BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026320
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QWG|A Chain A, Crystal Structure Of Methanococcus Jannaschii
Phosphosulfolactate Synthase
Length = 251
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 102/241 (42%), Gaps = 41/241 (17%)
Query: 2 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV-STGDWAEHLIRNGPSAFKEYVED 60
G ++D +KF G+ +++ + ++E + + V G E+ G F E++ +
Sbjct: 36 GDYIDFVKFGWGTSAVIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKGK--FDEFLNE 93
Query: 61 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 120
C+++GF+ +E++ GS +I E ++ K G F V+ D+D+
Sbjct: 94 CEKLGFEAVEISDGSSDISLEERNNAIKRAKDNG------FMVLTEVGKKMPDKDKQL-- 145
Query: 121 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK---------HADSLRADI 171
+D I+ L+AGAD ++I+ + K D+
Sbjct: 146 -------------TIDDRIKLINFDLDAGADYVIIEGRESGKGKGLFDKEGKVKENELDV 192
Query: 172 IAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLEC----LRGRNLG 226
+AK + + K +FEA FI ++G VNL + +V+ LE LRG G
Sbjct: 193 LAK---NVDINKVIFEAPQKSQQVAFILKFGSSVNLANIAFDEVISLETLRRGLRGDTFG 249
Query: 227 K 227
K
Sbjct: 250 K 250
>pdb|1U83|A Chain A, Psl Synthase From Bacillus Subtilis
Length = 276
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 100/227 (44%), Gaps = 36/227 (15%)
Query: 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGD--WAEHLIRNGPSAFKEYVEDC 61
++D +KF G+ SL+ K +EE + +HD+ G + +++ + + F Y C
Sbjct: 65 YIDFVKFGWGT-SLLTKD-LEEKISTLKEHDITFFFGGTLFEKYVSQKKVNEFHRY---C 119
Query: 62 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 121
G + IE++ G+L + Y+ +F V+ S++ S A
Sbjct: 120 TYFGCEYIEISNGTLPXTNKEKAAYIA-------DFSDEFLVL---SEVGSKD-----AE 164
Query: 122 VARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD-----VCKHADSLRADIIAKVI 176
+A S E++E + EAGA+ ++ ++ + +C + +R I+ +I
Sbjct: 165 LASRQSSEEWLEYI-------VEDXEAGAEKVITEARESGTGGICSSSGDVRFQIVDDII 217
Query: 177 GRLGL-EKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLECLR 221
+ +FEA N + FI++ GP VNL + + LE LR
Sbjct: 218 SSDIDINRLIFEAPNKTLQQGFIQKIGPNVNLANIPFHDAIALETLR 264
>pdb|1JCJ|A Chain A, Observation Of Covalent Intermediates In An Enzyme
Mechanism At Atomic Resolution
pdb|1JCJ|B Chain B, Observation Of Covalent Intermediates In An Enzyme
Mechanism At Atomic Resolution
Length = 260
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM--FEATNPRTS 194
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+ A RT+
Sbjct: 151 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTVGFLPAGGVRTA 210
Query: 195 E 195
E
Sbjct: 211 E 211
>pdb|3NPX|A Chain A, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution
pdb|3NPX|B Chain B, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution
Length = 264
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 136 DLLIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM--FEATNPR 192
+ LIR+A E ++AGAD I+ + V A A I+ +VI +G+EKT+ A R
Sbjct: 149 EALIRKASEISIKAGADHIVTSTGKVAVGATPESARIMMEVIRDMGVEKTVGFIPAGGVR 208
Query: 193 TSE 195
T+E
Sbjct: 209 TAE 211
>pdb|3NPU|A Chain A, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution
pdb|3NPU|B Chain B, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution
pdb|3NPV|B Chain B, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution
pdb|3NPV|A Chain A, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution
Length = 263
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM--FEATNPRTS 194
LIR+A E ++AGAD I+ + V A A I+ +VI +G+EKT+ A RT+
Sbjct: 150 LIRKASEISIKAGADHIVTSTGKVAVGATPESARIMMEVIRDMGVEKTVGFIPAGGVRTA 209
Query: 195 E 195
E
Sbjct: 210 E 210
>pdb|3NPW|A Chain A, In Silico Designed Of An Improved Kemp Eliminase Ke70
Mutant By Computational Design And Directed Evolution
pdb|3NPW|B Chain B, In Silico Designed Of An Improved Kemp Eliminase Ke70
Mutant By Computational Design And Directed Evolution
Length = 264
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM--FEATNPRTS 194
LIR+A E ++AGAD I+ + V A A I+ +VI +G+EKT+ A RT+
Sbjct: 151 LIRKASEISIKAGADHIVTSTGKVAVGATPESARIMMEVIRDMGVEKTVGFIPAGGVRTA 210
Query: 195 E 195
E
Sbjct: 211 E 211
>pdb|3NQ2|A Chain A, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution R2 35G
pdb|3NQ2|B Chain B, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution R2 35G
Length = 264
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I+ + V + A A I+ +VI +G+EKT+
Sbjct: 151 LIRKASEISIKAGADHIVTSTGKVAEGATPESARIMMEVIRDMGVEKTV 199
>pdb|1JCL|A Chain A, Observation Of Covalent Intermediates In An Enzyme
Mechanism At Atomic Resolution
pdb|1JCL|B Chain B, Observation Of Covalent Intermediates In An Enzyme
Mechanism At Atomic Resolution
pdb|1P1X|A Chain A, Comparison Of Class I Aldolase Binding Site Architecture
Based On The Crystal Structure Of
2-Deoxyribose-5-Phosphate Aldolase Determined At 0.99
Angstrom Resolution
pdb|1P1X|B Chain B, Comparison Of Class I Aldolase Binding Site Architecture
Based On The Crystal Structure Of
2-Deoxyribose-5-Phosphate Aldolase Determined At 0.99
Angstrom Resolution
Length = 260
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 151 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 199
>pdb|1KTN|A Chain A, Structural Genomics, Protein Ec1535
pdb|1KTN|B Chain B, Structural Genomics, Protein Ec1535
Length = 250
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 150 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 198
>pdb|3NR0|A Chain A, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution R6 610A
pdb|3NR0|B Chain B, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution R6 610A
Length = 271
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I+ + V A A I+ +VI +G+EKT+
Sbjct: 151 LIRKASEISIKAGADNIVTSTGKVAVGATPESARIMMEVIRDMGVEKTV 199
>pdb|3Q2D|A Chain A, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution
pdb|3Q2D|B Chain B, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution
Length = 272
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I+ + V A A I+ +VI +G+EKT+
Sbjct: 152 LIRKASEISIKAGADNIVTSTGKVAVGATPESARIMMEVIRDMGVEKTV 200
>pdb|2FYN|B Chain B, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|E Chain E, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|H Chain H, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|K Chain K, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|N Chain N, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|Q Chain Q, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2QJY|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|E Chain E, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|H Chain H, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|K Chain K, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|N Chain N, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|Q Chain Q, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
Length = 269
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 12/70 (17%)
Query: 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDC--- 61
+G+K + GS MP P ++++V+ A HD V H + SAF + +
Sbjct: 172 ANGVKTTAGSWIAMPPPLMDDLVEYADGHDASV-------HAMAEDVSAFLMWAAEPKLM 224
Query: 62 --KQVGFDTI 69
KQ GF +
Sbjct: 225 ARKQAGFTAV 234
>pdb|2QJK|B Chain B, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|E Chain E, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|H Chain H, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|K Chain K, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|N Chain N, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|Q Chain Q, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJP|B Chain B, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|E Chain E, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|H Chain H, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|K Chain K, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
Length = 256
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 12/70 (17%)
Query: 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDC--- 61
+G+K + GS MP P ++++V+ A HD V H + SAF + +
Sbjct: 172 ANGVKTTAGSWIAMPPPLMDDLVEYADGHDASV-------HAMAEDVSAFLMWAAEPKLM 224
Query: 62 --KQVGFDTI 69
KQ GF +
Sbjct: 225 ARKQAGFTAV 234
>pdb|1I8J|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
pdb|1I8J|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
Length = 323
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 66 FDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 125
+ +E G + IPE+ L R + + +AG+++ F + + + SD R G VAR
Sbjct: 43 YKAVEAMPGVMRIPEKHLAREIERIANAGIRSVMTFGISHHTDETGSDAWREDG-LVARM 101
Query: 126 PR 127
R
Sbjct: 102 SR 103
>pdb|1B4E|A Chain A, X-Ray Structure Of 5-Aminolevulinic Acid Dehydratase
Complexed With The Inhibitor Levulinic Acid
Length = 323
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 66 FDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 125
+ +E G + IPE+ L R + + +AG+++ F + + + SD R G VAR
Sbjct: 43 YKAVEAMPGVMRIPEKHLAREIERIANAGIRSVMTFGISHHTDETGSDAWREDG-LVARM 101
Query: 126 PR 127
R
Sbjct: 102 SR 103
>pdb|1L6S|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
pdb|1L6S|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
pdb|1L6Y|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4-Oxosebacic Acid
pdb|1L6Y|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4-Oxosebacic Acid
Length = 323
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 66 FDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 125
+ +E G + IPE+ L R + + +AG+++ F + + + SD R G VAR
Sbjct: 43 YKAVEAMPGVMRIPEKHLAREIERIANAGIRSVMTFGISHHTDETGSDAWREDG-LVARM 101
Query: 126 PR 127
R
Sbjct: 102 SR 103
>pdb|3NQ8|A Chain A, Optimization Of The In Silico Designed Kemp Eliminase Ke70
By Computational Design And Directed Evolution R4 85A
Length = 269
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I+ + V A A I+ +VI +G+E T+
Sbjct: 152 LIRKASEISIKAGADYIVTSTGKVAVGATPESARIMMEVIRDMGVENTV 200
>pdb|3CT7|A Chain A, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|B Chain B, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|C Chain C, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|D Chain D, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|E Chain E, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|F Chain F, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CTL|A Chain A, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|B Chain B, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|C Chain C, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|D Chain D, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|E Chain E, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|F Chain F, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
Length = 231
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 70/182 (38%), Gaps = 27/182 (14%)
Query: 2 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQ----HDVYVSTGDWAEHLIRNGPSAFKEY 57
G FV L S F+ +V K A + H + D+ L R G +
Sbjct: 36 GHFVPNLTLSPF--------FVSQVKKLATKPLDCHLMVTRPQDYIAQLARAGADFITLH 87
Query: 58 VEDCKQVGFDTIE------LNVGSL---EIPEETLLRYV-RLVKSAGLKAKPKFAVMFNK 107
E F I+ + VG + E P E + Y+ + K + P FA +
Sbjct: 88 PETINGQAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTVDPGFA---GQ 144
Query: 108 SDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRA--ERCLEAGADMIMIDSDDVCKHAD 165
IP D+ R EY +VD +A E+ + AGAD+ ++ + + HA+
Sbjct: 145 PFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQATYEKLMAAGADVFIVGTSGLFNHAE 204
Query: 166 SL 167
++
Sbjct: 205 NI 206
>pdb|3HL2|A Chain A, The Crystal Structure Of The Human Sepsecs-Trnasec Complex
pdb|3HL2|B Chain B, The Crystal Structure Of The Human Sepsecs-Trnasec Complex
pdb|3HL2|C Chain C, The Crystal Structure Of The Human Sepsecs-Trnasec Complex
pdb|3HL2|D Chain D, The Crystal Structure Of The Human Sepsecs-Trnasec Complex
Length = 501
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 120 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD 159
AY+ A ++DVDL I+R +RCL+A +SDD
Sbjct: 432 AYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERSKESDD 471
>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
Length = 921
Score = 28.1 bits (61), Expect = 4.0, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 11/69 (15%)
Query: 13 GSHSLMPKPFIEEVVKRAHQHDVYVSTGD----------WAEHLIRNGPSAFKEYVEDCK 62
G H P ++EV+ AH D + + EH + GP K ++ K
Sbjct: 421 GDHEQTPANPVDEVIYEAHVRDFSIDANSGMKNKGKYLAFTEHGTK-GPDHVKTGIDSLK 479
Query: 63 QVGFDTIEL 71
++G T++L
Sbjct: 480 ELGITTVQL 488
>pdb|3NGW|A Chain A, Crystal Structure Of Molybdopterin-Guanine Dinucleotide
Biosynthesis Protein A From Archaeoglobus Fulgidus,
Northeast Structural Genomics Consortium Target Gr189
Length = 208
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 169 ADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLFV 209
A ++ V R+G EKT + EW + +Y P +FV
Sbjct: 4 AVLVGGVGRRIGXEKTEVXLCGKKLIEWVLEKYSPFQTVFV 44
>pdb|1NVM|A Chain A, Crystal Structure Of A Bifunctional Aldolase-Dehydrogenase
: Sequestering A Reactive And Volatile Intermediate
pdb|1NVM|C Chain C, Crystal Structure Of A Bifunctional Aldolase-Dehydrogenase
: Sequestering A Reactive And Volatile Intermediate
pdb|1NVM|E Chain E, Crystal Structure Of A Bifunctional Aldolase-Dehydrogenase
: Sequestering A Reactive And Volatile Intermediate
pdb|1NVM|G Chain G, Crystal Structure Of A Bifunctional Aldolase-Dehydrogenase
: Sequestering A Reactive And Volatile Intermediate
Length = 345
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 55 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK----AKPKFAVMFNKSDI 110
K+++E + +G DT+ + S IP E L +L++S G A A+ N DI
Sbjct: 123 KQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYMADSGGAMSMN--DI 180
Query: 111 PSDRDRAFGA 120
DR RAF A
Sbjct: 181 -RDRMRAFKA 189
>pdb|3B4U|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Agrobacterium Tumefaciens Str. C58
pdb|3B4U|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Agrobacterium Tumefaciens Str. C58
Length = 294
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 118 FGAYVA-RAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 155
FG A P T+ D+D +I A RCL G D + +
Sbjct: 5 FGLSAALTTPFKTDGTVDIDAMIAHARRCLSNGCDSVTL 43
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 136 DLLIRRAERCLEAGADMIMIDSDD 159
DL++ A+ C+ AGAD+ D D+
Sbjct: 143 DLIVHEAKECIAAGADVNAXDCDE 166
>pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|E Chain E, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|F Chain F, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|G Chain G, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|H Chain H, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC4|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|5BJ4|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2
pdb|5BJ4|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2
Length = 385
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 14 SHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNG 50
+ ++ PK +E + + A +HD Y+ + + EHL+ G
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG 213
>pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single
Mutant 1
pdb|1B5O|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Single
Mutant 1
Length = 385
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 14 SHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNG 50
+ ++ PK +E + + A +HD Y+ + + EHL+ G
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG 213
>pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus
pdb|1BJW|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus
Length = 382
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 14 SHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNG 50
+ ++ PK +E + + A +HD Y+ + + EHL+ G
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG 213
>pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
pdb|1GCK|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
pdb|1B5P|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1
pdb|1B5P|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1
Length = 385
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 14 SHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNG 50
+ ++ PK +E + + A +HD Y+ + + EHL+ G
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG 213
>pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|C Chain C, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|D Chain D, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
Length = 385
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 14 SHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNG 50
+ ++ PK +E + + A +HD Y+ + + EHL+ G
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG 213
>pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
Length = 385
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 14 SHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNG 50
+ ++ PK +E + + A +HD Y+ + + EHL+ G
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,145,190
Number of Sequences: 62578
Number of extensions: 287947
Number of successful extensions: 786
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 748
Number of HSP's gapped (non-prelim): 50
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)