BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026320
(240 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O27710|PSLS_METTH Phosphosulfolactate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=comA PE=3 SV=1
Length = 258
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 101/235 (42%), Gaps = 33/235 (14%)
Query: 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQ 63
+VD +KF G+ L + ++E V DV G I + +EY ++ +
Sbjct: 43 YVDFIKFGWGTLPLHRRDTVKEKVDMYRSFDVEPYPGGTLFE-IAHLNDKVEEYFQEARS 101
Query: 64 VGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 123
+GF+T+E++ G++EI E R + + G F V+ +RDR
Sbjct: 102 LGFETLEISNGTVEIETEEKCRLIEMAVDEG------FMVLSEVGKKDPERDRLL----- 150
Query: 124 RAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD------VCKHADSLRADIIAKVIG 177
+ D +R L AGA M+++++ + + ++R D +
Sbjct: 151 ----------EPDDRVRLVRADLRAGASMVLMEARESGQNIGIYDERGNIREDEFNHLTD 200
Query: 178 RLGLEKTMFEATNPRTSEWFIRRYGPKVNL-FVDHSQVMDLEC----LRGRNLGK 227
RL +++ ++EA +FI + GP VNL + ++ LE LRG LGK
Sbjct: 201 RLPMDRIIWEAPQKSQQVYFILKIGPDVNLGNIPPEEITALETIRRGLRGDTLGK 255
>sp|Q57703|PSLS_METJA Phosphosulfolactate synthase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=comA PE=1 SV=1
Length = 251
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 102/241 (42%), Gaps = 41/241 (17%)
Query: 2 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV-STGDWAEHLIRNGPSAFKEYVED 60
G ++D +KF G+ +++ + ++E + + V G E+ G F E++ +
Sbjct: 36 GDYIDFVKFGWGTSAVIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKGK--FDEFLNE 93
Query: 61 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 120
C+++GF+ +E++ GS +I E ++ K G F V+ D+D+
Sbjct: 94 CEKLGFEAVEISDGSSDISLEERKNAIKRAKDNG------FMVLTEVGKKMPDKDKQL-- 145
Query: 121 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK---------HADSLRADI 171
+D I+ L+AGAD ++I+ + K D+
Sbjct: 146 -------------TIDDRIKLINFDLDAGADYVIIEGRESGKGIGLFDKEGKVKENELDV 192
Query: 172 IAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLEC----LRGRNLG 226
+AK + + K +FEA FI ++G VNL + +V+ LE LRG G
Sbjct: 193 LAK---NVDINKVIFEAPQKSQQVAFILKFGSSVNLANIAFDEVISLETLRRGLRGDTFG 249
Query: 227 K 227
K
Sbjct: 250 K 250
>sp|O06739|PSLS_BACSU Phosphosulfolactate synthase OS=Bacillus subtilis (strain 168)
GN=yitD PE=1 SV=1
Length = 252
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 102/227 (44%), Gaps = 36/227 (15%)
Query: 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGD--WAEHLIRNGPSAFKEYVEDC 61
++D +KF G+ SL+ K +EE + +HD+ G + +++ + + F Y C
Sbjct: 43 YIDFVKFGWGT-SLLTKD-LEEKISTLKEHDITFFFGGTLFEKYVSQKKVNEFHRY---C 97
Query: 62 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 121
G + IE++ G+L + + Y+ +F V+ S++ S A
Sbjct: 98 TYFGCEYIEISNGTLPMTNKEKAAYIA-------DFSDEFLVL---SEVGSKD-----AE 142
Query: 122 VARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD-----VCKHADSLRADIIAKVI 176
+A S E++E + +EAGA+ ++ ++ + +C + +R I+ +I
Sbjct: 143 LASRQSSEEWLEYI-------VEDMEAGAEKVITEARESGTGGICSSSGDVRFQIVDDII 195
Query: 177 GRLGL-EKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLECLR 221
+ +FEA N + FI++ GP VNL + + LE LR
Sbjct: 196 SSDIDINRLIFEAPNKTLQQGFIQKIGPNVNLANIPFHDAIALETLR 242
>sp|Q6P7H4|NIPA_XENLA NIPA-like protein OS=Xenopus laevis GN=zc3hc1 PE=2 SV=1
Length = 477
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 23 IEEVVKRAHQHDVYVSTGDWAEH----LIRNGPSAFKEYVEDCKQVGFDTIEL------N 72
++E +++AH+ + EH L+ S ++VE + ++L +
Sbjct: 137 LQEALRKAHEKFCFWPDSPCPEHFWALLVTEPSSVLSDFVERFHNLCHLEMQLPSLKHED 196
Query: 73 VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSD 113
V S++I E+T+ R +RL++ + KPK N +PSD
Sbjct: 197 VKSMDITEDTVSRLLRLIED---ELKPKEGREANSHSLPSD 234
>sp|Q5SZL2|CE85L_HUMAN Centrosomal protein of 85 kDa-like OS=Homo sapiens GN=CEP85L PE=1
SV=1
Length = 805
Score = 31.6 bits (70), Expect = 5.4, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 122 VARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLR 168
+ + + E V V L ++ ERCLE G + M+D+ + D+LR
Sbjct: 567 ICQKKKEKELVTTVQSLQQKVERCLEDGIRLPMLDAKQLQNENDNLR 613
>sp|Q31SV8|DEOC_SHIBS Deoxyribose-phosphate aldolase OS=Shigella boydii serotype 4
(strain Sb227) GN=deoC PE=3 SV=1
Length = 259
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 150 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 198
>sp|B2TZR4|DEOC_SHIB3 Deoxyribose-phosphate aldolase OS=Shigella boydii serotype 18
(strain CDC 3083-94 / BS512) GN=deoC PE=3 SV=1
Length = 259
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 150 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 198
>sp|B1LEI6|DEOC_ECOSM Deoxyribose-phosphate aldolase OS=Escherichia coli (strain SMS-3-5
/ SECEC) GN=deoC PE=3 SV=1
Length = 259
Score = 31.2 bits (69), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 150 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 198
>sp|Q3YU12|DEOC_SHISS Deoxyribose-phosphate aldolase OS=Shigella sonnei (strain Ss046)
GN=deoC PE=3 SV=1
Length = 259
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 150 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 198
>sp|Q327L5|DEOC_SHIDS Deoxyribose-phosphate aldolase OS=Shigella dysenteriae serotype 1
(strain Sd197) GN=deoC PE=3 SV=1
Length = 259
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 150 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 198
>sp|B7LNS1|DEOC_ESCF3 Deoxyribose-phosphate aldolase OS=Escherichia fergusonii (strain
ATCC 35469 / DSM 13698 / CDC 0568-73) GN=deoC PE=3 SV=1
Length = 259
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 150 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 198
>sp|B6I6M8|DEOC_ECOSE Deoxyribose-phosphate aldolase OS=Escherichia coli (strain SE11)
GN=deoC PE=3 SV=1
Length = 259
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 150 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 198
>sp|B1IS38|DEOC_ECOLC Deoxyribose-phosphate aldolase OS=Escherichia coli (strain ATCC
8739 / DSM 1576 / Crooks) GN=deoC PE=3 SV=1
Length = 259
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 150 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 198
>sp|A8A8B0|DEOC_ECOHS Deoxyribose-phosphate aldolase OS=Escherichia coli O9:H4 (strain
HS) GN=deoC PE=3 SV=1
Length = 259
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 150 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 198
>sp|B7N2V7|DEOC_ECO81 Deoxyribose-phosphate aldolase OS=Escherichia coli O81 (strain
ED1a) GN=deoC PE=3 SV=1
Length = 259
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 150 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 198
>sp|B7NW61|DEOC_ECO7I Deoxyribose-phosphate aldolase OS=Escherichia coli O7:K1 (strain
IAI39 / ExPEC) GN=deoC PE=3 SV=1
Length = 259
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 150 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 198
>sp|B5Z4R3|DEOC_ECO5E Deoxyribose-phosphate aldolase OS=Escherichia coli O157:H7 (strain
EC4115 / EHEC) GN=deoC PE=3 SV=1
Length = 259
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 150 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 198
>sp|Q8XB36|DEOC_ECO57 Deoxyribose-phosphate aldolase OS=Escherichia coli O157:H7 GN=deoC
PE=3 SV=1
Length = 259
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 150 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 198
>sp|B7LEM7|DEOC_ECO55 Deoxyribose-phosphate aldolase OS=Escherichia coli (strain 55989 /
EAEC) GN=deoC PE=3 SV=1
Length = 259
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 150 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 198
>sp|B7UR09|DEOC_ECO27 Deoxyribose-phosphate aldolase OS=Escherichia coli O127:H6 (strain
E2348/69 / EPEC) GN=deoC PE=3 SV=1
Length = 259
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 150 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 198
>sp|A7ZVS4|DEOC_ECO24 Deoxyribose-phosphate aldolase OS=Escherichia coli O139:H28 (strain
E24377A / ETEC) GN=deoC PE=3 SV=1
Length = 259
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 150 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 198
>sp|B7LXU3|DEOC_ECO8A Deoxyribose-phosphate aldolase OS=Escherichia coli O8 (strain IAI1)
GN=deoC PE=3 SV=1
Length = 259
Score = 30.8 bits (68), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 150 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 198
>sp|Q83P02|DEOC_SHIFL Deoxyribose-phosphate aldolase OS=Shigella flexneri GN=deoC PE=3
SV=2
Length = 259
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 150 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 198
>sp|Q0SX30|DEOC_SHIF8 Deoxyribose-phosphate aldolase OS=Shigella flexneri serotype 5b
(strain 8401) GN=deoC PE=3 SV=1
Length = 259
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 150 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 198
>sp|B7NH49|DEOC_ECOLU Deoxyribose-phosphate aldolase OS=Escherichia coli O17:K52:H18
(strain UMN026 / ExPEC) GN=deoC PE=3 SV=1
Length = 259
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 150 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 198
>sp|P0A6L0|DEOC_ECOLI Deoxyribose-phosphate aldolase OS=Escherichia coli (strain K12)
GN=deoC PE=1 SV=1
Length = 259
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 150 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 198
>sp|P0A6L1|DEOC_ECOL6 Deoxyribose-phosphate aldolase OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=deoC PE=3 SV=1
Length = 259
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 150 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 198
>sp|Q0T8T2|DEOC_ECOL5 Deoxyribose-phosphate aldolase OS=Escherichia coli O6:K15:H31
(strain 536 / UPEC) GN=deoC PE=3 SV=1
Length = 259
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 150 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 198
>sp|B1XFJ1|DEOC_ECODH Deoxyribose-phosphate aldolase OS=Escherichia coli (strain K12 /
DH10B) GN=deoC PE=3 SV=1
Length = 259
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 150 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 198
>sp|C4ZT63|DEOC_ECOBW Deoxyribose-phosphate aldolase OS=Escherichia coli (strain K12 /
MC4100 / BW2952) GN=deoC PE=3 SV=1
Length = 259
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 150 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 198
>sp|B7MNI8|DEOC_ECO45 Deoxyribose-phosphate aldolase OS=Escherichia coli O45:K1 (strain
S88 / ExPEC) GN=deoC PE=3 SV=1
Length = 259
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 138 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 150 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 198
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,509,587
Number of Sequences: 539616
Number of extensions: 3630367
Number of successful extensions: 9824
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 9791
Number of HSP's gapped (non-prelim): 39
length of query: 240
length of database: 191,569,459
effective HSP length: 114
effective length of query: 126
effective length of database: 130,053,235
effective search space: 16386707610
effective search space used: 16386707610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)