BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026319
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 93/157 (59%), Gaps = 9/157 (5%)
Query: 79 DVCMTLERFFYLNLPEVQKALHANRTNL-PYGWSMCSGVLNYSDTDSNINILPVLKRIIQ 137
D C YLNLPEVQ ALHAN + + Y W++CS + + ++LPV + +IQ
Sbjct: 5 DPCAVFNSINYLNLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYRELIQ 64
Query: 138 NGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFH---KQQVGGWGTEYG 194
G+ VWV+SGD DSVVP+ +R R LA L V + W+ +++VGGW +Y
Sbjct: 65 AGLRVWVYSGDTDSVVPVSSTR---RSLAA-LELPVKTSWYPWYMAPTEREVGGWSVQYE 120
Query: 195 NLLTFVTVRGAAHMVPYAQPSRALHLFSSFVHGRRLP 231
LT+VTVRGA H+VP +P++A LF F+ G +P
Sbjct: 121 G-LTYVTVRGAGHLVPVHRPAQAFLLFKQFLKGEPMP 156
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 88/160 (55%), Gaps = 6/160 (3%)
Query: 79 DVCMTLERFFYLNLPEVQKALHANRTN-LPYGWSMCSGVLNYSDTDSNINILPVLKRIIQ 137
D C Y N +VQ ALHAN T + Y W+ CS +N D+ ++LP+ + +I
Sbjct: 5 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 64
Query: 138 NGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL 197
G+ +WVFSGD D+VVPL +R I L T + W+ Q+VGGW Y L
Sbjct: 65 AGLRIWVFSGDTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG-L 119
Query: 198 TFVTVRGAAHMVPYAQPSRALHLFSSFVHGRRLPNNTRPA 237
T V+VRGA H VP +P +AL LF F+ G+ +P T+ A
Sbjct: 120 TLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMPGQTKNA 159
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 85/156 (54%), Gaps = 6/156 (3%)
Query: 79 DVCMTLERFFYLNLPEVQKALHANRTN-LPYGWSMCSGVLNYSDTDSNINILPVLKRIIQ 137
D C Y N +VQ ALHAN T + Y W+ CS +N D+ ++LP+ + +I
Sbjct: 3 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 138 NGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL 197
G+ +WVFSGD D+VVPL +R I L T + W+ Q+VGGW Y L
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG-L 117
Query: 198 TFVTVRGAAHMVPYAQPSRALHLFSSFVHGRRLPNN 233
T V+VRGA H VP +P +AL LF F+ G+ +P
Sbjct: 118 TLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMPGQ 153
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 79 DVCMTLERFFYLNLPEVQKALHANRTN-LPYGWSMCSGVLNYSDTDSNINILPVLKRIIQ 137
D C Y N +VQ ALHAN T + Y W+ CS +N D+ ++LP+ + +I
Sbjct: 3 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 138 NGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL 197
G+ +WVFSGD D+VVPL +R I L T + W+ Q+VGGW Y L
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG-L 117
Query: 198 TFVTVRGAAHMVPYAQPSRALHLFSSFVHGRRLPN 232
T V+VRGA H VP +P +AL LF F+ G+ +P
Sbjct: 118 TLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMPG 152
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 79 DVCMTLERFFYLNLPEVQKALHANRTN-LPYGWSMCSGVLNYSDTDSNINILPVLKRIIQ 137
D C Y N +VQ ALHAN T + Y W+ CS +N D+ ++LP+ + +I
Sbjct: 3 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 138 NGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL 197
G+ +WVFSGD D+VVPL +R I L T + W+ Q+VGGW Y L
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG-L 117
Query: 198 TFVTVRGAAHMVPYAQPSRALHLFSSFVHGRRLPN 232
T V+VRGA H VP +P +AL LF F+ G+ +P
Sbjct: 118 TLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMPG 152
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 11/145 (7%)
Query: 89 YLNLPEVQKALHANRTNLPYGWSMCSGVLN--YSDTDSNINILPVLKRIIQNGIPVWVFS 146
YLN P V+KAL+ LP W MC+ ++N Y ++N LK + + +++
Sbjct: 14 YLNNPYVRKALNIPE-QLP-QWDMCNFLVNLQYRRLYRSMNS-QYLKLLSSQKYQILLYN 70
Query: 147 GDQDSVVPLLGSRTLIRELARDLNFEVT---VPYGAWFHKQQVGGWGTEYGNLLTFVTVR 203
GD D +G + L + + + V YG +Q+ G+ E+ ++ F+T++
Sbjct: 71 GDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGD--SGEQIAGFVKEFSHI-AFLTIK 127
Query: 204 GAAHMVPYAQPSRALHLFSSFVHGR 228
GA HMVP +P A +FS F++ +
Sbjct: 128 GAGHMVPTDKPLAAFTMFSRFLNKQ 152
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 11/145 (7%)
Query: 89 YLNLPEVQKALHANRTNLPYGWSMCSGVLN--YSDTDSNINILPVLKRIIQNGIPVWVFS 146
YLN P V+KAL+ LP W MC+ ++N Y ++N LK + + +++
Sbjct: 312 YLNNPYVRKALNIPE-QLP-QWDMCNFLVNLQYRRLYRSMNS-QYLKLLSSQKYQILLYN 368
Query: 147 GDQDSVVPLLGSRTLIRELARDLNFEVT---VPYGAWFHKQQVGGWGTEYGNLLTFVTVR 203
GD D +G + L + + + V YG +Q+ G+ E+ ++ F+T++
Sbjct: 369 GDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGD--SGEQIAGFVKEFSHI-AFLTIK 425
Query: 204 GAAHMVPYAQPSRALHLFSSFVHGR 228
GA HMVP +P A +FS F++ +
Sbjct: 426 GAGHMVPTDKPLAAFTMFSRFLNKQ 450
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 47/196 (23%)
Query: 47 NNYDVILD-----VCYPTIVEQELRLRKMATKMSVGVDVCMTLERFFYLNLPEVQKALHA 101
N YD+ D +CYPT+ + + L + K +VG +V + + N + L A
Sbjct: 254 NVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVGAEV----DHYESCNFDINRNFLFA 309
Query: 102 NRTNLPYGWSMCSGVLNYSDTDSNINILPVLKRIIQNGIPVWVFSGDQDSVVPLLGSRTL 161
PY + ++ +P+ V++GD+D + LG++
Sbjct: 310 GDWMKPYH--------------------TAVTDLLNQDLPILVYAGDKDFICNWLGNKAW 349
Query: 162 IRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNL----------LTFVTVRGAAHMVPY 211
L + E F Q+V W + T++ V HMVP+
Sbjct: 350 TDVLPWKYDEE--------FASQKVRNWTASITDEVAGEVKSYKHFTYLRVFNGGHMVPF 401
Query: 212 AQPSRALHLFSSFVHG 227
P AL + + ++HG
Sbjct: 402 DVPENALSMVNEWIHG 417
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 47/196 (23%)
Query: 47 NNYDVILD-----VCYPTIVEQELRLRKMATKMSVGVDVCMTLERFFYLNLPEVQKALHA 101
N YD+ D +CYPT+ + + L + K +VG +V + + N + L A
Sbjct: 254 NVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVGAEV----DHYESCNFDINRNFLFA 309
Query: 102 NRTNLPYGWSMCSGVLNYSDTDSNINILPVLKRIIQNGIPVWVFSGDQDSVVPLLGSRTL 161
PY + ++ +P+ V++GD+D + LG++
Sbjct: 310 GDWMKPYH--------------------TAVTDLLNQDLPILVYAGDKDFICNWLGNKAW 349
Query: 162 IRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNL----------LTFVTVRGAAHMVPY 211
L + E F Q+V W + T++ V HMVP+
Sbjct: 350 TDVLPWKYDEE--------FASQKVRNWTASITDEVAGEVKSYKHFTYLRVFNGGHMVPF 401
Query: 212 AQPSRALHLFSSFVHG 227
P AL + + ++HG
Sbjct: 402 DVPENALSMVNEWIHG 417
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 18/138 (13%)
Query: 89 YLNLPEVQKALHANRTNLPYGWSMCSGV----LNYSDTDSNINILPVLKRIIQNGIPVWV 144
+ + P V +LH + + + W C+ L+ + +I++LP L +++GI + +
Sbjct: 322 FFSTPGVIDSLHLDSDKIDH-WKECTNSVGTKLSNPISKPSIHLLPGL---LESGIEIVL 377
Query: 145 FSGDQDSVVPLLGSRTLIRELARD--LNFEVTVPYGAWFHK-------QQVGGWGTEYGN 195
F+GD+D + G I L F W HK ++ G+ +Y
Sbjct: 378 FNGDKDLICNNKGVLDTIDNLKWGGIKGFSDDAVSFDWIHKSKSTDDSEEFSGY-VKYDR 436
Query: 196 LLTFVTVRGAAHMVPYAQ 213
LTFV+V A+HMVP+ +
Sbjct: 437 NLTFVSVYNASHMVPFDK 454
>pdb|3DOH|A Chain A, Crystal Structure Of A Thermostable Esterase
pdb|3DOH|B Chain B, Crystal Structure Of A Thermostable Esterase
pdb|3DOI|A Chain A, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
pdb|3DOI|B Chain B, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
Length = 380
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 140 IPVWVFSGDQDSVVPLLGSRTLIRELAR 167
IP+WVF + D VVP+ SR L+++LA
Sbjct: 309 IPIWVFHAEDDPVVPVENSRVLVKKLAE 336
>pdb|3TRD|A Chain A, Structure Of An Alpha-Beta Serine Hydrolase Homologue From
Coxiella Burnetii
Length = 208
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 135 IIQNGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFH 182
+ Q P + GDQD VVP + + +++ + F V +FH
Sbjct: 146 LTQMASPWLIVQGDQDEVVPFEQVKAFVNQISSPVEFVVMSGASHFFH 193
>pdb|3CEU|A Chain A, Crystal Structure Of Thiamine Phosphate Pyrophosphorylase
(Bt_0647) From Bacteroides Thetaiotaomicron. Northeast
Structural Genomics Consortium Target Btr268
pdb|3CEU|B Chain B, Crystal Structure Of Thiamine Phosphate Pyrophosphorylase
(Bt_0647) From Bacteroides Thetaiotaomicron. Northeast
Structural Genomics Consortium Target Btr268
Length = 210
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 41 IVGDYINNYDVILDVCYPTIVEQELRLRKMA 71
++GD N +D LD Y ++E +L+K+A
Sbjct: 171 VLGDLWNKFDACLDQNYLAVIEHFKKLKKLA 201
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 111 SMCSGVLNYSDTDSNINILPVLKRIIQNGIPVWVFSGDQDSVVPLLGSRTLIRELARD 168
+ G++ +S TD + LK I IPV V GD D VVP S L +L ++
Sbjct: 199 AQYDGIVAFSQTDFTND----LKGIT---IPVLVIHGDDDQVVPYADSGVLSAKLVKN 249
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,344,047
Number of Sequences: 62578
Number of extensions: 303566
Number of successful extensions: 686
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 646
Number of HSP's gapped (non-prelim): 23
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)