=32.91 E-value=1.5e+02 Score=28.49 Aligned_cols=35 Identities=17% Similarity=0.224 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (240)
Q Consensus 118 ~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~ 152 (240)
+++..+-.+-.++...-++|-++...+++++..+.
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k 67 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRF 67 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444444433
No 142
>2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 1.90A {Salmonella typhimurium}
Probab=32.80 E-value=2.1e+02 Score=23.73 Aligned_cols=78 Identities=14% Similarity=0.163 Sum_probs=56.3
Q ss_pred hhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHHHHHHHh
Q 026318 102 RGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE---NKQLIAMRADIDGIRSELVEARRA 178 (240)
Q Consensus 102 k~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d---~qqip~l~aEid~lrqElqr~Raa 178 (240)
.+.+|..+++..+....=+..+.+=++.-...-.+++.-+|.+..-+-.+... .....++..|++.|+.|+.+.=..
T Consensus 10 ~~~~l~~~~~~l~q~~~n~~~~~s~l~~ae~aL~~i~~~l~r~rel~vqa~ngt~s~~dr~~i~~e~~~l~~~i~~~an~ 89 (248)
T 2d4x_A 10 QAVVLSQAQAQNSQYALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLMNLANS 89 (248)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 46678888888888887777777777777777777777777777655554422 245677889999999999886554
Q ss_pred h
Q 026318 179 F 179 (240)
Q Consensus 179 ~ 179 (240)
=
T Consensus 90 ~ 90 (248)
T 2d4x_A 90 T 90 (248)
T ss_dssp B
T ss_pred C
Confidence 3
No 143
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=32.63 E-value=53 Score=26.24 Aligned_cols=21 Identities=10% Similarity=0.213 Sum_probs=11.3
Q ss_pred hhhHhhHHHHHHHHhhHHHHH
Q 026318 59 HAIDDNTHLQRELTASKDEIH 79 (240)
Q Consensus 59 RLAathvaLrqeL~aaq~El~ 79 (240)
+++....+|++++-++..+|.
T Consensus 35 ~fa~~r~~le~emRaan~~La 55 (118)
T 2y39_A 35 AFAQRRREIETRLRAANGKLA 55 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555554
No 144
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=32.62 E-value=90 Score=26.17 Aligned_cols=46 Identities=15% Similarity=0.278 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318 135 QELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (240)
Q Consensus 135 QELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (240)
+.|..++..+...|.-+..+.-.-..+++++|.++.|.-.+|-+.+
T Consensus 79 d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~ 124 (158)
T 3tul_A 79 DAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALD 124 (158)
T ss_dssp HHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666789999999998877776543
No 145
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=32.18 E-value=1.7e+02 Score=22.83 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 026318 143 GLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (240)
Q Consensus 143 ~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (240)
+|.++-+..+.--.++-.|..||..|.|+|+-++..-
T Consensus 54 SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~~~~ 90 (99)
T 3ni0_A 54 SLEKKVSQALEQQARIKELENEVTKLNQELENLRIQK 90 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433322233458888888888888888887543
No 146
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=32.08 E-value=72 Score=25.32 Aligned_cols=61 Identities=8% Similarity=0.137 Sum_probs=36.0
Q ss_pred hhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 60 AIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTT 139 (240)
Q Consensus 60 LAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~ 139 (240)
|....+.|..++...+.+|+.+.+++.--..-++. +|. .=|+|=.++.|+...
T Consensus 5 L~~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~------------------------eL~---~LI~KWr~asq~aae 57 (122)
T 3viq_A 5 LLSRRLKLEKEVRNLQEQLITAETARKVEAKNEDK------------------------DLQ---TLIQKWKNAAQQAAE 57 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------------------------HHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH------------------------HHH---HHHHHHHHHHHHHHH
Confidence 44445566666666666666665554322222211 222 336777888888888
Q ss_pred HHHHHHHH
Q 026318 140 QIKGLTKD 147 (240)
Q Consensus 140 qvq~ltqe 147 (240)
.|....++
T Consensus 58 eLf~~~~~ 65 (122)
T 3viq_A 58 VLFKPMAE 65 (122)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877766
No 147
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=31.22 E-value=1.3e+02 Score=20.82 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 026318 159 IAMRADIDGIRSELVEARRAF 179 (240)
Q Consensus 159 p~l~aEid~lrqElqr~Raa~ 179 (240)
-.|+++|+.|+.|++.++.-|
T Consensus 40 ~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 40 EALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777766543
No 148
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=29.90 E-value=2.3e+02 Score=23.29 Aligned_cols=66 Identities=18% Similarity=0.120 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhccc
Q 026318 141 IKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERR 220 (240)
Q Consensus 141 vq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaElanaekR 220 (240)
+.....++.|.+.=.++--.-..++|..+.++..+++.+ -+.-.+++.++..+.+..-+
T Consensus 76 l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~a~a~l---------------------~~a~a~l~~a~~~l~~~~I~ 134 (277)
T 2f1m_A 76 ANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAV---------------------TAAKAAVETARINLAYTKVT 134 (277)
T ss_dssp HHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHTTEEC
T ss_pred HHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHhhcCEEE
Confidence 344445555555433333344556666666555554433 22234566677777777777
Q ss_pred ccccccc
Q 026318 221 ACGLGKI 227 (240)
Q Consensus 221 a~~~~~~ 227 (240)
|-..|.+
T Consensus 135 AP~~G~V 141 (277)
T 2f1m_A 135 SPISGRI 141 (277)
T ss_dssp CSSCEEE
T ss_pred CCCCeEE
Confidence 6555544
No 149
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=29.73 E-value=2.6e+02 Score=23.76 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=14.8
Q ss_pred HHHHHHhhHHHHHHHhhhhhhhhhhhhHhH
Q 026318 67 LQRELTASKDEIHRLGQIIPKLRADKEAHT 96 (240)
Q Consensus 67 LrqeL~aaq~El~~l~~~i~~i~ae~e~q~ 96 (240)
++|.+..++.|+.-....-..+.+|=|.++
T Consensus 22 ~~q~~~~le~El~EFqesSrELE~ELE~eL 51 (189)
T 2v71_A 22 YKQSFQEARDELVEFQEGSRELEAELEAQL 51 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555444444444444433
No 150
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=29.08 E-value=3.2e+02 Score=24.66 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=23.8
Q ss_pred HHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhh
Q 026318 50 MHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKL 88 (240)
Q Consensus 50 iqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i 88 (240)
...|+.+...+|..|..+...|..- -+..+...+.+.
T Consensus 74 W~~ll~ete~~a~~H~~lae~L~~~--v~~~l~~~~ke~ 110 (406)
T 4dyl_A 74 WAEITSQTEGLSRLLRQHAEDLNSG--PLSKLSLLIRER 110 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 4567788888888888887777542 234444444443
No 151
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=28.56 E-value=37 Score=29.59 Aligned_cols=65 Identities=14% Similarity=0.147 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhh---HhHHHHHhhhhhhhhhh
Q 026318 46 QRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE---AHTRELFDRGLKLEVEL 110 (240)
Q Consensus 46 Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e---~q~Rel~ek~~KmEAel 110 (240)
+...+..++..+..+.+.+-.|..|+...+.+|..|........++-. .+.-.||.++-|+.-+.
T Consensus 139 ~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~~vt~i~w~~ 206 (250)
T 2ve7_C 139 CRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSKIEWEY 206 (250)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHHHHHCCEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhceeec
Confidence 344677788888888888888888888888888777777777776655 56777777777776554
No 152
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=28.40 E-value=1.4e+02 Score=21.16 Aligned_cols=29 Identities=10% Similarity=0.284 Sum_probs=25.5
Q ss_pred hhhhhHhhHHHHHHHHhhHHHHHHHhhhh
Q 026318 57 NRHAIDDNTHLQRELTASKDEIHRLGQII 85 (240)
Q Consensus 57 NqRLAathvaLrqeL~aaq~El~~l~~~i 85 (240)
-..|++|--+||.++...++|..+|+...
T Consensus 5 EKSlVDtVYaLkDqV~eL~qe~k~m~k~l 33 (56)
T 2w6b_A 5 SKSLVDTVYALKDEVQELRQDNKKMKKSL 33 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999998765
No 153
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=28.26 E-value=1.1e+02 Score=23.40 Aligned_cols=37 Identities=14% Similarity=0.304 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 026318 114 EPVRAEVVQLRAEVQKLNSSRQ-ELTTQIKGLTKDVNR 150 (240)
Q Consensus 114 e~lk~El~Q~r~e~q~L~a~RQ-ELt~qvq~ltqeL~r 150 (240)
|.+|.|...+-.|+..+...++ |.-.||++=.+|++.
T Consensus 17 D~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~ 54 (92)
T 3vp9_A 17 DAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQ 54 (92)
T ss_dssp CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 4666777666677666666665 777776655555443
No 154
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=27.99 E-value=1.2e+02 Score=24.92 Aligned_cols=12 Identities=8% Similarity=-0.020 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 026318 164 DIDGIRSELVEA 175 (240)
Q Consensus 164 Eid~lrqElqr~ 175 (240)
|...+.+|+.+.
T Consensus 91 e~~~i~~EY~r~ 102 (140)
T 1xaw_A 91 EYMAAADEYNRL 102 (140)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333445555554
No 155
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=27.96 E-value=2.6e+02 Score=23.23 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=16.1
Q ss_pred HHHHHHhhhhhhHhhHHHHHHH
Q 026318 50 MHRIISENRHAIDDNTHLQREL 71 (240)
Q Consensus 50 iqrLl~dNqRLAathvaLrqeL 71 (240)
...++.+..++|..|..+-+.|
T Consensus 71 w~~~l~~~e~~a~~h~~~a~~L 92 (301)
T 2efk_A 71 FVQILQEVNDFAGQRELVAENL 92 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777888888877777
No 156
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=27.73 E-value=2.9e+02 Score=23.66 Aligned_cols=12 Identities=0% Similarity=0.169 Sum_probs=5.2
Q ss_pred hHHHHHHHHHHH
Q 026318 39 LEEEIEIQRREM 50 (240)
Q Consensus 39 LEe~La~Q~~Ei 50 (240)
++..+.....++
T Consensus 68 ~~~~l~~~~a~l 79 (369)
T 4dk0_A 68 QINTLNTRKAAL 79 (369)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 157
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=27.25 E-value=2e+02 Score=26.48 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 026318 122 QLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSE 171 (240)
Q Consensus 122 Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqE 171 (240)
++..++.+|.....+|..+++.+..++.........--.++-.+.+--+|
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~e 56 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQE 56 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443333333333333333333
No 158
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=26.88 E-value=1.7e+02 Score=20.67 Aligned_cols=83 Identities=11% Similarity=0.170 Sum_probs=46.0
Q ss_pred HHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH----hhhhhHHHHHHHHHHH
Q 026318 97 RELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQI---KGLTKDVNRLEA----ENKQLIAMRADIDGIR 169 (240)
Q Consensus 97 Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qv---q~ltqeL~r~~~----d~qqip~l~aEid~lr 169 (240)
.+|..=+...|..|.+.+++-.++..+..-++++.+...|+.+.- ..+.+.-..+-. .....+.++.-++.|.
T Consensus 12 ~el~~WL~e~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~ 91 (118)
T 3uul_A 12 EEVLTWLLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLN 91 (118)
T ss_dssp HHHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 355566666777777777777777777777777766666665542 222222111111 1122345666666666
Q ss_pred HHHHHHHHhh
Q 026318 170 SELVEARRAF 179 (240)
Q Consensus 170 qElqr~Raa~ 179 (240)
.-...+...+
T Consensus 92 ~rw~~L~~~~ 101 (118)
T 3uul_A 92 ARWEALRVES 101 (118)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6555554443
No 159
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=26.85 E-value=2.2e+02 Score=21.93 Aligned_cols=20 Identities=30% Similarity=0.647 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026318 133 SRQELTTQIKGLTKDVNRLE 152 (240)
Q Consensus 133 ~RQELt~qvq~ltqeL~r~~ 152 (240)
..+||..++..|+++++++.
T Consensus 48 t~~eL~~EI~~L~~eI~~LE 67 (96)
T 1t3j_A 48 TQKHLEEEIARLSKEIDQLE 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 160
>3v47_C Flagellin; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Salmonella enterica subsp}
Probab=26.79 E-value=2.6e+02 Score=26.44 Aligned_cols=81 Identities=7% Similarity=0.103 Sum_probs=48.0
Q ss_pred hhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHHHHHHH
Q 026318 101 DRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE---NKQLIAMRADIDGIRSELVEARR 177 (240)
Q Consensus 101 ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d---~qqip~l~aEid~lrqElqr~Ra 177 (240)
-.+.+|.++++..+....=+....+=+|.-...-++.+.-+|.+..=.-.+..+ ....-++..||+.|+.||.+.=.
T Consensus 8 AIa~~lrsqi~gl~Qa~rN~~dgiS~lqtAEgAL~~i~~iLqRmRELaVQAaNgT~s~~DR~aIq~Ei~qL~~eI~~Ian 87 (425)
T 3v47_C 8 AIANRFTSNIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSN 87 (425)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788999999998888888888888888888888888888876544444332 24567888899999999988765
Q ss_pred hhhh
Q 026318 178 AFEF 181 (240)
Q Consensus 178 a~Ey 181 (240)
.-+|
T Consensus 88 ~T~f 91 (425)
T 3v47_C 88 QTQF 91 (425)
T ss_dssp HCEE
T ss_pred hCCc
Confidence 4443
No 161
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=26.68 E-value=2.2e+02 Score=21.98 Aligned_cols=63 Identities=25% Similarity=0.366 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhh----------hH------HHHHHHHHHHHHHHHHHHh
Q 026318 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR--LEAENKQ----------LI------AMRADIDGIRSELVEARRA 178 (240)
Q Consensus 117 k~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r--~~~d~qq----------ip------~l~aEid~lrqElqr~Raa 178 (240)
..++.-++-+|.+|...+..|..++..|--+|.+ +++|.-. =| ..+.+++.|+.|+.++|.-
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~ 90 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGL 90 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466667777777777777777777777777776 2222110 12 3456888899998888865
Q ss_pred h
Q 026318 179 F 179 (240)
Q Consensus 179 ~ 179 (240)
+
T Consensus 91 v 91 (100)
T 1go4_E 91 L 91 (100)
T ss_dssp H
T ss_pred H
Confidence 4
No 162
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=26.67 E-value=92 Score=23.59 Aligned_cols=39 Identities=15% Similarity=0.249 Sum_probs=32.3
Q ss_pred HHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhh
Q 026318 50 MHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKL 88 (240)
Q Consensus 50 iqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i 88 (240)
+..-|.+|..|-.....|..|++..+.|+..|...+.-+
T Consensus 41 L~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 41 LYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455688999999999999999999999998887666543
No 163
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=26.50 E-value=3.5e+02 Score=25.37 Aligned_cols=29 Identities=17% Similarity=0.262 Sum_probs=18.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhcc
Q 026318 191 EQKQAMENNLISMAREIEKLRAELLNTER 219 (240)
Q Consensus 191 Eq~qaMEknlisMarEvEKLRaElanaek 219 (240)
++.+.++..+-+....|+.|...+..-+.
T Consensus 105 ~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 105 NTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45666666666677777777776655443
No 164
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=26.38 E-value=4.6e+02 Score=25.51 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 026318 159 IAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELL 215 (240)
Q Consensus 159 p~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaEla 215 (240)
-.|...|++++++++++-.-++-..+---....+.+..|.|+.+.-.+++..=.++.
T Consensus 633 ~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 689 (695)
T 2j69_A 633 KRINDDIVSRKSELDNLVKQKQTREINRESEFNRLKNLQEDVIAQLQKIEAAYSNLL 689 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 457788999999999999988887777777888888888866665555554433333
No 165
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=26.21 E-value=21 Score=21.85 Aligned_cols=23 Identities=13% Similarity=0.120 Sum_probs=12.1
Q ss_pred HHHHhhhhhhHhhHHHHHHHHhh
Q 026318 52 RIISENRHAIDDNTHLQRELTAS 74 (240)
Q Consensus 52 rLl~dNqRLAathvaLrqeL~aa 74 (240)
.|--+|..|-....+|+|-++..
T Consensus 4 alefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555443
No 166
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=26.13 E-value=1.9e+02 Score=24.80 Aligned_cols=31 Identities=10% Similarity=0.133 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (240)
Q Consensus 117 k~El~Q~r~e~q~L~a~RQELt~qvq~ltqe 147 (240)
..-+.+++.-|++|...=-.|+.++....+|
T Consensus 12 q~ql~~ad~LV~~L~~En~~L~~ql~~k~~e 42 (190)
T 4emc_A 12 KQQIDSADLLVANLVNENFVLSEKLDTKATE 42 (190)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555666655555555555543333
No 167
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=26.10 E-value=2.2e+02 Score=21.71 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHh
Q 026318 141 IKGLTKDVNRLEAE 154 (240)
Q Consensus 141 vq~ltqeL~r~~~d 154 (240)
|+.||+||+.+..+
T Consensus 38 i~~Lt~eLq~A~~e 51 (90)
T 4b6x_A 38 VNNLTDELQDAIDE 51 (90)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 56777777765544
No 168
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=25.97 E-value=1.5e+02 Score=19.92 Aligned_cols=43 Identities=23% Similarity=0.451 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHH
Q 026318 158 LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIE 208 (240)
Q Consensus 158 ip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvE 208 (240)
+.+|+.|+..|+.| .|--|.-+ -.--..|++||++.++-.-+.
T Consensus 2 laalkselqalkke------gfspeela--aleselqalekklaalksklq 44 (48)
T 1g6u_A 2 LAALKSELQALKKE------GFSPEELA--ALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHT------TCSHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHc------CCCHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666654 22222111 111246777887776655443
No 169
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=25.79 E-value=2.1e+02 Score=21.49 Aligned_cols=14 Identities=29% Similarity=0.292 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 026318 124 RAEVQKLNSSRQEL 137 (240)
Q Consensus 124 r~e~q~L~a~RQEL 137 (240)
.+||+-=.+...||
T Consensus 20 eaEIqAKQ~i~EEL 33 (81)
T 1wt6_A 20 EEEVLTRQSLSREM 33 (81)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 170
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=25.58 E-value=1.2e+02 Score=24.51 Aligned_cols=85 Identities=15% Similarity=0.234 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHH-----------HHHHHhHHHHHHHH
Q 026318 139 TQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK-----------QAMENNLISMAREI 207 (240)
Q Consensus 139 ~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~~~e~~Eq~-----------qaMEknlisMarEv 207 (240)
-.+|.+..||.++..-++..-.--.|...--.|..|+|..+|.---..-+.++++ ..-+.+|.-++|=+
T Consensus 3 Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl 82 (147)
T 2b9c_A 3 RRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKL 82 (147)
T ss_dssp --------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3566677777777776666666667777777778888888776655555555544 23455666666667
Q ss_pred HHHHHHHhhhcccccc
Q 026318 208 EKLRAELLNTERRACG 223 (240)
Q Consensus 208 EKLRaElanaekRa~~ 223 (240)
--+-.+|..++.|+-+
T Consensus 83 ~~~E~dLeraeeRae~ 98 (147)
T 2b9c_A 83 VIIESDLERAEERAEL 98 (147)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777777644
No 171
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=25.24 E-value=2e+02 Score=20.98 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=6.2
Q ss_pred HHhhhhhhhcchHHH
Q 026318 176 RRAFEFEKKANEEQI 190 (240)
Q Consensus 176 Raa~EyEKK~~~e~~ 190 (240)
..+.|-|=.+|-.++
T Consensus 65 K~~Le~EIatYRkLL 79 (86)
T 1x8y_A 65 KLALDMEIHAYRKLL 79 (86)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHH
Confidence 334444444443333
No 172
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=25.23 E-value=2.4e+02 Score=22.17 Aligned_cols=73 Identities=10% Similarity=0.087 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchHHHHH----------------------------HHHHHHHHHHHhh
Q 026318 6 HISRHPDSARGFRDGPRPVLTRGLAPMHFHPMTLEEEIE----------------------------IQRREMHRIISEN 57 (240)
Q Consensus 6 r~p~~~~~~rg~~~~p~p~~~r~~~~~~p~p~~LEe~La----------------------------~Q~~EiqrLl~dN 57 (240)
+.|+. +-+|.++.+..+.+.+|+|..+...+. .|...|++|-.+|
T Consensus 29 ~a~p~-------~~~~~~~~~~~~~~~~~~~~~f~~~~~ela~dli~k~kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~ 101 (132)
T 1ykh_B 29 NHGFE-------RLTVNEPQMSDKHATVVPPEEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKL 101 (132)
T ss_dssp SSCCC----------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHH
T ss_pred CCCcc-------cCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Q ss_pred hhhhHhhHHHHHHHHhhHHHHHHHhhhhhhh
Q 026318 58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKL 88 (240)
Q Consensus 58 qRLAathvaLrqeL~aaq~El~~l~~~i~~i 88 (240)
+..+.. |++.+..+...+..+...+.+|
T Consensus 102 ~~~~~e---l~~~v~e~e~ll~~v~~~l~~i 129 (132)
T 1ykh_B 102 VEVEDE---KIEAIKKKEKLMRHVDSMIEDF 129 (132)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHH
No 173
>3pwx_A Putative flagellar HOOK-associated protein; structural genomics, structural protein, PSI-2, protein STRU initiative; 2.50A {Vibrio parahaemolyticus}
Probab=24.78 E-value=3.2e+02 Score=23.11 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=57.1
Q ss_pred hhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHHH
Q 026318 101 DRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEA---ENKQLIAMRADIDGIRSELVEARR 177 (240)
Q Consensus 101 ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~---d~qqip~l~aEid~lrqElqr~Ra 177 (240)
-++.+|..+++..+....=+..+.+-++.-...-++++.-+|.+..-+-.+.. .....-++..|++.|+.|+.+.=.
T Consensus 11 a~~~~l~~~i~~l~q~~~N~~~a~s~l~~ae~aL~~i~~~l~r~rel~vqa~ngt~s~~dr~ai~~E~~~l~~~i~~iaN 90 (239)
T 3pwx_A 11 IKLLNLERENSAIAQYQSNIANLKTTLSSQETHLDSVSESLKSMRDIVLWGANGSLTDQDRSGMITELKSYRDSIESSFN 90 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCTTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35677888888888877777777777777777777777777777655444432 224566889999999999988755
Q ss_pred hh
Q 026318 178 AF 179 (240)
Q Consensus 178 a~ 179 (240)
+-
T Consensus 91 t~ 92 (239)
T 3pwx_A 91 AQ 92 (239)
T ss_dssp CB
T ss_pred cc
Confidence 54
No 174
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=24.77 E-value=2.8e+02 Score=24.96 Aligned_cols=69 Identities=16% Similarity=0.166 Sum_probs=34.7
Q ss_pred hhHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhc----chhhHHHHHHHHHHHH
Q 026318 60 AIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRA----SEPVRAEVVQLRAEVQ 128 (240)
Q Consensus 60 LAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa----~e~lk~El~Q~r~e~q 128 (240)
|...--.|+.++..-|+..+.+...+.+.+..-+...+.+-...-.+..-|.+ ++.+++|+.+++.+++
T Consensus 121 l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 121 LKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555544444443322 2344555555444443
No 175
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=24.73 E-value=1e+02 Score=28.54 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 119 EVVQLRAEVQKLNSSRQELTTQIKGL 144 (240)
Q Consensus 119 El~Q~r~e~q~L~a~RQELt~qvq~l 144 (240)
+-.++..+++.|.+.|..++.+|..+
T Consensus 38 ~~r~~~~~~~~l~~~~n~~sk~i~~~ 63 (425)
T 2dq3_A 38 RRREIIKRLEALRSERNKLSKEIGKL 63 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666666666543
No 176
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=24.68 E-value=3.6e+02 Score=25.77 Aligned_cols=15 Identities=0% Similarity=-0.002 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 026318 160 AMRADIDGIRSELVE 174 (240)
Q Consensus 160 ~l~aEid~lrqElqr 174 (240)
.+.+++..+..++..
T Consensus 134 ~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 134 LLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 177
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=24.59 E-value=3.3e+02 Score=26.98 Aligned_cols=82 Identities=13% Similarity=0.274 Sum_probs=48.0
Q ss_pred HHHHHHHhhHHHHHHHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 66 HLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLT 145 (240)
Q Consensus 66 aLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~lt 145 (240)
.||..+...+++++.| .+.+.+=+.+..++.-+..-++..-.....++.+...+...+..|.-.|+++..+...+-
T Consensus 24 ~lr~~~q~~e~~ik~L----e~~Qe~f~~~yk~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~R~e~~~k~~~~l 99 (596)
T 1bg1_A 24 DVRKRVQDLEQKMKVV----ENLQDDFDFNYKTLKSQGDMQDLNGNNQSVTRQKMQQLEQMLTALDQMRRSIVSELAGLL 99 (596)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTTCC---------CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777777766 445555555555554221111111122234666777788888999999999998877765
Q ss_pred HHHHHH
Q 026318 146 KDVNRL 151 (240)
Q Consensus 146 qeL~r~ 151 (240)
..+...
T Consensus 100 ~~~~~l 105 (596)
T 1bg1_A 100 SAMEYV 105 (596)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555433
No 178
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=24.40 E-value=2.9e+02 Score=22.60 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=13.1
Q ss_pred HHHHHhhhhhhHhhHHHHHHH
Q 026318 51 HRIISENRHAIDDNTHLQREL 71 (240)
Q Consensus 51 qrLl~dNqRLAathvaLrqeL 71 (240)
..|+....++|..|..+-+.|
T Consensus 76 ~~~~~~~e~~a~~h~~~a~~l 96 (276)
T 2v0o_A 76 DVFKTSTEKLANCHLDLVRKL 96 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555566677777776666
No 179
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=24.22 E-value=2.7e+02 Score=23.65 Aligned_cols=8 Identities=0% Similarity=0.040 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 026318 118 AEVVQLRA 125 (240)
Q Consensus 118 ~El~Q~r~ 125 (240)
.++.+++.
T Consensus 114 ~~~~~a~~ 121 (341)
T 3fpp_A 114 QDLDNAAT 121 (341)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444333
No 180
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=24.13 E-value=20 Score=25.58 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchHH
Q 026318 159 IAMRADIDGIRSELVEARRAFEFEKKANEEQ 189 (240)
Q Consensus 159 p~l~aEid~lrqElqr~Raa~EyEKK~~~e~ 189 (240)
+....||..|+.|+.+++..+++=||+..++
T Consensus 62 ~~~~~ei~~L~~e~~~L~~e~~~Lkk~~~~~ 92 (97)
T 2jn6_A 62 VSEAEQIRQLKKENALQRARTRHPAESCLEH 92 (97)
T ss_dssp HHTHHHHHHHHHCGGGGGGTTSCCCGGGGTS
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456789999999999999999999988764
No 181
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=24.13 E-value=25 Score=27.25 Aligned_cols=35 Identities=17% Similarity=0.473 Sum_probs=25.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 026318 146 KDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (240)
Q Consensus 146 qeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (240)
.|.+|-.--+-++.-|.+||+.+..+|.-.|+.|+
T Consensus 53 DEFAKWAKL~Rk~DKl~~ele~l~~~L~s~ks~fd 87 (94)
T 3vlc_E 53 DNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQ 87 (94)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTTHHHHTTTTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566777788888888888888888775
No 182
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=23.44 E-value=2.4e+02 Score=21.15 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHH
Q 026318 187 EEQIEQKQAMENNLISMAREIEKLR 211 (240)
Q Consensus 187 ~e~~Eq~qaMEknlisMarEvEKLR 211 (240)
++.....+..+.-|..-..-++||+
T Consensus 70 ~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 70 LELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445556666666666666666665
No 183
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=23.38 E-value=3.9e+02 Score=26.97 Aligned_cols=47 Identities=15% Similarity=0.384 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 026318 119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADI 165 (240)
Q Consensus 119 El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEi 165 (240)
+|...-+-|+.+...|.+|+.++|..++.......+..+...+-++|
T Consensus 11 dl~~i~~~i~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 57 (706)
T 3fhn_A 11 DLLNINDRIKQVQNERNELASKLQNLKQSLASNDTEVALSEVIAQDI 57 (706)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCCCHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 56778889999999999999999999987655555555555555554
No 184
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=23.25 E-value=2.4e+02 Score=21.18 Aligned_cols=28 Identities=14% Similarity=-0.040 Sum_probs=13.9
Q ss_pred hhhhhhhhhhhHhHHHHHhhhhhhhhhh
Q 026318 83 QIIPKLRADKEAHTRELFDRGLKLEVEL 110 (240)
Q Consensus 83 ~~i~~i~ae~e~q~Rel~ek~~KmEAel 110 (240)
..+.++...-+.++..+-..+..+|++|
T Consensus 26 ~~l~e~E~~~~~e~~~~q~~i~~lE~eL 53 (95)
T 3mov_A 26 ERIQELEDLLAKEKDNSRRMLTDKEREM 53 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555443
No 185
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=23.04 E-value=86 Score=24.97 Aligned_cols=36 Identities=14% Similarity=0.200 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 026318 144 LTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (240)
Q Consensus 144 ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (240)
|.+++...+..+..+|.++++++.|++++...-..+
T Consensus 3 L~~~~~~k~~~aa~L~~l~~ql~~l~~~l~~l~~~L 38 (147)
T 2rjz_A 3 LKQQFSTKAFQAANLEAYKAQMKEMEESFGALLRQL 38 (147)
T ss_dssp HHHHHHHTGGGCSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC
Confidence 445555555556666666666666666665544444
No 186
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=22.99 E-value=1.5e+02 Score=20.16 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 026318 129 KLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVE 174 (240)
Q Consensus 129 ~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr 174 (240)
.|.+..||+-. .+.+||++++-|. ||.+++|+.+
T Consensus 8 dle~~KqEIL~---E~RkElqK~K~EI---------IeAi~~El~~ 41 (45)
T 1use_A 8 DLQRVKQELLE---EVKKELQKVKEEI---------IEAFVQELRK 41 (45)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHH---------HHHHHHHHHh
Confidence 34445555533 3345555544332 4666666654
No 187
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=22.87 E-value=1.4e+02 Score=20.84 Aligned_cols=12 Identities=0% Similarity=0.335 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 026318 161 MRADIDGIRSEL 172 (240)
Q Consensus 161 l~aEid~lrqEl 172 (240)
|.+|++.|++++
T Consensus 49 L~~ev~~Lr~~l 60 (63)
T 2dgc_A 49 LENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 188
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=22.78 E-value=5.3e+02 Score=25.48 Aligned_cols=74 Identities=16% Similarity=0.149 Sum_probs=0.0
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 026318 111 RASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKA 185 (240)
Q Consensus 111 Ra~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEKK~ 185 (240)
| .+-.++|+-++-++++.+.+.+--++...|...+.|.....+.-.+-.--++++.=-.|-++....++-.|++
T Consensus 357 R-lddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiAE~KrK~dE~~aIKDA 430 (602)
T 1cii_A 357 R-LLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRKQDELKATKDA 430 (602)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhHHHHHHHH
No 189
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=22.69 E-value=1.1e+02 Score=20.98 Aligned_cols=30 Identities=10% Similarity=0.232 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhhhhhHhhHHHHHHHHhhHH
Q 026318 47 RREMHRIISENRHAIDDNTHLQRELTASKD 76 (240)
Q Consensus 47 ~~EiqrLl~dNqRLAathvaLrqeL~aaq~ 76 (240)
..++..|-.+|..|..+...|+.|+...++
T Consensus 28 e~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 28 EEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777777777666655443
No 190
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=22.18 E-value=3.3e+02 Score=22.32 Aligned_cols=35 Identities=20% Similarity=0.390 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026318 121 VQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN 155 (240)
Q Consensus 121 ~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~~d~ 155 (240)
..+..+..++......++..+..+.+.|.....+.
T Consensus 76 ~~~~~~~e~~a~~h~~~a~~l~~~~~~l~~~~~~~ 110 (276)
T 2v0o_A 76 DVFKTSTEKLANCHLDLVRKLQELIKEVQKYGEEQ 110 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555444443
No 191
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=22.04 E-value=4.6e+02 Score=24.13 Aligned_cols=13 Identities=23% Similarity=0.266 Sum_probs=5.6
Q ss_pred HHHHHhHHHHHHH
Q 026318 194 QAMENNLISMARE 206 (240)
Q Consensus 194 qaMEknlisMarE 206 (240)
-.++.+|+..+++
T Consensus 166 a~l~~aL~~~~~~ 178 (421)
T 1ses_A 166 ALYELALLRFAMD 178 (421)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 192
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=22.00 E-value=66 Score=27.68 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhh
Q 026318 41 EEIEIQRREMHRIISENRHAIDDN 64 (240)
Q Consensus 41 e~La~Q~~EiqrLl~dNqRLAath 64 (240)
++++...+++..|..+|+||..+|
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 577888999999999999998876
No 193
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=21.93 E-value=2.2e+02 Score=21.86 Aligned_cols=40 Identities=23% Similarity=0.133 Sum_probs=18.9
Q ss_pred HHhhhhhhhhhhhhHhHHHHHhhhhhhhhhhhcchhhHHH
Q 026318 80 RLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAE 119 (240)
Q Consensus 80 ~l~~~i~~i~ae~e~q~Rel~ek~~KmEAelRa~e~lk~E 119 (240)
+|.+....+..|-+.+|..|-.++.+||.=.+....+|..
T Consensus 40 rLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnK 79 (96)
T 1t3j_A 40 RLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNK 79 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3334444455555555555555555555433333333333
No 194
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=21.64 E-value=5.7e+02 Score=24.91 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=29.7
Q ss_pred HHHHHhhhhhhhcchHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 026318 173 VEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELL 215 (240)
Q Consensus 173 qr~Raa~EyEKK~~~e~~Eq~qaMEknlisMarEvEKLRaEla 215 (240)
..+|.-|+|=|..=.+++.+.+++.+|+...-.+|.||-..|.
T Consensus 114 ~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 114 TELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666667777777777777777777777776654
No 195
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=21.40 E-value=4.5e+02 Score=23.62 Aligned_cols=22 Identities=5% Similarity=0.116 Sum_probs=16.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHH
Q 026318 152 EAENKQLIAMRADIDGIRSELV 173 (240)
Q Consensus 152 ~~d~qqip~l~aEid~lrqElq 173 (240)
.++...||.|+.+|+.++.++.
T Consensus 172 ~~~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 172 KNQGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp HHTTCCHHHHHHHHHHHTGGGC
T ss_pred hcccccHHHHHHHHHHHHHHHH
Confidence 3455667888888888888877
No 196
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.98 E-value=2.9e+02 Score=21.28 Aligned_cols=37 Identities=30% Similarity=0.397 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (240)
Q Consensus 116 lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqeL~r~~ 152 (240)
+..|+..+..+...=...|.+.-.....+.+||.-+.
T Consensus 24 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 24 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555443
No 197
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=20.77 E-value=1.8e+02 Score=21.27 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=28.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026318 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (240)
Q Consensus 113 ~e~lk~El~Q~r~e~q~L~a~RQELt~qvq~ltqe 147 (240)
.+.+|+++..+-.++-.|.+.|-.++.+|..+.++
T Consensus 14 L~~lR~~ID~iD~~Ll~LL~~R~~~~~~Ig~~K~~ 48 (90)
T 2vkl_A 14 IDTLREEIDRLDAEILALVKRRAEVSKAIGKARMA 48 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55788888888888888888888888888777654
No 198
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=20.48 E-value=54 Score=20.02 Aligned_cols=20 Identities=35% Similarity=0.489 Sum_probs=11.6
Q ss_pred HhhHHHHHHHHhhHHHHHHH
Q 026318 62 DDNTHLQRELTASKDEIHRL 81 (240)
Q Consensus 62 athvaLrqeL~aaq~El~~l 81 (240)
.....|+||+++..-|+-.|
T Consensus 7 qknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 7 QKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHh
Confidence 33344677777776666443
No 199
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=20.24 E-value=2.7e+02 Score=20.67 Aligned_cols=9 Identities=33% Similarity=0.534 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 026318 161 MRADIDGIR 169 (240)
Q Consensus 161 l~aEid~lr 169 (240)
|.++++.++
T Consensus 82 l~~~~~~~k 90 (93)
T 3s4r_A 82 LAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 200
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=20.14 E-value=2.4e+02 Score=25.63 Aligned_cols=12 Identities=17% Similarity=0.254 Sum_probs=5.4
Q ss_pred HHHHhhhhhhhh
Q 026318 97 RELFDRGLKLEV 108 (240)
Q Consensus 97 Rel~ek~~KmEA 108 (240)
..|.+++.++|.
T Consensus 8 ~~~~~~~~~~e~ 19 (323)
T 1lwu_C 8 QKILEEVRILEQ 19 (323)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 201
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.03 E-value=2.4e+02 Score=26.11 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhhh
Q 026318 39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLR 89 (240)
Q Consensus 39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ 89 (240)
|+++|..-...+..|...+..+.+....+++.|...+.+-+.|...+-+++
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 202
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=20.01 E-value=1.3e+02 Score=22.76 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=32.4
Q ss_pred HHHHHHHhhhhhhHhhHHHHHHHHhhHHHHHHHhhhhhhh
Q 026318 49 EMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKL 88 (240)
Q Consensus 49 EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i 88 (240)
-+..-|.+|..|-.....++.|++..+.|...|...+.-+
T Consensus 32 AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~ 71 (83)
T 1wlq_A 32 ALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHV 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999999998887665533
Done!