Query 026320
Match_columns 240
No_of_seqs 102 out of 172
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 06:29:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026320.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026320hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03849 arch_ComA phosphosul 100.0 2.9E-81 6.2E-86 556.6 19.8 206 1-229 21-234 (237)
2 PF02679 ComA: (2R)-phospho-3- 100.0 1.2E-81 2.7E-86 561.3 12.7 204 1-227 34-244 (244)
3 COG1809 (2R)-phospho-3-sulfola 100.0 7.8E-73 1.7E-77 496.6 11.9 208 1-231 40-255 (258)
4 PRK13209 L-xylulose 5-phosphat 97.5 0.0017 3.6E-08 57.8 12.0 159 41-215 11-192 (283)
5 PRK13210 putative L-xylulose 5 97.0 0.028 6E-07 49.7 13.7 159 41-215 6-187 (284)
6 PRK08446 coproporphyrinogen II 96.9 0.0069 1.5E-07 56.6 10.2 124 4-156 51-185 (350)
7 PRK06294 coproporphyrinogen II 96.9 0.0053 1.1E-07 57.9 9.5 121 3-155 57-189 (370)
8 cd03174 DRE_TIM_metallolyase D 96.9 0.0044 9.5E-08 54.4 8.3 128 21-180 115-246 (265)
9 PF00682 HMGL-like: HMGL-like 96.9 0.0079 1.7E-07 52.5 9.3 127 21-179 108-236 (237)
10 PRK08195 4-hyroxy-2-oxovalerat 96.8 0.018 3.9E-07 54.1 12.0 143 4-180 101-245 (337)
11 TIGR00542 hxl6Piso_put hexulos 96.8 0.034 7.4E-07 49.6 13.1 156 43-214 8-186 (279)
12 cd07939 DRE_TIM_NifV Streptomy 96.8 0.017 3.7E-07 51.7 11.1 143 4-179 82-237 (259)
13 PRK05628 coproporphyrinogen II 96.7 0.012 2.7E-07 55.2 10.0 124 3-155 58-194 (375)
14 TIGR03217 4OH_2_O_val_ald 4-hy 96.6 0.037 7.9E-07 52.0 12.1 143 4-180 100-244 (333)
15 PRK05660 HemN family oxidoredu 96.5 0.021 4.6E-07 54.0 10.2 124 4-154 58-192 (378)
16 cd03174 DRE_TIM_metallolyase D 96.4 0.084 1.8E-06 46.3 12.8 132 5-177 33-182 (265)
17 TIGR00538 hemN oxygen-independ 96.4 0.027 5.8E-07 54.5 10.3 127 4-157 102-239 (455)
18 cd07943 DRE_TIM_HOA 4-hydroxy- 96.4 0.069 1.5E-06 47.9 12.2 142 4-180 98-241 (263)
19 cd07937 DRE_TIM_PC_TC_5S Pyruv 96.3 0.055 1.2E-06 49.2 11.4 141 5-180 105-248 (275)
20 PRK07379 coproporphyrinogen II 96.2 0.028 6.2E-07 53.6 9.5 124 4-154 66-200 (400)
21 PRK11858 aksA trans-homoaconit 96.2 0.06 1.3E-06 51.2 11.4 140 5-177 89-241 (378)
22 PRK09249 coproporphyrinogen II 96.2 0.043 9.3E-07 53.1 10.4 126 5-157 103-239 (453)
23 PRK05904 coproporphyrinogen II 96.2 0.047 1E-06 51.5 10.3 124 4-157 56-191 (353)
24 PRK13347 coproporphyrinogen II 96.1 0.049 1.1E-06 52.7 10.5 125 5-157 104-240 (453)
25 cd00408 DHDPS-like Dihydrodipi 96.1 0.21 4.6E-06 44.7 13.8 147 52-226 18-197 (281)
26 cd00950 DHDPS Dihydrodipicolin 96.0 0.15 3.2E-06 45.9 12.5 145 52-226 21-200 (284)
27 PLN02746 hydroxymethylglutaryl 96.0 0.11 2.3E-06 49.5 11.9 128 23-180 164-303 (347)
28 TIGR02660 nifV_homocitr homoci 96.0 0.072 1.6E-06 50.3 10.7 144 5-181 86-243 (365)
29 TIGR01212 radical SAM protein, 96.0 0.17 3.7E-06 46.6 12.9 151 8-187 81-259 (302)
30 cd07937 DRE_TIM_PC_TC_5S Pyruv 95.9 0.2 4.4E-06 45.5 13.1 95 54-179 93-187 (275)
31 PRK05692 hydroxymethylglutaryl 95.9 0.097 2.1E-06 48.1 10.9 129 22-180 121-261 (287)
32 PRK03170 dihydrodipicolinate s 95.9 0.24 5.3E-06 44.9 13.3 143 53-226 23-201 (292)
33 cd07944 DRE_TIM_HOA_like 4-hyd 95.9 0.059 1.3E-06 48.9 9.3 141 3-177 94-236 (266)
34 cd07941 DRE_TIM_LeuA3 Desulfob 95.9 0.12 2.6E-06 46.9 11.3 125 22-177 120-248 (273)
35 cd00951 KDGDH 5-dehydro-4-deox 95.8 0.29 6.3E-06 44.6 13.7 143 53-227 22-201 (289)
36 cd07940 DRE_TIM_IPMS 2-isoprop 95.7 0.14 3E-06 46.1 11.1 146 5-180 87-245 (268)
37 TIGR03249 KdgD 5-dehydro-4-deo 95.7 0.37 8.1E-06 44.0 14.0 143 52-226 26-205 (296)
38 PRK08208 coproporphyrinogen II 95.7 0.094 2E-06 50.5 10.5 127 5-157 92-229 (430)
39 TIGR00539 hemN_rel putative ox 95.7 0.059 1.3E-06 50.5 8.7 125 5-156 52-187 (360)
40 cd00377 ICL_PEPM Members of th 95.7 0.27 5.7E-06 44.1 12.5 123 53-202 85-219 (243)
41 PRK03620 5-dehydro-4-deoxygluc 95.6 0.56 1.2E-05 43.1 14.7 146 53-227 29-208 (303)
42 PRK01060 endonuclease IV; Prov 95.5 0.26 5.7E-06 43.7 11.9 148 53-214 13-183 (281)
43 PRK09057 coproporphyrinogen II 95.4 0.094 2E-06 49.6 9.3 124 4-155 55-189 (380)
44 TIGR03151 enACPred_II putative 95.4 0.19 4.1E-06 46.6 10.9 114 18-180 45-161 (307)
45 cd07938 DRE_TIM_HMGL 3-hydroxy 95.4 0.23 5E-06 45.3 11.2 128 21-180 114-255 (274)
46 TIGR00736 nifR3_rel_arch TIM-b 95.4 0.28 6E-06 44.1 11.6 116 8-164 108-227 (231)
47 PRK08599 coproporphyrinogen II 95.4 0.38 8.3E-06 45.2 13.0 124 5-156 52-187 (377)
48 cd07945 DRE_TIM_CMS Leptospira 95.3 0.25 5.4E-06 45.3 11.4 123 23-176 117-243 (280)
49 TIGR02090 LEU1_arch isopropylm 95.3 0.25 5.5E-06 46.7 11.5 125 21-178 112-238 (363)
50 PRK09856 fructoselysine 3-epim 95.2 0.58 1.3E-05 41.3 13.0 145 53-211 14-182 (275)
51 cd07948 DRE_TIM_HCS Saccharomy 95.1 0.3 6.5E-06 44.4 11.1 123 22-177 113-237 (262)
52 PRK05799 coproporphyrinogen II 95.1 0.21 4.5E-06 46.8 10.4 123 5-155 52-185 (374)
53 TIGR02320 PEP_mutase phosphoen 95.0 0.61 1.3E-05 43.2 13.0 101 52-180 92-206 (285)
54 PRK06582 coproporphyrinogen II 95.0 0.2 4.4E-06 47.8 10.1 123 3-155 61-196 (390)
55 TIGR03234 OH-pyruv-isom hydrox 94.9 0.61 1.3E-05 40.8 12.2 148 53-215 15-182 (254)
56 COG1082 IolE Sugar phosphate i 94.8 0.66 1.4E-05 40.5 12.2 146 52-215 15-182 (274)
57 COG0826 Collagenase and relate 94.8 0.34 7.4E-06 46.0 10.9 122 18-189 46-172 (347)
58 TIGR03128 RuMP_HxlA 3-hexulose 94.7 1.3 2.8E-05 37.7 13.4 87 58-180 69-157 (206)
59 cd07944 DRE_TIM_HOA_like 4-hyd 94.6 0.98 2.1E-05 41.0 13.0 158 5-224 34-209 (266)
60 PRK00311 panB 3-methyl-2-oxobu 94.6 0.2 4.4E-06 45.9 8.5 86 55-157 97-182 (264)
61 PF00701 DHDPS: Dihydrodipicol 94.5 1.7 3.7E-05 39.3 14.3 146 53-227 23-202 (289)
62 PRK01130 N-acetylmannosamine-6 94.4 1.3 2.7E-05 38.5 12.9 129 16-179 18-172 (221)
63 PRK08207 coproporphyrinogen II 94.4 0.34 7.3E-06 47.9 10.2 127 4-157 218-357 (488)
64 cd06557 KPHMT-like Ketopantoat 94.2 0.27 5.9E-06 44.8 8.6 86 55-157 94-179 (254)
65 PRK12331 oxaloacetate decarbox 94.1 0.42 9.1E-06 46.9 10.2 96 53-179 97-192 (448)
66 PRK00278 trpC indole-3-glycero 94.1 1.3 2.8E-05 40.1 12.7 111 58-207 126-238 (260)
67 TIGR03551 F420_cofH 7,8-dideme 93.9 1.2 2.5E-05 41.6 12.3 135 54-215 140-308 (343)
68 PRK12344 putative alpha-isopro 93.9 0.43 9.2E-06 47.6 9.9 141 5-176 99-253 (524)
69 PRK09058 coproporphyrinogen II 93.8 0.49 1.1E-05 45.9 10.1 124 4-155 114-249 (449)
70 PRK14040 oxaloacetate decarbox 93.8 0.52 1.1E-05 47.8 10.5 96 53-179 98-193 (593)
71 TIGR03470 HpnH hopanoid biosyn 93.8 0.88 1.9E-05 42.2 11.3 111 7-156 75-198 (318)
72 cd02911 arch_FMN Archeal FMN-b 93.8 0.4 8.7E-06 42.8 8.6 107 8-159 113-222 (233)
73 PF00682 HMGL-like: HMGL-like 93.8 0.37 8E-06 42.0 8.3 93 54-177 69-173 (237)
74 PRK13361 molybdenum cofactor b 93.7 1.9 4.1E-05 40.0 13.3 115 5-158 62-192 (329)
75 smart00729 Elp3 Elongator prot 93.7 2.5 5.4E-05 34.3 12.6 119 5-155 52-186 (216)
76 PRK07094 biotin synthase; Prov 93.6 2.2 4.7E-05 39.1 13.3 114 6-155 88-214 (323)
77 cd04743 NPD_PKS 2-Nitropropane 93.5 0.44 9.5E-06 45.0 8.9 99 14-158 33-132 (320)
78 TIGR02313 HpaI-NOT-DapA 2,4-di 93.5 2.3 4.9E-05 39.0 13.3 77 53-158 22-104 (294)
79 TIGR00222 panB 3-methyl-2-oxob 93.5 0.65 1.4E-05 42.7 9.7 82 59-157 100-181 (263)
80 PRK12330 oxaloacetate decarbox 93.4 0.69 1.5E-05 46.1 10.4 96 53-179 98-193 (499)
81 PRK04147 N-acetylneuraminate l 93.4 2.7 5.8E-05 38.3 13.5 143 52-221 24-177 (293)
82 COG0159 TrpA Tryptophan syntha 93.4 1.4 3E-05 40.7 11.6 117 22-178 80-199 (265)
83 cd06556 ICL_KPHMT Members of t 93.3 0.72 1.5E-05 41.6 9.5 97 59-181 96-192 (240)
84 PRK13813 orotidine 5'-phosphat 93.3 1.3 2.9E-05 38.1 10.9 25 1-25 25-49 (215)
85 cd07943 DRE_TIM_HOA 4-hydroxy- 93.3 0.95 2.1E-05 40.6 10.2 92 55-179 88-179 (263)
86 PRK05692 hydroxymethylglutaryl 93.2 0.68 1.5E-05 42.6 9.5 99 56-179 83-193 (287)
87 TIGR00683 nanA N-acetylneurami 93.2 2.7 5.8E-05 38.5 13.2 79 53-157 22-104 (290)
88 PRK13111 trpA tryptophan synth 93.2 1.5 3.2E-05 40.0 11.4 60 33-99 88-147 (258)
89 PRK08195 4-hyroxy-2-oxovalerat 93.1 0.85 1.9E-05 42.9 10.1 91 56-179 92-182 (337)
90 PRK14041 oxaloacetate decarbox 93.0 1.3 2.9E-05 43.7 11.7 142 5-181 109-253 (467)
91 cd06547 GH85_ENGase Endo-beta- 93.0 0.4 8.8E-06 45.3 7.8 178 3-189 31-242 (339)
92 TIGR03217 4OH_2_O_val_ald 4-hy 93.0 0.86 1.9E-05 42.9 10.0 91 56-179 91-181 (333)
93 cd07939 DRE_TIM_NifV Streptomy 93.0 0.89 1.9E-05 40.7 9.6 132 17-179 16-177 (259)
94 TIGR02090 LEU1_arch isopropylm 92.9 1 2.2E-05 42.6 10.5 96 54-180 73-180 (363)
95 PRK00915 2-isopropylmalate syn 92.9 0.99 2.1E-05 44.8 10.7 96 53-179 80-187 (513)
96 PRK12331 oxaloacetate decarbox 92.9 0.71 1.5E-05 45.3 9.6 143 5-182 110-255 (448)
97 PRK10076 pyruvate formate lyas 92.8 0.55 1.2E-05 41.5 7.9 117 34-184 41-162 (213)
98 COG3623 SgaU Putative L-xylulo 92.8 0.52 1.1E-05 43.3 7.8 58 43-101 10-74 (287)
99 PRK09282 pyruvate carboxylase 92.8 0.84 1.8E-05 46.3 10.2 96 53-179 97-192 (592)
100 PRK00915 2-isopropylmalate syn 92.7 0.97 2.1E-05 44.9 10.4 124 23-177 122-249 (513)
101 cd00954 NAL N-Acetylneuraminic 92.7 4.4 9.6E-05 36.8 13.9 111 53-189 22-137 (288)
102 cd07947 DRE_TIM_Re_CS Clostrid 92.6 1.4 3.1E-05 40.5 10.6 127 22-179 116-258 (279)
103 PLN02746 hydroxymethylglutaryl 92.6 1.1 2.3E-05 42.7 10.1 100 55-179 124-235 (347)
104 smart00518 AP2Ec AP endonuclea 92.5 2.8 6.1E-05 36.9 12.1 143 53-214 11-177 (273)
105 TIGR02317 prpB methylisocitrat 92.5 1.5 3.3E-05 40.6 10.6 124 21-180 60-197 (285)
106 PF03060 NMO: Nitronate monoox 92.4 1.1 2.3E-05 41.9 9.6 100 17-158 44-165 (330)
107 cd00952 CHBPH_aldolase Trans-o 92.4 3 6.6E-05 38.5 12.6 111 52-189 29-144 (309)
108 TIGR01037 pyrD_sub1_fam dihydr 92.3 1.1 2.3E-05 40.8 9.4 65 4-76 118-193 (300)
109 TIGR01108 oadA oxaloacetate de 92.3 1.4 3.1E-05 44.6 11.0 142 5-181 105-249 (582)
110 PLN03228 methylthioalkylmalate 92.3 1.7 3.6E-05 43.5 11.3 144 6-178 183-340 (503)
111 TIGR02321 Pphn_pyruv_hyd phosp 92.1 4.9 0.00011 37.3 13.6 134 21-188 62-213 (290)
112 TIGR00674 dapA dihydrodipicoli 92.1 2.4 5.3E-05 38.3 11.4 141 53-227 20-199 (285)
113 PRK14042 pyruvate carboxylase 92.1 0.88 1.9E-05 46.3 9.3 136 18-182 93-255 (596)
114 TIGR02319 CPEP_Pphonmut carbox 92.1 2 4.2E-05 40.1 10.9 125 21-181 64-202 (294)
115 PRK14041 oxaloacetate decarbox 92.1 1.4 3E-05 43.6 10.4 96 53-179 96-191 (467)
116 cd00019 AP2Ec AP endonuclease 92.0 1.1 2.4E-05 39.9 8.8 145 53-215 11-181 (279)
117 PRK09389 (R)-citramalate synth 91.9 1.6 3.4E-05 43.2 10.7 124 22-178 115-240 (488)
118 PRK12581 oxaloacetate decarbox 91.9 3.5 7.7E-05 40.9 13.0 99 54-181 165-263 (468)
119 COG0157 NadC Nicotinate-nucleo 91.7 0.81 1.8E-05 42.5 7.8 119 22-190 112-241 (280)
120 TIGR02668 moaA_archaeal probab 91.6 5.8 0.00013 35.8 13.3 84 5-101 57-155 (302)
121 cd04732 HisA HisA. Phosphorib 91.5 1.6 3.5E-05 37.8 9.2 97 53-187 30-127 (234)
122 TIGR00262 trpA tryptophan synt 91.5 11 0.00023 34.2 15.3 141 25-205 76-223 (256)
123 PRK06015 keto-hydroxyglutarate 91.4 2.5 5.4E-05 37.3 10.3 100 14-163 77-178 (201)
124 TIGR01108 oadA oxaloacetate de 91.3 2.1 4.6E-05 43.3 11.0 96 53-179 92-187 (582)
125 PRK00230 orotidine 5'-phosphat 91.2 1.5 3.2E-05 38.9 8.8 43 133-178 184-226 (230)
126 PLN02417 dihydrodipicolinate s 91.1 0.69 1.5E-05 42.1 6.8 78 52-158 22-105 (280)
127 TIGR02660 nifV_homocitr homoci 91.0 1.8 4E-05 40.9 9.7 95 54-179 74-180 (365)
128 PLN02424 ketopantoate hydroxym 91.0 1.4 3.1E-05 41.9 8.9 83 59-157 121-203 (332)
129 cd02810 DHOD_DHPD_FMN Dihydroo 91.0 1.3 2.9E-05 39.7 8.4 66 5-76 125-200 (289)
130 PRK14040 oxaloacetate decarbox 90.9 4.3 9.3E-05 41.3 12.8 126 21-180 124-254 (593)
131 PRK12581 oxaloacetate decarbox 90.9 2.2 4.8E-05 42.3 10.4 97 52-179 105-201 (468)
132 cd07940 DRE_TIM_IPMS 2-isoprop 90.9 2.3 5E-05 38.2 9.8 94 55-179 72-181 (268)
133 cd04729 NanE N-acetylmannosami 90.7 2.3 4.9E-05 36.9 9.4 126 19-179 25-176 (219)
134 PRK08649 inosine 5-monophospha 90.7 1.9 4.1E-05 41.3 9.6 94 23-159 120-217 (368)
135 TIGR00973 leuA_bact 2-isopropy 90.7 2.5 5.5E-05 41.8 10.7 125 22-177 118-246 (494)
136 PRK09282 pyruvate carboxylase 90.5 3 6.5E-05 42.4 11.3 140 4-180 109-253 (592)
137 PLN02951 Molybderin biosynthes 90.3 6.8 0.00015 37.3 12.9 85 6-103 108-208 (373)
138 PRK13397 3-deoxy-7-phosphohept 90.3 2.9 6.2E-05 38.3 9.9 138 2-181 96-249 (250)
139 PRK07259 dihydroorotate dehydr 90.2 3.1 6.7E-05 37.9 10.2 56 13-77 135-194 (301)
140 TIGR02109 PQQ_syn_pqqE coenzym 90.2 6.8 0.00015 36.3 12.6 112 6-156 55-180 (358)
141 TIGR02666 moaA molybdenum cofa 90.0 9.1 0.0002 35.2 13.2 115 5-158 60-191 (334)
142 cd00331 IGPS Indole-3-glycerol 90.0 2.4 5.3E-05 36.5 8.9 96 21-164 108-208 (217)
143 PLN02321 2-isopropylmalate syn 90.0 3.4 7.4E-05 42.4 11.2 126 22-178 211-341 (632)
144 cd04740 DHOD_1B_like Dihydroor 89.9 1.7 3.7E-05 39.3 8.2 74 53-156 103-186 (296)
145 cd02803 OYE_like_FMN_family Ol 89.9 0.65 1.4E-05 42.4 5.5 107 20-161 191-315 (327)
146 cd04730 NPD_like 2-Nitropropan 89.8 3 6.4E-05 36.1 9.3 64 53-158 68-131 (236)
147 TIGR00737 nifR3_yhdG putative 89.8 2.2 4.8E-05 39.3 9.0 114 11-162 107-227 (319)
148 PRK14042 pyruvate carboxylase 89.7 3 6.4E-05 42.5 10.5 97 52-179 96-192 (596)
149 PRK08898 coproporphyrinogen II 89.6 3.8 8.3E-05 39.0 10.7 123 4-154 73-206 (394)
150 PRK12999 pyruvate carboxylase; 89.6 3.2 7E-05 45.3 11.2 102 53-179 628-729 (1146)
151 TIGR01211 ELP3 histone acetylt 89.6 2.5 5.3E-05 42.4 9.6 131 2-157 131-296 (522)
152 PF01261 AP_endonuc_2: Xylose 89.5 1.2 2.7E-05 36.5 6.4 148 58-217 1-171 (213)
153 PRK11858 aksA trans-homoaconit 89.4 5 0.00011 38.2 11.3 94 55-179 78-183 (378)
154 cd02801 DUS_like_FMN Dihydrour 89.4 2.1 4.6E-05 36.8 8.0 76 11-92 99-180 (231)
155 PRK11320 prpB 2-methylisocitra 89.1 2.6 5.5E-05 39.3 8.8 117 28-180 72-202 (292)
156 PRK01130 N-acetylmannosamine-6 88.8 2.8 6E-05 36.4 8.4 97 21-162 105-207 (221)
157 PRK13125 trpA tryptophan synth 88.7 15 0.00033 32.6 13.3 117 53-205 89-210 (244)
158 cd02810 DHOD_DHPD_FMN Dihydroo 88.7 3.4 7.4E-05 37.1 9.2 79 53-158 112-198 (289)
159 PRK04302 triosephosphate isome 88.7 4.8 0.0001 35.3 9.9 116 54-204 74-197 (223)
160 cd04724 Tryptophan_synthase_al 88.5 9.5 0.00021 34.0 11.8 52 41-99 83-134 (242)
161 PRK05718 keto-hydroxyglutarate 88.3 2 4.4E-05 38.0 7.3 116 25-186 7-134 (212)
162 PRK05301 pyrroloquinoline quin 88.3 6.8 0.00015 36.7 11.2 110 8-156 66-189 (378)
163 cd00331 IGPS Indole-3-glycerol 88.2 16 0.00035 31.5 13.1 110 56-204 85-196 (217)
164 PLN02591 tryptophan synthase 88.2 1.5 3.4E-05 39.8 6.6 62 33-101 77-138 (250)
165 PLN03228 methylthioalkylmalate 88.2 3.2 7E-05 41.4 9.4 93 57-179 169-277 (503)
166 PF00290 Trp_syntA: Tryptophan 88.0 9 0.0002 35.1 11.5 106 32-177 85-191 (259)
167 PRK06801 hypothetical protein; 88.0 20 0.00044 33.2 13.9 116 54-186 86-209 (286)
168 cd02801 DUS_like_FMN Dihydrour 87.9 5.8 0.00013 34.0 9.8 81 52-158 67-160 (231)
169 PRK00164 moaA molybdenum cofac 87.8 5.6 0.00012 36.5 10.1 82 7-101 68-165 (331)
170 cd02803 OYE_like_FMN_family Ol 87.7 11 0.00025 34.3 12.1 25 134-158 226-250 (327)
171 TIGR03700 mena_SCO4494 putativ 87.6 7.7 0.00017 36.4 11.1 72 54-151 149-232 (351)
172 cd07948 DRE_TIM_HCS Saccharomy 87.6 5.9 0.00013 36.0 10.0 94 55-179 74-179 (262)
173 cd00953 KDG_aldolase KDG (2-ke 87.5 3.8 8.3E-05 37.2 8.8 110 50-190 18-131 (279)
174 cd07941 DRE_TIM_LeuA3 Desulfob 87.2 5.4 0.00012 36.1 9.6 94 56-177 82-187 (273)
175 PRK07998 gatY putative fructos 87.2 19 0.00041 33.5 13.2 177 10-208 18-229 (283)
176 PRK08508 biotin synthase; Prov 87.2 15 0.00032 33.5 12.4 113 17-155 39-185 (279)
177 PRK07259 dihydroorotate dehydr 87.1 2.7 5.9E-05 38.2 7.6 75 53-156 105-189 (301)
178 TIGR03699 mena_SCO4550 menaqui 87.0 5.7 0.00012 36.8 9.8 46 55-100 143-200 (340)
179 PF09370 TIM-br_sig_trns: TIM- 86.9 1.8 4E-05 40.0 6.4 70 53-157 96-178 (268)
180 cd00946 FBP_aldolase_IIA Class 86.9 16 0.00034 35.0 12.8 135 25-175 78-230 (345)
181 TIGR00423 radical SAM domain p 86.8 12 0.00025 34.4 11.6 46 54-99 106-163 (309)
182 PRK05926 hypothetical protein; 86.8 7.7 0.00017 37.1 10.7 115 13-153 123-253 (370)
183 PRK12344 putative alpha-isopro 86.5 5.2 0.00011 40.0 9.7 97 55-179 88-196 (524)
184 CHL00200 trpA tryptophan synth 86.4 13 0.00028 34.0 11.5 65 32-103 89-153 (263)
185 PRK09989 hypothetical protein; 86.3 1.4 3E-05 38.9 5.2 43 53-99 16-58 (258)
186 smart00642 Aamy Alpha-amylase 86.2 1.9 4.1E-05 36.5 5.7 50 56-105 23-94 (166)
187 cd07942 DRE_TIM_LeuA Mycobacte 86.2 11 0.00024 34.8 11.1 130 22-180 121-265 (284)
188 PRK13957 indole-3-glycerol-pho 85.9 8.8 0.00019 35.0 10.2 110 58-207 117-228 (247)
189 PRK05927 hypothetical protein; 85.8 10 0.00023 35.9 11.0 53 53-107 145-209 (350)
190 PRK04302 triosephosphate isome 85.8 12 0.00026 32.8 10.7 91 21-157 101-203 (223)
191 TIGR01858 tag_bisphos_ald clas 85.5 19 0.00041 33.4 12.3 137 56-208 86-230 (282)
192 cd02940 DHPD_FMN Dihydropyrimi 85.3 7.8 0.00017 35.5 9.6 60 11-77 144-205 (299)
193 PRK05718 keto-hydroxyglutarate 85.3 5.7 0.00012 35.2 8.5 98 17-164 91-190 (212)
194 TIGR03581 EF_0839 conserved hy 85.2 12 0.00026 34.0 10.5 45 134-178 187-233 (236)
195 PRK10415 tRNA-dihydrouridine s 85.2 4.1 8.9E-05 37.9 7.9 80 8-93 106-192 (321)
196 cd04740 DHOD_1B_like Dihydroor 85.1 8 0.00017 35.0 9.5 56 14-76 133-190 (296)
197 PLN02446 (5-phosphoribosyl)-5- 85.0 7.3 0.00016 35.9 9.2 48 140-189 95-142 (262)
198 cd07945 DRE_TIM_CMS Leptospira 84.9 8.9 0.00019 35.2 9.8 97 55-179 77-185 (280)
199 COG2896 MoaA Molybdenum cofact 84.9 9.1 0.0002 36.3 10.0 113 20-158 45-189 (322)
200 cd02932 OYE_YqiM_FMN Old yello 84.8 1.7 3.7E-05 40.3 5.2 78 13-92 197-287 (336)
201 PRK12330 oxaloacetate decarbox 84.8 6.8 0.00015 39.2 9.6 143 5-182 111-258 (499)
202 PF02548 Pantoate_transf: Keto 84.7 7.8 0.00017 35.8 9.3 77 59-158 30-117 (261)
203 PRK09997 hydroxypyruvate isome 84.6 1.4 3E-05 38.9 4.3 48 46-99 11-58 (258)
204 TIGR00735 hisF imidazoleglycer 84.6 12 0.00026 33.4 10.3 99 53-189 31-130 (254)
205 PRK15108 biotin synthase; Prov 84.5 7 0.00015 36.8 9.1 133 15-176 73-207 (345)
206 PRK13523 NADPH dehydrogenase N 84.2 25 0.00054 33.1 12.7 116 22-158 82-249 (337)
207 TIGR00736 nifR3_rel_arch TIM-b 84.2 21 0.00045 32.1 11.7 121 19-179 53-189 (231)
208 TIGR01182 eda Entner-Doudoroff 84.0 4.7 0.0001 35.7 7.3 68 53-157 21-88 (204)
209 COG2513 PrpB PEP phosphonomuta 84.0 9.4 0.0002 35.8 9.6 124 21-180 65-202 (289)
210 PF01081 Aldolase: KDPG and KH 83.9 3.9 8.4E-05 36.0 6.7 69 52-157 20-88 (196)
211 PRK12737 gatY tagatose-bisphos 83.8 28 0.0006 32.3 12.6 109 55-180 87-202 (284)
212 TIGR01501 MthylAspMutase methy 83.8 4.8 0.0001 33.4 6.9 14 134-147 120-133 (134)
213 cd07938 DRE_TIM_HMGL 3-hydroxy 83.3 9.6 0.00021 34.7 9.3 99 56-179 77-187 (274)
214 PRK08185 hypothetical protein; 83.3 33 0.00072 31.8 12.9 135 56-208 82-228 (283)
215 COG0635 HemN Coproporphyrinoge 83.3 8.3 0.00018 37.4 9.3 126 4-157 87-225 (416)
216 PRK08318 dihydropyrimidine deh 83.2 23 0.00049 33.9 12.2 59 11-77 144-205 (420)
217 smart00481 POLIIIAc DNA polyme 83.2 2.9 6.3E-05 29.4 4.7 46 51-99 14-59 (67)
218 PRK09195 gatY tagatose-bisphos 83.2 39 0.00085 31.4 14.3 138 56-208 88-232 (284)
219 cd02930 DCR_FMN 2,4-dienoyl-Co 83.2 33 0.00071 32.2 13.1 22 134-155 222-243 (353)
220 TIGR01859 fruc_bis_ald_ fructo 83.1 17 0.00037 33.4 10.9 133 56-208 88-230 (282)
221 PRK13802 bifunctional indole-3 83.0 16 0.00035 38.0 11.7 111 58-207 126-238 (695)
222 TIGR03239 GarL 2-dehydro-3-deo 82.9 5.6 0.00012 35.9 7.5 68 56-156 24-91 (249)
223 PRK13523 NADPH dehydrogenase N 82.9 2.3 4.9E-05 40.0 5.2 125 15-182 187-325 (337)
224 PF00218 IGPS: Indole-3-glycer 82.4 11 0.00025 34.4 9.4 147 22-207 69-236 (254)
225 cd06557 KPHMT-like Ketopantoat 82.3 5.4 0.00012 36.4 7.2 76 60-158 27-113 (254)
226 PRK07114 keto-hydroxyglutarate 82.2 3.2 6.9E-05 37.2 5.6 91 26-157 8-99 (222)
227 PRK09389 (R)-citramalate synth 82.2 19 0.00041 35.7 11.5 96 54-180 75-182 (488)
228 TIGR00587 nfo apurinic endonuc 82.1 23 0.00049 31.9 11.1 148 53-214 12-181 (274)
229 PRK02083 imidazole glycerol ph 81.9 15 0.00032 32.6 9.8 99 53-189 31-130 (253)
230 PRK07709 fructose-bisphosphate 81.9 27 0.00059 32.4 11.7 183 9-208 17-233 (285)
231 COG0413 PanB Ketopantoate hydr 81.8 9.1 0.0002 35.5 8.5 87 54-157 96-182 (268)
232 CHL00073 chlN photochlorophyll 81.6 23 0.0005 35.1 11.8 149 26-219 253-407 (457)
233 PF01301 Glyco_hydro_35: Glyco 81.6 3.4 7.4E-05 38.5 5.8 52 52-103 24-85 (319)
234 cd04731 HisF The cyclase subun 81.6 13 0.00028 32.6 9.2 96 53-189 28-127 (243)
235 PF04476 DUF556: Protein of un 81.5 34 0.00074 31.2 11.9 137 5-179 81-234 (235)
236 PRK13125 trpA tryptophan synth 81.5 8.4 0.00018 34.3 8.0 22 139-161 197-218 (244)
237 cd04731 HisF The cyclase subun 81.4 8.8 0.00019 33.6 8.1 77 10-93 97-191 (243)
238 TIGR01769 GGGP geranylgeranylg 81.2 4.7 0.0001 35.7 6.3 68 52-155 134-204 (205)
239 PRK10415 tRNA-dihydrouridine s 81.1 21 0.00046 33.2 10.9 94 59-179 84-193 (321)
240 TIGR00977 LeuA_rel 2-isopropyl 80.9 7.9 0.00017 38.8 8.4 97 55-179 84-192 (526)
241 PRK10550 tRNA-dihydrouridine s 80.6 15 0.00033 34.2 9.7 78 9-93 105-192 (312)
242 cd04726 KGPDC_HPS 3-Keto-L-gul 80.5 13 0.00029 31.2 8.6 80 3-97 24-106 (202)
243 cd02812 PcrB_like PcrB_like pr 80.4 5.8 0.00013 35.5 6.6 75 50-162 133-209 (219)
244 PRK02227 hypothetical protein; 80.3 28 0.00061 31.7 11.0 140 5-180 81-234 (238)
245 PRK13586 1-(5-phosphoribosyl)- 80.3 14 0.00031 32.9 9.1 93 57-187 35-127 (232)
246 PRK15452 putative protease; Pr 80.2 35 0.00075 33.6 12.4 63 18-93 43-107 (443)
247 cd02932 OYE_YqiM_FMN Old yello 80.2 25 0.00054 32.6 11.0 23 134-156 239-261 (336)
248 cd08205 RuBisCO_IV_RLP Ribulos 80.2 4.6 0.0001 38.6 6.3 83 52-157 146-231 (367)
249 cd04723 HisA_HisF Phosphoribos 80.2 12 0.00027 33.0 8.6 101 53-192 36-136 (233)
250 PRK06015 keto-hydroxyglutarate 80.1 8.1 0.00017 34.2 7.3 68 53-157 17-84 (201)
251 cd00947 TBP_aldolase_IIB Tagat 80.0 50 0.0011 30.5 14.9 135 56-208 83-226 (276)
252 PRK12677 xylose isomerase; Pro 80.0 8.3 0.00018 37.0 8.0 144 53-204 32-206 (384)
253 PF13714 PEP_mutase: Phosphoen 79.9 3.4 7.3E-05 37.2 5.0 127 21-180 56-191 (238)
254 PRK06552 keto-hydroxyglutarate 79.9 13 0.00027 33.0 8.5 118 26-186 6-135 (213)
255 PRK08610 fructose-bisphosphate 79.6 33 0.00071 31.9 11.5 183 9-208 17-233 (286)
256 PRK08445 hypothetical protein; 79.4 25 0.00055 33.2 10.9 46 54-99 143-200 (348)
257 PRK08444 hypothetical protein; 79.3 34 0.00073 32.5 11.7 85 21-107 113-213 (353)
258 TIGR00977 LeuA_rel 2-isopropyl 79.1 18 0.00039 36.3 10.3 119 24-173 125-247 (526)
259 PRK10550 tRNA-dihydrouridine s 79.1 29 0.00063 32.3 11.1 75 59-158 82-170 (312)
260 cd02874 GH18_CFLE_spore_hydrol 79.1 7.4 0.00016 35.4 7.0 67 23-92 47-128 (313)
261 PRK11815 tRNA-dihydrouridine s 79.1 11 0.00024 35.3 8.3 80 55-158 80-173 (333)
262 PF04131 NanE: Putative N-acet 79.0 11 0.00025 33.3 7.8 90 21-157 79-174 (192)
263 TIGR01361 DAHP_synth_Bsub phos 78.9 41 0.00088 30.6 11.7 158 20-179 75-257 (260)
264 PRK07028 bifunctional hexulose 78.5 28 0.00061 33.5 11.1 128 22-193 95-229 (430)
265 PRK10558 alpha-dehydro-beta-de 78.5 8.2 0.00018 35.0 7.1 91 22-157 9-99 (256)
266 cd04739 DHOD_like Dihydroorota 78.1 9.7 0.00021 35.5 7.6 77 53-158 113-197 (325)
267 TIGR03128 RuMP_HxlA 3-hexulose 77.7 41 0.00088 28.5 10.8 33 140-175 170-202 (206)
268 TIGR00010 hydrolase, TatD fami 77.7 22 0.00048 30.3 9.3 153 20-191 39-203 (252)
269 TIGR00973 leuA_bact 2-isopropy 77.6 22 0.00048 35.3 10.3 95 54-179 78-184 (494)
270 PRK14847 hypothetical protein; 77.5 39 0.00084 32.2 11.5 125 23-177 153-293 (333)
271 PRK13585 1-(5-phosphoribosyl)- 77.4 21 0.00045 31.1 9.1 97 53-187 33-130 (241)
272 COG1060 ThiH Thiamine biosynth 77.3 4.6 9.9E-05 38.8 5.3 121 14-153 86-216 (370)
273 cd02933 OYE_like_FMN Old yello 77.3 65 0.0014 30.3 13.4 81 57-155 157-260 (338)
274 COG0119 LeuA Isopropylmalate/h 76.9 36 0.00078 33.2 11.4 125 20-173 116-240 (409)
275 PRK07360 FO synthase subunit 2 76.9 46 0.001 31.5 11.9 138 53-216 161-331 (371)
276 PRK10128 2-keto-3-deoxy-L-rham 76.7 10 0.00023 34.7 7.3 89 22-155 8-96 (267)
277 PRK09196 fructose-1,6-bisphosp 76.7 7.6 0.00016 37.2 6.5 121 23-158 125-279 (347)
278 TIGR01235 pyruv_carbox pyruvat 76.5 8.5 0.00019 42.1 7.6 114 18-160 622-768 (1143)
279 TIGR00737 nifR3_yhdG putative 76.3 37 0.0008 31.3 10.9 100 53-180 76-192 (319)
280 TIGR01304 IMP_DH_rel_2 IMP deh 76.3 24 0.00051 34.0 9.8 71 19-97 117-191 (369)
281 PRK13307 bifunctional formalde 76.2 43 0.00094 32.5 11.6 38 139-179 341-378 (391)
282 PF01212 Beta_elim_lyase: Beta 76.0 2.7 5.8E-05 38.7 3.2 52 16-73 140-193 (290)
283 PF04055 Radical_SAM: Radical 75.9 20 0.00043 27.7 7.8 81 5-97 46-143 (166)
284 TIGR00167 cbbA ketose-bisphosp 75.9 46 0.00099 30.9 11.3 138 55-208 90-236 (288)
285 cd04733 OYE_like_2_FMN Old yel 75.7 5.1 0.00011 37.3 5.0 61 15-76 194-260 (338)
286 cd00945 Aldolase_Class_I Class 75.4 16 0.00034 29.9 7.5 102 52-189 13-122 (201)
287 cd01335 Radical_SAM Radical SA 75.2 39 0.00084 26.7 10.7 88 4-103 44-147 (204)
288 cd08574 GDPD_GDE_2_3_6 Glycero 75.2 21 0.00046 31.8 8.7 19 139-157 234-252 (252)
289 cd02940 DHPD_FMN Dihydropyrimi 75.0 24 0.00051 32.3 9.2 74 53-155 114-199 (299)
290 cd06543 GH18_PF-ChiA-like PF-C 74.9 8.6 0.00019 35.6 6.3 74 20-93 53-136 (294)
291 cd02931 ER_like_FMN Enoate red 74.8 18 0.00039 34.5 8.6 25 134-158 250-274 (382)
292 PF10566 Glyco_hydro_97: Glyco 74.7 6.1 0.00013 36.6 5.2 109 52-185 32-152 (273)
293 cd00959 DeoC 2-deoxyribose-5-p 74.4 4.9 0.00011 34.7 4.3 70 58-156 75-151 (203)
294 cd04729 NanE N-acetylmannosami 74.3 19 0.00041 31.2 8.0 18 139-156 189-206 (219)
295 KOG2949 Ketopantoate hydroxyme 74.2 18 0.00038 33.5 7.9 98 40-157 109-206 (306)
296 PRK00311 panB 3-methyl-2-oxobu 74.2 14 0.0003 34.0 7.4 115 61-201 31-195 (264)
297 PRK05286 dihydroorotate dehydr 73.9 28 0.00061 32.7 9.6 80 53-158 155-247 (344)
298 PRK13209 L-xylulose 5-phosphat 73.6 17 0.00037 32.1 7.7 84 19-102 55-159 (283)
299 cd02809 alpha_hydroxyacid_oxid 73.6 32 0.0007 31.5 9.7 103 23-159 83-203 (299)
300 PLN02428 lipoic acid synthase 73.5 24 0.00051 33.8 9.0 75 55-155 195-281 (349)
301 PF00128 Alpha-amylase: Alpha 73.3 5.2 0.00011 34.6 4.2 51 54-104 6-75 (316)
302 PRK07896 nicotinate-nucleotide 73.2 19 0.00042 33.6 8.1 116 24-189 126-252 (289)
303 PF01116 F_bP_aldolase: Fructo 73.0 57 0.0012 30.2 11.2 154 10-179 17-203 (287)
304 TIGR01235 pyruv_carbox pyruvat 73.0 32 0.0007 37.8 10.9 103 52-179 625-727 (1143)
305 TIGR03849 arch_ComA phosphosul 72.7 75 0.0016 29.0 11.6 153 21-227 71-236 (237)
306 PRK12999 pyruvate carboxylase; 72.6 26 0.00056 38.5 10.1 99 53-180 692-790 (1146)
307 TIGR00433 bioB biotin syntheta 72.5 35 0.00075 30.5 9.5 45 55-99 123-176 (296)
308 PRK07084 fructose-bisphosphate 72.5 63 0.0014 30.7 11.4 188 10-214 24-254 (321)
309 PRK08318 dihydropyrimidine deh 72.4 22 0.00048 34.0 8.6 74 53-155 114-199 (420)
310 TIGR01768 GGGP-family geranylg 72.4 19 0.00041 32.4 7.7 69 51-155 134-207 (223)
311 PRK12738 kbaY tagatose-bisphos 72.3 58 0.0013 30.3 11.1 154 10-181 18-203 (286)
312 COG0269 SgbH 3-hexulose-6-phos 72.2 62 0.0013 29.2 10.8 116 15-177 87-210 (217)
313 PLN02617 imidazole glycerol ph 72.2 24 0.00052 35.6 9.1 110 59-189 274-393 (538)
314 TIGR01515 branching_enzym alph 72.1 7.7 0.00017 39.3 5.7 50 55-104 160-229 (613)
315 PF02548 Pantoate_transf: Keto 72.0 14 0.0003 34.2 6.8 85 56-157 99-183 (261)
316 PRK12857 fructose-1,6-bisphosp 72.0 62 0.0013 30.0 11.1 136 56-208 88-232 (284)
317 PF07071 DUF1341: Protein of u 71.9 12 0.00025 33.8 6.1 71 54-154 137-207 (218)
318 PRK15108 biotin synthase; Prov 71.8 84 0.0018 29.6 12.2 68 21-99 111-189 (345)
319 PRK13758 anaerobic sulfatase-m 71.8 58 0.0013 30.2 11.1 13 17-29 38-50 (370)
320 cd01011 nicotinamidase Nicotin 71.7 12 0.00026 32.0 6.1 65 26-97 129-195 (196)
321 cd06545 GH18_3CO4_chitinase Th 71.5 13 0.00028 33.0 6.4 71 21-92 46-126 (253)
322 PRK01122 potassium-transportin 71.4 11 0.00024 39.1 6.6 61 20-96 447-509 (679)
323 PRK13399 fructose-1,6-bisphosp 71.3 8.5 0.00018 36.9 5.4 121 23-158 125-279 (347)
324 TIGR02631 xylA_Arthro xylose i 71.2 9.4 0.0002 36.6 5.8 47 53-99 33-86 (382)
325 PTZ00331 alpha/beta hydrolase; 71.2 9.7 0.00021 33.2 5.4 64 28-98 139-204 (212)
326 PF01791 DeoC: DeoC/LacD famil 71.2 5 0.00011 35.2 3.7 111 21-153 112-225 (236)
327 cd00381 IMPDH IMPDH: The catal 71.2 31 0.00066 32.3 9.1 70 53-156 94-163 (325)
328 PRK09427 bifunctional indole-3 71.1 21 0.00045 35.3 8.2 93 58-189 125-218 (454)
329 PRK09234 fbiC FO synthase; Rev 71.0 57 0.0012 34.8 11.9 73 53-151 626-710 (843)
330 cd02875 GH18_chitobiase Chitob 71.0 11 0.00023 35.7 6.1 47 24-72 67-119 (358)
331 PRK02083 imidazole glycerol ph 71.0 24 0.00052 31.3 8.0 129 9-180 99-248 (253)
332 PLN02389 biotin synthase 71.0 56 0.0012 31.4 11.0 51 54-106 177-236 (379)
333 PRK05835 fructose-bisphosphate 70.9 70 0.0015 30.2 11.3 180 9-205 16-230 (307)
334 COG4130 Predicted sugar epimer 69.8 5.7 0.00012 36.3 3.7 47 53-99 18-67 (272)
335 TIGR03822 AblA_like_2 lysine-2 69.8 85 0.0018 29.2 11.6 156 5-190 137-308 (321)
336 PRK12313 glycogen branching en 69.7 10 0.00022 38.5 5.9 51 54-104 173-243 (633)
337 COG5016 Pyruvate/oxaloacetate 69.7 11 0.00025 37.1 6.0 76 18-93 95-197 (472)
338 cd04734 OYE_like_3_FMN Old yel 69.5 11 0.00024 35.4 5.7 65 12-77 183-254 (343)
339 cd04747 OYE_like_5_FMN Old yel 69.5 29 0.00063 33.1 8.7 23 133-155 232-254 (361)
340 PRK14010 potassium-transportin 69.5 13 0.00028 38.5 6.7 63 19-97 442-506 (673)
341 TIGR00742 yjbN tRNA dihydrouri 69.2 41 0.00089 31.5 9.4 81 8-92 96-191 (318)
342 COG0329 DapA Dihydrodipicolina 69.2 96 0.0021 28.6 13.5 142 53-221 26-177 (299)
343 cd06556 ICL_KPHMT Members of t 69.1 36 0.00079 30.7 8.8 139 61-223 28-216 (240)
344 PRK05286 dihydroorotate dehydr 68.9 11 0.00024 35.3 5.7 67 3-77 168-250 (344)
345 PRK07565 dihydroorotate dehydr 68.9 29 0.00062 32.3 8.4 26 53-78 178-203 (334)
346 PRK13587 1-(5-phosphoribosyl)- 68.9 31 0.00067 30.7 8.2 87 9-103 101-201 (234)
347 PRK14024 phosphoribosyl isomer 68.8 25 0.00054 31.2 7.6 75 9-92 100-187 (241)
348 PF00977 His_biosynth: Histidi 68.8 11 0.00024 33.2 5.4 94 61-192 38-132 (229)
349 TIGR02104 pulA_typeI pullulana 68.6 9.5 0.00021 38.5 5.5 52 53-104 165-252 (605)
350 TIGR01302 IMP_dehydrog inosine 68.5 15 0.00032 35.9 6.6 67 58-157 279-357 (450)
351 PRK06096 molybdenum transport 68.3 20 0.00043 33.3 7.1 42 139-189 199-242 (284)
352 COG0134 TrpC Indole-3-glycerol 68.1 47 0.001 30.6 9.4 111 58-207 122-234 (254)
353 PRK13210 putative L-xylulose 5 67.9 25 0.00054 30.9 7.5 83 20-102 51-154 (284)
354 TIGR02311 HpaI 2,4-dihydroxyhe 67.9 26 0.00056 31.5 7.6 69 55-156 23-91 (249)
355 COG3010 NanE Putative N-acetyl 67.8 28 0.00061 31.5 7.6 90 22-157 115-210 (229)
356 PRK07709 fructose-bisphosphate 67.5 30 0.00066 32.1 8.1 99 22-158 119-235 (285)
357 cd04722 TIM_phosphate_binding 67.4 12 0.00026 30.0 4.9 41 58-99 77-119 (200)
358 TIGR01037 pyrD_sub1_fam dihydr 67.3 35 0.00076 30.9 8.4 64 65-157 118-190 (300)
359 COG0119 LeuA Isopropylmalate/h 67.2 82 0.0018 30.7 11.4 94 53-177 77-182 (409)
360 PRK06267 hypothetical protein; 67.1 61 0.0013 30.5 10.2 53 77-155 149-201 (350)
361 PLN02951 Molybderin biosynthes 67.1 95 0.0021 29.6 11.6 114 17-157 89-206 (373)
362 PRK08255 salicylyl-CoA 5-hydro 67.0 39 0.00085 35.1 9.7 24 134-157 636-659 (765)
363 PRK08255 salicylyl-CoA 5-hydro 67.0 17 0.00036 37.8 7.0 131 13-183 594-738 (765)
364 PRK00278 trpC indole-3-glycero 66.9 47 0.001 30.0 9.1 98 19-164 145-247 (260)
365 PRK13587 1-(5-phosphoribosyl)- 66.9 51 0.0011 29.3 9.2 88 64-190 44-132 (234)
366 PLN02447 1,4-alpha-glucan-bran 66.7 11 0.00024 39.6 5.6 50 55-104 254-323 (758)
367 COG0535 Predicted Fe-S oxidore 66.6 67 0.0015 28.7 10.0 115 7-157 68-194 (347)
368 PLN02591 tryptophan synthase 66.6 45 0.00098 30.3 8.9 62 23-96 95-158 (250)
369 TIGR01521 FruBisAldo_II_B fruc 66.3 19 0.00042 34.5 6.7 111 8-153 93-272 (347)
370 TIGR03551 F420_cofH 7,8-dideme 66.3 14 0.0003 34.4 5.7 111 16-151 68-194 (343)
371 PF01207 Dus: Dihydrouridine s 66.2 40 0.00086 31.2 8.7 104 52-180 66-183 (309)
372 PRK06978 nicotinate-nucleotide 66.1 28 0.00061 32.6 7.6 115 24-189 132-255 (294)
373 TIGR03234 OH-pyruv-isom hydrox 66.1 30 0.00064 30.2 7.5 78 22-101 40-143 (254)
374 PRK09997 hydroxypyruvate isome 66.0 46 0.00099 29.2 8.7 78 22-101 41-144 (258)
375 TIGR00970 leuA_yeast 2-isoprop 66.0 86 0.0019 31.8 11.6 131 22-180 146-293 (564)
376 PRK11815 tRNA-dihydrouridine s 65.9 27 0.00058 32.7 7.5 65 8-75 106-174 (333)
377 COG1038 PycA Pyruvate carboxyl 65.9 8.3 0.00018 41.2 4.5 69 22-99 68-138 (1149)
378 PF01136 Peptidase_U32: Peptid 65.6 42 0.00092 29.0 8.3 33 53-95 3-35 (233)
379 PRK02261 methylaspartate mutas 65.6 24 0.00052 29.0 6.4 43 54-96 71-114 (137)
380 cd08210 RLP_RrRLP Ribulose bis 65.5 21 0.00046 34.2 6.8 114 53-189 142-286 (364)
381 TIGR01497 kdpB K+-transporting 65.5 18 0.00038 37.6 6.7 61 20-96 448-510 (675)
382 cd04738 DHOD_2_like Dihydrooro 65.4 23 0.0005 32.9 7.0 68 3-78 159-242 (327)
383 cd04735 OYE_like_4_FMN Old yel 65.3 9 0.00019 36.0 4.3 22 55-76 238-259 (353)
384 PRK06256 biotin synthase; Vali 65.2 47 0.001 30.5 8.9 113 17-155 90-235 (336)
385 PRK00230 orotidine 5'-phosphat 65.1 20 0.00044 31.7 6.2 48 53-103 13-62 (230)
386 PF13380 CoA_binding_2: CoA bi 65.1 9.1 0.0002 30.3 3.7 41 52-98 66-106 (116)
387 PRK07998 gatY putative fructos 64.8 38 0.00083 31.5 8.2 103 22-158 116-231 (283)
388 TIGR01182 eda Entner-Doudoroff 64.7 9.3 0.0002 33.8 4.0 98 15-162 82-181 (204)
389 PF01791 DeoC: DeoC/LacD famil 64.5 8.6 0.00019 33.7 3.8 103 56-180 80-189 (236)
390 PF05913 DUF871: Bacterial pro 64.4 10 0.00022 36.3 4.5 150 33-221 2-197 (357)
391 PRK07114 keto-hydroxyglutarate 64.4 9 0.0002 34.3 3.9 60 15-92 93-154 (222)
392 PF01081 Aldolase: KDPG and KH 64.3 5.3 0.00012 35.1 2.4 94 16-158 83-178 (196)
393 PRK09240 thiH thiamine biosynt 64.2 85 0.0018 29.8 10.7 90 16-107 102-227 (371)
394 PF01261 AP_endonuc_2: Xylose 64.2 3.4 7.3E-05 33.9 1.1 83 21-103 27-134 (213)
395 PLN02540 methylenetetrahydrofo 64.1 57 0.0012 33.3 9.9 136 6-157 30-177 (565)
396 TIGR03471 HpnJ hopanoid biosyn 64.0 1.4E+02 0.0031 28.9 12.4 47 55-101 287-343 (472)
397 cd01310 TatD_DNAse TatD like p 64.0 56 0.0012 27.8 8.7 116 61-192 81-204 (251)
398 PRK09441 cytoplasmic alpha-amy 63.9 14 0.00031 36.0 5.5 52 54-105 24-105 (479)
399 PRK06852 aldolase; Validated 63.8 66 0.0014 30.3 9.6 145 7-166 96-274 (304)
400 PRK09250 fructose-bisphosphate 63.8 1.4E+02 0.003 28.9 11.9 85 7-94 129-230 (348)
401 PRK13398 3-deoxy-7-phosphohept 63.8 54 0.0012 30.0 8.9 136 2-179 108-259 (266)
402 cd06542 GH18_EndoS-like Endo-b 63.8 42 0.00091 29.5 8.0 90 2-92 25-139 (255)
403 TIGR02129 hisA_euk phosphoribo 63.7 58 0.0013 29.9 9.0 94 56-189 42-135 (253)
404 PRK09140 2-dehydro-3-deoxy-6-p 63.5 34 0.00074 30.0 7.3 69 53-157 23-91 (206)
405 cd04734 OYE_like_3_FMN Old yel 63.2 46 0.001 31.2 8.6 22 134-155 226-248 (343)
406 PRK00507 deoxyribose-phosphate 63.2 90 0.002 27.8 10.0 107 52-190 22-132 (221)
407 PF03644 Glyco_hydro_85: Glyco 63.1 9.4 0.0002 35.7 3.9 91 3-96 27-133 (311)
408 PRK10785 maltodextrin glucosid 63.0 15 0.00032 37.2 5.6 51 54-104 181-249 (598)
409 PRK12568 glycogen branching en 62.9 15 0.00033 38.5 5.7 103 54-157 272-409 (730)
410 cd04733 OYE_like_2_FMN Old yel 62.6 64 0.0014 30.0 9.4 25 134-158 234-258 (338)
411 TIGR01163 rpe ribulose-phospha 62.1 30 0.00065 29.1 6.6 41 52-92 11-53 (210)
412 TIGR00262 trpA tryptophan synt 62.0 87 0.0019 28.3 9.9 19 139-157 210-228 (256)
413 cd04726 KGPDC_HPS 3-Keto-L-gul 61.9 77 0.0017 26.5 9.0 24 140-164 170-193 (202)
414 cd00452 KDPG_aldolase KDPG and 61.9 47 0.001 28.2 7.8 22 139-161 154-175 (190)
415 COG1902 NemA NADH:flavin oxido 61.8 28 0.0006 33.4 6.9 84 58-155 155-257 (363)
416 TIGR01093 aroD 3-dehydroquinat 61.8 46 0.001 29.2 7.9 67 61-155 88-154 (228)
417 PRK07315 fructose-bisphosphate 61.7 1.4E+02 0.003 27.8 11.4 178 9-208 17-232 (293)
418 TIGR01334 modD putative molybd 61.7 28 0.00061 32.2 6.7 42 139-189 198-241 (277)
419 cd06522 GH25_AtlA-like AtlA is 61.5 49 0.0011 28.3 7.8 82 7-95 30-123 (192)
420 cd02072 Glm_B12_BD B12 binding 61.3 22 0.00047 29.3 5.4 43 54-96 67-110 (128)
421 PLN02858 fructose-bisphosphate 61.2 1.1E+02 0.0024 34.4 12.2 108 55-179 1182-1297(1378)
422 COG0413 PanB Ketopantoate hydr 61.2 32 0.00068 32.0 6.8 74 73-176 53-127 (268)
423 cd04739 DHOD_like Dihydroorota 61.1 47 0.001 30.9 8.2 50 21-78 149-201 (325)
424 cd08605 GDPD_GDE5_like_1_plant 61.1 25 0.00054 31.6 6.2 65 56-156 216-280 (282)
425 TIGR02495 NrdG2 anaerobic ribo 61.0 96 0.0021 25.7 11.8 33 4-38 62-94 (191)
426 PF07745 Glyco_hydro_53: Glyco 60.9 26 0.00056 33.3 6.5 137 53-202 25-193 (332)
427 TIGR00238 KamA family protein. 60.8 1E+02 0.0022 28.9 10.4 114 6-151 161-283 (331)
428 TIGR02403 trehalose_treC alpha 60.6 17 0.00037 36.3 5.5 51 54-104 29-98 (543)
429 PRK14332 (dimethylallyl)adenos 60.0 66 0.0014 31.4 9.3 97 127-223 177-282 (449)
430 PLN02424 ketopantoate hydroxym 59.8 40 0.00086 32.3 7.5 74 61-157 51-135 (332)
431 PRK09061 D-glutamate deacylase 59.8 38 0.00082 33.5 7.7 97 6-105 184-286 (509)
432 PRK09505 malS alpha-amylase; R 59.7 19 0.00041 37.4 5.8 52 54-105 232-316 (683)
433 PRK07329 hypothetical protein; 59.7 24 0.00051 31.4 5.7 77 20-99 164-244 (246)
434 PRK01033 imidazole glycerol ph 59.7 80 0.0017 28.3 9.2 94 53-184 31-125 (258)
435 PTZ00170 D-ribulose-5-phosphat 59.7 28 0.00062 30.8 6.2 76 51-158 18-97 (228)
436 PRK15447 putative protease; Pr 59.6 47 0.001 30.6 7.8 44 53-96 16-63 (301)
437 PRK12737 gatY tagatose-bisphos 59.5 71 0.0015 29.6 9.0 99 22-158 116-234 (284)
438 TIGR00542 hxl6Piso_put hexulos 59.4 45 0.00098 29.6 7.5 82 20-101 51-153 (279)
439 TIGR01858 tag_bisphos_ald clas 59.4 84 0.0018 29.2 9.4 103 22-158 114-232 (282)
440 cd06564 GH20_DspB_LnbB-like Gl 59.2 21 0.00045 33.1 5.5 27 77-103 78-104 (326)
441 PF02811 PHP: PHP domain; Int 59.2 14 0.0003 29.6 3.8 47 50-99 14-60 (175)
442 PRK10933 trehalose-6-phosphate 59.1 21 0.00046 35.8 5.9 51 54-104 35-104 (551)
443 PRK07428 nicotinate-nucleotide 58.9 19 0.00041 33.5 5.1 42 139-189 206-249 (288)
444 PRK08227 autoinducer 2 aldolas 58.7 1E+02 0.0022 28.4 9.7 143 7-165 78-234 (264)
445 PRK07565 dihydroorotate dehydr 58.7 61 0.0013 30.1 8.5 77 53-158 115-199 (334)
446 TIGR01304 IMP_DH_rel_2 IMP deh 58.5 1.5E+02 0.0033 28.5 11.3 106 55-205 102-212 (369)
447 TIGR03470 HpnH hopanoid biosyn 58.5 21 0.00046 33.0 5.4 68 22-92 150-227 (318)
448 COG0296 GlgB 1,4-alpha-glucan 58.1 20 0.00044 37.0 5.6 49 53-101 166-234 (628)
449 PRK06256 biotin synthase; Vali 58.0 54 0.0012 30.1 8.0 69 24-96 152-231 (336)
450 PRK09856 fructoselysine 3-epim 57.9 1.1E+02 0.0025 26.7 9.7 81 21-101 47-149 (275)
451 PF01487 DHquinase_I: Type I 3 57.8 1.3E+02 0.0027 26.1 10.9 84 54-158 9-97 (224)
452 cd04738 DHOD_2_like Dihydrooro 57.8 53 0.0012 30.5 8.0 81 53-158 146-238 (327)
453 PRK05402 glycogen branching en 57.7 21 0.00045 37.0 5.7 51 53-103 267-337 (726)
454 cd02931 ER_like_FMN Enoate red 57.6 57 0.0012 31.1 8.2 21 56-76 256-276 (382)
455 PRK14706 glycogen branching en 57.5 19 0.00042 36.9 5.4 49 55-103 171-239 (639)
456 TIGR00126 deoC deoxyribose-pho 57.4 99 0.0022 27.4 9.2 104 53-190 19-128 (211)
457 PLN02389 biotin synthase 57.4 1.3E+02 0.0029 28.9 10.7 130 16-176 114-249 (379)
458 PRK02412 aroD 3-dehydroquinate 57.1 74 0.0016 28.6 8.5 75 56-158 99-176 (253)
459 TIGR03581 EF_0839 conserved hy 57.1 74 0.0016 29.1 8.3 85 5-102 116-211 (236)
460 TIGR00676 fadh2 5,10-methylene 57.1 1.5E+02 0.0033 26.8 11.2 129 1-155 24-163 (272)
461 COG1891 Uncharacterized protei 57.0 13 0.00027 33.2 3.4 23 14-36 160-182 (235)
462 PRK08323 phenylhydantoinase; V 56.9 1.1E+02 0.0023 29.2 10.0 95 5-104 142-262 (459)
463 PF03205 MobB: Molybdopterin g 56.8 18 0.00039 29.6 4.2 42 147-188 55-99 (140)
464 cd00945 Aldolase_Class_I Class 56.7 1.1E+02 0.0023 24.9 11.3 133 19-180 11-170 (201)
465 PRK09248 putative hydrolase; V 56.5 11 0.00023 33.3 2.9 16 54-69 203-218 (246)
466 PF00857 Isochorismatase: Isoc 56.5 10 0.00022 30.9 2.6 64 28-98 105-170 (174)
467 PF03740 PdxJ: Pyridoxal phosp 56.3 13 0.00028 34.0 3.4 50 17-76 107-156 (239)
468 PRK08645 bifunctional homocyst 56.3 1.1E+02 0.0023 31.2 10.4 24 134-157 476-499 (612)
469 COG0502 BioB Biotin synthase a 56.2 1.4E+02 0.003 28.6 10.5 165 14-205 80-290 (335)
470 cd04732 HisA HisA. Phosphorib 56.0 29 0.00064 29.8 5.6 114 10-164 99-226 (234)
471 TIGR00126 deoC deoxyribose-pho 55.9 17 0.00036 32.3 4.1 93 22-153 107-201 (211)
472 TIGR00007 phosphoribosylformim 55.9 93 0.002 26.8 8.7 96 53-186 29-125 (230)
473 PLN02960 alpha-amylase 55.7 25 0.00054 37.7 5.9 49 55-103 420-488 (897)
474 TIGR02617 tnaA_trp_ase tryptop 55.7 24 0.00052 35.2 5.5 74 17-92 200-292 (467)
475 PLN02274 inosine-5'-monophosph 55.6 40 0.00086 33.7 7.1 19 140-158 364-382 (505)
476 CHL00200 trpA tryptophan synth 55.4 21 0.00046 32.6 4.8 20 139-158 214-233 (263)
477 cd06565 GH20_GcnA-like Glycosy 55.3 24 0.00052 32.5 5.1 66 17-103 13-82 (301)
478 TIGR02401 trehalose_TreY malto 55.3 24 0.00052 37.6 5.7 53 53-105 17-89 (825)
479 cd04735 OYE_like_4_FMN Old yel 55.3 1.2E+02 0.0025 28.6 9.8 25 134-158 233-257 (353)
480 PRK05301 pyrroloquinoline quin 55.3 29 0.00062 32.5 5.7 140 17-186 45-188 (378)
481 PRK08629 coproporphyrinogen II 55.2 70 0.0015 31.1 8.6 119 4-156 101-234 (433)
482 cd00598 GH18_chitinase-like Th 55.1 53 0.0011 27.4 6.8 73 20-92 48-135 (210)
483 cd00958 DhnA Class I fructose- 55.0 99 0.0022 26.8 8.8 95 21-155 109-213 (235)
484 COG0084 TatD Mg-dependent DNas 54.9 1.7E+02 0.0037 26.7 12.1 101 45-191 107-207 (256)
485 cd06525 GH25_Lyc-like Lyc mura 54.9 19 0.00041 30.4 4.1 84 7-96 26-119 (184)
486 cd00452 KDPG_aldolase KDPG and 54.8 1.3E+02 0.0029 25.4 10.1 94 19-155 14-123 (190)
487 PTZ00314 inosine-5'-monophosph 54.7 49 0.0011 32.9 7.5 70 56-158 294-375 (495)
488 PLN02460 indole-3-glycerol-pho 54.7 24 0.00051 33.8 5.1 115 54-207 191-315 (338)
489 cd06415 GH25_Cpl1-like Cpl-1 l 54.4 53 0.0012 28.0 6.9 81 7-96 26-123 (196)
490 cd00950 DHDPS Dihydrodipicolin 54.3 1.6E+02 0.0035 26.3 12.4 42 159-204 158-199 (284)
491 TIGR01859 fruc_bis_ald_ fructo 54.3 75 0.0016 29.3 8.2 103 23-158 117-232 (282)
492 cd08572 GDPD_GDE5_like Glycero 54.2 39 0.00085 30.9 6.4 67 54-156 225-291 (293)
493 PRK09454 ugpQ cytoplasmic glyc 54.0 49 0.0011 29.2 6.8 58 59-156 180-237 (249)
494 COG2896 MoaA Molybdenum cofact 54.0 1.1E+02 0.0024 29.1 9.4 88 53-157 47-163 (322)
495 TIGR00742 yjbN tRNA dihydrouri 53.8 60 0.0013 30.4 7.6 78 58-158 73-163 (318)
496 COG1874 LacA Beta-galactosidas 53.6 19 0.00042 37.4 4.6 61 35-99 15-86 (673)
497 KOG4175 Tryptophan synthase al 53.6 1.4E+02 0.003 27.3 9.5 74 22-102 81-156 (268)
498 PRK08610 fructose-bisphosphate 53.5 72 0.0016 29.7 8.0 98 22-157 119-234 (286)
499 TIGR02026 BchE magnesium-proto 53.2 1.2E+02 0.0026 29.8 10.0 76 55-155 287-372 (497)
500 cd04885 ACT_ThrD-I Tandem C-te 53.2 30 0.00064 24.4 4.3 46 51-97 9-66 (68)
No 1
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=100.00 E-value=2.9e-81 Score=556.60 Aligned_cols=206 Identities=25% Similarity=0.438 Sum_probs=195.8
Q ss_pred CCCcccEEEecCccccccChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC
Q 026320 1 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP 79 (240)
Q Consensus 1 ~g~yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~ 79 (240)
||+|||++||||||++|||++.|++||++||+|||+|||| ||||+|+.|+ ++++|+++||++||++|||||||++||
T Consensus 21 ~g~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~GGtl~E~~~~q~--~~~~Yl~~~k~lGf~~IEiS~G~~~i~ 98 (237)
T TIGR03849 21 CGDYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPGGTLFEIAHSKG--KFDEYLNECDELGFEAVEISDGSMEIS 98 (237)
T ss_pred hhhheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCCccHHHHHHHhh--hHHHHHHHHHHcCCCEEEEcCCccCCC
Confidence 6999999999999999999999999999999999999996 6999999998 999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-
Q 026320 80 EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD- 158 (240)
Q Consensus 80 ~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar- 158 (240)
+++|+++|++++++||+|+||+|+|++.. +. ..+++++|+++++||+|||++||||||
T Consensus 99 ~~~~~rlI~~~~~~g~~v~~EvG~K~~~~------~~---------------~~~~~~~i~~~~~~LeAGA~~ViiEarE 157 (237)
T TIGR03849 99 LEERCNLIERAKDNGFMVLSEVGKKSPEK------DS---------------ELTPDDRIKLINKDLEAGADYVIIEGRE 157 (237)
T ss_pred HHHHHHHHHHHHhCCCeEeccccccCCcc------cc---------------cCCHHHHHHHHHHHHHCCCcEEEEeehh
Confidence 99999999999999999999999998521 11 125899999999999999999999996
Q ss_pred -----ccccCCCCccHHHHHHHHhccCCCceEEecCCchhHHHHHHHhCCCcccc-cCCCCchhhhhhhCccCCCCc
Q 026320 159 -----DVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLECLRGRNLGKSH 229 (240)
Q Consensus 159 -----gi~d~~g~~r~d~v~~i~~~~~~~~lifEAP~k~qQ~~~I~~fG~~VNLg-I~~~dVl~LE~LR~~~~G~~~ 229 (240)
|||+++|+||+|++++|++++|++|||||||+|+||+|||++|||||||| |+|+||++|||||+|+||.+.
T Consensus 158 sg~~~Gi~~~~g~~r~d~v~~i~~~l~~eklifEAp~k~~q~~~I~~~G~~VNL~NI~~~evi~LE~LR~GLrgDT~ 234 (237)
T TIGR03849 158 SGKNIGLFDEKGNVKEDELDVLAENVDINKVIFEAPQKNQQVEFILKFGPDVNLGNIPPEEVISLETLRRGLRGDTF 234 (237)
T ss_pred cCCCcceeCCCCCCchHHHHHHHhhCChhcEEEECCCHHHHHHHHHHhCCCcccccCCHHHHHHHHHHhcccccccc
Confidence 89999999999999999999999999999999999999999999999997 999999999999999998665
No 2
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=100.00 E-value=1.2e-81 Score=561.31 Aligned_cols=204 Identities=41% Similarity=0.714 Sum_probs=170.3
Q ss_pred CCCcccEEEecCccccccChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC
Q 026320 1 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP 79 (240)
Q Consensus 1 ~g~yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~ 79 (240)
+|+|||++|||||||+|||++.|++||++||+|||+|||| |+||+|++|+ ++++|+++||++||++|||||||++||
T Consensus 34 ag~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~--~~~~yl~~~k~lGf~~IEiSdGti~l~ 111 (244)
T PF02679_consen 34 AGDYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQG--KFDEYLEECKELGFDAIEISDGTIDLP 111 (244)
T ss_dssp HGGG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT---HHHHHHHHHHCT-SEEEE--SSS---
T ss_pred hhhhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcC--hHHHHHHHHHHcCCCEEEecCCceeCC
Confidence 5899999999999999999999999999999999999996 7999999999 999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-
Q 026320 80 EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD- 158 (240)
Q Consensus 80 ~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar- 158 (240)
+++|+++|++++++||+|+||||+|++..+. ..|+++||+++++||+|||++||||||
T Consensus 112 ~~~r~~~I~~~~~~Gf~v~~EvG~K~~~~~~---------------------~~~~~~~i~~~~~dLeAGA~~ViiEarE 170 (244)
T PF02679_consen 112 EEERLRLIRKAKEEGFKVLSEVGKKDPESDF---------------------SLDPEELIEQAKRDLEAGADKVIIEARE 170 (244)
T ss_dssp HHHHHHHHHHHCCTTSEEEEEES-SSHHHHT---------------------T--CCHHHHHHHHHHHHTECEEEE--TT
T ss_pred HHHHHHHHHHHHHCCCEEeecccCCCchhcc---------------------cCCHHHHHHHHHHHHHCCCCEEEEeeec
Confidence 9999999999999999999999998753211 235789999999999999999999999
Q ss_pred ----ccccCCCCccHHHHHHHHhccCCCceEEecCCchhHHHHHHHhCCCcccc-cCCCCchhhhhhhCccCCC
Q 026320 159 ----DVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLECLRGRNLGK 227 (240)
Q Consensus 159 ----gi~d~~g~~r~d~v~~i~~~~~~~~lifEAP~k~qQ~~~I~~fG~~VNLg-I~~~dVl~LE~LR~~~~G~ 227 (240)
|||+++|+||+|++++|++++|++|||||||+|+||+|||++|||||||| |+|+||++|||||+|+||.
T Consensus 171 sG~~Gi~~~~g~~r~d~v~~i~~~~~~~~lifEAp~k~qq~~~I~~~G~~VNLgNI~~~eVl~LE~LR~GLrgD 244 (244)
T PF02679_consen 171 SGKGGIYDNDGEVRTDLVEKIIERLGLEKLIFEAPQKEQQEWFIKRFGPNVNLGNIAPSEVLALETLRRGLRGD 244 (244)
T ss_dssp T--STTB-TTS-B-HHHHHHHHTTS-GGGEEEE--SHHHHHHHHHHH-TT--EEEEEGGGHHHHHHHHCT-SGG
T ss_pred cCCCCccCCCCCccHHHHHHHHHhCCHhHEEEeCCCHhHHHHHHHHhCCCcCcccCCHHHHHHHHHHhccccCC
Confidence 99999999999999999999999999999999999999999999999998 9999999999999999983
No 3
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=100.00 E-value=7.8e-73 Score=496.55 Aligned_cols=208 Identities=25% Similarity=0.460 Sum_probs=196.8
Q ss_pred CCCcccEEEecCccccccChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC
Q 026320 1 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP 79 (240)
Q Consensus 1 ~g~yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~ 79 (240)
.|+|||++||||||++|.+++.+++||++||+||++|||| |+||+++.|+ ++++|+++|+++||++|||||||++|+
T Consensus 40 agdyVDfvKfgwGT~~Li~kd~V~ekid~y~e~~i~v~pGGtlfe~a~~~~--kvdeyl~e~~~lGfe~iEIS~G~i~m~ 117 (258)
T COG1809 40 AGDYVDFVKFGWGTSSLIDKDQVKEKIDMYKENDIYVFPGGTLFEIAYSQD--KVDEYLNEAKELGFEAIEISNGTIPMS 117 (258)
T ss_pred hhhheeeeeecccccccccHHHHHHHHHHHHHcCceecCCceEEEeehhcc--cHHHHHHHHHHcCccEEEecCCeeecc
Confidence 4899999999999999999999999999999999999995 8999999999 999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-
Q 026320 80 EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD- 158 (240)
Q Consensus 80 ~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar- 158 (240)
.++||++|+++.+.||+|+||+|+|.+. .++. .+++++++.+..|++|||++||+|||
T Consensus 118 ~eek~~lIe~a~d~Gf~vlsEvGkk~~e------~~~~---------------l~~~d~~k~i~~dvdaGa~~vi~eAre 176 (258)
T COG1809 118 TEEKCRLIERAVDEGFMVLSEVGKKDPE------SDSA---------------LSPDDRVKLINDDVDAGAEYVIAEARE 176 (258)
T ss_pred hHHHHHHHHHHHhcccEEehhhcccCcc------hhhh---------------cChHHHHHHHHHHHHcchHHhhhhhhh
Confidence 9999999999999999999999999863 2221 25899999999999999999999998
Q ss_pred -----ccccCCCCccHHHHHHHHhccCCCceEEecCCchhHHHHHHHhCCCcccc-cCCCCchhhhhhhCccCCCCccc
Q 026320 159 -----DVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLECLRGRNLGKSHRS 231 (240)
Q Consensus 159 -----gi~d~~g~~r~d~v~~i~~~~~~~~lifEAP~k~qQ~~~I~~fG~~VNLg-I~~~dVl~LE~LR~~~~G~~~~~ 231 (240)
|||++.|+||++.++.|++++|++|+|||||+|.||+|||++|||+|||+ |||+||++|||||+|+||.+..-
T Consensus 177 sg~~~Gi~~~~g~~r~~~~~~ii~~l~i~rviFEAp~k~qq~~fI~k~GpevNLanip~~eii~LEtLR~gLrgdT~gr 255 (258)
T COG1809 177 SGKEIGITDNEGEVREGELDSIIKGLGINRVIFEAPQKSQQVWFILKIGPEVNLANIPFEEIIALETLRRGLRGDTFGR 255 (258)
T ss_pred hccccCccccccchhhhHHHHHHhcCCchheeeecCCcchhhhHHHHhCCcCcccCCCHHHHHHHHHHHhhccccchhh
Confidence 89999999999999999999999999999999999999999999999999 99999999999999998865543
No 4
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=97.51 E-value=0.0017 Score=57.83 Aligned_cols=159 Identities=18% Similarity=0.256 Sum_probs=93.9
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCccccee-eeecCCCCCCC
Q 026320 41 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPKF-AVMFNKSDIPS 112 (240)
Q Consensus 41 tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~l~~~~r~~lI~~~~~~G~~v~~E~-g~k~~~~evg~ 112 (240)
+.+|+++.++ -.+++.++.++++||++||++-+. ..++.++..++-+.+++.|+++.+-. +...+. ..+
T Consensus 11 ~~~~~~~~~~-~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~-~~~- 87 (283)
T PRK13209 11 GIYEKALPAG-ECWLEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRF-PLG- 87 (283)
T ss_pred eeecccCCCC-CCHHHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeEEeccccccc-CCC-
Confidence 5789998765 479999999999999999998543 24477777788888889999875421 110000 011
Q ss_pred ccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCC--Ccc---HHH---HHHHHhccCCCce
Q 026320 113 DRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHAD--SLR---ADI---IAKVIGRLGLEKT 184 (240)
Q Consensus 113 ~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g--~~r---~d~---v~~i~~~~~~~~l 184 (240)
..|+. ......+.+.+.++..-+.|+.+|.+-+........ ... .+. +.++++..|+ +|
T Consensus 88 ~~~~~------------~r~~~~~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV-~i 154 (283)
T PRK13209 88 SEDDA------------VRAQALEIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASV-TL 154 (283)
T ss_pred CCCHH------------HHHHHHHHHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCC-EE
Confidence 00100 001123455566677778999999986542211111 100 122 2333344454 57
Q ss_pred EEec---C---CchhHHHHHHHhC-CCcccccCCCCch
Q 026320 185 MFEA---T---NPRTSEWFIRRYG-PKVNLFVDHSQVM 215 (240)
Q Consensus 185 ifEA---P---~k~qQ~~~I~~fG-~~VNLgI~~~dVl 215 (240)
.+|. + ...+-..+++..| |+|.+-.|+.++.
T Consensus 155 ~iE~~~~~~~~~~~~~~~ll~~v~~~~lgl~~D~~h~~ 192 (283)
T PRK13209 155 AFEIMDTPFMNSISKALGYAHYLNSPWFQLYPDIGNLS 192 (283)
T ss_pred EEeecCCcccCCHHHHHHHHHHhCCCccceEeccchHH
Confidence 7775 1 3334556788888 5666656766655
No 5
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=96.95 E-value=0.028 Score=49.74 Aligned_cols=159 Identities=15% Similarity=0.226 Sum_probs=89.9
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCcccceeeeecC-CCCCCC
Q 026320 41 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFN-KSDIPS 112 (240)
Q Consensus 41 tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~-~~evg~ 112 (240)
|.|+.++-++ -.+++.++.++++||+.||++-.. ...+.++..++-+.+++.|+++-+ +..-.. .-.++
T Consensus 6 g~~~~~~~~~-~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~-~~~~~~~~~~~~- 82 (284)
T PRK13210 6 GIYEKALPKH-LSWEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPS-MCLSGHRRFPFG- 82 (284)
T ss_pred chhhhhcCCC-CCHHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceE-EecccccCcCCC-
Confidence 3455555442 378999999999999999997322 244667778888899999998653 221000 00111
Q ss_pred ccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccc-cCCC-CccH------HHHHHHHhccCCCce
Q 026320 113 DRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVC-KHAD-SLRA------DIIAKVIGRLGLEKT 184 (240)
Q Consensus 113 ~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~-d~~g-~~r~------d~v~~i~~~~~~~~l 184 (240)
..|+. ......+.+.+.++..-+.||..|.+-+-..+ .... .... ..+.++++..|+ +|
T Consensus 83 ~~d~~------------~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~l 149 (284)
T PRK13210 83 SRDPA------------TRERALEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQV-ML 149 (284)
T ss_pred CCCHH------------HHHHHHHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCC-EE
Confidence 11110 01112445556666666889999998432211 1111 1112 122333444554 57
Q ss_pred EEec------CCchhHHHHHHHhC-CCcccccCCCCch
Q 026320 185 MFEA------TNPRTSEWFIRRYG-PKVNLFVDHSQVM 215 (240)
Q Consensus 185 ifEA------P~k~qQ~~~I~~fG-~~VNLgI~~~dVl 215 (240)
.+|. +...+-..+++..+ |+|.+..|+.++.
T Consensus 150 ~lE~~~~~~~~~~~~~~~l~~~v~~~~~~~~~D~~h~~ 187 (284)
T PRK13210 150 AVEIMDTPFMNSISKWKKWDKEIDSPWLTVYPDVGNLS 187 (284)
T ss_pred EEEecCccccCCHHHHHHHHHHcCCCceeEEecCChhh
Confidence 7776 34456778899988 4455446666543
No 6
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=96.94 E-value=0.0069 Score=56.64 Aligned_cols=124 Identities=16% Similarity=0.306 Sum_probs=90.6
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc-----
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE----- 77 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~----- 77 (240)
-|+.+-||+||..+.|++.+++-++.++++ +.++ .|+.+.-+|+.+ ++.++.+++.||+.|.|+--+.+
T Consensus 51 ~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~---~~~~--~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~ 125 (350)
T PRK08446 51 KIESVFIGGGTPSTVSAKFYEPIFEIISPY---LSKD--CEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLK 125 (350)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHh---cCCC--ceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 478899999999999999999999999988 2333 244444455443 78999999999999988766652
Q ss_pred -----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcE
Q 026320 78 -----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 152 (240)
Q Consensus 78 -----l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ 152 (240)
-+.++-.+.|+.+++.||..++ +-...+. |. +|.+.+.+.++..++.|+++
T Consensus 126 ~lgR~~~~~~~~~ai~~lr~~g~~~v~-iDli~Gl----------------Pg-------qt~~~~~~~l~~~~~l~~~~ 181 (350)
T PRK08446 126 FLGRIHSQKQIIKAIENAKKAGFENIS-IDLIYDT----------------PL-------DNKKLLKEELKLAKELPINH 181 (350)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCCEEE-EEeecCC----------------CC-------CCHHHHHHHHHHHHhcCCCE
Confidence 3456667889999999986321 1111111 11 25788899999999999998
Q ss_pred EEEe
Q 026320 153 IMID 156 (240)
Q Consensus 153 ViiE 156 (240)
|-+-
T Consensus 182 is~y 185 (350)
T PRK08446 182 LSAY 185 (350)
T ss_pred EEec
Confidence 8653
No 7
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=96.93 E-value=0.0053 Score=57.92 Aligned_cols=121 Identities=17% Similarity=0.373 Sum_probs=88.3
Q ss_pred CcccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc----
Q 026320 3 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE---- 77 (240)
Q Consensus 3 ~yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~---- 77 (240)
..|+-+-||+||..+.|.+.|++.++.++++.. .|+.+.-+|+.+ ++.++.+++.||+.|.|.--|.+
T Consensus 57 ~~i~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~-------~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L 129 (370)
T PRK06294 57 HFIDTVFFGGGTPSLVPPALIQDILKTLEAPHA-------TEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLL 129 (370)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHhCCC-------CeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHH
Confidence 357889999999999999999999999987621 133333456565 78999999999999988766552
Q ss_pred ------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCC
Q 026320 78 ------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 150 (240)
Q Consensus 78 ------l~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA 150 (240)
-+.++-.+.|+.+++.||. +.-. ...+. |. +|.+.+.+.++..++.+.
T Consensus 130 ~~l~R~~~~~~~~~ai~~~~~~g~~~v~~D--li~Gl----------------Pg-------qt~~~~~~~l~~~~~l~~ 184 (370)
T PRK06294 130 KLLGRTHSSSKAIDAVQECSEHGFSNLSID--LIYGL----------------PT-------QSLSDFIVDLHQAITLPI 184 (370)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCeEEEE--eecCC----------------CC-------CCHHHHHHHHHHHHccCC
Confidence 2445666788899999886 2222 22211 11 257899999999999999
Q ss_pred cEEEE
Q 026320 151 DMIMI 155 (240)
Q Consensus 151 ~~Vii 155 (240)
++|-+
T Consensus 185 ~~is~ 189 (370)
T PRK06294 185 THISL 189 (370)
T ss_pred CeEEE
Confidence 87754
No 8
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=96.93 E-value=0.0044 Score=54.40 Aligned_cols=128 Identities=20% Similarity=0.233 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHhCCceecCCcHHHHHHH--hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccc
Q 026320 21 PFIEEVVKRAHQHDVYVSTGDWAEHLIR--NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 98 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~v~~Gtl~E~a~~--qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~ 98 (240)
+.+.+-++.++++|+.+.... |.+.. .+++.+.++++.+.++|.+.|-+.|-+-.+.+++..++|+.+++.-=.
T Consensus 115 ~~~~~~i~~a~~~G~~v~~~~--~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~-- 190 (265)
T cd03174 115 ENAEEAIEAAKEAGLEVEGSL--EDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREALPD-- 190 (265)
T ss_pred HHHHHHHHHHHHCCCeEEEEE--EeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCC--
Confidence 368889999999999776531 12222 455689999999999999999999999999999999999999985211
Q ss_pred ceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCccHHHHHHHH
Q 026320 99 PKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVI 176 (240)
Q Consensus 99 ~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~v~~i~ 176 (240)
..++... . .|...-+..+...++|||++ |++- |+=+..||..++.+-..+
T Consensus 191 ~~~~~H~-H-------------------------n~~gla~an~laA~~aG~~~--id~s~~G~G~~~Gn~~~e~~~~~l 242 (265)
T cd03174 191 VPLGLHT-H-------------------------NTLGLAVANSLAALEAGADR--VDGSVNGLGERAGNAATEDLVAAL 242 (265)
T ss_pred CeEEEEe-C-------------------------CCCChHHHHHHHHHHcCCCE--EEeccccccccccCccHHHHHHHH
Confidence 2344422 1 12344477788889999977 4886 888999999999888777
Q ss_pred hccC
Q 026320 177 GRLG 180 (240)
Q Consensus 177 ~~~~ 180 (240)
+..+
T Consensus 243 ~~~~ 246 (265)
T cd03174 243 EGLG 246 (265)
T ss_pred HhcC
Confidence 7655
No 9
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=96.86 E-value=0.0079 Score=52.51 Aligned_cols=127 Identities=27% Similarity=0.285 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccce
Q 026320 21 PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPK 100 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E 100 (240)
+.+++-++.++++|..++.+. |.+-...++.+.++.+.+.++|.+.|-|.|-.-.+++++-.++|+.++++--. .+
T Consensus 108 ~~~~~~v~~ak~~g~~v~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~--~~ 183 (237)
T PF00682_consen 108 ERIEEAVKYAKELGYEVAFGC--EDASRTDPEELLELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALPD--IP 183 (237)
T ss_dssp HHHHHHHHHHHHTTSEEEEEE--TTTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTT--SE
T ss_pred HHHHHHHHHHHhcCCceEeCc--cccccccHHHHHHHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccC--Ce
Confidence 467888999999999887652 22223344578889999999999999999999999999999999999986332 34
Q ss_pred eeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCccHHHHHHHHhc
Q 026320 101 FAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGR 178 (240)
Q Consensus 101 ~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~v~~i~~~ 178 (240)
++... .. |...-+..+...++|||++| ++- |+=+..||...+.+-..+..
T Consensus 184 l~~H~-Hn-------------------------d~Gla~An~laA~~aGa~~i--d~t~~GlG~~~Gn~~le~lv~~L~~ 235 (237)
T PF00682_consen 184 LGFHA-HN-------------------------DLGLAVANALAALEAGADRI--DGTLGGLGERAGNAPLEELVAALER 235 (237)
T ss_dssp EEEEE-BB-------------------------TTS-HHHHHHHHHHTT-SEE--EEBGGGGSSTTSB-BHHHHHHHHHH
T ss_pred EEEEe-cC-------------------------CccchhHHHHHHHHcCCCEE--EccCccCCCCCCCccHHHHHHHHhh
Confidence 55533 11 22334677888899999994 665 88899999998887766654
Q ss_pred c
Q 026320 179 L 179 (240)
Q Consensus 179 ~ 179 (240)
.
T Consensus 236 ~ 236 (237)
T PF00682_consen 236 M 236 (237)
T ss_dssp T
T ss_pred c
Confidence 4
No 10
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=96.83 E-value=0.018 Score=54.15 Aligned_cols=143 Identities=16% Similarity=0.147 Sum_probs=106.0
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHH
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETL 83 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r 83 (240)
-+|.+.++.. ....+.+++-++.+|++|..++.. ++.+....++.+.++.+.+.++|.+.|-|.|-.-.+.+++-
T Consensus 101 gvd~iri~~~---~~e~~~~~~~i~~ak~~G~~v~~~--l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v 175 (337)
T PRK08195 101 GVRVVRVATH---CTEADVSEQHIGLARELGMDTVGF--LMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDV 175 (337)
T ss_pred CCCEEEEEEe---cchHHHHHHHHHHHHHCCCeEEEE--EEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHH
Confidence 4677777653 444568999999999999877653 22333445557788888889999999999999999999999
Q ss_pred HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccc
Q 026320 84 LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVC 161 (240)
Q Consensus 84 ~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~ 161 (240)
.++++.++++ +.....+|.... .|...-+-.....++|||+ +|++. |+=
T Consensus 176 ~~~v~~l~~~-l~~~i~ig~H~H--------------------------nnlGla~ANslaAi~aGa~--~iD~Sl~GlG 226 (337)
T PRK08195 176 RDRVRALRAA-LKPDTQVGFHGH--------------------------NNLGLGVANSLAAVEAGAT--RIDGSLAGLG 226 (337)
T ss_pred HHHHHHHHHh-cCCCCeEEEEeC--------------------------CCcchHHHHHHHHHHhCCC--EEEecChhhc
Confidence 9999999874 212233454321 1234457777888999999 57885 888
Q ss_pred cCCCCccHHHHHHHHhccC
Q 026320 162 KHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 162 d~~g~~r~d~v~~i~~~~~ 180 (240)
...||..++.+-..+++.|
T Consensus 227 ~~aGN~~tE~lv~~L~~~g 245 (337)
T PRK08195 227 AGAGNTPLEVLVAVLDRMG 245 (337)
T ss_pred ccccCccHHHHHHHHHhcC
Confidence 8999999998777776655
No 11
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=96.80 E-value=0.034 Score=49.57 Aligned_cols=156 Identities=17% Similarity=0.265 Sum_probs=90.7
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCcccceeeeecC-CCCCCCcc
Q 026320 43 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFN-KSDIPSDR 114 (240)
Q Consensus 43 ~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~-~~evg~~~ 114 (240)
|+.++.++ -.+.+-++.++++||++||++-+. .+++.+++..+-+.+++.|+++.+ +..-.. ....+ ..
T Consensus 8 ~~~~~~~~-~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~-~~~~~~~~~~l~-~~ 84 (279)
T TIGR00542 8 YEKALPKG-ECWLERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPS-MCLSAHRRFPLG-SK 84 (279)
T ss_pred ehhhCCCC-CCHHHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCcee-eecCCCccCcCC-Cc
Confidence 34455532 368888999999999999997443 355788888899999999998753 221000 00011 11
Q ss_pred ccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccc-cCC-CCccHH------HHHHHHhccCCCceEE
Q 026320 115 DRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVC-KHA-DSLRAD------IIAKVIGRLGLEKTMF 186 (240)
Q Consensus 115 d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~-d~~-g~~r~d------~v~~i~~~~~~~~lif 186 (240)
|+. ......+.+-+.++..-+.||..|.+-+.... ... ...... .+.++++..|+ +|.+
T Consensus 85 ~~~------------~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv-~l~l 151 (279)
T TIGR00542 85 DKA------------VRQQGLEIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQV-TLAV 151 (279)
T ss_pred CHH------------HHHHHHHHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCC-EEEE
Confidence 110 01122455666777777899999998765432 111 111111 22334445555 5788
Q ss_pred ec---C---CchhHHHHHHHhC-CCcccccCCCCc
Q 026320 187 EA---T---NPRTSEWFIRRYG-PKVNLFVDHSQV 214 (240)
Q Consensus 187 EA---P---~k~qQ~~~I~~fG-~~VNLgI~~~dV 214 (240)
|. | ...+-..+++..| |+|.+..|+.++
T Consensus 152 E~~~~~~~~t~~~~~~li~~v~~~~v~~~~D~~h~ 186 (279)
T TIGR00542 152 EIMDTPFMSSISKWLKWDHYLNSPWFTLYPDIGNL 186 (279)
T ss_pred eeCCCchhcCHHHHHHHHHHcCCCceEEEeCcChh
Confidence 85 2 3345567888888 555554666554
No 12
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=96.79 E-value=0.017 Score=51.73 Aligned_cols=143 Identities=17% Similarity=0.224 Sum_probs=104.5
Q ss_pred cccEEEecCccccccCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 026320 4 FVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 72 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~-----------~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 72 (240)
.+|.+.+...+|-.+.+ +.+++-++.++++|..++.+- |.+-...++.+.++.+.+.+.|.+.|-+.
T Consensus 82 g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~--~~~~~~~~~~~~~~~~~~~~~G~~~i~l~ 159 (259)
T cd07939 82 GVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA--EDASRADPDFLIEFAEVAQEAGADRLRFA 159 (259)
T ss_pred CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee--ccCCCCCHHHHHHHHHHHHHCCCCEEEeC
Confidence 46777777666655432 356788999999999887543 22323445578888888899999999999
Q ss_pred CCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcE
Q 026320 73 VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 152 (240)
Q Consensus 73 dGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ 152 (240)
|-+-.+.+++-.++++.+++. +. ..++..+ .. |...-.-.+-..+++||++
T Consensus 160 DT~G~~~P~~v~~lv~~l~~~-~~--~~l~~H~-Hn-------------------------~~Gla~An~laAi~aG~~~ 210 (259)
T cd07939 160 DTVGILDPFTTYELIRRLRAA-TD--LPLEFHA-HN-------------------------DLGLATANTLAAVRAGATH 210 (259)
T ss_pred CCCCCCCHHHHHHHHHHHHHh-cC--CeEEEEe-cC-------------------------CCChHHHHHHHHHHhCCCE
Confidence 999999999999999999874 22 2355533 11 2233466777789999986
Q ss_pred EEEecc--ccccCCCCccHHHHHHHHhcc
Q 026320 153 IMIDSD--DVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 153 ViiEar--gi~d~~g~~r~d~v~~i~~~~ 179 (240)
|++. |+=+..||.-++.+-..+...
T Consensus 211 --vd~s~~G~G~~aGN~~tE~lv~~l~~~ 237 (259)
T cd07939 211 --VSVTVNGLGERAGNAALEEVVMALKHL 237 (259)
T ss_pred --EEEecccccccccCcCHHHHHHHHHHh
Confidence 5886 777899999988877666544
No 13
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=96.70 E-value=0.012 Score=55.17 Aligned_cols=124 Identities=20% Similarity=0.270 Sum_probs=89.3
Q ss_pred CcccEEEecCccccccChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc----
Q 026320 3 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL---- 76 (240)
Q Consensus 3 ~yID~lKfg~GTs~l~p~~~l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti---- 76 (240)
..|+-+-||+||..++|.+.|++-++.++++ ++.. . .|+.+.-+|+.+ ++.++.++++||+.|.+.--+.
T Consensus 58 ~~i~~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~--~--~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~ 133 (375)
T PRK05628 58 PPVSTVFVGGGTPSLLGAEGLARVLDAVRDTFGLAP--G--AEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHV 133 (375)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCC--C--CEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHH
Confidence 3488999999999999999999999999874 4422 1 133332334443 5799999999999999876665
Q ss_pred ------cCChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcC
Q 026320 77 ------EIPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 149 (240)
Q Consensus 77 ------~l~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAG 149 (240)
..+.++-.+.++.+++.|+. +...+=. +. |. +|.+++.+.++..++.|
T Consensus 134 L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~--Gl----------------Pg-------qt~~~~~~tl~~~~~l~ 188 (375)
T PRK05628 134 LAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIY--GT----------------PG-------ESDDDWRASLDAALEAG 188 (375)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEec--cC----------------CC-------CCHHHHHHHHHHHHhcC
Confidence 24566677889999999987 4333222 11 11 25788999999999999
Q ss_pred CcEEEE
Q 026320 150 ADMIMI 155 (240)
Q Consensus 150 A~~Vii 155 (240)
.+.|-+
T Consensus 189 ~~~i~~ 194 (375)
T PRK05628 189 VDHVSA 194 (375)
T ss_pred CCEEEe
Confidence 998843
No 14
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=96.57 E-value=0.037 Score=52.02 Aligned_cols=143 Identities=16% Similarity=0.170 Sum_probs=104.8
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHH
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETL 83 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r 83 (240)
-||.+-++.. ....+.+++-++.+|+.|..++.. ++.+....|+.+-++.+.+.+.|.++|-|.|-.-.+.+++-
T Consensus 100 gvd~iri~~~---~~e~d~~~~~i~~ak~~G~~v~~~--l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v 174 (333)
T TIGR03217 100 GARTVRVATH---CTEADVSEQHIGMARELGMDTVGF--LMMSHMTPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDV 174 (333)
T ss_pred CCCEEEEEec---cchHHHHHHHHHHHHHcCCeEEEE--EEcccCCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHH
Confidence 3677776653 344567899999999999876642 22333455567888888899999999999999999999999
Q ss_pred HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccc
Q 026320 84 LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVC 161 (240)
Q Consensus 84 ~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~ 161 (240)
.++++.++++ +.+-.++|.... .|...-+-.....++|||++ |++. |+=
T Consensus 175 ~~~v~~l~~~-l~~~i~ig~H~H--------------------------nnlGla~ANslaAi~aGa~~--iD~Sl~G~G 225 (333)
T TIGR03217 175 RDRVRALKAV-LKPETQVGFHAH--------------------------HNLSLAVANSIAAIEAGATR--IDASLRGLG 225 (333)
T ss_pred HHHHHHHHHh-CCCCceEEEEeC--------------------------CCCchHHHHHHHHHHhCCCE--EEeeccccc
Confidence 9999999873 221123555321 12344467777889999998 6775 888
Q ss_pred cCCCCccHHHHHHHHhccC
Q 026320 162 KHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 162 d~~g~~r~d~v~~i~~~~~ 180 (240)
...||..++.+-..++..|
T Consensus 226 ~~aGN~~~E~lv~~l~~~g 244 (333)
T TIGR03217 226 AGAGNAPLEVFVAVLDRLG 244 (333)
T ss_pred ccccCccHHHHHHHHHhcC
Confidence 8999999998877776655
No 15
>PRK05660 HemN family oxidoreductase; Provisional
Probab=96.52 E-value=0.021 Score=54.03 Aligned_cols=124 Identities=15% Similarity=0.235 Sum_probs=89.2
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc-----
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE----- 77 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~----- 77 (240)
-|+-+=||+||..+.+++.|.+-++.++++= .+.++ .|+.+.-+|+. -++.++.++++||+.|.|+--+.+
T Consensus 58 ~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~-~~~~~--~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~ 134 (378)
T PRK05660 58 EVHSIFIGGGTPSLFSAEAIQRLLDGVRARL-PFAPD--AEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLK 134 (378)
T ss_pred ceeEEEeCCCccccCCHHHHHHHHHHHHHhC-CCCCC--cEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHH
Confidence 3678889999999999999999999998751 11112 24444334333 347889999999999998866653
Q ss_pred -----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcE
Q 026320 78 -----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 152 (240)
Q Consensus 78 -----l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ 152 (240)
-+.++-.+.|+.+++.||..++ +....+. |. ++.+.+.+.++..++.|.++
T Consensus 135 ~l~r~~~~~~~~~ai~~~~~~G~~~v~-~dli~Gl----------------pg-------qt~~~~~~~l~~~~~l~p~~ 190 (378)
T PRK05660 135 RLGRIHGPDEAKRAAKLAQGLGLRSFN-LDLMHGL----------------PD-------QSLEEALDDLRQAIALNPPH 190 (378)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCCeEE-EEeecCC----------------CC-------CCHHHHHHHHHHHHhcCCCe
Confidence 3566777889999999997432 2332221 11 25789999999999999998
Q ss_pred EE
Q 026320 153 IM 154 (240)
Q Consensus 153 Vi 154 (240)
|-
T Consensus 191 is 192 (378)
T PRK05660 191 LS 192 (378)
T ss_pred EE
Confidence 84
No 16
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=96.42 E-value=0.084 Score=46.28 Aligned_cols=132 Identities=19% Similarity=0.203 Sum_probs=87.5
Q ss_pred ccEEEecCcccc----ccChhHHHHHHHHHHhCC--ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC
Q 026320 5 VDGLKFSGGSHS----LMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI 78 (240)
Q Consensus 5 ID~lKfg~GTs~----l~p~~~l~eKi~l~~~~g--V~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l 78 (240)
||.+=+|+|.+. +++ ...+.++.+++.+ +.+. ++..+ . .+.++.+++.|++.|-|+...-+.
T Consensus 33 V~~IEvg~~~~~~~~p~~~--~~~~~i~~l~~~~~~~~~~-------~l~~~--~-~~~i~~a~~~g~~~i~i~~~~s~~ 100 (265)
T cd03174 33 VDSIEVGSGASPKAVPQME--DDWEVLRAIRKLVPNVKLQ-------ALVRN--R-EKGIERALEAGVDEVRIFDSASET 100 (265)
T ss_pred CCEEEeccCcCccccccCC--CHHHHHHHHHhccCCcEEE-------EEccC--c-hhhHHHHHhCCcCEEEEEEecCHH
Confidence 566667776665 333 2344444454444 3332 11111 1 678899999999999999876631
Q ss_pred ------------ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHH
Q 026320 79 ------------PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCL 146 (240)
Q Consensus 79 ------------~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dL 146 (240)
..+.-.+.|+.+++.|+.+.. ...... . |..+++++.+.++...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~--~~~~~~-----~-----------------~~~~~~~l~~~~~~~~ 156 (265)
T cd03174 101 HSRKNLNKSREEDLENAEEAIEAAKEAGLEVEG--SLEDAF-----G-----------------CKTDPEYVLEVAKALE 156 (265)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE--EEEeec-----C-----------------CCCCHHHHHHHHHHHH
Confidence 345566889999999986433 331100 0 0125889999999999
Q ss_pred HcCCcEEEEeccccccCCCCccHHHHHHHHh
Q 026320 147 EAGADMIMIDSDDVCKHADSLRADIIAKVIG 177 (240)
Q Consensus 147 eAGA~~ViiEargi~d~~g~~r~d~v~~i~~ 177 (240)
++||+.|. ++|..|...++.+.++++
T Consensus 157 ~~g~~~i~-----l~Dt~G~~~P~~v~~li~ 182 (265)
T cd03174 157 EAGADEIS-----LKDTVGLATPEEVAELVK 182 (265)
T ss_pred HcCCCEEE-----echhcCCcCHHHHHHHHH
Confidence 99999887 678888888888888875
No 17
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=96.39 E-value=0.027 Score=54.49 Aligned_cols=127 Identities=17% Similarity=0.354 Sum_probs=89.0
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc-----
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE----- 77 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~----- 77 (240)
-|+-+-||+||..+++++.+.+-++.++++ .....+ .|+.+.-+|.. -++.++.+++.||+.|.|+--+.+
T Consensus 102 ~v~~I~fgGGtP~~l~~~~l~~ll~~i~~~-~~~~~~--~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~ 178 (455)
T TIGR00538 102 HVSQLHWGGGTPTYLSPEQISRLMKLIREN-FPFNAD--AEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQ 178 (455)
T ss_pred ceEEEEECCCCcCCCCHHHHHHHHHHHHHh-CCCCCC--CeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHH
Confidence 366788999999999999999999999986 111111 22222223323 368999999999999999855553
Q ss_pred -----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcE
Q 026320 78 -----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 152 (240)
Q Consensus 78 -----l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ 152 (240)
-+.++-.+.++.+++.|++.. -+....+. |. ++.+.+.+.++..++.|++.
T Consensus 179 ~l~r~~~~~~~~~ai~~l~~~G~~~v-~~dli~Gl----------------Pg-------qt~e~~~~tl~~~~~l~~~~ 234 (455)
T TIGR00538 179 AVNRIQPEEMIFELMNHAREAGFTSI-NIDLIYGL----------------PK-------QTKESFAKTLEKVAELNPDR 234 (455)
T ss_pred HhCCCCCHHHHHHHHHHHHhcCCCcE-EEeEEeeC----------------CC-------CCHHHHHHHHHHHHhcCCCE
Confidence 355666789999999998621 12222221 11 25788899999999999999
Q ss_pred EEEec
Q 026320 153 IMIDS 157 (240)
Q Consensus 153 ViiEa 157 (240)
|-+-.
T Consensus 235 is~y~ 239 (455)
T TIGR00538 235 LAVFN 239 (455)
T ss_pred EEEec
Confidence 86653
No 18
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=96.37 E-value=0.069 Score=47.94 Aligned_cols=142 Identities=16% Similarity=0.158 Sum_probs=102.5
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHH
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETL 83 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r 83 (240)
-+|.+-+..-.+ +.+.+++-++.+|++|..+...- +.+....++.+.++.+.+.+.|.+.|-+.|-+-.+.+++-
T Consensus 98 g~~~iri~~~~s---~~~~~~~~i~~ak~~G~~v~~~~--~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v 172 (263)
T cd07943 98 GVDVVRVATHCT---EADVSEQHIGAARKLGMDVVGFL--MMSHMASPEELAEQAKLMESYGADCVYVTDSAGAMLPDDV 172 (263)
T ss_pred CCCEEEEEechh---hHHHHHHHHHHHHHCCCeEEEEE--EeccCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHH
Confidence 356666654443 23478999999999998776421 2223344557888889999999999999999999999999
Q ss_pred HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccc
Q 026320 84 LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVC 161 (240)
Q Consensus 84 ~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~ 161 (240)
.++++.++++= .+ ..++..+ . .|...-+-.+...++|||++ |++. |+=
T Consensus 173 ~~lv~~l~~~~-~~-~~l~~H~-H-------------------------n~~GlA~AN~laAi~aGa~~--vd~s~~GlG 222 (263)
T cd07943 173 RERVRALREAL-DP-TPVGFHG-H-------------------------NNLGLAVANSLAAVEAGATR--IDGSLAGLG 222 (263)
T ss_pred HHHHHHHHHhC-CC-ceEEEEe-c-------------------------CCcchHHHHHHHHHHhCCCE--EEeeccccc
Confidence 99999998841 11 1344432 1 13345577778889999996 6775 888
Q ss_pred cCCCCccHHHHHHHHhccC
Q 026320 162 KHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 162 d~~g~~r~d~v~~i~~~~~ 180 (240)
+..||..++.+-..++..|
T Consensus 223 ~~aGN~~~E~lv~~L~~~g 241 (263)
T cd07943 223 AGAGNTPLEVLVAVLERMG 241 (263)
T ss_pred CCcCCccHHHHHHHHHhcC
Confidence 8899999988776666544
No 19
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=96.33 E-value=0.055 Score=49.19 Aligned_cols=141 Identities=11% Similarity=0.099 Sum_probs=100.5
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCCceecC--C-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChh
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEE 81 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~--G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~ 81 (240)
+|.+-+...++- -+.+++-++.++++|..+.. . ++. -...++.+.++.+.+.+.|.+.|-+.|-.-.+.++
T Consensus 105 ~~~iri~~~~~~---~~~~~~~i~~ak~~G~~v~~~i~~~~~---~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~ 178 (275)
T cd07937 105 IDIFRIFDALND---VRNLEVAIKAVKKAGKHVEGAICYTGS---PVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPY 178 (275)
T ss_pred CCEEEEeecCCh---HHHHHHHHHHHHHCCCeEEEEEEecCC---CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHH
Confidence 566666555544 35789999999999986653 1 111 12234577888889999999999999999999999
Q ss_pred HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccc
Q 026320 82 TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVC 161 (240)
Q Consensus 82 ~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~ 161 (240)
+-.++|+.++++ +. ..+++.+ .. |...-.......++|||++|=.=--|+=
T Consensus 179 ~v~~lv~~l~~~-~~--~~l~~H~-Hn-------------------------d~GlA~aN~laA~~aGa~~vd~sv~GlG 229 (275)
T cd07937 179 AAYELVKALKKE-VG--LPIHLHT-HD-------------------------TSGLAVATYLAAAEAGVDIVDTAISPLS 229 (275)
T ss_pred HHHHHHHHHHHh-CC--CeEEEEe-cC-------------------------CCChHHHHHHHHHHhCCCEEEEeccccc
Confidence 999999999884 11 2344432 11 2234467777789999997544445888
Q ss_pred cCCCCccHHHHHHHHhccC
Q 026320 162 KHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 162 d~~g~~r~d~v~~i~~~~~ 180 (240)
+..||...+.+-..+...|
T Consensus 230 ~~aGN~~~E~l~~~L~~~g 248 (275)
T cd07937 230 GGTSQPSTESMVAALRGTG 248 (275)
T ss_pred CCcCChhHHHHHHHHHccC
Confidence 8899999888877776554
No 20
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=96.25 E-value=0.028 Score=53.60 Aligned_cols=124 Identities=16% Similarity=0.287 Sum_probs=88.9
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc------
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL------ 76 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti------ 76 (240)
-|+-+=||+||..++|++.|++-++.++++ ..+.+. .|+.+.-+|+.+ ++.++.+++.|++.|.|.--|.
T Consensus 66 ~i~~iy~GGGTps~l~~~~l~~ll~~i~~~-~~~~~~--~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~ 142 (400)
T PRK07379 66 PLQTVFFGGGTPSLLSVEQLERILTTLDQR-FGIAPD--AEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLA 142 (400)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHh-CCCCCC--CEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHH
Confidence 477889999999999999999999999876 222222 233333344443 5889999999999998865554
Q ss_pred ----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcE
Q 026320 77 ----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 152 (240)
Q Consensus 77 ----~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ 152 (240)
..+.++-.+.++.+++.||.... +....+. |. +|.+.+.+.++..++.+.+.
T Consensus 143 ~l~R~~~~~~~~~ai~~l~~~G~~~v~-~dlI~Gl----------------Pg-------qt~e~~~~tl~~~~~l~p~~ 198 (400)
T PRK07379 143 LCGRSHRVKDIFAAVDLIHQAGIENFS-LDLISGL----------------PH-------QTLEDWQASLEAAIALNPTH 198 (400)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCCeEE-EEeecCC----------------CC-------CCHHHHHHHHHHHHcCCCCE
Confidence 45667778899999999987321 2222221 11 25788899999999999998
Q ss_pred EE
Q 026320 153 IM 154 (240)
Q Consensus 153 Vi 154 (240)
|-
T Consensus 199 is 200 (400)
T PRK07379 199 LS 200 (400)
T ss_pred EE
Confidence 83
No 21
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=96.20 E-value=0.06 Score=51.18 Aligned_cols=140 Identities=19% Similarity=0.225 Sum_probs=103.4
Q ss_pred ccEEEecCccccccCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 026320 5 VDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 73 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~-----------~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd 73 (240)
+|.+-+...+|-++-+ +.+++-++.++++|..++.+ +|.+-..+++.+.++++.+.+.|.+.|-+.|
T Consensus 89 ~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~--~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~D 166 (378)
T PRK11858 89 VDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFS--AEDASRTDLDFLIEFAKAAEEAGADRVRFCD 166 (378)
T ss_pred cCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE--eccCCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 4556666666555322 45678889999999988765 4555555667889999999999999999999
Q ss_pred CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEE
Q 026320 74 GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 153 (240)
Q Consensus 74 Gti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~V 153 (240)
-.-.+.+.+-.++|+.+++.= .+ .+++.+ .. |...-.-.....++|||++|
T Consensus 167 T~G~~~P~~v~~lv~~l~~~~-~~--~l~~H~-Hn-------------------------d~GlA~AN~laAv~aGa~~v 217 (378)
T PRK11858 167 TVGILDPFTMYELVKELVEAV-DI--PIEVHC-HN-------------------------DFGMATANALAGIEAGAKQV 217 (378)
T ss_pred cCCCCCHHHHHHHHHHHHHhc-CC--eEEEEe-cC-------------------------CcCHHHHHHHHHHHcCCCEE
Confidence 999999999999999998752 22 344433 11 23344667777899999975
Q ss_pred EEecc--ccccCCCCccHHHHHHHHh
Q 026320 154 MIDSD--DVCKHADSLRADIIAKVIG 177 (240)
Q Consensus 154 iiEar--gi~d~~g~~r~d~v~~i~~ 177 (240)
++- |+=+..||...+.+-..+.
T Consensus 218 --d~tv~GlGeraGNa~lE~vv~~L~ 241 (378)
T PRK11858 218 --HTTVNGLGERAGNAALEEVVMALK 241 (378)
T ss_pred --EEeeccccccccCccHHHHHHHHH
Confidence 664 8888999998887665554
No 22
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=96.17 E-value=0.043 Score=53.10 Aligned_cols=126 Identities=18% Similarity=0.334 Sum_probs=89.1
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc------
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE------ 77 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~------ 77 (240)
|+.+=||+||..++|.+.|.+-++.++++- .+.++ .|+.+.-+|+. -++.++.+++.||+.|.|+--+.+
T Consensus 103 v~~i~~gGGtPs~l~~~~l~~ll~~l~~~~-~~~~~--~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~ 179 (453)
T PRK09249 103 VSQLHWGGGTPTFLSPEQLRRLMALLREHF-NFAPD--AEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKA 179 (453)
T ss_pred eEEEEECCcccccCCHHHHHHHHHHHHHhC-CCCCC--CEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHH
Confidence 678889999999999999999999998861 11122 12222223333 368999999999999999866653
Q ss_pred ----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEE
Q 026320 78 ----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 153 (240)
Q Consensus 78 ----l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~V 153 (240)
-+.++-.+.|+.+++.||+.. -+....+. | -++.+++.+.++..++.|++.|
T Consensus 180 l~r~~~~~~~~~ai~~l~~~G~~~v-~~dli~Gl----------------P-------gqt~e~~~~~l~~~~~l~~~~i 235 (453)
T PRK09249 180 VNRIQPFEFTFALVEAARELGFTSI-NIDLIYGL----------------P-------KQTPESFARTLEKVLELRPDRL 235 (453)
T ss_pred hCCCCCHHHHHHHHHHHHHcCCCcE-EEEEEccC----------------C-------CCCHHHHHHHHHHHHhcCCCEE
Confidence 566777889999999998421 12222221 1 0257888899999999999988
Q ss_pred EEec
Q 026320 154 MIDS 157 (240)
Q Consensus 154 iiEa 157 (240)
-+=.
T Consensus 236 ~~y~ 239 (453)
T PRK09249 236 AVFN 239 (453)
T ss_pred EEcc
Confidence 7654
No 23
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=96.15 E-value=0.047 Score=51.47 Aligned_cols=124 Identities=15% Similarity=0.179 Sum_probs=90.3
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc------
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL------ 76 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti------ 76 (240)
.++-+=||+||..+.|.+.|++-++.++++ + .++ .|+.+.-+|+.+ ++.++.+++.|++.|.|.--+.
T Consensus 56 ~~~tiy~GGGTPs~L~~~~l~~ll~~i~~~-~--~~~--~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~ 130 (353)
T PRK05904 56 QFKTIYLGGGTPNCLNDQLLDILLSTIKPY-V--DNN--CEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILK 130 (353)
T ss_pred CeEEEEECCCccccCCHHHHHHHHHHHHHh-c--CCC--CeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 356677999999999999999999999997 2 223 244554556553 7899999999999998875555
Q ss_pred ----cCChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCc
Q 026320 77 ----EIPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 151 (240)
Q Consensus 77 ----~l~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~ 151 (240)
.-+.++-.+.|+.++++||. +-..+ ..+. |. ++.+++.+.++...+.+.+
T Consensus 131 ~l~R~~~~~~~~~ai~~lr~~G~~~v~~dl--I~Gl----------------Pg-------qt~e~~~~tl~~~~~l~p~ 185 (353)
T PRK05904 131 QLNRTHTIQDSKEAINLLHKNGIYNISCDF--LYCL----------------PI-------LKLKDLDEVFNFILKHKIN 185 (353)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCCcEEEEE--eecC----------------CC-------CCHHHHHHHHHHHHhcCCC
Confidence 34556777899999999986 22222 2211 11 2468888888888999999
Q ss_pred EEEEec
Q 026320 152 MIMIDS 157 (240)
Q Consensus 152 ~ViiEa 157 (240)
+|-+=.
T Consensus 186 ~is~y~ 191 (353)
T PRK05904 186 HISFYS 191 (353)
T ss_pred EEEEEe
Confidence 886654
No 24
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=96.10 E-value=0.049 Score=52.74 Aligned_cols=125 Identities=20% Similarity=0.398 Sum_probs=89.6
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc-----
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE----- 77 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~----- 77 (240)
|+-+=||+||..++|++.|++.++.++++ ++ .++ .|+.+.-+|.. -++.++.++++||+.|.|+--+.+
T Consensus 104 v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~--~~~--~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~ 179 (453)
T PRK13347 104 VSQLHWGGGTPTILNPDQFERLMAALRDAFDF--APE--AEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQK 179 (453)
T ss_pred EEEEEEcCcccccCCHHHHHHHHHHHHHhCCC--CCC--ceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHH
Confidence 55677999999999999999999999885 22 111 13322223333 378999999999999999866653
Q ss_pred -----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcE
Q 026320 78 -----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 152 (240)
Q Consensus 78 -----l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ 152 (240)
-+.++-.+.|+.+++.||..+. +....+. |. ++.+.+.+.++..++.|.+.
T Consensus 180 ~l~R~~~~~~~~~ai~~lr~~G~~~v~-~dli~Gl----------------Pg-------qt~e~~~~tl~~~~~l~p~~ 235 (453)
T PRK13347 180 AINRIQPEEMVARAVELLRAAGFESIN-FDLIYGL----------------PH-------QTVESFRETLDKVIALSPDR 235 (453)
T ss_pred HhCCCCCHHHHHHHHHHHHhcCCCcEE-EeEEEeC----------------CC-------CCHHHHHHHHHHHHhcCCCE
Confidence 5667778899999999986211 1122211 11 25788999999999999999
Q ss_pred EEEec
Q 026320 153 IMIDS 157 (240)
Q Consensus 153 ViiEa 157 (240)
|-+-+
T Consensus 236 i~~y~ 240 (453)
T PRK13347 236 IAVFG 240 (453)
T ss_pred EEEec
Confidence 97754
No 25
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=96.09 E-value=0.21 Score=44.73 Aligned_cols=147 Identities=17% Similarity=0.154 Sum_probs=97.6
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 128 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 128 (240)
+.+.++++++.+.|.+.|=+.-.| ..|+.++|.++++.+.+.- ...+.+-.+ ++
T Consensus 18 ~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~---~~~~~vi~g---v~----------------- 74 (281)
T cd00408 18 DALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAV---AGRVPVIAG---VG----------------- 74 (281)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHh---CCCCeEEEe---cC-----------------
Confidence 378899999999999999665433 4899999999999998841 111111110 10
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccCC----CCccHHHHHHHHhcc
Q 026320 129 TEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHA----DSLRADIIAKVIGRL 179 (240)
Q Consensus 129 ~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~~----g~~r~d~v~~i~~~~ 179 (240)
..+..+.+++++..-++||+.|++=.- -+|+.- -.+..+++.++.+ .
T Consensus 75 ---~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~-~ 150 (281)
T cd00408 75 ---ANSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAE-H 150 (281)
T ss_pred ---CccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhc-C
Confidence 114678899999999999999999763 135443 2456777777764 3
Q ss_pred C-CCceEEecCCchhHHHHHHHhCCCcccccCCCCchhhhhhhCccCC
Q 026320 180 G-LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 180 ~-~~~lifEAP~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G 226 (240)
+ +-=+=...++..+...+++..++++.++... |-.-++.|..|--|
T Consensus 151 ~~v~giK~s~~d~~~~~~~~~~~~~~~~v~~G~-d~~~~~~l~~G~~G 197 (281)
T cd00408 151 PNIVGIKDSSGDLDRLTRLIALLGPDFAVLSGD-DDLLLPALALGADG 197 (281)
T ss_pred CCEEEEEeCCCCHHHHHHHHHhcCCCeEEEEcc-hHHHHHHHHcCCCE
Confidence 3 2222244567777777888887777776444 55666777766434
No 26
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=96.01 E-value=0.15 Score=45.93 Aligned_cols=145 Identities=14% Similarity=0.175 Sum_probs=92.8
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcc----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCC
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGSL----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 127 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGti----~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 127 (240)
+.+.++++++.+.|.+.|=+. ||. .|+.++|.++++.+.+. +...+-+-.+ + .
T Consensus 21 ~~~~~~i~~l~~~Gv~gl~v~-GstGE~~~lt~~Er~~l~~~~~~~---~~~~~~vi~g---v--~-------------- 77 (284)
T cd00950 21 DALERLIEFQIENGTDGLVVC-GTTGESPTLSDEEHEAVIEAVVEA---VNGRVPVIAG---T--G-------------- 77 (284)
T ss_pred HHHHHHHHHHHHcCCCEEEEC-CCCcchhhCCHHHHHHHHHHHHHH---hCCCCcEEec---c--C--------------
Confidence 368899999999999999887 776 99999999999999884 1111111110 1 0
Q ss_pred CcccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccCC---C-CccHHHHHHHHhc
Q 026320 128 STEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHA---D-SLRADIIAKVIGR 178 (240)
Q Consensus 128 ~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~~---g-~~r~d~v~~i~~~ 178 (240)
..+..+.+++++..-++||+.|++=.- -+|+.- | .+..+++.++++
T Consensus 78 ----~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~- 152 (284)
T cd00950 78 ----SNNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLAE- 152 (284)
T ss_pred ----CccHHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhc-
Confidence 114688899999999999999999763 135432 2 455667777764
Q ss_pred cCCCceEE-ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhCccCC
Q 026320 179 LGLEKTMF-EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 179 ~~~~~lif-EA-P~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G 226 (240)
.| .-+-+ ++ ++...-..+++++++++.++...++ .-+..++.|--|
T Consensus 153 ~p-~v~giK~s~~~~~~~~~~~~~~~~~~~v~~G~d~-~~~~~~~~G~~G 200 (284)
T cd00950 153 HP-NIVGIKEATGDLDRVSELIALCPDDFAVLSGDDA-LTLPFLALGGVG 200 (284)
T ss_pred CC-CEEEEEECCCCHHHHHHHHHhCCCCeEEEeCChH-hHHHHHHCCCCE
Confidence 32 11111 22 3444445566777777766544443 345666655433
No 27
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=96.00 E-value=0.11 Score=49.50 Aligned_cols=128 Identities=17% Similarity=0.157 Sum_probs=91.9
Q ss_pred HHHHHHHHHhCCceec------CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCc
Q 026320 23 IEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 96 (240)
Q Consensus 23 l~eKi~l~~~~gV~v~------~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~ 96 (240)
+++-+++++++|..+. .|..++. .-+++.+.++.+.+.+.|.+.|-|.|-+--+.+.+-.++++.+++. +.
T Consensus 164 ~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~--r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~-~~ 240 (347)
T PLN02746 164 YREVALAAKKHSIPVRGYVSCVVGCPIEG--PVPPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAV-VP 240 (347)
T ss_pred HHHHHHHHHHcCCeEEEEEEeeecCCccC--CCCHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHh-CC
Confidence 4489999999999773 2333332 2345688899999999999999999999999999999999999874 22
Q ss_pred ccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecccccc------CCCCccHH
Q 026320 97 AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK------HADSLRAD 170 (240)
Q Consensus 97 v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d------~~g~~r~d 170 (240)
..+++..+. . |....+-.+-..++|||++|=.=--|+=. ..||.-++
T Consensus 241 -~~~i~~H~H-n-------------------------d~GlA~AN~lAA~~aGa~~vd~sv~GlGecPfa~graGN~atE 293 (347)
T PLN02746 241 -VDKLAVHFH-D-------------------------TYGQALANILVSLQMGISTVDSSVAGLGGCPYAKGASGNVATE 293 (347)
T ss_pred -CCeEEEEEC-C-------------------------CCChHHHHHHHHHHhCCCEEEEecccccCCCCCCCCCCChhHH
Confidence 223565431 1 23444777888899999975333347654 68998877
Q ss_pred HHHHHHhccC
Q 026320 171 IIAKVIGRLG 180 (240)
Q Consensus 171 ~v~~i~~~~~ 180 (240)
.+-..++.+|
T Consensus 294 ~lv~~L~~~G 303 (347)
T PLN02746 294 DVVYMLNGLG 303 (347)
T ss_pred HHHHHHHhcC
Confidence 7666665444
No 28
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=95.98 E-value=0.072 Score=50.33 Aligned_cols=144 Identities=19% Similarity=0.245 Sum_probs=103.8
Q ss_pred ccEEEecCccccccCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 026320 5 VDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 73 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~-----------~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd 73 (240)
+|.+-+...+|-++-+ +.+++-++.++++|..++.+ +|.+-...++.+.++.+.+.+.|.+.|-+.|
T Consensus 86 ~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~--~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~D 163 (365)
T TIGR02660 86 VDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVG--GEDASRADPDFLVELAEVAAEAGADRFRFAD 163 (365)
T ss_pred cCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEe--ecCCCCCCHHHHHHHHHHHHHcCcCEEEEcc
Confidence 4556666555543222 23558899999999988765 4555555667888999999999999999999
Q ss_pred CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEE
Q 026320 74 GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 153 (240)
Q Consensus 74 Gti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~V 153 (240)
-.--+.+.+-.++|+.+++. +.+ .+++.+ .. |...-+-.+...++|||++|
T Consensus 164 T~G~~~P~~v~~lv~~l~~~-~~v--~l~~H~-HN-------------------------d~GlA~ANalaA~~aGa~~v 214 (365)
T TIGR02660 164 TVGILDPFSTYELVRALRQA-VDL--PLEMHA-HN-------------------------DLGMATANTLAAVRAGATHV 214 (365)
T ss_pred cCCCCCHHHHHHHHHHHHHh-cCC--eEEEEe-cC-------------------------CCChHHHHHHHHHHhCCCEE
Confidence 99999999999999999874 122 244432 11 23344677778899999964
Q ss_pred EEecc--ccccCCCCccHHHHHHHH-hccCC
Q 026320 154 MIDSD--DVCKHADSLRADIIAKVI-GRLGL 181 (240)
Q Consensus 154 iiEar--gi~d~~g~~r~d~v~~i~-~~~~~ 181 (240)
++- |+=+..||...+.+-..+ ...|.
T Consensus 215 --d~tl~GiGeraGN~~lE~lv~~L~~~~g~ 243 (365)
T TIGR02660 215 --NTTVNGLGERAGNAALEEVAMALKRLLGR 243 (365)
T ss_pred --EEEeeccccccccCCHHHHHHHHHHhcCC
Confidence 765 888899998888776665 44443
No 29
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=95.97 E-value=0.17 Score=46.61 Aligned_cols=151 Identities=17% Similarity=0.244 Sum_probs=97.9
Q ss_pred EEecCccccccChhHHHHHHHHHHhCC--ceecCCcHHHHHHHhCCchHHHHHHHHHHcCC-CEEEecCCcc--------
Q 026320 8 LKFSGGSHSLMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGF-DTIELNVGSL-------- 76 (240)
Q Consensus 8 lKfg~GTs~l~p~~~l~eKi~l~~~~g--V~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF-~~IEISdGti-------- 76 (240)
+=||.||....|.+.|++.++.++++. +.++-+|=-+.. +...-+.++.+++.|+ ..||+.-=|.
T Consensus 81 iyf~ggt~t~l~~~~L~~l~~~i~~~~~~~~isi~trpd~l----~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i 156 (302)
T TIGR01212 81 AYFQAYTNTYAPVEVLKEMYEQALSYDDVVGLSVGTRPDCV----PDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKI 156 (302)
T ss_pred EEEECCCcCCCCHHHHHHHHHHHhCCCCEEEEEEEecCCcC----CHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHH
Confidence 458999999999999999999998753 122222211110 1133456666667799 4688743332
Q ss_pred --cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEE
Q 026320 77 --EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIM 154 (240)
Q Consensus 77 --~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~Vi 154 (240)
..+.++..+.+++++++|+++...+=+ +. |. ++.+++++.++...+.+.+.|-
T Consensus 157 ~Rg~t~~~~~~ai~~l~~~gi~v~~~lI~--Gl----------------Pg-------et~e~~~~t~~~l~~l~~d~i~ 211 (302)
T TIGR01212 157 NRGHDFACYVDAVKRARKRGIKVCSHVIL--GL----------------PG-------EDREEMMETAKIVSLLDVDGIK 211 (302)
T ss_pred cCcChHHHHHHHHHHHHHcCCEEEEeEEE--CC----------------CC-------CCHHHHHHHHHHHHhcCCCEEE
Confidence 235678889999999999987664433 21 10 1468889999999999999776
Q ss_pred E------ecccccc--CCCCcc-------HHHHHHHHhccCCCceEEe
Q 026320 155 I------DSDDVCK--HADSLR-------ADIIAKVIGRLGLEKTMFE 187 (240)
Q Consensus 155 i------Eargi~d--~~g~~r-------~d~v~~i~~~~~~~~lifE 187 (240)
+ ++-.+++ ..|.+. -+.+..+++.++++.+|+-
T Consensus 212 i~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~~~~~~l~~l~~~~~i~R 259 (302)
T TIGR01212 212 IHPLHVVKGTKMAKMYEKGELKTLSLEEYISLACDFLEHLPPEVVIHR 259 (302)
T ss_pred EEEEEecCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCcCeEEEE
Confidence 4 3222222 234443 3455667788998888776
No 30
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=95.94 E-value=0.2 Score=45.49 Aligned_cols=95 Identities=21% Similarity=0.293 Sum_probs=73.2
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 133 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 133 (240)
.++.++.+.+.|.+.|-|+...-++ +.-...|+.+++.|++|.. .+....+ + ..
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~~--~~~~~~i~~ak~~G~~v~~--~i~~~~~-------~---------------~~ 146 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALNDV--RNLEVAIKAVKKAGKHVEG--AICYTGS-------P---------------VH 146 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCChH--HHHHHHHHHHHHCCCeEEE--EEEecCC-------C---------------CC
Confidence 7889999999999999998766654 4456799999999987653 4421110 0 01
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 134 DVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
|++.+.+.++.-.++||+.|- +.|..|...+..+.++++.+
T Consensus 147 ~~~~~~~~~~~~~~~Ga~~i~-----l~DT~G~~~P~~v~~lv~~l 187 (275)
T cd07937 147 TLEYYVKLAKELEDMGADSIC-----IKDMAGLLTPYAAYELVKAL 187 (275)
T ss_pred CHHHHHHHHHHHHHcCCCEEE-----EcCCCCCCCHHHHHHHHHHH
Confidence 578999999999999999874 68999999999888888654
No 31
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=95.89 E-value=0.097 Score=48.13 Aligned_cols=129 Identities=18% Similarity=0.120 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhCCceec------CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCC
Q 026320 22 FIEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 95 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~------~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~ 95 (240)
.+++-|+.+|++|..+. .|..++.. -.++.+.++.+.+.++|.+.|-+.|-.--+.+.+-.++++.+++. +
T Consensus 121 ~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~-~ 197 (287)
T PRK05692 121 RFEPVAEAAKQAGVRVRGYVSCVLGCPYEGE--VPPEAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAE-F 197 (287)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEEecCCCCCC--CCHHHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHh-C
Confidence 47789999999999774 23333332 334578888999999999999999999999999999999999974 2
Q ss_pred cccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecccccc------CCCCccH
Q 026320 96 KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK------HADSLRA 169 (240)
Q Consensus 96 ~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d------~~g~~r~ 169 (240)
.. ..+++.+ .. |...-+..+-..++|||++|=.=--|+=. ..||.-.
T Consensus 198 ~~-~~i~~H~-Hn-------------------------~~Gla~AN~laA~~aG~~~id~s~~GlGecpfa~g~aGN~~~ 250 (287)
T PRK05692 198 PA-ERLAGHF-HD-------------------------TYGQALANIYASLEEGITVFDASVGGLGGCPYAPGASGNVAT 250 (287)
T ss_pred CC-CeEEEEe-cC-------------------------CCCcHHHHHHHHHHhCCCEEEEEccccCCCCCCCCccccccH
Confidence 11 1345533 11 22334677778899999974332236654 6799888
Q ss_pred HHHHHHHhccC
Q 026320 170 DIIAKVIGRLG 180 (240)
Q Consensus 170 d~v~~i~~~~~ 180 (240)
+.+-..++..|
T Consensus 251 E~lv~~L~~~g 261 (287)
T PRK05692 251 EDVLYMLHGLG 261 (287)
T ss_pred HHHHHHHHhcC
Confidence 87766665444
No 32
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=95.88 E-value=0.24 Score=44.87 Aligned_cols=143 Identities=15% Similarity=0.164 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSL----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 128 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti----~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 128 (240)
.+.++++++.+.|.+.|=+. ||. .|+.++|.++++.+.+. +..-+.+-. -++
T Consensus 23 ~l~~~i~~l~~~Gv~gi~~~-Gs~GE~~~ls~~Er~~~~~~~~~~---~~~~~~vi~---gv~----------------- 78 (292)
T PRK03170 23 ALRKLVDYLIANGTDGLVVV-GTTGESPTLTHEEHEELIRAVVEA---VNGRVPVIA---GTG----------------- 78 (292)
T ss_pred HHHHHHHHHHHcCCCEEEEC-CcCCccccCCHHHHHHHHHHHHHH---hCCCCcEEe---ecC-----------------
Confidence 68889999999999999884 665 99999999999999884 111111110 010
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccCC---C-CccHHHHHHHHhcc
Q 026320 129 TEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHA---D-SLRADIIAKVIGRL 179 (240)
Q Consensus 129 ~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~~---g-~~r~d~v~~i~~~~ 179 (240)
..+.++.++++++.-++||+.|++=.- -+|+.- | .+..+++.++. +.
T Consensus 79 ---~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~-~~ 154 (292)
T PRK03170 79 ---SNSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARLA-EH 154 (292)
T ss_pred ---CchHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHH-cC
Confidence 114688899999999999999999652 124321 2 34566666663 33
Q ss_pred CCCceEE--e-cCCchhHHHHHHHhCCCcccccCCCCchhhhhhhCccCC
Q 026320 180 GLEKTMF--E-ATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 180 ~~~~lif--E-AP~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G 226 (240)
| +++. + .++..+-..++++++++..++...++. -+.+++.|.-|
T Consensus 155 p--~v~giK~s~~d~~~~~~~~~~~~~~~~v~~G~d~~-~~~~l~~G~~G 201 (292)
T PRK03170 155 P--NIVGIKEATGDLERVSELIELVPDDFAVYSGDDAL-ALPFLALGGVG 201 (292)
T ss_pred C--CEEEEEECCCCHHHHHHHHHhCCCCeEEEECChHh-HHHHHHcCCCE
Confidence 2 2221 2 334455555666666655555444433 35666665544
No 33
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=95.88 E-value=0.059 Score=48.86 Aligned_cols=141 Identities=15% Similarity=0.193 Sum_probs=104.3
Q ss_pred CcccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhH
Q 026320 3 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEET 82 (240)
Q Consensus 3 ~yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~ 82 (240)
.-||.+.+++..+.+ +.+++-++.++++|..++.+ +|.+....++.+.++++.+.+.|.+.|-+.|-+-.+.+++
T Consensus 94 ~gv~~iri~~~~~~~---~~~~~~i~~ak~~G~~v~~~--~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~ 168 (266)
T cd07944 94 SVVDMIRVAFHKHEF---DEALPLIKAIKEKGYEVFFN--LMAISGYSDEELLELLELVNEIKPDVFYIVDSFGSMYPED 168 (266)
T ss_pred CCcCEEEEecccccH---HHHHHHHHHHHHCCCeEEEE--EEeecCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHH
Confidence 357888888766643 46899999999999987753 1112224556888999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--cc
Q 026320 83 LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DV 160 (240)
Q Consensus 83 r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi 160 (240)
-.++++.++++ +..-..++... -.|...-+......++|||++ |++- |+
T Consensus 169 v~~lv~~l~~~-~~~~~~i~~H~--------------------------Hn~~Gla~AN~laA~~aGa~~--vd~s~~G~ 219 (266)
T cd07944 169 IKRIISLLRSN-LDKDIKLGFHA--------------------------HNNLQLALANTLEAIELGVEI--IDATVYGM 219 (266)
T ss_pred HHHHHHHHHHh-cCCCceEEEEe--------------------------CCCccHHHHHHHHHHHcCCCE--EEEecccC
Confidence 99999999873 11001233322 123455577888889999975 6665 88
Q ss_pred ccCCCCccHHHHHHHHh
Q 026320 161 CKHADSLRADIIAKVIG 177 (240)
Q Consensus 161 ~d~~g~~r~d~v~~i~~ 177 (240)
=...||..++.+-..++
T Consensus 220 G~~aGN~~~E~~v~~l~ 236 (266)
T cd07944 220 GRGAGNLPTELLLDYLN 236 (266)
T ss_pred CCCcCcHHHHHHHHHHH
Confidence 88899999888766664
No 34
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=95.87 E-value=0.12 Score=46.86 Aligned_cols=125 Identities=14% Similarity=0.148 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhCCceecCC-c-HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 026320 22 FIEEVVKRAHQHDVYVSTG-D-WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 99 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~G-t-l~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~ 99 (240)
.+++-++++|++|..++.+ . +++. ....++.+.++++.+.+.|.+.|-|.|-.-.+.+++-.++++.++++ +. -.
T Consensus 120 ~~~~~i~~ak~~G~~v~~~~~~~~d~-~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~-~~ 196 (273)
T cd07941 120 MIRDSVAYLKSHGREVIFDAEHFFDG-YKANPEYALATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRER-LP-GV 196 (273)
T ss_pred HHHHHHHHHHHcCCeEEEeEEecccc-CCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHh-CC-CC
Confidence 4688999999999988774 2 3231 12234567788888899999999999999999999999999999884 11 01
Q ss_pred eeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCccHHHHHHHHh
Q 026320 100 KFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG 177 (240)
Q Consensus 100 E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~v~~i~~ 177 (240)
.++..+ .. |...-...+...++|||++ +++. |+=+..||...+.+-..+.
T Consensus 197 ~l~~H~-Hn-------------------------d~Gla~An~laA~~aGa~~--id~s~~GlGeraGn~~~e~~~~~L~ 248 (273)
T cd07941 197 PLGIHA-HN-------------------------DSGLAVANSLAAVEAGATQ--VQGTINGYGERCGNANLCSIIPNLQ 248 (273)
T ss_pred eeEEEe-cC-------------------------CCCcHHHHHHHHHHcCCCE--EEEeccccccccccccHHHHHHHHH
Confidence 244432 11 2334467778889999996 5665 8889999988876665554
No 35
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=95.84 E-value=0.29 Score=44.63 Aligned_cols=143 Identities=18% Similarity=0.169 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 126 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 126 (240)
.++++++++.+-|.+.|=+.-.| ..|+.++|.++++.+.+. | +.|+ +|+
T Consensus 22 ~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi--~gv----------------------- 76 (289)
T cd00951 22 AYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVL--AGA----------------------- 76 (289)
T ss_pred HHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEE--Eec-----------------------
Confidence 67888999999999999765433 589999999999998884 1 1111 111
Q ss_pred CCcccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccCCC-CccHHHHHHHHhccC
Q 026320 127 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHAD-SLRADIIAKVIGRLG 180 (240)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~~g-~~r~d~v~~i~~~~~ 180 (240)
+. +..+.++.+++.-++||+.|++=.- -+|+..| .+..+++.++.++.+
T Consensus 77 ----~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~~~p 151 (289)
T cd00951 77 ----GY-GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAERCP 151 (289)
T ss_pred ----CC-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHhcCC
Confidence 01 3577899999999999999998541 2587766 577888888875344
Q ss_pred CCceEE--e-cCCchhHHHHHHHhCCCcccccCC--CCchhhhhhhCccCCC
Q 026320 181 LEKTMF--E-ATNPRTSEWFIRRYGPKVNLFVDH--SQVMDLECLRGRNLGK 227 (240)
Q Consensus 181 ~~~lif--E-AP~k~qQ~~~I~~fG~~VNLgI~~--~dVl~LE~LR~~~~G~ 227 (240)
+++. + .++-.+...+++.++.+..++.-+ .|.+.+++++.|--|-
T Consensus 152 --nivgiKds~~d~~~~~~~~~~~~~~~~v~~G~~~~d~~~~~~l~~Ga~G~ 201 (289)
T cd00951 152 --NLVGFKDGVGDIELMRRIVAKLGDRLLYLGGLPTAEVFALAYLAMGVPTY 201 (289)
T ss_pred --CEEEEEeCCCCHHHHHHHHHhcCCCeEEEeCCCcchHhHHHHHHCCCCEE
Confidence 3332 3 455566677788887766554333 5888888888775453
No 36
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=95.74 E-value=0.14 Score=46.10 Aligned_cols=146 Identities=18% Similarity=0.156 Sum_probs=103.3
Q ss_pred ccEEEecCcccccc-----------ChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 026320 5 VDGLKFSGGSHSLM-----------PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 73 (240)
Q Consensus 5 ID~lKfg~GTs~l~-----------p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd 73 (240)
+|.+.+...+|-.. .-+.+.+-++.++++|..++.+. |.+-...++.+.++.+.+.++|.+.|-+.|
T Consensus 87 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~--~~~~~~~~~~~~~~~~~~~~~G~~~i~l~D 164 (268)
T cd07940 87 VDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSA--EDATRTDLDFLIEVVEAAIEAGATTINIPD 164 (268)
T ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEee--ecCCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 67777766554332 11457788999999999887542 222233445778888999999999999999
Q ss_pred CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEE
Q 026320 74 GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 153 (240)
Q Consensus 74 Gti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~V 153 (240)
-+-.+.+++-.++++.++++==..-..++..+ -.|...-+..+...+++||++|
T Consensus 165 T~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~--------------------------Hn~~GlA~An~laAi~aG~~~i 218 (268)
T cd07940 165 TVGYLTPEEFGELIKKLKENVPNIKVPISVHC--------------------------HNDLGLAVANSLAAVEAGARQV 218 (268)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCceeEEEEe--------------------------cCCcchHHHHHHHHHHhCCCEE
Confidence 99999999999999999984100001233322 1134455777788899999964
Q ss_pred EEecc--ccccCCCCccHHHHHHHHhccC
Q 026320 154 MIDSD--DVCKHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 154 iiEar--gi~d~~g~~r~d~v~~i~~~~~ 180 (240)
++. |+=+..||..++.+-..+...+
T Consensus 219 --D~s~~GlG~~aGN~~tE~lv~~L~~~~ 245 (268)
T cd07940 219 --ECTINGIGERAGNAALEEVVMALKTRY 245 (268)
T ss_pred --EEEeeccccccccccHHHHHHHHHhcc
Confidence 775 7778899999988777775543
No 37
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=95.73 E-value=0.37 Score=44.01 Aligned_cols=143 Identities=17% Similarity=0.164 Sum_probs=100.5
Q ss_pred chHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccC
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 125 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdG---ti~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 125 (240)
+.+.+.++++.+.|++.|=+.-. +..|+.++|.++++.+.+. | +.|+ +|+ |
T Consensus 26 ~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi--~gv-------~-------------- 82 (296)
T TIGR03249 26 AAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVY--TGV-------G-------------- 82 (296)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEE--Eec-------C--------------
Confidence 36888999999999999987433 2689999999999998873 1 1111 111 0
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccCCC-CccHHHHHHHHhcc
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHAD-SLRADIIAKVIGRL 179 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~~g-~~r~d~v~~i~~~~ 179 (240)
.+..+.++.++..-++||+.|++=.- =+|+..| ++..+++.+++++.
T Consensus 83 -------~~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~~~ 155 (296)
T TIGR03249 83 -------GNTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLADRC 155 (296)
T ss_pred -------ccHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHhhC
Confidence 13678899999999999999998552 1477656 67788888887655
Q ss_pred CCCceEE---ecCCchhHHHHHHHhCCCcccc--cCCCCchhhhhhhCccCC
Q 026320 180 GLEKTMF---EATNPRTSEWFIRRYGPKVNLF--VDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 180 ~~~~lif---EAP~k~qQ~~~I~~fG~~VNLg--I~~~dVl~LE~LR~~~~G 226 (240)
+ +++. ..++..+...++++++++..+. -+..|.+.++++..|--|
T Consensus 156 ~--nvvgiKds~~d~~~~~~~~~~~~~~~~v~~G~~~~d~~~~~~~~~Ga~G 205 (296)
T TIGR03249 156 P--NLVGFKDGIGDMEQMIEITQRLGDRLGYLGGMPTAEVTAPAYLPLGVTS 205 (296)
T ss_pred C--CEEEEEeCCCCHHHHHHHHHHcCCCeEEEeCCCcchhhHHHHHhCCCCE
Confidence 5 3332 4567777778888888766554 333577788887755433
No 38
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=95.72 E-value=0.094 Score=50.49 Aligned_cols=127 Identities=11% Similarity=0.226 Sum_probs=88.2
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc------
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE------ 77 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~------ 77 (240)
+.-+=||+||..+++.+.|++-++.++++- .+.++. .|+.+.-+|+.+ ++.++.++++||+.|.|+--|.+
T Consensus 92 i~~i~~GGGTPs~l~~~~l~~Ll~~i~~~~-~~~~~~-~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~ 169 (430)
T PRK08208 92 FASFAVGGGTPTLLNAAELEKLFDSVERVL-GVDLGN-IPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHA 169 (430)
T ss_pred eeEEEEcCCccccCCHHHHHHHHHHHHHhC-CCCCCC-ceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHH
Confidence 556779999999999999999999997642 122211 133333334343 78999999999999999776662
Q ss_pred ----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEE
Q 026320 78 ----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 153 (240)
Q Consensus 78 ----l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~V 153 (240)
-+.++-.+.|+.+++.||.+.. +....+. |. +|++.+.+.++..++.|.+.|
T Consensus 170 l~R~~~~~~~~~ai~~l~~~g~~~i~-~dlI~Gl----------------P~-------qt~e~~~~~l~~~~~l~~~~i 225 (430)
T PRK08208 170 LHRPQKRADVHQALEWIRAAGFPILN-IDLIYGI----------------PG-------QTHASWMESLDQALVYRPEEL 225 (430)
T ss_pred hCCCCCHHHHHHHHHHHHHcCCCeEE-EEeecCC----------------CC-------CCHHHHHHHHHHHHhCCCCEE
Confidence 2456677899999999987421 2232221 11 257888899999999999987
Q ss_pred EEec
Q 026320 154 MIDS 157 (240)
Q Consensus 154 iiEa 157 (240)
-+=.
T Consensus 226 s~y~ 229 (430)
T PRK08208 226 FLYP 229 (430)
T ss_pred EEcc
Confidence 6544
No 39
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=95.67 E-value=0.059 Score=50.45 Aligned_cols=125 Identities=14% Similarity=0.251 Sum_probs=88.3
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc------
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE------ 77 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~------ 77 (240)
|+.+=||+||..+.+++.|.+.++..+++- .+.++ .|+.+.-+|+.+ ++.++.++++|++.|.|+--+.+
T Consensus 52 v~~i~~GGGtPs~l~~~~l~~ll~~i~~~~-~~~~~--~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~ 128 (360)
T TIGR00539 52 LESIFIGGGTPNTLSVEAFERLFESIYQHA-SLSDD--CEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLF 128 (360)
T ss_pred ccEEEeCCCchhcCCHHHHHHHHHHHHHhC-CCCCC--CEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHH
Confidence 678889999999999999999999987641 11122 344443444443 58899999999999998876652
Q ss_pred ----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEE
Q 026320 78 ----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 153 (240)
Q Consensus 78 ----l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~V 153 (240)
-+.++-.+.|+.+++.||.... +....+. |. ++.+++.+.++..++.|++.|
T Consensus 129 lgR~~~~~~~~~ai~~l~~~G~~~v~-~dli~Gl----------------Pg-------qt~~~~~~~l~~~~~l~~~~i 184 (360)
T TIGR00539 129 LGRQHSAKNIAPAIETALKSGIENIS-LDLMYGL----------------PL-------QTLNSLKEELKLAKELPINHL 184 (360)
T ss_pred hCCCCCHHHHHHHHHHHHHcCCCeEE-EeccCCC----------------CC-------CCHHHHHHHHHHHHccCCCEE
Confidence 4567778899999999986221 1111111 11 257888899999999999988
Q ss_pred EEe
Q 026320 154 MID 156 (240)
Q Consensus 154 iiE 156 (240)
-+=
T Consensus 185 s~y 187 (360)
T TIGR00539 185 SAY 187 (360)
T ss_pred Eee
Confidence 553
No 40
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=95.65 E-value=0.27 Score=44.13 Aligned_cols=123 Identities=19% Similarity=0.235 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc-----------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS-----------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 121 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt-----------i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~ 121 (240)
.+.+.++.+.+.|..+|=|-|++ --+|.+++.+.|+.+++.-=.. ++|-+-- .+ |. +
T Consensus 85 ~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~-~~~~IiA---RT----Da-~--- 152 (243)
T cd00377 85 NVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDL-PDFVIIA---RT----DA-L--- 152 (243)
T ss_pred HHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhcc-CCeEEEE---Ec----Cc-h---
Confidence 34455667777999999996655 4679999999999988841111 4555522 11 11 0
Q ss_pred cccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCch-hHHHHHHH
Q 026320 122 VARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPR-TSEWFIRR 200 (240)
Q Consensus 122 ~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifEAP~k~-qQ~~~I~~ 200 (240)
.. +..+.++.|+++++..+||||.|++++-- ..+.+.++.+.++.--++.-.|..+ ....=+.+
T Consensus 153 ~~-------~~~~~~eai~Ra~ay~~AGAD~v~v~~~~--------~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l~~ 217 (243)
T cd00377 153 LA-------GEEGLDEAIERAKAYAEAGADGIFVEGLK--------DPEEIRAFAEAPDVPLNVNMTPGGNLLTVAELAE 217 (243)
T ss_pred hc-------cCCCHHHHHHHHHHHHHcCCCEEEeCCCC--------CHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHH
Confidence 00 01247899999999999999999999752 5688888988877555555555543 23333344
Q ss_pred hC
Q 026320 201 YG 202 (240)
Q Consensus 201 fG 202 (240)
.|
T Consensus 218 lG 219 (243)
T cd00377 218 LG 219 (243)
T ss_pred CC
Confidence 44
No 41
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=95.60 E-value=0.56 Score=43.11 Aligned_cols=146 Identities=17% Similarity=0.130 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 129 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 129 (240)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. .+-+.+.- +|.
T Consensus 29 ~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~-------~~~~~pvi-~gv----------------- 83 (303)
T PRK03620 29 AYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVET-------TAGRVPVI-AGA----------------- 83 (303)
T ss_pred HHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHH-------hCCCCcEE-Eec-----------------
Confidence 68888999999999999774433 589999999999988773 21111000 000
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccCCC-CccHHHHHHHHhccCCCc
Q 026320 130 EYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHAD-SLRADIIAKVIGRLGLEK 183 (240)
Q Consensus 130 ~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~~g-~~r~d~v~~i~~~~~~~~ 183 (240)
+. +..+.++.+++.-++||+.|++=.- -+|+..| .+-.+++.++.++.+ +
T Consensus 84 -~~-~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~~~~p--n 159 (303)
T PRK03620 84 -GG-GTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLAERCP--N 159 (303)
T ss_pred -CC-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHhhCC--C
Confidence 01 3578899999999999999998652 2577666 677888888875554 4
Q ss_pred eEE---ecCCchhHHHHHHHhCCCcccc--cCCCCchhhhhhhCccCCC
Q 026320 184 TMF---EATNPRTSEWFIRRYGPKVNLF--VDHSQVMDLECLRGRNLGK 227 (240)
Q Consensus 184 lif---EAP~k~qQ~~~I~~fG~~VNLg--I~~~dVl~LE~LR~~~~G~ 227 (240)
++. ..++..+...++++++++..+. -+..|.+.+.++..|.-|-
T Consensus 160 i~giK~s~~d~~~~~~~~~~~~~~f~vl~G~d~~e~~~~~~~~~G~~G~ 208 (303)
T PRK03620 160 LVGFKDGVGDIELMQRIVRALGDRLLYLGGLPTAEVFAAAYLALGVPTY 208 (303)
T ss_pred EEEEEeCCCCHHHHHHHHHHcCCCeEEEeCCCcchhhHHHHHhCCCCEE
Confidence 443 3567777788888888876654 4445777788887665443
No 42
>PRK01060 endonuclease IV; Provisional
Probab=95.52 E-value=0.26 Score=43.70 Aligned_cols=148 Identities=15% Similarity=0.244 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cc---cCChhHHHHHHHHHHHcCCcccceeeeecCCC-CCCCccccccccccccC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVG---SL---EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKS-DIPSDRDRAFGAYVARA 125 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdG---ti---~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~-evg~~~d~~~~~~~~~~ 125 (240)
.+++.++.++++||++||+.-+ +. .++++...++-+.+++.|+++.+ +.+..+.. ... ..|+
T Consensus 13 ~~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~-~~~h~~~~~nl~-~~d~--------- 81 (281)
T PRK01060 13 GLEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPED-ILVHAPYLINLG-NPNK--------- 81 (281)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCc-eEEecceEecCC-CCCH---------
Confidence 3778889999999999999753 22 45666777777788898998421 11211110 010 1111
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCC--cc---HHHHHHHHhccCCCceEEecC---------Cc
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADS--LR---ADIIAKVIGRLGLEKTMFEAT---------NP 191 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~--~r---~d~v~~i~~~~~~~~lifEAP---------~k 191 (240)
.....+.+.+.+.++..-+.||..|++-.-..+..... .. .+.+.++++.-.-=+|.+|.- ..
T Consensus 82 ---~~r~~s~~~~~~~i~~A~~lga~~vv~h~G~~~~~~~~~~~~~~~~e~l~~l~~~~~gv~l~iEn~~~~~~~~~~~~ 158 (281)
T PRK01060 82 ---EILEKSRDFLIQEIERCAALGAKLLVFHPGSHLGDIDEEDCLARIAESLNEALDKTQGVTIVLENTAGQGSELGRRF 158 (281)
T ss_pred ---HHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcHHHHHHHHHHHHHHHHhcCCCCEEEEecCCCCCCcccCCH
Confidence 01112345666666666788999999865322211110 00 113333432212235788862 23
Q ss_pred hhHHHHHHHhCCC--cccccCCCCc
Q 026320 192 RTSEWFIRRYGPK--VNLFVDHSQV 214 (240)
Q Consensus 192 ~qQ~~~I~~fG~~--VNLgI~~~dV 214 (240)
.+-..+++.++.. |.+.+|..++
T Consensus 159 ~~~~~l~~~v~~~~~vg~~lD~gH~ 183 (281)
T PRK01060 159 EELARIIDGVEDKSRVGVCLDTCHA 183 (281)
T ss_pred HHHHHHHHhcCCcccEEEEEeHHhH
Confidence 4566788888753 4444665544
No 43
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=95.44 E-value=0.094 Score=49.63 Aligned_cols=124 Identities=15% Similarity=0.229 Sum_probs=83.5
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHH-HHHHHHHHcCCCEEEecCCcc------
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFK-EYVEDCKQVGFDTIELNVGSL------ 76 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~-~yl~~~k~lGF~~IEISdGti------ 76 (240)
-|+-+=||+||..+.|.+.|++.++.++++= .+ ..-.|+.+.-+|+.++ ++++.+++.||+.|.+---|.
T Consensus 55 ~i~tiy~GGGTPs~l~~~~L~~ll~~i~~~f-~~--~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~ 131 (380)
T PRK09057 55 TLTSIFFGGGTPSLMQPETVAALLDAIARLW-PV--ADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLR 131 (380)
T ss_pred CcCeEEeCCCccccCCHHHHHHHHHHHHHhC-CC--CCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 3677889999999999999999999998731 11 1113544444555544 899999999999888754444
Q ss_pred ----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcE
Q 026320 77 ----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 152 (240)
Q Consensus 77 ----~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ 152 (240)
.-+.++-.+.++.+++.+..+-..+ ..+. |. ++.+.+.+.++..++.+.++
T Consensus 132 ~l~R~~~~~~~~~ai~~~~~~~~~v~~dl--i~Gl----------------Pg-------qt~~~~~~~l~~~~~l~p~~ 186 (380)
T PRK09057 132 FLGRLHSVAEALAAIDLAREIFPRVSFDL--IYAR----------------PG-------QTLAAWRAELKEALSLAADH 186 (380)
T ss_pred HcCCCCCHHHHHHHHHHHHHhCccEEEEe--ecCC----------------CC-------CCHHHHHHHHHHHHhcCCCe
Confidence 2244555677888888744322221 1111 11 24678888899999999997
Q ss_pred EEE
Q 026320 153 IMI 155 (240)
Q Consensus 153 Vii 155 (240)
|-+
T Consensus 187 is~ 189 (380)
T PRK09057 187 LSL 189 (380)
T ss_pred EEe
Confidence 644
No 44
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=95.39 E-value=0.19 Score=46.64 Aligned_cols=114 Identities=17% Similarity=0.272 Sum_probs=74.9
Q ss_pred cChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcc
Q 026320 18 MPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 97 (240)
Q Consensus 18 ~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v 97 (240)
++.+.|++-|+.+++.-=.++.-.++ +... ..++.++.+.+.|.+.|.++-|. |. ++|+++++.|.++
T Consensus 45 ~~~~~l~~~i~~~~~~t~~pfgvn~~---~~~~--~~~~~~~~~~~~~v~~v~~~~g~---p~----~~i~~lk~~g~~v 112 (307)
T TIGR03151 45 APPDVVRKEIRKVKELTDKPFGVNIM---LLSP--FVDELVDLVIEEKVPVVTTGAGN---PG----KYIPRLKENGVKV 112 (307)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEeee---cCCC--CHHHHHHHHHhCCCCEEEEcCCC---cH----HHHHHHHHcCCEE
Confidence 56788999999998742122211221 1122 56788999999999999998663 32 5899999988776
Q ss_pred cceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCc-cHHHHHH
Q 026320 98 KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSL-RADIIAK 174 (240)
Q Consensus 98 ~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~-r~d~v~~ 174 (240)
.+.++ + ++.+++..++|||.|+++++ |-+. |.. ..+++.+
T Consensus 113 ~~~v~-------------------------------s----~~~a~~a~~~GaD~Ivv~g~eagGh~--g~~~~~~ll~~ 155 (307)
T TIGR03151 113 IPVVA-------------------------------S----VALAKRMEKAGADAVIAEGMESGGHI--GELTTMALVPQ 155 (307)
T ss_pred EEEcC-------------------------------C----HHHHHHHHHcCCCEEEEECcccCCCC--CCCcHHHHHHH
Confidence 64221 1 45567778999999999887 2221 222 3566677
Q ss_pred HHhccC
Q 026320 175 VIGRLG 180 (240)
Q Consensus 175 i~~~~~ 180 (240)
+.+.++
T Consensus 156 v~~~~~ 161 (307)
T TIGR03151 156 VVDAVS 161 (307)
T ss_pred HHHHhC
Confidence 765543
No 45
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=95.38 E-value=0.23 Score=45.31 Aligned_cols=128 Identities=20% Similarity=0.197 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHhCCceec------CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcC
Q 026320 21 PFIEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAG 94 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~v~------~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G 94 (240)
+.+.+.++.++++|..+. .|..++--. .++.+.++.+.+.++|.+.|-+.|-+-.+.+.+-.++|+.++++
T Consensus 114 ~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~--~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~- 190 (274)
T cd07938 114 ERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEV--PPERVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLER- 190 (274)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCC--CHHHHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHH-
Confidence 456677999999999873 222222111 33477788889999999999999999999999999999999985
Q ss_pred CcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccc------cCCCC
Q 026320 95 LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVC------KHADS 166 (240)
Q Consensus 95 ~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~------d~~g~ 166 (240)
+. ..++++.. .. |...-+-.+...++|||++ +++- |+= +..||
T Consensus 191 ~~-~~~i~~H~-Hn-------------------------d~GlA~AN~laA~~aGa~~--id~t~~GlGgcpfa~eraGN 241 (274)
T cd07938 191 FP-DEKLALHF-HD-------------------------TRGQALANILAALEAGVRR--FDSSVGGLGGCPFAPGATGN 241 (274)
T ss_pred CC-CCeEEEEE-CC-------------------------CCChHHHHHHHHHHhCCCE--EEEeccccCCCCCCCCccCC
Confidence 21 12355533 11 2344477788889999995 5664 553 56899
Q ss_pred ccHHHHHHHHhccC
Q 026320 167 LRADIIAKVIGRLG 180 (240)
Q Consensus 167 ~r~d~v~~i~~~~~ 180 (240)
...+.+-..++..|
T Consensus 242 ~~~E~lv~~L~~~g 255 (274)
T cd07938 242 VATEDLVYMLEGMG 255 (274)
T ss_pred cCHHHHHHHHHhcC
Confidence 99887766666544
No 46
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=95.37 E-value=0.28 Score=44.15 Aligned_cols=116 Identities=18% Similarity=0.241 Sum_probs=78.2
Q ss_pred EEecCccccccChhHHHHHHHHHHhCCceec----CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHH
Q 026320 8 LKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETL 83 (240)
Q Consensus 8 lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~----~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r 83 (240)
.|-|.|++.+.+++.+.+-++..++.+++|+ +| + ......++.+.+.+.|.+.|-|..++-.-+..+
T Consensus 108 ~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~-~-------~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~- 178 (231)
T TIGR00736 108 TEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGN-C-------IPLDELIDALNLVDDGFDGIHVDAMYPGKPYAD- 178 (231)
T ss_pred cCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCC-C-------CcchHHHHHHHHHHcCCCEEEEeeCCCCCchhh-
Confidence 3558889999999999999999998888766 34 2 111345778889999999999965443222223
Q ss_pred HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccC
Q 026320 84 LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH 163 (240)
Q Consensus 84 ~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~ 163 (240)
.++|+++++. +..+|=+|. + .+ .+ .+.+.+.|++||+.||+ +|++..+
T Consensus 179 ~~~I~~i~~~-~~~ipIIgN---G-gI----------------------~s----~eda~e~l~~GAd~Vmv-gR~~l~~ 226 (231)
T TIGR00736 179 MDLLKILSEE-FNDKIIIGN---N-SI----------------------DD----IESAKEMLKAGADFVSV-ARAILKG 226 (231)
T ss_pred HHHHHHHHHh-cCCCcEEEE---C-Cc----------------------CC----HHHHHHHHHhCCCeEEE-cHhhccC
Confidence 5889998884 111444443 1 11 12 45666777789999998 5566544
Q ss_pred C
Q 026320 164 A 164 (240)
Q Consensus 164 ~ 164 (240)
+
T Consensus 227 ~ 227 (231)
T TIGR00736 227 N 227 (231)
T ss_pred C
Confidence 3
No 47
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=95.36 E-value=0.38 Score=45.16 Aligned_cols=124 Identities=15% Similarity=0.257 Sum_probs=86.8
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc------
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL------ 76 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti------ 76 (240)
|+.+=||+||..+.+++.|++.++.++++ ++. + ..|+.+.-+|+. -++.++.+++.|++.|.|+--|.
T Consensus 52 i~~i~~gGGtpt~l~~~~l~~ll~~i~~~~~~~--~--~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~ 127 (377)
T PRK08599 52 LKTIYIGGGTPTALSAEQLERLLTAIHRNLPLS--G--LEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLK 127 (377)
T ss_pred eeEEEeCCCCcccCCHHHHHHHHHHHHHhCCCC--C--CCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 55677899999999999999999999886 321 0 012222222222 36889999999999999987776
Q ss_pred ----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcE
Q 026320 77 ----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 152 (240)
Q Consensus 77 ----~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ 152 (240)
..+.++..+.|+.+++.|+.... +....+. |. +|.+++.+.++...+.|.+.
T Consensus 128 ~l~r~~~~~~~~~~i~~l~~~g~~~v~-~dli~Gl----------------Pg-------qt~~~~~~~l~~~~~l~~~~ 183 (377)
T PRK08599 128 KIGRTHNEEDVYEAIANAKKAGFDNIS-IDLIYAL----------------PG-------QTIEDFKESLAKALALDIPH 183 (377)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCCcEE-EeeecCC----------------CC-------CCHHHHHHHHHHHHccCCCE
Confidence 35677888999999999986321 2222221 10 24688888888889999998
Q ss_pred EEEe
Q 026320 153 IMID 156 (240)
Q Consensus 153 ViiE 156 (240)
|.+=
T Consensus 184 i~~y 187 (377)
T PRK08599 184 YSAY 187 (377)
T ss_pred Eeee
Confidence 7553
No 48
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=95.35 E-value=0.25 Score=45.32 Aligned_cols=123 Identities=17% Similarity=0.222 Sum_probs=90.8
Q ss_pred HHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccce
Q 026320 23 IEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPK 100 (240)
Q Consensus 23 l~eKi~l~~~~gV~v~~G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E 100 (240)
+++-++.++++|..+..+ +|.- .+.-.++.+.++.+.+.++|.+.|-+.|-.--+.+.+-.++++.+++. + ....
T Consensus 117 ~~~~i~~a~~~G~~v~~~~~d~~~-~~r~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~-~-~~~~ 193 (280)
T cd07945 117 IREVIEYAIKNGIEVNIYLEDWSN-GMRDSPDYVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVKR-Y-PNLH 193 (280)
T ss_pred HHHHHHHHHhCCCEEEEEEEeCCC-CCcCCHHHHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhh-C-CCCe
Confidence 566689999999977754 3221 113456688999999999999999999999999999999999999873 1 1123
Q ss_pred eeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCccHHHHHHHH
Q 026320 101 FAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVI 176 (240)
Q Consensus 101 ~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~v~~i~ 176 (240)
++..+ . .|...-+..+...++|||++ +++- |+=+..||...+.+-..+
T Consensus 194 i~~H~-H-------------------------nd~Gla~AN~laA~~aGa~~--vd~s~~GlGe~aGN~~~E~~v~~L 243 (280)
T cd07945 194 FDFHA-H-------------------------NDYDLAVANVLAAVKAGIKG--LHTTVNGLGERAGNAPLASVIAVL 243 (280)
T ss_pred EEEEe-C-------------------------CCCCHHHHHHHHHHHhCCCE--EEEecccccccccCccHHHHHHHH
Confidence 44432 1 12344577788889999995 6665 787889998887776655
No 49
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=95.26 E-value=0.25 Score=46.71 Aligned_cols=125 Identities=16% Similarity=0.205 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccce
Q 026320 21 PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPK 100 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E 100 (240)
+.+.+-++.++++|..++.+ +|.+....++.+.++++.+.++|.+.|-+.|-+-.+.+++-.++|+.++++ +.+ .
T Consensus 112 ~~~~~~i~~ak~~G~~v~~~--~eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~-~~~--~ 186 (363)
T TIGR02090 112 EKAVEAVEYAKEHGLIVEFS--AEDATRTDIDFLIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKEN-VKL--P 186 (363)
T ss_pred HHHHHHHHHHHHcCCEEEEE--EeecCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcc-cCc--e
Confidence 35668888999999877643 234444556678888888999999999999999999999999999999874 122 2
Q ss_pred eeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCccHHHHHHHHhc
Q 026320 101 FAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGR 178 (240)
Q Consensus 101 ~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~v~~i~~~ 178 (240)
++..+ .. |...-+-.+...++|||++ |++- |+=+..||...+.+-..+..
T Consensus 187 l~~H~-Hn-------------------------d~GlA~AN~laA~~aGa~~--vd~s~~GlGeraGN~~lE~vv~~L~~ 238 (363)
T TIGR02090 187 ISVHC-HN-------------------------DFGLATANSIAGVKAGAEQ--VHVTVNGIGERAGNAALEEVVMALKY 238 (363)
T ss_pred EEEEe-cC-------------------------CCChHHHHHHHHHHCCCCE--EEEEeeccccccccccHHHHHHHHHH
Confidence 44432 11 2233466777889999987 5554 88899999998876666544
No 50
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=95.20 E-value=0.58 Score=41.30 Aligned_cols=145 Identities=14% Similarity=0.180 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCC-CccccccccccccCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSL-----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIP-SDRDRAFGAYVARAP 126 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti-----~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg-~~~d~~~~~~~~~~~ 126 (240)
.+.+-++.++++||++||+..+.. +++.....++-+.+++.|+++.+ ++.-....... ...++
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s-~~~~~~~~~~~~~~~~~---------- 82 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIG-YTPETNGYPYNMMLGDE---------- 82 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEE-ecCcccCcCccccCCCH----------
Confidence 689999999999999999965421 34455667788888899998754 22100000000 00010
Q ss_pred CCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCcc------HHHHHHHHhccCCCceEEec--C-------
Q 026320 127 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLR------ADIIAKVIGRLGLEKTMFEA--T------- 189 (240)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r------~d~v~~i~~~~~~~~lifEA--P------- 189 (240)
.......+.+.+.++.+-..||..|++-+- +........+ -..+.+++++.|+ +|.+|. |
T Consensus 83 --~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~l~iE~~~~~~~~~~~ 159 (275)
T PRK09856 83 --HMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGM-DLILEPLTPYESNVVC 159 (275)
T ss_pred --HHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-EEEEecCCCCcccccC
Confidence 001123456666777777899999988652 1111111111 1223344455565 577885 2
Q ss_pred CchhHHHHHHHhC-CCcccccCC
Q 026320 190 NPRTSEWFIRRYG-PKVNLFVDH 211 (240)
Q Consensus 190 ~k~qQ~~~I~~fG-~~VNLgI~~ 211 (240)
.+..-..+++..+ |+|-+.+|+
T Consensus 160 t~~~~~~l~~~~~~~~v~~~~D~ 182 (275)
T PRK09856 160 NANDVLHALALVPSPRLFSMVDI 182 (275)
T ss_pred CHHHHHHHHHHcCCCcceeEEee
Confidence 3567888999998 566443443
No 51
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=95.12 E-value=0.3 Score=44.36 Aligned_cols=123 Identities=15% Similarity=0.134 Sum_probs=91.7
Q ss_pred HHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 026320 22 FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 101 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~ 101 (240)
.+++-++.++++|+.++.+- |-+..-.++.+.++++.+.++|.+.|-+.|-+--+.+++-.++++.+++. +. .++
T Consensus 113 ~~~~~i~~a~~~G~~v~~~~--eda~r~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~-~~--~~i 187 (262)
T cd07948 113 SAVEVIEFVKSKGIEVRFSS--EDSFRSDLVDLLRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGV-VS--CDI 187 (262)
T ss_pred HHHHHHHHHHHCCCeEEEEE--EeeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHh-cC--CeE
Confidence 45666799999998777531 22333334578899999999999999999999999999999999999885 22 345
Q ss_pred eeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCccHHHHHHHHh
Q 026320 102 AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG 177 (240)
Q Consensus 102 g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~v~~i~~ 177 (240)
+..+. . |...-+-.+...++|||++ +++. |+=+..||.-.+.+-..+.
T Consensus 188 ~~H~H-n-------------------------~~Gla~an~~~a~~aG~~~--vd~s~~GlGeraGn~~~e~~~~~l~ 237 (262)
T cd07948 188 EFHGH-N-------------------------DTGCAIANAYAALEAGATH--IDTTVLGIGERNGITPLGGLIARMY 237 (262)
T ss_pred EEEEC-C-------------------------CCChHHHHHHHHHHhCCCE--EEEeccccccccCCccHHHHHHHHH
Confidence 55431 1 1233367777889999995 7776 9999999998877766654
No 52
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=95.11 E-value=0.21 Score=46.82 Aligned_cols=123 Identities=14% Similarity=0.242 Sum_probs=84.5
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCc-hHHHHHHHHHHcCCCEEEecCCccc------
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPS-AFKEYVEDCKQVGFDTIELNVGSLE------ 77 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~-~~~~yl~~~k~lGF~~IEISdGti~------ 77 (240)
++.+=||+||..+.+++.+++-.+..+++++. ++. |+.+.-+|+ --++.++.+++.|++.|.|+--+.+
T Consensus 52 ~~~i~~gGGtps~l~~~~l~~L~~~i~~~~~~--~~~--eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~ 127 (374)
T PRK05799 52 IKSIFIGGGTPTYLSLEALEILKETIKKLNKK--EDL--EFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKY 127 (374)
T ss_pred eeEEEECCCcccCCCHHHHHHHHHHHHhCCCC--CCC--EEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHH
Confidence 66788999999999999898888887765542 221 333222332 3468999999999999988765552
Q ss_pred ----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEE
Q 026320 78 ----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 153 (240)
Q Consensus 78 ----l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~V 153 (240)
-+.++-.+.|+.+++.||.... +....+. |. ++.+++.+.++..++.|.+.|
T Consensus 128 l~R~~~~~~~~~ai~~l~~~g~~~v~-~dli~Gl----------------Pg-------qt~e~~~~~l~~~~~l~~~~i 183 (374)
T PRK05799 128 LGRIHTFEEFLENYKLARKLGFNNIN-VDLMFGL----------------PN-------QTLEDWKETLEKVVELNPEHI 183 (374)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCcEE-EEeecCC----------------CC-------CCHHHHHHHHHHHHhcCCCEE
Confidence 3456677889999999886221 2322221 11 257888899999999999987
Q ss_pred EE
Q 026320 154 MI 155 (240)
Q Consensus 154 ii 155 (240)
-+
T Consensus 184 s~ 185 (374)
T PRK05799 184 SC 185 (374)
T ss_pred EE
Confidence 44
No 53
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=95.01 E-value=0.61 Score=43.16 Aligned_cols=101 Identities=23% Similarity=0.311 Sum_probs=69.5
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc--------------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccc
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGS--------------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRA 117 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGt--------------i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~ 117 (240)
..+.+.++++.+.|...|=|-|.+ --+|.+++.+.|+.+++. +.-++|-+- ..+ |.
T Consensus 92 ~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a--~~~~~~~Ii---ART----Da- 161 (285)
T TIGR02320 92 EHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDA--QTTEDFMII---ARV----ES- 161 (285)
T ss_pred HHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHh--ccCCCeEEE---Eec----cc-
Confidence 356677788888999999996643 357999999999999885 122344441 111 11
Q ss_pred cccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 026320 118 FGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~ 180 (240)
. +.. ...++.|+++++..+||||.|++++ +....+.+.++.+.++
T Consensus 162 ---~-----~~~---~~~~eAi~Ra~ay~eAGAD~ifv~~-------~~~~~~ei~~~~~~~~ 206 (285)
T TIGR02320 162 ---L-----ILG---KGMEDALKRAEAYAEAGADGIMIHS-------RKKDPDEILEFARRFR 206 (285)
T ss_pred ---c-----ccc---CCHHHHHHHHHHHHHcCCCEEEecC-------CCCCHHHHHHHHHHhh
Confidence 0 100 1378999999999999999999994 1234566777776664
No 54
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=94.98 E-value=0.2 Score=47.81 Aligned_cols=123 Identities=14% Similarity=0.328 Sum_probs=86.3
Q ss_pred CcccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc----
Q 026320 3 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE---- 77 (240)
Q Consensus 3 ~yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~---- 77 (240)
..|+-+=||+||-.+.+++.|++.++.++++. .+.+. .|+.+.-+|+.+ +++++.++++|++.|.|.-=|.+
T Consensus 61 ~~i~tiy~GGGTPs~l~~~~l~~ll~~i~~~~-~~~~~--~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L 137 (390)
T PRK06582 61 KYIKSIFFGGGTPSLMNPVIVEGIINKISNLA-IIDNQ--TEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDL 137 (390)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHHhC-CCCCC--CEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHH
Confidence 35788999999999999999999999999863 11111 244444466665 78999999999999988765552
Q ss_pred ------CChhHHHHHHHHHHHcCCcccceeee--ecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcC
Q 026320 78 ------IPEETLLRYVRLVKSAGLKAKPKFAV--MFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 149 (240)
Q Consensus 78 ------l~~~~r~~lI~~~~~~G~~v~~E~g~--k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAG 149 (240)
-+.++-.+.++.+++.+. .+.+ ..+. |. ++.+.+.+.++..++.+
T Consensus 138 ~~lgR~h~~~~~~~ai~~~~~~~~----~v~~DlI~Gl----------------Pg-------qt~e~~~~~l~~~~~l~ 190 (390)
T PRK06582 138 KKLGRTHDCMQAIKTIEAANTIFP----RVSFDLIYAR----------------SG-------QTLKDWQEELKQAMQLA 190 (390)
T ss_pred HHcCCCCCHHHHHHHHHHHHHhCC----cEEEEeecCC----------------CC-------CCHHHHHHHHHHHHhcC
Confidence 244555677888877522 2333 2211 11 25788899999999999
Q ss_pred CcEEEE
Q 026320 150 ADMIMI 155 (240)
Q Consensus 150 A~~Vii 155 (240)
.++|-+
T Consensus 191 p~his~ 196 (390)
T PRK06582 191 TSHISL 196 (390)
T ss_pred CCEEEE
Confidence 987744
No 55
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=94.90 E-value=0.61 Score=40.83 Aligned_cols=148 Identities=16% Similarity=0.133 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
.+++.++.++++||+.||+..-. ..+..++-+.+++.|+++... +. +..... ..++. ....|..- .
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~----~~~~~~l~~~l~~~gl~v~~~-~~--~~~~~~-~~~~~--~~~~~~~~----~ 80 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY----DWDAEALKARLAAAGLEQVLF-NL--PAGDWA-AGERG--IACLPGRE----E 80 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc----cCCHHHHHHHHHHcCCeEEEE-eC--CCCccc-cCCCc--cccCCccH----H
Confidence 79999999999999999996521 234667777888999997642 21 110000 00000 00000000 0
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeccccccCC--CCccH---HHHHHH---HhccCCCceEEec-----------CCchh
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHA--DSLRA---DIIAKV---IGRLGLEKTMFEA-----------TNPRT 193 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~--g~~r~---d~v~~i---~~~~~~~~lifEA-----------P~k~q 193 (240)
+..+.+-+.++..-+.||..|.+.+-....+. .+... +.+.++ ++..|+ ++.+|. +...+
T Consensus 81 ~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi-~l~lE~~~~~~~~~~~l~t~~~ 159 (254)
T TIGR03234 81 EFREGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGL-TLLIEPINSFDMPGFFLTTTEQ 159 (254)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC-EEEEEECCcccCCCChhcCHHH
Confidence 00122334444555779999887653221110 11111 223333 344443 377784 24566
Q ss_pred HHHHHHHhC-CCcccccCCCCch
Q 026320 194 SEWFIRRYG-PKVNLFVDHSQVM 215 (240)
Q Consensus 194 Q~~~I~~fG-~~VNLgI~~~dVl 215 (240)
-..+++..+ |||.+-.|+.+..
T Consensus 160 ~~~li~~v~~~~~~i~~D~~h~~ 182 (254)
T TIGR03234 160 ALAVIDDVGRENLKLQYDLYHMQ 182 (254)
T ss_pred HHHHHHHhCCCCEeEeeehhhhh
Confidence 678888888 6666656666654
No 56
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=94.81 E-value=0.66 Score=40.45 Aligned_cols=146 Identities=18% Similarity=0.208 Sum_probs=84.6
Q ss_pred chHHHHHHHHHHcCCCEEEecC-CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcc
Q 026320 52 SAFKEYVEDCKQVGFDTIELNV-GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 130 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISd-Gti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~ 130 (240)
..+++.++.|+++||+.||++. +....+.++..++-+.+++.|+++..--...+. -. ..+. .+
T Consensus 15 ~~l~~~l~~~~~~G~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~--~~--~~~~------------~~ 78 (274)
T COG1082 15 LPLEEILRKAAELGFDGVELSPGDLFPADYKELAELKELLADYGLEITSLAPFSNN--LL--SPDE------------EE 78 (274)
T ss_pred CCHHHHHHHHHHhCCCeEecCCcccCCchhhhHHHHHHHHHHcCcEEEeecccCCC--cC--CCch------------hh
Confidence 4789999999999999999998 444444444788888999999987653333221 01 0110 00
Q ss_pred cccCHHHHHHHHHHHHHcCCcEEEEecccc---cc---CCCCc--cHHHHH---HHHhccCCCceEEec---C-----Cc
Q 026320 131 YVEDVDLLIRRAERCLEAGADMIMIDSDDV---CK---HADSL--RADIIA---KVIGRLGLEKTMFEA---T-----NP 191 (240)
Q Consensus 131 ~~~~~~~~i~~~~~dLeAGA~~ViiEargi---~d---~~g~~--r~d~v~---~i~~~~~~~~lifEA---P-----~k 191 (240)
.....+.+.+.++-.-+.||.+|++..-.. .. ....+ -.+.+. .+++.. -=++-+|. | ..
T Consensus 79 ~~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~-~i~l~~e~~~~~~~~~~~~ 157 (274)
T COG1082 79 REEALEELKRAIELAKELGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEEL-GIGLALENHHHPGNVVETG 157 (274)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHh-CCceEEeecCCccceeecC
Confidence 011244555555556689999888776321 11 11111 122222 333333 33455664 3 33
Q ss_pred hhHHHHHHHhCCCcccc--cCCCCch
Q 026320 192 RTSEWFIRRYGPKVNLF--VDHSQVM 215 (240)
Q Consensus 192 ~qQ~~~I~~fG~~VNLg--I~~~dVl 215 (240)
.|...++...+.. |+| +|+.+..
T Consensus 158 ~~~~~~~~~~~~~-~v~~~lD~~H~~ 182 (274)
T COG1082 158 ADALDLLREVDSP-NVGLLLDTGHAF 182 (274)
T ss_pred HHHHHHHHhcCCC-ceEEEEecCchh
Confidence 5567888888876 665 6666544
No 57
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.34 Score=46.03 Aligned_cols=122 Identities=16% Similarity=0.159 Sum_probs=82.2
Q ss_pred cChhHHHHHHHHHHhCCceec-CC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCC
Q 026320 18 MPKPFIEEVVKRAHQHDVYVS-TG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 95 (240)
Q Consensus 18 ~p~~~l~eKi~l~~~~gV~v~-~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~ 95 (240)
++.+.|++-|+++|+||+++| +. +++--.-.. .+.+|++.+.++|-|+|+++| .-+|..+++.|-
T Consensus 46 fs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~---~~~~~l~~l~e~GvDaviv~D----------pg~i~l~~e~~p 112 (347)
T COG0826 46 FSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELE---TLERYLDRLVELGVDAVIVAD----------PGLIMLARERGP 112 (347)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeccccccchhh---HHHHHHHHHHHcCCCEEEEcC----------HHHHHHHHHhCC
Confidence 455669999999999999776 44 543222111 477999999999999999999 578999998762
Q ss_pred cccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHH
Q 026320 96 KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKV 175 (240)
Q Consensus 96 ~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i 175 (240)
..--.++.+.. ++ + .++++-.-+.|+. .+|=+| +++-+.+.+|
T Consensus 113 ~l~ih~S~q~~---------------v~----------N----~~~~~f~~~~G~~-rvVl~r-------Els~~ei~~i 155 (347)
T COG0826 113 DLPIHVSTQAN---------------VT----------N----AETAKFWKELGAK-RVVLPR-------ELSLEEIKEI 155 (347)
T ss_pred CCcEEEeeeEe---------------cC----------C----HHHHHHHHHcCCE-EEEeCc-------cCCHHHHHHH
Confidence 21111222110 01 1 4566777788954 455566 6678888889
Q ss_pred HhccC---CCceEEecC
Q 026320 176 IGRLG---LEKTMFEAT 189 (240)
Q Consensus 176 ~~~~~---~~~lifEAP 189 (240)
.++++ +|-+.+.|=
T Consensus 156 ~~~~~~veiEvfVhGal 172 (347)
T COG0826 156 KEQTPDVEIEVFVHGAL 172 (347)
T ss_pred HHhCCCceEEEEEecch
Confidence 87764 556666653
No 58
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=94.69 E-value=1.3 Score=37.73 Aligned_cols=87 Identities=17% Similarity=0.201 Sum_probs=53.2
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee-eeecCCCCCCCccccccccccccCCCCcccccCHH
Q 026320 58 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF-AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 136 (240)
Q Consensus 58 l~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~-g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~ 136 (240)
++.+.+.|.++|=+.--+ +...-.++++.++++|+++..++ +. .
T Consensus 69 ~~~~~~~Gad~i~vh~~~---~~~~~~~~i~~~~~~g~~~~~~~~~~--------------------------------~ 113 (206)
T TIGR03128 69 AEQAFAAGADIVTVLGVA---DDATIKGAVKAAKKHGKEVQVDLINV--------------------------------K 113 (206)
T ss_pred HHHHHHcCCCEEEEeccC---CHHHHHHHHHHHHHcCCEEEEEecCC--------------------------------C
Confidence 677888999999654322 33445789999999988776643 32 1
Q ss_pred HHHHHHHHHHHcCCcEEEEecccc-ccCCCCccHHHHHHHHhccC
Q 026320 137 LLIRRAERCLEAGADMIMIDSDDV-CKHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 137 ~~i~~~~~dLeAGA~~ViiEargi-~d~~g~~r~d~v~~i~~~~~ 180 (240)
...+.++...+.|+++|.+.. |. -..-+....+.+.++...++
T Consensus 114 t~~~~~~~~~~~g~d~v~~~p-g~~~~~~~~~~~~~i~~l~~~~~ 157 (206)
T TIGR03128 114 DKVKRAKELKELGADYIGVHT-GLDEQAKGQNPFEDLQTILKLVK 157 (206)
T ss_pred ChHHHHHHHHHcCCCEEEEcC-CcCcccCCCCCHHHHHHHHHhcC
Confidence 114555556788999998853 11 01122334555666665554
No 59
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=94.57 E-value=0.98 Score=40.96 Aligned_cols=158 Identities=16% Similarity=0.216 Sum_probs=105.0
Q ss_pred ccEEEecCccc---------cccChhHHHHHHHHHH-hCCceec--CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 026320 5 VDGLKFSGGSH---------SLMPKPFIEEVVKRAH-QHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 72 (240)
Q Consensus 5 ID~lKfg~GTs---------~l~p~~~l~eKi~l~~-~~gV~v~--~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 72 (240)
||++=+||.+. ...+.+.+++-..+.+ +.-+... ++. ...+.++.+.+.|++.|-|+
T Consensus 34 Vd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----------~~~~~l~~a~~~gv~~iri~ 102 (266)
T cd07944 34 IDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGN-----------DDIDLLEPASGSVVDMIRVA 102 (266)
T ss_pred CCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCC-----------CCHHHHHHHhcCCcCEEEEe
Confidence 67777887654 2345666777666653 3222221 121 23567888899999999998
Q ss_pred CCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcE
Q 026320 73 VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 152 (240)
Q Consensus 73 dGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ 152 (240)
...-.+ +.-.+.|+.++++|++|. ++..+... .+++.+++.+++..++||+.
T Consensus 103 ~~~~~~--~~~~~~i~~ak~~G~~v~--~~~~~a~~------------------------~~~~~~~~~~~~~~~~g~~~ 154 (266)
T cd07944 103 FHKHEF--DEALPLIKAIKEKGYEVF--FNLMAISG------------------------YSDEELLELLELVNEIKPDV 154 (266)
T ss_pred cccccH--HHHHHHHHHHHHCCCeEE--EEEEeecC------------------------CCHHHHHHHHHHHHhCCCCE
Confidence 765543 445679999999998654 56643110 15789999999999999998
Q ss_pred EEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCchhHHHHHHHhCCCcccc-cCCCC-----chhhhhhhCcc
Q 026320 153 IMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQ-----VMDLECLRGRN 224 (240)
Q Consensus 153 ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifEAP~k~qQ~~~I~~fG~~VNLg-I~~~d-----Vl~LE~LR~~~ 224 (240)
|. +.|..|...+..+.+++..+- +++++++.++ =.|++ .-+|++++.|.
T Consensus 155 i~-----l~DT~G~~~P~~v~~lv~~l~------------------~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa 209 (266)
T cd07944 155 FY-----IVDSFGSMYPEDIKRIISLLR------------------SNLDKDIKLGFHAHNNLQLALANTLEAIELGV 209 (266)
T ss_pred EE-----EecCCCCCCHHHHHHHHHHHH------------------HhcCCCceEEEEeCCCccHHHHHHHHHHHcCC
Confidence 74 688999999999999887432 3555566666 33333 23566666553
No 60
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=94.55 E-value=0.2 Score=45.90 Aligned_cols=86 Identities=19% Similarity=0.283 Sum_probs=61.4
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccC
Q 026320 55 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 134 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 134 (240)
..-.+..++.|.++|-|-|| ++..+.|+.+.++|..|.-.+|..-. + +..++.+....+- .+.
T Consensus 97 ~~a~r~~~~aGa~aVkiEdg------~~~~~~I~al~~agIpV~gHiGL~pq-~------~~~~gg~~i~grt----~~~ 159 (264)
T PRK00311 97 RNAGRLMKEAGAHAVKLEGG------EEVAETIKRLVERGIPVMGHLGLTPQ-S------VNVLGGYKVQGRD----EEA 159 (264)
T ss_pred HHHHHHHHHhCCeEEEEcCc------HHHHHHHHHHHHCCCCEeeeecccce-e------ecccCCeeeecCC----HHH
Confidence 33456677899999999998 46778999999999999888888422 1 1111111110000 012
Q ss_pred HHHHHHHHHHHHHcCCcEEEEec
Q 026320 135 VDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 135 ~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
.++++++++...+|||+.|.+|+
T Consensus 160 a~~~i~ra~a~~eAGA~~i~lE~ 182 (264)
T PRK00311 160 AEKLLEDAKALEEAGAFALVLEC 182 (264)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcC
Confidence 57999999999999999999998
No 61
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=94.48 E-value=1.7 Score=39.27 Aligned_cols=146 Identities=16% Similarity=0.201 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 128 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdG---ti~l~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 128 (240)
.++++++++-+-|.+.+=+.-. +..|+.++|.++++.+.+. +=++.-=+|+-
T Consensus 23 ~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~------------------------ 78 (289)
T PF00701_consen 23 ALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG------------------------ 78 (289)
T ss_dssp HHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE------------------------
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc------------------------
Confidence 6888999999999999988654 4689999999999998873 11111111221
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccCC----CCccHHHHHHHHhcc
Q 026320 129 TEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHA----DSLRADIIAKVIGRL 179 (240)
Q Consensus 129 ~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~~----g~~r~d~v~~i~~~~ 179 (240)
..+.++.++.++..-++||+-|++=.- -+|+.- -++..+.+.++.+ +
T Consensus 79 ---~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~-~ 154 (289)
T PF00701_consen 79 ---ANSTEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLAK-I 154 (289)
T ss_dssp ---SSSHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHT-S
T ss_pred ---chhHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhc-C
Confidence 114688899999999999999998752 246653 4777888888877 5
Q ss_pred C-CCceEEecCCchhHHHHHHHhCCCcccccCCCCchhhhhhhCccCCC
Q 026320 180 G-LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGK 227 (240)
Q Consensus 180 ~-~~~lifEAP~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G~ 227 (240)
+ +-=+=-...+..+...++++.++++.+... .|-.-+.+|..|.-|-
T Consensus 155 ~nv~giK~s~~~~~~~~~~~~~~~~~~~v~~G-~d~~~~~~l~~G~~G~ 202 (289)
T PF00701_consen 155 PNVVGIKDSSGDLERLIQLLRAVGPDFSVFCG-DDELLLPALAAGADGF 202 (289)
T ss_dssp TTEEEEEESSSBHHHHHHHHHHSSTTSEEEES-SGGGHHHHHHTTSSEE
T ss_pred CcEEEEEcCchhHHHHHHHhhhcccCeeeecc-ccccccccccccCCEE
Confidence 5 322233445555677788888999888665 4444578888776554
No 62
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=94.43 E-value=1.3 Score=38.53 Aligned_cols=129 Identities=15% Similarity=0.171 Sum_probs=79.0
Q ss_pred cccChhHHHHHHHHHHhCCceec-CCcH--HHHHHH-----------hC-Cc------hHHHHHHHHHHcCCCEEEecCC
Q 026320 16 SLMPKPFIEEVVKRAHQHDVYVS-TGDW--AEHLIR-----------NG-PS------AFKEYVEDCKQVGFDTIELNVG 74 (240)
Q Consensus 16 ~l~p~~~l~eKi~l~~~~gV~v~-~Gtl--~E~a~~-----------qg-~~------~~~~yl~~~k~lGF~~IEISdG 74 (240)
.+...+...+....+.++|+... .+++ ++.+-. ++ .+ ...++++.|++.|-+.|-+.-.
T Consensus 18 ~~~~~~~~~~~a~a~~~~G~~~~~~~~~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~ 97 (221)
T PRK01130 18 PLHSPEIMAAMALAAVQGGAVGIRANGVEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDAT 97 (221)
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCC
Confidence 35555667788888888888433 3443 222211 00 00 1256789999999999988654
Q ss_pred cccCCh-hHHHHHHHHHHH-cCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcE
Q 026320 75 SLEIPE-ETLLRYVRLVKS-AGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 152 (240)
Q Consensus 75 ti~l~~-~~r~~lI~~~~~-~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ 152 (240)
...-|. ++..++++.+++ .|+.+.+++. + .+++++..++|+++
T Consensus 98 ~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~-------------------------------t----~ee~~~a~~~G~d~ 142 (221)
T PRK01130 98 LRPRPDGETLAELVKRIKEYPGQLLMADCS-------------------------------T----LEEGLAAQKLGFDF 142 (221)
T ss_pred CCCCCCCCCHHHHHHHHHhCCCCeEEEeCC-------------------------------C----HHHHHHHHHcCCCE
Confidence 443232 566789999998 6666543221 1 23456778999999
Q ss_pred EEEeccccccCC---CCccHHHHHHHHhcc
Q 026320 153 IMIDSDDVCKHA---DSLRADIIAKVIGRL 179 (240)
Q Consensus 153 ViiEargi~d~~---g~~r~d~v~~i~~~~ 179 (240)
|.+..+|..... .....+.+.++.+.+
T Consensus 143 i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~ 172 (221)
T PRK01130 143 IGTTLSGYTEETKKPEEPDFALLKELLKAV 172 (221)
T ss_pred EEcCCceeecCCCCCCCcCHHHHHHHHHhC
Confidence 998877664321 222356666666554
No 63
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=94.36 E-value=0.34 Score=47.89 Aligned_cols=127 Identities=15% Similarity=0.252 Sum_probs=90.0
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHh-CCc-hHHHHHHHHHHcCCCEEEecCCccc----
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRN-GPS-AFKEYVEDCKQVGFDTIELNVGSLE---- 77 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~q-g~~-~~~~yl~~~k~lGF~~IEISdGti~---- 77 (240)
-|+.+=||+||..+.+.+.+.+-++.++++-..+. ..-|+.+.. .|+ --++.++.+++.|++.|.|+--|.+
T Consensus 218 ~v~tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~--~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vL 295 (488)
T PRK08207 218 KITTIYFGGGTPTSLTAEELERLLEEIYENFPDVK--NVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETL 295 (488)
T ss_pred ceeEEEEeCCCccCCCHHHHHHHHHHHHHhccccC--CceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHH
Confidence 47788999999999999999999999887521111 111333322 122 2468899999999999999877764
Q ss_pred ------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCC
Q 026320 78 ------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 150 (240)
Q Consensus 78 ------l~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA 150 (240)
-+.++-.+.++.+++.||. +-..+ -.+. | -++.+++.+.++..++.+.
T Consensus 296 k~igR~ht~e~v~~ai~~ar~~Gf~~In~DL--I~GL----------------P-------gEt~ed~~~tl~~l~~L~p 350 (488)
T PRK08207 296 KAIGRHHTVEDIIEKFHLAREMGFDNINMDL--IIGL----------------P-------GEGLEEVKHTLEEIEKLNP 350 (488)
T ss_pred HHhCCCCCHHHHHHHHHHHHhCCCCeEEEEE--EeCC----------------C-------CCCHHHHHHHHHHHHhcCc
Confidence 5778888999999999994 32222 2221 1 1257888999999999999
Q ss_pred cEEEEec
Q 026320 151 DMIMIDS 157 (240)
Q Consensus 151 ~~ViiEa 157 (240)
+.|-+=.
T Consensus 351 d~isv~~ 357 (488)
T PRK08207 351 ESLTVHT 357 (488)
T ss_pred CEEEEEe
Confidence 9876644
No 64
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=94.22 E-value=0.27 Score=44.78 Aligned_cols=86 Identities=21% Similarity=0.316 Sum_probs=62.0
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccC
Q 026320 55 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 134 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 134 (240)
..-.+..++.|.++|-|-|| ++..+.|+.+.++|..|..++|..-. + +..++.+....+- .+.
T Consensus 94 ~~a~r~~~~aGa~aVkiEd~------~~~~~~I~al~~agipV~gHiGL~pq-~------~~~~gg~~~~grt----~~~ 156 (254)
T cd06557 94 RNAARLMKEAGADAVKLEGG------AEVAETIRALVDAGIPVMGHIGLTPQ-S------VNQLGGYKVQGKT----EEE 156 (254)
T ss_pred HHHHHHHHHhCCeEEEEcCc------HHHHHHHHHHHHcCCCeeccccccce-e------eeccCCceeccCC----HHH
Confidence 33456678899999999998 47889999999999999989888421 1 1111111110000 012
Q ss_pred HHHHHHHHHHHHHcCCcEEEEec
Q 026320 135 VDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 135 ~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
.+++++++++..+|||+.|.+|+
T Consensus 157 a~~~i~ra~a~~~AGA~~i~lE~ 179 (254)
T cd06557 157 AERLLEDALALEEAGAFALVLEC 179 (254)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcC
Confidence 58999999999999999999998
No 65
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=94.11 E-value=0.42 Score=46.88 Aligned_cols=96 Identities=22% Similarity=0.336 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
-++++++.+.+.|++.|-|.+..-++.+ ....|+.+++.|+.| ++.+-. +.+ |.
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~~n--~~~~v~~ak~~G~~v--~~~i~~---t~~------------p~------- 150 (448)
T PRK12331 97 VVESFVQKSVENGIDIIRIFDALNDVRN--LETAVKATKKAGGHA--QVAISY---TTS------------PV------- 150 (448)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcHHH--HHHHHHHHHHcCCeE--EEEEEe---ecC------------CC-------
Confidence 4788999999999999999998777753 567899999999876 444421 111 10
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
-+++.+++.+++..++||+.|- |.|..|-..+..+.++++.+
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~I~-----i~Dt~G~l~P~~v~~lv~al 192 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADSIC-----IKDMAGILTPYVAYELVKRI 192 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEE-----EcCCCCCCCHHHHHHHHHHH
Confidence 1578899999999999999764 57888888888887777654
No 66
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=94.09 E-value=1.3 Score=40.06 Aligned_cols=111 Identities=18% Similarity=0.213 Sum_probs=85.4
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHH
Q 026320 58 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 137 (240)
Q Consensus 58 l~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 137 (240)
++.++..|-|+|=+-... ++.++..++++.+++.|+.+.-|+.-
T Consensus 126 i~~a~~~GAD~VlLi~~~--l~~~~l~~li~~a~~lGl~~lvevh~---------------------------------- 169 (260)
T PRK00278 126 IYEARAAGADAILLIVAA--LDDEQLKELLDYAHSLGLDVLVEVHD---------------------------------- 169 (260)
T ss_pred HHHHHHcCCCEEEEEecc--CCHHHHHHHHHHHHHcCCeEEEEeCC----------------------------------
Confidence 778999999999998777 46788899999999999888887755
Q ss_pred HHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCC-ceEEecCC-chhHHHHHHHhCCCccc
Q 026320 138 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE-KTMFEATN-PRTSEWFIRRYGPKVNL 207 (240)
Q Consensus 138 ~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~-~lifEAP~-k~qQ~~~I~~fG~~VNL 207 (240)
.+++++.+++||+.|-+=.|.+-. -....+...+++..++-+ .+|-|+=- ...+...+...|.+.=|
T Consensus 170 -~~E~~~A~~~gadiIgin~rdl~~--~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vl 238 (260)
T PRK00278 170 -EEELERALKLGAPLIGINNRNLKT--FEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVL 238 (260)
T ss_pred -HHHHHHHHHcCCCEEEECCCCccc--ccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEE
Confidence 234456779999999986664421 234477788888877644 67888875 47778888888988766
No 67
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=93.90 E-value=1.2 Score=41.62 Aligned_cols=135 Identities=11% Similarity=0.117 Sum_probs=77.9
Q ss_pred HHHHHHHHHHcCCCEEE-ecCCcc-----------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 026320 54 FKEYVEDCKQVGFDTIE-LNVGSL-----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 121 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IE-ISdGti-----------~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~ 121 (240)
.++.++..|+.|++.+- .+.-+. .++.++|.+.|+.+++.|+++-+ |...+..|
T Consensus 140 ~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s--~~i~G~~E------------ 205 (343)
T TIGR03551 140 VEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTA--TIMYGHVE------------ 205 (343)
T ss_pred HHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccc--eEEEecCC------------
Confidence 58899999999999874 222222 25788999999999999998866 44333211
Q ss_pred cccCCCCcccccCHHHHHHHHHHHHHcCCcE------EE----EeccccccCC---CCccHHHHHHHH--hccCCCc--e
Q 026320 122 VARAPRSTEYVEDVDLLIRRAERCLEAGADM------IM----IDSDDVCKHA---DSLRADIIAKVI--GRLGLEK--T 184 (240)
Q Consensus 122 ~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~------Vi----iEargi~d~~---g~~r~d~v~~i~--~~~~~~~--l 184 (240)
+.+++++.+..--+.+.++ |- .++-.+++.. ..+..+..-+++ .++=+.+ +
T Consensus 206 ------------t~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~~~~ 273 (343)
T TIGR03551 206 ------------TPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKVHAIARILLHGLID 273 (343)
T ss_pred ------------CHHHHHHHHHHHHHhhHHhCCeeEEEeccccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCCCccc
Confidence 3456666665555555443 21 2344566431 223343333333 4444333 2
Q ss_pred EEecCC----chhHHHHHHHhCCCcccc-cCCCCch
Q 026320 185 MFEATN----PRTSEWFIRRYGPKVNLF-VDHSQVM 215 (240)
Q Consensus 185 ifEAP~----k~qQ~~~I~~fG~~VNLg-I~~~dVl 215 (240)
-.-|+. +. +..+...+|.|.==| +-+++|.
T Consensus 274 ~i~a~~~~l~~~-~~~~~l~~Gan~~~g~~~~e~v~ 308 (343)
T TIGR03551 274 NIQASWVKLGKK-LAQVALRCGANDLGGTLMEESIS 308 (343)
T ss_pred CeeccccccCHH-HHHHHHhCCCccCCccceecccc
Confidence 466663 33 334556778776445 5555554
No 68
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=93.89 E-value=0.43 Score=47.59 Aligned_cols=141 Identities=14% Similarity=0.076 Sum_probs=98.1
Q ss_pred ccEEEecCccccccChh-----------HHHHHHHHHHhCCceecCCc-HHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 026320 5 VDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVSTGD-WAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 72 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~-----------~l~eKi~l~~~~gV~v~~Gt-l~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 72 (240)
+|.+-+...||-++-+. .+++-++.++++|..+..+. ++.-+.+..++.+-++.+.+.+.|.+.|-+.
T Consensus 99 ~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~ 178 (524)
T PRK12344 99 TPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWVVLC 178 (524)
T ss_pred CCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHhCCCCeEEEc
Confidence 34555555555443322 35578899999999887653 3322334455567788888899999999999
Q ss_pred CCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcE
Q 026320 73 VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 152 (240)
Q Consensus 73 dGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ 152 (240)
|-.--+.+.+-.++|+.++++ +. ..+++.+ .. |...-+-.....++|||+.
T Consensus 179 DTvG~~~P~~v~~li~~l~~~-~~--v~i~~H~-HN-------------------------D~GlA~ANslaAi~aGa~~ 229 (524)
T PRK12344 179 DTNGGTLPHEVAEIVAEVRAA-PG--VPLGIHA-HN-------------------------DSGCAVANSLAAVEAGARQ 229 (524)
T ss_pred cCCCCcCHHHHHHHHHHHHHh-cC--CeEEEEE-CC-------------------------CCChHHHHHHHHHHhCCCE
Confidence 999999999999999999885 22 2344432 11 2334466777789999996
Q ss_pred EEEecc--ccccCCCCccHHHHHHHH
Q 026320 153 IMIDSD--DVCKHADSLRADIIAKVI 176 (240)
Q Consensus 153 ViiEar--gi~d~~g~~r~d~v~~i~ 176 (240)
||+- |+=+..||...+.+-..+
T Consensus 230 --Vd~Tl~GlGERaGNa~lE~lv~~L 253 (524)
T PRK12344 230 --VQGTINGYGERCGNANLCSIIPNL 253 (524)
T ss_pred --EEEecccccccccCcCHHHHHHHH
Confidence 5665 888888988877665333
No 69
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=93.85 E-value=0.49 Score=45.92 Aligned_cols=124 Identities=11% Similarity=0.152 Sum_probs=84.5
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc-----
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL----- 76 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti----- 76 (240)
-|+-+=||+||..+.+.+.|++-++.++++ ++. + -.|+.+.-+|+. -++.++.+++.||+.|.|---|.
T Consensus 114 ~i~~iy~GGGTPs~L~~~~l~~ll~~i~~~~~l~--~--~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vL 189 (449)
T PRK09058 114 PIHAVYFGGGTPTALSAEDLARLITALREYLPLA--P--DCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVR 189 (449)
T ss_pred eeeEEEECCCccccCCHHHHHHHHHHHHHhCCCC--C--CCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHH
Confidence 478889999999999999999999999885 221 1 122222222322 36889999999999987755443
Q ss_pred -----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCc
Q 026320 77 -----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 151 (240)
Q Consensus 77 -----~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~ 151 (240)
.-+.++-.+.|+.+++.||.... +..-.+. |. +|.+.+.+.++..++.|.+
T Consensus 190 k~lgR~~~~~~~~~~i~~l~~~g~~~v~-~DlI~Gl----------------Pg-------qT~e~~~~~l~~~~~l~~~ 245 (449)
T PRK09058 190 RRAGRKDDREEVLARLEELVARDRAAVV-CDLIFGL----------------PG-------QTPEIWQQDLAIVRDLGLD 245 (449)
T ss_pred HHhCCCCCHHHHHHHHHHHHhCCCCcEE-EEEEeeC----------------CC-------CCHHHHHHHHHHHHhcCCC
Confidence 23445556778888888865322 2222221 11 2578889999999999999
Q ss_pred EEEE
Q 026320 152 MIMI 155 (240)
Q Consensus 152 ~Vii 155 (240)
.|-+
T Consensus 246 ~is~ 249 (449)
T PRK09058 246 GVDL 249 (449)
T ss_pred EEEE
Confidence 7754
No 70
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=93.82 E-value=0.52 Score=47.79 Aligned_cols=96 Identities=16% Similarity=0.224 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
.++.+++.+.+.|.+.|-|.|..-+++ .-...|+.+++.|+.+..-+.... + +.
T Consensus 98 vv~~~v~~a~~~Gid~~rifd~lnd~~--~~~~ai~~ak~~G~~~~~~i~yt~--~---p~------------------- 151 (593)
T PRK14040 98 VVERFVERAVKNGMDVFRVFDAMNDPR--NLETALKAVRKVGAHAQGTLSYTT--S---PV------------------- 151 (593)
T ss_pred HHHHHHHHHHhcCCCEEEEeeeCCcHH--HHHHHHHHHHHcCCeEEEEEEEee--C---Cc-------------------
Confidence 688999999999999999999777763 455689999999997654443311 0 01
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
.+++.+.+.++.-.++||+.|- |+|..|-..+..+.++++.+
T Consensus 152 ~~~~~~~~~a~~l~~~Gad~i~-----i~Dt~G~l~P~~~~~lv~~l 193 (593)
T PRK14040 152 HTLQTWVDLAKQLEDMGVDSLC-----IKDMAGLLKPYAAYELVSRI 193 (593)
T ss_pred cCHHHHHHHHHHHHHcCCCEEE-----ECCCCCCcCHHHHHHHHHHH
Confidence 1478889999999999999764 68999999999998888755
No 71
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=93.80 E-value=0.88 Score=42.17 Aligned_cols=111 Identities=18% Similarity=0.253 Sum_probs=71.9
Q ss_pred EEEecCccccccChhHHHHHHHHHHhCCce--ecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec-CCcccCC---
Q 026320 7 GLKFSGGSHSLMPKPFIEEVVKRAHQHDVY--VST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN-VGSLEIP--- 79 (240)
Q Consensus 7 ~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~--v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS-dGti~l~--- 79 (240)
.+-|.+|=-.+.| .+.+.++.+++.|+. +.| |++++- .+ +..+..|...|-|| ||.-+.-
T Consensus 75 ~V~i~GGEPLL~p--dl~eiv~~~~~~g~~v~l~TNG~ll~~-------~~----~~l~~~~~~~i~VSLDG~~e~hd~~ 141 (318)
T TIGR03470 75 VVSIPGGEPLLHP--EIDEIVRGLVARKKFVYLCTNALLLEK-------KL----DKFEPSPYLTFSVHLDGLREHHDAS 141 (318)
T ss_pred EEEEeCccccccc--cHHHHHHHHHHcCCeEEEecCceehHH-------HH----HHHHhCCCcEEEEEEecCchhhchh
Confidence 4567778777776 589999999998864 446 776542 22 23356788888888 6643221
Q ss_pred ------hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEE
Q 026320 80 ------EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 153 (240)
Q Consensus 80 ------~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~V 153 (240)
.+.-.+.|+.++++|+.|..-+.+-. . .+++++.+.++..-+.|++.|
T Consensus 142 ~~~~g~f~~~l~~I~~l~~~G~~v~v~~tv~~-------~-------------------~n~~ei~~~~~~~~~lGv~~i 195 (318)
T TIGR03470 142 VCREGVFDRAVEAIREAKARGFRVTTNTTLFN-------D-------------------TDPEEVAEFFDYLTDLGVDGM 195 (318)
T ss_pred hcCCCcHHHHHHHHHHHHHCCCcEEEEEEEeC-------C-------------------CCHHHHHHHHHHHHHcCCCEE
Confidence 23335789999999987665554411 0 124555555555567899888
Q ss_pred EEe
Q 026320 154 MID 156 (240)
Q Consensus 154 iiE 156 (240)
.+-
T Consensus 196 ~i~ 198 (318)
T TIGR03470 196 TIS 198 (318)
T ss_pred EEe
Confidence 773
No 72
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=93.77 E-value=0.4 Score=42.76 Aligned_cols=107 Identities=18% Similarity=0.192 Sum_probs=73.5
Q ss_pred EEecCccccccChhHHHHHHHHHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHH
Q 026320 8 LKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLL 84 (240)
Q Consensus 8 lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~ 84 (240)
.|-|.|...+.+++.+.+.++-.++.+++++- .+|- . ...+..+.+.+.|.++|-++.+.-.. ..+ .
T Consensus 113 ~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~~------~--~~~~la~~l~~aG~d~ihv~~~~~g~-~ad-~ 182 (233)
T cd02911 113 VEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGVD------V--DDEELARLIEKAGADIIHVDAMDPGN-HAD-L 182 (233)
T ss_pred hcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCcC------c--CHHHHHHHHHHhCCCEEEECcCCCCC-CCc-H
Confidence 46688999999999999999999998887763 2331 1 45667788899999999998765432 222 3
Q ss_pred HHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccc
Q 026320 85 RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD 159 (240)
Q Consensus 85 ~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarg 159 (240)
++|+.++ .. +|=++. + .+ .| .+.+++.++.|||.||+ ||+
T Consensus 183 ~~I~~i~-~~---ipVIgn---G-gI----------------------~s----~eda~~~l~~GaD~Vmi-GR~ 222 (233)
T cd02911 183 KKIRDIS-TE---LFIIGN---N-SV----------------------TT----IESAKEMFSYGADMVSV-ARA 222 (233)
T ss_pred HHHHHhc-CC---CEEEEE---C-Cc----------------------CC----HHHHHHHHHcCCCEEEE-cCC
Confidence 6777765 11 333333 1 11 12 46667777889999998 554
No 73
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=93.76 E-value=0.37 Score=42.00 Aligned_cols=93 Identities=24% Similarity=0.343 Sum_probs=67.6
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccC--------C----hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSLEI--------P----EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 121 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti~l--------~----~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~ 121 (240)
++.-++.+++.|.+.|.+....-++ + .+.-.++++.+++.|++| .|+..+..
T Consensus 69 i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v--~~~~~~~~-------------- 132 (237)
T PF00682_consen 69 IERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV--AFGCEDAS-------------- 132 (237)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE--EEEETTTG--------------
T ss_pred HHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce--EeCccccc--------------
Confidence 5555777888999999998655441 1 234457899999999998 56653210
Q ss_pred cccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHh
Q 026320 122 VARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 177 (240)
Q Consensus 122 ~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~ 177 (240)
..+++.+.+.+++..++|++.| .|.|..|...++.+.++++
T Consensus 133 ----------~~~~~~~~~~~~~~~~~g~~~i-----~l~Dt~G~~~P~~v~~lv~ 173 (237)
T PF00682_consen 133 ----------RTDPEELLELAEALAEAGADII-----YLADTVGIMTPEDVAELVR 173 (237)
T ss_dssp ----------GSSHHHHHHHHHHHHHHT-SEE-----EEEETTS-S-HHHHHHHHH
T ss_pred ----------cccHHHHHHHHHHHHHcCCeEE-----EeeCccCCcCHHHHHHHHH
Confidence 1158999999999999999988 4788899999998888876
No 74
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=93.70 E-value=1.9 Score=39.95 Aligned_cols=115 Identities=18% Similarity=0.341 Sum_probs=76.4
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCC-c---eecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc--
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-V---YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-- 77 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~g-V---~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~-- 77 (240)
+..+.|.+|.-.+.+ .+.+-++.+++++ + .+.| |+++ .++.+.+++.|++.|-||=.+++
T Consensus 62 v~~I~~tGGEPllr~--dl~~li~~i~~~~~l~~i~itTNG~ll-----------~~~~~~L~~aGl~~v~ISlDs~~~e 128 (329)
T PRK13361 62 VRKIRLTGGEPLVRR--GCDQLVARLGKLPGLEELSLTTNGSRL-----------ARFAAELADAGLKRLNISLDTLRPE 128 (329)
T ss_pred CCEEEEECcCCCccc--cHHHHHHHHHhCCCCceEEEEeChhHH-----------HHHHHHHHHcCCCeEEEEeccCCHH
Confidence 566888888877765 5778888887764 2 2334 5443 34567778899999999977763
Q ss_pred --------CChhHHHHHHHHHHHcCC-cccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHc
Q 026320 78 --------IPEETLLRYVRLVKSAGL-KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA 148 (240)
Q Consensus 78 --------l~~~~r~~lI~~~~~~G~-~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeA 148 (240)
-+.+.-.+.|+.+++.|+ .++-.+-+..+ .+.+++.+.++-..+.
T Consensus 129 ~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g--------------------------~N~~ei~~~~~~~~~~ 182 (329)
T PRK13361 129 LFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRG--------------------------QNDDEVLDLVEFCRER 182 (329)
T ss_pred HhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECC--------------------------CCHHHHHHHHHHHHhc
Confidence 234566788888888887 44433332110 0235556666666688
Q ss_pred CCcEEEEecc
Q 026320 149 GADMIMIDSD 158 (240)
Q Consensus 149 GA~~ViiEar 158 (240)
|+++..+|--
T Consensus 183 gi~~~~ie~m 192 (329)
T PRK13361 183 GLDIAFIEEM 192 (329)
T ss_pred CCeEEEEecc
Confidence 9999999865
No 75
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=93.66 E-value=2.5 Score=34.28 Aligned_cols=119 Identities=22% Similarity=0.276 Sum_probs=79.1
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCC-----ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-----VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL--- 76 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~g-----V~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti--- 76 (240)
++.+-|+.|+..+.+.+.+.+.++.++++. ..+...| .+...-++.++.+++.|++.|-+|=-+.
T Consensus 52 ~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t-------n~~~~~~~~~~~l~~~~~~~i~isl~~~~~~ 124 (216)
T smart00729 52 VGTVFIGGGTPTLLSPEQLEELLEAIREILGLADDVEITIET-------RPGTLTEELLEALKEAGVNRVSLGVQSGSDE 124 (216)
T ss_pred eeEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEe-------CcccCCHHHHHHHHHcCCCeEEEecccCCHH
Confidence 578889999999998776888888888774 2222211 1111236788899999999888876653
Q ss_pred -------cCChhHHHHHHHHHHHcC-CcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHc
Q 026320 77 -------EIPEETLLRYVRLVKSAG-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA 148 (240)
Q Consensus 77 -------~l~~~~r~~lI~~~~~~G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeA 148 (240)
.-+.+.+.+.|+.+++.| +.+..-+-+ +. .. ++.+++.+.++...+.
T Consensus 125 ~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~~--g~-----~~------------------~~~~~~~~~~~~~~~~ 179 (216)
T smart00729 125 VLKAINRGHTVEDVLEAVEKLREAGPIKVSTDLIV--GL-----PG------------------ETEEDFEETLKLLKEL 179 (216)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhCCcceEEeEEe--cC-----CC------------------CCHHHHHHHHHHHHHc
Confidence 345688889999999999 444332222 11 00 1346666666666788
Q ss_pred CCcEEEE
Q 026320 149 GADMIMI 155 (240)
Q Consensus 149 GA~~Vii 155 (240)
|++.|.+
T Consensus 180 ~~~~i~~ 186 (216)
T smart00729 180 GPDRVSI 186 (216)
T ss_pred CCCeEEe
Confidence 9986554
No 76
>PRK07094 biotin synthase; Provisional
Probab=93.57 E-value=2.2 Score=39.07 Aligned_cols=114 Identities=19% Similarity=0.228 Sum_probs=73.5
Q ss_pred cEEEecCccccccChhHHHHHHHHHHh-CCceec--CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc------
Q 026320 6 DGLKFSGGSHSLMPKPFIEEVVKRAHQ-HDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL------ 76 (240)
Q Consensus 6 D~lKfg~GTs~l~p~~~l~eKi~l~~~-~gV~v~--~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti------ 76 (240)
..+-|..|+...++.+.+.+-++..++ .++.+. +|. .-++.++..++.|++.|-++=-|.
T Consensus 88 ~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~l~i~~~~g~-----------~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~ 156 (323)
T PRK07094 88 RTIVLQSGEDPYYTDEKIADIIKEIKKELDVAITLSLGE-----------RSYEEYKAWKEAGADRYLLRHETADKELYA 156 (323)
T ss_pred CEEEEecCCCCCCCHHHHHHHHHHHHccCCceEEEecCC-----------CCHHHHHHHHHcCCCEEEeccccCCHHHHH
Confidence 344455555444555566666666666 355432 221 236788889999999887654443
Q ss_pred ----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcE
Q 026320 77 ----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 152 (240)
Q Consensus 77 ----~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ 152 (240)
..+.+++.+.|+.+++.|+.+.+-+=+ +. ++ ++.+++.+.++...+.+++.
T Consensus 157 ~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~ii--Gl----pg-------------------et~ed~~~~l~~l~~l~~~~ 211 (323)
T PRK07094 157 KLHPGMSFENRIACLKDLKELGYEVGSGFMV--GL----PG-------------------QTLEDLADDILFLKELDLDM 211 (323)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCeecceEEE--EC----CC-------------------CCHHHHHHHHHHHHhCCCCe
Confidence 467889999999999999876654333 21 01 13577777777777888887
Q ss_pred EEE
Q 026320 153 IMI 155 (240)
Q Consensus 153 Vii 155 (240)
+-+
T Consensus 212 v~~ 214 (323)
T PRK07094 212 IGI 214 (323)
T ss_pred eee
Confidence 655
No 77
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=93.55 E-value=0.44 Score=44.96 Aligned_cols=99 Identities=10% Similarity=0.084 Sum_probs=70.0
Q ss_pred cccccChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHH
Q 026320 14 SHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKS 92 (240)
Q Consensus 14 Ts~l~p~~~l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~ 92 (240)
....++++.|++.|+-+++. .=.++.=+++ .+ ..+..+++.++.|.+.+...|-++-|. |. . ++++++
T Consensus 33 a~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~--~~-~~~~~~~~~l~vi~e~~v~~V~~~~G~---P~----~-~~~lk~ 101 (320)
T cd04743 33 ALALMRGEQVKALLEETAELLGDKPWGVGIL--GF-VDTELRAAQLAVVRAIKPTFALIAGGR---PD----Q-ARALEA 101 (320)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCCeEEEEe--cc-CCCcchHHHHHHHHhcCCcEEEEcCCC---hH----H-HHHHHH
Confidence 34567888999999999884 3333321220 00 111247899999999999999998663 32 1 588999
Q ss_pred cCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 93 AGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 93 ~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
.|.+|++.++- ++.+++.+++|||.||+|+.
T Consensus 102 ~Gi~v~~~v~s-----------------------------------~~~A~~a~~~GaD~vVaqG~ 132 (320)
T cd04743 102 IGISTYLHVPS-----------------------------------PGLLKQFLENGARKFIFEGR 132 (320)
T ss_pred CCCEEEEEeCC-----------------------------------HHHHHHHHHcCCCEEEEecC
Confidence 98888754322 56678889999999999997
No 78
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=93.51 E-value=2.3 Score=39.00 Aligned_cols=77 Identities=19% Similarity=0.113 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 126 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 126 (240)
.++++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. | ..|. .|+ +
T Consensus 22 ~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi--~gv-------~--------------- 77 (294)
T TIGR02313 22 ALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFA--PGT-------G--------------- 77 (294)
T ss_pred HHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEE--EEC-------C---------------
Confidence 67888999999999999876554 489999999999988772 1 1111 122 0
Q ss_pred CCcccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 127 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
..+..+.++.++..-++||+.|++-.-
T Consensus 78 -----~~~t~~ai~~a~~A~~~Gad~v~v~pP 104 (294)
T TIGR02313 78 -----ALNHDETLELTKFAEEAGADAAMVIVP 104 (294)
T ss_pred -----cchHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 114678899999999999999999885
No 79
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=93.49 E-value=0.65 Score=42.74 Aligned_cols=82 Identities=20% Similarity=0.340 Sum_probs=58.9
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHH
Q 026320 59 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 138 (240)
Q Consensus 59 ~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~ 138 (240)
+..++.|.++|-|-+| .+....|+.+.+.|.-|.-.+|..-.... .++.+....+ -.++.+++
T Consensus 100 rl~~eaGa~aVkiEgg------~~~~~~i~~l~~~gIpV~gHiGltPq~a~-------~~ggy~~qgr----t~~~a~~~ 162 (263)
T TIGR00222 100 RVMQETGANAVKLEGG------EWLVETVQMLTERGVPVVGHLGLTPQSVN-------ILGGYKVQGK----DEEAAKKL 162 (263)
T ss_pred HHHHHhCCeEEEEcCc------HhHHHHHHHHHHCCCCEEEecCCCceeEe-------ecCCeeecCC----CHHHHHHH
Confidence 6677889999999998 55678899999999999988877432110 0011111000 01235799
Q ss_pred HHHHHHHHHcCCcEEEEec
Q 026320 139 IRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 139 i~~~~~dLeAGA~~ViiEa 157 (240)
|+++++-.+|||+.|.+|+
T Consensus 163 i~~A~a~e~AGA~~ivlE~ 181 (263)
T TIGR00222 163 LEDALALEEAGAQLLVLEC 181 (263)
T ss_pred HHHHHHHHHcCCCEEEEcC
Confidence 9999999999999999998
No 80
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=93.42 E-value=0.69 Score=46.12 Aligned_cols=96 Identities=21% Similarity=0.296 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
-++.+++.+.+.|++.+-|.|..-++ +.....|+.+++.|..+...+...- + | .
T Consensus 98 vv~~fv~~a~~~Gidi~RIfd~lndv--~nl~~ai~~vk~ag~~~~~~i~yt~--s---------------p-------~ 151 (499)
T PRK12330 98 VVDRFVEKSAENGMDVFRVFDALNDP--RNLEHAMKAVKKVGKHAQGTICYTV--S---------------P-------I 151 (499)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCChH--HHHHHHHHHHHHhCCeEEEEEEEec--C---------------C-------C
Confidence 67889999999999999999999988 5555689999999987755554411 1 1 1
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
.|++.+++.+++-.++||+.| .|.|..|-..+..+.++++.+
T Consensus 152 ~t~e~~~~~a~~l~~~Gad~I-----~IkDtaGll~P~~~~~LV~~L 193 (499)
T PRK12330 152 HTVEGFVEQAKRLLDMGADSI-----CIKDMAALLKPQPAYDIVKGI 193 (499)
T ss_pred CCHHHHHHHHHHHHHcCCCEE-----EeCCCccCCCHHHHHHHHHHH
Confidence 158999999999999999977 467888888888777777654
No 81
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=93.40 E-value=2.7 Score=38.31 Aligned_cols=143 Identities=11% Similarity=0.026 Sum_probs=92.2
Q ss_pred chHHHHHHHHHH-cCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecC-CCCCCCccccccccccccCC
Q 026320 52 SAFKEYVEDCKQ-VGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFN-KSDIPSDRDRAFGAYVARAP 126 (240)
Q Consensus 52 ~~~~~yl~~~k~-lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~-~~evg~~~d~~~~~~~~~~~ 126 (240)
+.++++++++.+ .|.+.|=+.-.| ..|+.++|.++++.+.+. ..-+.+ ..-+|
T Consensus 24 ~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~-------~~~~~~viagvg--------------- 81 (293)
T PRK04147 24 QGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEE-------AKGKVKLIAQVG--------------- 81 (293)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHH-------hCCCCCEEecCC---------------
Confidence 368899999999 999999886553 589999999999999883 221111 00011
Q ss_pred CCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCchh---HHHHHHHhCC
Q 026320 127 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRT---SEWFIRRYGP 203 (240)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifEAP~k~q---Q~~~I~~fG~ 203 (240)
..+..+.+++++..-++||+.|++=.--.+...-+---+-..++++..++.-+++-.|.... -..++.++-.
T Consensus 82 -----~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~ 156 (293)
T PRK04147 82 -----SVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFT 156 (293)
T ss_pred -----CCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhc
Confidence 11468889999999999999999987544333221123334556677777778887774322 3445555543
Q ss_pred Cccc-c--cCCCCchhhhhhh
Q 026320 204 KVNL-F--VDHSQVMDLECLR 221 (240)
Q Consensus 204 ~VNL-g--I~~~dVl~LE~LR 221 (240)
.=|+ | -...|+..+..++
T Consensus 157 ~pnvvgiK~s~~d~~~~~~~~ 177 (293)
T PRK04147 157 LPKVIGVKQTAGDLYQLERIR 177 (293)
T ss_pred CCCEEEEEeCCCCHHHHHHHH
Confidence 3344 3 4455666655554
No 82
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=93.39 E-value=1.4 Score=40.70 Aligned_cols=117 Identities=18% Similarity=0.278 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 026320 22 FIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 99 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~ 99 (240)
..-+.++..++.++.+.-+ |+.--.+.+| ++.|++.|++.|++.+=| .+||.++..++...++++|+..++
T Consensus 80 ~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~G---ie~F~~~~~~~GvdGliv----pDLP~ee~~~~~~~~~~~gi~~I~ 152 (265)
T COG0159 80 DTLELVEEIRAKGVKVPIVLMTYYNPIFNYG---IEKFLRRAKEAGVDGLLV----PDLPPEESDELLKAAEKHGIDPIF 152 (265)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHHHhh---HHHHHHHHHHcCCCEEEe----CCCChHHHHHHHHHHHHcCCcEEE
Confidence 4556777778777766655 7888888885 999999999999998876 579999999999999999888777
Q ss_pred eeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-ccccCCCCccHHHHHHHHhc
Q 026320 100 KFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-DVCKHADSLRADIIAKVIGR 178 (240)
Q Consensus 100 E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-gi~d~~g~~r~d~v~~i~~~ 178 (240)
=+-.. +++++++.+ .++..-+|-.=++ |++........+ +.+++++
T Consensus 153 lvaPt-----------------------------t~~~rl~~i---~~~a~GFiY~vs~~GvTG~~~~~~~~-~~~~v~~ 199 (265)
T COG0159 153 LVAPT-----------------------------TPDERLKKI---AEAASGFIYYVSRMGVTGARNPVSAD-VKELVKR 199 (265)
T ss_pred EeCCC-----------------------------CCHHHHHHH---HHhCCCcEEEEecccccCCCcccchh-HHHHHHH
Confidence 44331 234455544 4566667777787 887777665444 5555543
No 83
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=93.31 E-value=0.72 Score=41.64 Aligned_cols=97 Identities=16% Similarity=0.188 Sum_probs=64.2
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHH
Q 026320 59 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 138 (240)
Q Consensus 59 ~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~ 138 (240)
+..-+.|.++|-|=|+. +..+.|+.+++.++.|.-..+.... +-.....++.+++. ..+.++.
T Consensus 96 ~~l~~aGa~gv~iED~~------~~~~~i~ai~~a~i~ViaRtd~~pq-~~~~~gg~~~~~~~----------~~~~~~a 158 (240)
T cd06556 96 KTFMRAGAAGVKIEGGE------WHIETLQMLTAAAVPVIAHTGLTPQ-SVNTSGGDEGQYRG----------DEAGEQL 158 (240)
T ss_pred HHHHHcCCcEEEEcCcH------HHHHHHHHHHHcCCeEEEEeCCchh-hhhccCCceeeccC----------HHHHHHH
Confidence 33345899999999984 4566788899998776665554210 00000111111110 1247899
Q ss_pred HHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCC
Q 026320 139 IRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL 181 (240)
Q Consensus 139 i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~ 181 (240)
|++++...+|||+.|.+|+. ..+++.+|.+.++.
T Consensus 159 i~Ra~ay~~AGAd~i~~e~~---------~~e~~~~i~~~~~~ 192 (240)
T cd06556 159 IADALAYAPAGADLIVMECV---------PVELAKQITEALAI 192 (240)
T ss_pred HHHHHHHHHcCCCEEEEcCC---------CHHHHHHHHHhCCC
Confidence 99999999999999999963 47778888877663
No 84
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=93.29 E-value=1.3 Score=38.13 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=15.8
Q ss_pred CCCcccEEEecCccccccChhHHHH
Q 026320 1 MGQFVDGLKFSGGSHSLMPKPFIEE 25 (240)
Q Consensus 1 ~g~yID~lKfg~GTs~l~p~~~l~e 25 (240)
.++++|.+|.|..-..-+..+.+++
T Consensus 25 ~~~~~~~vk~g~~l~~~~G~~~v~~ 49 (215)
T PRK13813 25 LDDYVDAIKVGWPLVLASGLGIIEE 49 (215)
T ss_pred ccccCCEEEEcHHHHHhhCHHHHHH
Confidence 3688999999965544455444433
No 85
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=93.25 E-value=0.95 Score=40.60 Aligned_cols=92 Identities=15% Similarity=0.229 Sum_probs=68.4
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccC
Q 026320 55 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 134 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 134 (240)
.+.++.+.+.|.+.|-|..-.-++ +.-.+.++.+++.|+.|.. ...+. + ..+
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~--~~~~~~i~~ak~~G~~v~~--~~~~~-~-----------------------~~~ 139 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEA--DVSEQHIGAARKLGMDVVG--FLMMS-H-----------------------MAS 139 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhH--HHHHHHHHHHHHCCCeEEE--EEEec-c-----------------------CCC
Confidence 356788899999999986543332 3556799999999986433 33211 0 015
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 135 VDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 135 ~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
++.+++.+++..++||+.|- +.|..|...++.+.++++.+
T Consensus 140 ~~~~~~~~~~~~~~G~d~i~-----l~DT~G~~~P~~v~~lv~~l 179 (263)
T cd07943 140 PEELAEQAKLMESYGADCVY-----VTDSAGAMLPDDVRERVRAL 179 (263)
T ss_pred HHHHHHHHHHHHHcCCCEEE-----EcCCCCCcCHHHHHHHHHHH
Confidence 78999999999999999764 78899999999998888644
No 86
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=93.24 E-value=0.68 Score=42.59 Aligned_cols=99 Identities=13% Similarity=0.110 Sum_probs=68.8
Q ss_pred HHHHHHHHcCCCEEEecCCcccC--------Chh----HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 026320 56 EYVEDCKQVGFDTIELNVGSLEI--------PEE----TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 123 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti~l--------~~~----~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~ 123 (240)
+=++.+.+.|.+.|-+...+-+. +.+ .-.+.|+.+++.|++|..-+..-+.. ..+
T Consensus 83 ~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~-----~~~-------- 149 (287)
T PRK05692 83 KGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGC-----PYE-------- 149 (287)
T ss_pred HHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecC-----CCC--------
Confidence 33578889999999998655322 222 34579999999999876544443211 011
Q ss_pred cCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 124 RAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 124 ~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
+..|++.+++.+++..++||+.|. +.|..|-..+..+.++++.+
T Consensus 150 -------~~~~~~~~~~~~~~~~~~G~d~i~-----l~DT~G~~~P~~v~~lv~~l 193 (287)
T PRK05692 150 -------GEVPPEAVADVAERLFALGCYEIS-----LGDTIGVGTPGQVRAVLEAV 193 (287)
T ss_pred -------CCCCHHHHHHHHHHHHHcCCcEEE-----eccccCccCHHHHHHHHHHH
Confidence 112689999999999999999764 57788888888777777543
No 87
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=93.21 E-value=2.7 Score=38.49 Aligned_cols=79 Identities=13% Similarity=0.176 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHcC-CCEEEecCC---cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 026320 53 AFKEYVEDCKQVG-FDTIELNVG---SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 128 (240)
Q Consensus 53 ~~~~yl~~~k~lG-F~~IEISdG---ti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 128 (240)
.+.++++++.+.| .+.|=+.-. +..|+.++|.++++.+.+. +...+.+-.+ ++
T Consensus 22 ~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~---~~~~~pvi~g---v~----------------- 78 (290)
T TIGR00683 22 GLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDE---AKDQIALIAQ---VG----------------- 78 (290)
T ss_pred HHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHH---hCCCCcEEEe---cC-----------------
Confidence 6888999999999 999887754 3589999999999998883 1111111111 10
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 129 TEYVEDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 129 ~~~~~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
..+.++.++.++..-++||+.|++=.
T Consensus 79 ---~~~t~~~i~la~~a~~~Gad~v~v~~ 104 (290)
T TIGR00683 79 ---SVNLKEAVELGKYATELGYDCLSAVT 104 (290)
T ss_pred ---CCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 01467889999999999999999944
No 88
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=93.16 E-value=1.5 Score=40.00 Aligned_cols=60 Identities=15% Similarity=0.277 Sum_probs=49.8
Q ss_pred CCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 026320 33 HDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 99 (240)
Q Consensus 33 ~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~ 99 (240)
.++++..=|++...+..| +++|++.|++.|++.+=|. +||.++..++++.++++|+..++
T Consensus 88 ~~~p~vlm~Y~N~i~~~G---~e~f~~~~~~aGvdGviip----DLp~ee~~~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 88 PTIPIVLMTYYNPIFQYG---VERFAADAAEAGVDGLIIP----DLPPEEAEELRAAAKKHGLDLIF 147 (258)
T ss_pred CCCCEEEEecccHHhhcC---HHHHHHHHHHcCCcEEEEC----CCCHHHHHHHHHHHHHcCCcEEE
Confidence 455444336777777775 9999999999999999996 68999999999999999998775
No 89
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=93.13 E-value=0.85 Score=42.93 Aligned_cols=91 Identities=14% Similarity=0.189 Sum_probs=69.9
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCH
Q 026320 56 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 135 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~ 135 (240)
+-++.+.+.|.+.|-|....-+. +.-.+.|+.+++.|++|. +...... ..++
T Consensus 92 ~dl~~a~~~gvd~iri~~~~~e~--~~~~~~i~~ak~~G~~v~--~~l~~a~------------------------~~~~ 143 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVATHCTEA--DVSEQHIGLARELGMDTV--GFLMMSH------------------------MAPP 143 (337)
T ss_pred HHHHHHHHcCCCEEEEEEecchH--HHHHHHHHHHHHCCCeEE--EEEEecc------------------------CCCH
Confidence 45788999999999998755443 345689999999998753 3442210 1158
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 136 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 136 ~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
+.++++++...++||+.| .+.|..|...++.+.+++..+
T Consensus 144 e~l~~~a~~~~~~Ga~~i-----~i~DT~G~~~P~~v~~~v~~l 182 (337)
T PRK08195 144 EKLAEQAKLMESYGAQCV-----YVVDSAGALLPEDVRDRVRAL 182 (337)
T ss_pred HHHHHHHHHHHhCCCCEE-----EeCCCCCCCCHHHHHHHHHHH
Confidence 999999999999999976 468999999999999888643
No 90
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=93.05 E-value=1.3 Score=43.70 Aligned_cols=142 Identities=14% Similarity=0.123 Sum_probs=93.0
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCCceecCC---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChh
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEE 81 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~G---tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~ 81 (240)
||.+-+....+- .+.+++-++.++++|..+... |+- - ...++.+-++.+.+.+.|.+.|=|.|-.--+.+.
T Consensus 109 vd~irif~~lnd---~~n~~~~i~~ak~~G~~v~~~i~~t~~-p--~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~ 182 (467)
T PRK14041 109 LDIIRIFDALND---IRNLEKSIEVAKKHGAHVQGAISYTVS-P--VHTLEYYLEFARELVDMGVDSICIKDMAGLLTPK 182 (467)
T ss_pred cCEEEEEEeCCH---HHHHHHHHHHHHHCCCEEEEEEEeccC-C--CCCHHHHHHHHHHHHHcCCCEEEECCccCCcCHH
Confidence 555555544443 356888888888888866521 110 0 1122356666777788899999999999999999
Q ss_pred HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccc
Q 026320 82 TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVC 161 (240)
Q Consensus 82 ~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~ 161 (240)
+-.++|+.+++. +.+ .++... +. |...-+-..-..++|||+.|=.=-.|+-
T Consensus 183 ~v~~Lv~~lk~~-~~v--pI~~H~-Hn-------------------------t~GlA~AN~laAieaGad~vD~sv~~~g 233 (467)
T PRK14041 183 RAYELVKALKKK-FGV--PVEVHS-HC-------------------------TTGLASLAYLAAVEAGADMFDTAISPFS 233 (467)
T ss_pred HHHHHHHHHHHh-cCC--ceEEEe-cC-------------------------CCCcHHHHHHHHHHhCCCEEEeeccccC
Confidence 999999999874 221 234422 11 1233366777789999996433334787
Q ss_pred cCCCCccHHHHHHHHhccCC
Q 026320 162 KHADSLRADIIAKVIGRLGL 181 (240)
Q Consensus 162 d~~g~~r~d~v~~i~~~~~~ 181 (240)
...||..++.+-..++..|.
T Consensus 234 ~gagN~atE~lv~~L~~~g~ 253 (467)
T PRK14041 234 MGTSQPPFESMYYAFRENGK 253 (467)
T ss_pred CCCCChhHHHHHHHHHhcCC
Confidence 88899888877777666553
No 91
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=93.04 E-value=0.4 Score=45.29 Aligned_cols=178 Identities=20% Similarity=0.249 Sum_probs=93.7
Q ss_pred CcccEEEecCccccccChhHHHHHHHHHHhCCceecC--------C-cHHHHHHHhCC----chHHHHHHHHHHcCCCEE
Q 026320 3 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--------G-DWAEHLIRNGP----SAFKEYVEDCKQVGFDTI 69 (240)
Q Consensus 3 ~yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~--------G-tl~E~a~~qg~----~~~~~yl~~~k~lGF~~I 69 (240)
+|||.+ .-|+-+++..+. ..-|+.||+|||+|.+ + .+++.++.+++ --+++.++.|+.+|||.+
T Consensus 31 ~yvD~f-vywsh~~~~iPp--~~~idaAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw 107 (339)
T cd06547 31 QYVDTF-VYFSHSAVTIPP--ADWINAAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGW 107 (339)
T ss_pred hhhhee-ecccCccccCCC--cHHHHHHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHHHHHHhCCCce
Confidence 578877 445555554421 4678899999999873 1 25666666522 127889999999999998
Q ss_pred EecCCcccCChhHHHHHH---HHHHHcCCcccceeeee-----------cCCCCCCCcccccc----ccccccCCCCccc
Q 026320 70 ELNVGSLEIPEETLLRYV---RLVKSAGLKAKPKFAVM-----------FNKSDIPSDRDRAF----GAYVARAPRSTEY 131 (240)
Q Consensus 70 EISdGti~l~~~~r~~lI---~~~~~~G~~v~~E~g~k-----------~~~~evg~~~d~~~----~~~~~~~~~~~~~ 131 (240)
=|+-=+..-+.+.+.+++ +.+++..=+-.|.+-+. ..-.+... ++..| .....-+.|....
T Consensus 108 ~iN~E~~~~~~~~~~~l~~F~~~L~~~~~~~~~~~~v~WYDs~t~~G~l~wQn~Ln~-~N~~ff~~~D~~FlNY~W~~~~ 186 (339)
T cd06547 108 LINIETELGDAEKAKRLIAFLRYLKAKLHENVPGSLVIWYDSMTEDGKLSWQNELNS-KNKPFFDVCDGIFLNYWWTEES 186 (339)
T ss_pred EeeeeccCCcHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCCCccchhhhhhH-HHHHHHhhhcceeEecCCCcch
Confidence 887666542444444444 44444311111112111 00011110 11110 0112345665433
Q ss_pred ccCHHHHHHHH---HHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecC
Q 026320 132 VEDVDLLIRRA---ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 189 (240)
Q Consensus 132 ~~~~~~~i~~~---~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifEAP 189 (240)
.+.-.+..+.+ ..||=+|.|. .+||.+ ..+++.++..-..+.+.++.-=|| ||
T Consensus 187 l~~s~~~a~~~g~~~~dvy~GiDv---~grg~~-~~~~~~~~~~~~~~~~~~~Svalf-ap 242 (339)
T cd06547 187 LERSVQLAEGLGRSPYDVYVGVDV---WGRGTK-GGGGWNSDKALDEIKKAGLSVALF-AP 242 (339)
T ss_pred HHHHHHHHHHcCCCHhHEEEEEEE---EcCCcc-cCCCCchhhhhhhhcccCeEEEEE-cC
Confidence 22222222222 3466667664 478754 456665555555556666666677 66
No 92
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=93.02 E-value=0.86 Score=42.88 Aligned_cols=91 Identities=14% Similarity=0.189 Sum_probs=69.9
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCH
Q 026320 56 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 135 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~ 135 (240)
+-++.+.+.|.+.|-|....-+.+ .-.+.|+.+++.|++|. +...... ..++
T Consensus 91 ~dl~~a~~~gvd~iri~~~~~e~d--~~~~~i~~ak~~G~~v~--~~l~~s~------------------------~~~~ 142 (333)
T TIGR03217 91 HDLKAAYDAGARTVRVATHCTEAD--VSEQHIGMARELGMDTV--GFLMMSH------------------------MTPP 142 (333)
T ss_pred HHHHHHHHCCCCEEEEEeccchHH--HHHHHHHHHHHcCCeEE--EEEEccc------------------------CCCH
Confidence 457889999999999987655543 34689999999998754 3332210 1158
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 136 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 136 ~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
+.++++++.-.++||+.| .|.|..|...++.+.+++..+
T Consensus 143 e~l~~~a~~~~~~Ga~~i-----~i~DT~G~~~P~~v~~~v~~l 181 (333)
T TIGR03217 143 EKLAEQAKLMESYGADCV-----YIVDSAGAMLPDDVRDRVRAL 181 (333)
T ss_pred HHHHHHHHHHHhcCCCEE-----EEccCCCCCCHHHHHHHHHHH
Confidence 999999999999999976 478999999999998888644
No 93
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=93.00 E-value=0.89 Score=40.68 Aligned_cols=132 Identities=23% Similarity=0.253 Sum_probs=86.6
Q ss_pred ccChhHHHHHHHHHHhCCcee----cC--C-cH---HHHHHHhCCc--------hHHHHHHHHHHcCCCEEEecCCcccC
Q 026320 17 LMPKPFIEEVVKRAHQHDVYV----ST--G-DW---AEHLIRNGPS--------AFKEYVEDCKQVGFDTIELNVGSLEI 78 (240)
Q Consensus 17 l~p~~~l~eKi~l~~~~gV~v----~~--G-tl---~E~a~~qg~~--------~~~~yl~~~k~lGF~~IEISdGti~l 78 (240)
.++.+...+-++.+.+.||.. +| + +- ++.+...+++ .-.+-++.+.+.|++.|-++..+-+.
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~~s~~ 95 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVGIPAMGEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVHISIPVSDI 95 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEEEEEecCHH
Confidence 355556666677777777733 23 2 21 2222221110 12556788899999999997644333
Q ss_pred C--------h----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHH
Q 026320 79 P--------E----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCL 146 (240)
Q Consensus 79 ~--------~----~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dL 146 (240)
. . +.-.+.++.+++.|+.|. |+..+.. ..+++.+.+.+++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~~~~~------------------------~~~~~~~~~~~~~~~ 149 (259)
T cd07939 96 HLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS--VGAEDAS------------------------RADPDFLIEFAEVAQ 149 (259)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE--EeeccCC------------------------CCCHHHHHHHHHHHH
Confidence 1 1 234578999999998653 4442210 115899999999999
Q ss_pred HcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 147 EAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 147 eAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
++|++.| .++|..|...++.+.+++..+
T Consensus 150 ~~G~~~i-----~l~DT~G~~~P~~v~~lv~~l 177 (259)
T cd07939 150 EAGADRL-----RFADTVGILDPFTTYELIRRL 177 (259)
T ss_pred HCCCCEE-----EeCCCCCCCCHHHHHHHHHHH
Confidence 9999976 478999999999999888643
No 94
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=92.95 E-value=1 Score=42.62 Aligned_cols=96 Identities=26% Similarity=0.389 Sum_probs=71.9
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccC--------Ch----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSLEI--------PE----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 121 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti~l--------~~----~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~ 121 (240)
..+-++.+.+.|.+.|.|+..+=++ +. +.-.+.|+.+++.|++| +++..+..
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v--~~~~eda~-------------- 136 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIV--EFSAEDAT-------------- 136 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEE--EEEEeecC--------------
Confidence 3566888999999999997765333 33 44457899999999876 46653210
Q ss_pred cccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 026320 122 VARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 122 ~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~ 180 (240)
..|++.+++.+++..++||+.|. ++|..|...++.+.++++.+-
T Consensus 137 ----------r~~~~~l~~~~~~~~~~g~~~i~-----l~DT~G~~~P~~v~~li~~l~ 180 (363)
T TIGR02090 137 ----------RTDIDFLIKVFKRAEEAGADRIN-----IADTVGVLTPQKMEELIKKLK 180 (363)
T ss_pred ----------CCCHHHHHHHHHHHHhCCCCEEE-----EeCCCCccCHHHHHHHHHHHh
Confidence 11589999999999999998764 688889999988888887653
No 95
>PRK00915 2-isopropylmalate synthase; Validated
Probab=92.93 E-value=0.99 Score=44.81 Aligned_cols=96 Identities=20% Similarity=0.224 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChh--------H----HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEE--------T----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 120 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~--------~----r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~ 120 (240)
.++.-++..++.|.+.|-+...+-++-.. + -.+.|+.+++.|++| +|+..+..
T Consensus 80 did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v--~f~~ed~~------------- 144 (513)
T PRK00915 80 DIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDV--EFSAEDAT------------- 144 (513)
T ss_pred HHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE--EEEeCCCC-------------
Confidence 46666666668899999998877544322 2 247899999999886 45553210
Q ss_pred ccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 121 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
..|++.+++.++...++||+.| .++|..|-..+..+.++++.+
T Consensus 145 -----------r~d~~~l~~~~~~~~~~Ga~~i-----~l~DTvG~~~P~~~~~~i~~l 187 (513)
T PRK00915 145 -----------RTDLDFLCRVVEAAIDAGATTI-----NIPDTVGYTTPEEFGELIKTL 187 (513)
T ss_pred -----------CCCHHHHHHHHHHHHHcCCCEE-----EEccCCCCCCHHHHHHHHHHH
Confidence 1258899999999999999865 478999999999888888644
No 96
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=92.92 E-value=0.71 Score=45.28 Aligned_cols=143 Identities=14% Similarity=0.164 Sum_probs=96.3
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCCceec--CC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChh
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--TG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEE 81 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~--~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~ 81 (240)
||.+-+....+-+ +.+++-++.++++|..+. .. ++-. ...++.+.++.+.+.+.|.+.|=|.|-.--+.+.
T Consensus 110 vd~irif~~lnd~---~n~~~~v~~ak~~G~~v~~~i~~t~~p---~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~ 183 (448)
T PRK12331 110 IDIIRIFDALNDV---RNLETAVKATKKAGGHAQVAISYTTSP---VHTIDYFVKLAKEMQEMGADSICIKDMAGILTPY 183 (448)
T ss_pred CCEEEEEEecCcH---HHHHHHHHHHHHcCCeEEEEEEeecCC---CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHH
Confidence 6666666554444 368888999999996432 11 1101 1333467777888889999999999999999999
Q ss_pred HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccc
Q 026320 82 TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVC 161 (240)
Q Consensus 82 ~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~ 161 (240)
+-.++|+.+++. +. ..++... +. |...-+-..-..++|||+.|=.=-.|+-
T Consensus 184 ~v~~lv~alk~~-~~--~pi~~H~-Hn-------------------------t~GlA~AN~laAieaGad~vD~sv~glg 234 (448)
T PRK12331 184 VAYELVKRIKEA-VT--VPLEVHT-HA-------------------------TSGIAEMTYLKAIEAGADIIDTAISPFA 234 (448)
T ss_pred HHHHHHHHHHHh-cC--CeEEEEe-cC-------------------------CCCcHHHHHHHHHHcCCCEEEeeccccC
Confidence 999999999874 22 1244432 11 1233366777789999996533334777
Q ss_pred cCCCCccHHHHHHHHhccCCC
Q 026320 162 KHADSLRADIIAKVIGRLGLE 182 (240)
Q Consensus 162 d~~g~~r~d~v~~i~~~~~~~ 182 (240)
...||..++.+-..++..|.+
T Consensus 235 ~gaGN~~tE~lv~~L~~~g~~ 255 (448)
T PRK12331 235 GGTSQPATESMVAALQDLGYD 255 (448)
T ss_pred CCcCCHhHHHHHHHHHhcCCC
Confidence 789999888777777665543
No 97
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=92.82 E-value=0.55 Score=41.48 Aligned_cols=117 Identities=15% Similarity=0.230 Sum_probs=66.6
Q ss_pred CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCc
Q 026320 34 DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSD 113 (240)
Q Consensus 34 gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~ 113 (240)
||.++.|- -.++-. -+.++++.||+.|+.+.=.++|+. |.+...+++..+.. --+-+|..
T Consensus 41 GVt~SGGE---Pllq~~--fl~~l~~~~k~~gi~~~leTnG~~--~~~~~~~l~~~~D~------~l~DiK~~------- 100 (213)
T PRK10076 41 GVTLSGGE---VLMQAE--FATRFLQRLRLWGVSCAIETAGDA--PASKLLPLAKLCDE------VLFDLKIM------- 100 (213)
T ss_pred EEEEeCch---HHcCHH--HHHHHHHHHHHcCCCEEEECCCCC--CHHHHHHHHHhcCE------EEEeeccC-------
Confidence 67777673 222222 468899999999999999999986 44555555443321 12333321
Q ss_pred cccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-----ccccCCCCccHHHHHHHHhccCCCce
Q 026320 114 RDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRLGLEKT 184 (240)
Q Consensus 114 ~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-----gi~d~~g~~r~d~v~~i~~~~~~~~l 184 (240)
|+..-..++ -.+.+.+++.++.-.++|.+ +|-| |+.|+..+++ .+.++++.++++++
T Consensus 101 -d~~~~~~~t--------G~~~~~il~nl~~l~~~g~~---v~iR~~vIPg~nd~~e~i~--~ia~~l~~l~~~~~ 162 (213)
T PRK10076 101 -DATQARDVV--------KMNLPRVLENLRLLVSEGVN---VIPRLPLIPGFTLSRENMQ--QALDVLIPLGIKQI 162 (213)
T ss_pred -CHHHHHHHH--------CCCHHHHHHHHHHHHhCCCc---EEEEEEEECCCCCCHHHHH--HHHHHHHHcCCceE
Confidence 111111111 02457788889999999986 3446 5555544432 24445555565533
No 98
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=92.80 E-value=0.52 Score=43.33 Aligned_cols=58 Identities=26% Similarity=0.443 Sum_probs=45.9
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCccccee
Q 026320 43 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPKF 101 (240)
Q Consensus 43 ~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~l~~~~r~~lI~~~~~~G~~v~~E~ 101 (240)
.|.|+-.+ -+..+=+..+|++|||-||+|-.- ++-+.++|..+++...+.|+..-|-+
T Consensus 10 YEKAlp~~-~sW~erl~~AK~~GFDFvEmSvDEsDeRLaRLDWs~~er~~l~~ai~etgv~ipSmC 74 (287)
T COG3623 10 YEKALPNG-FSWLERLALAKELGFDFVEMSVDESDERLARLDWSKEERLALVNAIQETGVRIPSMC 74 (287)
T ss_pred ehhhccCC-CCHHHHHHHHHHcCCCeEEEeccchHHHHHhcCCCHHHHHHHHHHHHHhCCCccchh
Confidence 36666543 356677788899999999999653 58899999999999999998866643
No 99
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=92.80 E-value=0.84 Score=46.27 Aligned_cols=96 Identities=16% Similarity=0.238 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
-++.+++.+.+.|.+.|-|.+..-++ +...+.|+.+++.|+.|. ..+-.- . +|.
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~--~n~~~~i~~ak~~G~~v~--~~i~~t---~------------~p~------- 150 (592)
T PRK09282 97 VVEKFVEKAAENGIDIFRIFDALNDV--RNMEVAIKAAKKAGAHVQ--GTISYT---T------------SPV------- 150 (592)
T ss_pred hhHHHHHHHHHCCCCEEEEEEecChH--HHHHHHHHHHHHcCCEEE--EEEEec---c------------CCC-------
Confidence 47889999999999999999888776 445678999999998754 344110 0 111
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
-|++.+++.+++-.++||+.| .|+|..|-..+..+.++++.+
T Consensus 151 ~t~~~~~~~a~~l~~~Gad~I-----~i~Dt~G~~~P~~~~~lv~~l 192 (592)
T PRK09282 151 HTIEKYVELAKELEEMGCDSI-----CIKDMAGLLTPYAAYELVKAL 192 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEE-----EECCcCCCcCHHHHHHHHHHH
Confidence 158999999999999999976 478999999999888888654
No 100
>PRK00915 2-isopropylmalate synthase; Validated
Probab=92.75 E-value=0.97 Score=44.88 Aligned_cols=124 Identities=19% Similarity=0.183 Sum_probs=91.1
Q ss_pred HHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcc--cce
Q 026320 23 IEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA--KPK 100 (240)
Q Consensus 23 l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v--~~E 100 (240)
+.+-++.++++|..|..+ .|.+...+++.+.++++.+.+.|.+.|-+.|-.--+.+.+-.++|+.++++ +.- ...
T Consensus 122 ~~~~v~~ak~~g~~v~f~--~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~-~~~~~~v~ 198 (513)
T PRK00915 122 AVEAVKYARSYTDDVEFS--AEDATRTDLDFLCRVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRER-VPNIDKAI 198 (513)
T ss_pred HHHHHHHHHHCCCeEEEE--eCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHh-CCCcccce
Confidence 478899999999977644 223334445578888899999999999999999999999999999999874 210 013
Q ss_pred eeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCccHHHHHHHHh
Q 026320 101 FAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG 177 (240)
Q Consensus 101 ~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~v~~i~~ 177 (240)
+++.+ -.|....+-.....++|||++ |++- |+=+..||...+.+-..+.
T Consensus 199 l~~H~--------------------------HND~GlAvANslaAv~aGa~~--Vd~Tv~GlGERaGNa~lE~vv~~L~ 249 (513)
T PRK00915 199 ISVHC--------------------------HNDLGLAVANSLAAVEAGARQ--VECTINGIGERAGNAALEEVVMALK 249 (513)
T ss_pred EEEEe--------------------------cCCCCHHHHHHHHHHHhCCCE--EEEEeecccccccCccHHHHHHHHH
Confidence 44432 123344577778889999996 4775 8878899988777665553
No 101
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=92.73 E-value=4.4 Score=36.79 Aligned_cols=111 Identities=17% Similarity=0.163 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHc-CCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 026320 53 AFKEYVEDCKQV-GFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 128 (240)
Q Consensus 53 ~~~~yl~~~k~l-GF~~IEISdGt---i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 128 (240)
.+.++++++.+. |.+.|=+.-.| ..|+.++|.++++.+.+. +...+.+-.+ + ..
T Consensus 22 ~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~---~~~~~~viag---v--~~-------------- 79 (288)
T cd00954 22 VLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEA---AKGKVTLIAH---V--GS-------------- 79 (288)
T ss_pred HHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHH---hCCCCeEEec---c--CC--------------
Confidence 678889999888 99998776543 589999999999988873 1111111111 1 00
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc-CCCceEEecC
Q 026320 129 TEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL-GLEKTMFEAT 189 (240)
Q Consensus 129 ~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~-~~~~lifEAP 189 (240)
.+.++.++.++..-++||+.||+=.--.+...-+---+-..+|++.. ++.=+++-.|
T Consensus 80 ----~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P 137 (288)
T cd00954 80 ----LNLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIP 137 (288)
T ss_pred ----CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 14688899999999999999997554222211111122334445555 4555555555
No 102
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=92.63 E-value=1.4 Score=40.49 Aligned_cols=127 Identities=13% Similarity=0.089 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhCCceecCCcHHHHHHHhCCc-----hHHHHHHHHHHcCCC-EEEecCCcccCCh-------hHHHHHHH
Q 026320 22 FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPS-----AFKEYVEDCKQVGFD-TIELNVGSLEIPE-------ETLLRYVR 88 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~-----~~~~yl~~~k~lGF~-~IEISdGti~l~~-------~~r~~lI~ 88 (240)
.+++-+++++++|..+..+- |-+..-+++ -++++++.+.+.|.+ .|=+.|-.--..+ ++-.++++
T Consensus 116 ~~~~~v~~a~~~g~~v~~~~--ed~~r~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~ 193 (279)
T cd07947 116 KYLEIVEEALDHGIKPRCHL--EDITRADIYGFVLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIY 193 (279)
T ss_pred HHHHHHHHHHHCCCeEEEEE--EcccCCCcccchHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHH
Confidence 46778899999998655321 323333221 456666777779999 6888887764444 45568888
Q ss_pred HHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCC
Q 026320 89 LVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHAD 165 (240)
Q Consensus 89 ~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g 165 (240)
.+++. ++ +-.+++..+ + .|...-+..+...++|||++ +++- |+=+..|
T Consensus 194 ~l~~~~~~-p~~~l~~H~-H-------------------------n~~Gla~AN~laA~~aG~~~--vd~sv~GlGe~aG 244 (279)
T cd07947 194 GLRKDCGV-PSENLEWHG-H-------------------------NDFYKAVANAVAAWLYGASW--VNCTLLGIGERTG 244 (279)
T ss_pred HHHHhcCC-CCceEEEEe-c-------------------------CCCChHHHHHHHHHHhCCCE--EEEeccccccccc
Confidence 88763 21 111344433 1 13345577888889999997 5554 8888999
Q ss_pred CccHHHHHHHHhcc
Q 026320 166 SLRADIIAKVIGRL 179 (240)
Q Consensus 166 ~~r~d~v~~i~~~~ 179 (240)
|..++.+-..+..+
T Consensus 245 N~~tE~lv~~l~~~ 258 (279)
T cd07947 245 NCPLEAMVIEYAQL 258 (279)
T ss_pred chhHHHHHHHHHHh
Confidence 99988877666554
No 103
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=92.61 E-value=1.1 Score=42.71 Aligned_cols=100 Identities=7% Similarity=0.004 Sum_probs=68.4
Q ss_pred HHHHHHHHHcCCCEEEecCCc--------ccCChhHH----HHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 026320 55 KEYVEDCKQVGFDTIELNVGS--------LEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 122 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGt--------i~l~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 122 (240)
.+=++.+.+.|.+.|-+.-.+ +..+.++= .++|+.+++.|++|.--+..-|+. .++
T Consensus 124 ~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~-----p~~------- 191 (347)
T PLN02746 124 LKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGC-----PIE------- 191 (347)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecC-----Ccc-------
Confidence 456778889999999887332 23344433 369999999999874333322211 111
Q ss_pred ccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 123 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 123 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
+..|++.+++.+++..++||+.|. |+|..|-..+..+.++++.+
T Consensus 192 --------~r~~~~~l~~~~~~~~~~Gad~I~-----l~DT~G~a~P~~v~~lv~~l 235 (347)
T PLN02746 192 --------GPVPPSKVAYVAKELYDMGCYEIS-----LGDTIGVGTPGTVVPMLEAV 235 (347)
T ss_pred --------CCCCHHHHHHHHHHHHHcCCCEEE-----ecCCcCCcCHHHHHHHHHHH
Confidence 112689999999999999999874 67888888887777777554
No 104
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=92.49 E-value=2.8 Score=36.94 Aligned_cols=143 Identities=14% Similarity=0.263 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSL------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 126 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti------~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 126 (240)
.+.+.++++.++||+.||+.-+.. .++.+...++.+.+++.|+++.. .+.-. . ... ..|+
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~-h~p~~-~-nl~-s~d~---------- 76 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSV-HAPYL-I-NLA-SPDK---------- 76 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEE-ECCce-e-cCC-CCCH----------
Confidence 567788999999999999986554 46778888888999999987432 11100 0 000 1111
Q ss_pred CCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHH-------HHHHHHhccCCCceEEec-C--------C
Q 026320 127 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRAD-------IIAKVIGRLGLEKTMFEA-T--------N 190 (240)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d-------~v~~i~~~~~~~~lifEA-P--------~ 190 (240)
.....+.+.+.+.++..-+.||..|.+-+ |.+.. .-+++ .+.++++.-.--+|.+|. | .
T Consensus 77 --~~r~~~~~~l~~~i~~A~~lGa~~vv~h~-g~~~~--~~~e~~~~~~~~~l~~l~~~~~gv~l~lEn~~~~~~~~~~~ 151 (273)
T smart00518 77 --EKVEKSIERLIDEIKRCEELGIKALVFHP-GSYLK--QSKEEALNRIIESLNEVIDETKGVVILLETTAGKGSQIGST 151 (273)
T ss_pred --HHHHHHHHHHHHHHHHHHHcCCCEEEEcc-ccccC--CCHHHHHHHHHHHHHHHHhccCCcEEEEeccCCCCCccCCC
Confidence 01122345566666666678999999854 32321 11233 333343320113467785 2 3
Q ss_pred chhHHHHHHHhC--CCcccccCCCCc
Q 026320 191 PRTSEWFIRRYG--PKVNLFVDHSQV 214 (240)
Q Consensus 191 k~qQ~~~I~~fG--~~VNLgI~~~dV 214 (240)
+.+-..+++..+ |++.+-+|+.+.
T Consensus 152 ~~~~~~ll~~v~~~~~~g~~lD~gH~ 177 (273)
T smart00518 152 FEDLKEIIDLIKELDRIGVCIDTCHI 177 (273)
T ss_pred HHHHHHHHHhcCCCCCeEEEEEccch
Confidence 345778888887 467665655554
No 105
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=92.47 E-value=1.5 Score=40.63 Aligned_cols=124 Identities=19% Similarity=0.258 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----------cCChhHHHHH
Q 026320 21 PFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-----------EIPEETLLRY 86 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-----------~l~~~~r~~l 86 (240)
+.+..--++++..++++.- .||-+ +..+.+.++...+.|.-.|-|-|.+. -+|.++..+-
T Consensus 60 e~~~~~~~I~~~~~iPviaD~d~GyG~------~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~k 133 (285)
T TIGR02317 60 EVAEDARRITRVTDLPLLVDADTGFGE------AFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDK 133 (285)
T ss_pred HHHHHHHHHHhccCCCEEEECCCCCCC------HHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHH
Confidence 3344444556677887774 24543 12455667778899999999998653 3688888888
Q ss_pred HHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCC
Q 026320 87 VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADS 166 (240)
Q Consensus 87 I~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~ 166 (240)
|+.+++.-- -++|-+- ..+ |. + + ....++.|+++++..+||||.|.+|+-
T Consensus 134 I~Aa~~a~~--~~d~~Ii---ART----Da-~--------~----~~g~deAI~Ra~ay~~AGAD~vfi~g~-------- 183 (285)
T TIGR02317 134 IAAAVDAKR--DEDFVII---ART----DA-R--------A----VEGLDAAIERAKAYVEAGADMIFPEAL-------- 183 (285)
T ss_pred HHHHHHhcc--CCCEEEE---EEc----Cc-c--------c----ccCHHHHHHHHHHHHHcCCCEEEeCCC--------
Confidence 888887522 1344441 111 11 0 0 124789999999999999999999972
Q ss_pred ccHHHHHHHHhccC
Q 026320 167 LRADIIAKVIGRLG 180 (240)
Q Consensus 167 ~r~d~v~~i~~~~~ 180 (240)
-..+.++++.+.++
T Consensus 184 ~~~e~i~~~~~~i~ 197 (285)
T TIGR02317 184 TSLEEFRQFAKAVK 197 (285)
T ss_pred CCHHHHHHHHHhcC
Confidence 13566777777765
No 106
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=92.42 E-value=1.1 Score=41.86 Aligned_cols=100 Identities=21% Similarity=0.312 Sum_probs=67.6
Q ss_pred ccChhHHHHHHHHHHhC-----Cceec--CC---cH------------HHHHHHhCCchHHHHHHHHHHcCCCEEEecCC
Q 026320 17 LMPKPFIEEVVKRAHQH-----DVYVS--TG---DW------------AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG 74 (240)
Q Consensus 17 l~p~~~l~eKi~l~~~~-----gV~v~--~G---tl------------~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdG 74 (240)
-++.+.+++.|+-.+++ ||.+. +. .. .++++..+. .++++++.+-+.+.+.|-.+-|
T Consensus 44 ~~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~G 122 (330)
T PF03060_consen 44 GLTPEQLREEIRKIRALTDKPFGVNLFLPPPDPADEEDAWPKELGNAVLELCIEEGV-PFEEQLDVALEAKPDVVSFGFG 122 (330)
T ss_dssp TSSHHHHHHHHHHHHHH-SS-EEEEEETTSTTHHHH-HHHHHHTHHHHHHHHHHTT--SHHHHHHHHHHS--SEEEEESS
T ss_pred ccChHHHHHHHHHHHhhccccccccccccCcccchhhhhhhhhhHHHHHHHHHHhCc-ccccccccccccceEEEEeecc
Confidence 45667899999888886 55333 22 22 345555552 2678888888888889999988
Q ss_pred cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEE
Q 026320 75 SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIM 154 (240)
Q Consensus 75 ti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~Vi 154 (240)
.-+ .++|+++++.|.++++-++- ++.++..+++|||.|+
T Consensus 123 ~p~------~~~i~~l~~~gi~v~~~v~s-----------------------------------~~~A~~a~~~G~D~iv 161 (330)
T PF03060_consen 123 LPP------PEVIERLHAAGIKVIPQVTS-----------------------------------VREARKAAKAGADAIV 161 (330)
T ss_dssp SC-------HHHHHHHHHTT-EEEEEESS-----------------------------------HHHHHHHHHTT-SEEE
T ss_pred cch------HHHHHHHHHcCCccccccCC-----------------------------------HHHHHHhhhcCCCEEE
Confidence 532 35889999999887763322 6778888999999999
Q ss_pred Eecc
Q 026320 155 IDSD 158 (240)
Q Consensus 155 iEar 158 (240)
+|+.
T Consensus 162 ~qG~ 165 (330)
T PF03060_consen 162 AQGP 165 (330)
T ss_dssp EE-T
T ss_pred Eecc
Confidence 9985
No 107
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=92.41 E-value=3 Score=38.52 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=70.9
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCC
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 127 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 127 (240)
..+.++++++.+.|.+.|=|.-.| ..|+.++|.++++.+.+. +=++..=+|+ +
T Consensus 29 ~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv----~------------------- 85 (309)
T cd00952 29 DETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGA----T------------------- 85 (309)
T ss_pred HHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEe----c-------------------
Confidence 378899999999999999875443 489999999999998873 1011001122 0
Q ss_pred CcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc-CCCceEEecC
Q 026320 128 STEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL-GLEKTMFEAT 189 (240)
Q Consensus 128 ~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~-~~~~lifEAP 189 (240)
..++++.+++++..-++|||.|++=.--.+....+---+-..+|++.. ++.=+++-.|
T Consensus 86 ----~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P 144 (309)
T cd00952 86 ----TLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANP 144 (309)
T ss_pred ----cCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCc
Confidence 114688899999999999999999874222211111122233444445 2555555555
No 108
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=92.34 E-value=1.1 Score=40.78 Aligned_cols=65 Identities=18% Similarity=0.182 Sum_probs=45.4
Q ss_pred cccEEEecCc--------cccccChhHHHHHHHHHHhC-CceecC--CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 026320 4 FVDGLKFSGG--------SHSLMPKPFIEEVVKRAHQH-DVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 72 (240)
Q Consensus 4 yID~lKfg~G--------Ts~l~p~~~l~eKi~l~~~~-gV~v~~--Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 72 (240)
|.|++=+-.| .+....++.+.+.++-.++. ++++.- .. +.+...++.+.+.+.|.|.|.|+
T Consensus 118 ~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~--------~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 118 YVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSP--------NVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred ccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCC--------ChhhHHHHHHHHHHcCCCEEEEE
Confidence 4566655444 45667778899999999875 665552 21 11245677888899999999999
Q ss_pred CCcc
Q 026320 73 VGSL 76 (240)
Q Consensus 73 dGti 76 (240)
+++-
T Consensus 190 nt~~ 193 (300)
T TIGR01037 190 NTLR 193 (300)
T ss_pred ccCC
Confidence 7654
No 109
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=92.32 E-value=1.4 Score=44.60 Aligned_cols=142 Identities=11% Similarity=0.119 Sum_probs=93.4
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCCceecCC---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChh
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEE 81 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~G---tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~ 81 (240)
||.+-+....+ +.+.+++-++.+|++|..+... |. +=...++.+-++.+.+.+.|.+.|-|.|-.--+.+.
T Consensus 105 vd~irif~~ln---d~~n~~~~i~~ak~~G~~v~~~i~~t~---~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~ 178 (582)
T TIGR01108 105 MDVFRIFDALN---DPRNLQAAIQAAKKHGAHAQGTISYTT---SPVHTLETYLDLAEELLEMGVDSICIKDMAGILTPK 178 (582)
T ss_pred CCEEEEEEecC---cHHHHHHHHHHHHHcCCEEEEEEEecc---CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHH
Confidence 45554443333 2357888888999888866532 11 001222456666777788999999999999999999
Q ss_pred HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccc
Q 026320 82 TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVC 161 (240)
Q Consensus 82 ~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~ 161 (240)
+-.++|+.+++. +. ..++..+ +. |...-+-.....++|||+.|=.=-.|+=
T Consensus 179 ~v~~lv~~lk~~-~~--~pi~~H~-Hn-------------------------t~Gla~An~laAveaGa~~vd~ai~GlG 229 (582)
T TIGR01108 179 AAYELVSALKKR-FG--LPVHLHS-HA-------------------------TTGMAEMALLKAIEAGADGIDTAISSMS 229 (582)
T ss_pred HHHHHHHHHHHh-CC--CceEEEe-cC-------------------------CCCcHHHHHHHHHHhCCCEEEecccccc
Confidence 999999999874 11 1244432 11 2233366777789999996544335888
Q ss_pred cCCCCccHHHHHHHHhccCC
Q 026320 162 KHADSLRADIIAKVIGRLGL 181 (240)
Q Consensus 162 d~~g~~r~d~v~~i~~~~~~ 181 (240)
...||...+.+-..++..+.
T Consensus 230 ~~tGn~~le~vv~~L~~~g~ 249 (582)
T TIGR01108 230 GGTSHPPTETMVAALRGTGY 249 (582)
T ss_pred ccccChhHHHHHHHHHhcCC
Confidence 88899887776666665553
No 110
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=92.28 E-value=1.7 Score=43.46 Aligned_cols=144 Identities=11% Similarity=0.068 Sum_probs=98.9
Q ss_pred cEEEecCccccccChh-----------HHHHHHHHHHhCCce-ecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 026320 6 DGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVY-VSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 73 (240)
Q Consensus 6 D~lKfg~GTs~l~p~~-----------~l~eKi~l~~~~gV~-v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd 73 (240)
|.+-+-..+|-++-+. .+.+-|+.++++|.. +..|. |.+..-+++.+.++++.+.+.|-+.|-+.|
T Consensus 183 ~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~--EDa~Rtd~efl~~~~~~a~~~Gad~I~l~D 260 (503)
T PLN03228 183 PRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGC--EDGGRSDKEFLCKILGEAIKAGATSVGIAD 260 (503)
T ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecc--ccccccCHHHHHHHHHHHHhcCCCEEEEec
Confidence 3455555565555332 247788899999974 54443 445555556778899999999999999999
Q ss_pred CcccCChhHHHHHHHHHHHcCCcc--cceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCc
Q 026320 74 GSLEIPEETLLRYVRLVKSAGLKA--KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 151 (240)
Q Consensus 74 Gti~l~~~~r~~lI~~~~~~G~~v--~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~ 151 (240)
-.--+.+.+-.++|+.+++. +.. ...+++.+ -.|...-+-..-..++|||+
T Consensus 261 TvG~~tP~~v~~lV~~l~~~-~~~~~~i~I~~H~--------------------------HND~GlAvANslaAi~aGa~ 313 (503)
T PLN03228 261 TVGINMPHEFGELVTYVKAN-TPGIDDIVFSVHC--------------------------HNDLGLATANTIAGICAGAR 313 (503)
T ss_pred CCCCCCHHHHHHHHHHHHHH-hccccCceeEecc--------------------------cCCcChHHHHHHHHHHhCCC
Confidence 99999999999999999873 100 01123321 12334446677778999999
Q ss_pred EEEEeccccccCCCCccHHHHHHHHhc
Q 026320 152 MIMIDSDDVCKHADSLRADIIAKVIGR 178 (240)
Q Consensus 152 ~ViiEargi~d~~g~~r~d~v~~i~~~ 178 (240)
+|=+==-|+=+..||...+.+-..+..
T Consensus 314 ~Vd~Tv~GiGERaGNa~lEevv~~L~~ 340 (503)
T PLN03228 314 QVEVTINGIGERSGNASLEEVVMALKC 340 (503)
T ss_pred EEEEeccccccccCCccHHHHHHHHHh
Confidence 985533488888999888776655543
No 111
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=92.14 E-value=4.9 Score=37.32 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-------------cCChhHHH
Q 026320 21 PFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-------------EIPEETLL 84 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-------------~l~~~~r~ 84 (240)
+.+..--++++.-++++.- .||-+.. .+.+-++...+.|.-.|-|-|++. -+|.++..
T Consensus 62 e~~~~~~~I~~~~~lPv~aD~d~GyG~~~------~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~ 135 (290)
T TIGR02321 62 THLEMMRAIASTVSIPLIADIDTGFGNAV------NVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQ 135 (290)
T ss_pred HHHHHHHHHHhccCCCEEEECCCCCCCcH------HHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHH
Confidence 3444555666777787773 2343221 244556666799999999988752 25888888
Q ss_pred HHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCC
Q 026320 85 RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHA 164 (240)
Q Consensus 85 ~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~ 164 (240)
+-|+.+++. +--++|-+- ..+ |. + |. ....++.|++++...+||||.|.+|+.
T Consensus 136 ~kI~Aa~~a--~~~~d~~I~---ART----Da-~--------~~---~~g~deAI~Ra~aY~eAGAD~ifv~~~------ 188 (290)
T TIGR02321 136 GKIAAATAA--RADRDFVVI---ARV----EA-L--------IA---GLGQQEAVRRGQAYEEAGADAILIHSR------ 188 (290)
T ss_pred HHHHHHHHh--CCCCCEEEE---EEe----cc-c--------cc---cCCHHHHHHHHHHHHHcCCCEEEecCC------
Confidence 888888775 222445442 111 11 0 11 113589999999999999999999972
Q ss_pred CCccHHHHHHHHhccCC-Cce-EEec
Q 026320 165 DSLRADIIAKVIGRLGL-EKT-MFEA 188 (240)
Q Consensus 165 g~~r~d~v~~i~~~~~~-~~l-ifEA 188 (240)
....+.+.++.+.++. -.+ +.+.
T Consensus 189 -~~~~~ei~~~~~~~~~p~pv~~~~~ 213 (290)
T TIGR02321 189 -QKTPDEILAFVKSWPGKVPLVLVPT 213 (290)
T ss_pred -CCCHHHHHHHHHhcCCCCCeEEecC
Confidence 2458889999988873 234 5554
No 112
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=92.13 E-value=2.4 Score=38.35 Aligned_cols=141 Identities=13% Similarity=0.124 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc----ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS----LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 125 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt----i~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 125 (240)
.+.++++++-+.|.+.|=+. || ..|+.++|.++++.+.+. | ..|+ +|+ .
T Consensus 20 ~~~~~i~~l~~~Gv~Gi~~~-GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi--~gv---------~------------ 75 (285)
T TIGR00674 20 ALEKLIDFQIENGTDAIVVV-GTTGESPTLSHEEHKKVIEFVVDLVNGRVPVI--AGT---------G------------ 75 (285)
T ss_pred HHHHHHHHHHHcCCCEEEEC-ccCcccccCCHHHHHHHHHHHHHHhCCCCeEE--EeC---------C------------
Confidence 67888999999999999873 33 589999999999998884 1 1111 122 0
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccCC---C-CccHHHHHHHH
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHA---D-SLRADIIAKVI 176 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~~---g-~~r~d~v~~i~ 176 (240)
..+.++.+++++..-++||+.|++=.- -+|+.- | .+..+++.+++
T Consensus 76 ------~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~ 149 (285)
T TIGR00674 76 ------SNATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRLA 149 (285)
T ss_pred ------CccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHH
Confidence 114688899999999999999998752 135432 3 56677788776
Q ss_pred hccCCCceEE--e-cCCchhHHHHHHHhCCCcccccCCCCchhhhhhhCccCCC
Q 026320 177 GRLGLEKTMF--E-ATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGK 227 (240)
Q Consensus 177 ~~~~~~~lif--E-AP~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G~ 227 (240)
+ .+ +++- + .++......+++++++++.+....+ -+-+++++.|.-|-
T Consensus 150 ~-~~--~v~giK~s~~d~~~~~~l~~~~~~~~~v~~G~d-~~~~~~~~~G~~G~ 199 (285)
T TIGR00674 150 E-EP--NIVAIKEATGNLERISEIKAIAPDDFVVLSGDD-ALTLPMMALGGKGV 199 (285)
T ss_pred c-CC--CEEEEEeCCCCHHHHHHHHHhcCCCeEEEECch-HHHHHHHHcCCCEE
Confidence 3 33 4433 3 3445566667788877776654433 45568888765443
No 113
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=92.09 E-value=0.88 Score=46.28 Aligned_cols=136 Identities=15% Similarity=0.067 Sum_probs=88.2
Q ss_pred cChhHHHHHHHHHHhCCceecC-C---cHHHHH-------HHh----------------CCchHHHHHHHHHHcCCCEEE
Q 026320 18 MPKPFIEEVVKRAHQHDVYVST-G---DWAEHL-------IRN----------------GPSAFKEYVEDCKQVGFDTIE 70 (240)
Q Consensus 18 ~p~~~l~eKi~l~~~~gV~v~~-G---tl~E~a-------~~q----------------g~~~~~~yl~~~k~lGF~~IE 70 (240)
||.+.++.-++++++|||.+.- . +++..+ -.. .++.+.++.+.+.++|.+.|=
T Consensus 93 ~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~ 172 (596)
T PRK14042 93 YADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIA 172 (596)
T ss_pred CChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 5666777777777777774442 2 232221 111 123455556666778999999
Q ss_pred ecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCC
Q 026320 71 LNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 150 (240)
Q Consensus 71 ISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA 150 (240)
|.|-.--+.+.+-.++++.++++ +. -.++... +. |...-+-.....++|||
T Consensus 173 IkDtaG~l~P~~v~~lv~alk~~-~~--ipi~~H~-Hn-------------------------t~Gla~an~laAieaGa 223 (596)
T PRK14042 173 IKDMAGLLTPTVTVELYAGLKQA-TG--LPVHLHS-HS-------------------------TSGLASICHYEAVLAGC 223 (596)
T ss_pred eCCcccCCCHHHHHHHHHHHHhh-cC--CEEEEEe-CC-------------------------CCCcHHHHHHHHHHhCC
Confidence 99999999999999999999874 21 2244432 11 12333566677799999
Q ss_pred cEEEEeccccccCCCCccHHHHHHHHhccCCC
Q 026320 151 DMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 182 (240)
Q Consensus 151 ~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~ 182 (240)
+.|=.=-.|+-...||.-++.+-..++..+.+
T Consensus 224 d~iD~ai~glGg~tGn~~tE~lv~~L~~~g~~ 255 (596)
T PRK14042 224 NHIDTAISSFSGGASHPPTEALVAALTDTPYD 255 (596)
T ss_pred CEEEeccccccCCCCcHhHHHHHHHHHhcCCC
Confidence 96544445887778998888777777666643
No 114
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=92.08 E-value=2 Score=40.11 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----------cCChhHHHHH
Q 026320 21 PFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-----------EIPEETLLRY 86 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-----------~l~~~~r~~l 86 (240)
+.+..--++++..++++.- .||-+.. .+.+.++...+.|.-.|-|-|.+. -+|.++..+-
T Consensus 64 e~~~~~~~I~~~~~lPv~aD~dtGyG~~~------~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~k 137 (294)
T TIGR02319 64 EQAINAKNIVLAVDVPVIMDADAGYGNAM------SVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGK 137 (294)
T ss_pred HHHHHHHHHHhccCCCEEEECCCCCCCcH------HHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHH
Confidence 3444445666777887773 1342211 244556777899999999998764 2688888888
Q ss_pred HHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCC
Q 026320 87 VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADS 166 (240)
Q Consensus 87 I~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~ 166 (240)
|+.+++.-= -++|-+- ..+ |. + . ....++.|+++++..+||||.|.+|+-
T Consensus 138 I~Aa~~A~~--~~d~~I~---ART----Da-~----~--------~~g~deaI~Ra~aY~eAGAD~ifi~~~-------- 187 (294)
T TIGR02319 138 IEAAVEARE--DEDFTII---ART----DA-R----E--------SFGLDEAIRRSREYVAAGADCIFLEAM-------- 187 (294)
T ss_pred HHHHHHhcc--CCCeEEE---EEe----cc-c----c--------cCCHHHHHHHHHHHHHhCCCEEEecCC--------
Confidence 888776411 1445442 111 11 0 0 124789999999999999999999962
Q ss_pred ccHHHHHHHHhccCC
Q 026320 167 LRADIIAKVIGRLGL 181 (240)
Q Consensus 167 ~r~d~v~~i~~~~~~ 181 (240)
...+.+.++.+.++.
T Consensus 188 ~~~~ei~~~~~~~~~ 202 (294)
T TIGR02319 188 LDVEEMKRVRDEIDA 202 (294)
T ss_pred CCHHHHHHHHHhcCC
Confidence 246778888887763
No 115
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=92.08 E-value=1.4 Score=43.56 Aligned_cols=96 Identities=18% Similarity=0.290 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
-++.|++.+.+.|.+.|-|.+..-++. .-.+.|+.+++.|+.|. ..+-. ..+ | .
T Consensus 96 vv~~fv~~A~~~Gvd~irif~~lnd~~--n~~~~i~~ak~~G~~v~--~~i~~---t~~------------p-------~ 149 (467)
T PRK14041 96 VVELFVKKVAEYGLDIIRIFDALNDIR--NLEKSIEVAKKHGAHVQ--GAISY---TVS------------P-------V 149 (467)
T ss_pred hhHHHHHHHHHCCcCEEEEEEeCCHHH--HHHHHHHHHHHCCCEEE--EEEEe---ccC------------C-------C
Confidence 588899999999999999998777753 44568999999998654 33311 111 1 1
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
.+++.+++.+++-.++||+.|- |.|..|-..+..+.+++..+
T Consensus 150 ~t~e~~~~~a~~l~~~Gad~I~-----i~Dt~G~l~P~~v~~Lv~~l 191 (467)
T PRK14041 150 HTLEYYLEFARELVDMGVDSIC-----IKDMAGLLTPKRAYELVKAL 191 (467)
T ss_pred CCHHHHHHHHHHHHHcCCCEEE-----ECCccCCcCHHHHHHHHHHH
Confidence 1578899999999999999764 67888888888887777654
No 116
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=91.99 E-value=1.1 Score=39.88 Aligned_cols=145 Identities=15% Similarity=0.303 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc------cCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSL------EIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 125 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti------~l~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 125 (240)
.+++-++.++++||+.||++-+.. ..+.++..++.+.++++ |+.+.. .+.-. ..-. ..++
T Consensus 11 ~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~-~~~~~-~~~~--~~~~--------- 77 (279)
T cd00019 11 GLENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSV-HAPYL-INLA--SPDK--------- 77 (279)
T ss_pred cHHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEE-EcCce-eccC--CCCH---------
Confidence 788999999999999999975433 12457777777777787 444322 11100 0000 0010
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEecccccc--CCCCccH---HHHHHHHh---ccCCCceEEec---------
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK--HADSLRA---DIIAKVIG---RLGLEKTMFEA--------- 188 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d--~~g~~r~---d~v~~i~~---~~~~~~lifEA--------- 188 (240)
.......+.+.+.++..-+.||..|++-.- .+. ....... +.+.++++ ..|+ +|-+|-
T Consensus 78 ---~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g-~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi-~l~lEn~~~~~~~~~ 152 (279)
T cd00019 78 ---EKREKSIERLKDEIERCEELGIRLLVFHPG-SYLGQSKEEGLKRVIEALNELIDKAETKGV-VIALETMAGQGNEIG 152 (279)
T ss_pred ---HHHHHHHHHHHHHHHHHHHcCCCEEEECCC-CCCCCCHHHHHHHHHHHHHHHHHhccCCCC-EEEEeCCCCCCCCCC
Confidence 011234566666677777889999888432 211 1111112 33444443 2333 566664
Q ss_pred CCchhHHHHHHHhC--CCcccccCCCCch
Q 026320 189 TNPRTSEWFIRRYG--PKVNLFVDHSQVM 215 (240)
Q Consensus 189 P~k~qQ~~~I~~fG--~~VNLgI~~~dVl 215 (240)
+...+-..+|+..| |+|.+-.|+.+..
T Consensus 153 ~t~~~~~~li~~v~~~~~~g~~lD~~h~~ 181 (279)
T cd00019 153 SSFEELKEIIDLIKEKPRVGVCIDTCHIF 181 (279)
T ss_pred CCHHHHHHHHHhcCCCCCeEEEEEhhhHH
Confidence 22345577999997 7776655555543
No 117
>PRK09389 (R)-citramalate synthase; Provisional
Probab=91.93 E-value=1.6 Score=43.24 Aligned_cols=124 Identities=18% Similarity=0.197 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 026320 22 FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 101 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~ 101 (240)
.+.+-++.++++|..+..+ +|-+...+++.+.++++.+.+.|-+.|-+.|-.--+.+.+-.++|+.+++. +. ..+
T Consensus 115 ~~~~~v~~ak~~g~~v~~~--~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~-~~--v~l 189 (488)
T PRK09389 115 TAVEAVEYAKDHGLIVELS--GEDASRADLDFLKELYKAGIEAGADRICFCDTVGILTPEKTYELFKRLSEL-VK--GPV 189 (488)
T ss_pred HHHHHHHHHHHCCCEEEEE--EeeCCCCCHHHHHHHHHHHHhCCCCEEEEecCCCCcCHHHHHHHHHHHHhh-cC--CeE
Confidence 4566678999999865542 133444445567778888899999999999999999999999999999874 22 224
Q ss_pred eeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCccHHHHHHHHhc
Q 026320 102 AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGR 178 (240)
Q Consensus 102 g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~v~~i~~~ 178 (240)
++.+ . .|...-+-.+...++|||++ ||+- |+=+..||...+.+-..+..
T Consensus 190 ~~H~-H-------------------------ND~GlAvANalaAv~aGa~~--Vd~Ti~GiGERaGNa~lE~lv~~L~~ 240 (488)
T PRK09389 190 SIHC-H-------------------------NDFGLAVANTLAALAAGADQ--VHVTINGIGERAGNASLEEVVMALKH 240 (488)
T ss_pred EEEe-c-------------------------CCccHHHHHHHHHHHcCCCE--EEEEcccccccccCccHHHHHHHHHh
Confidence 4432 1 12344467788889999996 6775 88788999888877665543
No 118
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=91.90 E-value=3.5 Score=40.88 Aligned_cols=99 Identities=14% Similarity=0.122 Sum_probs=71.6
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 133 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 133 (240)
+.++.+.+.++|.+.|=|.|-.--+.+.+-.++|+.+++. +...++..+ +.
T Consensus 165 ~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~---~~~pi~~H~-Hn------------------------- 215 (468)
T PRK12581 165 YLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAM---TNLPLIVHT-HA------------------------- 215 (468)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhc---cCCeEEEEe-CC-------------------------
Confidence 5566677788999999999999999999999999999873 123355533 11
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCC
Q 026320 134 DVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL 181 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~ 181 (240)
|....+...-..++|||+.|=.=-.|+-...||..++.+-..++..|.
T Consensus 216 t~GlA~An~laAieAGad~vD~ai~g~g~gagN~~tE~lv~~L~~~g~ 263 (468)
T PRK12581 216 TSGISQMTYLAAVEAGADRIDTALSPFSEGTSQPATESMYLALKEAGY 263 (468)
T ss_pred CCccHHHHHHHHHHcCCCEEEeeccccCCCcCChhHHHHHHHHHhcCC
Confidence 223346677778999999653333478778899888877767665553
No 119
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=91.66 E-value=0.81 Score=42.54 Aligned_cols=119 Identities=24% Similarity=0.401 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhCCceec------CCc-HHHH-HHHhCCchHHHHHHHHHHcCC-CEEEecCCcccCChhHHHHHHHHHHH
Q 026320 22 FIEEVVKRAHQHDVYVS------TGD-WAEH-LIRNGPSAFKEYVEDCKQVGF-DTIELNVGSLEIPEETLLRYVRLVKS 92 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~------~Gt-l~E~-a~~qg~~~~~~yl~~~k~lGF-~~IEISdGti~l~~~~r~~lI~~~~~ 92 (240)
..++.++.+++.++.+. ||. +||. |++-|. ... +++|. |+|=|.|.-+.+-- ...+.|+++++
T Consensus 112 ~T~~~V~~~~~~~~~i~~TRKT~PglR~leKyAV~~GG-G~n------HR~gLsDavliKDNHia~~g-~i~~Av~~aR~ 183 (280)
T COG0157 112 ATARMVEALRGTNVRIADTRKTTPGLRLLEKYAVRAGG-GDN------HRFGLSDAVLIKDNHIAAAG-SITEAVRRARA 183 (280)
T ss_pred HHHHHHHHhhccCcEEEeccCCCccHHHHHHHHHHhcC-Ccc------ccCCCcceEEehhhHHHHhc-cHHHHHHHHHH
Confidence 35677888999998554 574 6774 555441 222 45554 78999999888877 55689999988
Q ss_pred c-CCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHH
Q 026320 93 A-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADI 171 (240)
Q Consensus 93 ~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~ 171 (240)
. ++.++-|+-+. + .+++.+.++||||.||. .|+..+.
T Consensus 184 ~~~~~~kIEVEve-----------------------------s----le~~~eAl~agaDiImL---------DNm~~e~ 221 (280)
T COG0157 184 AAPFTKKIEVEVE-----------------------------S----LEEAEEALEAGADIIML---------DNMSPEE 221 (280)
T ss_pred hCCCCceEEEEcC-----------------------------C----HHHHHHHHHcCCCEEEe---------cCCCHHH
Confidence 6 66666666661 1 67888899999999999 4888999
Q ss_pred HHHHHhccC-CCceEEecCC
Q 026320 172 IAKVIGRLG-LEKTMFEATN 190 (240)
Q Consensus 172 v~~i~~~~~-~~~lifEAP~ 190 (240)
+.+.++.++ ..+++-||.-
T Consensus 222 ~~~av~~l~~~~~~~lEaSG 241 (280)
T COG0157 222 LKEAVKLLGLAGRALLEASG 241 (280)
T ss_pred HHHHHHHhccCCceEEEEeC
Confidence 999988766 6689999983
No 120
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=91.60 E-value=5.8 Score=35.83 Aligned_cols=84 Identities=21% Similarity=0.368 Sum_probs=53.6
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCCc-ee--cC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc---
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YV--ST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--- 77 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV-~v--~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~--- 77 (240)
+..+.|.+|-..+.+ .+.+.++.++++|+ .+ .+ |+++ +++++.+++.|++.|-||=.+.+
T Consensus 57 i~~I~~tGGEPll~~--~l~~iv~~l~~~g~~~v~i~TNG~ll-----------~~~~~~l~~~g~~~v~iSld~~~~~~ 123 (302)
T TIGR02668 57 VRKVKITGGEPLLRK--DLIEIIRRIKDYGIKDVSMTTNGILL-----------EKLAKKLKEAGLDRVNVSLDTLDPEK 123 (302)
T ss_pred CCEEEEECccccccc--CHHHHHHHHHhCCCceEEEEcCchHH-----------HHHHHHHHHCCCCEEEEEecCCCHHH
Confidence 455677777766655 36677887777765 33 34 5443 34555667788888888765542
Q ss_pred -------CChhHHHHHHHHHHHcCCc-cccee
Q 026320 78 -------IPEETLLRYVRLVKSAGLK-AKPKF 101 (240)
Q Consensus 78 -------l~~~~r~~lI~~~~~~G~~-v~~E~ 101 (240)
-+.+...+-|+.+++.|+. ++-.+
T Consensus 124 ~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~ 155 (302)
T TIGR02668 124 YKKITGRGALDRVIEGIESAVDAGLTPVKLNM 155 (302)
T ss_pred hhhccCCCcHHHHHHHHHHHHHcCCCcEEEEE
Confidence 2345667788888888875 44333
No 121
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=91.49 E-value=1.6 Score=37.77 Aligned_cols=97 Identities=15% Similarity=0.210 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCC-hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIP-EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 131 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~-~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 131 (240)
..-++.+..++.|++.+-|.|=+-... ...-..+|+++++.=. +| +-+ +. .
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~--~p-v~~--~G------------g----------- 81 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVG--IP-VQV--GG------------G----------- 81 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcC--CC-EEE--eC------------C-----------
Confidence 455666777789999999997654332 4444678888877310 01 112 00 1
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEe
Q 026320 132 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFE 187 (240)
Q Consensus 132 ~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifE 187 (240)
..+ .+.+++.+++||+.|++=.. ... ..+.+.++++.++.+++++=
T Consensus 82 I~~----~e~~~~~~~~Gad~vvigs~-~l~-----dp~~~~~i~~~~g~~~i~~s 127 (234)
T cd04732 82 IRS----LEDIERLLDLGVSRVIIGTA-AVK-----NPELVKELLKEYGGERIVVG 127 (234)
T ss_pred cCC----HHHHHHHHHcCCCEEEECch-HHh-----ChHHHHHHHHHcCCceEEEE
Confidence 112 56778888899999998433 332 26677777777776666553
No 122
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=91.45 E-value=11 Score=34.22 Aligned_cols=141 Identities=15% Similarity=0.176 Sum_probs=86.7
Q ss_pred HHHHHHHhC--CceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 026320 25 EVVKRAHQH--DVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 101 (240)
Q Consensus 25 eKi~l~~~~--gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~ 101 (240)
+-++-.+++ ++++. - ++..-.+.. .+++|++.|++.|.+.|=|=| +|.++..++++.++++|+.+.+=+
T Consensus 76 ~~v~~ir~~~~~~plv-~m~Y~Npi~~~---G~e~f~~~~~~aGvdgviipD----lp~ee~~~~~~~~~~~gl~~i~lv 147 (256)
T TIGR00262 76 ELLKKVRQKHPNIPIG-LLTYYNLIFRK---GVEEFYAKCKEVGVDGVLVAD----LPLEESGDLVEAAKKHGVKPIFLV 147 (256)
T ss_pred HHHHHHHhcCCCCCEE-EEEeccHHhhh---hHHHHHHHHHHcCCCEEEECC----CChHHHHHHHHHHHHCCCcEEEEE
Confidence 334444433 55544 3 555666666 489999999999999988874 677888999999999988765422
Q ss_pred eeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHH---HHHhc
Q 026320 102 AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIA---KVIGR 178 (240)
Q Consensus 102 g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~---~i~~~ 178 (240)
.- . ++.++++.+.+. ..|--++|. ..|++.....+..++.+ ++-+.
T Consensus 148 ~P---~--------------------------T~~eri~~i~~~-~~gfiy~vs-~~G~TG~~~~~~~~~~~~i~~lr~~ 196 (256)
T TIGR00262 148 AP---N--------------------------ADDERLKQIAEK-SQGFVYLVS-RAGVTGARNRAASALNELVKRLKAY 196 (256)
T ss_pred CC---C--------------------------CCHHHHHHHHHh-CCCCEEEEE-CCCCCCCcccCChhHHHHHHHHHhh
Confidence 22 0 123444444442 344555554 23666655455555333 33222
Q ss_pred cCCCceEEecCCc-hhHHHHHHHhCCCc
Q 026320 179 LGLEKTMFEATNP-RTSEWFIRRYGPKV 205 (240)
Q Consensus 179 ~~~~~lifEAP~k-~qQ~~~I~~fG~~V 205 (240)
.+ ..++.+-=-+ ..|..-+..+|.|.
T Consensus 197 ~~-~pi~vgfGI~~~e~~~~~~~~GADg 223 (256)
T TIGR00262 197 SA-KPVLVGFGISKPEQVKQAIDAGADG 223 (256)
T ss_pred cC-CCEEEeCCCCCHHHHHHHHHcCCCE
Confidence 22 2466666554 66777788888873
No 123
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.44 E-value=2.5 Score=37.35 Aligned_cols=100 Identities=13% Similarity=0.116 Sum_probs=67.3
Q ss_pred cccccChhHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHH
Q 026320 14 SHSLMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVK 91 (240)
Q Consensus 14 Ts~l~p~~~l~eKi~l~~~~gV~v~~G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~ 91 (240)
...++++..-.+-++.++++||.+.|| |.-|+.-.. ++|++.|-+==...-= -..+|+.++
T Consensus 77 A~FivSP~~~~~vi~~a~~~~i~~iPG~~TptEi~~A~-------------~~Ga~~vK~FPa~~~G----G~~yikal~ 139 (201)
T PRK06015 77 SRFIVSPGTTQELLAAANDSDVPLLPGAATPSEVMALR-------------EEGYTVLKFFPAEQAG----GAAFLKALS 139 (201)
T ss_pred CCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHH-------------HCCCCEEEECCchhhC----CHHHHHHHH
Confidence 344555567888999999999999998 789987554 6899999885422110 135677665
Q ss_pred HcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccC
Q 026320 92 SAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH 163 (240)
Q Consensus 92 ~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~ 163 (240)
. ++|.+-.. +...| + .+.+...|+||+..+.. +.-++++
T Consensus 140 ~----plp~~~l~-ptGGV-----------------------~----~~n~~~~l~ag~~~~~g-gs~l~~~ 178 (201)
T PRK06015 140 S----PLAGTFFC-PTGGI-----------------------S----LKNARDYLSLPNVVCVG-GSWVAPK 178 (201)
T ss_pred h----hCCCCcEE-ecCCC-----------------------C----HHHHHHHHhCCCeEEEE-chhhCCc
Confidence 5 45544332 11111 1 46888999999998877 7767654
No 124
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=91.29 E-value=2.1 Score=43.34 Aligned_cols=96 Identities=18% Similarity=0.258 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
-++.+++.+.+.|++.|-|.+-.-++ +.-.+.|+.++++|+.|. +.+-... +|.
T Consensus 92 vv~~~v~~a~~~Gvd~irif~~lnd~--~n~~~~i~~ak~~G~~v~--~~i~~t~---------------~p~------- 145 (582)
T TIGR01108 92 VVERFVKKAVENGMDVFRIFDALNDP--RNLQAAIQAAKKHGAHAQ--GTISYTT---------------SPV------- 145 (582)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcH--HHHHHHHHHHHHcCCEEE--EEEEecc---------------CCC-------
Confidence 47889999999999999998777665 445678999999998654 4441100 111
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
-|++.+++.+++..++||+.| .|+|..|-..+..+.++++.+
T Consensus 146 ~~~~~~~~~~~~~~~~Gad~I-----~i~Dt~G~~~P~~v~~lv~~l 187 (582)
T TIGR01108 146 HTLETYLDLAEELLEMGVDSI-----CIKDMAGILTPKAAYELVSAL 187 (582)
T ss_pred CCHHHHHHHHHHHHHcCCCEE-----EECCCCCCcCHHHHHHHHHHH
Confidence 158999999999999999976 468999999999888888655
No 125
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=91.19 E-value=1.5 Score=38.93 Aligned_cols=43 Identities=16% Similarity=0.316 Sum_probs=31.8
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhc
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGR 178 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~ 178 (240)
.+.++++.+....+++||+.|++ ||.||.++.. ...+.+|.+.
T Consensus 184 ~~dq~~~~~~~~ai~~Gad~iVv-GR~I~~a~dP--~~~a~~i~~~ 226 (230)
T PRK00230 184 AGDQKRVMTPAQAIAAGSDYIVV-GRPITQAADP--AAAYEAILAE 226 (230)
T ss_pred cchHHHHhCHHHHHHcCCCEEEE-CCcccCCCCH--HHHHHHHHHH
Confidence 35688888999999999998866 8999988764 3345555443
No 126
>PLN02417 dihydrodipicolinate synthase
Probab=91.14 E-value=0.69 Score=42.06 Aligned_cols=78 Identities=10% Similarity=0.075 Sum_probs=58.6
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccC
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 125 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 125 (240)
+.+.++++++-+.|.+.|=+.-.| ..|+.++|.++++.+.+. | +.++ .|+ +
T Consensus 22 ~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi--~gv-------~-------------- 78 (280)
T PLN02417 22 EAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVI--GNT-------G-------------- 78 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEE--EEC-------C--------------
Confidence 368889999999999999875443 489999999999998773 1 1111 122 0
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
..++.+.++.+++.-++|||.||+-.-
T Consensus 79 ------~~~t~~~i~~a~~a~~~Gadav~~~~P 105 (280)
T PLN02417 79 ------SNSTREAIHATEQGFAVGMHAALHINP 105 (280)
T ss_pred ------CccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 114688899999999999999999764
No 127
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=91.00 E-value=1.8 Score=40.88 Aligned_cols=95 Identities=21% Similarity=0.239 Sum_probs=69.5
Q ss_pred HHHHHHHHHHcCCCEEEecCCccc--------CChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSLE--------IPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 121 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti~--------l~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~ 121 (240)
..+-++.+.+.|.+.|-+...+-+ .+.++ -.+.|+.+++.|++| +|+..+. .
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v--~~~~ed~---------~----- 137 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFV--SVGGEDA---------S----- 137 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEE--EEeecCC---------C-----
Confidence 356688899999999998876532 22222 337899999999874 3444221 0
Q ss_pred cccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 122 VARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 122 ~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
..|++.+++.++...++||+.| .++|..|-..+..+.++++.+
T Consensus 138 ----------r~~~~~l~~~~~~~~~~Ga~~i-----~l~DT~G~~~P~~v~~lv~~l 180 (365)
T TIGR02660 138 ----------RADPDFLVELAEVAAEAGADRF-----RFADTVGILDPFSTYELVRAL 180 (365)
T ss_pred ----------CCCHHHHHHHHHHHHHcCcCEE-----EEcccCCCCCHHHHHHHHHHH
Confidence 1258899999999999999976 478999999998888887654
No 128
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=91.00 E-value=1.4 Score=41.86 Aligned_cols=83 Identities=17% Similarity=0.250 Sum_probs=60.6
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHH
Q 026320 59 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 138 (240)
Q Consensus 59 ~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~ 138 (240)
+.+++-|.++|-|-+|+ ..+...|+.+.++|.-|.-.+|..-. .+..++.+-..- .-.+...++
T Consensus 121 rl~~eaGa~aVKlEGg~-----~~~~~~I~~l~~~GIPV~gHiGLtPQ-------s~~~lGGykvqG----r~~~~a~~l 184 (332)
T PLN02424 121 RMLKEGGMDAVKLEGGS-----PSRVTAAKAIVEAGIAVMGHVGLTPQ-------AISVLGGFRPQG----RTAESAVKV 184 (332)
T ss_pred HHHHHhCCcEEEECCCc-----HHHHHHHHHHHHcCCCEEEeecccce-------eehhhcCccccC----CCHHHHHHH
Confidence 34467899999999997 56789999999999999999998532 111121111000 001236789
Q ss_pred HHHHHHHHHcCCcEEEEec
Q 026320 139 IRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 139 i~~~~~dLeAGA~~ViiEa 157 (240)
++.++.--+|||+.|.+|+
T Consensus 185 i~dA~ale~AGAf~ivLE~ 203 (332)
T PLN02424 185 VETALALQEAGCFAVVLEC 203 (332)
T ss_pred HHHHHHHHHcCCcEEEEcC
Confidence 9999999999999999998
No 129
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=91.00 E-value=1.3 Score=39.74 Aligned_cols=66 Identities=9% Similarity=0.066 Sum_probs=43.8
Q ss_pred ccEEEecCccc-------cccChhHHHHHHHHHHhC-CceecC--CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC
Q 026320 5 VDGLKFSGGSH-------SLMPKPFIEEVVKRAHQH-DVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG 74 (240)
Q Consensus 5 ID~lKfg~GTs-------~l~p~~~l~eKi~l~~~~-gV~v~~--Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdG 74 (240)
+|++=+-++|- .+..++.+.+.++-.|+. ++++.- ++.. ..+.+.+..+.+.+.|.|.|.++++
T Consensus 125 ~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~------~~~~~~~~a~~l~~~Gad~i~~~~~ 198 (289)
T cd02810 125 AKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF------DLEDIVELAKAAERAGADGLTAINT 198 (289)
T ss_pred CCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC------CHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 56666655543 244567788999988886 544432 2211 1125777888899999999999987
Q ss_pred cc
Q 026320 75 SL 76 (240)
Q Consensus 75 ti 76 (240)
+.
T Consensus 199 ~~ 200 (289)
T cd02810 199 IS 200 (289)
T ss_pred cC
Confidence 64
No 130
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=90.95 E-value=4.3 Score=41.33 Aligned_cols=126 Identities=10% Similarity=0.081 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHhCCcee-----cCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCC
Q 026320 21 PFIEEVVKRAHQHDVYV-----STGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 95 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~v-----~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~ 95 (240)
+.++.-|+.++++|..+ |+++- + ..++.+.++.+.+.+.|.+.|=|.|-.--+.+.+-.++|+.+++. +
T Consensus 124 ~~~~~ai~~ak~~G~~~~~~i~yt~~p-~----~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~-~ 197 (593)
T PRK14040 124 RNLETALKAVRKVGAHAQGTLSYTTSP-V----HTLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKR-V 197 (593)
T ss_pred HHHHHHHHHHHHcCCeEEEEEEEeeCC-c----cCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHh-c
Confidence 45666777777777642 22211 1 112356677777888899999999999989999888999998874 1
Q ss_pred cccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHH
Q 026320 96 KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKV 175 (240)
Q Consensus 96 ~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i 175 (240)
. -.+++.. + .|....+......++|||+.|=.=-.|+=...||...+.+-..
T Consensus 198 ~--~pi~~H~-H-------------------------nt~GlA~An~laAieAGa~~vD~ai~glG~~~Gn~~le~vv~~ 249 (593)
T PRK14040 198 D--VPLHLHC-H-------------------------ATTGLSTATLLKAIEAGIDGVDTAISSMSMTYGHSATETLVAT 249 (593)
T ss_pred C--CeEEEEE-C-------------------------CCCchHHHHHHHHHHcCCCEEEeccccccccccchhHHHHHHH
Confidence 1 2344432 1 1234446777788999999654433488778899888877666
Q ss_pred HhccC
Q 026320 176 IGRLG 180 (240)
Q Consensus 176 ~~~~~ 180 (240)
+...+
T Consensus 250 L~~~~ 254 (593)
T PRK14040 250 LEGTE 254 (593)
T ss_pred HHhcC
Confidence 66544
No 131
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=90.90 E-value=2.2 Score=42.31 Aligned_cols=97 Identities=16% Similarity=0.209 Sum_probs=74.0
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 131 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 131 (240)
+-++.|++.+.+.|++.+-|-|..-+++.- ...|+.+++.|..+..=+.... +|.
T Consensus 105 dvv~~fv~~a~~~Gidi~Rifd~lnd~~n~--~~ai~~ak~~G~~~~~~i~yt~-----------------sp~------ 159 (468)
T PRK12581 105 DIVDKFISLSAQNGIDVFRIFDALNDPRNI--QQALRAVKKTGKEAQLCIAYTT-----------------SPV------ 159 (468)
T ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCHHHH--HHHHHHHHHcCCEEEEEEEEEe-----------------CCc------
Confidence 468889999999999999999977755444 4699999999987653222211 111
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 132 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 132 ~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
-|.+-+++.++.-.++||+.|- |.|..|-..+..+.++++.+
T Consensus 160 -~t~~y~~~~a~~l~~~Gad~I~-----IkDtaG~l~P~~v~~Lv~al 201 (468)
T PRK12581 160 -HTLNYYLSLVKELVEMGADSIC-----IKDMAGILTPKAAKELVSGI 201 (468)
T ss_pred -CcHHHHHHHHHHHHHcCCCEEE-----ECCCCCCcCHHHHHHHHHHH
Confidence 1578889999999999999775 57888888888888888665
No 132
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=90.88 E-value=2.3 Score=38.22 Aligned_cols=94 Identities=24% Similarity=0.347 Sum_probs=67.4
Q ss_pred HHHHHHHHHcC----CCEEEecCCcc--------cCCh----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccc
Q 026320 55 KEYVEDCKQVG----FDTIELNVGSL--------EIPE----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF 118 (240)
Q Consensus 55 ~~yl~~~k~lG----F~~IEISdGti--------~l~~----~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~ 118 (240)
.+.++.+.+.| ++.|-+....- ..+. +.-.+.|+.+++.|++|. |+..+..
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~~~~~----------- 138 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE--FSAEDAT----------- 138 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE--EeeecCC-----------
Confidence 44566666677 99999977542 2222 334578899999998754 4442210
Q ss_pred ccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 119 GAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
..+++.+.+.+++..++|++.| .+.|..|...++.+.++++.+
T Consensus 139 -------------~~~~~~~~~~~~~~~~~G~~~i-----~l~DT~G~~~P~~v~~lv~~l 181 (268)
T cd07940 139 -------------RTDLDFLIEVVEAAIEAGATTI-----NIPDTVGYLTPEEFGELIKKL 181 (268)
T ss_pred -------------CCCHHHHHHHHHHHHHcCCCEE-----EECCCCCCCCHHHHHHHHHHH
Confidence 1158899999999999999876 478999999999999888644
No 133
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=90.72 E-value=2.3 Score=36.91 Aligned_cols=126 Identities=13% Similarity=0.131 Sum_probs=76.0
Q ss_pred ChhHHHHHHHHHHhCCceecC-CcH--HHHHHH-----------hCCc--h-----HHHHHHHHHHcCCCEEEecCCccc
Q 026320 19 PKPFIEEVVKRAHQHDVYVST-GDW--AEHLIR-----------NGPS--A-----FKEYVEDCKQVGFDTIELNVGSLE 77 (240)
Q Consensus 19 p~~~l~eKi~l~~~~gV~v~~-Gtl--~E~a~~-----------qg~~--~-----~~~yl~~~k~lGF~~IEISdGti~ 77 (240)
+...+.+-...|.++|+.... +++ ++.+-. ++-+ . ..+.++.|.+.|-+.|.+......
T Consensus 25 ~~~~i~~~a~~~~~~G~~~~~~~~~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~ 104 (219)
T cd04729 25 SPEIMAAMALAAVQGGAVGIRANGVEDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRP 104 (219)
T ss_pred cHHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCC
Confidence 334567777788889986653 443 443322 1100 1 123789999999999988655444
Q ss_pred CCh-hHHHHHHHHHHHcC-CcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEE
Q 026320 78 IPE-ETLLRYVRLVKSAG-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 155 (240)
Q Consensus 78 l~~-~~r~~lI~~~~~~G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~Vii 155 (240)
.|. ++-.++++.+++.| +.+.. ++ .+++ .+++..++|+++|.+
T Consensus 105 ~p~~~~~~~~i~~~~~~g~~~iiv--~v-----------------------------~t~~----ea~~a~~~G~d~i~~ 149 (219)
T cd04729 105 RPDGETLAELIKRIHEEYNCLLMA--DI-----------------------------STLE----EALNAAKLGFDIIGT 149 (219)
T ss_pred CCCCcCHHHHHHHHHHHhCCeEEE--EC-----------------------------CCHH----HHHHHHHcCCCEEEc
Confidence 455 36668999999987 43332 11 0233 346677899999998
Q ss_pred eccccccCC---CCccHHHHHHHHhcc
Q 026320 156 DSDDVCKHA---DSLRADIIAKVIGRL 179 (240)
Q Consensus 156 Eargi~d~~---g~~r~d~v~~i~~~~ 179 (240)
..+|.+... .....+.+.++.+.+
T Consensus 150 ~~~g~t~~~~~~~~~~~~~l~~i~~~~ 176 (219)
T cd04729 150 TLSGYTEETAKTEDPDFELLKELRKAL 176 (219)
T ss_pred cCccccccccCCCCCCHHHHHHHHHhc
Confidence 877654321 122335566665544
No 134
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=90.72 E-value=1.9 Score=41.32 Aligned_cols=94 Identities=13% Similarity=0.132 Sum_probs=58.6
Q ss_pred HHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh----hHHHHHHHHHHHcCCccc
Q 026320 23 IEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE----ETLLRYVRLVKSAGLKAK 98 (240)
Q Consensus 23 l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~----~~r~~lI~~~~~~G~~v~ 98 (240)
+.+.|+-.++++|.+..+. ++....++.+.+.+.|.+.|.|+-.|.+-.+ ..+..+++..++.+..|+
T Consensus 120 ~~~iv~~~~~~~V~v~vr~--------~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVI 191 (368)
T PRK08649 120 ITERIAEIRDAGVIVAVSL--------SPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVI 191 (368)
T ss_pred HHHHHHHHHhCeEEEEEec--------CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEE
Confidence 3444455555555543332 3346789999999999999999766554221 145667777776554432
Q ss_pred ceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccc
Q 026320 99 PKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD 159 (240)
Q Consensus 99 ~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarg 159 (240)
- |. +. + .+.+++.+++|||-|++ ++|
T Consensus 192 a--G~------V~----------------------t----~e~A~~l~~aGAD~V~V-G~G 217 (368)
T PRK08649 192 V--GG------CV----------------------T----YTTALHLMRTGAAGVLV-GIG 217 (368)
T ss_pred E--eC------CC----------------------C----HHHHHHHHHcCCCEEEE-CCC
Confidence 1 11 10 2 45677778899999999 663
No 135
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=90.66 E-value=2.5 Score=41.85 Aligned_cols=125 Identities=14% Similarity=0.121 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcc--cc
Q 026320 22 FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA--KP 99 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v--~~ 99 (240)
.+.+-+++++++|..+..+ .|.+..-+++.+.++++.+.+.|-+.|-+.|-.--+.+.+-.++|+.++++ +.- ..
T Consensus 118 ~~~~~v~~a~~~g~~v~f~--~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~-~~~~~~v 194 (494)
T TIGR00973 118 RAVGMVKYAKNFTDDVEFS--CEDAGRTEIPFLARIVEAAINAGATTINIPDTVGYALPAEYGNLIKGLREN-VPNIDKA 194 (494)
T ss_pred HHHHHHHHHHHcCCeEEEE--cCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHHHh-hccccCc
Confidence 4558889999999876654 334444555678888999999999999999999999999999999999874 110 11
Q ss_pred eeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCccHHHHHHHHh
Q 026320 100 KFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG 177 (240)
Q Consensus 100 E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~v~~i~~ 177 (240)
.+++.+ -.|....+-.....++|||++ ||+- |+=+..||...+.+-..+.
T Consensus 195 ~l~~H~--------------------------HND~GlAvANalaAv~aGa~~--vd~tv~GlGERaGNa~le~vv~~L~ 246 (494)
T TIGR00973 195 ILSVHC--------------------------HNDLGLAVANSLAAVQNGARQ--VECTINGIGERAGNAALEEVVMALK 246 (494)
T ss_pred eEEEEe--------------------------CCCCChHHHHHHHHHHhCCCE--EEEEeecccccccCccHHHHHHHHH
Confidence 244432 223344577788889999995 5775 7778889988776665553
No 136
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=90.53 E-value=3 Score=42.37 Aligned_cols=140 Identities=13% Similarity=0.130 Sum_probs=93.0
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCC---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE 80 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~G---tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~ 80 (240)
-||.+.+....+-+ +.+++-++.++++|..+... |+-- ...++.+-++.+.+.+.|.+.|=|.|-.--+.+
T Consensus 109 Gvd~irif~~lnd~---~n~~~~i~~ak~~G~~v~~~i~~t~~p---~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P 182 (592)
T PRK09282 109 GIDIFRIFDALNDV---RNMEVAIKAAKKAGAHVQGTISYTTSP---VHTIEKYVELAKELEEMGCDSICIKDMAGLLTP 182 (592)
T ss_pred CCCEEEEEEecChH---HHHHHHHHHHHHcCCEEEEEEEeccCC---CCCHHHHHHHHHHHHHcCCCEEEECCcCCCcCH
Confidence 35666665544443 46888888888888866421 1100 122345666677778899999999999999999
Q ss_pred hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--
Q 026320 81 ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-- 158 (240)
Q Consensus 81 ~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-- 158 (240)
.+-.++++.+++. +. ..++... +. |...-+......++|||++ |++-
T Consensus 183 ~~~~~lv~~lk~~-~~--~pi~~H~-Hn-------------------------t~Gla~An~laAv~aGad~--vD~ai~ 231 (592)
T PRK09282 183 YAAYELVKALKEE-VD--LPVQLHS-HC-------------------------TSGLAPMTYLKAVEAGVDI--IDTAIS 231 (592)
T ss_pred HHHHHHHHHHHHh-CC--CeEEEEE-cC-------------------------CCCcHHHHHHHHHHhCCCE--EEeecc
Confidence 9999999999874 22 1244432 11 1233366777789999996 5554
Q ss_pred ccccCCCCccHHHHHHHHhccC
Q 026320 159 DVCKHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 159 gi~d~~g~~r~d~v~~i~~~~~ 180 (240)
|+-...||...+.+-..++..+
T Consensus 232 g~g~~agn~~~e~vv~~L~~~g 253 (592)
T PRK09282 232 PLAFGTSQPPTESMVAALKGTP 253 (592)
T ss_pred ccCCCcCCHhHHHHHHHHHhCC
Confidence 7777888888776666665544
No 137
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=90.31 E-value=6.8 Score=37.30 Aligned_cols=85 Identities=18% Similarity=0.316 Sum_probs=48.1
Q ss_pred cEEEecCccccccChhHHHHHHHHHHhC-Cce---ecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc---
Q 026320 6 DGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVY---VST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--- 77 (240)
Q Consensus 6 D~lKfg~GTs~l~p~~~l~eKi~l~~~~-gV~---v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~--- 77 (240)
..+.|.+|--.+.| .+.+.++.+++. |+. +.| |++ +++.++..++.|.+.|-||=.+++
T Consensus 108 ~~I~~tGGEPllr~--dl~eli~~l~~~~gi~~i~itTNG~l-----------L~~~~~~L~~aGld~VnISLDsl~~e~ 174 (373)
T PLN02951 108 DKIRLTGGEPTLRK--DIEDICLQLSSLKGLKTLAMTTNGIT-----------LSRKLPRLKEAGLTSLNISLDTLVPAK 174 (373)
T ss_pred CEEEEECCCCcchh--hHHHHHHHHHhcCCCceEEEeeCcch-----------HHHHHHHHHhCCCCeEEEeeccCCHHH
Confidence 44556666655544 355666666654 432 223 433 233455667788888888855431
Q ss_pred -------CChhHHHHHHHHHHHcCCc-ccceeee
Q 026320 78 -------IPEETLLRYVRLVKSAGLK-AKPKFAV 103 (240)
Q Consensus 78 -------l~~~~r~~lI~~~~~~G~~-v~~E~g~ 103 (240)
-+.+..++.|+.+++.|+. ++-.+.+
T Consensus 175 ~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv 208 (373)
T PLN02951 175 FEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVV 208 (373)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 1225566778888888873 4444433
No 138
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=90.25 E-value=2.9 Score=38.26 Aligned_cols=138 Identities=18% Similarity=0.177 Sum_probs=84.3
Q ss_pred CCcccEEEecCccccccChhHHHHHHHHHHhCCce--ecCC---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC-Cc
Q 026320 2 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY--VSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV-GS 75 (240)
Q Consensus 2 g~yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~--v~~G---tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd-Gt 75 (240)
.+|+|++|+|-+...=++ .|++ +-+.|.+ +..| |.-|.. .-++++++-|-+-|=+=. |+
T Consensus 96 ~e~vdilqIgs~~~~n~~--LL~~----va~tgkPVilk~G~~~t~~e~~---------~A~e~i~~~Gn~~i~L~eRg~ 160 (250)
T PRK13397 96 YDYLDVIQVGARNMQNFE--FLKT----LSHIDKPILFKRGLMATIEEYL---------GALSYLQDTGKSNIILCERGV 160 (250)
T ss_pred HhcCCEEEECcccccCHH--HHHH----HHccCCeEEEeCCCCCCHHHHH---------HHHHHHHHcCCCeEEEEcccc
Confidence 468999999866554433 3333 2234554 4457 333332 223344566765555555 76
Q ss_pred ccCChhHH----HHHHHHHHH-cCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCC
Q 026320 76 LEIPEETL----LRYVRLVKS-AGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 150 (240)
Q Consensus 76 i~l~~~~r----~~lI~~~~~-~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA 150 (240)
-.-|...| ++.|..+++ .++.|+ + ++....| . .+.+...++..+.+||
T Consensus 161 ~~Y~~~~~n~~dl~ai~~lk~~~~lPVi----v-d~SHs~G---~-------------------r~~v~~~a~AAvA~GA 213 (250)
T PRK13397 161 RGYDVETRNMLDIMAVPIIQQKTDLPII----V-DVSHSTG---R-------------------RDLLLPAAKIAKAVGA 213 (250)
T ss_pred CCCCCccccccCHHHHHHHHHHhCCCeE----E-CCCCCCc---c-------------------cchHHHHHHHHHHhCC
Confidence 66665544 466666766 232211 1 0111121 1 2444677888899999
Q ss_pred cEEEEecc-----ccccCCCCccHHHHHHHHhccCC
Q 026320 151 DMIMIDSD-----DVCKHADSLRADIIAKVIGRLGL 181 (240)
Q Consensus 151 ~~ViiEar-----gi~d~~g~~r~d~v~~i~~~~~~ 181 (240)
+-+|||-- -.+|..-.+..+.++++++++..
T Consensus 214 dGl~IE~H~~P~~A~sD~~q~l~~~~l~~l~~~~~~ 249 (250)
T PRK13397 214 NGIMMEVHPDPDHALSDAAQQIDYKQLEQLGQELWQ 249 (250)
T ss_pred CEEEEEecCCcccccCchhhhCCHHHHHHHHHHhcc
Confidence 99999983 78999999999999999987754
No 139
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=90.20 E-value=3.1 Score=37.86 Aligned_cols=56 Identities=20% Similarity=0.117 Sum_probs=41.4
Q ss_pred ccccccChhHHHHHHHHHHhC-CceecC--C-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc
Q 026320 13 GSHSLMPKPFIEEVVKRAHQH-DVYVST--G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE 77 (240)
Q Consensus 13 GTs~l~p~~~l~eKi~l~~~~-gV~v~~--G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~ 77 (240)
|......++.+.+-++-.+++ ++++.- . +. +.+.++.+.+.+.|.|.|.++|.+..
T Consensus 135 g~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~---------~~~~~~a~~l~~~G~d~i~~~nt~~g 194 (301)
T PRK07259 135 GMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNV---------TDIVEIAKAAEEAGADGLSLINTLKG 194 (301)
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCc---------hhHHHHHHHHHHcCCCEEEEEccccc
Confidence 566677788899999999987 665553 2 22 24667788899999999999876543
No 140
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=90.17 E-value=6.8 Score=36.28 Aligned_cols=112 Identities=27% Similarity=0.387 Sum_probs=69.4
Q ss_pred cEEEecCccccccChhHHHHHHHHHHhCCceec--C-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-----
Q 026320 6 DGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--T-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE----- 77 (240)
Q Consensus 6 D~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~--~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~----- 77 (240)
..+-|++|--.+.| .+.+.++.++++|+.+. | |+++ -++.++.+++.|++.|-||=...+
T Consensus 55 ~~v~~~GGEPll~~--~~~~ii~~~~~~g~~~~l~TNG~ll----------~~e~~~~L~~~g~~~v~iSldg~~~e~~d 122 (358)
T TIGR02109 55 LQLHFSGGEPLARP--DLVELVAHARRLGLYTNLITSGVGL----------TEARLDALADAGLDHVQLSFQGVDEALAD 122 (358)
T ss_pred cEEEEeCccccccc--cHHHHHHHHHHcCCeEEEEeCCccC----------CHHHHHHHHhCCCCEEEEeCcCCCHHHHH
Confidence 34667778887766 47788888888887443 4 6542 145667778889999998855442
Q ss_pred ----C--ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCc
Q 026320 78 ----I--PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 151 (240)
Q Consensus 78 ----l--~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~ 151 (240)
. +.+.-.+.|+.+++.|+.+.--+.+. + .+.+++-+.++-..+-|++
T Consensus 123 ~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv~--------~-------------------~N~~~l~~~~~~~~~lg~~ 175 (358)
T TIGR02109 123 RIAGYKNAFEQKLAMARAVKAAGLPLTLNFVIH--------R-------------------HNIDQIPEIIELAIELGAD 175 (358)
T ss_pred HhcCCccHHHHHHHHHHHHHhCCCceEEEEEec--------c-------------------CCHHHHHHHHHHHHHcCCC
Confidence 1 12233566778888877643222221 1 1244555555555677999
Q ss_pred EEEEe
Q 026320 152 MIMID 156 (240)
Q Consensus 152 ~ViiE 156 (240)
.+-+.
T Consensus 176 ~i~~~ 180 (358)
T TIGR02109 176 RVELA 180 (358)
T ss_pred EEEEE
Confidence 87664
No 141
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=90.04 E-value=9.1 Score=35.21 Aligned_cols=115 Identities=24% Similarity=0.298 Sum_probs=68.8
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHh-CCc-e--ecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc--
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQ-HDV-Y--VST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-- 77 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~-~gV-~--v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~-- 77 (240)
|.-+.|.+|-..+.+ .+.+.++.+++ .|+ . +.| |+++ +++++..++.|.+.|-||=.+.+
T Consensus 60 v~~V~ltGGEPll~~--~l~~li~~i~~~~gi~~v~itTNG~ll-----------~~~~~~L~~~gl~~v~ISld~~~~~ 126 (334)
T TIGR02666 60 VRKVRLTGGEPLLRK--DLVELVARLAALPGIEDIALTTNGLLL-----------ARHAKDLKEAGLKRVNVSLDSLDPE 126 (334)
T ss_pred CCEEEEECccccccC--CHHHHHHHHHhcCCCCeEEEEeCchhH-----------HHHHHHHHHcCCCeEEEecccCCHH
Confidence 445666667666554 35666665555 344 2 223 4433 34567778889998888855432
Q ss_pred ---------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHH
Q 026320 78 ---------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLE 147 (240)
Q Consensus 78 ---------l~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLe 147 (240)
-+.+...+.|+.+++.|+. ++--+-+..+. +.+++.+.++-..+
T Consensus 127 ~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~--------------------------n~~ei~~l~~~~~~ 180 (334)
T TIGR02666 127 RFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGV--------------------------NDDEIVDLAEFAKE 180 (334)
T ss_pred HhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCC--------------------------CHHHHHHHHHHHHh
Confidence 2456777888888888886 44433331100 23455555666668
Q ss_pred cCCcEEEEecc
Q 026320 148 AGADMIMIDSD 158 (240)
Q Consensus 148 AGA~~ViiEar 158 (240)
.|+..-.+|--
T Consensus 181 ~gv~~~~ie~m 191 (334)
T TIGR02666 181 RGVTLRFIELM 191 (334)
T ss_pred cCCeEEEEecc
Confidence 88887777654
No 142
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=90.02 E-value=2.4 Score=36.54 Aligned_cols=96 Identities=20% Similarity=0.215 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHhCCceecC--CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHc---CC
Q 026320 21 PFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA---GL 95 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~v~~--Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~---G~ 95 (240)
+.+++-++.++.+|+.+.. -||-| ++.+.++|++.|=++.-+......+ .++++++++. +.
T Consensus 108 ~~~~~~~~~~~~~g~~~~v~v~~~~e-------------~~~~~~~g~~~i~~t~~~~~~~~~~-~~~~~~l~~~~~~~~ 173 (217)
T cd00331 108 EQLKELYELARELGMEVLVEVHDEEE-------------LERALALGAKIIGINNRDLKTFEVD-LNTTERLAPLIPKDV 173 (217)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCHHH-------------HHHHHHcCCCEEEEeCCCccccCcC-HHHHHHHHHhCCCCC
Confidence 5566666666666665432 24544 3444556777775552221111111 2444555442 44
Q ss_pred cccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCC
Q 026320 96 KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHA 164 (240)
Q Consensus 96 ~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~ 164 (240)
.+..+.|+. + .+.+++.+++||+-|++=+ .||+..
T Consensus 174 pvia~gGI~-----------------------------s----~edi~~~~~~Ga~gvivGs-ai~~~~ 208 (217)
T cd00331 174 ILVSESGIS-----------------------------T----PEDVKRLAEAGADAVLIGE-SLMRAP 208 (217)
T ss_pred EEEEEcCCC-----------------------------C----HHHHHHHHHcCCCEEEECH-HHcCCC
Confidence 555555552 2 4566777889999999843 355543
No 143
>PLN02321 2-isopropylmalate synthase
Probab=90.02 E-value=3.4 Score=42.43 Aligned_cols=126 Identities=13% Similarity=0.115 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcc--c
Q 026320 22 FIEEVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA--K 98 (240)
Q Consensus 22 ~l~eKi~l~~~~gV-~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v--~ 98 (240)
.+++-+++++++|. .+..+ .|.+..-+++.+.++++.+.+.|.+.|=+.|-.--+.+.+-.++|+.++++ +.. .
T Consensus 211 ~~~~~V~~Ak~~G~~~v~fs--~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~-~~~~~~ 287 (632)
T PLN02321 211 IARDMVKYARSLGCEDVEFS--PEDAGRSDPEFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKAN-TPGIEN 287 (632)
T ss_pred HHHHHHHHHHHcCCceEEEe--cccCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHh-cCCCCC
Confidence 36678889999986 34443 334445556688899999999999999999999999999999999999874 110 1
Q ss_pred ceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCccHHHHHHHH
Q 026320 99 PKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVI 176 (240)
Q Consensus 99 ~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~v~~i~ 176 (240)
..+++.+ -.|....+-.....++|||+.| |+- |+=+..||...+.+-..+
T Consensus 288 v~i~vH~--------------------------HND~GlAvANslaAv~AGA~~V--d~TinGlGERaGNa~LEevv~~L 339 (632)
T PLN02321 288 VIISTHC--------------------------QNDLGLSTANTLAGAHAGARQV--EVTINGIGERAGNASLEEVVMAI 339 (632)
T ss_pred ceEEEEe--------------------------CCCCCHHHHHHHHHHHhCCCEE--EEecccccccccCccHHHHHHHH
Confidence 1234432 2234555777778899999984 775 777889999988777666
Q ss_pred hc
Q 026320 177 GR 178 (240)
Q Consensus 177 ~~ 178 (240)
..
T Consensus 340 ~~ 341 (632)
T PLN02321 340 KC 341 (632)
T ss_pred Hh
Confidence 54
No 144
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=89.94 E-value=1.7 Score=39.29 Aligned_cols=74 Identities=31% Similarity=0.384 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYV 122 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti---------~l~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 122 (240)
.+.++.+.+++.|||+|||+=++- --+.+.-.++++.+++. + +| +.+|-.
T Consensus 103 ~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~---~P-v~vKl~---------------- 162 (296)
T cd04740 103 EFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATD---VP-VIVKLT---------------- 162 (296)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccC---CC-EEEEeC----------------
Confidence 455666677788999999975432 22345556788888875 2 22 444421
Q ss_pred ccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEe
Q 026320 123 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMID 156 (240)
Q Consensus 123 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiE 156 (240)
| +.++..+.++...++||+.|.+=
T Consensus 163 -~---------~~~~~~~~a~~~~~~G~d~i~~~ 186 (296)
T cd04740 163 -P---------NVTDIVEIARAAEEAGADGLTLI 186 (296)
T ss_pred -C---------CchhHHHHHHHHHHcCCCEEEEE
Confidence 0 12355677778889999988763
No 145
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=89.87 E-value=0.65 Score=42.41 Aligned_cols=107 Identities=21% Similarity=0.307 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHhC---Cc----eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC----------hhH
Q 026320 20 KPFIEEVVKRAHQH---DV----YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP----------EET 82 (240)
Q Consensus 20 ~~~l~eKi~l~~~~---gV----~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~----------~~~ 82 (240)
...+.+.++-.++. ++ +++++.+.+--+.. +...++++.+.+.|.++|+||.|+..-+ ...
T Consensus 191 ~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~--~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~ 268 (327)
T cd02803 191 ARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTL--EEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGY 268 (327)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCH--HHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcch
Confidence 34566777766663 33 33443322111111 1456677888899999999999986432 234
Q ss_pred HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHc-CCcEEEEeccccc
Q 026320 83 LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA-GADMIMIDSDDVC 161 (240)
Q Consensus 83 r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeA-GA~~ViiEargi~ 161 (240)
..++++.+++. +++ +..-.| .. .+ .+.+++.|++ |||.|.+ +|.++
T Consensus 269 ~~~~~~~ir~~-------~~i--PVi~~G--------gi-----------~t----~~~a~~~l~~g~aD~V~i-gR~~l 315 (327)
T cd02803 269 FLELAEKIKKA-------VKI--PVIAVG--------GI-----------RD----PEVAEEILAEGKADLVAL-GRALL 315 (327)
T ss_pred hHHHHHHHHHH-------CCC--CEEEeC--------CC-----------CC----HHHHHHHHHCCCCCeeee-cHHHH
Confidence 45667777663 211 111011 11 12 4556777888 7999998 67654
No 146
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=89.83 E-value=3 Score=36.07 Aligned_cols=64 Identities=23% Similarity=0.403 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
..+++++.|++.|.+.|.++++ .+ .++++.+++.++.+. .+. .
T Consensus 68 ~~~~~~~~~~~~g~d~v~l~~~---~~----~~~~~~~~~~~i~~i----~~v-----------------~--------- 110 (236)
T cd04730 68 DFEALLEVALEEGVPVVSFSFG---PP----AEVVERLKAAGIKVI----PTV-----------------T--------- 110 (236)
T ss_pred CHHHHHHHHHhCCCCEEEEcCC---CC----HHHHHHHHHcCCEEE----EeC-----------------C---------
Confidence 6888999999999999999988 22 346667776654432 210 0
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
+ .+++++..++||++|++.+.
T Consensus 111 -~----~~~~~~~~~~gad~i~~~~~ 131 (236)
T cd04730 111 -S----VEEARKAEAAGADALVAQGA 131 (236)
T ss_pred -C----HHHHHHHHHcCCCEEEEeCc
Confidence 1 24455667799999999886
No 147
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=89.77 E-value=2.2 Score=39.29 Aligned_cols=114 Identities=20% Similarity=0.218 Sum_probs=69.7
Q ss_pred cCccccccChhHHHHHHHHHHhC-CceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc--CChhHHH
Q 026320 11 SGGSHSLMPKPFIEEVVKRAHQH-DVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--IPEETLL 84 (240)
Q Consensus 11 g~GTs~l~p~~~l~eKi~l~~~~-gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~--l~~~~r~ 84 (240)
|+|+..+-.++.+.+-++-.++. ++++.. ++|-+ +.....++.+.+.+.|.+.|-|+..+.. .+..-..
T Consensus 107 ~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~-----~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~ 181 (319)
T TIGR00737 107 GAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDD-----AHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANW 181 (319)
T ss_pred CccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCC-----CcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhH
Confidence 45666677778888888888763 444432 34432 2124678889999999999999865432 2222335
Q ss_pred HHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHH-HcCCcEEEEecccccc
Q 026320 85 RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCL-EAGADMIMIDSDDVCK 162 (240)
Q Consensus 85 ~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dL-eAGA~~ViiEargi~d 162 (240)
++++.+++. +++ +.--. ++ ..| .+.+.+.| +.|||.||+ ||+++.
T Consensus 182 ~~i~~i~~~-------~~i--pvi~n---Gg----------------I~~----~~da~~~l~~~gad~Vmi-gR~~l~ 227 (319)
T TIGR00737 182 DIIARVKQA-------VRI--PVIGN---GD----------------IFS----PEDAKAMLETTGCDGVMI-GRGALG 227 (319)
T ss_pred HHHHHHHHc-------CCC--cEEEe---CC----------------CCC----HHHHHHHHHhhCCCEEEE-Chhhhh
Confidence 788888773 221 11000 11 113 34455556 579999999 887764
No 148
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=89.74 E-value=3 Score=42.55 Aligned_cols=97 Identities=15% Similarity=0.202 Sum_probs=76.0
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 131 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 131 (240)
+-++.|++.+.+.|.|.+-|-|..-+++.-.. .|+.+++.|..+..-+-.. . ++
T Consensus 96 ~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~--~i~~~k~~G~~~~~~i~yt--~-------sp--------------- 149 (596)
T PRK14042 96 DVVRAFVKLAVNNGVDVFRVFDALNDARNLKV--AIDAIKSHKKHAQGAICYT--T-------SP--------------- 149 (596)
T ss_pred HHHHHHHHHHHHcCCCEEEEcccCcchHHHHH--HHHHHHHcCCEEEEEEEec--C-------CC---------------
Confidence 46888999999999999999998888887765 8999999998665432221 0 11
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 132 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 132 ~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
.-|++.+++.++.-.++||+.|- |.|..|-..+..+.+++..+
T Consensus 150 ~~t~e~~~~~ak~l~~~Gad~I~-----IkDtaG~l~P~~v~~lv~al 192 (596)
T PRK14042 150 VHTLDNFLELGKKLAEMGCDSIA-----IKDMAGLLTPTVTVELYAGL 192 (596)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEE-----eCCcccCCCHHHHHHHHHHH
Confidence 11589999999999999998764 67888888888888777654
No 149
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=89.62 E-value=3.8 Score=39.03 Aligned_cols=123 Identities=13% Similarity=0.182 Sum_probs=79.4
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc------
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL------ 76 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti------ 76 (240)
-|+-+=||+||..+++.+.|++-++.++++= +..+. .|+.+.-+|+. -++.++.++++||+.|.|---|.
T Consensus 73 ~i~siy~GGGTPs~L~~~~L~~ll~~i~~~~-~~~~~--~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~ 149 (394)
T PRK08898 73 QVHTVFIGGGTPSLLSAAGLDRLLSDVRALL-PLDPD--AEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLK 149 (394)
T ss_pred ceeEEEECCCCcCCCCHHHHHHHHHHHHHhC-CCCCC--CeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHH
Confidence 3667779999999999999999999998751 11111 13333333322 25789999999999988754443
Q ss_pred ----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcE
Q 026320 77 ----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 152 (240)
Q Consensus 77 ----~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ 152 (240)
.-+.++-.+.|+.+++.+..|- +....+. |. ++.+.+.+.++..++.+.++
T Consensus 150 ~l~R~~~~~~~~~~i~~~~~~~~~v~--~dlI~Gl----------------Pg-------qt~~~~~~~l~~~~~l~p~~ 204 (394)
T PRK08898 150 ALGRIHDGAEARAAIEIAAKHFDNFN--LDLMYAL----------------PG-------QTLDEALADVETALAFGPPH 204 (394)
T ss_pred HhCCCCCHHHHHHHHHHHHHhCCceE--EEEEcCC----------------CC-------CCHHHHHHHHHHHHhcCCCE
Confidence 1233455567777777533221 2222221 11 25788888899999999987
Q ss_pred EE
Q 026320 153 IM 154 (240)
Q Consensus 153 Vi 154 (240)
|-
T Consensus 205 is 206 (394)
T PRK08898 205 LS 206 (394)
T ss_pred EE
Confidence 63
No 150
>PRK12999 pyruvate carboxylase; Reviewed
Probab=89.61 E-value=3.2 Score=45.26 Aligned_cols=102 Identities=20% Similarity=0.267 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
.+++|++.+.+.|.+.+-|.|..-++ +.....|+.+++.|..+...++.. .++ -|+ .. ..
T Consensus 628 v~~~~i~~a~~~Gid~~rifd~lnd~--~~~~~~i~~vk~~g~~~~~~i~yt---g~~---~d~--------~~----~~ 687 (1146)
T PRK12999 628 VVRAFVREAAAAGIDVFRIFDSLNWV--ENMRVAIDAVRETGKIAEAAICYT---GDI---LDP--------AR----AK 687 (1146)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCChH--HHHHHHHHHHHHcCCeEEEEEEEE---ecC---CCC--------CC----CC
Confidence 57889999999999999999988886 446678999999988655555542 111 121 11 01
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
-|++.+++.++.-.++||+.|- |.|..|-+.+..+.++++.+
T Consensus 688 ~~~~~~~~~a~~l~~~Ga~~i~-----ikDt~G~l~P~~~~~lv~~l 729 (1146)
T PRK12999 688 YDLDYYVDLAKELEKAGAHILA-----IKDMAGLLKPAAAYELVSAL 729 (1146)
T ss_pred CCHHHHHHHHHHHHHcCCCEEE-----ECCccCCCCHHHHHHHHHHH
Confidence 2689999999999999999664 67888888888887777654
No 151
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=89.56 E-value=2.5 Score=42.41 Aligned_cols=131 Identities=22% Similarity=0.275 Sum_probs=86.2
Q ss_pred CCcccEE--EecCccccccChhHHHHHHHHHHhCC-ceecC--C-cHHHHHHH---------------hCCch-HHHHHH
Q 026320 2 GQFVDGL--KFSGGSHSLMPKPFIEEVVKRAHQHD-VYVST--G-DWAEHLIR---------------NGPSA-FKEYVE 59 (240)
Q Consensus 2 g~yID~l--Kfg~GTs~l~p~~~l~eKi~l~~~~g-V~v~~--G-tl~E~a~~---------------qg~~~-~~~yl~ 59 (240)
|+.+|=+ =|.+||+.-+|.+.++.-++.++++= -+... + .-+|-+.. -.|+. -++.++
T Consensus 131 g~~~~kvE~i~~GGTft~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~~e~L~ 210 (522)
T TIGR01211 131 GHPVDKVELIIMGGTFPARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCREEHID 210 (522)
T ss_pred CCCCceEEEEEECCCcccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCCHHHHH
Confidence 5555522 38999999999999999999998761 11111 1 00222221 12333 478999
Q ss_pred HHHHcCCCEEEecCCcc----------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 026320 60 DCKQVGFDTIELNVGSL----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 129 (240)
Q Consensus 60 ~~k~lGF~~IEISdGti----------~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 129 (240)
.++++|++.||+--=|. --+.++-.+.++.++++||++...+ ..++ +.
T Consensus 211 ~L~~~G~~rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~~L--M~GL----Pg---------------- 268 (522)
T TIGR01211 211 RMLKLGATRVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVYHI--MPGL----PG---------------- 268 (522)
T ss_pred HHHHcCCCEEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEEEe--ecCC----CC----------------
Confidence 99999999999865544 2455666788999999999755433 3222 01
Q ss_pred ccccCHHHHHHHHHHHHH---cCCcEEEEec
Q 026320 130 EYVEDVDLLIRRAERCLE---AGADMIMIDS 157 (240)
Q Consensus 130 ~~~~~~~~~i~~~~~dLe---AGA~~ViiEa 157 (240)
+|++..++.++..++ .+.+.|-+-.
T Consensus 269 ---qt~e~~~~t~~~l~~~~~l~pD~Ikiyp 296 (522)
T TIGR01211 269 ---SSFERDLEMFREIFEDPRFKPDMLKIYP 296 (522)
T ss_pred ---CCHHHHHHHHHHHHhccCCCcCEEEEec
Confidence 146777888877764 7899887665
No 152
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=89.47 E-value=1.2 Score=36.52 Aligned_cols=148 Identities=18% Similarity=0.240 Sum_probs=84.2
Q ss_pred HHHHHHcCCCEEEecCCcccCCh---hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccC
Q 026320 58 VEDCKQVGFDTIELNVGSLEIPE---ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 134 (240)
Q Consensus 58 l~~~k~lGF~~IEISdGti~l~~---~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 134 (240)
|+.++++||+.||++-....... ++..++.+.+++.|+++..--...+.........++ -.. ....
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~----------~~~-r~~~ 69 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSA----------NDE-REEA 69 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTS----------SSH-HHHH
T ss_pred ChHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCc----------chh-hHHH
Confidence 57899999999999987765554 577789999999999965533332211100000000 000 1112
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeccc--cccCCCC--cc---H---HHHHHHHhccCCCceEEecCC------c---hhHH
Q 026320 135 VDLLIRRAERCLEAGADMIMIDSDD--VCKHADS--LR---A---DIIAKVIGRLGLEKTMFEATN------P---RTSE 195 (240)
Q Consensus 135 ~~~~i~~~~~dLeAGA~~ViiEarg--i~d~~g~--~r---~---d~v~~i~~~~~~~~lifEAP~------k---~qQ~ 195 (240)
.+.+.+.++..=..|+..|++-+-. ....... .. . ..+.+++++.|+ ++.+|--. . .+..
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~i~lE~~~~~~~~~~~~~~~~~ 148 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGV-RIALENHPGPFSETPFSVEEIY 148 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTS-EEEEE-SSSSSSSEESSHHHHH
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcc-eEEEecccCccccchhhHHHHH
Confidence 4555555555567799999998541 1111110 00 1 122233334453 47777432 2 5678
Q ss_pred HHHHHhC-CCcccccCCCCchhh
Q 026320 196 WFIRRYG-PKVNLFVDHSQVMDL 217 (240)
Q Consensus 196 ~~I~~fG-~~VNLgI~~~dVl~L 217 (240)
++++.++ |+|++.++..+...-
T Consensus 149 ~~l~~~~~~~~~i~~D~~h~~~~ 171 (213)
T PF01261_consen 149 RLLEEVDSPNVGICFDTGHLIMA 171 (213)
T ss_dssp HHHHHHTTTTEEEEEEHHHHHHT
T ss_pred HHHhhcCCCcceEEEehHHHHHc
Confidence 9999999 667776776665543
No 153
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=89.43 E-value=5 Score=38.20 Aligned_cols=94 Identities=24% Similarity=0.387 Sum_probs=68.6
Q ss_pred HHHHHHHHHcCCCEEEecCCcccC--------Ch----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 026320 55 KEYVEDCKQVGFDTIELNVGSLEI--------PE----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 122 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGti~l--------~~----~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 122 (240)
.+-++.+.+.|++.|-|+..+-++ +. +.-.+.|+.+++.|+.| .|+-.+..
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v--~~~~ed~~--------------- 140 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYV--SFSAEDAS--------------- 140 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE--EEEeccCC---------------
Confidence 566888999999999998765443 22 33345888999999874 33432100
Q ss_pred ccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 123 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 123 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
..|++.+++.++...++||+.|. ++|..|-..+..+.+++..+
T Consensus 141 ---------r~~~~~l~~~~~~~~~~Ga~~I~-----l~DT~G~~~P~~v~~lv~~l 183 (378)
T PRK11858 141 ---------RTDLDFLIEFAKAAEEAGADRVR-----FCDTVGILDPFTMYELVKEL 183 (378)
T ss_pred ---------CCCHHHHHHHHHHHHhCCCCEEE-----EeccCCCCCHHHHHHHHHHH
Confidence 12589999999999999999864 67888999988888877654
No 154
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=89.38 E-value=2.1 Score=36.77 Aligned_cols=76 Identities=14% Similarity=0.265 Sum_probs=50.8
Q ss_pred cCccccccChhHHHHHHHHHHhC-CceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC--ChhHHH
Q 026320 11 SGGSHSLMPKPFIEEVVKRAHQH-DVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI--PEETLL 84 (240)
Q Consensus 11 g~GTs~l~p~~~l~eKi~l~~~~-gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l--~~~~r~ 84 (240)
++|++.+-..+.+.+.++-.++. ++.+.- .+|-+. ....++++.+.+.|++.|.|+.++... ...-..
T Consensus 99 ~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~------~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~ 172 (231)
T cd02801 99 GAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDE------EETLELAKALEDAGASALTVHGRTREQRYSGPADW 172 (231)
T ss_pred CeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCc------hHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCH
Confidence 36677777888899999988864 222222 234221 267788899999999999999987532 212234
Q ss_pred HHHHHHHH
Q 026320 85 RYVRLVKS 92 (240)
Q Consensus 85 ~lI~~~~~ 92 (240)
+.++.+++
T Consensus 173 ~~~~~i~~ 180 (231)
T cd02801 173 DYIAEIKE 180 (231)
T ss_pred HHHHHHHh
Confidence 66777766
No 155
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=89.10 E-value=2.6 Score=39.29 Aligned_cols=117 Identities=19% Similarity=0.307 Sum_probs=78.2
Q ss_pred HHHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-----------ccCChhHHHHHHHHHHHc
Q 026320 28 KRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-----------LEIPEETLLRYVRLVKSA 93 (240)
Q Consensus 28 ~l~~~~gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-----------i~l~~~~r~~lI~~~~~~ 93 (240)
++++.-+|++.- .||-+ +..+.+.++...+.|.-+|-|=|.. --+|.++..+-|+.+++.
T Consensus 72 ~I~~~~~iPviaD~d~GyG~------~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a 145 (292)
T PRK11320 72 RITDACDLPLLVDIDTGFGG------AFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDA 145 (292)
T ss_pred HHHhccCCCEEEECCCCCCC------HHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHh
Confidence 344555676663 23432 2356667788889999999998854 236999988888888774
Q ss_pred CCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHH
Q 026320 94 GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIA 173 (240)
Q Consensus 94 G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~ 173 (240)
-- -++|-+- ..+ |. + + ....++.|+++++..+||||.|.+|+- -..+.+.
T Consensus 146 ~~--~~d~~Ii---ART----Da-~--------~----~~g~deAI~Ra~aY~eAGAD~ifi~~~--------~~~~~i~ 195 (292)
T PRK11320 146 RT--DPDFVIM---ART----DA-L--------A----VEGLDAAIERAQAYVEAGADMIFPEAM--------TELEMYR 195 (292)
T ss_pred cc--CCCeEEE---Eec----Cc-c--------c----ccCHHHHHHHHHHHHHcCCCEEEecCC--------CCHHHHH
Confidence 21 1344441 111 11 0 0 124789999999999999999999973 1367777
Q ss_pred HHHhccC
Q 026320 174 KVIGRLG 180 (240)
Q Consensus 174 ~i~~~~~ 180 (240)
++.+.++
T Consensus 196 ~~~~~~~ 202 (292)
T PRK11320 196 RFADAVK 202 (292)
T ss_pred HHHHhcC
Confidence 7877665
No 156
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=88.84 E-value=2.8 Score=36.36 Aligned_cols=97 Identities=23% Similarity=0.333 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHh-CCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC-CcccC---ChhHHHHHHHHHHHc-C
Q 026320 21 PFIEEVVKRAHQ-HDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV-GSLEI---PEETLLRYVRLVKSA-G 94 (240)
Q Consensus 21 ~~l~eKi~l~~~-~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd-Gti~l---~~~~r~~lI~~~~~~-G 94 (240)
+.+.+.++.+|+ .++.+.++. ...++ ...+.+.|+++|-++. |.... .......+++.+++. +
T Consensus 105 ~~~~~~i~~~~~~~~i~vi~~v----------~t~ee-~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~ 173 (221)
T PRK01130 105 ETLAELVKRIKEYPGQLLMADC----------STLEE-GLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVG 173 (221)
T ss_pred CCHHHHHHHHHhCCCCeEEEeC----------CCHHH-HHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCC
Confidence 346666666666 666655432 01222 2456788999887743 22111 111224566666654 4
Q ss_pred CcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecccccc
Q 026320 95 LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK 162 (240)
Q Consensus 95 ~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d 162 (240)
..+....|++ + .+.+++.+++||+-|++=+ .+++
T Consensus 174 iPvia~GGI~-----------------------------t----~~~~~~~l~~GadgV~iGs-ai~~ 207 (221)
T PRK01130 174 CPVIAEGRIN-----------------------------T----PEQAKKALELGAHAVVVGG-AITR 207 (221)
T ss_pred CCEEEECCCC-----------------------------C----HHHHHHHHHCCCCEEEEch-HhcC
Confidence 5555555552 2 3566777899999999853 3554
No 157
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=88.72 E-value=15 Score=32.60 Aligned_cols=117 Identities=14% Similarity=0.100 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
..++|++.|++.|.+.|=|=|=.++- .++-.++++.++++|+++..++.-..
T Consensus 89 ~~~~~i~~~~~~Gadgvii~dlp~e~-~~~~~~~~~~~~~~Gl~~~~~v~p~T--------------------------- 140 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPDLLIDY-PDDLEKYVEIIKNKGLKPVFFTSPKF--------------------------- 140 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCCc-HHHHHHHHHHHHHcCCCEEEEECCCC---------------------------
Confidence 68899999999999999884322221 35667899999999999888776621
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecc-ccccCCCCccHHHHHHHH---hccCCCceEEecCC-chhHHHHHHHhCCCc
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSD-DVCKHADSLRADIIAKVI---GRLGLEKTMFEATN-PRTSEWFIRRYGPKV 205 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEar-gi~d~~g~~r~d~v~~i~---~~~~~~~lifEAP~-k~qQ~~~I~~fG~~V 205 (240)
+ .++++.-++.....+++ +. +.+. +.+.+++.+.+- +..+-..++.+.=- ...+...+...|.|.
T Consensus 141 --~---~e~l~~~~~~~~~~l~m-sv~~~~g--~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~ 210 (244)
T PRK13125 141 --P---DLLIHRLSKLSPLFIYY-GLRPATG--VPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADG 210 (244)
T ss_pred --C---HHHHHHHHHhCCCEEEE-EeCCCCC--CCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCE
Confidence 1 34444555666666655 53 3442 245555444432 22221235556554 446677777777663
No 158
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=88.69 E-value=3.4 Score=37.08 Aligned_cols=79 Identities=22% Similarity=0.330 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC--------ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEI--------PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 124 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l--------~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~ 124 (240)
.+.++.+.+.+.|+++|||+-++-.. ..+.-.++++.+++. . -+| +.+|-..
T Consensus 112 ~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~-~-~~p-v~vKl~~----------------- 171 (289)
T cd02810 112 DYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAA-V-DIP-LLVKLSP----------------- 171 (289)
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHc-c-CCC-EEEEeCC-----------------
Confidence 55666777788899999998765332 234456778888773 1 011 4554321
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 125 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 125 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
. .+.++..+.++...++||+.|.+-.+
T Consensus 172 ~-------~~~~~~~~~a~~l~~~Gad~i~~~~~ 198 (289)
T cd02810 172 Y-------FDLEDIVELAKAAERAGADGLTAINT 198 (289)
T ss_pred C-------CCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 0 13567888899999999999999765
No 159
>PRK04302 triosephosphate isomerase; Provisional
Probab=88.67 E-value=4.8 Score=35.25 Aligned_cols=116 Identities=11% Similarity=0.099 Sum_probs=72.6
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 133 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 133 (240)
-+.+.+.++++|.++|-+-+.--.++.++-.++++.+++.|+.++.+++-
T Consensus 74 g~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~~v~~------------------------------ 123 (223)
T PRK04302 74 GHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVVCVNN------------------------------ 123 (223)
T ss_pred hhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEEEcCC------------------------------
Confidence 34568999999999999988766688888889999999999988742221
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccccc---CCCCccHHHHHHHHhccC----CCceEEecC-CchhHHHHHHHhCCC
Q 026320 134 DVDLLIRRAERCLEAGADMIMIDSDDVCK---HADSLRADIIAKVIGRLG----LEKTMFEAT-NPRTSEWFIRRYGPK 204 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiEargi~d---~~g~~r~d~v~~i~~~~~----~~~lifEAP-~k~qQ~~~I~~fG~~ 204 (240)
.+++++-.+.|.+.|=+|.++... .......+.++++++.+. --.++-+.- +...+...+...|.+
T Consensus 124 -----~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gad 197 (223)
T PRK04302 124 -----PETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGAD 197 (223)
T ss_pred -----HHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCC
Confidence 123334456789999999875321 111123444554443332 124555554 244455555555554
No 160
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=88.51 E-value=9.5 Score=33.98 Aligned_cols=52 Identities=17% Similarity=0.360 Sum_probs=41.0
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 026320 41 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 99 (240)
Q Consensus 41 tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~ 99 (240)
+.+...+.. .++.|++.|++.|.+.|=+-| +|.++..++++.++++|+++..
T Consensus 83 ~y~n~~~~~---G~~~fi~~~~~aG~~giiipD----l~~ee~~~~~~~~~~~g~~~i~ 134 (242)
T cd04724 83 GYYNPILQY---GLERFLRDAKEAGVDGLIIPD----LPPEEAEEFREAAKEYGLDLIF 134 (242)
T ss_pred EecCHHHHh---CHHHHHHHHHHCCCcEEEECC----CCHHHHHHHHHHHHHcCCcEEE
Confidence 344444444 389999999999999998864 5778888999999999887655
No 161
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=88.35 E-value=2 Score=38.03 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=71.7
Q ss_pred HHHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 026320 25 EVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 103 (240)
Q Consensus 25 eKi~l~~~~gV-~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~ 103 (240)
+-++...+++| .+.-|.=.| ..-+..+.+.+.|+++|||. +......+.|+.+++.. |++-+
T Consensus 7 ~~~~~l~~~~~iaV~r~~~~~--------~a~~i~~al~~~Gi~~iEit-----l~~~~~~~~I~~l~~~~----p~~~I 69 (212)
T PRK05718 7 SIEEILRAGPVVPVIVINKLE--------DAVPLAKALVAGGLPVLEVT-----LRTPAALEAIRLIAKEV----PEALI 69 (212)
T ss_pred HHHHHHHHCCEEEEEEcCCHH--------HHHHHHHHHHHcCCCEEEEe-----cCCccHHHHHHHHHHHC----CCCEE
Confidence 34456677887 444453333 33455678889999999998 55567889999998731 22222
Q ss_pred ecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--cc---ccC------CCCccHHHH
Q 026320 104 MFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DV---CKH------ADSLRADII 172 (240)
Q Consensus 104 k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi---~d~------~g~~r~d~v 172 (240)
|+ |.-+ + .++++..++|||++++.=+= ++ +.+ =|-....++
T Consensus 70 -------GA------GTVl-----------~----~~~a~~a~~aGA~FivsP~~~~~vi~~a~~~~i~~iPG~~TptEi 121 (212)
T PRK05718 70 -------GA------GTVL-----------N----PEQLAQAIEAGAQFIVSPGLTPPLLKAAQEGPIPLIPGVSTPSEL 121 (212)
T ss_pred -------EE------eecc-----------C----HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHH
Confidence 20 1111 2 38899999999999997662 11 111 155556666
Q ss_pred HHHHhccCCCceEE
Q 026320 173 AKVIGRLGLEKTMF 186 (240)
Q Consensus 173 ~~i~~~~~~~~lif 186 (240)
.+. .+.|.+-+-+
T Consensus 122 ~~a-~~~Ga~~vKl 134 (212)
T PRK05718 122 MLG-MELGLRTFKF 134 (212)
T ss_pred HHH-HHCCCCEEEE
Confidence 554 3577666655
No 162
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=88.31 E-value=6.8 Score=36.70 Aligned_cols=110 Identities=28% Similarity=0.359 Sum_probs=59.3
Q ss_pred EEecCccccccChhHHHHHHHHHHhCCcee--cC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-------
Q 026320 8 LKFSGGSHSLMPKPFIEEVVKRAHQHDVYV--ST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE------- 77 (240)
Q Consensus 8 lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v--~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~------- 77 (240)
+-|.+|--.+.| .+.+.++.+++.|+.+ .| |+++ -++.++..++.|++.|.||=...+
T Consensus 66 v~~~GGEPll~~--~~~~il~~~~~~g~~~~i~TNG~ll----------~~~~~~~L~~~g~~~v~iSldg~~~e~~d~i 133 (378)
T PRK05301 66 LHFSGGEPLLRK--DLEELVAHARELGLYTNLITSGVGL----------TEARLAALKDAGLDHIQLSFQDSDPELNDRL 133 (378)
T ss_pred EEEECCccCCch--hHHHHHHHHHHcCCcEEEECCCccC----------CHHHHHHHHHcCCCEEEEEecCCCHHHHHHH
Confidence 445556655554 3556666666666532 23 4331 123445556677777777744331
Q ss_pred --C--ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEE
Q 026320 78 --I--PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 153 (240)
Q Consensus 78 --l--~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~V 153 (240)
. +.+...+.|+.+++.|++|..-+.+. ..+.+++.+.++-..+.|++.|
T Consensus 134 rg~~g~f~~~~~~i~~l~~~g~~v~i~~vv~---------------------------~~N~~~i~~~~~~~~~lgv~~i 186 (378)
T PRK05301 134 AGTKGAFAKKLAVARLVKAHGYPLTLNAVIH---------------------------RHNIDQIPRIIELAVELGADRL 186 (378)
T ss_pred cCCCchHHHHHHHHHHHHHCCCceEEEEEee---------------------------cCCHHHHHHHHHHHHHcCCCEE
Confidence 1 23444556677777776543322221 0134555555666667899988
Q ss_pred EEe
Q 026320 154 MID 156 (240)
Q Consensus 154 iiE 156 (240)
.+-
T Consensus 187 ~~~ 189 (378)
T PRK05301 187 ELA 189 (378)
T ss_pred EEe
Confidence 764
No 163
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=88.20 E-value=16 Score=31.46 Aligned_cols=110 Identities=16% Similarity=0.180 Sum_probs=69.2
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCH
Q 026320 56 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 135 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~ 135 (240)
..++.|.+.|.+.|=+..- .++.++-.++++.++..|+.+..++.-
T Consensus 85 ~~v~~~~~~Gad~v~l~~~--~~~~~~~~~~~~~~~~~g~~~~v~v~~-------------------------------- 130 (217)
T cd00331 85 YQIYEARAAGADAVLLIVA--ALDDEQLKELYELARELGMEVLVEVHD-------------------------------- 130 (217)
T ss_pred HHHHHHHHcCCCEEEEeec--cCCHHHHHHHHHHHHHcCCeEEEEECC--------------------------------
Confidence 3799999999999998443 456677778999998877777544421
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCC-CceEEecCCch-hHHHHHHHhCCC
Q 026320 136 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL-EKTMFEATNPR-TSEWFIRRYGPK 204 (240)
Q Consensus 136 ~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~-~~lifEAP~k~-qQ~~~I~~fG~~ 204 (240)
.+++++.+++|++++.+=++.... -....+.+.++.+.++. -.++-+.=-.. .+..-+...|.+
T Consensus 131 ---~~e~~~~~~~g~~~i~~t~~~~~~--~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~ 196 (217)
T cd00331 131 ---EEELERALALGAKIIGINNRDLKT--FEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGAD 196 (217)
T ss_pred ---HHHHHHHHHcCCCEEEEeCCCccc--cCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCC
Confidence 234677788999999876542211 12234666777665542 24444544322 455555555654
No 164
>PLN02591 tryptophan synthase
Probab=88.20 E-value=1.5 Score=39.76 Aligned_cols=62 Identities=8% Similarity=0.149 Sum_probs=49.8
Q ss_pred CCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 026320 33 HDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 101 (240)
Q Consensus 33 ~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~ 101 (240)
+++++..=|++-..+.. .+++|++.|++.|.+.+=|- +||.++..++++.++++|+..++=+
T Consensus 77 ~~~p~ilm~Y~N~i~~~---G~~~F~~~~~~aGv~Gviip----DLP~ee~~~~~~~~~~~gl~~I~lv 138 (250)
T PLN02591 77 LSCPIVLFTYYNPILKR---GIDKFMATIKEAGVHGLVVP----DLPLEETEALRAEAAKNGIELVLLT 138 (250)
T ss_pred CCCCEEEEecccHHHHh---HHHHHHHHHHHcCCCEEEeC----CCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 45543333677777766 49999999999999999887 5899999999999999999877644
No 165
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=88.17 E-value=3.2 Score=41.44 Aligned_cols=93 Identities=14% Similarity=0.142 Sum_probs=63.4
Q ss_pred HHHHHHHc----CCCEEEecCCcccCChhHH------------HHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 026320 57 YVEDCKQV----GFDTIELNVGSLEIPEETL------------LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 120 (240)
Q Consensus 57 yl~~~k~l----GF~~IEISdGti~l~~~~r------------~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~ 120 (240)
-++.+.+. |.+.|-+.-.+-++-.+.+ .+.|+.++++|++. .+|+-.+.
T Consensus 169 dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~-v~f~~EDa-------------- 233 (503)
T PLN03228 169 DIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHD-IQFGCEDG-------------- 233 (503)
T ss_pred hHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCce-EEeccccc--------------
Confidence 34444444 7777887655554443322 57888999998861 23443211
Q ss_pred ccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 121 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
+..|++.+.+.++...++||+.| .++|..|-..+..+.+++..+
T Consensus 234 ----------~Rtd~efl~~~~~~a~~~Gad~I-----~l~DTvG~~tP~~v~~lV~~l 277 (503)
T PLN03228 234 ----------GRSDKEFLCKILGEAIKAGATSV-----GIADTVGINMPHEFGELVTYV 277 (503)
T ss_pred ----------cccCHHHHHHHHHHHHhcCCCEE-----EEecCCCCCCHHHHHHHHHHH
Confidence 01257889999999999999986 478899999998888877554
No 166
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=87.98 E-value=9 Score=35.09 Aligned_cols=106 Identities=17% Similarity=0.285 Sum_probs=71.8
Q ss_pred hCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCC
Q 026320 32 QHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIP 111 (240)
Q Consensus 32 ~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg 111 (240)
..++++..=|++...+..| +++|++.|++.|++.+=| -+||.++..++.+.++++|+..++=+...
T Consensus 85 ~~~~pivlm~Y~N~i~~~G---~e~F~~~~~~aGvdGlIi----pDLP~ee~~~~~~~~~~~gl~~I~lv~p~------- 150 (259)
T PF00290_consen 85 EPDIPIVLMTYYNPIFQYG---IERFFKEAKEAGVDGLII----PDLPPEESEELREAAKKHGLDLIPLVAPT------- 150 (259)
T ss_dssp CTSSEEEEEE-HHHHHHH----HHHHHHHHHHHTEEEEEE----TTSBGGGHHHHHHHHHHTT-EEEEEEETT-------
T ss_pred CCCCCEEEEeeccHHhccc---hHHHHHHHHHcCCCEEEE----cCCChHHHHHHHHHHHHcCCeEEEEECCC-------
Confidence 3455666668889888886 999999999999998876 46889999999999999998877644431
Q ss_pred CccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-ccccCCCCccHHHHHHHHh
Q 026320 112 SDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-DVCKHADSLRADIIAKVIG 177 (240)
Q Consensus 112 ~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-gi~d~~g~~r~d~v~~i~~ 177 (240)
+++++++.+. +.+..+|=.=++ |++-....+.. .+.+.++
T Consensus 151 ----------------------t~~~Ri~~i~---~~a~gFiY~vs~~GvTG~~~~~~~-~l~~~i~ 191 (259)
T PF00290_consen 151 ----------------------TPEERIKKIA---KQASGFIYLVSRMGVTGSRTELPD-ELKEFIK 191 (259)
T ss_dssp ----------------------S-HHHHHHHH---HH-SSEEEEESSSSSSSTTSSCHH-HHHHHHH
T ss_pred ----------------------CCHHHHHHHH---HhCCcEEEeeccCCCCCCcccchH-HHHHHHH
Confidence 2466666654 444556665555 77766665543 3444443
No 167
>PRK06801 hypothetical protein; Provisional
Probab=87.97 E-value=20 Score=33.21 Aligned_cols=116 Identities=18% Similarity=0.268 Sum_probs=71.5
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHH----HHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSLEIPEETLL----RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 129 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti~l~~~~r~----~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 129 (240)
.-+.++.|-+.||+.|=+ ||+- +|.++-. ++.+.++..|.-|--|+|. +|..++... ..+. ..
T Consensus 86 ~~e~i~~Ai~~GftSVm~-D~S~-l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~------vgg~e~~v~---~~~~--~~ 152 (286)
T PRK06801 86 HFEAVVRALRLGFSSVMF-DGST-LEYEENVRQTREVVKMCHAVGVSVEAELGA------VGGDEGGAL---YGEA--DS 152 (286)
T ss_pred CHHHHHHHHHhCCcEEEE-cCCC-CCHHHHHHHHHHHHHHHHHcCCeEEeecCc------ccCCCCCcc---cCCc--cc
Confidence 346677888899999999 4543 4555544 4566677888888788887 221221100 0000 00
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecc----ccccCCCCccHHHHHHHHhccCCCceEE
Q 026320 130 EYVEDVDLLIRRAERCLEAGADMIMIDSD----DVCKHADSLRADIIAKVIGRLGLEKTMF 186 (240)
Q Consensus 130 ~~~~~~~~~i~~~~~dLeAGA~~ViiEar----gi~d~~g~~r~d~v~~i~~~~~~~~lif 186 (240)
.+-.+|++..+.++ +.|+|++=+ += |.|+..-.++-+.+.+|-+.++.--++-
T Consensus 153 ~~~T~pe~a~~f~~---~tgvD~LAv-aiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlH 209 (286)
T PRK06801 153 AKFTDPQLARDFVD---RTGIDALAV-AIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLH 209 (286)
T ss_pred ccCCCHHHHHHHHH---HHCcCEEEe-ccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEE
Confidence 01125555444443 579999999 63 7888766799999999987765333333
No 168
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=87.86 E-value=5.8 Score=34.04 Aligned_cols=81 Identities=22% Similarity=0.275 Sum_probs=48.2
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccc
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF 118 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGti-------------~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~ 118 (240)
+.+.+..+.+++.|||.|||+-|.- .=..+.-.++|+.+++. .. .-+.+|...+
T Consensus 67 ~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~-~~--~~v~vk~r~~---------- 133 (231)
T cd02801 67 ETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREA-VP--IPVTVKIRLG---------- 133 (231)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHh-cC--CCEEEEEeec----------
Confidence 3455556667788999999996651 11333345667777653 10 1244442110
Q ss_pred ccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 119 GAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
|. +.++.++.++..-++|+++|.+-++
T Consensus 134 --------~~-----~~~~~~~~~~~l~~~Gvd~i~v~~~ 160 (231)
T cd02801 134 --------WD-----DEEETLELAKALEDAGASALTVHGR 160 (231)
T ss_pred --------cC-----CchHHHHHHHHHHHhCCCEEEECCC
Confidence 11 0135677777777899999999776
No 169
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=87.80 E-value=5.6 Score=36.49 Aligned_cols=82 Identities=21% Similarity=0.329 Sum_probs=46.5
Q ss_pred EEEecCccccccChhHHHHHHHHHHhC----CceecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc----
Q 026320 7 GLKFSGGSHSLMPKPFIEEVVKRAHQH----DVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE---- 77 (240)
Q Consensus 7 ~lKfg~GTs~l~p~~~l~eKi~l~~~~----gV~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~---- 77 (240)
-+.|.+|--.+.+ .+.+.++.+++. .|.+.| |++ ++++++.+++.|.+.|-||=.+.+
T Consensus 68 ~I~~tGGEPll~~--~l~~li~~i~~~~~~~~i~itTNG~l-----------l~~~~~~L~~agl~~i~ISlds~~~e~~ 134 (331)
T PRK00164 68 KVRLTGGEPLLRK--DLEDIIAALAALPGIRDLALTTNGYL-----------LARRAAALKDAGLDRVNVSLDSLDPERF 134 (331)
T ss_pred EEEEECCCCcCcc--CHHHHHHHHHhcCCCceEEEEcCchh-----------HHHHHHHHHHcCCCEEEEEeccCCHHHh
Confidence 4455556555543 355556655554 122333 332 334566677778888877744321
Q ss_pred ------CChhHHHHHHHHHHHcCC-ccccee
Q 026320 78 ------IPEETLLRYVRLVKSAGL-KAKPKF 101 (240)
Q Consensus 78 ------l~~~~r~~lI~~~~~~G~-~v~~E~ 101 (240)
-+.+...+.|+.+++.|+ .++-.+
T Consensus 135 ~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~ 165 (331)
T PRK00164 135 KAITGRDRLDQVLAGIDAALAAGLTPVKVNA 165 (331)
T ss_pred ccCCCCCCHHHHHHHHHHHHHCCCCcEEEEE
Confidence 245666777888888877 554444
No 170
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=87.72 E-value=11 Score=34.28 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 134 DVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
++++.++.++..-++|+++|-+=++
T Consensus 226 ~~~e~~~la~~l~~~G~d~i~vs~g 250 (327)
T cd02803 226 TLEEAIEIAKALEEAGVDALHVSGG 250 (327)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 5788899999999999999988655
No 171
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=87.61 E-value=7.7 Score=36.41 Aligned_cols=72 Identities=21% Similarity=0.321 Sum_probs=49.9
Q ss_pred HHHHHHHHHHcCCC-----EEEecC----Ccc---cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 026320 54 FKEYVEDCKQVGFD-----TIELNV----GSL---EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 121 (240)
Q Consensus 54 ~~~yl~~~k~lGF~-----~IEISd----Gti---~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~ 121 (240)
.++-++.+|+.|.+ .+|+-+ ..+ ..+.++|.+.|+.+++.|+++.+ |...+..
T Consensus 149 ~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~s--g~i~Glg------------- 213 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNA--TMLYGHI------------- 213 (351)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcce--EEEeeCC-------------
Confidence 46779999999986 355533 111 46778889999999999998866 4444332
Q ss_pred cccCCCCcccccCHHHHHHHHHHHHHcCCc
Q 026320 122 VARAPRSTEYVEDVDLLIRRAERCLEAGAD 151 (240)
Q Consensus 122 ~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~ 151 (240)
++++++++.+..--+.+.+
T Consensus 214 -----------Et~edrv~~l~~Lr~l~~~ 232 (351)
T TIGR03700 214 -----------ETPAHRVDHMLRLRELQDE 232 (351)
T ss_pred -----------CCHHHHHHHHHHHHHhhHh
Confidence 1357777777766666664
No 172
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=87.57 E-value=5.9 Score=35.99 Aligned_cols=94 Identities=15% Similarity=0.218 Sum_probs=67.0
Q ss_pred HHHHHHHHHcCCCEEEecCCc--------ccCChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 026320 55 KEYVEDCKQVGFDTIELNVGS--------LEIPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 122 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGt--------i~l~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 122 (240)
.+.++.+.+.|.+.|-+.-.. ...+.++ -.++|+.+++.|++| .++..+.. .
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v--~~~~eda~-----------r--- 137 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEV--RFSSEDSF-----------R--- 137 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE--EEEEEeeC-----------C---
Confidence 456888999999999985432 2333333 456778999999764 45553211 0
Q ss_pred ccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 123 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 123 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
.+++.+.+.+++..++||+.| .+.|..|-..++.+.++++.+
T Consensus 138 ----------~~~~~l~~~~~~~~~~g~~~i-----~l~Dt~G~~~P~~v~~~~~~~ 179 (262)
T cd07948 138 ----------SDLVDLLRVYRAVDKLGVNRV-----GIADTVGIATPRQVYELVRTL 179 (262)
T ss_pred ----------CCHHHHHHHHHHHHHcCCCEE-----EECCcCCCCCHHHHHHHHHHH
Confidence 136778888888899999965 468889999999999888754
No 173
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=87.50 E-value=3.8 Score=37.19 Aligned_cols=110 Identities=12% Similarity=0.071 Sum_probs=71.6
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCC
Q 026320 50 GPSAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 126 (240)
Q Consensus 50 g~~~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 126 (240)
+.+.+.++++++.+.|.+.|=+.-.| ..|+.++|.++++.+.+.-=+|. +|+ |
T Consensus 18 D~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~vi--~gv-------g--------------- 73 (279)
T cd00953 18 DKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDKVI--FQV-------G--------------- 73 (279)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCCEE--EEe-------C---------------
Confidence 34478899999999999999885443 58999999999998887421111 122 1
Q ss_pred CCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccC-CCCccHHHHHHHHhccCCCceEEecCC
Q 026320 127 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH-ADSLRADIIAKVIGRLGLEKTMFEATN 190 (240)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~-~g~~r~d~v~~i~~~~~~~~lifEAP~ 190 (240)
..++.+.++.++..-++||+.|++=.--.|.. .-+--.+-..++++ ++.=++...|.
T Consensus 74 -----~~~~~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~--~lpv~iYn~P~ 131 (279)
T cd00953 74 -----SLNLEESIELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS--PYPTFIYNYPK 131 (279)
T ss_pred -----cCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh--cCCEEEEeCcc
Confidence 01468889999999999999999855432221 11111222333444 55556666663
No 174
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=87.24 E-value=5.4 Score=36.14 Aligned_cols=94 Identities=18% Similarity=0.231 Sum_probs=64.6
Q ss_pred HHHHHHHHcCCCEEEecCCcc--------cCC----hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 026320 56 EYVEDCKQVGFDTIELNVGSL--------EIP----EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 123 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti--------~l~----~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~ 123 (240)
.-++.+.+.|.+.|-|...+- ..+ .+.-.++|+++++.|++|. ++... .. |.
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~--~~~~~-~~------d~------- 145 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVI--FDAEH-FF------DG------- 145 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEE--EeEEe-cc------cc-------
Confidence 356778899999999864432 122 2233578899999998652 22210 00 00
Q ss_pred cCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHh
Q 026320 124 RAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 177 (240)
Q Consensus 124 ~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~ 177 (240)
...+++.+++.+++..++|++.|. +.|..|...+..+..+++
T Consensus 146 -------~~~~~~~~~~~~~~~~~~g~~~i~-----l~DT~G~~~P~~v~~lv~ 187 (273)
T cd07941 146 -------YKANPEYALATLKAAAEAGADWLV-----LCDTNGGTLPHEIAEIVK 187 (273)
T ss_pred -------CCCCHHHHHHHHHHHHhCCCCEEE-----EecCCCCCCHHHHHHHHH
Confidence 011578889999999999999764 789999999999988885
No 175
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=87.22 E-value=19 Score=33.50 Aligned_cols=177 Identities=13% Similarity=0.204 Sum_probs=104.0
Q ss_pred ecCccccccChhHHHHHHHHHHhCCcee----cCCcH----HHHHHH------------------hCCchHHHHHHHHHH
Q 026320 10 FSGGSHSLMPKPFIEEVVKRAHQHDVYV----STGDW----AEHLIR------------------NGPSAFKEYVEDCKQ 63 (240)
Q Consensus 10 fg~GTs~l~p~~~l~eKi~l~~~~gV~v----~~Gtl----~E~a~~------------------qg~~~~~~yl~~~k~ 63 (240)
++-|.+-++.-+.++.-|+-|.+.+-++ ++|+. ++.+.. ++ .--+.+.+|-+
T Consensus 18 yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lHLDH~--~~~e~i~~Ai~ 95 (283)
T PRK07998 18 VLAGAFNTTNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLHLDHG--KTFEDVKQAVR 95 (283)
T ss_pred CEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEECcCC--CCHHHHHHHHH
Confidence 4556677777777888888888777322 22211 121111 22 22356778889
Q ss_pred cCCCEEEecCCcccCChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHH
Q 026320 64 VGFDTIELNVGSLEIPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 139 (240)
Q Consensus 64 lGF~~IEISdGti~l~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i 139 (240)
.||+.|=+ |||- +|.++ =+++++.|+..|.-|--|+|.--+ ++|..... ...-.||++..
T Consensus 96 ~GftSVM~-DgS~-l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg------~ed~~~~~--------~~~~T~pe~a~ 159 (283)
T PRK07998 96 AGFTSVMI-DGAA-LPFEENIAFTKEAVDFAKSYGVPVEAELGAILG------KEDDHVSE--------ADCKTEPEKVK 159 (283)
T ss_pred cCCCEEEE-eCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCC------cccccccc--------ccccCCHHHHH
Confidence 99999999 6664 56643 346778888899999899998321 11210000 01112677665
Q ss_pred HHHHHHHHcCCcEEEEecc---ccccCCCCccHHHHHHHHhccCCCceEEecC-Cc-hhHHHHHHHhCCCcccc
Q 026320 140 RRAERCLEAGADMIMIDSD---DVCKHADSLRADIIAKVIGRLGLEKTMFEAT-NP-RTSEWFIRRYGPKVNLF 208 (240)
Q Consensus 140 ~~~~~dLeAGA~~ViiEar---gi~d~~g~~r~d~v~~i~~~~~~~~lifEAP-~k-~qQ~~~I~~fG~~VNLg 208 (240)
+.++ +-|+|.+=+==- |+|.. -+++.|.+++|-+.++.-=+|==++ .+ +|....|+.==..||.+
T Consensus 160 ~Fv~---~TgvD~LAvaiGt~HG~Y~~-p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 229 (283)
T PRK07998 160 DFVE---RTGCDMLAVSIGNVHGLEDI-PRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILRSFVNYKVAKVNIA 229 (283)
T ss_pred HHHH---HhCcCeeehhccccccCCCC-CCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHHcCCcEEEEC
Confidence 5554 468886655432 89976 7788999999988765433333322 23 23333333333456654
No 176
>PRK08508 biotin synthase; Provisional
Probab=87.20 E-value=15 Score=33.47 Aligned_cols=113 Identities=17% Similarity=0.084 Sum_probs=73.8
Q ss_pred ccChhHHHHHHHHHHhCCc-eec---CC-c----HHHHHH-------HhCCc-h--------HHHHHHHHHHcCCCEEEe
Q 026320 17 LMPKPFIEEVVKRAHQHDV-YVS---TG-D----WAEHLI-------RNGPS-A--------FKEYVEDCKQVGFDTIEL 71 (240)
Q Consensus 17 l~p~~~l~eKi~l~~~~gV-~v~---~G-t----l~E~a~-------~qg~~-~--------~~~yl~~~k~lGF~~IEI 71 (240)
+++++.+.+.+..+++.|+ .++ .| + ++|++. .++|+ . -++-++..|+.|.+.+-+
T Consensus 39 ~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~ 118 (279)
T PRK08508 39 RKDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNH 118 (279)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcc
Confidence 4566778888888888888 333 23 2 455443 12232 1 278888889999988876
Q ss_pred cCCcc---------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHH
Q 026320 72 NVGSL---------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRA 142 (240)
Q Consensus 72 SdGti---------~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~ 142 (240)
+..|- .-+-+++.+.|+.+++.|+++.+ |.-.+.. ++.+++++.+
T Consensus 119 ~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~s--g~I~GlG------------------------Et~ed~~~~l 172 (279)
T PRK08508 119 NLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCS--GGIFGLG------------------------ESWEDRISFL 172 (279)
T ss_pred cccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecc--eeEEecC------------------------CCHHHHHHHH
Confidence 54332 23457888899999999987777 4433321 1467888888
Q ss_pred HHHHHcCCcEEEE
Q 026320 143 ERCLEAGADMIMI 155 (240)
Q Consensus 143 ~~dLeAGA~~Vii 155 (240)
..--+-+.+.|-+
T Consensus 173 ~~lr~L~~~svpl 185 (279)
T PRK08508 173 KSLASLSPHSTPI 185 (279)
T ss_pred HHHHcCCCCEEee
Confidence 7777888886543
No 177
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=87.09 E-value=2.7 Score=38.20 Aligned_cols=75 Identities=27% Similarity=0.311 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHcC-CCEEEecCCcc---------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 026320 53 AFKEYVEDCKQVG-FDTIELNVGSL---------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 122 (240)
Q Consensus 53 ~~~~yl~~~k~lG-F~~IEISdGti---------~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 122 (240)
.+.+..+.+++.| ||+|||+-++- .-..+.-.++++.+++.- -+| +.+|-.
T Consensus 105 ~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~--~~p-v~vKl~---------------- 165 (301)
T PRK07259 105 EYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV--KVP-VIVKLT---------------- 165 (301)
T ss_pred HHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCC-EEEEcC----------------
Confidence 4556666777889 99999954322 223456678888888752 112 444421
Q ss_pred ccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEe
Q 026320 123 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMID 156 (240)
Q Consensus 123 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiE 156 (240)
| +.++.++.++...++||+.|.+=
T Consensus 166 -~---------~~~~~~~~a~~l~~~G~d~i~~~ 189 (301)
T PRK07259 166 -P---------NVTDIVEIAKAAEEAGADGLSLI 189 (301)
T ss_pred -C---------CchhHHHHHHHHHHcCCCEEEEE
Confidence 0 23456777778889999998763
No 178
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=86.99 E-value=5.7 Score=36.76 Aligned_cols=46 Identities=24% Similarity=0.298 Sum_probs=34.8
Q ss_pred HHHHHHHHHcCCCEEEe-----c-CCcc------cCChhHHHHHHHHHHHcCCcccce
Q 026320 55 KEYVEDCKQVGFDTIEL-----N-VGSL------EIPEETLLRYVRLVKSAGLKAKPK 100 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEI-----S-dGti------~l~~~~r~~lI~~~~~~G~~v~~E 100 (240)
++-++..|+.|++.+-- . +-+. ..+.+++.+.|+.+++.|+++.+-
T Consensus 143 ~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~ 200 (340)
T TIGR03699 143 REVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTAT 200 (340)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccce
Confidence 78889999999987631 1 1111 247889999999999999987653
No 179
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=86.93 E-value=1.8 Score=39.99 Aligned_cols=70 Identities=20% Similarity=0.366 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHcCCCEEEec------CCcc-------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 026320 53 AFKEYVEDCKQVGFDTIELN------VGSL-------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 119 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEIS------dGti-------~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~ 119 (240)
.++.|++.+|++||..|-=- ||.. -|.-+.=.++|++|+++||...+=+ -
T Consensus 96 ~~~~fl~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yv-f---------------- 158 (268)
T PF09370_consen 96 DMDRFLDELKELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYV-F---------------- 158 (268)
T ss_dssp -HHHHHHHHHHHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE------------------
T ss_pred cHHHHHHHHHHhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeee-c----------------
Confidence 58999999999999988522 2222 3455666789999999888654411 1
Q ss_pred cccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 120 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
+ .+++++-.+||||.+.+=-
T Consensus 159 --------------~----~e~A~~M~~AGaDiiv~H~ 178 (268)
T PF09370_consen 159 --------------N----EEQARAMAEAGADIIVAHM 178 (268)
T ss_dssp --------------S----HHHHHHHHHHT-SEEEEE-
T ss_pred --------------C----HHHHHHHHHcCCCEEEecC
Confidence 1 4677777899999988765
No 180
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=86.88 E-value=16 Score=35.02 Aligned_cols=135 Identities=17% Similarity=0.145 Sum_probs=85.3
Q ss_pred HHHHHHHhCCceecC----C-c----HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHH----HHHHHHH
Q 026320 25 EVVKRAHQHDVYVST----G-D----WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLL----RYVRLVK 91 (240)
Q Consensus 25 eKi~l~~~~gV~v~~----G-t----l~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~----~lI~~~~ 91 (240)
--..+++++.|+|+- | + |||.++.- +.+++..|.+.||+-|=+. || .+|.++=. +++++++
T Consensus 78 ~v~~~A~~~~VPValHLDHg~~~~~~~~~~~~~a----~~~~~~~a~~~GftSVMiD-gS-~lp~eENI~~TkevVe~Ah 151 (345)
T cd00946 78 HVRSMAEHYGVPVVLHTDHCAKKLLPWFDGLLEA----DEEYFKQHGEPLFSSHMLD-LS-EEPLEENIEICKKYLERMA 151 (345)
T ss_pred HHHHHHHHCCCCEEEECCCCCCccchhhHHHHHH----HHHHHHHhccCCCceEEee-CC-CCCHHHHHHHHHHHHHHHH
Confidence 334688899998873 5 4 68888664 4689999999999999665 54 35655533 5667788
Q ss_pred HcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHH-cCCcEEEEec---ccccc-CCCC
Q 026320 92 SAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLE-AGADMIMIDS---DDVCK-HADS 166 (240)
Q Consensus 92 ~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLe-AGA~~ViiEa---rgi~d-~~g~ 166 (240)
..|.-|--|+|.--+ .|-+...+. .+. ...-.||++..+.+++--. -|.|.+=+== -|+|. ..-+
T Consensus 152 ~~gvsVEaElG~igg-~ed~~~~~~------~~~---~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~ 221 (345)
T cd00946 152 KINMWLEMEIGITGG-EEDGVDNSG------VDN---AELYTQPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVK 221 (345)
T ss_pred HcCCEEEEEecccCC-cccCccccc------ccc---cccCCCHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCc
Confidence 889999999998421 111100000 000 0011266666666553211 2777554432 39998 4778
Q ss_pred ccHHHHHHH
Q 026320 167 LRADIIAKV 175 (240)
Q Consensus 167 ~r~d~v~~i 175 (240)
++-+.+++|
T Consensus 222 L~~~~L~~I 230 (345)
T cd00946 222 LQPEILGEH 230 (345)
T ss_pred cCHHHHHHH
Confidence 999999999
No 181
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=86.83 E-value=12 Score=34.41 Aligned_cols=46 Identities=15% Similarity=0.374 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCCCEEE-ecCCcc-----------cCChhHHHHHHHHHHHcCCcccc
Q 026320 54 FKEYVEDCKQVGFDTIE-LNVGSL-----------EIPEETLLRYVRLVKSAGLKAKP 99 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IE-ISdGti-----------~l~~~~r~~lI~~~~~~G~~v~~ 99 (240)
.++.++..|+.|.+.+- ++--+. ..+.++|.+.++.+++.|+++.+
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s 163 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTA 163 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcee
Confidence 57899999999998772 321111 35778899999999999988775
No 182
>PRK05926 hypothetical protein; Provisional
Probab=86.76 E-value=7.7 Score=37.09 Aligned_cols=115 Identities=16% Similarity=0.231 Sum_probs=75.7
Q ss_pred ccccccChhHHHHHHHHHHhC--CceecCCcHHHHHHHhC--CchHHHHHHHHHHcCCCEE-----EecCCcc-------
Q 026320 13 GSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNG--PSAFKEYVEDCKQVGFDTI-----ELNVGSL------- 76 (240)
Q Consensus 13 GTs~l~p~~~l~eKi~l~~~~--gV~v~~Gtl~E~a~~qg--~~~~~~yl~~~k~lGF~~I-----EISdGti------- 76 (240)
|-..-.+-+.+.+.++..+++ ++.++.=+-.|+++... .-..++.++..|+.|.+.+ |+.+-++
T Consensus 123 G~~p~~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~ 202 (370)
T PRK05926 123 GCFPSCNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPG 202 (370)
T ss_pred CcCCCCCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCC
Confidence 444334556677777777765 56655434566666432 1246899999999999654 4434333
Q ss_pred cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEE
Q 026320 77 EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 153 (240)
Q Consensus 77 ~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~V 153 (240)
..+.++|.+.++.+++.|+++-+ |.-++.. ++++++++.+..--+-+.+.+
T Consensus 203 ~~t~~e~l~~i~~a~~~Gi~~~s--gmi~G~g------------------------Et~edrv~~l~~Lr~Lq~~t~ 253 (370)
T PRK05926 203 RLSSQGFLEIHKTAHSLGIPSNA--TMLCYHR------------------------ETPEDIVTHMSKLRALQDKTS 253 (370)
T ss_pred CCCHHHHHHHHHHHHHcCCcccC--ceEEeCC------------------------CCHHHHHHHHHHHHhcCCccC
Confidence 34679999999999999999877 3433221 246888888877666666543
No 183
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=86.47 E-value=5.2 Score=39.99 Aligned_cols=97 Identities=15% Similarity=0.256 Sum_probs=67.7
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChh------------HHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 026320 55 KEYVEDCKQVGFDTIELNVGSLEIPEE------------TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 122 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGti~l~~~------------~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 122 (240)
+.-++.+.+.|.+.|-+...+-++-.+ .-.+.|+.+++.|++|. |+-.+-. | +
T Consensus 88 d~~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~--~~~e~~~-------D----a-- 152 (524)
T PRK12344 88 DPNLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVI--FDAEHFF-------D----G-- 152 (524)
T ss_pred HHHHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEE--Ecccccc-------c----c--
Confidence 455678888999999998665433222 22367888899888752 3331000 1 0
Q ss_pred ccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 123 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 123 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
...|++.+++.++...++||+.|. ++|..|-..+..+.++++.+
T Consensus 153 --------~r~d~~~l~~~~~~~~~~Gad~i~-----l~DTvG~~~P~~v~~li~~l 196 (524)
T PRK12344 153 --------YKANPEYALATLKAAAEAGADWVV-----LCDTNGGTLPHEVAEIVAEV 196 (524)
T ss_pred --------ccCCHHHHHHHHHHHHhCCCCeEE-----EccCCCCcCHHHHHHHHHHH
Confidence 012688899999999999999887 88899999988888887654
No 184
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=86.41 E-value=13 Score=34.04 Aligned_cols=65 Identities=9% Similarity=0.175 Sum_probs=51.0
Q ss_pred hCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 026320 32 QHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 103 (240)
Q Consensus 32 ~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~ 103 (240)
++++++..=|++...++.| +++|++.|++.|++.|=|= ++|.++..++++.++++|+.+.+=+..
T Consensus 89 ~~~~p~vlm~Y~N~i~~~G---~e~F~~~~~~aGvdgviip----DLP~ee~~~~~~~~~~~gi~~I~lv~P 153 (263)
T CHL00200 89 EIKAPIVIFTYYNPVLHYG---INKFIKKISQAGVKGLIIP----DLPYEESDYLISVCNLYNIELILLIAP 153 (263)
T ss_pred CCCCCEEEEecccHHHHhC---HHHHHHHHHHcCCeEEEec----CCCHHHHHHHHHHHHHcCCCEEEEECC
Confidence 3555544336777777775 9999999999999999774 678899999999999999887664433
No 185
>PRK09989 hypothetical protein; Provisional
Probab=86.33 E-value=1.4 Score=38.86 Aligned_cols=43 Identities=19% Similarity=0.342 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 99 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~ 99 (240)
.+.+.++.++++||+.||+.. ....+ ..++-+.+++.|+++..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~-~~~~~---~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLF-PYDYS---TLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECC-cccCC---HHHHHHHHHHcCCcEEE
Confidence 789999999999999999963 33344 34567778898998653
No 186
>smart00642 Aamy Alpha-amylase domain.
Probab=86.22 E-value=1.9 Score=36.45 Aligned_cols=50 Identities=20% Similarity=0.180 Sum_probs=37.4
Q ss_pred HHHHHHHHcCCCEEEecCCccc-----------------C-----ChhHHHHHHHHHHHcCCcccceeeeec
Q 026320 56 EYVEDCKQVGFDTIELNVGSLE-----------------I-----PEETLLRYVRLVKSAGLKAKPKFAVMF 105 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti~-----------------l-----~~~~r~~lI~~~~~~G~~v~~E~g~k~ 105 (240)
+-+++++++||++|.++-=+-. + +.++..++|+.++++|++|+-.+-...
T Consensus 23 ~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 23 EKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred HHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 3355778899999987642111 1 237889999999999999999988743
No 187
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=86.20 E-value=11 Score=34.84 Aligned_cols=130 Identities=12% Similarity=0.026 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhCCceecCCc-----H-HHHHHHhCCchHHHHHHHHHHc---C---CCEEEecCCcccCChhHHHHHHHH
Q 026320 22 FIEEVVKRAHQHDVYVSTGD-----W-AEHLIRNGPSAFKEYVEDCKQV---G---FDTIELNVGSLEIPEETLLRYVRL 89 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~Gt-----l-~E~a~~qg~~~~~~yl~~~k~l---G---F~~IEISdGti~l~~~~r~~lI~~ 89 (240)
.+++.+++++++|.. |.++ | .|-+-.-.++.+.++++.+.+. | .+.|-++|-.--..+.+-.++++.
T Consensus 121 ~~~~~v~~a~~~g~~-~~~~~~~~~~~~EDasr~~~~~l~~~~~~~~~~~~~g~~~~~~i~laDTvG~a~P~~v~~~~~~ 199 (284)
T cd07942 121 IAVDGAKLVKELAAK-YPETDWRFEYSPESFSDTELDFALEVCEAVIDVWQPTPENKIILNLPATVEVATPNVYADQIEW 199 (284)
T ss_pred HHHHHHHHHHHhccc-ccCceEEEEECCccCCCCCHHHHHHHHHHHHHhhcCCCCcceEEEccccccccCHHHHHHHHHH
Confidence 367788899999864 2110 1 2333334455788888888877 5 448889999988888888899998
Q ss_pred HHHc-CCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCC
Q 026320 90 VKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADS 166 (240)
Q Consensus 90 ~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~ 166 (240)
+++. +-....+++..+ -.|....+...-..+++||++| ++- |+=...||
T Consensus 200 l~~~~~~~~~~~~~~H~--------------------------Hnd~G~a~AN~laA~~aG~~~i--d~~~~g~GeRaGN 251 (284)
T cd07942 200 FCRNLSRRESVIISLHP--------------------------HNDRGTGVAAAELALLAGADRV--EGTLFGNGERTGN 251 (284)
T ss_pred HHHhcCCCCCceEEEEe--------------------------cCCCchHHHHHHHHHHhCCCEE--EeeCccCCccccc
Confidence 8763 111122344433 2234556778888899999985 454 77555899
Q ss_pred ccHHHHHHHHhccC
Q 026320 167 LRADIIAKVIGRLG 180 (240)
Q Consensus 167 ~r~d~v~~i~~~~~ 180 (240)
.-.+.+-..+...+
T Consensus 252 ~~~E~lv~~l~~~g 265 (284)
T cd07942 252 VDLVTLALNLYSQG 265 (284)
T ss_pred hhHHHHHHHHHhcC
Confidence 88887766665444
No 188
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=85.91 E-value=8.8 Score=35.03 Aligned_cols=110 Identities=17% Similarity=0.252 Sum_probs=78.7
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHH
Q 026320 58 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 137 (240)
Q Consensus 58 l~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 137 (240)
+.+++.+|-|+|=+--.. ++.++-.++++.+.+.||.|+.|++-
T Consensus 117 I~ea~~~GADavLLI~~~--L~~~~l~~l~~~a~~lGle~LVEVh~---------------------------------- 160 (247)
T PRK13957 117 IREARAFGASAILLIVRI--LTPSQIKSFLKHASSLGMDVLVEVHT---------------------------------- 160 (247)
T ss_pred HHHHHHcCCCEEEeEHhh--CCHHHHHHHHHHHHHcCCceEEEECC----------------------------------
Confidence 567788999999555444 46778889999999999999999876
Q ss_pred HHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCce-EEecCCc-hhHHHHHHHhCCCccc
Q 026320 138 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEATNP-RTSEWFIRRYGPKVNL 207 (240)
Q Consensus 138 ~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~l-ifEAP~k-~qQ~~~I~~fG~~VNL 207 (240)
-+.+++.+++||..|-|-.|.+..- ++..+...+++..+|-+.+ |-|.=-+ ..+...+++. .|--|
T Consensus 161 -~~El~~a~~~ga~iiGINnRdL~t~--~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~davL 228 (247)
T PRK13957 161 -EDEAKLALDCGAEIIGINTRDLDTF--QIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-VDAAL 228 (247)
T ss_pred -HHHHHHHHhCCCCEEEEeCCCCccc--eECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-CCEEE
Confidence 2456677899999999999976433 4456667888888886655 4454422 2444445554 44333
No 189
>PRK05927 hypothetical protein; Provisional
Probab=85.80 E-value=10 Score=35.90 Aligned_cols=53 Identities=13% Similarity=0.309 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHcCCC-----EEEecCCcc-------cCChhHHHHHHHHHHHcCCcccceeeeecCC
Q 026320 53 AFKEYVEDCKQVGFD-----TIELNVGSL-------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNK 107 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~-----~IEISdGti-------~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~ 107 (240)
..++.++..|+.|.+ ..|+++-.+ .++.++|++.|+.|++.|+++-+ |.-.+.
T Consensus 145 ~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~lGi~~~s--g~l~G~ 209 (350)
T PRK05927 145 STEQALERLWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHRLGFRSTA--TMMFGH 209 (350)
T ss_pred CHHHHHHHHHHcCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHHcCCCcCc--eeEEee
Confidence 467888999999997 789998544 56779999999999999998887 665544
No 190
>PRK04302 triosephosphate isomerase; Provisional
Probab=85.78 E-value=12 Score=32.76 Aligned_cols=91 Identities=23% Similarity=0.225 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHhCCce--ecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC----Ccc-c---CChhHHHHHHHHH
Q 026320 21 PFIEEVVKRAHQHDVY--VSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV----GSL-E---IPEETLLRYVRLV 90 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~--v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd----Gti-~---l~~~~r~~lI~~~ 90 (240)
+.+++|++.++++|+. +|.|+.- . ++.+.++|.+.|.+-. ||- . -+++.-.++++.+
T Consensus 101 ~e~~~~v~~a~~~Gl~~I~~v~~~~---------~----~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~i 167 (223)
T PRK04302 101 ADIEAVVERAKKLGLESVVCVNNPE---------T----SAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAV 167 (223)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCHH---------H----HHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHH
Confidence 4588999999999993 3457721 1 1234566778887532 332 2 3345555667777
Q ss_pred HHc--CCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 91 KSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 91 ~~~--G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
++. +..++.++|++. -+.+++.+++|||-|+|=+
T Consensus 168 r~~~~~~pvi~GggI~~---------------------------------~e~~~~~~~~gadGvlVGs 203 (223)
T PRK04302 168 KKVNPDVKVLCGAGIST---------------------------------GEDVKAALELGADGVLLAS 203 (223)
T ss_pred HhccCCCEEEEECCCCC---------------------------------HHHHHHHHcCCCCEEEEeh
Confidence 763 567777777732 2455566789999988744
No 191
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=85.52 E-value=19 Score=33.43 Aligned_cols=137 Identities=12% Similarity=0.110 Sum_probs=84.1
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHH--HHHHHHHHHcCCcccceeeeecCCCCCCC-ccccccccccccCCCCcccc
Q 026320 56 EYVEDCKQVGFDTIELNVGSLEIPEETL--LRYVRLVKSAGLKAKPKFAVMFNKSDIPS-DRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti~l~~~~r--~~lI~~~~~~G~~v~~E~g~k~~~~evg~-~~d~~~~~~~~~~~~~~~~~ 132 (240)
+.+..|-+.||+-|=+..-.+++.+--+ +++++.|+..|.-|--|+|.--+. +-+. ..+. ...+
T Consensus 86 e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~-e~~~~~~~~--~~~~---------- 152 (282)
T TIGR01858 86 DDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGV-EDDLSVDEE--DALY---------- 152 (282)
T ss_pred HHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCc-cCCCccccc--hhcc----------
Confidence 6678889999999998765544433222 367788888999999999984211 1110 0000 0112
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEec---cccccCCCCccHHHHHHHHhccCCCceEEecC-Cc-hhHHHHHHHhCCCccc
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGLEKTMFEAT-NP-RTSEWFIRRYGPKVNL 207 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEa---rgi~d~~g~~r~d~v~~i~~~~~~~~lifEAP-~k-~qQ~~~I~~fG~~VNL 207 (240)
.||++..+.++ +-|+|.+=+== -|+|...-+++-|.+++|-+.++.-=++==+. .| +|....|+.==..||+
T Consensus 153 T~peea~~Fv~---~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 229 (282)
T TIGR01858 153 TDPQEAKEFVE---ATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIELGICKVNV 229 (282)
T ss_pred CCHHHHHHHHH---HHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEe
Confidence 26777777766 56988776543 29999888999999999988775322222111 22 3333444333345666
Q ss_pred c
Q 026320 208 F 208 (240)
Q Consensus 208 g 208 (240)
+
T Consensus 230 ~ 230 (282)
T TIGR01858 230 A 230 (282)
T ss_pred C
Confidence 5
No 192
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=85.28 E-value=7.8 Score=35.49 Aligned_cols=60 Identities=13% Similarity=0.086 Sum_probs=42.5
Q ss_pred cCccccccChhHHHHHHHHHHhC-CceecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc
Q 026320 11 SGGSHSLMPKPFIEEVVKRAHQH-DVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE 77 (240)
Q Consensus 11 g~GTs~l~p~~~l~eKi~l~~~~-gV~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~ 77 (240)
+.|......++.+.+-++..++. ++++.- -+. +...+.++.+.|.+.|.+.|=++|-+..
T Consensus 144 ~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~-------~~~~~~~~a~~~~~~Gadgi~~~Nt~~~ 205 (299)
T cd02940 144 GMGAAVGQDPELVEEICRWVREAVKIPVIAKLTP-------NITDIREIARAAKEGGADGVSAINTVNS 205 (299)
T ss_pred CCchhhccCHHHHHHHHHHHHHhcCCCeEEECCC-------CchhHHHHHHHHHHcCCCEEEEeccccc
Confidence 45666677888999999988864 555443 111 1125778888899999999998886643
No 193
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=85.26 E-value=5.7 Score=35.18 Aligned_cols=98 Identities=8% Similarity=0.066 Sum_probs=60.2
Q ss_pred ccChhHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcC
Q 026320 17 LMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAG 94 (240)
Q Consensus 17 l~p~~~l~eKi~l~~~~gV~v~~G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G 94 (240)
++.+..-.+-++.|++++|.+.|| |.-|+. .+.++|++.|-+-...... -..+|+.++.
T Consensus 91 ivsP~~~~~vi~~a~~~~i~~iPG~~TptEi~-------------~a~~~Ga~~vKlFPa~~~g----g~~~lk~l~~-- 151 (212)
T PRK05718 91 IVSPGLTPPLLKAAQEGPIPLIPGVSTPSELM-------------LGMELGLRTFKFFPAEASG----GVKMLKALAG-- 151 (212)
T ss_pred EECCCCCHHHHHHHHHcCCCEeCCCCCHHHHH-------------HHHHCCCCEEEEccchhcc----CHHHHHHHhc--
Confidence 333345557888899999998888 677733 2467999999994433221 1356666655
Q ss_pred CcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCC
Q 026320 95 LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHA 164 (240)
Q Consensus 95 ~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~ 164 (240)
++|.+... .+| + + + .+.+...|++|+..+.. +.-+++.+
T Consensus 152 --p~p~~~~~----ptG--G-------V-----------~----~~ni~~~l~ag~v~~vg-gs~L~~~~ 190 (212)
T PRK05718 152 --PFPDVRFC----PTG--G-------I-----------S----PANYRDYLALPNVLCIG-GSWMVPKD 190 (212)
T ss_pred --cCCCCeEE----EeC--C-------C-----------C----HHHHHHHHhCCCEEEEE-ChHhCCcc
Confidence 23433221 111 0 0 1 47888999999666666 66677543
No 194
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=85.23 E-value=12 Score=34.00 Aligned_cols=45 Identities=16% Similarity=0.291 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecc-ccc-cCCCCccHHHHHHHHhc
Q 026320 134 DVDLLIRRAERCLEAGADMIMIDSD-DVC-KHADSLRADIIAKVIGR 178 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiEar-gi~-d~~g~~r~d~v~~i~~~ 178 (240)
|.+..-+-.+-+|+||+.+||=-== .|. ...|+-|.+.+.+++..
T Consensus 187 dl~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~ 233 (236)
T TIGR03581 187 DLDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAI 233 (236)
T ss_pred cHHhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHH
Confidence 4566667777788888888874322 234 33588888888888764
No 195
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=85.15 E-value=4.1 Score=37.93 Aligned_cols=80 Identities=18% Similarity=0.245 Sum_probs=56.0
Q ss_pred EEecCccccccChhHHHHHHHHHHhC-Cceec--C-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-C--Ch
Q 026320 8 LKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVS--T-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-I--PE 80 (240)
Q Consensus 8 lKfg~GTs~l~p~~~l~eKi~l~~~~-gV~v~--~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~-l--~~ 80 (240)
.|-|.|++.+-+++.+.+-++-+++. ++++. . .||-+ ......++.+.+.+.|.+.|.|...|-+ + ..
T Consensus 106 ~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~-----~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~ 180 (321)
T PRK10415 106 NRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAP-----EHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGE 180 (321)
T ss_pred cCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccC-----CcchHHHHHHHHHHhCCCEEEEecCccccccCCC
Confidence 46688899999999999999988764 44433 2 34532 1124668888899999999999987642 1 12
Q ss_pred hHHHHHHHHHHHc
Q 026320 81 ETLLRYVRLVKSA 93 (240)
Q Consensus 81 ~~r~~lI~~~~~~ 93 (240)
.+ .++|++++++
T Consensus 181 a~-~~~i~~ik~~ 192 (321)
T PRK10415 181 AE-YDSIRAVKQK 192 (321)
T ss_pred cC-hHHHHHHHHh
Confidence 23 4788888773
No 196
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=85.09 E-value=8 Score=34.97 Aligned_cols=56 Identities=18% Similarity=0.083 Sum_probs=39.7
Q ss_pred cccccChhHHHHHHHHHHhC-CceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc
Q 026320 14 SHSLMPKPFIEEVVKRAHQH-DVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL 76 (240)
Q Consensus 14 Ts~l~p~~~l~eKi~l~~~~-gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti 76 (240)
.+....++.+.+.++-.+++ ++++..- +. +.+.+.+..+.+.+.|.|.|-++|.+.
T Consensus 133 ~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~-------~~~~~~~~a~~~~~~G~d~i~~~nt~~ 190 (296)
T cd04740 133 MAFGTDPEAVAEIVKAVKKATDVPVIVKLTP-------NVTDIVEIARAAEEAGADGLTLINTLK 190 (296)
T ss_pred ccccCCHHHHHHHHHHHHhccCCCEEEEeCC-------CchhHHHHHHHHHHcCCCEEEEECCCc
Confidence 34556678899999999988 7766641 11 112466778888999999999987544
No 197
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=85.00 E-value=7.3 Score=35.92 Aligned_cols=48 Identities=15% Similarity=0.300 Sum_probs=39.7
Q ss_pred HHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecC
Q 026320 140 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 189 (240)
Q Consensus 140 ~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifEAP 189 (240)
+++++.|++||++||+=+--+. ++.+.++++.++++.+|.++|+.=-.
T Consensus 95 e~i~~~l~~Ga~rViigT~Av~--~~~~~p~~v~~~~~~~G~~~IvvsiD 142 (262)
T PLN02446 95 ENAMSYLDAGASHVIVTSYVFR--DGQIDLERLKDLVRLVGKQRLVLDLS 142 (262)
T ss_pred HHHHHHHHcCCCEEEEchHHHh--CCCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 8899999999999999443333 47889999999999999999887433
No 198
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=84.94 E-value=8.9 Score=35.17 Aligned_cols=97 Identities=11% Similarity=0.052 Sum_probs=67.2
Q ss_pred HHHHHHHHHcCCCEEEecCCc------------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 026320 55 KEYVEDCKQVGFDTIELNVGS------------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 122 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGt------------i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 122 (240)
+.-++.+.+.|.+.|-++-.+ .+=..+.-.++|+.+++.|++| .++..+ .+
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v--~~~~~d----~~----------- 139 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEV--NIYLED----WS----------- 139 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEE--EEEEEe----CC-----------
Confidence 345888999999999887532 1222223446689999999763 455532 11
Q ss_pred ccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 123 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 123 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
.|+. .+++.+++.+++..++||+.|- ++|..|-..+..+.++++.+
T Consensus 140 ~~~r------~~~~~~~~~~~~~~~~G~~~i~-----l~DT~G~~~P~~v~~l~~~l 185 (280)
T cd07945 140 NGMR------DSPDYVFQLVDFLSDLPIKRIM-----LPDTLGILSPFETYTYISDM 185 (280)
T ss_pred CCCc------CCHHHHHHHHHHHHHcCCCEEE-----ecCCCCCCCHHHHHHHHHHH
Confidence 0111 2589999999999999999763 68888888888888887654
No 199
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=84.87 E-value=9.1 Score=36.33 Aligned_cols=113 Identities=23% Similarity=0.272 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHHhCCc-eec-CCc--H-----HH------------HHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-
Q 026320 20 KPFIEEVVKRAHQHDV-YVS-TGD--W-----AE------------HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE- 77 (240)
Q Consensus 20 ~~~l~eKi~l~~~~gV-~v~-~Gt--l-----~E------------~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~- 77 (240)
.+.+...++.+++.|| +|- +|| + -| +++..|.-.+..+.+.+|+.|.+.|-||=.|++
T Consensus 45 ~eei~~~~~~~~~~Gv~kvRlTGGEPllR~dl~eIi~~l~~~~~~~islTTNG~~L~~~a~~Lk~AGl~rVNVSLDsld~ 124 (322)
T COG2896 45 LEEIRRLVRAFAELGVEKVRLTGGEPLLRKDLDEIIARLARLGIRDLSLTTNGVLLARRAADLKEAGLDRVNVSLDSLDP 124 (322)
T ss_pred HHHHHHHHHHHHHcCcceEEEeCCCchhhcCHHHHHHHHhhcccceEEEecchhhHHHHHHHHHHcCCcEEEeecccCCH
Confidence 3447777777777777 333 332 2 22 223323344789999999999999999988763
Q ss_pred -----CC----hhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHH
Q 026320 78 -----IP----EETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLE 147 (240)
Q Consensus 78 -----l~----~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLe 147 (240)
|. .+.=.+=|+.|.+.||. ||--.-+.-+ + +..++...++-.-+
T Consensus 125 e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kg---v-----------------------Nd~ei~~l~e~~~~ 178 (322)
T COG2896 125 EKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKG---V-----------------------NDDEIEDLLEFAKE 178 (322)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecC---C-----------------------CHHHHHHHHHHHhh
Confidence 22 12334567899999997 7776666422 1 23566667777779
Q ss_pred cCCcEEEEecc
Q 026320 148 AGADMIMIDSD 158 (240)
Q Consensus 148 AGA~~ViiEar 158 (240)
-|+..=+||=.
T Consensus 179 ~~~~lrfIE~m 189 (322)
T COG2896 179 RGAQLRFIELM 189 (322)
T ss_pred cCCceEEEEEe
Confidence 99999999976
No 200
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=84.84 E-value=1.7 Score=40.32 Aligned_cols=78 Identities=21% Similarity=0.282 Sum_probs=41.7
Q ss_pred ccccccChhHHHHHHHHHHhC---Cc----eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc------CC
Q 026320 13 GSHSLMPKPFIEEVVKRAHQH---DV----YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE------IP 79 (240)
Q Consensus 13 GTs~l~p~~~l~eKi~l~~~~---gV----~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~------l~ 79 (240)
|.+..-..+.+.+.++-.|+. ++ ++.+..+.+..+. ++..-++.+.+.+.|.++||||.|..+ ++
T Consensus 197 Ggsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~--~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~ 274 (336)
T cd02932 197 GGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWD--LEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVG 274 (336)
T ss_pred CCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCC--HHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCC
Confidence 334444445566777777754 32 3333222211111 113445666777889999999988542 22
Q ss_pred hhHHHHHHHHHHH
Q 026320 80 EETLLRYVRLVKS 92 (240)
Q Consensus 80 ~~~r~~lI~~~~~ 92 (240)
......+.+.+++
T Consensus 275 ~~~~~~~~~~ir~ 287 (336)
T cd02932 275 PGYQVPFAERIRQ 287 (336)
T ss_pred ccccHHHHHHHHh
Confidence 3333456666665
No 201
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=84.84 E-value=6.8 Score=39.22 Aligned_cols=143 Identities=12% Similarity=0.128 Sum_probs=89.5
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCCcee----c-CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV----S-TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP 79 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v----~-~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~ 79 (240)
||++-+.-..+-+ +.++.-++.++++|-.+ | +++- ...++.+.++.+.+.+.|.+.|=|.|-.--+.
T Consensus 111 idi~RIfd~lndv---~nl~~ai~~vk~ag~~~~~~i~yt~sp-----~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~ 182 (499)
T PRK12330 111 MDVFRVFDALNDP---RNLEHAMKAVKKVGKHAQGTICYTVSP-----IHTVEGFVEQAKRLLDMGADSICIKDMAALLK 182 (499)
T ss_pred CCEEEEEecCChH---HHHHHHHHHHHHhCCeEEEEEEEecCC-----CCCHHHHHHHHHHHHHcCCCEEEeCCCccCCC
Confidence 4444444333333 45666666666666533 1 2221 12334566667777888999999999999999
Q ss_pred hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccc
Q 026320 80 EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD 159 (240)
Q Consensus 80 ~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarg 159 (240)
+.+-.++|+.+++. +...-.+++.+ + .|...-+-.....++|||+.|=.=-.|
T Consensus 183 P~~~~~LV~~Lk~~-~~~~ipI~~H~-H-------------------------nt~GlA~An~laAieAGad~vDtai~G 235 (499)
T PRK12330 183 PQPAYDIVKGIKEA-CGEDTRINLHC-H-------------------------STTGVTLVSLMKAIEAGVDVVDTAISS 235 (499)
T ss_pred HHHHHHHHHHHHHh-CCCCCeEEEEe-C-------------------------CCCCcHHHHHHHHHHcCCCEEEeeccc
Confidence 99999999999874 10012244432 1 122334667777899999964333348
Q ss_pred cccCCCCccHHHHHHHHhccCCC
Q 026320 160 VCKHADSLRADIIAKVIGRLGLE 182 (240)
Q Consensus 160 i~d~~g~~r~d~v~~i~~~~~~~ 182 (240)
+=...|+..++.+-..++..+.+
T Consensus 236 lg~~aGn~atE~vv~~L~~~g~~ 258 (499)
T PRK12330 236 MSLGPGHNPTESLVEMLEGTGYT 258 (499)
T ss_pred ccccccchhHHHHHHHHHhcCCC
Confidence 87778988888777777666643
No 202
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=84.69 E-value=7.8 Score=35.75 Aligned_cols=77 Identities=21% Similarity=0.339 Sum_probs=49.0
Q ss_pred HHHHHcCCCEEEecC----------CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 026320 59 EDCKQVGFDTIELNV----------GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 128 (240)
Q Consensus 59 ~~~k~lGF~~IEISd----------Gti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 128 (240)
..+.+.|+|.|=|.| .|++++-++.....+.+++ |.++..- -.|=.|+.+-
T Consensus 30 ~~~d~agvD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~R---------ga~~~~v----v~DmPf~sy~------ 90 (261)
T PF02548_consen 30 RIADEAGVDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRR---------GAPNAFV----VADMPFGSYQ------ 90 (261)
T ss_dssp HHHHHTT-SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHH---------H-TSSEE----EEE--TTSST------
T ss_pred HHHHHcCCCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHh---------cCCCceE----EecCCccccc------
Confidence 455677888888864 6889999999887777766 3332210 1122233321
Q ss_pred cccccCHHHHHHHHHHHHH-cCCcEEEEecc
Q 026320 129 TEYVEDVDLLIRRAERCLE-AGADMIMIDSD 158 (240)
Q Consensus 129 ~~~~~~~~~~i~~~~~dLe-AGA~~ViiEar 158 (240)
.++++.++.+.|.+. +||+.|-+|+.
T Consensus 91 ----~s~e~av~nA~rl~ke~GadaVKlEGg 117 (261)
T PF02548_consen 91 ----ASPEQAVRNAGRLMKEAGADAVKLEGG 117 (261)
T ss_dssp ----SSHHHHHHHHHHHHHTTT-SEEEEEBS
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEeccc
Confidence 268999999999999 99999999983
No 203
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=84.57 E-value=1.4 Score=38.86 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=35.2
Q ss_pred HHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 026320 46 LIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 99 (240)
Q Consensus 46 a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~ 99 (240)
.+.+. .+++.++.+++.||+.||+.. ...+ +..++-+.+++.|+++..
T Consensus 11 ~~~~~--~l~~~l~~~a~~Gf~~VEl~~-~~~~---~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 11 LFGEY--DFLARFEKAAQCGFRGVEFMF-PYDY---DIEELKQVLASNKLEHTL 58 (258)
T ss_pred hccCC--CHHHHHHHHHHhCCCEEEEcC-CCCC---CHHHHHHHHHHcCCcEEE
Confidence 34455 799999999999999999954 2222 345666677789999743
No 204
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=84.56 E-value=12 Score=33.38 Aligned_cols=99 Identities=16% Similarity=0.206 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc-CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLE-IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 131 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~-l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 131 (240)
...+..+...+.|++.+=|-|=+-. .....-.++|+++++. .++-+..+. |
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~-----~~~pv~~~G-----------------------G 82 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAET-----VFIPLTVGG-----------------------G 82 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHh-----cCCCEEEEC-----------------------C
Confidence 4556666777899999988776644 2455556788888773 112222111 1
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecC
Q 026320 132 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 189 (240)
Q Consensus 132 ~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifEAP 189 (240)
..+ .+.+++.+.+||+.|++ ++.... +++++.++.+..|.+++++--+
T Consensus 83 i~s----~~d~~~~~~~Ga~~viv-gt~~~~-----~p~~~~~~~~~~~~~~iv~slD 130 (254)
T TIGR00735 83 IKS----IEDVDKLLRAGADKVSI-NTAAVK-----NPELIYELADRFGSQCIVVAID 130 (254)
T ss_pred CCC----HHHHHHHHHcCCCEEEE-ChhHhh-----ChHHHHHHHHHcCCCCEEEEEE
Confidence 123 67777888999999999 555544 3678899988888888887554
No 205
>PRK15108 biotin synthase; Provisional
Probab=84.47 E-value=7 Score=36.82 Aligned_cols=133 Identities=17% Similarity=0.252 Sum_probs=80.5
Q ss_pred ccccChhHHHHHHHHHHhCCc-eecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHH
Q 026320 15 HSLMPKPFIEEVVKRAHQHDV-YVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKS 92 (240)
Q Consensus 15 s~l~p~~~l~eKi~l~~~~gV-~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~ 92 (240)
..+++.+.+.++...+.+.|+ .++.| +|.+- ....-+.+.+-++.+|+.|...+ +|.|. ++. +..++.++
T Consensus 73 ~~~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p-~~~~~e~i~~~i~~ik~~~i~v~-~s~G~--ls~----e~l~~Lke 144 (345)
T PRK15108 73 ERLMEVEQVLESARKAKAAGSTRFCMGAAWKNP-HERDMPYLEQMVQGVKAMGLETC-MTLGT--LSE----SQAQRLAN 144 (345)
T ss_pred ccCCCHHHHHHHHHHHHHcCCCEEEEEecCCCC-CcchHHHHHHHHHHHHhCCCEEE-EeCCc--CCH----HHHHHHHH
Confidence 345677778888999999999 55554 34221 11111246666777788887655 88885 443 34566778
Q ss_pred cCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHH
Q 026320 93 AGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADII 172 (240)
Q Consensus 93 ~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v 172 (240)
+|+... ++.- |+ ++.+.+.+.+ ..+.+++++.+++..++|- -+-+-+|+-- |+..+|.+
T Consensus 145 AGld~~---n~~l---eT----~p~~f~~I~~-------~~~~~~rl~~i~~a~~~G~---~v~sg~i~Gl-gEt~ed~v 203 (345)
T PRK15108 145 AGLDYY---NHNL---DT----SPEFYGNIIT-------TRTYQERLDTLEKVRDAGI---KVCSGGIVGL-GETVKDRA 203 (345)
T ss_pred cCCCEE---eecc---cc----ChHhcCCCCC-------CCCHHHHHHHHHHHHHcCC---ceeeEEEEeC-CCCHHHHH
Confidence 887732 2211 01 1111111111 1367999999999999995 2233345654 88888988
Q ss_pred HHHH
Q 026320 173 AKVI 176 (240)
Q Consensus 173 ~~i~ 176 (240)
+-+.
T Consensus 204 ~~~~ 207 (345)
T PRK15108 204 GLLL 207 (345)
T ss_pred HHHH
Confidence 8775
No 206
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=84.25 E-value=25 Score=33.11 Aligned_cols=116 Identities=23% Similarity=0.275 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhCCceec-----CCcHHHH--------------------HHHhC--CchHHHHHH---HHHHcCCCEEEe
Q 026320 22 FIEEVVKRAHQHDVYVS-----TGDWAEH--------------------LIRNG--PSAFKEYVE---DCKQVGFDTIEL 71 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~-----~Gtl~E~--------------------a~~qg--~~~~~~yl~---~~k~lGF~~IEI 71 (240)
.+++.++.+|+||-.++ +|.+.+. ++... ..-+++|.+ .|++.|||.|||
T Consensus 82 ~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVei 161 (337)
T PRK13523 82 GLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEI 161 (337)
T ss_pred HHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 68889999999998653 2433210 00000 012444544 566779999999
Q ss_pred cCCc-------c-c-C---------ChhHHHHH----HHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 026320 72 NVGS-------L-E-I---------PEETLLRY----VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 129 (240)
Q Consensus 72 SdGt-------i-~-l---------~~~~r~~l----I~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 129 (240)
.-|- + + . +.+.|.|+ |+.+++. +-.-+++|-...+.. +
T Consensus 162 h~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~---~~~~v~vRis~~d~~------------~----- 221 (337)
T PRK13523 162 HGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEV---WDGPLFVRISASDYH------------P----- 221 (337)
T ss_pred ccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHh---cCCCeEEEecccccC------------C-----
Confidence 8772 1 1 1 34555554 4444443 111256654322211 0
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 130 EYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 130 ~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
+--++++.++.++..-++|+|+|-|=++
T Consensus 222 -~G~~~~e~~~i~~~l~~~gvD~i~vs~g 249 (337)
T PRK13523 222 -GGLTVQDYVQYAKWMKEQGVDLIDVSSG 249 (337)
T ss_pred -CCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 0114688888888888899999998554
No 207
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=84.17 E-value=21 Score=32.15 Aligned_cols=121 Identities=20% Similarity=0.168 Sum_probs=71.2
Q ss_pred ChhHHHHHHHHHHhCCc-eecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------------ccCChhH
Q 026320 19 PKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------------LEIPEET 82 (240)
Q Consensus 19 p~~~l~eKi~l~~~~gV-~v~~G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------------i~l~~~~ 82 (240)
|++.+.+-+..+++... .+.-| +.=|+... .+.+.+ +++.|||+-|. +--.++.
T Consensus 53 ~~~~i~~e~~~~~~~~~vivnv~~~~~ee~~~~---------a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~ 122 (231)
T TIGR00736 53 FNSYIIEQIKKAESRALVSVNVRFVDLEEAYDV---------LLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKEL 122 (231)
T ss_pred HHHHHHHHHHHHhhcCCEEEEEecCCHHHHHHH---------HHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHH
Confidence 45677777777764443 22223 22222211 122223 79999999887 3336667
Q ss_pred HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecccccc
Q 026320 83 LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK 162 (240)
Q Consensus 83 r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d 162 (240)
-.++++.+++.+ +| +.+|-... | +....++.++...++||+.|.|+++ |.
T Consensus 123 l~~iv~av~~~~---~P-VsvKiR~~------------------~------~~~~~~~~a~~l~~aGad~i~Vd~~--~~ 172 (231)
T TIGR00736 123 LKEFLTKMKELN---KP-IFVKIRGN------------------C------IPLDELIDALNLVDDGFDGIHVDAM--YP 172 (231)
T ss_pred HHHHHHHHHcCC---Cc-EEEEeCCC------------------C------CcchHHHHHHHHHHcCCCEEEEeeC--CC
Confidence 778888888543 23 66664321 1 1234567788888999999999753 32
Q ss_pred CCCCccHHHHHHHHhcc
Q 026320 163 HADSLRADIIAKVIGRL 179 (240)
Q Consensus 163 ~~g~~r~d~v~~i~~~~ 179 (240)
..+....+.|.++.+.+
T Consensus 173 g~~~a~~~~I~~i~~~~ 189 (231)
T TIGR00736 173 GKPYADMDLLKILSEEF 189 (231)
T ss_pred CCchhhHHHHHHHHHhc
Confidence 22225566676666544
No 208
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=84.04 E-value=4.7 Score=35.69 Aligned_cols=68 Identities=16% Similarity=0.288 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
...+..+.+.+-|++.|||.- ..+...+.|+++++.. |++-+ |+ |..++
T Consensus 21 ~a~~~~~al~~~Gi~~iEit~-----~t~~a~~~i~~l~~~~----~~~~v-------GA------GTVl~--------- 69 (204)
T TIGR01182 21 DALPLAKALIEGGLRVLEVTL-----RTPVALDAIRLLRKEV----PDALI-------GA------GTVLN--------- 69 (204)
T ss_pred HHHHHHHHHHHcCCCEEEEeC-----CCccHHHHHHHHHHHC----CCCEE-------EE------EeCCC---------
Confidence 455667888999999999976 4466778999998741 22222 10 22233
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
.+++++.++|||++++-=+
T Consensus 70 ------~~~a~~a~~aGA~FivsP~ 88 (204)
T TIGR01182 70 ------PEQLRQAVDAGAQFIVSPG 88 (204)
T ss_pred ------HHHHHHHHHcCCCEEECCC
Confidence 6788999999999998544
No 209
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=84.03 E-value=9.4 Score=35.79 Aligned_cols=124 Identities=19% Similarity=0.254 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-----------CChhHHHHH
Q 026320 21 PFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-----------IPEETLLRY 86 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~-----------l~~~~r~~l 86 (240)
+.+..-=++...-+++|.- .||-+ + . .+-+.++.+.+.|.-.|-|-|-... +|.++.++-
T Consensus 65 e~~~~vrrI~~a~~lPv~vD~dtGfG~-~--~---nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~r 138 (289)
T COG2513 65 EVLADARRITDAVDLPVLVDIDTGFGE-A--L---NVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDR 138 (289)
T ss_pred HHHHHHHHHHhhcCCceEEeccCCCCc-H--H---HHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHH
Confidence 3444445566666776663 24655 2 1 5677888899999998888776664 888888888
Q ss_pred HHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCC
Q 026320 87 VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADS 166 (240)
Q Consensus 87 I~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~ 166 (240)
|+.+++. ...++|-+-- .-|. +. ..-.++-|++++..+|||||.|-.|+. ..
T Consensus 139 IkAa~~a--~~~~~fvi~A-------RTda----------~~---~~~ld~AI~Ra~AY~eAGAD~if~~al------~~ 190 (289)
T COG2513 139 IKAAVEA--RRDPDFVIIA-------RTDA----------LL---VEGLDDAIERAQAYVEAGADAIFPEAL------TD 190 (289)
T ss_pred HHHHHHh--ccCCCeEEEe-------ehHH----------HH---hccHHHHHHHHHHHHHcCCcEEccccC------CC
Confidence 8888875 2225565521 1111 11 112688999999999999999999996 11
Q ss_pred ccHHHHHHHHhccC
Q 026320 167 LRADIIAKVIGRLG 180 (240)
Q Consensus 167 ~r~d~v~~i~~~~~ 180 (240)
.+.+.++.+.++
T Consensus 191 --~e~i~~f~~av~ 202 (289)
T COG2513 191 --LEEIRAFAEAVP 202 (289)
T ss_pred --HHHHHHHHHhcC
Confidence 556666666555
No 210
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=83.93 E-value=3.9 Score=35.97 Aligned_cols=69 Identities=20% Similarity=0.321 Sum_probs=45.9
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 131 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 131 (240)
+...+..+.+.+-|+.+|||.--| +...+.|+.+++. .|++-+ |+ |..++
T Consensus 20 ~~a~~~~~al~~gGi~~iEiT~~t-----~~a~~~I~~l~~~----~p~~~v-------GA------GTV~~-------- 69 (196)
T PF01081_consen 20 EDAVPIAEALIEGGIRAIEITLRT-----PNALEAIEALRKE----FPDLLV-------GA------GTVLT-------- 69 (196)
T ss_dssp GGHHHHHHHHHHTT--EEEEETTS-----TTHHHHHHHHHHH----HTTSEE-------EE------ES--S--------
T ss_pred HHHHHHHHHHHHCCCCEEEEecCC-----ccHHHHHHHHHHH----CCCCee-------EE------EeccC--------
Confidence 356677788899999999997654 4567899988774 233333 10 22222
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 132 VEDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 132 ~~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
.+++++.++|||++++-=+
T Consensus 70 -------~e~a~~a~~aGA~FivSP~ 88 (196)
T PF01081_consen 70 -------AEQAEAAIAAGAQFIVSPG 88 (196)
T ss_dssp -------HHHHHHHHHHT-SEEEESS
T ss_pred -------HHHHHHHHHcCCCEEECCC
Confidence 7899999999999999765
No 211
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=83.82 E-value=28 Score=32.32 Aligned_cols=109 Identities=13% Similarity=0.147 Sum_probs=73.7
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHH----HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcc
Q 026320 55 KEYVEDCKQVGFDTIELNVGSLEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 130 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGti~l~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~ 130 (240)
-+.+..|-+.||+-|=+.--.+ |.++= +++++.|+..|.-|--|+|.=-+ .+-+...+.. ....
T Consensus 87 ~e~i~~ai~~GftSVMiDgS~l--p~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg-~e~~~~~~~~-~~~~-------- 154 (284)
T PRK12737 87 LDDIKKKVRAGIRSVMIDGSHL--SFEENIAIVKEVVEFCHRYDASVEAELGRLGG-QEDDLVVDEK-DAMY-------- 154 (284)
T ss_pred HHHHHHHHHcCCCeEEecCCCC--CHHHHHHHHHHHHHHHHHcCCEEEEEEeeccC-ccCCcccccc-cccC--------
Confidence 3677888999999999875554 44443 36778888899999999998421 1111000000 0011
Q ss_pred cccCHHHHHHHHHHHHHcCCcEEEEec---cccccCCCCccHHHHHHHHhccC
Q 026320 131 YVEDVDLLIRRAERCLEAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 131 ~~~~~~~~i~~~~~dLeAGA~~ViiEa---rgi~d~~g~~r~d~v~~i~~~~~ 180 (240)
.||++..+.+++ -|+|.+-+== -|+|...-+++-+.+++|-+.++
T Consensus 155 --T~peeA~~Fv~~---TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~ 202 (284)
T PRK12737 155 --TNPDAAAEFVER---TGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVS 202 (284)
T ss_pred --CCHHHHHHHHHH---hCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhC
Confidence 267777777764 6888776643 39998888899999999988665
No 212
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=83.76 E-value=4.8 Score=33.39 Aligned_cols=14 Identities=14% Similarity=0.271 Sum_probs=11.5
Q ss_pred CHHHHHHHHHHHHH
Q 026320 134 DVDLLIRRAERCLE 147 (240)
Q Consensus 134 ~~~~~i~~~~~dLe 147 (240)
++++.++.++++|+
T Consensus 120 ~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 120 PPEVVIADLKKDLN 133 (134)
T ss_pred CHHHHHHHHHHHhc
Confidence 47889999998875
No 213
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=83.35 E-value=9.6 Score=34.74 Aligned_cols=99 Identities=19% Similarity=0.223 Sum_probs=67.6
Q ss_pred HHHHHHHHcCCCEEEecCCccc--------CC----hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 026320 56 EYVEDCKQVGFDTIELNVGSLE--------IP----EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 123 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti~--------l~----~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~ 123 (240)
+=++.+.+.|.+.|-+...+-+ .+ .+.-.+.|+.+++.|++|.--+..-+.. ...
T Consensus 77 ~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~-----~~~-------- 143 (274)
T cd07938 77 RGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGC-----PYE-------- 143 (274)
T ss_pred HHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecC-----CCC--------
Confidence 3478888999999888654433 12 2445567999999999865433332211 000
Q ss_pred cCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 124 RAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 124 ~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
+.-+++.+++.++...++||+.|- +.|..|...+..+.+++..+
T Consensus 144 -------~~~~~~~~~~~~~~~~~~Ga~~i~-----l~DT~G~~~P~~v~~lv~~l 187 (274)
T cd07938 144 -------GEVPPERVAEVAERLLDLGCDEIS-----LGDTIGVATPAQVRRLLEAV 187 (274)
T ss_pred -------CCCCHHHHHHHHHHHHHcCCCEEE-----ECCCCCccCHHHHHHHHHHH
Confidence 011589999999999999998663 67888888888888887644
No 214
>PRK08185 hypothetical protein; Provisional
Probab=83.34 E-value=33 Score=31.84 Aligned_cols=135 Identities=17% Similarity=0.287 Sum_probs=79.0
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHH----HHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 026320 56 EYVEDCKQVGFDTIELNVGSLEIPEETLLRY----VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 131 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti~l~~~~r~~l----I~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 131 (240)
+.++.|-+.||+.|=+..-. +|.++-.++ ++.++..|..|--|+|.- +..+. +...+. . ...
T Consensus 82 e~i~~ai~~Gf~SVM~D~S~--l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~v-g~~e~----~~~~~~--~-----~~~ 147 (283)
T PRK08185 82 EDVMRAIRCGFTSVMIDGSL--LPYEENVALTKEVVELAHKVGVSVEGELGTI-GNTGT----SIEGGV--S-----EII 147 (283)
T ss_pred HHHHHHHHcCCCEEEEeCCC--CCHHHHHHHHHHHHHHHHHcCCeEEEEEeec-cCccc----cccccc--c-----ccc
Confidence 45677788999999886554 566665554 555567899999999882 22111 100000 0 000
Q ss_pred ccCHHHHHHHHHHHHHc-CCcEEEEec---cccccC--CCCccHHHHHHHHhccCCCceEEecC-CchhHHHHHHHhC-C
Q 026320 132 VEDVDLLIRRAERCLEA-GADMIMIDS---DDVCKH--ADSLRADIIAKVIGRLGLEKTMFEAT-NPRTSEWFIRRYG-P 203 (240)
Q Consensus 132 ~~~~~~~i~~~~~dLeA-GA~~ViiEa---rgi~d~--~g~~r~d~v~~i~~~~~~~~lifEAP-~k~qQ~~~I~~fG-~ 203 (240)
..| .++++++.+. |+|++-+== -|+|.. .-+++-+.+.+|.+.++.--++-=.. .+..|.-=.-++| .
T Consensus 148 ~t~----peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~GI~ 223 (283)
T PRK08185 148 YTD----PEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVDIPLVLHGGSANPDAEIAESVQLGVG 223 (283)
T ss_pred CCC----HHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHCCCe
Confidence 114 4555666666 999988733 488977 56788999999987765433333222 2333333233444 3
Q ss_pred Ccccc
Q 026320 204 KVNLF 208 (240)
Q Consensus 204 ~VNLg 208 (240)
.||++
T Consensus 224 KiNi~ 228 (283)
T PRK08185 224 KINIS 228 (283)
T ss_pred EEEeC
Confidence 46664
No 215
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=83.28 E-value=8.3 Score=37.41 Aligned_cols=126 Identities=22% Similarity=0.315 Sum_probs=86.4
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcccCChhH
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLEIPEET 82 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~l~~~~ 82 (240)
.|+-+=||+||-.+++++.|++-++.++++=- ....-.|+.+--+|.. =.+.++.+++.||+ -||=|--++.++.
T Consensus 87 ~v~ti~~GGGTPslL~~~~l~~ll~~l~~~~~--~~~~~~EitiE~nP~~~~~e~~~~l~~~GvN--RiSlGVQsf~~~~ 162 (416)
T COG0635 87 EVKTIYFGGGTPSLLSPEQLERLLKALRELFN--DLDPDAEITIEANPGTVEAEKFKALKEAGVN--RISLGVQSFNDEV 162 (416)
T ss_pred eEEEEEECCCccccCCHHHHHHHHHHHHHhcc--cCCCCceEEEEeCCCCCCHHHHHHHHHcCCC--EEEeccccCCHHH
Confidence 46677799999999999999999999987641 0011134444334443 34677888999999 5666777766554
Q ss_pred ------------HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCC
Q 026320 83 ------------LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 150 (240)
Q Consensus 83 ------------r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA 150 (240)
-...++.+++.||.-+. +-.-.+ .| -+|.+.+.+..+..++.|.
T Consensus 163 lk~lgR~h~~~~~~~a~~~~~~~g~~~in-~DLIyg----------------lP-------~QT~~~~~~~l~~a~~l~p 218 (416)
T COG0635 163 LKALGRIHDEEEAKEAVELARKAGFTSIN-IDLIYG----------------LP-------GQTLESLKEDLEQALELGP 218 (416)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCCcEE-EEeecC----------------CC-------CCCHHHHHHHHHHHHhCCC
Confidence 44567777777666332 222111 12 2368999999999999999
Q ss_pred cEEEEec
Q 026320 151 DMIMIDS 157 (240)
Q Consensus 151 ~~ViiEa 157 (240)
++|=+.+
T Consensus 219 dhis~y~ 225 (416)
T COG0635 219 DHLSLYS 225 (416)
T ss_pred CEEEEee
Confidence 9998877
No 216
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=83.22 E-value=23 Score=33.94 Aligned_cols=59 Identities=15% Similarity=0.075 Sum_probs=41.2
Q ss_pred cCccccccChhHHHHHHHHHHhC-CceecC--CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc
Q 026320 11 SGGSHSLMPKPFIEEVVKRAHQH-DVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE 77 (240)
Q Consensus 11 g~GTs~l~p~~~l~eKi~l~~~~-gV~v~~--Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~ 77 (240)
+.|......++.+.+-++..++. ++++.. .- +...+.+..+.+.+.|.+.|=+.|-+..
T Consensus 144 ~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p--------~~~~~~~~a~~~~~~Gadgi~~~Nt~~~ 205 (420)
T PRK08318 144 GMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTP--------NITDIREPARAAKRGGADAVSLINTINS 205 (420)
T ss_pred CCcccccCCHHHHHHHHHHHHhccCCcEEEEcCC--------CcccHHHHHHHHHHCCCCEEEEecccCc
Confidence 45677778889999999999875 454442 21 1124667777888999999987666654
No 217
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=83.20 E-value=2.9 Score=29.45 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=34.6
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 026320 51 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 99 (240)
Q Consensus 51 ~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~ 99 (240)
....++|++.|++.|+++|=|+|=.---.. .++-+.+++.|++|++
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~---~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHGNLFGA---VEFYKAAKKAGIKPII 59 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCCcccCH---HHHHHHHHHcCCeEEE
Confidence 347899999999999999999997622222 2455666778998887
No 218
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=83.19 E-value=39 Score=31.37 Aligned_cols=138 Identities=13% Similarity=0.143 Sum_probs=82.1
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHH--HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 026320 56 EYVEDCKQVGFDTIELNVGSLEIPEETL--LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 133 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti~l~~~~r--~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 133 (240)
+.+..|-++||+-|=+.--.+++.+-.+ +++++.|+..|.-|--|+|.=-+ .+-+...+. . ...-.
T Consensus 88 e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg-~e~~~~~~~---~--------~~~~T 155 (284)
T PRK09195 88 DDIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGG-QEDDLQVDE---A--------DALYT 155 (284)
T ss_pred HHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccC-cccCccccc---c--------cccCC
Confidence 5677788999999999755544433222 36778888889999999998421 111100000 0 00112
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEec---cccccCCCCccHHHHHHHHhccCCCceEEecC-CchhHHHHHHHhC-CCcccc
Q 026320 134 DVDLLIRRAERCLEAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGLEKTMFEAT-NPRTSEWFIRRYG-PKVNLF 208 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiEa---rgi~d~~g~~r~d~v~~i~~~~~~~~lifEAP-~k~qQ~~~I~~fG-~~VNLg 208 (240)
||++..+.++ +-|+|..-+== -|+|...-+++.|.+++|-+.++.--++==+. .|..|.-=.-+.| ..||++
T Consensus 156 ~peea~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~ 232 (284)
T PRK09195 156 DPAQAREFVE---ATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNIPLVLHGASGLPTKDIQQTIKLGICKVNVA 232 (284)
T ss_pred CHHHHHHHHH---HHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeC
Confidence 6666555555 46888776643 29999888999999999988765322332222 2333332223344 456765
No 219
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=83.19 E-value=33 Score=32.16 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE
Q 026320 134 DVDLLIRRAERCLEAGADMIMI 155 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~Vii 155 (240)
++++.++.+++.-++|+|+|-+
T Consensus 222 ~~~e~~~i~~~Le~~G~d~i~v 243 (353)
T cd02930 222 TWEEVVALAKALEAAGADILNT 243 (353)
T ss_pred CHHHHHHHHHHHHHcCCCEEEe
Confidence 5788888888888899999987
No 220
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=83.12 E-value=17 Score=33.44 Aligned_cols=133 Identities=17% Similarity=0.211 Sum_probs=79.7
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHH----HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 026320 56 EYVEDCKQVGFDTIELNVGSLEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 131 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti~l~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 131 (240)
+.++.|-+.||+.|=+..-.. |.++- .++++.++..|..|--|+|.- + .++|...+.. -.
T Consensus 88 e~i~~ai~~Gf~sVmid~s~l--~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~-g-----g~ed~~~g~~--------~~ 151 (282)
T TIGR01859 88 ESCIKAIKAGFSSVMIDGSHL--PFEENLALTKKVVEIAHAKGVSVEAELGTL-G-----GIEDGVDEKE--------AE 151 (282)
T ss_pred HHHHHHHHcCCCEEEECCCCC--CHHHHHHHHHHHHHHHHHcCCEEEEeeCCC-c-----Cccccccccc--------cc
Confidence 466677788999998876665 44433 356666778898888888772 1 1222111100 00
Q ss_pred ccCHHHHHHHHHHHHH-cCCcEEEEe-c--cccccCCCCccHHHHHHHHhccCCCceEEec-CCchhHHHHHHHhCC-Cc
Q 026320 132 VEDVDLLIRRAERCLE-AGADMIMID-S--DDVCKHADSLRADIIAKVIGRLGLEKTMFEA-TNPRTSEWFIRRYGP-KV 205 (240)
Q Consensus 132 ~~~~~~~i~~~~~dLe-AGA~~ViiE-a--rgi~d~~g~~r~d~v~~i~~~~~~~~lifEA-P~k~qQ~~~I~~fG~-~V 205 (240)
..||++ ++++.+ .|+|++-+= | -|+|.....+.-+.+.+|.+.+++--++-=+ -.+..+.--+.+.|. .|
T Consensus 152 ~t~~ee----a~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~ki 227 (282)
T TIGR01859 152 LADPDE----AEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKI 227 (282)
T ss_pred cCCHHH----HHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 125444 455554 699998864 2 3889888899999999998877533232221 233344443444454 46
Q ss_pred ccc
Q 026320 206 NLF 208 (240)
Q Consensus 206 NLg 208 (240)
|++
T Consensus 228 Nv~ 230 (282)
T TIGR01859 228 NID 230 (282)
T ss_pred EEC
Confidence 665
No 221
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=82.97 E-value=16 Score=38.02 Aligned_cols=111 Identities=18% Similarity=0.190 Sum_probs=85.9
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHH
Q 026320 58 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 137 (240)
Q Consensus 58 l~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 137 (240)
+.+++.+|=|+|=+--..+ +.++..++++.+++.||.|+.|++-
T Consensus 126 I~ea~~~GADavLLI~~~L--~~~~l~~l~~~a~~lGme~LvEvh~---------------------------------- 169 (695)
T PRK13802 126 IWEARAHGADLVLLIVAAL--DDAQLKHLLDLAHELGMTVLVETHT---------------------------------- 169 (695)
T ss_pred HHHHHHcCCCEeehhHhhc--CHHHHHHHHHHHHHcCCeEEEEeCC----------------------------------
Confidence 6789999999998877766 4778899999999999999999876
Q ss_pred HHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCce-EEecCCc-hhHHHHHHHhCCCccc
Q 026320 138 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEATNP-RTSEWFIRRYGPKVNL 207 (240)
Q Consensus 138 ~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~l-ifEAP~k-~qQ~~~I~~fG~~VNL 207 (240)
-+.+++.+++||..|-|=.|.+..- ++..+.-.+|+..+|-+.+ |-|.=-+ ..+...+++.|.|-=|
T Consensus 170 -~~el~~a~~~ga~iiGINnRdL~tf--~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davL 238 (695)
T PRK13802 170 -REEIERAIAAGAKVIGINARNLKDL--KVDVNKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVL 238 (695)
T ss_pred -HHHHHHHHhCCCCEEEEeCCCCccc--eeCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEE
Confidence 2456678999999999999966332 4446667778888886655 4455433 4677788888877666
No 222
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=82.90 E-value=5.6 Score=35.93 Aligned_cols=68 Identities=16% Similarity=0.062 Sum_probs=52.8
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCH
Q 026320 56 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 135 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~ 135 (240)
...+.+...|||.|-|.-=--.++.++...+|+.++..|..++--+-- .|
T Consensus 24 ~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~----------~~-------------------- 73 (249)
T TIGR03239 24 ITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPW----------NE-------------------- 73 (249)
T ss_pred HHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCC----------CC--------------------
Confidence 455667789999999999999999999999999999887665432211 11
Q ss_pred HHHHHHHHHHHHcCCcEEEEe
Q 026320 136 DLLIRRAERCLEAGADMIMID 156 (240)
Q Consensus 136 ~~~i~~~~~dLeAGA~~ViiE 156 (240)
-..+++.||+||+-||+=
T Consensus 74 ---~~~i~r~LD~Ga~gIivP 91 (249)
T TIGR03239 74 ---PVIIKRLLDIGFYNFLIP 91 (249)
T ss_pred ---HHHHHHHhcCCCCEEEec
Confidence 245688899999999973
No 223
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=82.89 E-value=2.3 Score=40.04 Aligned_cols=125 Identities=18% Similarity=0.288 Sum_probs=67.4
Q ss_pred ccccChhHHHHHHHHHHhC-----CceecCCcHHHHHHHhCCchHHHH---HHHHHHcCCCEEEecCCcccCC-----hh
Q 026320 15 HSLMPKPFIEEVVKRAHQH-----DVYVSTGDWAEHLIRNGPSAFKEY---VEDCKQVGFDTIELNVGSLEIP-----EE 81 (240)
Q Consensus 15 s~l~p~~~l~eKi~l~~~~-----gV~v~~Gtl~E~a~~qg~~~~~~y---l~~~k~lGF~~IEISdGti~l~-----~~ 81 (240)
|..-....+.|.|+-.|+. +|++++..+.+- | ...+++ .+.+.+.|+|.|+||.|+...+ ..
T Consensus 187 slenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~----G-~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~ 261 (337)
T PRK13523 187 SPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPG----G-LTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPG 261 (337)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCC----C-CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCcc
Confidence 3443445666777666665 345554323221 2 134444 4555556999999999985321 22
Q ss_pred HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcC-CcEEEEecccc
Q 026320 82 TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG-ADMIMIDSDDV 160 (240)
Q Consensus 82 ~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAG-A~~ViiEargi 160 (240)
-...+.+.+++. +++ +..-+| ... | .+.+++.|+.| ||+|++ +|++
T Consensus 262 ~~~~~~~~ik~~-------~~i--pVi~~G--------~i~-----------~----~~~a~~~l~~g~~D~V~~-gR~~ 308 (337)
T PRK13523 262 YQVPFAEHIREH-------ANI--ATGAVG--------LIT-----------S----GAQAEEILQNNRADLIFI-GREL 308 (337)
T ss_pred ccHHHHHHHHhh-------cCC--cEEEeC--------CCC-----------C----HHHHHHHHHcCCCChHHh-hHHH
Confidence 134556666553 111 111111 111 2 36677789887 899877 5543
Q ss_pred ccCCCCccHHHHHHHHhccCCC
Q 026320 161 CKHADSLRADIIAKVIGRLGLE 182 (240)
Q Consensus 161 ~d~~g~~r~d~v~~i~~~~~~~ 182 (240)
.- +++++.++.+.+..+
T Consensus 309 ia-----dP~~~~k~~~~~~~~ 325 (337)
T PRK13523 309 LR-----NPYFPRIAAKELGFE 325 (337)
T ss_pred Hh-----CccHHHHHHHHcCCC
Confidence 32 356677777666643
No 224
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=82.43 E-value=11 Score=34.35 Aligned_cols=147 Identities=20% Similarity=0.255 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhCCce---e-----cC-CcH--HHHHHHh-C-Cc-----hHHHH-HHHHHHcCCCEEEecCCcccCChhH
Q 026320 22 FIEEVVKRAHQHDVY---V-----ST-GDW--AEHLIRN-G-PS-----AFKEY-VEDCKQVGFDTIELNVGSLEIPEET 82 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~---v-----~~-Gtl--~E~a~~q-g-~~-----~~~~y-l~~~k~lGF~~IEISdGti~l~~~~ 82 (240)
...+-...|.++|.. | |. |.+ +..+-.. + |= -+++| +.+++..|=|+|=+-... ++.+.
T Consensus 69 d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~--L~~~~ 146 (254)
T PF00218_consen 69 DPAEIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIAAI--LSDDQ 146 (254)
T ss_dssp SHHHHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-SEEEEEGGG--SGHHH
T ss_pred CHHHHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCCEeehhHHh--CCHHH
Confidence 466677788888762 2 23 332 2222221 1 10 03344 678999999999887654 55677
Q ss_pred HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecccccc
Q 026320 83 LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK 162 (240)
Q Consensus 83 r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d 162 (240)
..++++.+++.||.++.|++- -+.+++.+++||..|-|=.|.+-.
T Consensus 147 l~~l~~~a~~lGle~lVEVh~-----------------------------------~~El~~al~~~a~iiGINnRdL~t 191 (254)
T PF00218_consen 147 LEELLELAHSLGLEALVEVHN-----------------------------------EEELERALEAGADIIGINNRDLKT 191 (254)
T ss_dssp HHHHHHHHHHTT-EEEEEESS-----------------------------------HHHHHHHHHTT-SEEEEESBCTTT
T ss_pred HHHHHHHHHHcCCCeEEEECC-----------------------------------HHHHHHHHHcCCCEEEEeCccccC
Confidence 789999999999999999876 245667789999999999996533
Q ss_pred CCCCccHHHHHHHHhccCCCc-eEEecCCc-hhHHHHHHHhCCCccc
Q 026320 163 HADSLRADIIAKVIGRLGLEK-TMFEATNP-RTSEWFIRRYGPKVNL 207 (240)
Q Consensus 163 ~~g~~r~d~v~~i~~~~~~~~-lifEAP~k-~qQ~~~I~~fG~~VNL 207 (240)
- ++..+...+++..+|.+. +|-|.=-+ ..+...+++.|.|-=|
T Consensus 192 f--~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davL 236 (254)
T PF00218_consen 192 F--EVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVL 236 (254)
T ss_dssp C--CBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEE
T ss_pred c--ccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEE
Confidence 2 344556677888888554 44555433 4677777777776544
No 225
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=82.29 E-value=5.4 Score=36.39 Aligned_cols=76 Identities=22% Similarity=0.377 Sum_probs=51.3
Q ss_pred HHHHcCCCEEEecCC----------cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 026320 60 DCKQVGFDTIELNVG----------SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 129 (240)
Q Consensus 60 ~~k~lGF~~IEISdG----------ti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 129 (240)
.+.+.||++|=+.|+ +..++.++.+..++.+.+ +.+.+. + --|-.|+.+.
T Consensus 27 l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r---------~~~~p~--v--iaD~~fg~y~------- 86 (254)
T cd06557 27 LADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRR---------GAPRAL--V--VADMPFGSYQ------- 86 (254)
T ss_pred HHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHh---------cCCCCe--E--EEeCCCCccc-------
Confidence 345679999976544 346888999998888776 222220 0 0111122222
Q ss_pred ccccCHHHHHHHHHHHHH-cCCcEEEEecc
Q 026320 130 EYVEDVDLLIRRAERCLE-AGADMIMIDSD 158 (240)
Q Consensus 130 ~~~~~~~~~i~~~~~dLe-AGA~~ViiEar 158 (240)
.++++.++.+.+.++ +||+.|-||..
T Consensus 87 ---~~~~~av~~a~r~~~~aGa~aVkiEd~ 113 (254)
T cd06557 87 ---TSPEQALRNAARLMKEAGADAVKLEGG 113 (254)
T ss_pred ---CCHHHHHHHHHHHHHHhCCeEEEEcCc
Confidence 258999999999999 99999999984
No 226
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=82.24 E-value=3.2 Score=37.17 Aligned_cols=91 Identities=15% Similarity=0.105 Sum_probs=56.6
Q ss_pred HHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeee
Q 026320 26 VVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 104 (240)
Q Consensus 26 Ki~l~~~~gV-~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k 104 (240)
-++.+.+++| .+.-+.=.| ..-+..+.+.+-|+++|||.--| ..-.+.|+.+++ +++.+
T Consensus 8 ~~~~l~~~~vi~Vvr~~~~~--------~a~~~~~al~~gGi~~iEiT~~t-----p~a~~~i~~l~~-------~~~~~ 67 (222)
T PRK07114 8 VLTAMKATGMVPVFYHADVE--------VAKKVIKACYDGGARVFEFTNRG-----DFAHEVFAELVK-------YAAKE 67 (222)
T ss_pred HHHHHHhCCEEEEEEcCCHH--------HHHHHHHHHHHCCCCEEEEeCCC-----CcHHHHHHHHHH-------HHHhh
Confidence 3466678888 444454333 34456678899999999997644 334456666654 33333
Q ss_pred cCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 105 FNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 105 ~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
++.--+|+ |..++ .+++++.++|||++++-=+
T Consensus 68 ~p~~~vGa------GTVl~---------------~e~a~~a~~aGA~FiVsP~ 99 (222)
T PRK07114 68 LPGMILGV------GSIVD---------------AATAALYIQLGANFIVTPL 99 (222)
T ss_pred CCCeEEee------EeCcC---------------HHHHHHHHHcCCCEEECCC
Confidence 33222331 22233 6888999999999999755
No 227
>PRK09389 (R)-citramalate synthase; Provisional
Probab=82.21 E-value=19 Score=35.70 Aligned_cols=96 Identities=24% Similarity=0.322 Sum_probs=69.7
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCC--------h----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSLEIP--------E----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 121 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti~l~--------~----~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~ 121 (240)
..+-++.+.+.|.+.|-+...+=++- . +.-.+.|+.+++.|++| +|+..+..
T Consensus 75 ~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v--~~~~ed~~-------------- 138 (488)
T PRK09389 75 VKVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIV--ELSGEDAS-------------- 138 (488)
T ss_pred CHHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEE--EEEEeeCC--------------
Confidence 35568889999999999987665442 2 23345678888888764 44442210
Q ss_pred cccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 026320 122 VARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 122 ~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~ 180 (240)
..+++.+++.++...++||+.|. ++|..|-..+..+.+++..+-
T Consensus 139 ----------r~~~~~l~~~~~~~~~~Ga~~i~-----l~DTvG~~~P~~~~~lv~~l~ 182 (488)
T PRK09389 139 ----------RADLDFLKELYKAGIEAGADRIC-----FCDTVGILTPEKTYELFKRLS 182 (488)
T ss_pred ----------CCCHHHHHHHHHHHHhCCCCEEE-----EecCCCCcCHHHHHHHHHHHH
Confidence 12578889999999999999864 689999999998888886653
No 228
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.12 E-value=23 Score=31.89 Aligned_cols=148 Identities=12% Similarity=0.157 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCC-CccccccccccccC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLE------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIP-SDRDRAFGAYVARA 125 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~------l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg-~~~d~~~~~~~~~~ 125 (240)
.+..-+++++++|++++||--..=. ++.++..++.+.+.++++.+.+ +.+..+.. +. +..|+.
T Consensus 12 ~~~~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~Hapy~-iNlas~~~~-------- 81 (274)
T TIGR00587 12 GLQAAYNRAAEIGATAFMFFLKSPRWWRRPMLEEEVIDWFKAALETNKNLSQI-VLVHAPYL-INLASPDEE-------- 81 (274)
T ss_pred CHHHHHHHHHHhCCCEEEEEecCccccCCCCCCHHHHHHHHHHHHHcCCCCcc-eeccCCee-eecCCCCHH--------
Confidence 5667778889999999999444332 4455554454556777665322 23321111 10 011110
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCC----ccHHHHHHHHhccCCCceEEec---------CCch
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADS----LRADIIAKVIGRLGLEKTMFEA---------TNPR 192 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~----~r~d~v~~i~~~~~~~~lifEA---------P~k~ 192 (240)
-...+++.+.+.++.+-+-||..|.+..--..+...+ .-.+.+.++++...-=+|..|- ..+.
T Consensus 82 ----~r~~sv~~~~~~i~~A~~lga~~vv~H~G~~~~~~~e~~~~~~~~~l~~l~~~~~~v~l~lEN~~~~~~~l~~~~~ 157 (274)
T TIGR00587 82 ----KEEKSLDVLDEELKRCELLGIMLYNFHPGSALKCSEEEGLDNLIESLNVVIKETKIVTILLENMAGQGSELGRSFE 157 (274)
T ss_pred ----HHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHhccCCCEEEEEeCCCCCCccCCCHH
Confidence 1123467777777777788999999987322221000 0112233344322223588883 2566
Q ss_pred hHHHHHHHhC--CCcccccCCCCc
Q 026320 193 TSEWFIRRYG--PKVNLFVDHSQV 214 (240)
Q Consensus 193 qQ~~~I~~fG--~~VNLgI~~~dV 214 (240)
+-..+++.++ |++-+.+|..++
T Consensus 158 el~~ll~~~~~~~~lg~~lDt~H~ 181 (274)
T TIGR00587 158 ELAYIIKVIVDKRRIGVCLDTCHF 181 (274)
T ss_pred HHHHHHHhcCCCCceEEEEEhhhH
Confidence 6789999998 444333554443
No 229
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=81.91 E-value=15 Score=32.60 Aligned_cols=99 Identities=18% Similarity=0.230 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc-CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLE-IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 131 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~-l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 131 (240)
...+..+.+.+.|++.+=|-|=+-+ .....-.++|+++++. + .+-+..+. |
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~---~--~ipv~~~G-----------------------G 82 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQ---V--FIPLTVGG-----------------------G 82 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHh---C--CCCEEeeC-----------------------C
Confidence 4555666677899999988877753 3445556788888773 1 11121110 1
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecC
Q 026320 132 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 189 (240)
Q Consensus 132 ~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifEAP 189 (240)
..+ .+.+++.+++||+.|++ +++.+. +++.+.++.+.+|.+++++=.+
T Consensus 83 i~s----~~~~~~~l~~Ga~~Vii-gt~~l~-----~p~~~~ei~~~~g~~~iv~slD 130 (253)
T PRK02083 83 IRS----VEDARRLLRAGADKVSI-NSAAVA-----NPELISEAADRFGSQCIVVAID 130 (253)
T ss_pred CCC----HHHHHHHHHcCCCEEEE-ChhHhh-----CcHHHHHHHHHcCCCCEEEEEE
Confidence 112 56777778899999998 444433 3678999999888888887665
No 230
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=81.88 E-value=27 Score=32.43 Aligned_cols=183 Identities=15% Similarity=0.182 Sum_probs=106.8
Q ss_pred EecCccccccChhHHHHHHHHHHhCCceec----CCc--H----------HHHHHHhC----C-------chHHHHHHHH
Q 026320 9 KFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGD--W----------AEHLIRNG----P-------SAFKEYVEDC 61 (240)
Q Consensus 9 Kfg~GTs~l~p~~~l~eKi~l~~~~gV~v~----~Gt--l----------~E~a~~qg----~-------~~~~~yl~~~ 61 (240)
+++-|.+-+++-+.++.-|+-+.+.+.++. +|+ + +..+..+- | ..=-+.+..|
T Consensus 17 ~yAV~AfN~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~a 96 (285)
T PRK07709 17 KYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEA 96 (285)
T ss_pred CceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHH
Confidence 356667777777777777777777665432 232 1 11111111 0 0112566678
Q ss_pred HHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHH
Q 026320 62 KQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 139 (240)
Q Consensus 62 k~lGF~~IEISdGti~l~~~~--r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i 139 (240)
-++||+-|=+.--.+++.+-. =+++++.|+..|.-|--|+|.=-+ .+|..... . ..-.||++..
T Consensus 97 i~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg------~ed~~~~~---~-----~~yT~peeA~ 162 (285)
T PRK07709 97 IDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGG------QEDDVIAE---G-----VIYADPAECK 162 (285)
T ss_pred HHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCC------ccCCcccc---c-----ccCCCHHHHH
Confidence 889999998865554433322 236778888899999999998421 11210000 0 0012676666
Q ss_pred HHHHHHHHcCCcEEEEec---cccccCCCCccHHHHHHHHhccCCCceEEecC-CchhHHHHHHHhC-CCcccc
Q 026320 140 RRAERCLEAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGLEKTMFEAT-NPRTSEWFIRRYG-PKVNLF 208 (240)
Q Consensus 140 ~~~~~dLeAGA~~ViiEa---rgi~d~~g~~r~d~v~~i~~~~~~~~lifEAP-~k~qQ~~~I~~fG-~~VNLg 208 (240)
+.++ +-|+|.+-+== -|.|...-+++.+.+++|-+.++.--++==+. .|..|.--..++| ..||.+
T Consensus 163 ~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~ 233 (285)
T PRK07709 163 HLVE---ATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINVN 233 (285)
T ss_pred HHHH---HhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 6665 35999877633 28999888999999999988776332332222 3444444334444 456665
No 231
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=81.82 E-value=9.1 Score=35.48 Aligned_cols=87 Identities=20% Similarity=0.329 Sum_probs=64.7
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 133 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 133 (240)
+..-.+..|+-|-++|-+.-| ++..+.|+++.++|.-|.-.+|.--.. + ..+|.+-..- ...+
T Consensus 96 ~~nA~r~~ke~gA~aVKlEGG------~~~~~~i~~L~~~gIPV~gHiGLtPQ~--v-----~~~GGykvqG----r~~~ 158 (268)
T COG0413 96 LKNAARLMKEAGADAVKLEGG------EEMAETIKRLTERGIPVMGHIGLTPQS--V-----NWLGGYKVQG----RTEE 158 (268)
T ss_pred HHHHHHHHHHhCCCEEEEcCC------HHHHHHHHHHHHcCCceEEEecCChhh--h-----hccCCeeeec----CCHH
Confidence 444455667889999999999 778899999999999999999984321 1 1122221111 1124
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEec
Q 026320 134 DVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
+.+++++.++.-=+|||..+.+|.
T Consensus 159 ~a~~l~~dA~ale~AGaf~ivlE~ 182 (268)
T COG0413 159 SAEKLLEDAKALEEAGAFALVLEC 182 (268)
T ss_pred HHHHHHHHHHHHHhcCceEEEEec
Confidence 678999999999999999999998
No 232
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=81.64 E-value=23 Score=35.06 Aligned_cols=149 Identities=13% Similarity=0.123 Sum_probs=96.8
Q ss_pred HHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHc-CCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeee
Q 026320 26 VVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQV-GFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 104 (240)
Q Consensus 26 Ki~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~l-GF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k 104 (240)
-..|.+++|++.+.--|. -|....+++++.+.++ |.. .-.+ .++|.++.....+.-... .|||
T Consensus 253 a~~Le~~~gvp~~~~P~P-----iGi~~Td~fLr~Ia~~~G~~-------pe~l-~~Er~rl~dal~d~~~~L---~GKr 316 (457)
T CHL00073 253 ATTLMRRRKCKLIGAPFP-----IGPDGTRAWIEKICSVFGIE-------PQGL-EEREEQIWESLKDYLDLV---RGKS 316 (457)
T ss_pred HHHHHHHhCCceeecCCc-----CcHHHHHHHHHHHHHHhCcC-------HHHH-HHHHHHHHHHHHHHHHHH---CCCE
Confidence 444557777755442222 4555788888887775 521 2335 677778887777631111 2443
Q ss_pred cCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCcc---HHHHHHHHhccCC
Q 026320 105 FNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLR---ADIIAKVIGRLGL 181 (240)
Q Consensus 105 ~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r---~d~v~~i~~~~~~ 181 (240)
-. =+ -++...+..++-..+.|..-|.+ |....+..+. .+.+.++++..+.
T Consensus 317 va--i~----------------------Gdp~~~i~LarfL~elGmevV~v---gt~~~~~~~~~~d~~~l~~~~~~~~~ 369 (457)
T CHL00073 317 VF--FM----------------------GDNLLEISLARFLIRCGMIVYEI---GIPYMDKRYQAAELALLEDTCRKMNV 369 (457)
T ss_pred EE--EE----------------------CCCcHHHHHHHHHHHCCCEEEEE---EeCCCChhhhHHHHHHHHHHhhhcCC
Confidence 21 01 14567788888899999999988 4443344443 3344455555664
Q ss_pred -CceEEecCCchhHHHHHHHhCCCcccc-cCCCCchhhhh
Q 026320 182 -EKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLEC 219 (240)
Q Consensus 182 -~~lifEAP~k~qQ~~~I~~fG~~VNLg-I~~~dVl~LE~ 219 (240)
..+|.|-++...|..++++..||+=++ + ..-++||+
T Consensus 370 ~~~vive~~D~~el~~~i~~~~pDLlIgG~--~~~~Pl~~ 407 (457)
T CHL00073 370 PMPRIVEKPDNYNQIQRIRELQPDLAITGM--AHANPLEA 407 (457)
T ss_pred CCcEEEeCCCHHHHHHHHhhCCCCEEEccc--cccCchhh
Confidence 578899999999999999999999997 8 56667764
No 233
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=81.62 E-value=3.4 Score=38.53 Aligned_cols=52 Identities=17% Similarity=0.374 Sum_probs=38.5
Q ss_pred chHHHHHHHHHHcCCCEEEe---------cCCcccCC-hhHHHHHHHHHHHcCCcccceeee
Q 026320 52 SAFKEYVEDCKQVGFDTIEL---------NVGSLEIP-EETLLRYVRLVKSAGLKAKPKFAV 103 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEI---------SdGti~l~-~~~r~~lI~~~~~~G~~v~~E~g~ 103 (240)
+...+-++.+|++||++|++ ..|..+.+ ..+..++|+.|+++||.|+--+|-
T Consensus 24 ~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGp 85 (319)
T PF01301_consen 24 EYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPGP 85 (319)
T ss_dssp GGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEES
T ss_pred hHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEecccc
Confidence 46788899999999999987 56888777 456789999999999999877765
No 234
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=81.59 E-value=13 Score=32.64 Aligned_cols=96 Identities=20% Similarity=0.295 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHcCCC---EEEec-CCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 026320 53 AFKEYVEDCKQVGFD---TIELN-VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 128 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~---~IEIS-dGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 128 (240)
...++.+.+.+.|++ .+.+| +|+-. ..-..+|+++++. ++++--. .+
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~---~~~~~~i~~i~~~-------~~~pv~~-----~G-------------- 78 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGR---ETMLDVVERVAEE-------VFIPLTV-----GG-------------- 78 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccC---cccHHHHHHHHHh-------CCCCEEE-----eC--------------
Confidence 566778888899999 55666 33322 2234788888773 2211000 00
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecC
Q 026320 129 TEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 189 (240)
Q Consensus 129 ~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifEAP 189 (240)
+..+ .+.+++.+++||+.|++ +++++. +++.+.++++.++-+++++--.
T Consensus 79 --GI~s----~~d~~~~l~~G~~~v~i-g~~~~~-----~p~~~~~i~~~~~~~~i~~~ld 127 (243)
T cd04731 79 --GIRS----LEDARRLLRAGADKVSI-NSAAVE-----NPELIREIAKRFGSQCVVVSID 127 (243)
T ss_pred --CCCC----HHHHHHHHHcCCceEEE-Cchhhh-----ChHHHHHHHHHcCCCCEEEEEE
Confidence 1112 46667777899999988 666664 3678888888887778885543
No 235
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=81.50 E-value=34 Score=31.20 Aligned_cols=137 Identities=23% Similarity=0.349 Sum_probs=82.1
Q ss_pred ccEEEecCc-cccccC-hhHHHHHHHHHHhC--CceecCCcHHHHHHHhCCchHH--HHHHHHHHcCCCEEEecCC----
Q 026320 5 VDGLKFSGG-SHSLMP-KPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFK--EYVEDCKQVGFDTIELNVG---- 74 (240)
Q Consensus 5 ID~lKfg~G-Ts~l~p-~~~l~eKi~l~~~~--gV~v~~Gtl~E~a~~qg~~~~~--~yl~~~k~lGF~~IEISdG---- 74 (240)
+||+|+|+- +...-. -+.++.-+..++++ +..+..-.|.... .-| .++ +..+.+++.||+.+=|...
T Consensus 81 vdyvKvGl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~-r~~--~~~p~~l~~~a~~aG~~gvMlDTa~Kdg 157 (235)
T PF04476_consen 81 VDYVKVGLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQ-RVG--SISPLDLPEIAAEAGFDGVMLDTADKDG 157 (235)
T ss_pred CCEEEEecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchh-hhc--CCCHHHHHHHHHHcCCCEEEEecccCCC
Confidence 799999953 111100 11233333444433 3455554555533 223 343 4568899999999988643
Q ss_pred -cc--cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCc
Q 026320 75 -SL--EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 151 (240)
Q Consensus 75 -ti--~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~ 151 (240)
++ -++.++..++++.++++|+. .|. ... +. .+.+.+-..-|.|
T Consensus 158 ~~L~d~~~~~~L~~Fv~~ar~~gL~----~aL---AGS------------L~---------------~~di~~L~~l~pD 203 (235)
T PF04476_consen 158 GSLFDHLSEEELAEFVAQARAHGLM----CAL---AGS------------LR---------------FEDIPRLKRLGPD 203 (235)
T ss_pred CchhhcCCHHHHHHHHHHHHHccch----hhc---ccc------------CC---------------hhHHHHHHhcCCC
Confidence 22 68999999999999998765 344 110 11 2333344568888
Q ss_pred EEEEeccccccC----CCCccHHHHHHHHhcc
Q 026320 152 MIMIDSDDVCKH----ADSLRADIIAKVIGRL 179 (240)
Q Consensus 152 ~ViiEargi~d~----~g~~r~d~v~~i~~~~ 179 (240)
++=+=+- +|.. .|.++.+.|.++-+.+
T Consensus 204 ~lGfRGA-vC~ggdR~~G~id~~~V~~lr~~~ 234 (235)
T PF04476_consen 204 ILGFRGA-VCGGGDRRAGRIDPELVAALRALM 234 (235)
T ss_pred EEEechh-hCCCCCcCccccCHHHHHHHHHhc
Confidence 8755332 3444 4789999999886643
No 236
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=81.50 E-value=8.4 Score=34.29 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=16.4
Q ss_pred HHHHHHHHHcCCcEEEEeccccc
Q 026320 139 IRRAERCLEAGADMIMIDSDDVC 161 (240)
Q Consensus 139 i~~~~~dLeAGA~~ViiEargi~ 161 (240)
.++++..+++|||-|++=+ .++
T Consensus 197 ~e~i~~~~~~gaD~vvvGS-ai~ 218 (244)
T PRK13125 197 PEDARDALSAGADGVVVGT-AFI 218 (244)
T ss_pred HHHHHHHHHcCCCEEEECH-HHH
Confidence 3567777899999988854 444
No 237
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=81.38 E-value=8.8 Score=33.65 Aligned_cols=77 Identities=25% Similarity=0.173 Sum_probs=49.6
Q ss_pred ecCccccccChhHHHHHHHHHHhCCceec--------------CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC-
Q 026320 10 FSGGSHSLMPKPFIEEVVKRAHQHDVYVS--------------TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG- 74 (240)
Q Consensus 10 fg~GTs~l~p~~~l~eKi~l~~~~gV~v~--------------~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdG- 74 (240)
+..|+..+.+++.+++..+.+++..|.++ +=+|.+. ......++.+.+.+.|++.|.+++=
T Consensus 97 v~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~----~~~~~~~~~~~l~~~G~d~i~v~~i~ 172 (243)
T cd04731 97 VSINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKP----TGLDAVEWAKEVEELGAGEILLTSMD 172 (243)
T ss_pred EEECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCcee----cCCCHHHHHHHHHHCCCCEEEEeccC
Confidence 45678888888888888777765445433 1124332 1235678889999999999999652
Q ss_pred ---cccCChhHHHHHHHHHHHc
Q 026320 75 ---SLEIPEETLLRYVRLVKSA 93 (240)
Q Consensus 75 ---ti~l~~~~r~~lI~~~~~~ 93 (240)
+..-+ ..++++++++.
T Consensus 173 ~~g~~~g~---~~~~i~~i~~~ 191 (243)
T cd04731 173 RDGTKKGY---DLELIRAVSSA 191 (243)
T ss_pred CCCCCCCC---CHHHHHHHHhh
Confidence 22222 24667777663
No 238
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=81.18 E-value=4.7 Score=35.68 Aligned_cols=68 Identities=24% Similarity=0.197 Sum_probs=43.1
Q ss_pred chHHHHHHHHHHcCCCEEEe--cCCcccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCC
Q 026320 52 SAFKEYVEDCKQVGFDTIEL--NVGSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 128 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEI--SdGti~l~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 128 (240)
+....|...|+.+|++.|=+ .+|+...-. .++|+++++. ...+.-=+|+
T Consensus 134 e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~---~e~i~~Vk~~~~~Pv~vGGGI------------------------- 185 (205)
T TIGR01769 134 EIAAAYCLAAKYFGMKWVYLEAGSGASYPVN---PETISLVKKASGIPLIVGGGI------------------------- 185 (205)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCCCCCCC---HHHHHHHHHhhCCCEEEeCCC-------------------------
Confidence 45788999999999996654 455632233 4566666653 2222222222
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEE
Q 026320 129 TEYVEDVDLLIRRAERCLEAGADMIMI 155 (240)
Q Consensus 129 ~~~~~~~~~~i~~~~~dLeAGA~~Vii 155 (240)
+| .++++.-+++|||.|++
T Consensus 186 ----rs----~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 186 ----RS----PEIAYEIVLAGADAIVT 204 (205)
T ss_pred ----CC----HHHHHHHHHcCCCEEEe
Confidence 12 46777778999999987
No 239
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=81.15 E-value=21 Score=33.21 Aligned_cols=94 Identities=14% Similarity=0.167 Sum_probs=54.4
Q ss_pred HHHHHcCCCEEEecCCccc------------C-ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccC
Q 026320 59 EDCKQVGFDTIELNVGSLE------------I-PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 125 (240)
Q Consensus 59 ~~~k~lGF~~IEISdGti~------------l-~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 125 (240)
+.+.+.||+.|||+=|.=. + .++.-.++++.+++. .. +| +++|-.. |
T Consensus 84 ~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a-~d-~p-v~vKiR~---G-------------- 143 (321)
T PRK10415 84 RINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNA-VD-VP-VTLKIRT---G-------------- 143 (321)
T ss_pred HHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHh-cC-Cc-eEEEEEc---c--------------
Confidence 3445689999999998631 1 134445666666553 11 12 5555421 1
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEecc---ccccCCCCccHHHHHHHHhcc
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD---DVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar---gi~d~~g~~r~d~v~~i~~~~ 179 (240)
|. .+..+.++.++..-++|++.|.+-+| +.|.. ....+.+.++.+.+
T Consensus 144 -~~----~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G--~a~~~~i~~ik~~~ 193 (321)
T PRK10415 144 -WA----PEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNG--EAEYDSIRAVKQKV 193 (321)
T ss_pred -cc----CCcchHHHHHHHHHHhCCCEEEEecCccccccCC--CcChHHHHHHHHhc
Confidence 11 01234567777778999999999998 34433 33345566555433
No 240
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=80.86 E-value=7.9 Score=38.80 Aligned_cols=97 Identities=14% Similarity=0.206 Sum_probs=68.7
Q ss_pred HHHHHHHHHcCCCEEEecCCcc--------cCChhHHH----HHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 026320 55 KEYVEDCKQVGFDTIELNVGSL--------EIPEETLL----RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 122 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGti--------~l~~~~r~----~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 122 (240)
+.-++.+.+.|.+.|-|...+- .++.++=+ +.|+.+++.|+.|. |.-.+-. | .
T Consensus 84 d~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~--~~~e~f~-------D----~-- 148 (526)
T TIGR00977 84 DKMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVI--YDAEHFF-------D----G-- 148 (526)
T ss_pred HHHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE--EEeeeee-------e----c--
Confidence 5678888999999999866553 33444433 34788899888763 4432100 1 0
Q ss_pred ccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 123 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 123 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
...+++.+++.++...++||+.|. |+|..|-..+..+.++++.+
T Consensus 149 --------~r~~~~~l~~~~~~a~~aGad~i~-----i~DTvG~~~P~~v~~li~~l 192 (526)
T TIGR00977 149 --------YKANPEYALATLATAQQAGADWLV-----LCDTNGGTLPHEISEITTKV 192 (526)
T ss_pred --------ccCCHHHHHHHHHHHHhCCCCeEE-----EecCCCCcCHHHHHHHHHHH
Confidence 012689999999999999999986 57889999988888887654
No 241
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=80.55 E-value=15 Score=34.20 Aligned_cols=78 Identities=14% Similarity=0.145 Sum_probs=55.2
Q ss_pred EecCccccccChhHHHHHHHHHHhC---Cceec--C-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC----
Q 026320 9 KFSGGSHSLMPKPFIEEVVKRAHQH---DVYVS--T-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI---- 78 (240)
Q Consensus 9 Kfg~GTs~l~p~~~l~eKi~l~~~~---gV~v~--~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l---- 78 (240)
|-|.|++.+-.++.+.+.++-.++. +++|. . .+|- ..+...++.+.+.+.|.+.|-|+.+|-.=
T Consensus 105 ~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~------~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g 178 (312)
T PRK10550 105 GSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD------SGERKFEIADAVQQAGATELVVHGRTKEDGYRA 178 (312)
T ss_pred cCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC------CchHHHHHHHHHHhcCCCEEEECCCCCccCCCC
Confidence 7788999999999999999988874 35444 2 2341 11245678888999999999999887532
Q ss_pred ChhHHHHHHHHHHHc
Q 026320 79 PEETLLRYVRLVKSA 93 (240)
Q Consensus 79 ~~~~r~~lI~~~~~~ 93 (240)
+.-++ +.|++++++
T Consensus 179 ~~~~~-~~i~~ik~~ 192 (312)
T PRK10550 179 EHINW-QAIGEIRQR 192 (312)
T ss_pred CcccH-HHHHHHHhh
Confidence 11133 778888874
No 242
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=80.49 E-value=13 Score=31.20 Aligned_cols=80 Identities=19% Similarity=0.129 Sum_probs=46.5
Q ss_pred CcccEEEecCccccccChhHHHHHHHHHHhC--CceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC
Q 026320 3 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP 79 (240)
Q Consensus 3 ~yID~lKfg~GTs~l~p~~~l~eKi~l~~~~--gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~ 79 (240)
++||.+|+|+ ...++.. -+-|+..+++ ++++... +.. + --..+++.+.+.|.+.|=+..-+ +
T Consensus 24 ~~i~~ieig~--~~~~~~g--~~~i~~i~~~~~~~~i~~~~~v~------~--~~~~~~~~~~~aGad~i~~h~~~---~ 88 (202)
T cd04726 24 DGVDIIEAGT--PLIKSEG--MEAVRALREAFPDKIIVADLKTA------D--AGALEAEMAFKAGADIVTVLGAA---P 88 (202)
T ss_pred hcCCEEEcCC--HHHHHhC--HHHHHHHHHHCCCCEEEEEEEec------c--ccHHHHHHHHhcCCCEEEEEeeC---C
Confidence 4588888853 2222211 2334444443 5555432 222 2 11234688999999999887654 2
Q ss_pred hhHHHHHHHHHHHcCCcc
Q 026320 80 EETLLRYVRLVKSAGLKA 97 (240)
Q Consensus 80 ~~~r~~lI~~~~~~G~~v 97 (240)
.+.-.++++.++++|.++
T Consensus 89 ~~~~~~~i~~~~~~g~~~ 106 (202)
T cd04726 89 LSTIKKAVKAAKKYGKEV 106 (202)
T ss_pred HHHHHHHHHHHHHcCCeE
Confidence 344567999999987654
No 243
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=80.41 E-value=5.8 Score=35.51 Aligned_cols=75 Identities=23% Similarity=0.192 Sum_probs=51.7
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCccccccccccccCCC
Q 026320 50 GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 127 (240)
Q Consensus 50 g~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~--G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 127 (240)
+|+.+..|-..++.+||..|=+. ++-...+. ++|+++++. +..+.-.+|++
T Consensus 133 ~~e~~~ayA~aae~~g~~ivyLe-~SG~~~~~---e~I~~v~~~~~~~pl~vGGGIr----------------------- 185 (219)
T cd02812 133 KPEDAAAYALAAEYLGMPIVYLE-YSGAYGPP---EVVRAVKKVLGDTPLIVGGGIR----------------------- 185 (219)
T ss_pred CHHHHHHHHHHHHHcCCeEEEeC-CCCCcCCH---HHHHHHHHhcCCCCEEEeCCCC-----------------------
Confidence 34568899999999999988877 54444433 456666553 45555555652
Q ss_pred CcccccCHHHHHHHHHHHHHcCCcEEEEecccccc
Q 026320 128 STEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK 162 (240)
Q Consensus 128 ~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d 162 (240)
+ .+++++.+++|||.|++ +.-+++
T Consensus 186 ------s----~e~a~~l~~aGAD~VVV-Gsai~~ 209 (219)
T cd02812 186 ------S----GEQAKEMAEAGADTIVV-GNIVEE 209 (219)
T ss_pred ------C----HHHHHHHHHcCCCEEEE-CchhhC
Confidence 1 57888889999999999 433444
No 244
>PRK02227 hypothetical protein; Provisional
Probab=80.29 E-value=28 Score=31.75 Aligned_cols=140 Identities=18% Similarity=0.230 Sum_probs=85.5
Q ss_pred ccEEEecCccccccC--hhHHHHHHHHHHhCC--ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC------
Q 026320 5 VDGLKFSGGSHSLMP--KPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG------ 74 (240)
Q Consensus 5 ID~lKfg~GTs~l~p--~~~l~eKi~l~~~~g--V~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdG------ 74 (240)
+||+|.|.--..=.+ .+.++..+...+.+. ..+.+-.|.++--...+ .-.+-.+.+++.||+.+=|...
T Consensus 81 vDyVKvGl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~-~~~~l~~~a~~aGf~g~MlDTa~Kdg~~ 159 (238)
T PRK02227 81 ADYVKVGLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSV-SPLSLPAIAADAGFDGAMLDTAIKDGKS 159 (238)
T ss_pred CCEEEEcCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCC-ChHHHHHHHHHcCCCEEEEecccCCCcc
Confidence 699999963111111 123334444445443 34545556654322221 2346778889999999988643
Q ss_pred -cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEE
Q 026320 75 -SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 153 (240)
Q Consensus 75 -ti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~V 153 (240)
|--|+.++..++++.++++|+. .|. ...+ . .+.+..-..-+.|++
T Consensus 160 Lfd~l~~~~L~~Fv~~ar~~Gl~----~gL---AGSL------------~---------------~~dip~L~~l~pD~l 205 (238)
T PRK02227 160 LFDHMDEEELAEFVAEARSHGLM----SAL---AGSL------------K---------------FEDIPALKRLGPDIL 205 (238)
T ss_pred hHhhCCHHHHHHHHHHHHHcccH----hHh---cccC------------c---------------hhhHHHHHhcCCCEE
Confidence 2269999999999999998665 333 1111 1 233333357788877
Q ss_pred EEeccccc---cCCCCccHHHHHHHHhccC
Q 026320 154 MIDSDDVC---KHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 154 iiEargi~---d~~g~~r~d~v~~i~~~~~ 180 (240)
=+=+- +| |+++.++.+.|.++.+.+.
T Consensus 206 GfRga-vC~g~dR~~~id~~~V~~~~~~l~ 234 (238)
T PRK02227 206 GVRGA-VCGGGDRTGRIDPELVAELREALR 234 (238)
T ss_pred Eechh-ccCCCCcccccCHHHHHHHHHHhh
Confidence 55332 34 5679999999999987665
No 245
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=80.25 E-value=14 Score=32.94 Aligned_cols=93 Identities=12% Similarity=0.203 Sum_probs=58.4
Q ss_pred HHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHH
Q 026320 57 YVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 136 (240)
Q Consensus 57 yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~ 136 (240)
+.+...+.|++.+=|=|=.-......-.++|+++.+.-+. | +-+ +. |..+
T Consensus 35 ~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~--~-v~v--GG-----------------------GIrs-- 84 (232)
T PRK13586 35 IASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFD--W-IQV--GG-----------------------GIRD-- 84 (232)
T ss_pred HHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCC--C-EEE--eC-----------------------CcCC--
Confidence 3444456889888776543333555556888888773221 1 222 10 0112
Q ss_pred HHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEe
Q 026320 137 LLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFE 187 (240)
Q Consensus 137 ~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifE 187 (240)
++.+++.|++||++|++=+.-+. .+++++++++.+|.+++++=
T Consensus 85 --~e~~~~~l~~Ga~kvvigt~a~~------~p~~~~~~~~~~g~~~ivvs 127 (232)
T PRK13586 85 --IEKAKRLLSLDVNALVFSTIVFT------NFNLFHDIVREIGSNRVLVS 127 (232)
T ss_pred --HHHHHHHHHCCCCEEEECchhhC------CHHHHHHHHHHhCCCCEEEE
Confidence 67888889999999998444222 45788888888887887743
No 246
>PRK15452 putative protease; Provisional
Probab=80.24 E-value=35 Score=33.60 Aligned_cols=63 Identities=10% Similarity=0.018 Sum_probs=46.5
Q ss_pred cChhHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHc
Q 026320 18 MPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 93 (240)
Q Consensus 18 ~p~~~l~eKi~l~~~~gV~v~~G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~ 93 (240)
+..+.|++-++++|++|+++|.- ++..-- ... .+.+|++.+.++|+|+|=|+| ..+++.+++.
T Consensus 43 f~~edl~eav~~ah~~g~kvyvt~n~i~~e~-el~--~~~~~l~~l~~~gvDgvIV~d----------~G~l~~~ke~ 107 (443)
T PRK15452 43 FNHENLALGINEAHALGKKFYVVVNIAPHNA-KLK--TFIRDLEPVIAMKPDALIMSD----------PGLIMMVREH 107 (443)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEecCcCCHH-HHH--HHHHHHHHHHhCCCCEEEEcC----------HHHHHHHHHh
Confidence 44567999999999999988753 432211 122 688889999999999999998 3466666665
No 247
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=80.18 E-value=25 Score=32.64 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEe
Q 026320 134 DVDLLIRRAERCLEAGADMIMID 156 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiE 156 (240)
++++.++.++..-++|.++|-+=
T Consensus 239 ~~~e~~~ia~~Le~~gvd~iev~ 261 (336)
T cd02932 239 DLEDSVELAKALKELGVDLIDVS 261 (336)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC
Confidence 47788888888778999988663
No 248
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=80.16 E-value=4.6 Score=38.55 Aligned_cols=83 Identities=24% Similarity=0.242 Sum_probs=55.6
Q ss_pred chHHHHHHHHHHcCCCEEEec---CCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 026320 52 SAFKEYVEDCKQVGFDTIELN---VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 128 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEIS---dGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 128 (240)
..+.+-++++-+-|+|.|=.. ...-.+|.++|.++++.+.+. +..|-|.+-.. -..+
T Consensus 146 ~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~---a~~~TG~~~~y-----------~~ni------ 205 (367)
T cd08205 146 EELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRR---ANEETGRKTLY-----------APNI------ 205 (367)
T ss_pred HHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHH---HHHhhCCcceE-----------EEEc------
Confidence 355666667777899988543 333478999999999998872 22122222110 0001
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 129 TEYVEDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 129 ~~~~~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
..+.++++++++...++||+.||+--
T Consensus 206 ---t~~~~e~i~~a~~a~~~Gad~vmv~~ 231 (367)
T cd08205 206 ---TGDPDELRRRADRAVEAGANALLINP 231 (367)
T ss_pred ---CCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 12469999999999999999999976
No 249
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=80.16 E-value=12 Score=33.01 Aligned_cols=101 Identities=12% Similarity=0.161 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
.--++.+..++.|++.+=|=|=.-....+.-..+|+++.+.= .+.++-+. + .
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~-----~~~v~vgG------G-----------------i 87 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAAW-----PLGLWVDG------G-----------------I 87 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHhC-----CCCEEEec------C-----------------c
Confidence 344555666677999887766543345566677888887730 11222111 1 1
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCch
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPR 192 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifEAP~k~ 192 (240)
.+ ++.+++.|++||++|++=+.-+. + +++.++++++|-+++++=-.-++
T Consensus 88 r~----~edv~~~l~~Ga~~viigt~~~~------~-~~~~~~~~~~~~~~iivslD~~~ 136 (233)
T cd04723 88 RS----LENAQEWLKRGASRVIVGTETLP------S-DDDEDRLAALGEQRLVLSLDFRG 136 (233)
T ss_pred CC----HHHHHHHHHcCCCeEEEcceecc------c-hHHHHHHHhcCCCCeEEEEeccC
Confidence 12 78889999999999999554222 2 46777777776557776555433
No 250
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=80.11 E-value=8.1 Score=34.15 Aligned_cols=68 Identities=18% Similarity=0.226 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
...+..+.+.+-||.+|||.- ......+.|+++++.. +++-+ |+ |..++
T Consensus 17 ~a~~ia~al~~gGi~~iEit~-----~tp~a~~~I~~l~~~~----~~~~v-------GA------GTVl~--------- 65 (201)
T PRK06015 17 HAVPLARALAAGGLPAIEITL-----RTPAALDAIRAVAAEV----EEAIV-------GA------GTILN--------- 65 (201)
T ss_pred HHHHHHHHHHHCCCCEEEEeC-----CCccHHHHHHHHHHHC----CCCEE-------ee------EeCcC---------
Confidence 455677888999999999864 4566778999988742 23322 21 22233
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
.+++++.++|||++++-=+
T Consensus 66 ------~e~a~~ai~aGA~FivSP~ 84 (201)
T PRK06015 66 ------AKQFEDAAKAGSRFIVSPG 84 (201)
T ss_pred ------HHHHHHHHHcCCCEEECCC
Confidence 6788999999999998654
No 251
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=80.02 E-value=50 Score=30.53 Aligned_cols=135 Identities=17% Similarity=0.284 Sum_probs=83.4
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 026320 56 EYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 133 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti~l~~~~--r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 133 (240)
+.+..|-+.||+.|=|.--.+++.+-- =+++++.++..|.-|--|+|.=-+ ..|..... ...-.
T Consensus 83 ~~i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g------~e~~~~~~--------~~~~T 148 (276)
T cd00947 83 ELIKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGG------EEDGVVGD--------EGLLT 148 (276)
T ss_pred HHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecC------ccCCcccc--------cccCC
Confidence 566777899999999976665443322 246788899999999999998422 11110000 01123
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEec---cccccC-CCCccHHHHHHHHhccCCCceEEecC-Cc-hhHHHHHHHhC-CCcc
Q 026320 134 DVDLLIRRAERCLEAGADMIMIDS---DDVCKH-ADSLRADIIAKVIGRLGLEKTMFEAT-NP-RTSEWFIRRYG-PKVN 206 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiEa---rgi~d~-~g~~r~d~v~~i~~~~~~~~lifEAP-~k-~qQ~~~I~~fG-~~VN 206 (240)
||++..+.+++ -|+|.+-+== -|.|.. .-+++.+.+.+|-+.++.--++==+. .+ +|....|+ +| ..||
T Consensus 149 ~pe~a~~Fv~~---TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~-~Gi~KiN 224 (276)
T cd00947 149 DPEEAEEFVEE---TGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIRKAIK-LGVCKIN 224 (276)
T ss_pred CHHHHHHHHHH---HCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHH-cCCeEEE
Confidence 66666655553 4888776654 289988 78899999999998775332333222 23 33333443 44 4566
Q ss_pred cc
Q 026320 207 LF 208 (240)
Q Consensus 207 Lg 208 (240)
++
T Consensus 225 i~ 226 (276)
T cd00947 225 IN 226 (276)
T ss_pred eC
Confidence 65
No 252
>PRK12677 xylose isomerase; Provisional
Probab=80.01 E-value=8.3 Score=37.00 Aligned_cols=144 Identities=15% Similarity=0.188 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---cCChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSL---EIPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 125 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti---~l~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 125 (240)
...+.++.++++||++||+.+..+ +.+..+ ..++-+.+++.|++|..-..-.++.. . -++..| .+|.
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p-~--~~~g~l---ts~d 105 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHP-V--FKDGAF---TSND 105 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCc-c--ccCCcC---CCCC
Confidence 578888999999999999986543 223332 45667777888998543110000000 0 000001 1110
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEe-ccccc--cCCCCcc------HHHHHHHHhc---cCC-CceEEec----
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMID-SDDVC--KHADSLR------ADIIAKVIGR---LGL-EKTMFEA---- 188 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiE-argi~--d~~g~~r------~d~v~~i~~~---~~~-~~lifEA---- 188 (240)
........+.+.+.+.-.-+.||..|.+= ++.-+ +...+++ .+-+.++.+. .|. =+|..|-
T Consensus 106 --~~~R~~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpkp~e 183 (384)
T PRK12677 106 --RDVRRYALRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEPKPNE 183 (384)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCC
Confidence 00111234556666667778899987773 33222 2222211 1223344432 220 1356664
Q ss_pred -------CCchhHHHHHHHhCCC
Q 026320 189 -------TNPRTSEWFIRRYGPK 204 (240)
Q Consensus 189 -------P~k~qQ~~~I~~fG~~ 204 (240)
|...+-..+|+..|..
T Consensus 184 p~~~~~l~t~~~al~li~~lg~~ 206 (384)
T PRK12677 184 PRGDILLPTVGHALAFIATLEHP 206 (384)
T ss_pred CCCCeeeCCHHHHHHHHHHhCCC
Confidence 3344566899999843
No 253
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=79.92 E-value=3.4 Score=37.23 Aligned_cols=127 Identities=22% Similarity=0.347 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHhCCceecC-C--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc------ccCChhHHHHHHHHHH
Q 026320 21 PFIEEVVKRAHQHDVYVST-G--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS------LEIPEETLLRYVRLVK 91 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~v~~-G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt------i~l~~~~r~~lI~~~~ 91 (240)
+.+..-=++++.-++++.- + ||-. .+..+.+-++...+.|.-.|-|-|.- --+|.++...-|+.++
T Consensus 56 e~~~~~~~I~~~~~iPv~vD~d~GyG~-----~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~ 130 (238)
T PF13714_consen 56 EMLAAVRRIARAVSIPVIVDADTGYGN-----DPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAV 130 (238)
T ss_dssp HHHHHHHHHHHHSSSEEEEE-TTTSSS-----SHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCcEEEEcccccCc-----hhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHH
Confidence 3444455566777888874 1 3422 02255666777889999999999881 1358888888888777
Q ss_pred HcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHH
Q 026320 92 SAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADI 171 (240)
Q Consensus 92 ~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~ 171 (240)
+.-= .+.|-+- . .-|. + .. .....++.|++++...+||||.|.+++- ...+.
T Consensus 131 ~a~~--~~~~~I~---A----RTDa-~---~~-------~~~~~deaI~R~~aY~eAGAD~ifi~~~--------~~~~~ 182 (238)
T PF13714_consen 131 DARR--DPDFVII---A----RTDA-F---LR-------AEEGLDEAIERAKAYAEAGADMIFIPGL--------QSEEE 182 (238)
T ss_dssp HHHS--STTSEEE---E----EECH-H---CH-------HHHHHHHHHHHHHHHHHTT-SEEEETTS--------SSHHH
T ss_pred Hhcc--CCeEEEE---E----eccc-c---cc-------CCCCHHHHHHHHHHHHHcCCCEEEeCCC--------CCHHH
Confidence 6300 0112221 1 1111 0 00 1224799999999999999999999975 34566
Q ss_pred HHHHHhccC
Q 026320 172 IAKVIGRLG 180 (240)
Q Consensus 172 v~~i~~~~~ 180 (240)
++++.+.++
T Consensus 183 i~~~~~~~~ 191 (238)
T PF13714_consen 183 IERIVKAVD 191 (238)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 888888887
No 254
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=79.85 E-value=13 Score=32.98 Aligned_cols=118 Identities=16% Similarity=0.193 Sum_probs=71.1
Q ss_pred HHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeee
Q 026320 26 VVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 104 (240)
Q Consensus 26 Ki~l~~~~gV-~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k 104 (240)
.++.+.+++| .+.-+.=.|. ..+..+.+.+-|+..+||.- ......+.|+++++. +.-.|++-+
T Consensus 6 ~~~~l~~~~vi~vir~~~~~~--------a~~~~~al~~~Gi~~iEit~-----~~~~a~~~i~~l~~~-~~~~p~~~v- 70 (213)
T PRK06552 6 ILTKLKANGVVAVVRGESKEE--------ALKISLAVIKGGIKAIEVTY-----TNPFASEVIKELVEL-YKDDPEVLI- 70 (213)
T ss_pred HHHHHHHCCEEEEEECCCHHH--------HHHHHHHHHHCCCCEEEEEC-----CCccHHHHHHHHHHH-cCCCCCeEE-
Confidence 3577788888 4445653343 34456788899999999865 446677899999873 111112222
Q ss_pred cCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-----------ccccCCCCccHHHHH
Q 026320 105 FNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-----------DVCKHADSLRADIIA 173 (240)
Q Consensus 105 ~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-----------gi~d~~g~~r~d~v~ 173 (240)
|+ |..++ .+++++.++|||++++-=+= |+--==|-.....+.
T Consensus 71 ------Ga------GTV~~---------------~~~~~~a~~aGA~FivsP~~~~~v~~~~~~~~i~~iPG~~T~~E~~ 123 (213)
T PRK06552 71 ------GA------GTVLD---------------AVTARLAILAGAQFIVSPSFNRETAKICNLYQIPYLPGCMTVTEIV 123 (213)
T ss_pred ------ee------eeCCC---------------HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEECCcCCHHHHH
Confidence 10 22233 67889999999999994431 221112444555555
Q ss_pred HHHhccCCCceEE
Q 026320 174 KVIGRLGLEKTMF 186 (240)
Q Consensus 174 ~i~~~~~~~~lif 186 (240)
+-. +.|.+-+-+
T Consensus 124 ~A~-~~Gad~vkl 135 (213)
T PRK06552 124 TAL-EAGSEIVKL 135 (213)
T ss_pred HHH-HcCCCEEEE
Confidence 544 366665555
No 255
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=79.65 E-value=33 Score=31.93 Aligned_cols=183 Identities=14% Similarity=0.170 Sum_probs=106.3
Q ss_pred EecCccccccChhHHHHHHHHHHhCCceec----CCc--H---HH----HHH--HhC-----C-------chHHHHHHHH
Q 026320 9 KFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGD--W---AE----HLI--RNG-----P-------SAFKEYVEDC 61 (240)
Q Consensus 9 Kfg~GTs~l~p~~~l~eKi~l~~~~gV~v~----~Gt--l---~E----~a~--~qg-----~-------~~~~~yl~~~ 61 (240)
+++-|.+-+++-+.++.-|+-|.+.+.++. +|+ + ++ .+. ++. | ..=-+.+..|
T Consensus 17 ~yAV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lHLDHg~~~e~i~~a 96 (286)
T PRK08610 17 GYAVGQYNLNNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEA 96 (286)
T ss_pred CceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEECCCCCCHHHHHHH
Confidence 356677777788888888888887776542 221 1 12 111 111 0 0113556678
Q ss_pred HHcCCCEEEecCCcccCChhHH--HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHH
Q 026320 62 KQVGFDTIELNVGSLEIPEETL--LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 139 (240)
Q Consensus 62 k~lGF~~IEISdGti~l~~~~r--~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i 139 (240)
-++||+-|=+.--.+++.+-.+ .++++.|+..|.-|--|+|.--+ .+|..... . ..-.||++..
T Consensus 97 i~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg------~ed~~~~~---~-----~~yT~peea~ 162 (286)
T PRK08610 97 IDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGG------QEDDVVAD---G-----IIYADPKECQ 162 (286)
T ss_pred HHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCC------ccCCCCCc---c-----cccCCHHHHH
Confidence 8999999998755544433222 46788888999999999998421 11110000 0 0012666655
Q ss_pred HHHHHHHHcCCcEEEEecc---ccccCCCCccHHHHHHHHhccCCCceEEecC-CchhH-HHHHHHhCCCcccc
Q 026320 140 RRAERCLEAGADMIMIDSD---DVCKHADSLRADIIAKVIGRLGLEKTMFEAT-NPRTS-EWFIRRYGPKVNLF 208 (240)
Q Consensus 140 ~~~~~dLeAGA~~ViiEar---gi~d~~g~~r~d~v~~i~~~~~~~~lifEAP-~k~qQ-~~~I~~fG~~VNLg 208 (240)
+.++ +-|+|.+-+==- |+|...-+++-+.+++|-+.+++--++==+. .+..| ...|+.==..||.+
T Consensus 163 ~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~ 233 (286)
T PRK08610 163 ELVE---KTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAIPFGTAKINVN 233 (286)
T ss_pred HHHH---HHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHCCCeEEEec
Confidence 5554 458887665432 9999888999999999988776422222221 33333 33443333456665
No 256
>PRK08445 hypothetical protein; Provisional
Probab=79.42 E-value=25 Score=33.17 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCC-----EEEecCCcc-------cCChhHHHHHHHHHHHcCCcccc
Q 026320 54 FKEYVEDCKQVGFD-----TIELNVGSL-------EIPEETLLRYVRLVKSAGLKAKP 99 (240)
Q Consensus 54 ~~~yl~~~k~lGF~-----~IEISdGti-------~l~~~~r~~lI~~~~~~G~~v~~ 99 (240)
.++-++..|+.|.+ ..|+++-.+ ..+.++|.+.++.+++.|+++-+
T Consensus 143 ~~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~s 200 (348)
T PRK08445 143 IKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTA 200 (348)
T ss_pred HHHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeee
Confidence 48999999999998 278666422 57888999999999999999887
No 257
>PRK08444 hypothetical protein; Provisional
Probab=79.27 E-value=34 Score=32.55 Aligned_cols=85 Identities=16% Similarity=0.192 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHhC--CceecCCcHHHHHHHh--CCchHHHHHHHHHHcCCCEEEe-----cC-------CcccCChhHHH
Q 026320 21 PFIEEVVKRAHQH--DVYVSTGDWAEHLIRN--GPSAFKEYVEDCKQVGFDTIEL-----NV-------GSLEIPEETLL 84 (240)
Q Consensus 21 ~~l~eKi~l~~~~--gV~v~~Gtl~E~a~~q--g~~~~~~yl~~~k~lGF~~IEI-----Sd-------Gti~l~~~~r~ 84 (240)
+.+.+-++..|+. ++.++.=|..|+.+.. -.-..++.++..|+.|.+.+-- -+ -+-..+.++|.
T Consensus 113 e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~ 192 (353)
T PRK08444 113 EWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWL 192 (353)
T ss_pred HHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHH
Confidence 3444455555443 2333322444443322 1135778999999999876643 11 13367889999
Q ss_pred HHHHHHHHcCCcccceeeeecCC
Q 026320 85 RYVRLVKSAGLKAKPKFAVMFNK 107 (240)
Q Consensus 85 ~lI~~~~~~G~~v~~E~g~k~~~ 107 (240)
++++.|++.|+++-+ |..++.
T Consensus 193 ~i~~~a~~~Gi~~~s--g~l~G~ 213 (353)
T PRK08444 193 EIHKYWHKKGKMSNA--TMLFGH 213 (353)
T ss_pred HHHHHHHHcCCCccc--eeEEec
Confidence 999999999999866 554443
No 258
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=79.10 E-value=18 Score=36.29 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=87.0
Q ss_pred HHHHHHHHhCCceecC-C-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 026320 24 EEVVKRAHQHDVYVST-G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 101 (240)
Q Consensus 24 ~eKi~l~~~~gV~v~~-G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~ 101 (240)
.+-+++++++|..|.. . .||. +++..++.+.++++.+.+.|-+.|=|.|-.--+.+.+-.++|+.++++ +. .+.+
T Consensus 125 ~~~v~~ak~~g~~V~~~~e~f~D-~~r~~~~~l~~~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~-~~-~~~i 201 (526)
T TIGR00977 125 YDTVAYLKRQGDEVIYDAEHFFD-GYKANPEYALATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRS-LK-QPQL 201 (526)
T ss_pred HHHHHHHHHcCCeEEEEeeeeee-cccCCHHHHHHHHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHh-CC-CCEE
Confidence 4568899999998754 3 3533 334566789999999999999999999988888889999999999874 22 2335
Q ss_pred eeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCccHHHHH
Q 026320 102 AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIA 173 (240)
Q Consensus 102 g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~v~ 173 (240)
++.+. . |....+-.....++|||++ ||+- |+=+..||..-..+-
T Consensus 202 ~vH~H-N-------------------------D~GlAvANslaAv~AGA~~--Vd~TinGiGERaGNa~Le~v~ 247 (526)
T TIGR00977 202 GIHAH-N-------------------------DSGTAVANSLLAVEAGATM--VQGTINGYGERCGNANLCSLI 247 (526)
T ss_pred EEEEC-C-------------------------CCChHHHHHHHHHHhCCCE--EEEecccccCccCCCcHHHHH
Confidence 55432 1 2334467777889999997 5664 888888887655443
No 259
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=79.09 E-value=29 Score=32.33 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=46.3
Q ss_pred HHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCcccccccccccc
Q 026320 59 EDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVAR 124 (240)
Q Consensus 59 ~~~k~lGF~~IEISdGti-------------~l~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~ 124 (240)
+.+.+.||+.|||+=|.- .=..+.-.++++.+++. .. -+| +++|... |
T Consensus 82 ~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~-~~~~~p-VsvKiR~---g------------- 143 (312)
T PRK10550 82 ARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREA-VPAHLP-VTVKVRL---G------------- 143 (312)
T ss_pred HHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHh-cCCCcc-eEEEEEC---C-------------
Confidence 355778999999997762 12233344555665553 10 022 5666421 1
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 125 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 125 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
| ++.++.++.++..-++|++.+.|=+|
T Consensus 144 --~-----~~~~~~~~~a~~l~~~Gvd~i~Vh~R 170 (312)
T PRK10550 144 --W-----DSGERKFEIADAVQQAGATELVVHGR 170 (312)
T ss_pred --C-----CCchHHHHHHHHHHhcCCCEEEECCC
Confidence 1 12344677888888999999999998
No 260
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=79.08 E-value=7.4 Score=35.40 Aligned_cols=67 Identities=16% Similarity=0.372 Sum_probs=45.2
Q ss_pred HHHHHHHHHhCCceecC--CcH---------HHHHHHhCCc----hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHH
Q 026320 23 IEEVVKRAHQHDVYVST--GDW---------AEHLIRNGPS----AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYV 87 (240)
Q Consensus 23 l~eKi~l~~~~gV~v~~--Gtl---------~E~a~~qg~~----~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI 87 (240)
..+.+..+|++|+++.+ |+| +..++ .++. -++..++.+++.|||.|+|.=-. ++.+++..++
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l-~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~--~~~~d~~~~~ 123 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVL-SNPEARQRLINNILALAKKYGYDGVNIDFEN--VPPEDREAYT 123 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHh-cCHHHHHHHHHHHHHHHHHhCCCcEEEeccc--CCHHHHHHHH
Confidence 56889999999998886 554 33333 2222 46778888999999999996433 4455665555
Q ss_pred HHHHH
Q 026320 88 RLVKS 92 (240)
Q Consensus 88 ~~~~~ 92 (240)
..+++
T Consensus 124 ~fl~~ 128 (313)
T cd02874 124 QFLRE 128 (313)
T ss_pred HHHHH
Confidence 54443
No 261
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=79.05 E-value=11 Score=35.25 Aligned_cols=80 Identities=26% Similarity=0.380 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccc
Q 026320 55 KEYVEDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGA 120 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGti-------------~l~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~ 120 (240)
-+-.+.|++.|||.|||+-|+= .-..+.-.++++.+++. + +| +.+|.- +|..+
T Consensus 80 ~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~---~p-VsvKiR---~g~~~------ 146 (333)
T PRK11815 80 AEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVS---IP-VTVKHR---IGIDD------ 146 (333)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcC---Cc-eEEEEE---eeeCC------
Confidence 3334456778999999986652 11222334566666653 2 12 444421 11000
Q ss_pred ccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 121 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
..+...+++.++...++|++.+++-+|
T Consensus 147 -----------~~t~~~~~~~~~~l~~aG~d~i~vh~R 173 (333)
T PRK11815 147 -----------QDSYEFLCDFVDTVAEAGCDTFIVHAR 173 (333)
T ss_pred -----------CcCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 013466788888888999999999987
No 262
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=78.98 E-value=11 Score=33.28 Aligned_cols=90 Identities=20% Similarity=0.310 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHhCCceecC--CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec-CCcccC---ChhHHHHHHHHHHHcC
Q 026320 21 PFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN-VGSLEI---PEETLLRYVRLVKSAG 94 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~v~~--Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS-dGti~l---~~~~r~~lI~~~~~~G 94 (240)
..|.+.+.-.|++++.++- .|+=|.. .|.++|||.|=-- .|..+= +..+ .+||+++.+.+
T Consensus 79 ~~l~~li~~i~~~~~l~MADist~ee~~-------------~A~~~G~D~I~TTLsGYT~~t~~~~pD-~~lv~~l~~~~ 144 (192)
T PF04131_consen 79 ETLEELIREIKEKYQLVMADISTLEEAI-------------NAAELGFDIIGTTLSGYTPYTKGDGPD-FELVRELVQAD 144 (192)
T ss_dssp S-HHHHHHHHHHCTSEEEEE-SSHHHHH-------------HHHHTT-SEEE-TTTTSSTTSTTSSHH-HHHHHHHHHTT
T ss_pred cCHHHHHHHHHHhCcEEeeecCCHHHHH-------------HHHHcCCCEEEcccccCCCCCCCCCCC-HHHHHHHHhCC
Confidence 4466666666666655554 3444433 3457999998431 121111 2233 47899998877
Q ss_pred CcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 95 LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 95 ~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
..|+-|=++. + -+++++.|++||+.|+|=+
T Consensus 145 ~pvIaEGri~-----------------------------t----pe~a~~al~~GA~aVVVGs 174 (192)
T PF04131_consen 145 VPVIAEGRIH-----------------------------T----PEQAAKALELGAHAVVVGS 174 (192)
T ss_dssp SEEEEESS-------------------------------S----HHHHHHHHHTT-SEEEE-H
T ss_pred CcEeecCCCC-----------------------------C----HHHHHHHHhcCCeEEEECc
Confidence 7766665551 1 3678899999999999844
No 263
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=78.91 E-value=41 Score=30.58 Aligned_cols=158 Identities=16% Similarity=0.146 Sum_probs=99.4
Q ss_pred hhHHHHHHHHHHhCCceecC---C-cHHHHHHHhCC--------chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHH
Q 026320 20 KPFIEEVVKRAHQHDVYVST---G-DWAEHLIRNGP--------SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYV 87 (240)
Q Consensus 20 ~~~l~eKi~l~~~~gV~v~~---G-tl~E~a~~qg~--------~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI 87 (240)
++-|+.--+.++++|+.+.+ - .-.|.+...-+ -.=-.+++.+.+.|- -|=+|.|.- .+.+++...+
T Consensus 75 ~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~~d~lkI~s~~~~n~~LL~~~a~~gk-PVilk~G~~-~t~~e~~~Av 152 (260)
T TIGR01361 75 EEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEYADILQIGARNMQNFELLKEVGKQGK-PVLLKRGMG-NTIEEWLYAA 152 (260)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhhCCEEEECcccccCHHHHHHHhcCCC-cEEEeCCCC-CCHHHHHHHH
Confidence 66788888899999997764 2 23444432210 001358899999994 677999976 5678889999
Q ss_pred HHHHHcCCc--ccceeeee-c-CCC--CCCCccccccc-cccccCCC-CcccccCHHHHHHHHHHHHHcCCcEEEEec--
Q 026320 88 RLVKSAGLK--AKPKFAVM-F-NKS--DIPSDRDRAFG-AYVARAPR-STEYVEDVDLLIRRAERCLEAGADMIMIDS-- 157 (240)
Q Consensus 88 ~~~~~~G~~--v~~E~g~k-~-~~~--evg~~~d~~~~-~~~~~~~~-~~~~~~~~~~~i~~~~~dLeAGA~~ViiEa-- 157 (240)
+.+++.|-. ++.|.|+. + +.. .+.-..=+.+- .+-.|..+ +++-.-..+.....+...+.+||+-+|||-
T Consensus 153 e~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~ 232 (260)
T TIGR01361 153 EYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHP 232 (260)
T ss_pred HHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCC
Confidence 999988863 55566552 1 100 00000000000 00012222 333333345556777888999999999998
Q ss_pred ---cccccCCCCccHHHHHHHHhcc
Q 026320 158 ---DDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 158 ---rgi~d~~g~~r~d~v~~i~~~~ 179 (240)
+...|..-.+..+.+.++++.+
T Consensus 233 t~d~a~~D~~~sl~p~~l~~lv~~i 257 (260)
T TIGR01361 233 DPEKALSDSKQQLTPEEFKRLVKEL 257 (260)
T ss_pred CccccCCcchhcCCHHHHHHHHHHH
Confidence 3678889999999999998653
No 264
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=78.50 E-value=28 Score=33.46 Aligned_cols=128 Identities=19% Similarity=0.242 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc--cCChhHHHHHHHHHHHc-CCccc
Q 026320 22 FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL--EIPEETLLRYVRLVKSA-GLKAK 98 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti--~l~~~~r~~lI~~~~~~-G~~v~ 98 (240)
.+.+-++.++++|+.+.+|- + ++..-.+.++.+.++|.|+|-+.-|+- ..+. .-.+.++++++. ++.+.
T Consensus 95 ~~~~~i~~a~~~G~~~~~g~-----~--s~~t~~e~~~~a~~~GaD~I~~~pg~~~~~~~~-~~~~~l~~l~~~~~iPI~ 166 (430)
T PRK07028 95 TIEDAVRAARKYGVRLMADL-----I--NVPDPVKRAVELEELGVDYINVHVGIDQQMLGK-DPLELLKEVSEEVSIPIA 166 (430)
T ss_pred HHHHHHHHHHHcCCEEEEEe-----c--CCCCHHHHHHHHHhcCCCEEEEEeccchhhcCC-ChHHHHHHHHhhCCCcEE
Confidence 35677778888887665541 1 111112234566778999997776642 1111 123456666542 22222
Q ss_pred ceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHH--HHHHHH
Q 026320 99 PKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRAD--IIAKVI 176 (240)
Q Consensus 99 ~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d--~v~~i~ 176 (240)
...|+ + .+.+...+++||+.|++ ++.||+.. +++.- .+.+.+
T Consensus 167 a~GGI------------------------------~----~~n~~~~l~aGAdgv~v-GsaI~~~~-d~~~~~~~l~~~i 210 (430)
T PRK07028 167 VAGGL------------------------------D----AETAAKAVAAGADIVIV-GGNIIKSA-DVTEAARKIREAI 210 (430)
T ss_pred EECCC------------------------------C----HHHHHHHHHcCCCEEEE-ChHHcCCC-CHHHHHHHHHHHH
Confidence 22222 1 35677789999998776 45688754 33322 233344
Q ss_pred hccCCCce--EEecCCchh
Q 026320 177 GRLGLEKT--MFEATNPRT 193 (240)
Q Consensus 177 ~~~~~~~l--ifEAP~k~q 193 (240)
++..+-|+ .|+.|.++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~ 229 (430)
T PRK07028 211 DSGKPVKIDKFKKSLDEEI 229 (430)
T ss_pred hccCCccccccccCCCHHH
Confidence 55444443 688887754
No 265
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=78.47 E-value=8.2 Score=35.01 Aligned_cols=91 Identities=18% Similarity=0.167 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 026320 22 FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 101 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~ 101 (240)
.|++|+.- | .+..|+|... .+ ..-.+.+...|||.|-|.-=--.++.++-..+|+.++..|..++-
T Consensus 9 ~lk~~l~~----g-~~~~g~~~~~---~s----p~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lV-- 74 (256)
T PRK10558 9 KFKAALAA----K-QVQIGCWSAL---AN----PITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVV-- 74 (256)
T ss_pred HHHHHHHc----C-CceEEEEEcC---CC----cHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEE--
Confidence 46666654 3 2334666521 11 244556678899999999988899999999999999887765543
Q ss_pred eeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 102 AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 102 g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
-+ + ..| -..+++.||+||+-||+=-
T Consensus 75 Rv-------p-~~~-----------------------~~~i~r~LD~Ga~giivP~ 99 (256)
T PRK10558 75 RV-------P-TNE-----------------------PVIIKRLLDIGFYNFLIPF 99 (256)
T ss_pred EC-------C-CCC-----------------------HHHHHHHhCCCCCeeeecC
Confidence 22 1 111 2456778999999999743
No 266
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=78.12 E-value=9.7 Score=35.48 Aligned_cols=77 Identities=29% Similarity=0.390 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCCh--------hHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPE--------ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 124 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~--------~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~ 124 (240)
.+.+|.+.+.+.|+|+|||+=+....+. +...++++.+++. . -+| +.+|-. |
T Consensus 113 ~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~-~-~iP-v~vKl~-----------------p 172 (325)
T cd04739 113 GWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSA-V-TIP-VAVKLS-----------------P 172 (325)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhc-c-CCC-EEEEcC-----------------C
Confidence 4567888888899999999887643322 2235777777764 1 133 444421 1
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 125 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 125 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
+..++.+.++...++||+-|++-.+
T Consensus 173 ---------~~~~~~~~a~~l~~~Gadgi~~~nt 197 (325)
T cd04739 173 ---------FFSALAHMAKQLDAAGADGLVLFNR 197 (325)
T ss_pred ---------CccCHHHHHHHHHHcCCCeEEEEcC
Confidence 1124466666777999999999887
No 267
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=77.71 E-value=41 Score=28.50 Aligned_cols=33 Identities=18% Similarity=0.429 Sum_probs=19.6
Q ss_pred HHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHH
Q 026320 140 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKV 175 (240)
Q Consensus 140 ~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i 175 (240)
+.++..+++||+.|++ ++.+|.+.. ..+.+..+
T Consensus 170 ~n~~~~~~~Ga~~v~v-Gsai~~~~d--~~~~~~~l 202 (206)
T TIGR03128 170 DTIPDVIKLGPDIVIV-GGAITKAAD--PAEAARQI 202 (206)
T ss_pred HHHHHHHHcCCCEEEE-eehhcCCCC--HHHHHHHH
Confidence 4556667888887776 344776542 34444444
No 268
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=77.70 E-value=22 Score=30.34 Aligned_cols=153 Identities=15% Similarity=0.091 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHhCCceecC--C--cHHHHHHHhCCchHHHHHHHHHHcCCCEE-EecCCcc-cCC-----hhHHHHHHH
Q 026320 20 KPFIEEVVKRAHQHDVYVST--G--DWAEHLIRNGPSAFKEYVEDCKQVGFDTI-ELNVGSL-EIP-----EETLLRYVR 88 (240)
Q Consensus 20 ~~~l~eKi~l~~~~gV~v~~--G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~I-EISdGti-~l~-----~~~r~~lI~ 88 (240)
....+.-.+++++++ .+++ | -|.-..... ..+++..+.+++.++-+| |+.-..- ... .+.....++
T Consensus 39 ~~~~~~~~~~~~~~~-~i~~~~GihP~~~~~~~~--~~~~~l~~~l~~~~~~~iGEiGld~~~~~~~~~~q~~~~~~~~~ 115 (252)
T TIGR00010 39 LEDFLRALELAEKYP-NVYAAVGVHPLDVDDDTK--EDIKELERLAAHPKVVAIGETGLDYYKADEYKRRQEEVFRAQLQ 115 (252)
T ss_pred HHHHHHHHHHHHHCC-CEEEEEEeCcchhhcCCH--HHHHHHHHHccCCCEEEEEecccCcCCCCCCHHHHHHHHHHHHH
Confidence 345777888899998 5554 4 122111111 144555555566777788 7732221 111 144445588
Q ss_pred HHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc-ccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCc
Q 026320 89 LVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY-VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSL 167 (240)
Q Consensus 89 ~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~ 167 (240)
.+++.|+-|....+.-.. ++ ...+.+.-.......++ ..+ .+++.+.++.|++.-+-.+ ++. -
T Consensus 116 ~a~~~~~pv~iH~~~~~~--~~----~~~l~~~~~~~~~i~H~~~~~----~~~~~~~~~~g~~~~~~~~--~~~----~ 179 (252)
T TIGR00010 116 LAEELNLPVIIHARDAEE--DV----LDILREEKPKVGGVLHCFTGD----AELAKKLLDLGFYISISGI--VTF----K 179 (252)
T ss_pred HHHHhCCCeEEEecCccH--HH----HHHHHhcCCCCCEEEEccCCC----HHHHHHHHHCCCeEeecee--Eec----C
Confidence 889988887766553100 00 00000000000000011 112 2455555666766555421 110 1
Q ss_pred cHHHHHHHHhccCCCceEEecCCc
Q 026320 168 RADIIAKVIGRLGLEKTMFEATNP 191 (240)
Q Consensus 168 r~d~v~~i~~~~~~~~lifEAP~k 191 (240)
+...+.+++..++.+|++||...|
T Consensus 180 ~~~~~~~~i~~~~~dril~~TD~p 203 (252)
T TIGR00010 180 NAKSLREVVRKIPLERLLVETDSP 203 (252)
T ss_pred CcHHHHHHHHhCCHHHeEecccCC
Confidence 234577788889999999999875
No 269
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=77.62 E-value=22 Score=35.30 Aligned_cols=95 Identities=16% Similarity=0.148 Sum_probs=64.3
Q ss_pred HHHHHHHHHHcCCCEEEecCCccc--------CChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSLE--------IPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 121 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti~--------l~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~ 121 (240)
++.-++..+..+.+.|-+.-.+-+ .+.++ -.+.|+.+++.|+. .+|+-.+..
T Consensus 78 id~a~~al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~--v~f~~Ed~~-------------- 141 (494)
T TIGR00973 78 IDAAAEALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDD--VEFSCEDAG-------------- 141 (494)
T ss_pred HHHHHHhccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe--EEEEcCCCC--------------
Confidence 444444444457788888766532 23333 23688889998875 344443210
Q ss_pred cccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 122 VARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 122 ~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
..+++.+++.++...++||+.| .++|..|-..++.+.++++.+
T Consensus 142 ----------r~d~~~l~~~~~~~~~~Ga~~i-----~l~DTvG~~~P~~~~~~i~~l 184 (494)
T TIGR00973 142 ----------RTEIPFLARIVEAAINAGATTI-----NIPDTVGYALPAEYGNLIKGL 184 (494)
T ss_pred ----------CCCHHHHHHHHHHHHHcCCCEE-----EeCCCCCCCCHHHHHHHHHHH
Confidence 1258999999999999999865 478999999999888888654
No 270
>PRK14847 hypothetical protein; Provisional
Probab=77.53 E-value=39 Score=32.24 Aligned_cols=125 Identities=11% Similarity=0.037 Sum_probs=80.4
Q ss_pred HHHHHHHHHhCCc-------eecCCcHHHHHHHhCCchHHHHHHHHHHc-C-----CCEEEecCCcccCChhHHHHHHHH
Q 026320 23 IEEVVKRAHQHDV-------YVSTGDWAEHLIRNGPSAFKEYVEDCKQV-G-----FDTIELNVGSLEIPEETLLRYVRL 89 (240)
Q Consensus 23 l~eKi~l~~~~gV-------~v~~Gtl~E~a~~qg~~~~~~yl~~~k~l-G-----F~~IEISdGti~l~~~~r~~lI~~ 89 (240)
+.+-++++++++. .|..| +|-|-+-+++-+.++.+.+.+. | -+.|-++|-.-.+.+.+-.++|+.
T Consensus 153 ~~~~v~~Ak~~~~~~~g~~~~V~~~--~EDasRad~dfL~~~~~~a~~~~ga~r~~a~~i~l~DTVG~~~P~~~~~~i~~ 230 (333)
T PRK14847 153 ALAGTRQIRALADANPGTQWIYEYS--PETFSLAELDFAREVCDAVSAIWGPTPQRKMIINLPATVESSTANVYADQIEW 230 (333)
T ss_pred HHHHHHHHHHhccccCCCceEEEEe--eecCCCCCHHHHHHHHHHHHHHhCCCccCCcEEEeCCccccCCHHHHHHHHHH
Confidence 4556778999943 22222 2334344444555666655444 4 677999999999999888899999
Q ss_pred HHHc-CCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCC
Q 026320 90 VKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADS 166 (240)
Q Consensus 90 ~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~ 166 (240)
++++ +=....++++.+ -.|....+......++|||++| ++- |+=+..||
T Consensus 231 l~~~~~~~~~v~i~~H~--------------------------HnD~GlA~ANslaA~~aGa~~i--~~tv~G~GERaGN 282 (333)
T PRK14847 231 MHRSLARRDCIVLSVHP--------------------------HNDRGTAVAAAELAVLAGAERI--EGCLFGNGERTGN 282 (333)
T ss_pred HHHhcCCCCCcEEEEEe--------------------------CCCCchHHHHHHHHHHhCCCEE--EeeCCcCCccccc
Confidence 8763 000112344432 2244556788888899999995 554 88777999
Q ss_pred ccHHHHHHHHh
Q 026320 167 LRADIIAKVIG 177 (240)
Q Consensus 167 ~r~d~v~~i~~ 177 (240)
...+.+-..+.
T Consensus 283 a~lE~v~~~L~ 293 (333)
T PRK14847 283 VDLVALALNLE 293 (333)
T ss_pred hhHHHHHHHHH
Confidence 88777655553
No 271
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=77.38 E-value=21 Score=31.11 Aligned_cols=97 Identities=15% Similarity=0.188 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCCh-hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPE-ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 131 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~-~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 131 (240)
..-+..+.+.+.|++.+-+=|=...... ..-.+.|+.+.+. +++..- +| . +
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~-------~~~~l~---v~--G----------------G 84 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEA-------VGVPVQ---LG--G----------------G 84 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHH-------cCCcEE---Ec--C----------------C
Confidence 3445555667789999988776654422 3445566666552 222110 10 0 0
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEe
Q 026320 132 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFE 187 (240)
Q Consensus 132 ~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifE 187 (240)
..| .+.++..+++||+.|++=+.-+. +++.+.++.+.+|.++++.=
T Consensus 85 i~~----~~~~~~~~~~Ga~~v~iGs~~~~------~~~~~~~i~~~~g~~~i~~s 130 (241)
T PRK13585 85 IRS----AEDAASLLDLGVDRVILGTAAVE------NPEIVRELSEEFGSERVMVS 130 (241)
T ss_pred cCC----HHHHHHHHHcCCCEEEEChHHhh------ChHHHHHHHHHhCCCcEEEE
Confidence 112 46677788999999999654322 35677888887777777653
No 272
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=77.30 E-value=4.6 Score=38.80 Aligned_cols=121 Identities=17% Similarity=0.139 Sum_probs=77.9
Q ss_pred cccccChhHHHHHHHHHHhCCc-eecC-Cc--------HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHH
Q 026320 14 SHSLMPKPFIEEVVKRAHQHDV-YVST-GD--------WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETL 83 (240)
Q Consensus 14 Ts~l~p~~~l~eKi~l~~~~gV-~v~~-Gt--------l~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r 83 (240)
..++++++.+.++++-+.+.|+ .+.. || |+|-++.. --++|. .+.-.+|+..||.--+.......+
T Consensus 86 ~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~~y~~~~~~~---ik~~~p-~~~i~a~s~~ei~~~~~~~~~s~~ 161 (370)
T COG1060 86 KAYTLSPEEILEEVREAVKRGITEVLIVGGEHPELSLEYYEELFRT---IKEEFP-DLHIHALSAGEILFLAREGGLSYE 161 (370)
T ss_pred cccccCHHHHHHHHHHHHHcCCeEEEEecCcCCCcchHHHHHHHHH---HHHhCc-chhhcccCHHHhHHHHhccCCCHH
Confidence 4567888889999999999999 5553 43 22322221 111233 334488888888766655444443
Q ss_pred HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEE
Q 026320 84 LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 153 (240)
Q Consensus 84 ~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~V 153 (240)
+.+++++++|+-..|+.|---...++ .+...|.+ .++++|++.+++.-++|-..+
T Consensus 162 -E~l~~Lk~aGldsmpg~~aeil~e~v--------r~~~~p~K------~~~~~wle~~~~Ah~lGI~~t 216 (370)
T COG1060 162 -EVLKRLKEAGLDSMPGGGAEILSEEV--------RKIHCPPK------KSPEEWLEIHERAHRLGIPTT 216 (370)
T ss_pred -HHHHHHHHcCCCcCcCcceeechHHH--------HHhhCCCC------CCHHHHHHHHHHHHHcCCCcc
Confidence 67888889999999988763321111 01122333 368999999999999997654
No 273
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=77.28 E-value=65 Score=30.27 Aligned_cols=81 Identities=16% Similarity=0.139 Sum_probs=46.8
Q ss_pred HHHHHHHcCCCEEEecCCcc-------c-----------CChhHHHH----HHHHHHHc-CCcccceeeeecCCCCCCCc
Q 026320 57 YVEDCKQVGFDTIELNVGSL-------E-----------IPEETLLR----YVRLVKSA-GLKAKPKFAVMFNKSDIPSD 113 (240)
Q Consensus 57 yl~~~k~lGF~~IEISdGti-------~-----------l~~~~r~~----lI~~~~~~-G~~v~~E~g~k~~~~evg~~ 113 (240)
--+.|++.|||.|||.-|.- + =+.+.|.| +|+.+++. |-. + +++|-...+...
T Consensus 157 aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d--~-v~vRis~~~~~~- 232 (338)
T cd02933 157 AARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGAD--R-VGIRLSPFGTFN- 232 (338)
T ss_pred HHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCC--c-eEEEECccccCC-
Confidence 34566778999999986651 0 01234444 45555553 322 3 666654322110
Q ss_pred cccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEE
Q 026320 114 RDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 155 (240)
Q Consensus 114 ~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~Vii 155 (240)
+. ....+.++.++.++..-++|+|+|=|
T Consensus 233 -~~-------------~~~~~~ee~~~~~~~l~~~g~d~i~v 260 (338)
T cd02933 233 -DM-------------GDSDPEATFSYLAKELNKRGLAYLHL 260 (338)
T ss_pred -CC-------------CCCCCHHHHHHHHHHHHHcCCcEEEE
Confidence 00 00125688888888888899999987
No 274
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=76.92 E-value=36 Score=33.21 Aligned_cols=125 Identities=19% Similarity=0.201 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 026320 20 KPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 99 (240)
Q Consensus 20 ~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~ 99 (240)
-+...+-++.+++||+.+.. ..|.+..-.++.+-+.++.+.+.|.+.|=+-|-.--..+.+-.++|+.+++.=-. ..
T Consensus 116 l~~~~~~v~ya~~~g~~~~~--~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l~DTvG~~~P~~~~~~i~~l~~~v~~-~~ 192 (409)
T COG0119 116 LERAVDAVEYARDHGLEVRF--SAEDATRTDPEFLAEVVKAAIEAGADRINLPDTVGVATPNEVADIIEALKANVPN-KV 192 (409)
T ss_pred HHHHHHHHHHHHHcCCeEEE--EeeccccCCHHHHHHHHHHHHHcCCcEEEECCCcCccCHHHHHHHHHHHHHhCCC-CC
Confidence 34567788999999986663 2344446666677788888889999999999999999999999999999884110 11
Q ss_pred eeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHH
Q 026320 100 KFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIA 173 (240)
Q Consensus 100 E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~ 173 (240)
-+++ +|-.|....+-.....++|||+.|=.=-.||=+..||.--..+.
T Consensus 193 ~l~~--------------------------H~HnD~G~AvANslaAv~aGa~~v~~TvnGiGERaGna~l~~v~ 240 (409)
T COG0119 193 ILSV--------------------------HCHNDLGMAVANSLAAVEAGADQVEGTVNGIGERAGNAALEEVV 240 (409)
T ss_pred eEEE--------------------------EecCCcchHHHHHHHHHHcCCcEEEEecccceeccccccHHHHH
Confidence 1222 22234556678888899999998744445776777775444333
No 275
>PRK07360 FO synthase subunit 2; Reviewed
Probab=76.85 E-value=46 Score=31.51 Aligned_cols=138 Identities=12% Similarity=0.127 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHcCCCEE-EecCCc----------c-cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 026320 53 AFKEYVEDCKQVGFDTI-ELNVGS----------L-EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 120 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~I-EISdGt----------i-~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~ 120 (240)
..++.++.+|+.|.+.+ |-|.-+ - ..+.++|.+.++.+++.|+++-+ |.-.+..
T Consensus 161 ~~~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~s--g~i~G~g------------ 226 (371)
T PRK07360 161 SYEEVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTS--TMMYGHV------------ 226 (371)
T ss_pred CHHHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcee--eEEeeCC------------
Confidence 35788999999999998 333211 1 35778999999999999999866 5544321
Q ss_pred ccccCCCCcccccCHHHHHHHHHHHHHcCCcE------EEE----eccccccCC----CCccHHHHHHHH-hccCCCc--
Q 026320 121 YVARAPRSTEYVEDVDLLIRRAERCLEAGADM------IMI----DSDDVCKHA----DSLRADIIAKVI-GRLGLEK-- 183 (240)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~------Vii----Eargi~d~~----g~~r~d~v~~i~-~~~~~~~-- 183 (240)
++.+++++.+..--+.+.++ |-+ ++--+.+.. +.--.+.+..|+ .++=+.+
T Consensus 227 ------------Et~edrv~~l~~lr~l~~~~~g~~~fIp~~f~~~~Tpl~~~~~~~~~~~~~~~lr~iAi~Rl~lp~~~ 294 (371)
T PRK07360 227 ------------ETPEHRIDHLLILREIQQETGGITEFVPLPFVHENAPLYERGRVKGGAPGLEDLLLYAVSRIFLGNWI 294 (371)
T ss_pred ------------CCHHHHHHHHHHHHHhchhhCCeeEEEeccccCCCCccccccccCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 13577777777666666554 221 111111110 011223344333 3333222
Q ss_pred eEEecCC---chhHHHHHHHhCCCcccc-cCCCCchh
Q 026320 184 TMFEATN---PRTSEWFIRRYGPKVNLF-VDHSQVMD 216 (240)
Q Consensus 184 lifEAP~---k~qQ~~~I~~fG~~VNLg-I~~~dVl~ 216 (240)
+-.=|+. ...+..+...+|.|+=-+ +.++.|..
T Consensus 295 ~~i~a~~~~lg~~~~~~~l~~Gan~~~~~~~~~~v~~ 331 (371)
T PRK07360 295 KNIQASWVKLGLKLAQVALNCGANDLGGTLMEEHITK 331 (371)
T ss_pred CCeeccceeeCHHHHHHHHhcCCccCcCcCcccceec
Confidence 3344442 233455667888887655 66666655
No 276
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=76.67 E-value=10 Score=34.73 Aligned_cols=89 Identities=13% Similarity=0.184 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 026320 22 FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 101 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~ 101 (240)
.|++|+.- | .+..|+|.... + ....+.+...|||.|-|.-=--.++.++-..+|+.++..|..++.
T Consensus 8 ~lk~~L~~----G-~~~~G~~~~~~---s----p~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lV-- 73 (267)
T PRK10128 8 PFKEGLRK----G-EVQIGLWLSST---T----SYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVI-- 73 (267)
T ss_pred HHHHHHHc----C-CceEEEEecCC---C----cHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEE--
Confidence 46666543 3 33446665321 1 345566678899999999988899999999999999887765432
Q ss_pred eeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEE
Q 026320 102 AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 155 (240)
Q Consensus 102 g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~Vii 155 (240)
-+. .. + -..+++.||+||+=||+
T Consensus 74 Rvp--------~~-------------------~----~~~i~r~LD~GA~GIiv 96 (267)
T PRK10128 74 RPV--------EG-------------------S----KPLIKQVLDIGAQTLLI 96 (267)
T ss_pred ECC--------CC-------------------C----HHHHHHHhCCCCCeeEe
Confidence 221 11 1 24568889999999987
No 277
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=76.65 E-value=7.6 Score=37.20 Aligned_cols=121 Identities=20% Similarity=0.292 Sum_probs=66.7
Q ss_pred HHHHHHHHHhCCceecC--CcH--HH------------------HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC--
Q 026320 23 IEEVVKRAHQHDVYVST--GDW--AE------------------HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI-- 78 (240)
Q Consensus 23 l~eKi~l~~~~gV~v~~--Gtl--~E------------------~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l-- 78 (240)
-++-+++||.+||.|-. |.. .| -.+.. .-++-.+.+++.|.|++=||-||.-=
T Consensus 125 Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~~~T---~PeeA~~Fv~~TgvD~LAvaiGT~HG~Y 201 (347)
T PRK09196 125 TRKVVEMAHACGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSHDQLLT---DPEEAADFVKKTQVDALAIAIGTSHGAY 201 (347)
T ss_pred HHHHHHHHHHcCCeEEEEEeeccCccccccccccCcccccccchhhcCC---CHHHHHHHHHHhCcCeEhhhhccccCCC
Confidence 47889999999997763 432 11 11222 45677777889999999999999721
Q ss_pred -----Ch--hHHHHHHHHHHHcCCcccceeeeecCCCCCCCcc---ccccccccccCCCCcccccCHHHHHHHHHHHHHc
Q 026320 79 -----PE--ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDR---DRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA 148 (240)
Q Consensus 79 -----~~--~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~---d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeA 148 (240)
|. .-..++++..++. .+-.| =|.++.|.+|..- -.+.|..+.... |+. -+++++.++.
T Consensus 202 k~~~~p~~~~LdfdrL~eI~~~-v~~vP--LVLHGgSG~~~~~~~~~~~~g~~~~~~~----G~~-----~e~i~~ai~~ 269 (347)
T PRK09196 202 KFTRKPTGDVLAIDRIKEIHAR-LPNTH--LVMHGSSSVPQELLDIINEYGGDMPETY----GVP-----VEEIQEGIKH 269 (347)
T ss_pred CCCCCCChhhccHHHHHHHHhc-CCCCC--EEEeCCCCCCHHHHHHHHHhcCCccccC----CCC-----HHHHHHHHHC
Confidence 21 1233345555542 10122 2566666552000 000000000000 000 3778899999
Q ss_pred CCcEEEEecc
Q 026320 149 GADMIMIDSD 158 (240)
Q Consensus 149 GA~~ViiEar 158 (240)
|..+|=|-.+
T Consensus 270 GI~KINi~Td 279 (347)
T PRK09196 270 GVRKVNIDTD 279 (347)
T ss_pred CCceEEeChH
Confidence 9999977654
No 278
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=76.52 E-value=8.5 Score=42.14 Aligned_cols=114 Identities=13% Similarity=0.240 Sum_probs=75.0
Q ss_pred cChhHHHHHHHHHHhCCceecC---C-cHHHHHH-----------------Hh-----CCc----hHH---HHHHHHHHc
Q 026320 18 MPKPFIEEVVKRAHQHDVYVST---G-DWAEHLI-----------------RN-----GPS----AFK---EYVEDCKQV 64 (240)
Q Consensus 18 ~p~~~l~eKi~l~~~~gV~v~~---G-tl~E~a~-----------------~q-----g~~----~~~---~yl~~~k~l 64 (240)
||.+.++.-++.+.++||.++- . .|++.+. .. +|. .++ ++.+.+.+.
T Consensus 622 ypd~vv~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~ 701 (1143)
T TIGR01235 622 YPDNVVKYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKA 701 (1143)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHc
Confidence 7888888888888888886651 2 2433221 11 011 144 455566889
Q ss_pred CCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHH
Q 026320 65 GFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAER 144 (240)
Q Consensus 65 GF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 144 (240)
|.+.|=|.|-.--+.+..-.++++.++++ +. ..+++.+ +. |...-+-....
T Consensus 702 Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~-~~--~pi~~H~-Hd-------------------------t~Gla~an~la 752 (1143)
T TIGR01235 702 GAHILGIKDMAGLLKPAAAKLLIKALREK-TD--LPIHFHT-HD-------------------------TSGIAVASMLA 752 (1143)
T ss_pred CCCEEEECCCcCCcCHHHHHHHHHHHHHh-cC--CeEEEEE-CC-------------------------CCCcHHHHHHH
Confidence 99999999999999999999999999985 22 2344432 11 12233666777
Q ss_pred HHHcCCcEEEEecccc
Q 026320 145 CLEAGADMIMIDSDDV 160 (240)
Q Consensus 145 dLeAGA~~ViiEargi 160 (240)
.++|||+.|=.=-.|+
T Consensus 753 A~eaGad~vD~ai~gl 768 (1143)
T TIGR01235 753 AVEAGVDVVDVAVDSM 768 (1143)
T ss_pred HHHhCCCEEEecchhh
Confidence 8999999854333455
No 279
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=76.32 E-value=37 Score=31.26 Aligned_cols=100 Identities=20% Similarity=0.245 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc------------C-ChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLE------------I-PEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAF 118 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~------------l-~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~ 118 (240)
.+.+..+.+++.|||.|||+-|.-. + ..+.-.++++.+++. + +| +.+|-.. |
T Consensus 76 ~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~---~p-v~vKir~---g------- 141 (319)
T TIGR00737 76 TMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVD---IP-VTVKIRI---G------- 141 (319)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcC---CC-EEEEEEc---c-------
Confidence 4555556678899999999877521 1 123334556666542 2 22 4555321 1
Q ss_pred ccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc---ccccCCCCccHHHHHHHHhccC
Q 026320 119 GAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD---DVCKHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar---gi~d~~g~~r~d~v~~i~~~~~ 180 (240)
|. .+....++.++..-++|++.|.+-+| +-| .|....+.+.+|.+.++
T Consensus 142 --------~~----~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~--~~~~~~~~i~~i~~~~~ 192 (319)
T TIGR00737 142 --------WD----DAHINAVEAARIAEDAGAQAVTLHGRTRAQGY--SGEANWDIIARVKQAVR 192 (319)
T ss_pred --------cC----CCcchHHHHHHHHHHhCCCEEEEEcccccccC--CCchhHHHHHHHHHcCC
Confidence 10 01123456677777899999999887 222 13334455555555443
No 280
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=76.32 E-value=24 Score=34.00 Aligned_cols=71 Identities=10% Similarity=0.127 Sum_probs=48.0
Q ss_pred ChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC----ChhHHHHHHHHHHHcC
Q 026320 19 PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI----PEETLLRYVRLVKSAG 94 (240)
Q Consensus 19 p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l----~~~~r~~lI~~~~~~G 94 (240)
.++.+.+.+.-.++.+|.+..-. +|....++.+.+.+.|.+.|-|..-|.+- +..++..+.+..++.+
T Consensus 117 ~p~l~~~ii~~vr~a~VtvkiRl--------~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~ 188 (369)
T TIGR01304 117 KPELLGERIAEVRDSGVITAVRV--------SPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELD 188 (369)
T ss_pred ChHHHHHHHHHHHhcceEEEEec--------CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCC
Confidence 45677888888888876555432 33478899999999999999997544321 1234666666666655
Q ss_pred Ccc
Q 026320 95 LKA 97 (240)
Q Consensus 95 ~~v 97 (240)
..|
T Consensus 189 IPV 191 (369)
T TIGR01304 189 VPV 191 (369)
T ss_pred CCE
Confidence 444
No 281
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=76.19 E-value=43 Score=32.53 Aligned_cols=38 Identities=24% Similarity=0.487 Sum_probs=25.1
Q ss_pred HHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 139 IRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 139 i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
.+.++..+++||+.+++ ||.||.+.. ..+.++++.+.+
T Consensus 341 ~eti~~l~~aGADivVV-GsaIf~a~D--p~~aak~l~~~i 378 (391)
T PRK13307 341 VENVEEALKAGADILVV-GRAITKSKD--VRRAAEDFLNKL 378 (391)
T ss_pred HHHHHHHHHcCCCEEEE-eHHHhCCCC--HHHHHHHHHHhh
Confidence 34577778999997766 678997543 344455555543
No 282
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=76.02 E-value=2.7 Score=38.72 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=37.8
Q ss_pred cccChhHHHHHHHHHHhCCceecC-Cc-HHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 026320 16 SLMPKPFIEEVVKRAHQHDVYVST-GD-WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 73 (240)
Q Consensus 16 ~l~p~~~l~eKi~l~~~~gV~v~~-Gt-l~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd 73 (240)
.+|+.+.|++.-++||+|||+++- |. ++|.+...+ ..+.+|. -+||.+=||-
T Consensus 140 ~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~-~~~~e~~-----~~~D~v~~~~ 193 (290)
T PF01212_consen 140 TVYSLEELRAISELAREHGLPLHMDGARLANAAAALG-VSLAEIA-----AGADSVSFGG 193 (290)
T ss_dssp B---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHH-HHHHHHH-----TTSSEEEEET
T ss_pred eeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhccc-ccHHHHh-----hhCCEEEEEE
Confidence 367888999999999999999998 85 899885544 1344444 7899999883
No 283
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=75.89 E-value=20 Score=27.70 Aligned_cols=81 Identities=27% Similarity=0.452 Sum_probs=59.3
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhC---Cceec--C-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc--
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQH---DVYVS--T-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-- 76 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~---gV~v~--~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-- 76 (240)
+..+=+++|...++| ...+++..+++. ++.+. + |++.. +++++.++++|++.|.+|=-+.
T Consensus 46 ~~~i~~~~gep~~~~--~~~~~~~~~~~~~~~~~~i~~~t~~~~~~----------~~~l~~l~~~~~~~i~~~l~s~~~ 113 (166)
T PF04055_consen 46 VKEIFFGGGEPTLHP--DFIELLELLRKIKKRGIRISINTNGTLLD----------EELLDELKKLGVDRIRISLESLDE 113 (166)
T ss_dssp HEEEEEESSTGGGSC--HHHHHHHHHHHCTCTTEEEEEEEESTTHC----------HHHHHHHHHTTCSEEEEEEBSSSH
T ss_pred CcEEEEeecCCCcch--hHHHHHHHHHHhhccccceeeeccccchh----------HHHHHHHHhcCccEEecccccCCH
Confidence 556778888888887 566777776665 66555 2 55443 6888899999999998875444
Q ss_pred ---------cCChhHHHHHHHHHHHcCCcc
Q 026320 77 ---------EIPEETLLRYVRLVKSAGLKA 97 (240)
Q Consensus 77 ---------~l~~~~r~~lI~~~~~~G~~v 97 (240)
.-+.++..+.++.+++.|+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 114 ESVLRIINRGKSFERVLEALERLKEAGIPR 143 (166)
T ss_dssp HHHHHHHSSTSHHHHHHHHHHHHHHTTSET
T ss_pred HHhhhhhcCCCCHHHHHHHHHHHHHcCCCc
Confidence 235567778999999999884
No 284
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=75.87 E-value=46 Score=30.93 Aligned_cols=138 Identities=14% Similarity=0.166 Sum_probs=84.0
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHH--HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 55 KEYVEDCKQVGFDTIELNVGSLEIPEETL--LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGti~l~~~~r--~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
.+++.+|-+.||+-|=+.--.+++.+-.+ .++++.|+..|.-|--|+|.=-+. +-+...+.. .. .-
T Consensus 90 ~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~-e~~~~~~~~-~~----------~~ 157 (288)
T TIGR00167 90 EEDCAQAVKAGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGE-EDGVSVADE-SA----------LY 157 (288)
T ss_pred HHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCc-cCCcccccc-cc----------cC
Confidence 47788888999999999765544433222 367788888999999999984221 111000000 00 11
Q ss_pred cCHHHHHHHHHHHHH-cCCcEEEEecc---ccccCCCC-ccHHHHHHHHhccCCCceEEecC-Cc-hhHHHHHHHhCCCc
Q 026320 133 EDVDLLIRRAERCLE-AGADMIMIDSD---DVCKHADS-LRADIIAKVIGRLGLEKTMFEAT-NP-RTSEWFIRRYGPKV 205 (240)
Q Consensus 133 ~~~~~~i~~~~~dLe-AGA~~ViiEar---gi~d~~g~-~r~d~v~~i~~~~~~~~lifEAP-~k-~qQ~~~I~~fG~~V 205 (240)
.||+ +++++++ -|.|.+-+==- |+|...-. ++.+.+++|-+.++.-=++==+. .+ +|....|+.==..|
T Consensus 158 T~pe----ea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 233 (288)
T TIGR00167 158 TDPE----EAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVNLPLVLHGGSGIPDEEIKKAISLGVVKV 233 (288)
T ss_pred CCHH----HHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 2555 5555554 59888877543 99987667 99999999988776322222222 23 34444454444567
Q ss_pred ccc
Q 026320 206 NLF 208 (240)
Q Consensus 206 NLg 208 (240)
|++
T Consensus 234 Ni~ 236 (288)
T TIGR00167 234 NID 236 (288)
T ss_pred EcC
Confidence 765
No 285
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=75.67 E-value=5.1 Score=37.29 Aligned_cols=61 Identities=21% Similarity=0.214 Sum_probs=34.2
Q ss_pred ccccChhHHHHHHHHHHhC---CceecC-CcHHHHHHHhC--CchHHHHHHHHHHcCCCEEEecCCcc
Q 026320 15 HSLMPKPFIEEVVKRAHQH---DVYVST-GDWAEHLIRNG--PSAFKEYVEDCKQVGFDTIELNVGSL 76 (240)
Q Consensus 15 s~l~p~~~l~eKi~l~~~~---gV~v~~-Gtl~E~a~~qg--~~~~~~yl~~~k~lGF~~IEISdGti 76 (240)
|..=....+.+.|+-.|+. ++.+.. =..-|.. ..+ ++..-++.+.+.+.|.++||||.|+.
T Consensus 194 slenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~-~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~ 260 (338)
T cd04733 194 SLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQ-RGGFTEEDALEVVEALEEAGVDLVELSGGTY 260 (338)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcC-CCCCCHHHHHHHHHHHHHcCCCEEEecCCCC
Confidence 4444556677888777754 222221 0011110 011 11334667777888999999999975
No 286
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=75.43 E-value=16 Score=29.90 Aligned_cols=102 Identities=22% Similarity=0.287 Sum_probs=59.2
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHc--C--CcccceeeeecCCCCCCCccccccccccccCCC
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA--G--LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 127 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~--G--~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 127 (240)
+.+.+.++++.+.|++.|++.- ++++.+++. | ..+. +|+-.+. + +
T Consensus 13 ~~~~~~~~~~~~~gv~gi~~~g-----------~~i~~~~~~~~~~~~~v~--~~v~~~~---~---------------~ 61 (201)
T cd00945 13 EDIAKLCDEAIEYGFAAVCVNP-----------GYVRLAADALAGSDVPVI--VVVGFPT---G---------------L 61 (201)
T ss_pred HHHHHHHHHHHHhCCcEEEECH-----------HHHHHHHHHhCCCCCeEE--EEecCCC---C---------------C
Confidence 4688888999999999999985 555555442 1 2222 2221100 0 0
Q ss_pred CcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCC--CccHHHHHHHHhcc--CCCceEEecC
Q 026320 128 STEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHAD--SLRADIIAKVIGRL--GLEKTMFEAT 189 (240)
Q Consensus 128 ~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g--~~r~d~v~~i~~~~--~~~~lifEAP 189 (240)
...++.++++++..++||+.|++-.---+...+ +.-.+.+.++.+.. ++--++.--|
T Consensus 62 -----~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p 122 (201)
T cd00945 62 -----TTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILET 122 (201)
T ss_pred -----CcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEEC
Confidence 126888999999999999999997642222221 11123344555553 4444444444
No 287
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=75.25 E-value=39 Score=26.68 Aligned_cols=88 Identities=22% Similarity=0.365 Sum_probs=63.8
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhC--Ccee--cC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYV--ST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE- 77 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~--gV~v--~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~- 77 (240)
++..+=|++|...+.+ .+.+.++.+++. ++.+ .+ |..+ + ++.++.+++.|++.|.+|=-+.+
T Consensus 44 ~~~~i~~~ggep~~~~--~~~~~i~~~~~~~~~~~~~i~T~~~~~------~----~~~~~~l~~~g~~~i~i~le~~~~ 111 (204)
T cd01335 44 GVEVVILTGGEPLLYP--ELAELLRRLKKELPGFEISIETNGTLL------T----EELLKELKELGLDGVGVSLDSGDE 111 (204)
T ss_pred CceEEEEeCCcCCccH--hHHHHHHHHHhhCCCceEEEEcCcccC------C----HHHHHHHHhCCCceEEEEcccCCH
Confidence 3455667888888887 688888888887 5544 34 3222 1 56777888889999999876652
Q ss_pred ----------CChhHHHHHHHHHHHcCCcccceeee
Q 026320 78 ----------IPEETLLRYVRLVKSAGLKAKPKFAV 103 (240)
Q Consensus 78 ----------l~~~~r~~lI~~~~~~G~~v~~E~g~ 103 (240)
.+.++..+.|+++++.|..+.+.+-+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 147 (204)
T cd01335 112 EVADKIRGSGESFKERLEALKELREAGLGLSTTLLV 147 (204)
T ss_pred HHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEE
Confidence 34478888999999988887776655
No 288
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=75.16 E-value=21 Score=31.76 Aligned_cols=19 Identities=5% Similarity=-0.055 Sum_probs=15.4
Q ss_pred HHHHHHHHHcCCcEEEEec
Q 026320 139 IRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 139 i~~~~~dLeAGA~~ViiEa 157 (240)
.+++++.++.|++-||..+
T Consensus 234 ~~~~~~l~~~GVdgIiTD~ 252 (252)
T cd08574 234 PWLYSLLWCSGVQSVTTNA 252 (252)
T ss_pred HHHHHHHHHcCCCEEecCc
Confidence 3567888999999999764
No 289
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=75.02 E-value=24 Score=32.34 Aligned_cols=74 Identities=22% Similarity=0.248 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC------------ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEI------------PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 120 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l------------~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~ 120 (240)
.+.++.+.+.+.|+++||++=|+-.. ..+.-.++++.+++.- -+| +.+|-.
T Consensus 114 ~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~P-v~vKl~-------------- 176 (299)
T cd02940 114 DWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV--KIP-VIAKLT-------------- 176 (299)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc--CCC-eEEECC--------------
Confidence 44555566666799999998776442 3455667787777631 123 555521
Q ss_pred ccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEE
Q 026320 121 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 155 (240)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~Vii 155 (240)
| +..++.+.++...++||+.|++
T Consensus 177 ---~---------~~~~~~~~a~~~~~~Gadgi~~ 199 (299)
T cd02940 177 ---P---------NITDIREIARAAKEGGADGVSA 199 (299)
T ss_pred ---C---------CchhHHHHHHHHHHcCCCEEEE
Confidence 0 1235567777788999999984
No 290
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=74.92 E-value=8.6 Score=35.61 Aligned_cols=74 Identities=8% Similarity=0.101 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHhCCceec--CCcHHHHHHHhCCc----hHHHHHHHHHHcCCCEEEecCCcccCC----hhHHHHHHHH
Q 026320 20 KPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPS----AFKEYVEDCKQVGFDTIELNVGSLEIP----EETLLRYVRL 89 (240)
Q Consensus 20 ~~~l~eKi~l~~~~gV~v~--~Gtl~E~a~~qg~~----~~~~yl~~~k~lGF~~IEISdGti~l~----~~~r~~lI~~ 89 (240)
...+...|.-+|+.|++|. .|||-...+.+... -++.|.+.++.+||+.|.|.==.-... .+.+.++|+.
T Consensus 53 ~~~~~~~i~~lk~~G~kViiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~ 132 (294)
T cd06543 53 GGWIKSDIAALRAAGGDVIVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALAL 132 (294)
T ss_pred chhHHHHHHHHHHcCCeEEEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHH
Confidence 4568889999999999665 48775544443322 256788899999999999832211122 2667888888
Q ss_pred HHHc
Q 026320 90 VKSA 93 (240)
Q Consensus 90 ~~~~ 93 (240)
++++
T Consensus 133 Lq~~ 136 (294)
T cd06543 133 LQKE 136 (294)
T ss_pred HHHH
Confidence 8874
No 291
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=74.77 E-value=18 Score=34.51 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 134 DVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
++++.++.++..-++|+|+|-|=++
T Consensus 250 ~~e~~~~~~~~l~~~gvD~l~vs~g 274 (382)
T cd02931 250 DLEEGLKAAKILEEAGYDALDVDAG 274 (382)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 6788888898888999999988654
No 292
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=74.69 E-value=6.1 Score=36.56 Aligned_cols=109 Identities=17% Similarity=0.194 Sum_probs=61.1
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcc------------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGSL------------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 119 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGti------------~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~ 119 (240)
+..++|++.|.++||++|-|.+|=- ..+..+..++|+.++++|-.|.-=..- +.+ .....+
T Consensus 32 ~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~-----~~~-~~~~~~- 104 (273)
T PF10566_consen 32 ETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHS-----ETG-GNVANL- 104 (273)
T ss_dssp HHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEEC-----CHT-TBHHHH-
T ss_pred HHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeC-----Ccc-hhhHhH-
Confidence 3689999999999999999999874 578889999999999997544321111 110 000000
Q ss_pred cccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceE
Q 026320 120 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 185 (240)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~li 185 (240)
+ .++-+..++.=+.|+.=|=| +.++.++...-..-++|++.---.+||
T Consensus 105 -------------~--~~~~~~f~~~~~~Gv~GvKi---dF~~~d~Q~~v~~y~~i~~~AA~~~Lm 152 (273)
T PF10566_consen 105 -------------E--KQLDEAFKLYAKWGVKGVKI---DFMDRDDQEMVNWYEDILEDAAEYKLM 152 (273)
T ss_dssp -------------H--CCHHHHHHHHHHCTEEEEEE---E--SSTSHHHHHHHHHHHHHHHHTT-E
T ss_pred -------------H--HHHHHHHHHHHHcCCCEEee---CcCCCCCHHHHHHHHHHHHHHHHcCcE
Confidence 0 01233334444667665554 356666766666666666543334444
No 293
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=74.36 E-value=4.9 Score=34.72 Aligned_cols=70 Identities=24% Similarity=0.318 Sum_probs=42.5
Q ss_pred HHHHHHcCCCEEEecCCcccCCh---hHHHHHHHHHHHc--C--CcccceeeeecCCCCCCCccccccccccccCCCCcc
Q 026320 58 VEDCKQVGFDTIELNVGSLEIPE---ETLLRYVRLVKSA--G--LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 130 (240)
Q Consensus 58 l~~~k~lGF~~IEISdGti~l~~---~~r~~lI~~~~~~--G--~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~ 130 (240)
.++|-++|-|.|++.=..-.+.. +.-.+-|..+++. | ++|+-|.+.
T Consensus 75 ve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~--------------------------- 127 (203)
T cd00959 75 AREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGL--------------------------- 127 (203)
T ss_pred HHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCC---------------------------
Confidence 78889999999998654433311 2122333333332 2 233222222
Q ss_pred cccCHHHHHHHHHHHHHcCCcEEEEe
Q 026320 131 YVEDVDLLIRRAERCLEAGADMIMID 156 (240)
Q Consensus 131 ~~~~~~~~i~~~~~dLeAGA~~ViiE 156 (240)
-+++++..-.+-..++|||+|=+-
T Consensus 128 --l~~~~i~~a~ria~e~GaD~IKTs 151 (203)
T cd00959 128 --LTDEEIIKACEIAIEAGADFIKTS 151 (203)
T ss_pred --CCHHHHHHHHHHHHHhCCCEEEcC
Confidence 035788888999999999998775
No 294
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=74.26 E-value=19 Score=31.16 Aligned_cols=18 Identities=33% Similarity=0.597 Sum_probs=14.3
Q ss_pred HHHHHHHHHcCCcEEEEe
Q 026320 139 IRRAERCLEAGADMIMID 156 (240)
Q Consensus 139 i~~~~~dLeAGA~~ViiE 156 (240)
.+.+++.+++||+-|++=
T Consensus 189 ~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 189 PEQAAKALELGADAVVVG 206 (219)
T ss_pred HHHHHHHHHCCCCEEEEc
Confidence 366777788999999983
No 295
>KOG2949 consensus Ketopantoate hydroxymethyltransferase [Coenzyme transport and metabolism]
Probab=74.21 E-value=18 Score=33.48 Aligned_cols=98 Identities=18% Similarity=0.259 Sum_probs=73.4
Q ss_pred CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 026320 40 GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 119 (240)
Q Consensus 40 Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~ 119 (240)
|| +|--+.+ .++.-++-.|+-|.|.|-|--|+ .-+..++++..++|.-|.-.+|.--. .-..+|
T Consensus 109 gt-yeS~~sd---a~knAv~vmk~~g~~~vK~EgGs-----~~~~~~~~~l~ergipV~gHvGLTPQ-------~v~~lG 172 (306)
T KOG2949|consen 109 GT-YESSWSD---AVKNAVRVMKEGGMDAVKLEGGS-----NSRITAAKRLVERGIPVMGHVGLTPQ-------AVSVLG 172 (306)
T ss_pred cc-ccccHHH---HHHHHHHHHHhcCCceEEEccCc-----HHHHHHHHHHHHcCCceeeeccCChh-------hhhhcc
Confidence 44 4666666 58888889999999999999998 67788999999999999999988422 112223
Q ss_pred cccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 120 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
.|-. . -.......+++|.+-.-=++|++.|.+|-
T Consensus 173 Gyk~-Q---Gr~~~~a~~l~EtAmqLqk~Gc~svvlEC 206 (306)
T KOG2949|consen 173 GYKP-Q---GRNIASAVKLVETAMQLQKAGCFSVVLEC 206 (306)
T ss_pred CcCc-c---chhHHHHHHHHHHHHHHHhcccceEeeec
Confidence 2211 0 01123567889999999999999999997
No 296
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=74.17 E-value=14 Score=33.97 Aligned_cols=115 Identities=17% Similarity=0.285 Sum_probs=72.5
Q ss_pred HHHcCCCEEEecCC----------cccCChhHHHHHHHHHHHcCCcccceeeeecC--CCCCCCccccccccccccCCCC
Q 026320 61 CKQVGFDTIELNVG----------SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFN--KSDIPSDRDRAFGAYVARAPRS 128 (240)
Q Consensus 61 ~k~lGF~~IEISdG----------ti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~--~~evg~~~d~~~~~~~~~~~~~ 128 (240)
+.+.||++|=+.|. +..++.++.+..++.+.+. .+.+ ..++ .|+.+
T Consensus 31 ~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~---------~~~p~vvaD~------pfg~y------- 88 (264)
T PRK00311 31 FDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARG---------APRALVVADM------PFGSY------- 88 (264)
T ss_pred HHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhc---------CCCCcEEEeC------CCCCc-------
Confidence 35569999977543 4578999999999888772 2211 0111 12211
Q ss_pred cccccCHHHHHHHHHHHHH-cCCcEEEEecc-------------c--------c----------ccCCCCccHHHHHHHH
Q 026320 129 TEYVEDVDLLIRRAERCLE-AGADMIMIDSD-------------D--------V----------CKHADSLRADIIAKVI 176 (240)
Q Consensus 129 ~~~~~~~~~~i~~~~~dLe-AGA~~ViiEar-------------g--------i----------~d~~g~~r~d~v~~i~ 176 (240)
..++++.++.+.+.++ +||+.|-||.- | + |.-.|+ ..+..++++
T Consensus 89 ---~~~~~~av~~a~r~~~~aGa~aVkiEdg~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~gr-t~~~a~~~i 164 (264)
T PRK00311 89 ---QASPEQALRNAGRLMKEAGAHAVKLEGGEEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGR-DEEAAEKLL 164 (264)
T ss_pred ---cCCHHHHHHHHHHHHHHhCCeEEEEcCcHHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecC-CHHHHHHHH
Confidence 1257888999999999 99999999983 3 1 222232 122233333
Q ss_pred ------hccCCCceEEecCCchhHHHHHHHh
Q 026320 177 ------GRLGLEKTMFEATNPRTSEWFIRRY 201 (240)
Q Consensus 177 ------~~~~~~~lifEAP~k~qQ~~~I~~f 201 (240)
...|.+-|..|++..++-..+-++.
T Consensus 165 ~ra~a~~eAGA~~i~lE~v~~~~~~~i~~~l 195 (264)
T PRK00311 165 EDAKALEEAGAFALVLECVPAELAKEITEAL 195 (264)
T ss_pred HHHHHHHHCCCCEEEEcCCCHHHHHHHHHhC
Confidence 5678999999999665555554544
No 297
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=73.86 E-value=28 Score=32.66 Aligned_cols=80 Identities=21% Similarity=0.207 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHcC--CCEEEecCCcccC-------ChhHHHHHHHHHHHcCCcc----cceeeeecCCCCCCCccccccc
Q 026320 53 AFKEYVEDCKQVG--FDTIELNVGSLEI-------PEETLLRYVRLVKSAGLKA----KPKFAVMFNKSDIPSDRDRAFG 119 (240)
Q Consensus 53 ~~~~yl~~~k~lG--F~~IEISdGti~l-------~~~~r~~lI~~~~~~G~~v----~~E~g~k~~~~evg~~~d~~~~ 119 (240)
..++|.+.+++++ +|++|++=++-.. ..+.-.++++.+++. ... +| +.+|-.
T Consensus 155 ~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~-~~~~~~~~P-V~vKls------------- 219 (344)
T PRK05286 155 AVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEA-QAELHGYVP-LLVKIA------------- 219 (344)
T ss_pred CHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHH-HhccccCCc-eEEEeC-------------
Confidence 6788888888888 9999998654332 334455677777763 000 22 444421
Q ss_pred cccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 120 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
|. + +.+++.+.++...++||+.|++=.+
T Consensus 220 ----p~-~------~~~~~~~ia~~l~~~Gadgi~~~nt 247 (344)
T PRK05286 220 ----PD-L------SDEELDDIADLALEHGIDGVIATNT 247 (344)
T ss_pred ----CC-C------CHHHHHHHHHHHHHhCCcEEEEeCC
Confidence 11 1 2456788888889999999999876
No 298
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=73.63 E-value=17 Score=32.14 Aligned_cols=84 Identities=11% Similarity=0.069 Sum_probs=54.3
Q ss_pred ChhHHHHHHHHHHhCCceecCC--cH---H------HHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc--CC------
Q 026320 19 PKPFIEEVVKRAHQHDVYVSTG--DW---A------EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--IP------ 79 (240)
Q Consensus 19 p~~~l~eKi~l~~~~gV~v~~G--tl---~------E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~--l~------ 79 (240)
+++.+++.-++++++|+.++.. +. + +..-.+.-+.+++.++.|+.+|.++|=+..+... .+
T Consensus 55 ~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~ 134 (283)
T PRK13209 55 SREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRR 134 (283)
T ss_pred CHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccccccccHHHHHH
Confidence 4556888899999999987531 11 1 1111111126889999999999999987644321 11
Q ss_pred --hhHHHHHHHHHHHcCCcccceee
Q 026320 80 --EETLLRYVRLVKSAGLKAKPKFA 102 (240)
Q Consensus 80 --~~~r~~lI~~~~~~G~~v~~E~g 102 (240)
.+...++.+.+++.|.++.-|..
T Consensus 135 ~~~~~l~~l~~~A~~~GV~i~iE~~ 159 (283)
T PRK13209 135 RFIDGLKESVELASRASVTLAFEIM 159 (283)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEeec
Confidence 12235677888888888777764
No 299
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=73.55 E-value=32 Score=31.46 Aligned_cols=103 Identities=15% Similarity=0.183 Sum_probs=62.7
Q ss_pred HHHHHHHHHhCCceecCC----cHHHHHHHh-------------CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHH
Q 026320 23 IEEVVKRAHQHDVYVSTG----DWAEHLIRN-------------GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLR 85 (240)
Q Consensus 23 l~eKi~l~~~~gV~v~~G----tl~E~a~~q-------------g~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~ 85 (240)
=......+.++|+....| +-+|..... ++....+.++.+++.|+++|+++-|..........+
T Consensus 83 ~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~ 162 (299)
T cd02809 83 ELATARAAAAAGIPFTLSTVSTTSLEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWD 162 (299)
T ss_pred HHHHHHHHHHcCCCEEecCCCcCCHHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCHH
Confidence 356667788888855422 223333222 334566778888999999999988765321111124
Q ss_pred HHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccc
Q 026320 86 YVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD 159 (240)
Q Consensus 86 lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarg 159 (240)
.|+.+++. + .| +.+|. + .+ .+.+++..++||+.|++-++|
T Consensus 163 ~i~~l~~~~~---~p-vivK~----v----------------------~s----~~~a~~a~~~G~d~I~v~~~g 203 (299)
T cd02809 163 DLAWLRSQWK---GP-LILKG----I----------------------LT----PEDALRAVDAGADGIVVSNHG 203 (299)
T ss_pred HHHHHHHhcC---CC-EEEee----c----------------------CC----HHHHHHHHHCCCCEEEEcCCC
Confidence 56666653 2 12 33331 1 01 455788889999999998875
No 300
>PLN02428 lipoic acid synthase
Probab=73.48 E-value=24 Score=33.84 Aligned_cols=75 Identities=21% Similarity=0.306 Sum_probs=55.2
Q ss_pred HHHHHHHHHcCCCEEEecCCc----------ccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCcccccccccc
Q 026320 55 KEYVEDCKQVGFDTIELNVGS----------LEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYV 122 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGt----------i~l~~~~r~~lI~~~~~~--G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 122 (240)
++-++..++.|++.+=.+--| -..+.++++++++.+++. |+.+++ |...+..
T Consensus 195 ~elL~~L~eAG~d~i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkS--g~MvGLG-------------- 258 (349)
T PLN02428 195 LGAVETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKT--SIMLGLG-------------- 258 (349)
T ss_pred HHHHHHHHHcCCCEEccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEE--eEEEecC--------------
Confidence 567888888888886655444 125678889999999998 888766 4433332
Q ss_pred ccCCCCcccccCHHHHHHHHHHHHHcCCcEEEE
Q 026320 123 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 155 (240)
Q Consensus 123 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~Vii 155 (240)
++.+++++.+..-.+.|.+.|.+
T Consensus 259 ----------ET~Edv~e~l~~Lrelgvd~vti 281 (349)
T PLN02428 259 ----------ETDEEVVQTMEDLRAAGVDVVTF 281 (349)
T ss_pred ----------CCHHHHHHHHHHHHHcCCCEEee
Confidence 13688888888888999999876
No 301
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=73.33 E-value=5.2 Score=34.65 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCCCEEEecC---------Ccc-----cC-----ChhHHHHHHHHHHHcCCcccceeeee
Q 026320 54 FKEYVEDCKQVGFDTIELNV---------GSL-----EI-----PEETLLRYVRLVKSAGLKAKPKFAVM 104 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISd---------Gti-----~l-----~~~~r~~lI~~~~~~G~~v~~E~g~k 104 (240)
+.+=|+++++|||++|++|- |.- .+ +.++..+||+.++++|++|+-.+-..
T Consensus 6 i~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~N 75 (316)
T PF00128_consen 6 IIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPN 75 (316)
T ss_dssp HHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETS
T ss_pred HHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeecc
Confidence 34446788899999999862 111 11 24788999999999999998877664
No 302
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=73.17 E-value=19 Score=33.57 Aligned_cols=116 Identities=14% Similarity=0.290 Sum_probs=73.5
Q ss_pred HHHHHHHHhCCcee------cCCc--HHHHHHHhCCchHHHHHHHHHHcC-CCEEEecCCcccCChhHHHHHHHHHHHcC
Q 026320 24 EEVVKRAHQHDVYV------STGD--WAEHLIRNGPSAFKEYVEDCKQVG-FDTIELNVGSLEIPEETLLRYVRLVKSAG 94 (240)
Q Consensus 24 ~eKi~l~~~~gV~v------~~Gt--l~E~a~~qg~~~~~~yl~~~k~lG-F~~IEISdGti~l~~~~r~~lI~~~~~~G 94 (240)
++-++.+...++.+ .||. |-.+|+.-|. .. -+++| .|.|=|-|.-+.+-- .-.+.|+++++.
T Consensus 126 ~~~v~~~~~~~~~i~~TRKT~Pg~R~l~k~AV~~GG-G~------~HR~gLsd~ilIkdNHi~~~G-~i~~ai~~~r~~- 196 (289)
T PRK07896 126 AAWVDAVAGTKAKIRDTRKTLPGLRALQKYAVRCGG-GV------NHRMGLGDAALIKDNHVAAAG-SVVAALRAVRAA- 196 (289)
T ss_pred HHHHHHhcCCCeEEEecCCCCCcchHHHHHHHHhCC-Cc------cccCCCcceeeecHHHHHHhC-cHHHHHHHHHHh-
Confidence 34444555555544 4674 7777887762 22 26778 788888887765543 345678888774
Q ss_pred CcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHH
Q 026320 95 LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAK 174 (240)
Q Consensus 95 ~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~ 174 (240)
.|+..+ .-|+ ++ .+++...+++|||.||.+ |+..+.+.+
T Consensus 197 ---~~~~kI---eVEv----------------------~t----l~ea~eal~~gaDiI~LD---------nm~~e~vk~ 235 (289)
T PRK07896 197 ---APDLPC---EVEV----------------------DS----LEQLDEVLAEGAELVLLD---------NFPVWQTQE 235 (289)
T ss_pred ---CCCCCE---EEEc----------------------CC----HHHHHHHHHcCCCEEEeC---------CCCHHHHHH
Confidence 121111 0011 13 567777899999999997 778888888
Q ss_pred HHhccC--CCceEEecC
Q 026320 175 VIGRLG--LEKTMFEAT 189 (240)
Q Consensus 175 i~~~~~--~~~lifEAP 189 (240)
.++.+. ..++..||.
T Consensus 236 av~~~~~~~~~v~ieaS 252 (289)
T PRK07896 236 AVQRRDARAPTVLLESS 252 (289)
T ss_pred HHHHHhccCCCEEEEEE
Confidence 886542 456778887
No 303
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=72.99 E-value=57 Score=30.20 Aligned_cols=154 Identities=14% Similarity=0.185 Sum_probs=88.2
Q ss_pred ecCccccccChhHHHHHHHHHHhCCceecC----Cc--HH--HHHHHhC---------C-------chHHHHHHHHHHcC
Q 026320 10 FSGGSHSLMPKPFIEEVVKRAHQHDVYVST----GD--WA--EHLIRNG---------P-------SAFKEYVEDCKQVG 65 (240)
Q Consensus 10 fg~GTs~l~p~~~l~eKi~l~~~~gV~v~~----Gt--l~--E~a~~qg---------~-------~~~~~yl~~~k~lG 65 (240)
++-|.+-+++-+.++.-++-+.+.+.++-- ++ ++ +.+...- | ..--+.+..|-+.|
T Consensus 17 yAV~AfN~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~vPValHLDH~~~~e~i~~ai~~G 96 (287)
T PF01116_consen 17 YAVPAFNVYNLETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEASVPVALHLDHGKDFEDIKRAIDAG 96 (287)
T ss_dssp -BEEEEE-SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHSTSEEEEEEEEE-SHHHHHHHHHHT
T ss_pred CeEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcCCCEEeecccCCCHHHHHHHHHhC
Confidence 344555566666666666666666664432 21 11 2221100 0 02245677788889
Q ss_pred CCEEEecCCcccCChhHH----HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHH
Q 026320 66 FDTIELNVGSLEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRR 141 (240)
Q Consensus 66 F~~IEISdGti~l~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~ 141 (240)
|+-|=+.-- .+|.++= +++++.++..|.-|--|+|.--+. |-+...+.. ....-.||++..+.
T Consensus 97 ftSVM~DgS--~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~-ed~~~~~~~----------~~~~~TdP~~a~~F 163 (287)
T PF01116_consen 97 FTSVMIDGS--ALPFEENIAITREVVEYAHAYGVSVEAELGHIGGK-EDGIESEEE----------TESLYTDPEEAKEF 163 (287)
T ss_dssp SSEEEEE-T--TS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSS-CTTCSSSTT-----------TTCSSSHHHHHHH
T ss_pred cccccccCC--cCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeecc-CCCcccccc----------ccccccCHHHHHHH
Confidence 999977544 4444442 467788899999999999984321 111000000 01122378887777
Q ss_pred HHHHHHcCCcEEEEecc---ccccC--CCCccHHHHHHHHhcc
Q 026320 142 AERCLEAGADMIMIDSD---DVCKH--ADSLRADIIAKVIGRL 179 (240)
Q Consensus 142 ~~~dLeAGA~~ViiEar---gi~d~--~g~~r~d~v~~i~~~~ 179 (240)
++ +-|+|.+=+==- |.|.. .-+++-+.+++|-+.+
T Consensus 164 v~---~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~ 203 (287)
T PF01116_consen 164 VE---ETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAV 203 (287)
T ss_dssp HH---HHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHH
T ss_pred HH---HhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhc
Confidence 76 569998655432 89999 7889999999999887
No 304
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=72.98 E-value=32 Score=37.83 Aligned_cols=103 Identities=21% Similarity=0.197 Sum_probs=75.0
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 131 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 131 (240)
+-++.|++.+.+-|+|.+-|=|..=++++=. ..|+.+++.|..+ |..+-.-. ++ -|+. + |
T Consensus 625 ~vv~~f~~~~~~~GidifrifD~lN~~~n~~--~~~~~~~~~g~~~--~~~i~yt~-~~---~d~~--~---~------- 684 (1143)
T TIGR01235 625 NVVKYFVKQAAQGGIDIFRVFDSLNWVENMR--VGMDAVAEAGKVV--EAAICYTG-DI---LDPA--R---P------- 684 (1143)
T ss_pred HHHHHHHHHHHHcCCCEEEECccCcCHHHHH--HHHHHHHHcCCEE--EEEEEEec-cC---CCcC--C---C-------
Confidence 4588999999999999999999888776654 5899999999754 44443211 11 1110 0 0
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 132 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 132 ~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
.-|++.+++.++.-.++||+.| .|.|-.|-.++..+.++++.+
T Consensus 685 ~~~l~y~~~~ak~l~~~Gad~I-----~ikDt~Gll~P~~~~~Lv~~l 727 (1143)
T TIGR01235 685 KYDLKYYTNLAVELEKAGAHIL-----GIKDMAGLLKPAAAKLLIKAL 727 (1143)
T ss_pred CCCHHHHHHHHHHHHHcCCCEE-----EECCCcCCcCHHHHHHHHHHH
Confidence 1258889999999999999876 467888888888777777554
No 305
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=72.67 E-value=75 Score=28.98 Aligned_cols=153 Identities=16% Similarity=0.178 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHhCCc---eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE-Eec--CC--cccCChhHHHHHHHHHHH
Q 026320 21 PFIEEVVKRAHQHDV---YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI-ELN--VG--SLEIPEETLLRYVRLVKS 92 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV---~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~I-EIS--dG--ti~l~~~~r~~lI~~~~~ 92 (240)
..+.+=++.|++.|. .++-|++ + +... .-.++++.+++.||.+. |+. +. ...++.+++.+.+++.-+
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEiS~G~~-~--i~~~--~~~rlI~~~~~~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~Le 145 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEISDGSM-E--ISLE--ERCNLIERAKDNGFMVLSEVGKKSPEKDSELTPDDRIKLINKDLE 145 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEEcCCcc-C--CCHH--HHHHHHHHHHhCCCeEeccccccCCcccccCCHHHHHHHHHHHHH
Confidence 455555559999997 4455643 2 1222 45678899998888775 221 11 225888999999998899
Q ss_pred cCCc-cccee---eeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCcc
Q 026320 93 AGLK-AKPKF---AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLR 168 (240)
Q Consensus 93 ~G~~-v~~E~---g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r 168 (240)
+|=. |+-|= |+- +|.-++ ...| -.+.+..+-. +.|-++||-||- .
T Consensus 146 AGA~~ViiEarEsg~~-----~Gi~~~--------~g~~-------r~d~v~~i~~--~l~~eklifEAp---------~ 194 (237)
T TIGR03849 146 AGADYVIIEGRESGKN-----IGLFDE--------KGNV-------KEDELDVLAE--NVDINKVIFEAP---------Q 194 (237)
T ss_pred CCCcEEEEeehhcCCC-----cceeCC--------CCCC-------chHHHHHHHh--hCChhcEEEECC---------C
Confidence 8864 44432 110 010000 0112 2444555554 478999999996 2
Q ss_pred HHHHHHHHhccCCCceE-EecCCchhHHHHHHHhCCCcccccCCCCchhhhhhhCccCCC
Q 026320 169 ADIIAKVIGRLGLEKTM-FEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGK 227 (240)
Q Consensus 169 ~d~v~~i~~~~~~~~li-fEAP~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G~ 227 (240)
++.-..++.++|++-=+ +=+|.--.+-.=+++ .||++||||
T Consensus 195 k~~q~~~I~~~G~~VNL~NI~~~evi~LE~LR~------------------GLrgDT~~k 236 (237)
T TIGR03849 195 KNQQVEFILKFGPDVNLGNIPPEEVISLETLRR------------------GLRGDTFGK 236 (237)
T ss_pred HHHHHHHHHHhCCCcccccCCHHHHHHHHHHhc------------------ccccccccc
Confidence 45555666666644222 233433334443443 688888886
No 306
>PRK12999 pyruvate carboxylase; Reviewed
Probab=72.62 E-value=26 Score=38.49 Aligned_cols=99 Identities=8% Similarity=0.076 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
.+-++.+.+.++|.+.|=|.|-.--+.+..-.++|+.++++= .+ .++... +
T Consensus 692 ~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~-~i--pi~~H~-H------------------------- 742 (1146)
T PRK12999 692 YYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEV-DL--PIHLHT-H------------------------- 742 (1146)
T ss_pred HHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHc-CC--eEEEEe-C-------------------------
Confidence 344556667778999999999888888888888888888741 11 233322 1
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~ 180 (240)
.|...-+-..-..++|||+.|=+=-.|+-...|+...+.+-..+...+
T Consensus 743 nt~Gla~an~laA~~aGad~vD~av~glg~~tgn~~le~vv~~L~~~~ 790 (1146)
T PRK12999 743 DTSGNGLATYLAAAEAGVDIVDVAVASMSGLTSQPSLNSIVAALEGTE 790 (1146)
T ss_pred CCCchHHHHHHHHHHhCCCEEEecchhhcCCcCCHHHHHHHHHHHhcC
Confidence 123344677778899999976555558877788887776666665544
No 307
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=72.47 E-value=35 Score=30.52 Aligned_cols=45 Identities=22% Similarity=0.219 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCCCEEEecCC----cc-----cCChhHHHHHHHHHHHcCCcccc
Q 026320 55 KEYVEDCKQVGFDTIELNVG----SL-----EIPEETLLRYVRLVKSAGLKAKP 99 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdG----ti-----~l~~~~r~~lI~~~~~~G~~v~~ 99 (240)
++.++.+|+.|++.|-++-- +. .-+.+++.+.++.++++|+++.+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCS 176 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 67777888888887433211 11 12456777788888888877554
No 308
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=72.46 E-value=63 Score=30.72 Aligned_cols=188 Identities=14% Similarity=0.225 Sum_probs=109.9
Q ss_pred ecCccccccChhHHHHHHHHHHhCCceec----------CC-cHHHHHH------HhC-----C-------chHHHHHHH
Q 026320 10 FSGGSHSLMPKPFIEEVVKRAHQHDVYVS----------TG-DWAEHLI------RNG-----P-------SAFKEYVED 60 (240)
Q Consensus 10 fg~GTs~l~p~~~l~eKi~l~~~~gV~v~----------~G-tl~E~a~------~qg-----~-------~~~~~yl~~ 60 (240)
++-|.+-+++-+.++.-|+-|.+.+-++- .| ++++.+. ++. | ..--+.+..
T Consensus 24 yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~~VPV~lHLDHg~~~e~i~~ 103 (321)
T PRK07084 24 YAIPAYNFNNMEQLQAIIQACVETKSPVILQVSKGARKYANATLLRYMAQGAVEYAKELGCPIPIVLHLDHGDSFELCKD 103 (321)
T ss_pred ceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHHhhCCchHHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHH
Confidence 45566666666677777777766665432 12 2233222 110 1 112456788
Q ss_pred HHHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHH
Q 026320 61 CKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 138 (240)
Q Consensus 61 ~k~lGF~~IEISdGti~l~~~~--r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~ 138 (240)
|-+.||+-|=+.--.+++.+-. =.++++.|+..|.-|--|+|.-.+ .+|...+. ...-.||++.
T Consensus 104 ai~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg------~ed~~~~~--------~~~~T~peeA 169 (321)
T PRK07084 104 CIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAG------VEDEVSAE--------HHTYTQPEEV 169 (321)
T ss_pred HHHcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecC------ccCCccCc--------ccccCCHHHH
Confidence 8899999999976554433322 246788888999999999998421 11110000 0012267666
Q ss_pred HHHHHHHHHcCCcEEEEec---cccccC-----CCCccHHHHHHHHhccC-CCceEEecC-CchhHHHHHHHhCCCc--c
Q 026320 139 IRRAERCLEAGADMIMIDS---DDVCKH-----ADSLRADIIAKVIGRLG-LEKTMFEAT-NPRTSEWFIRRYGPKV--N 206 (240)
Q Consensus 139 i~~~~~dLeAGA~~ViiEa---rgi~d~-----~g~~r~d~v~~i~~~~~-~~~lifEAP-~k~qQ~~~I~~fG~~V--N 206 (240)
.+.+++ -|+|.+-+== -|.|.. .-+++-|.+++|-+.++ .--++==+. .|..-.--|..||.+. |
T Consensus 170 ~~Fv~~---TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~~~~~ 246 (321)
T PRK07084 170 EDFVKK---TGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGKLKDA 246 (321)
T ss_pred HHHHHH---hCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCccccC
Confidence 666653 5888776643 289986 34699999999988773 333333333 3444455577777554 3
Q ss_pred cccCCCCc
Q 026320 207 LFVDHSQV 214 (240)
Q Consensus 207 LgI~~~dV 214 (240)
.||+.+|+
T Consensus 247 ~Gi~~e~~ 254 (321)
T PRK07084 247 IGIPEEQL 254 (321)
T ss_pred CCCCHHHH
Confidence 35666664
No 309
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=72.39 E-value=22 Score=34.00 Aligned_cols=74 Identities=27% Similarity=0.357 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc------------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLE------------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 120 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~------------l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~ 120 (240)
.+.+|.+.+++.|+++||++=+.-. -..+.-.++++.+++.- -+| +.+|-.
T Consensus 114 ~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~--~~P-v~vKl~-------------- 176 (420)
T PRK08318 114 EWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS--RLP-VIVKLT-------------- 176 (420)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc--CCc-EEEEcC--------------
Confidence 5778888888999999999877633 24456677888887741 134 455531
Q ss_pred ccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEE
Q 026320 121 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 155 (240)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~Vii 155 (240)
| +...+.+.++...++||+-|++
T Consensus 177 ---p---------~~~~~~~~a~~~~~~Gadgi~~ 199 (420)
T PRK08318 177 ---P---------NITDIREPARAAKRGGADAVSL 199 (420)
T ss_pred ---C---------CcccHHHHHHHHHHCCCCEEEE
Confidence 1 1223456667778999999983
No 310
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=72.38 E-value=19 Score=32.39 Aligned_cols=69 Identities=22% Similarity=0.262 Sum_probs=42.1
Q ss_pred CchHHHHHHHHHH-cCCC--EEEecCCcccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCccccccccccccC
Q 026320 51 PSAFKEYVEDCKQ-VGFD--TIELNVGSLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 125 (240)
Q Consensus 51 ~~~~~~yl~~~k~-lGF~--~IEISdGti~l~~~~r~~lI~~~~~~--G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 125 (240)
+..+..|...+.+ +||. ++|-|.|.-+--+ .++|+++++. +..+..=+|+
T Consensus 134 ~~~~aa~~~lA~~~~g~~~vYlE~gs~~g~~v~---~e~i~~v~~~~~~~pl~vGGGI---------------------- 188 (223)
T TIGR01768 134 KEDLAAYAAMAEEMLGMPIIYLEAGSGAPEPVP---PELVAEVKKVLDKARLFVGGGI---------------------- 188 (223)
T ss_pred cHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcC---HHHHHHHHHHcCCCCEEEecCC----------------------
Confidence 3456667777777 7888 6687877743322 3345555542 2222222222
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEE
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMI 155 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~Vii 155 (240)
++ .+++++-+++|||.|++
T Consensus 189 -------rs----~e~a~~l~~aGAD~VVV 207 (223)
T TIGR01768 189 -------RS----VEKAREMAEAGADTIVT 207 (223)
T ss_pred -------CC----HHHHHHHHHcCCCEEEE
Confidence 12 57788889999999999
No 311
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=72.32 E-value=58 Score=30.29 Aligned_cols=154 Identities=11% Similarity=0.165 Sum_probs=91.8
Q ss_pred ecCccccccChhHHHHHHHHHHhCCceec----CCcH----HHHH------HHhC---C-------chHHHHHHHHHHcC
Q 026320 10 FSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGDW----AEHL------IRNG---P-------SAFKEYVEDCKQVG 65 (240)
Q Consensus 10 fg~GTs~l~p~~~l~eKi~l~~~~gV~v~----~Gtl----~E~a------~~qg---~-------~~~~~yl~~~k~lG 65 (240)
++-|.+-+++-+.++.-|+-|.+.+.++. +|++ ++.+ +++. | ..=-+.+..|-+.|
T Consensus 18 yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~G 97 (286)
T PRK12738 18 YAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAG 97 (286)
T ss_pred ceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcC
Confidence 45566666666667777777666665432 1211 1110 0110 0 11234667788999
Q ss_pred CCEEEecCCcccCChhHH----HHHHHHHHHcCCcccceeeeecCCCCCCCcccc-ccccccccCCCCcccccCHHHHHH
Q 026320 66 FDTIELNVGSLEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDR-AFGAYVARAPRSTEYVEDVDLLIR 140 (240)
Q Consensus 66 F~~IEISdGti~l~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~-~~~~~~~~~~~~~~~~~~~~~~i~ 140 (240)
|+-|=+.--. +|.++= +++++.|+..|.-|--|+|.=-+ ++|. .... ....-.||++..+
T Consensus 98 FtSVM~DgS~--lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg------~ed~~~~~~-------~~~~~T~peea~~ 162 (286)
T PRK12738 98 VRSAMIDGSH--FPFAENVKLVKSVVDFCHSQDCSVEAELGRLGG------VEDDMSVDA-------ESAFLTDPQEAKR 162 (286)
T ss_pred CCeEeecCCC--CCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCC------ccCCccccc-------chhcCCCHHHHHH
Confidence 9999987555 444443 36778888899999999998421 1111 0000 0000126666666
Q ss_pred HHHHHHHcCCcEEEEec---cccccCCCCccHHHHHHHHhccCC
Q 026320 141 RAERCLEAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGL 181 (240)
Q Consensus 141 ~~~~dLeAGA~~ViiEa---rgi~d~~g~~r~d~v~~i~~~~~~ 181 (240)
.++ +-|.|.+=+== -|+|...-+++-|.+++|-+.++.
T Consensus 163 Fv~---~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~v 203 (286)
T PRK12738 163 FVE---LTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDV 203 (286)
T ss_pred HHH---HhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhCC
Confidence 655 34888765543 289988889999999999887653
No 312
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=72.22 E-value=62 Score=29.25 Aligned_cols=116 Identities=18% Similarity=0.200 Sum_probs=76.7
Q ss_pred ccccChhHHHHHHHHHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc----CCh-hHHHHH
Q 026320 15 HSLMPKPFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE----IPE-ETLLRY 86 (240)
Q Consensus 15 s~l~p~~~l~eKi~l~~~~gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~----l~~-~~r~~l 86 (240)
+.+.|.+.++.-++-+|++|+.++- |.| .+++-.++.+++|.+.+.+-.|.-. .+. .+.++-
T Consensus 87 ~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~----------~~~~~~~~l~~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ 156 (217)
T COG0269 87 LGAADDATIKKAIKVAKEYGKEVQIDLIGVW----------DPEQRAKWLKELGVDQVILHRGRDAQAAGKSWGEDDLEK 156 (217)
T ss_pred EecCCHHHHHHHHHHHHHcCCeEEEEeecCC----------CHHHHHHHHHHhCCCEEEEEecccHhhcCCCccHHHHHH
Confidence 3466778899999999999998874 544 2344445567799999999887542 233 355667
Q ss_pred HHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCC
Q 026320 87 VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADS 166 (240)
Q Consensus 87 I~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~ 166 (240)
|++..+.|+++--==|+ + .+.+..+...|++.||+ ||.|++..+-
T Consensus 157 ik~~~~~g~~vAVaGGI-------------------~---------------~~~i~~~~~~~~~ivIv-GraIt~a~dp 201 (217)
T COG0269 157 IKKLSDLGAKVAVAGGI-------------------T---------------PEDIPLFKGIGADIVIV-GRAITGAKDP 201 (217)
T ss_pred HHHhhccCceEEEecCC-------------------C---------------HHHHHHHhcCCCCEEEE-CchhcCCCCH
Confidence 77777766543221111 1 35667778999877766 8889888774
Q ss_pred ccHHHHHHHHh
Q 026320 167 LRADIIAKVIG 177 (240)
Q Consensus 167 ~r~d~v~~i~~ 177 (240)
....+++.+
T Consensus 202 --~~~a~~~~~ 210 (217)
T COG0269 202 --AEAARKFKE 210 (217)
T ss_pred --HHHHHHHHH
Confidence 333444443
No 313
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=72.17 E-value=24 Score=35.63 Aligned_cols=110 Identities=18% Similarity=0.161 Sum_probs=66.1
Q ss_pred HHHHHcCCCEEEecCCccc----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccC
Q 026320 59 EDCKQVGFDTIELNVGSLE----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 134 (240)
Q Consensus 59 ~~~k~lGF~~IEISdGti~----l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 134 (240)
+.-.+-|.|.+=+=|=+-. ..++...++|+++.+.=|.++ .+ +.-+-..+|+. |++.
T Consensus 274 ~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~---~v---GGGIr~~~d~~-~~~~------------ 334 (538)
T PLN02617 274 GQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPL---TV---GGGIRDFTDAN-GRYY------------ 334 (538)
T ss_pred HHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCE---EE---cCCcccccccc-cccc------------
Confidence 3335678888877665532 223344889999988533221 22 11111111210 1111
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecccc------ccCCCCccHHHHHHHHhccCCCceEEecC
Q 026320 135 VDLLIRRAERCLEAGADMIMIDSDDV------CKHADSLRADIIAKVIGRLGLEKTMFEAT 189 (240)
Q Consensus 135 ~~~~i~~~~~dLeAGA~~ViiEargi------~d~~g~~r~d~v~~i~~~~~~~~lifEAP 189 (240)
-.++.+++-|++||++|+|=+.-+ |.+.-...+++++++.+++|-.+|+.=-.
T Consensus 335 --~~~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD 393 (538)
T PLN02617 335 --SSLEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSID 393 (538)
T ss_pred --chHHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEe
Confidence 127899999999999999977433 33344556899999999888776766444
No 314
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=72.15 E-value=7.7 Score=39.31 Aligned_cols=50 Identities=20% Similarity=0.319 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCCCEEEecC----------Ccc-----cC-----ChhHHHHHHHHHHHcCCcccceeeee
Q 026320 55 KEYVEDCKQVGFDTIELNV----------GSL-----EI-----PEETLLRYVRLVKSAGLKAKPKFAVM 104 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISd----------Gti-----~l-----~~~~r~~lI~~~~~~G~~v~~E~g~k 104 (240)
++.+.++++||+++||++- |.- .+ +.++..++|+.+.++|++|+-.+-..
T Consensus 160 ~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~N 229 (613)
T TIGR01515 160 DQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPG 229 (613)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 4445888999999999943 111 11 24688899999999999999887653
No 315
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=71.96 E-value=14 Score=34.16 Aligned_cols=85 Identities=20% Similarity=0.324 Sum_probs=57.4
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCH
Q 026320 56 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 135 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~ 135 (240)
.-.+..|+-|.|+|-+.-|. +....|+.+.++|.-|.-.+|..-... ..+|.+-..- .-.++.
T Consensus 99 nA~rl~ke~GadaVKlEGg~------~~~~~i~~l~~~GIPV~gHiGLtPQ~~-------~~~GGyr~qG----k~~~~a 161 (261)
T PF02548_consen 99 NAGRLMKEAGADAVKLEGGA------EIAETIKALVDAGIPVMGHIGLTPQSV-------HQLGGYRVQG----KTAEEA 161 (261)
T ss_dssp HHHHHHHTTT-SEEEEEBSG------GGHHHHHHHHHTT--EEEEEES-GGGH-------HHHTSS--CS----TSHHHH
T ss_pred HHHHHHHhcCCCEEEeccch------hHHHHHHHHHHCCCcEEEEecCchhhe-------eccCCceEEe----cCHHHH
Confidence 33566788899999999886 457899999999999999999853321 1111111000 002357
Q ss_pred HHHHHHHHHHHHcCCcEEEEec
Q 026320 136 DLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 136 ~~~i~~~~~dLeAGA~~ViiEa 157 (240)
.++++.+++-=+|||..|.+|.
T Consensus 162 ~~l~~~A~ale~AGaf~ivlE~ 183 (261)
T PF02548_consen 162 EKLLEDAKALEEAGAFAIVLEC 183 (261)
T ss_dssp HHHHHHHHHHHHHT-SEEEEES
T ss_pred HHHHHHHHHHHHcCccEEeeec
Confidence 8999999999999999999998
No 316
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=71.95 E-value=62 Score=30.05 Aligned_cols=136 Identities=21% Similarity=0.248 Sum_probs=81.3
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHH----HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 026320 56 EYVEDCKQVGFDTIELNVGSLEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 131 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti~l~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 131 (240)
+.+..|-+.||+.|=+.--.+ |.++= .++++.|+..|.-|--|+|.--+ .+-+...+.. ....
T Consensus 88 e~i~~ai~~GftSVM~DgS~l--p~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg-~e~~~~~~~~-~~~~--------- 154 (284)
T PRK12857 88 EQVMKCIRNGFTSVMIDGSKL--PLEENIALTKKVVEIAHAVGVSVEAELGKIGG-TEDDITVDER-EAAM--------- 154 (284)
T ss_pred HHHHHHHHcCCCeEEEeCCCC--CHHHHHHHHHHHHHHHHHcCCEEEEEeeecCC-ccCCCCcccc-hhhc---------
Confidence 467778889999999975554 44443 36778888899999999998421 1111000000 0001
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEec---cccccCCCCccHHHHHHHHhccCCCceEEecC-Cc-hhHHHHHHHhCCCcc
Q 026320 132 VEDVDLLIRRAERCLEAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGLEKTMFEAT-NP-RTSEWFIRRYGPKVN 206 (240)
Q Consensus 132 ~~~~~~~i~~~~~dLeAGA~~ViiEa---rgi~d~~g~~r~d~v~~i~~~~~~~~lifEAP-~k-~qQ~~~I~~fG~~VN 206 (240)
.||++..+.++ +-|+|.+-|== -|+|...-+++-+.+++|-+.++.-=++==+. .+ +|....|+.==..||
T Consensus 155 -T~pe~a~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiN 230 (284)
T PRK12857 155 -TDPEEARRFVE---ETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAIRKAISLGVRKVN 230 (284)
T ss_pred -CCHHHHHHHHH---HHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEE
Confidence 26666666554 34888766543 28998878999999999987765321222111 22 334444444345566
Q ss_pred cc
Q 026320 207 LF 208 (240)
Q Consensus 207 Lg 208 (240)
++
T Consensus 231 i~ 232 (284)
T PRK12857 231 ID 232 (284)
T ss_pred eC
Confidence 65
No 317
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=71.94 E-value=12 Score=33.76 Aligned_cols=71 Identities=18% Similarity=0.239 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 133 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 133 (240)
++.-+..++++|-+.|-.=.=--.=..++...+-+.+.++||..-|-=|+
T Consensus 137 vetAiaml~dmG~~SiKffPm~Gl~~leE~~avAkA~a~~g~~lEPTGGI------------------------------ 186 (218)
T PF07071_consen 137 VETAIAMLKDMGGSSIKFFPMGGLKHLEELKAVAKACARNGFTLEPTGGI------------------------------ 186 (218)
T ss_dssp HHHHHHHHHHTT--EEEE---TTTTTHHHHHHHHHHHHHCT-EEEEBSS-------------------------------
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceeCCcCCc------------------------------
Confidence 66677777777777665422111122445555566666666665332222
Q ss_pred CHHHHHHHHHHHHHcCCcEEE
Q 026320 134 DVDLLIRRAERCLEAGADMIM 154 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~Vi 154 (240)
|++.+-+-.+-+|+||+.+||
T Consensus 187 dl~N~~~I~~i~l~aGv~~vi 207 (218)
T PF07071_consen 187 DLDNFEEIVKICLDAGVEKVI 207 (218)
T ss_dssp -TTTHHHHHHHHHHTT-S-B-
T ss_pred CHHHHHHHHHHHHHcCCCeec
Confidence 223344555667788887776
No 318
>PRK15108 biotin synthase; Provisional
Probab=71.83 E-value=84 Score=29.60 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHhCCceecC--CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHHHH
Q 026320 21 PFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYVRL 89 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~v~~--Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti---------~l~~~~r~~lI~~ 89 (240)
+.+.+.++.+|+.++.++. |. .-++.++..|+.|.|.+=+|=-|. .=+-++|++.|+.
T Consensus 111 e~i~~~i~~ik~~~i~v~~s~G~-----------ls~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~ 179 (345)
T PRK15108 111 PYLEQMVQGVKAMGLETCMTLGT-----------LSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEK 179 (345)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCc-----------CCHHHHHHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHH
Confidence 5688889999998886652 42 226777888999999776643221 2367899999999
Q ss_pred HHHcCCcccc
Q 026320 90 VKSAGLKAKP 99 (240)
Q Consensus 90 ~~~~G~~v~~ 99 (240)
+++.|+++.+
T Consensus 180 a~~~G~~v~s 189 (345)
T PRK15108 180 VRDAGIKVCS 189 (345)
T ss_pred HHHcCCceee
Confidence 9999997755
No 319
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=71.79 E-value=58 Score=30.20 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=6.6
Q ss_pred ccChhHHHHHHHH
Q 026320 17 LMPKPFIEEVVKR 29 (240)
Q Consensus 17 l~p~~~l~eKi~l 29 (240)
.|+.+.+++.++.
T Consensus 38 ~m~~~~~~~~i~~ 50 (370)
T PRK13758 38 IMRDEVLESMVKR 50 (370)
T ss_pred CCCHHHHHHHHHH
Confidence 4555555555543
No 320
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=71.75 E-value=12 Score=32.02 Aligned_cols=65 Identities=18% Similarity=0.257 Sum_probs=49.6
Q ss_pred HHHHHHhCCc-eec-CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcc
Q 026320 26 VVKRAHQHDV-YVS-TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 97 (240)
Q Consensus 26 Ki~l~~~~gV-~v~-~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v 97 (240)
..++++++|| .+. .|--.++|+..- ...+.++||+.+=++|++-+.+.+.....++.++..|.++
T Consensus 129 L~~~L~~~~i~~lii~G~~t~~CV~~T-------~~~a~~~g~~v~v~~Da~~~~~~~~~~~al~~~~~~G~~i 195 (196)
T cd01011 129 LAEYLRERGIDRVDVVGLATDYCVKAT-------ALDALKAGFEVRVLEDACRAVDPETIERAIEEMKEAGVVL 195 (196)
T ss_pred HHHHHHHCCCCEEEEEEecccHHHHHH-------HHHHHHCCCEEEEeccccCCCCHHHHHHHHHHHHHccCEE
Confidence 3455677788 444 476777777663 4445667999999999999999999999999998877654
No 321
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=71.48 E-value=13 Score=32.97 Aligned_cols=71 Identities=17% Similarity=0.298 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHhCCceecC--CcH----HHHHHHhCCc----hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHH
Q 026320 21 PFIEEVVKRAHQHDVYVST--GDW----AEHLIRNGPS----AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLV 90 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~v~~--Gtl----~E~a~~qg~~----~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~ 90 (240)
..+...++.+|++|+++.+ |+| +..++ .++. -++..++.+++.|||.|.|.=-....+.+....+++.+
T Consensus 46 ~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~~~-~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~~~~~~~fv~~L 124 (253)
T cd06545 46 SELNSVVNAAHAHNVKILISLAGGSPPEFTAAL-NDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVTFGDYLVFIRAL 124 (253)
T ss_pred HHHHHHHHHHHhCCCEEEEEEcCCCCCcchhhh-cCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCccHhHHHHHHHHH
Confidence 4578889999999998885 543 22222 2211 35788889999999999997544443355666777777
Q ss_pred HH
Q 026320 91 KS 92 (240)
Q Consensus 91 ~~ 92 (240)
++
T Consensus 125 r~ 126 (253)
T cd06545 125 YA 126 (253)
T ss_pred HH
Confidence 76
No 322
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=71.36 E-value=11 Score=39.06 Aligned_cols=61 Identities=23% Similarity=0.224 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHhCCceec--CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCc
Q 026320 20 KPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 96 (240)
Q Consensus 20 ~~~l~eKi~l~~~~gV~v~--~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~ 96 (240)
++..++-++.+|+.||.+. +|.--+.|-. -++++|++.+ .-...+++|.++|+..++.|-.
T Consensus 447 R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~a-----------IA~elGId~v-----~A~~~PedK~~iV~~lQ~~G~~ 509 (679)
T PRK01122 447 KPGIKERFAELRKMGIKTVMITGDNPLTAAA-----------IAAEAGVDDF-----LAEATPEDKLALIRQEQAEGRL 509 (679)
T ss_pred chhHHHHHHHHHHCCCeEEEECCCCHHHHHH-----------HHHHcCCcEE-----EccCCHHHHHHHHHHHHHcCCe
Confidence 4567778888888887444 5754333322 2366777543 4578999999999999998754
No 323
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=71.32 E-value=8.5 Score=36.85 Aligned_cols=121 Identities=21% Similarity=0.310 Sum_probs=66.5
Q ss_pred HHHHHHHHHhCCceecC--CcHH--H------------------HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC-
Q 026320 23 IEEVVKRAHQHDVYVST--GDWA--E------------------HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP- 79 (240)
Q Consensus 23 l~eKi~l~~~~gV~v~~--Gtl~--E------------------~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~- 79 (240)
-|+-+++||.+||.|-. |..- | -+... ..++-.+.+++-|.|++=||-||.-=.
T Consensus 125 Trevve~Ah~~GvsVEaELG~igg~e~~~~g~ed~~~~~~~~~~~~~~T---~PeeA~~Fv~~TgvD~LAvaiGt~HG~Y 201 (347)
T PRK13399 125 TRRVTEMAHAVGVSVEGELGCLGSLETGEAGEEDGVGAEGKLSHDQMLT---DPDQAVDFVQRTGVDALAIAIGTSHGAY 201 (347)
T ss_pred HHHHHHHHHHcCCeEEEEeeeccCcccccccccCCccccccccccccCC---CHHHHHHHHHHHCcCEEhhhhccccCCc
Confidence 47889999999997763 5321 1 11122 356666667778999999999998221
Q ss_pred -----hh---HHHHHHHHHHHcCCcccceeeeecCCCCCCCcc---ccccccccccCCCCcccccCHHHHHHHHHHHHHc
Q 026320 80 -----EE---TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDR---DRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA 148 (240)
Q Consensus 80 -----~~---~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~---d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeA 148 (240)
+. -...+++..++. +.-.| =|.++.|.+|..- -.++|..+.- ..|+. .++++++++.
T Consensus 202 k~~~~p~~~~L~~drl~eI~~~-v~~vP--LVLHGgSGvp~~~~~~~~~~g~~~~~----~~g~~-----~e~~~kai~~ 269 (347)
T PRK13399 202 KFTRKPDGDILAIDRIEEIHAR-LPNTH--LVMHGSSSVPQELQEIINAYGGKMKE----TYGVP-----VEEIQRGIKH 269 (347)
T ss_pred CCCCCCChhhccHHHHHHHHhh-cCCCC--EEEeCCCCCCHHHHHHHHHhcCCccc----cCCCC-----HHHHHHHHHC
Confidence 11 333455555552 10122 2566666553100 0000000000 00000 4788999999
Q ss_pred CCcEEEEecc
Q 026320 149 GADMIMIDSD 158 (240)
Q Consensus 149 GA~~ViiEar 158 (240)
|..+|=|-.+
T Consensus 270 GI~KINi~Td 279 (347)
T PRK13399 270 GVRKVNIDTD 279 (347)
T ss_pred CCeEEEeChH
Confidence 9999977664
No 324
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=71.22 E-value=9.4 Score=36.62 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHH----HHHHHHHHHcCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETL----LRYVRLVKSAGLKAKP 99 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r----~~lI~~~~~~G~~v~~ 99 (240)
...+.++.++++||+.||+.+.- ...+..+| .++-+.+++.||++..
T Consensus 33 ~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~ 86 (382)
T TIGR02631 33 DPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPM 86 (382)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEE
Confidence 67889999999999999998764 23443332 4566678888998543
No 325
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=71.20 E-value=9.7 Score=33.22 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=51.6
Q ss_pred HHHHhCCc-eecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccc
Q 026320 28 KRAHQHDV-YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 98 (240)
Q Consensus 28 ~l~~~~gV-~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~ 98 (240)
++++++|| .++- |-..++|+.+- ...+.++||+.+=++|++-..+.+.....++.++..|-++.
T Consensus 139 ~~L~~~gi~~lvi~G~~t~~CV~~T-------a~~a~~~g~~v~vv~Da~~~~~~~~~~~al~~~~~~g~~v~ 204 (212)
T PTZ00331 139 QILKAHGVRRVFICGLAFDFCVLFT-------ALDAVKLGFKVVVLEDATRAVDPDAISKQRAELLEAGVILL 204 (212)
T ss_pred HHHHHCCCCEEEEEEeccCHHHHHH-------HHHHHHCCCEEEEeCcCccCCCHHHHHHHHHHHHHCCCEEE
Confidence 45678888 5554 76788888774 24567899999999999999999999999999998876543
No 326
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=71.20 E-value=5 Score=35.23 Aligned_cols=111 Identities=21% Similarity=0.171 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHhCCceecC-CcHHHHHHHh--CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcc
Q 026320 21 PFIEEVVKRAHQHDVYVST-GDWAEHLIRN--GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 97 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~v~~-Gtl~E~a~~q--g~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v 97 (240)
+.+++-++.||++|+++-. +-+-.-.+.. .++.+....+.|.++|-|.|-.|.|.-.=...+-.++++++.+. ..+
T Consensus 112 ~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~-~~~ 190 (236)
T PF01791_consen 112 EEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKPVGATPEDVELMRKAVEA-APV 190 (236)
T ss_dssp HHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHT-HSS
T ss_pred HHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHHh-cCC
Confidence 4688889999999997653 2111111000 11246777888899999999999994433333445566666551 111
Q ss_pred cceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEE
Q 026320 98 KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 153 (240)
Q Consensus 98 ~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~V 153 (240)
--.+++|..+. ++. ++...-++++...+++||+.+
T Consensus 191 p~~~~Vk~sGG---i~~------------------~~~~~~l~~a~~~i~aGa~~~ 225 (236)
T PF01791_consen 191 PGKVGVKASGG---IDA------------------EDFLRTLEDALEFIEAGADRI 225 (236)
T ss_dssp TTTSEEEEESS---SSH------------------HHHHHSHHHHHHHHHTTHSEE
T ss_pred CcceEEEEeCC---CCh------------------HHHHHHHHHHHHHHHcCChhH
Confidence 12466775321 100 123455888888899999763
No 327
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=71.18 E-value=31 Score=32.29 Aligned_cols=70 Identities=21% Similarity=0.332 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
...+.++.+-+.|.+.|+|+-..- +.+...++|+.+++.+ |++-+-. ..+ .
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~~~G--~~~~~~~~i~~ik~~~----p~v~Vi~--G~v-----------~---------- 144 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDSAHG--HSVYVIEMIKFIKKKY----PNVDVIA--GNV-----------V---------- 144 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEECCCC--CcHHHHHHHHHHHHHC----CCceEEE--CCC-----------C----------
Confidence 456778888889999999865332 1245678899888864 2222211 111 1
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEe
Q 026320 133 EDVDLLIRRAERCLEAGADMIMID 156 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiE 156 (240)
+ .+.++..+++|||.|++-
T Consensus 145 -t----~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 145 -T----AEAARDLIDAGADGVKVG 163 (325)
T ss_pred -C----HHHHHHHHhcCCCEEEEC
Confidence 1 567788889999999984
No 328
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=71.07 E-value=21 Score=35.31 Aligned_cols=93 Identities=16% Similarity=0.193 Sum_probs=67.4
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHH
Q 026320 58 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 137 (240)
Q Consensus 58 l~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 137 (240)
+.+++.+|=|+|=+--..+ +.++..++++.+++.||.++-|++-
T Consensus 125 I~ea~~~GADavLLI~~~L--~~~~l~~l~~~a~~lGl~~lvEvh~---------------------------------- 168 (454)
T PRK09427 125 IYLARYYGADAILLMLSVL--DDEQYRQLAAVAHSLNMGVLTEVSN---------------------------------- 168 (454)
T ss_pred HHHHHHcCCCchhHHHHhC--CHHHHHHHHHHHHHcCCcEEEEECC----------------------------------
Confidence 6788999999987766654 4678889999999999999999876
Q ss_pred HHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCce-EEecC
Q 026320 138 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEAT 189 (240)
Q Consensus 138 ~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~l-ifEAP 189 (240)
.+++++.+++||..|-|=.|.+-.- ++..+.-.+++..+|.+.+ +-|.=
T Consensus 169 -~~El~~al~~~a~iiGiNnRdL~t~--~vd~~~~~~l~~~ip~~~~~vseSG 218 (454)
T PRK09427 169 -EEELERAIALGAKVIGINNRNLRDL--SIDLNRTRELAPLIPADVIVISESG 218 (454)
T ss_pred -HHHHHHHHhCCCCEEEEeCCCCccc--eECHHHHHHHHhhCCCCcEEEEeCC
Confidence 3456667899999999999865322 2334555566666664444 44443
No 329
>PRK09234 fbiC FO synthase; Reviewed
Probab=71.04 E-value=57 Score=34.79 Aligned_cols=73 Identities=15% Similarity=0.322 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHcCCCEE-----EecCCc-------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 026320 53 AFKEYVEDCKQVGFDTI-----ELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 120 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~I-----EISdGt-------i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~ 120 (240)
..++|++.+|+.|.+.+ ||-+-- -.++.++|.+.|+.+++.|+++-+ |..++..
T Consensus 626 ~~~e~l~~LkeAGLds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~lGi~~~s--tmm~G~~------------ 691 (843)
T PRK09234 626 SIREWLTALREAGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEVGLRSSS--TMMYGHV------------ 691 (843)
T ss_pred CHHHHHHHHHHhCcCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCccc--ceEEcCC------------
Confidence 46899999999999988 233220 145788999999999999998777 4444321
Q ss_pred ccccCCCCcccccCHHHHHHHHHHHHHcCCc
Q 026320 121 YVARAPRSTEYVEDVDLLIRRAERCLEAGAD 151 (240)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~ 151 (240)
++++++++.+..--+.+.+
T Consensus 692 ------------Et~edrv~hl~~LreLq~~ 710 (843)
T PRK09234 692 ------------DTPRHWVAHLRVLRDIQDR 710 (843)
T ss_pred ------------CCHHHHHHHHHHHHhcCcc
Confidence 2467888887776666653
No 330
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=71.03 E-value=11 Score=35.65 Aligned_cols=47 Identities=28% Similarity=0.391 Sum_probs=35.1
Q ss_pred HHHHHHHHhCCceecC-CcH-HHHHHHhCCc----hHHHHHHHHHHcCCCEEEec
Q 026320 24 EEVVKRAHQHDVYVST-GDW-AEHLIRNGPS----AFKEYVEDCKQVGFDTIELN 72 (240)
Q Consensus 24 ~eKi~l~~~~gV~v~~-Gtl-~E~a~~qg~~----~~~~yl~~~k~lGF~~IEIS 72 (240)
.+-+..||++||+|.+ |++ ++.+ .++. -++..++.+++.|||.|.|.
T Consensus 67 ~~~~~~A~~~~v~v~~~~~~~~~~l--~~~~~R~~fi~siv~~~~~~gfDGIdID 119 (358)
T cd02875 67 DELLCYAHSKGVRLVLKGDVPLEQI--SNPTYRTQWIQQKVELAKSQFMDGINID 119 (358)
T ss_pred HHHHHHHHHcCCEEEEECccCHHHc--CCHHHHHHHHHHHHHHHHHhCCCeEEEc
Confidence 5777899999999987 553 4431 1211 36888999999999999885
No 331
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=71.01 E-value=24 Score=31.26 Aligned_cols=129 Identities=18% Similarity=0.197 Sum_probs=74.2
Q ss_pred EecCccccccChhHHHHHHHHHHhCCce---------------ecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe--
Q 026320 9 KFSGGSHSLMPKPFIEEVVKRAHQHDVY---------------VSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL-- 71 (240)
Q Consensus 9 Kfg~GTs~l~p~~~l~eKi~l~~~~gV~---------------v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEI-- 71 (240)
++-.||+.+-+++.+++-.+.+.+-.|. |++-+|.+. ......++.+.+.++|++.|=+
T Consensus 99 ~Viigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~g~~~ii~~~ 174 (253)
T PRK02083 99 KVSINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKP----TGLDAVEWAKEVEELGAGEILLTS 174 (253)
T ss_pred EEEEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCcee----cCCCHHHHHHHHHHcCCCEEEEcC
Confidence 4567888888888887765554211122 222234431 1226778889999999999888
Q ss_pred --cCCcccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHH-
Q 026320 72 --NVGSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLE- 147 (240)
Q Consensus 72 --SdGti~l~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLe- 147 (240)
.+|+..-++ ..+++.+++. ...++..-|+ .|++++.+ .++
T Consensus 175 i~~~g~~~g~d---~~~i~~~~~~~~ipvia~GGv-----------------------------~s~~d~~~----~~~~ 218 (253)
T PRK02083 175 MDRDGTKNGYD---LELTRAVSDAVNVPVIASGGA-----------------------------GNLEHFVE----AFTE 218 (253)
T ss_pred CcCCCCCCCcC---HHHHHHHHhhCCCCEEEECCC-----------------------------CCHHHHHH----HHHh
Confidence 457777664 4566666653 2333332222 24444444 344
Q ss_pred cCCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 026320 148 AGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 148 AGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~ 180 (240)
.||+-||+=. .-..|.+.-..+.+.+.+-|
T Consensus 219 ~G~~gvivg~---al~~~~~~~~~~~~~~~~~~ 248 (253)
T PRK02083 219 GGADAALAAS---IFHFGEITIGELKAYLAEQG 248 (253)
T ss_pred CCccEEeEhH---HHHcCCCCHHHHHHHHHHCC
Confidence 6999999832 22224455555555554444
No 332
>PLN02389 biotin synthase
Probab=70.97 E-value=56 Score=31.41 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHHHHHHHcCCcccceeeeecC
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYVRLVKSAGLKAKPKFAVMFN 106 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti---------~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~ 106 (240)
-++-++..|+.|++.+-++--|. .-+-++|++.|+.+++.|+++-+ |.-.+
T Consensus 177 ~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~s--g~IiG 236 (379)
T PLN02389 177 EKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCS--GGIIG 236 (379)
T ss_pred CHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeE--EEEEC
Confidence 35667777788888776654321 24567888888888888887644 44433
No 333
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=70.93 E-value=70 Score=30.19 Aligned_cols=180 Identities=11% Similarity=0.161 Sum_probs=106.2
Q ss_pred EecCccccccChhHHHHHHHHHHhCCceec----CCc--HH--H---HH---HHhCCc-----------hHHHHHHHHHH
Q 026320 9 KFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGD--WA--E---HL---IRNGPS-----------AFKEYVEDCKQ 63 (240)
Q Consensus 9 Kfg~GTs~l~p~~~l~eKi~l~~~~gV~v~----~Gt--l~--E---~a---~~qg~~-----------~~~~yl~~~k~ 63 (240)
+++-|.+-+++-+.++.-++-+.+.+.++. +|+ +. + .+ +.+..+ .=-+.+..|-+
T Consensus 16 ~yaV~AfN~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~ 95 (307)
T PRK05835 16 GYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVK 95 (307)
T ss_pred CceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHH
Confidence 356677778888888888888888877553 222 10 1 11 112111 12456778889
Q ss_pred cCCCEEEecCCcccCChhHH----HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHH
Q 026320 64 VGFDTIELNVGSLEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 139 (240)
Q Consensus 64 lGF~~IEISdGti~l~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i 139 (240)
.||+-|=+.--. +|.++= +++++.|+..|.-|--|+|.--+ .+-+...+.. ....| ||++..
T Consensus 96 ~GftSVM~DgS~--l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg-~ed~~~~~~~-~~~~T----------dPeeA~ 161 (307)
T PRK05835 96 AGFTSVMIDASH--HAFEENLELTSKVVKMAHNAGVSVEAELGRLMG-IEDNISVDEK-DAVLV----------NPKEAE 161 (307)
T ss_pred cCCCEEEEeCCC--CCHHHHHHHHHHHHHHHHHcCCEEEEEecccCC-ccCCcccccc-cccCC----------CHHHHH
Confidence 999999886544 444443 36778888999999999998432 1111000000 01122 566665
Q ss_pred HHHHHHHHcCCcEEEEec---ccccc--CCCCccHHHHHHHHhccCCCceEEecC-CchhHHHHHHHhCCCc
Q 026320 140 RRAERCLEAGADMIMIDS---DDVCK--HADSLRADIIAKVIGRLGLEKTMFEAT-NPRTSEWFIRRYGPKV 205 (240)
Q Consensus 140 ~~~~~dLeAGA~~ViiEa---rgi~d--~~g~~r~d~v~~i~~~~~~~~lifEAP-~k~qQ~~~I~~fG~~V 205 (240)
+.++ +-|+|..=+== -|.|. ..-+++-|.+++|-+.++.--++==+. .|+.+..-++.||-++
T Consensus 162 ~Fv~---~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~iPLVLHGgSGip~e~~~~~~~~g~~~ 230 (307)
T PRK05835 162 QFVK---ESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRKSYLDAGGDL 230 (307)
T ss_pred HHHH---hhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCchHHhhhhhhhcccc
Confidence 5555 45888754432 28998 445799999999988776433443333 3444444555555443
No 334
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=69.85 E-value=5.7 Score=36.32 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc--cCChhHHHH-HHHHHHHcCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSL--EIPEETLLR-YVRLVKSAGLKAKP 99 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti--~l~~~~r~~-lI~~~~~~G~~v~~ 99 (240)
.+++|+..||++||+.|||-|.-- +|....-.. +-..+.+.|+...+
T Consensus 18 ~v~affa~ak~lg~s~VeiRndl~~~~I~dg~p~a~vka~Aek~Gl~IvS 67 (272)
T COG4130 18 SVEAFFALAKRLGLSKVEIRNDLPSNAIADGTPAAEVKALAEKAGLTIVS 67 (272)
T ss_pred CHHHHHHHHHHcCcceeEEecCCCcccccCCCCHHHHHHHHHHcCcEEEE
Confidence 699999999999999999977543 333333222 33445566776544
No 335
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=69.75 E-value=85 Score=29.19 Aligned_cols=156 Identities=11% Similarity=0.148 Sum_probs=79.1
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCC-ce-ecCCc-HHHHHHHhCCc-hHHHHHHHHHHcCCCEEEecCCcc---c
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-VY-VSTGD-WAEHLIRNGPS-AFKEYVEDCKQVGFDTIELNVGSL---E 77 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~g-V~-v~~Gt-l~E~a~~qg~~-~~~~yl~~~k~lGF~~IEISdGti---~ 77 (240)
|.-+-|++|--.+.+.+.|.+-++.+++.+ |. +--|| .. ..+|. --++.++.+++.|.. +-||--+. .
T Consensus 137 I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~----v~~p~rit~ell~~L~~~g~~-v~i~l~~~h~~e 211 (321)
T TIGR03822 137 IWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVP----VADPARVTPALIAALKTSGKT-VYVALHANHARE 211 (321)
T ss_pred ccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCc----ccChhhcCHHHHHHHHHcCCc-EEEEecCCChhh
Confidence 334556777776666666777777666655 21 11232 11 00111 134666666777744 34543332 2
Q ss_pred CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 78 IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 78 l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
+. ++-.+.|++++++|+.+.....+-.+ + . ++.+.+.+..+..++.|+...-+.-
T Consensus 212 l~-~~~~~ai~~L~~~Gi~v~~q~vLl~g---v--N-------------------d~~~~l~~l~~~l~~~gv~pyyl~~ 266 (321)
T TIGR03822 212 LT-AEARAACARLIDAGIPMVSQSVLLRG---V--N-------------------DDPETLAALMRAFVECRIKPYYLHH 266 (321)
T ss_pred cC-HHHHHHHHHHHHcCCEEEEEeeEeCC---C--C-------------------CCHHHHHHHHHHHHhcCCeeEEEEe
Confidence 22 44457777788877765554444111 1 0 2456777777777888887443332
Q ss_pred ----cc--cccCCCCccHHHHHHHHhccC---CCceEEecCC
Q 026320 158 ----DD--VCKHADSLRADIIAKVIGRLG---LEKTMFEATN 190 (240)
Q Consensus 158 ----rg--i~d~~g~~r~d~v~~i~~~~~---~~~lifEAP~ 190 (240)
.| .|+-.-.--.++++++.+.++ .-+++-|.|.
T Consensus 267 ~~p~~g~~~f~~~~~~~~~i~~~l~~~~~g~~~p~~v~~~~~ 308 (321)
T TIGR03822 267 LDLAPGTAHFRVTIEEGQALVRALRGRISGLAQPTYVLDIPG 308 (321)
T ss_pred cCCCCCcccccCcHHHHHHHHHHHHHhCCCCcceeEEEeCCC
Confidence 12 222111111334444444444 5677777774
No 336
>PRK12313 glycogen branching enzyme; Provisional
Probab=69.70 E-value=10 Score=38.50 Aligned_cols=51 Identities=16% Similarity=0.273 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCCCEEEecC----------Cc-----ccC-----ChhHHHHHHHHHHHcCCcccceeeee
Q 026320 54 FKEYVEDCKQVGFDTIELNV----------GS-----LEI-----PEETLLRYVRLVKSAGLKAKPKFAVM 104 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISd----------Gt-----i~l-----~~~~r~~lI~~~~~~G~~v~~E~g~k 104 (240)
.++.++++++||+++|+++= |. ..+ +.++..++|+.++++|++|+-.+-..
T Consensus 173 ~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~n 243 (633)
T PRK12313 173 ADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVPG 243 (633)
T ss_pred HHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 45567899999999999753 11 111 25688999999999999999886653
No 337
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=69.68 E-value=11 Score=37.13 Aligned_cols=76 Identities=20% Similarity=0.323 Sum_probs=51.3
Q ss_pred cChhHHHHHHHHHHhCCceecC--C---c--HHHHHHH----hC------------C-chHHHHH---HHHHHcCCCEEE
Q 026320 18 MPKPFIEEVVKRAHQHDVYVST--G---D--WAEHLIR----NG------------P-SAFKEYV---EDCKQVGFDTIE 70 (240)
Q Consensus 18 ~p~~~l~eKi~l~~~~gV~v~~--G---t--l~E~a~~----qg------------~-~~~~~yl---~~~k~lGF~~IE 70 (240)
|+-+.++.-++.+.+|||.|+- . . =++.++. .| | ..++.|+ ++..++|+|.|=
T Consensus 95 yaDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIc 174 (472)
T COG5016 95 YADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSIC 174 (472)
T ss_pred CchHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEE
Confidence 4556777777777777775541 1 1 1333321 11 1 2345555 455568999999
Q ss_pred ecCCcccCChhHHHHHHHHHHHc
Q 026320 71 LNVGSLEIPEETLLRYVRLVKSA 93 (240)
Q Consensus 71 ISdGti~l~~~~r~~lI~~~~~~ 93 (240)
|-|=+--+++..--++|+.+|+.
T Consensus 175 iKDmaGlltP~~ayelVk~iK~~ 197 (472)
T COG5016 175 IKDMAGLLTPYEAYELVKAIKKE 197 (472)
T ss_pred eecccccCChHHHHHHHHHHHHh
Confidence 99999999999999999999993
No 338
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=69.54 E-value=11 Score=35.42 Aligned_cols=65 Identities=18% Similarity=0.153 Sum_probs=37.5
Q ss_pred CccccccChhHHHHHHHHHHhC-CceecCC---cHHHHHHHhCC--chHHHHHHHHHHcC-CCEEEecCCccc
Q 026320 12 GGSHSLMPKPFIEEVVKRAHQH-DVYVSTG---DWAEHLIRNGP--SAFKEYVEDCKQVG-FDTIELNVGSLE 77 (240)
Q Consensus 12 ~GTs~l~p~~~l~eKi~l~~~~-gV~v~~G---tl~E~a~~qg~--~~~~~yl~~~k~lG-F~~IEISdGti~ 77 (240)
+|-+..-+...+.+-++-.|+. |..+.-| ++.|.. ..|. +..-++.+.+.+.| .|.|+||.|+..
T Consensus 183 yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~-~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~ 254 (343)
T cd04734 183 YGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDT-EGGLSPDEALEIAARLAAEGLIDYVNVSAGSYY 254 (343)
T ss_pred CCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhcc-CCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCC
Confidence 4445555557888888888875 4322222 122321 1111 12335556666778 999999998764
No 339
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=69.46 E-value=29 Score=33.10 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=18.3
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEE
Q 026320 133 EDVDLLIRRAERCLEAGADMIMI 155 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~Vii 155 (240)
.|+++.++.++...++|+|+|=+
T Consensus 232 ~~~~e~~~~~~~l~~~gvd~i~v 254 (361)
T cd04747 232 DTPDELEALLAPLVDAGVDIFHC 254 (361)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEe
Confidence 36788888888888999999543
No 340
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=69.45 E-value=13 Score=38.48 Aligned_cols=63 Identities=19% Similarity=0.157 Sum_probs=44.9
Q ss_pred ChhHHHHHHHHHHhCCceec--CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCc
Q 026320 19 PKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 96 (240)
Q Consensus 19 p~~~l~eKi~l~~~~gV~v~--~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~ 96 (240)
+++..++-|+.+|+.||.+. +|.=-+.|.+ -|+++|++.+ +-...+++|.++|+..++.|-.
T Consensus 442 ~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~a-----------IA~elGI~~v-----~A~~~PedK~~iV~~lQ~~G~~ 505 (673)
T PRK14010 442 IKDGLVERFRELREMGIETVMCTGDNELTAAT-----------IAKEAGVDRF-----VAECKPEDKINVIREEQAKGHI 505 (673)
T ss_pred CcHHHHHHHHHHHHCCCeEEEECCCCHHHHHH-----------HHHHcCCceE-----EcCCCHHHHHHHHHHHHhCCCE
Confidence 45568888888888888544 6754333332 2477887632 4678999999999999998854
Q ss_pred c
Q 026320 97 A 97 (240)
Q Consensus 97 v 97 (240)
|
T Consensus 506 V 506 (673)
T PRK14010 506 V 506 (673)
T ss_pred E
Confidence 3
No 341
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=69.19 E-value=41 Score=31.48 Aligned_cols=81 Identities=14% Similarity=0.093 Sum_probs=56.5
Q ss_pred EEecCccccccChhHHHHHHHHHHhC-CceecC--C-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc------
Q 026320 8 LKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVST--G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE------ 77 (240)
Q Consensus 8 lKfg~GTs~l~p~~~l~eKi~l~~~~-gV~v~~--G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~------ 77 (240)
.|=|+|++.+..++.+.+.++-.+++ +++|+- - +|-... .. ...-++.+.+.+.|.++|.|.-.|..
T Consensus 96 ~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~-~~--~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg 172 (318)
T TIGR00742 96 QNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLD-SY--EFLCDFVEIVSGKGCQNFIVHARKAWLSGLSP 172 (318)
T ss_pred CCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcc-hH--HHHHHHHHHHHHcCCCEEEEeCCchhhcCCCc
Confidence 46688999999999999999999875 665552 1 231110 11 14567888999999999999999841
Q ss_pred -----CChhHHHHHHHHHHH
Q 026320 78 -----IPEETLLRYVRLVKS 92 (240)
Q Consensus 78 -----l~~~~r~~lI~~~~~ 92 (240)
++.-+ .+.|+++++
T Consensus 173 ~~~~~~~~~~-~~~i~~vk~ 191 (318)
T TIGR00742 173 KENREIPPLR-YERVYQLKK 191 (318)
T ss_pred cccccCCchh-HHHHHHHHH
Confidence 23223 367887777
No 342
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=69.18 E-value=96 Score=28.65 Aligned_cols=142 Identities=15% Similarity=0.076 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecC-CCCCCCccccccccccccCCCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFN-KSDIPSDRDRAFGAYVARAPRS 128 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~-~~evg~~~d~~~~~~~~~~~~~ 128 (240)
.+.+.++++-+-|.+.|=+.-.| ..++.++|.++++.+++. .+.+-| ..-+|
T Consensus 26 a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~-------~~grvpviaG~g----------------- 81 (299)
T COG0329 26 ALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEA-------VGGRVPVIAGVG----------------- 81 (299)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHH-------HCCCCcEEEecC-----------------
Confidence 57788888899999998775444 389999999999999984 332211 10111
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCch---hHHHHHHHhCCCc
Q 026320 129 TEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPR---TSEWFIRRYGPKV 205 (240)
Q Consensus 129 ~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifEAP~k~---qQ~~~I~~fG~~V 205 (240)
..+.++-++.++..-++|||-|++=.-=.+....+---+-...|++..++.-++.--|... --...+.++-..=
T Consensus 82 ---~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~~~ 158 (299)
T COG0329 82 ---SNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAEHP 158 (299)
T ss_pred ---CCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhcCC
Confidence 1246888999999999999999997753333333333344455666666556666666332 2234444444433
Q ss_pred cc-c--cCCCCchhhhhhh
Q 026320 206 NL-F--VDHSQVMDLECLR 221 (240)
Q Consensus 206 NL-g--I~~~dVl~LE~LR 221 (240)
|+ | -+-.|+-.++.+|
T Consensus 159 nivgiKd~~gd~~~~~~~~ 177 (299)
T COG0329 159 NIVGVKDSSGDLDRLEEII 177 (299)
T ss_pred CEEEEEeCCcCHHHHHHHH
Confidence 44 3 3333555555443
No 343
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=69.08 E-value=36 Score=30.70 Aligned_cols=139 Identities=14% Similarity=0.108 Sum_probs=84.4
Q ss_pred HHHcCCCEEEecCCc----------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcc
Q 026320 61 CKQVGFDTIELNVGS----------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 130 (240)
Q Consensus 61 ~k~lGF~~IEISdGt----------i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~ 130 (240)
+.+.||++|=+|+.. ..++.++....++.+.+. ..-.| +-. ..+.|..
T Consensus 28 ~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~-~~~~p-via---D~~~G~g----------------- 85 (240)
T cd06556 28 FADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRG-APLAL-IVA---DLPFGAY----------------- 85 (240)
T ss_pred HHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhh-CCCCC-EEE---eCCCCCC-----------------
Confidence 345588888888743 367888888888888762 11011 111 1122211
Q ss_pred cccCHHHHHHHHHHHHHcCCcEEEEecc-------------cc-----ccC-------------CCCcc---HHHHHHH-
Q 026320 131 YVEDVDLLIRRAERCLEAGADMIMIDSD-------------DV-----CKH-------------ADSLR---ADIIAKV- 175 (240)
Q Consensus 131 ~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------gi-----~d~-------------~g~~r---~d~v~~i- 175 (240)
.++++.++.+++.+++||+-|-||.- ++ +|. .|+-. ++.+++-
T Consensus 86 --~~~~~~~~~~~~l~~aGa~gv~iED~~~~~~~i~ai~~a~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ 163 (240)
T cd06556 86 --GAPTAAFELAKTFMRAGAAGVKIEGGEWHIETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADAL 163 (240)
T ss_pred --cCHHHHHHHHHHHHHcCCcEEEEcCcHHHHHHHHHHHHcCCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHH
Confidence 14688899999999999999999982 11 121 22211 2333222
Q ss_pred -HhccCCCceEEecCCchhHHHHHHHhCCCcccc-cC---CCCchhhhhhhCc
Q 026320 176 -IGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLF-VD---HSQVMDLECLRGR 223 (240)
Q Consensus 176 -~~~~~~~~lifEAP~k~qQ~~~I~~fG~~VNLg-I~---~~dVl~LE~LR~~ 223 (240)
....|.+-+..|++..++-..+-+...-=||.. -+ -.||+-+.-+.+=
T Consensus 164 ay~~AGAd~i~~e~~~~e~~~~i~~~~~~P~~~~gag~~~dgq~lv~~d~lg~ 216 (240)
T cd06556 164 AYAPAGADLIVMECVPVELAKQITEALAIPLAGIGAGSGTDGQFLVLADAFGI 216 (240)
T ss_pred HHHHcCCCEEEEcCCCHHHHHHHHHhCCCCEEEEecCcCCCceEEeHHhhhcc
Confidence 256789999999997777777777765445542 22 2466666666543
No 344
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=68.94 E-value=11 Score=35.34 Aligned_cols=67 Identities=12% Similarity=0.139 Sum_probs=40.9
Q ss_pred CcccEEEecCcccc------ccChhHHHHHHHHHHhC-C-----ceec----CCcHHHHHHHhCCchHHHHHHHHHHcCC
Q 026320 3 QFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQH-D-----VYVS----TGDWAEHLIRNGPSAFKEYVEDCKQVGF 66 (240)
Q Consensus 3 ~yID~lKfg~GTs~------l~p~~~l~eKi~l~~~~-g-----V~v~----~Gtl~E~a~~qg~~~~~~yl~~~k~lGF 66 (240)
+|.|++=+-+++-. ...++.+.+.++-.++. + +++. |+. .. +.+.+..+.+.+.|.
T Consensus 168 ~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~------~~--~~~~~ia~~l~~~Ga 239 (344)
T PRK05286 168 PYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDL------SD--EELDDIADLALEHGI 239 (344)
T ss_pred hhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCC------CH--HHHHHHHHHHHHhCC
Confidence 45666666554332 33445566666666652 2 4333 330 01 146678888899999
Q ss_pred CEEEecCCccc
Q 026320 67 DTIELNVGSLE 77 (240)
Q Consensus 67 ~~IEISdGti~ 77 (240)
|.|.+++++.+
T Consensus 240 dgi~~~nt~~~ 250 (344)
T PRK05286 240 DGVIATNTTLS 250 (344)
T ss_pred cEEEEeCCccc
Confidence 99999999854
No 345
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=68.91 E-value=29 Score=32.30 Aligned_cols=26 Identities=12% Similarity=0.063 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEI 78 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l 78 (240)
.+.++.+.|++.|.++|-+++.+..+
T Consensus 178 ~~~~~a~~l~~~G~dgI~~~n~~~~~ 203 (334)
T PRK07565 178 NLANMAKRLDAAGADGLVLFNRFYQP 203 (334)
T ss_pred hHHHHHHHHHHcCCCeEEEECCcCCC
Confidence 46788889999999999999887544
No 346
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=68.86 E-value=31 Score=30.69 Aligned_cols=87 Identities=11% Similarity=0.214 Sum_probs=53.1
Q ss_pred EecCccccccChhHHHHHHHHHHhCCceec---------CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe---c-CCc
Q 026320 9 KFSGGSHSLMPKPFIEEVVKRAHQHDVYVS---------TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL---N-VGS 75 (240)
Q Consensus 9 Kfg~GTs~l~p~~~l~eKi~l~~~~gV~v~---------~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEI---S-dGt 75 (240)
|.-.||.++.+++.+++-.+.+-+. |.++ +-+|.|. ..-...++++++.++|+..|=+ + |||
T Consensus 101 kvvigt~a~~~~~~l~~~~~~fg~~-ivvslD~~~g~v~~~gw~~~----~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt 175 (234)
T PRK13587 101 YCIVGTKGIQDTDWLKEMAHTFPGR-IYLSVDAYGEDIKVNGWEED----TELNLFSFVRQLSDIPLGGIIYTDIAKDGK 175 (234)
T ss_pred EEEECchHhcCHHHHHHHHHHcCCC-EEEEEEeeCCEEEecCCccc----CCCCHHHHHHHHHHcCCCEEEEecccCcCC
Confidence 6678999999999999887776322 3332 2235442 1236799999999999886543 2 566
Q ss_pred ccCChhHHHHHHHHHHH-cCCcccceeee
Q 026320 76 LEIPEETLLRYVRLVKS-AGLKAKPKFAV 103 (240)
Q Consensus 76 i~l~~~~r~~lI~~~~~-~G~~v~~E~g~ 103 (240)
..=++-+ +++.+.+ .+..++..-|+
T Consensus 176 ~~G~~~~---li~~l~~~~~ipvi~~GGi 201 (234)
T PRK13587 176 MSGPNFE---LTGQLVKATTIPVIASGGI 201 (234)
T ss_pred CCccCHH---HHHHHHHhCCCCEEEeCCC
Confidence 6555544 4444444 23444444333
No 347
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=68.84 E-value=25 Score=31.19 Aligned_cols=75 Identities=21% Similarity=0.329 Sum_probs=52.2
Q ss_pred EecCccccccChhHHHHHHHHHHhCCce----ecCC-----cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC----Cc
Q 026320 9 KFSGGSHSLMPKPFIEEVVKRAHQHDVY----VSTG-----DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV----GS 75 (240)
Q Consensus 9 Kfg~GTs~l~p~~~l~eKi~l~~~~gV~----v~~G-----tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd----Gt 75 (240)
|.+.||+++.+++.+++-++.+.+. |. +..| +|-+ ... ...++.+.+.+.|++.+=+-+ |+
T Consensus 100 kvviGs~~l~~p~l~~~i~~~~~~~-i~vsld~~~~~v~~~Gw~~---~~~--~~~~~~~~l~~~G~~~iiv~~~~~~g~ 173 (241)
T PRK14024 100 RVNIGTAALENPEWCARVIAEHGDR-VAVGLDVRGHTLAARGWTR---DGG--DLWEVLERLDSAGCSRYVVTDVTKDGT 173 (241)
T ss_pred EEEECchHhCCHHHHHHHHHHhhhh-EEEEEEEeccEeccCCeee---cCc--cHHHHHHHHHhcCCCEEEEEeecCCCC
Confidence 7889999999999999998888654 32 2112 4543 222 678899999999999887754 33
Q ss_pred ccCChhHHHHHHHHHHH
Q 026320 76 LEIPEETLLRYVRLVKS 92 (240)
Q Consensus 76 i~l~~~~r~~lI~~~~~ 92 (240)
..=+ + .++|+.+++
T Consensus 174 ~~G~--d-~~~i~~i~~ 187 (241)
T PRK14024 174 LTGP--N-LELLREVCA 187 (241)
T ss_pred ccCC--C-HHHHHHHHh
Confidence 3322 2 467777776
No 348
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=68.81 E-value=11 Score=33.18 Aligned_cols=94 Identities=16% Similarity=0.266 Sum_probs=57.3
Q ss_pred HHHcCCCEEEecCCcccC-ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHH
Q 026320 61 CKQVGFDTIELNVGSLEI-PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 139 (240)
Q Consensus 61 ~k~lGF~~IEISdGti~l-~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i 139 (240)
..+.|++.+=|=|=.-.+ ....-.++|+++.+.-+ +.++-+. |..+ .
T Consensus 38 ~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~~~-----~~i~vgG-----------------------GIrs----~ 85 (229)
T PF00977_consen 38 FNEQGADELHIVDLDAAKEGRGSNLELIKEIAKETG-----IPIQVGG-----------------------GIRS----I 85 (229)
T ss_dssp HHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHHSS-----SEEEEES-----------------------SE-S----H
T ss_pred HHHcCCCEEEEEEccCcccCchhHHHHHHHHHhcCC-----ccEEEeC-----------------------ccCc----H
Confidence 368899988887644444 44556688888887421 1221111 0112 6
Q ss_pred HHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCch
Q 026320 140 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPR 192 (240)
Q Consensus 140 ~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifEAP~k~ 192 (240)
+.+++-|++||++|++=+.-+. +.++++++++.+|.+++++=-.-+.
T Consensus 86 ed~~~ll~~Ga~~Vvigt~~~~------~~~~l~~~~~~~g~~~ivvslD~~~ 132 (229)
T PF00977_consen 86 EDAERLLDAGADRVVIGTEALE------DPELLEELAERYGSQRIVVSLDARD 132 (229)
T ss_dssp HHHHHHHHTT-SEEEESHHHHH------CCHHHHHHHHHHGGGGEEEEEEEEE
T ss_pred HHHHHHHHhCCCEEEeChHHhh------chhHHHHHHHHcCcccEEEEEEeee
Confidence 7888999999999999765221 2456777777777777776555433
No 349
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=68.60 E-value=9.5 Score=38.52 Aligned_cols=52 Identities=12% Similarity=0.179 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHcCCCEEEecC------------------CcccC-----------C-------hhHHHHHHHHHHHcCCc
Q 026320 53 AFKEYVEDCKQVGFDTIELNV------------------GSLEI-----------P-------EETLLRYVRLVKSAGLK 96 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISd------------------Gti~l-----------~-------~~~r~~lI~~~~~~G~~ 96 (240)
.+.+-|.++++||+++||++= |.-.. + .++..++|+.++++|++
T Consensus 165 g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~ 244 (605)
T TIGR02104 165 GVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIR 244 (605)
T ss_pred cchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCE
Confidence 456778999999999999842 22111 1 37899999999999999
Q ss_pred ccceeeee
Q 026320 97 AKPKFAVM 104 (240)
Q Consensus 97 v~~E~g~k 104 (240)
|+-.+-..
T Consensus 245 VilDvV~N 252 (605)
T TIGR02104 245 VIMDVVYN 252 (605)
T ss_pred EEEEEEcC
Confidence 99887764
No 350
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=68.46 E-value=15 Score=35.89 Aligned_cols=67 Identities=18% Similarity=0.328 Sum_probs=42.3
Q ss_pred HHHHHHcCCCEEEecCC--cccCC---------h-hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccC
Q 026320 58 VEDCKQVGFDTIELNVG--SLEIP---------E-ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 125 (240)
Q Consensus 58 l~~~k~lGF~~IEISdG--ti~l~---------~-~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 125 (240)
.+.+.+.|+|+|-|+.| ++..+ . ..-.++.+.+++.|..++++=|++.
T Consensus 279 a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~-------------------- 338 (450)
T TIGR01302 279 AKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRY-------------------- 338 (450)
T ss_pred HHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCC--------------------
Confidence 44567789999998754 33222 1 1112344445566777777666643
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
-..+...|++||+.||+=+
T Consensus 339 -------------~~di~kAla~GA~~V~~G~ 357 (450)
T TIGR01302 339 -------------SGDIVKALAAGADAVMLGS 357 (450)
T ss_pred -------------HHHHHHHHHcCCCEEEECc
Confidence 2345677999999999865
No 351
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=68.30 E-value=20 Score=33.33 Aligned_cols=42 Identities=12% Similarity=0.157 Sum_probs=34.8
Q ss_pred HHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccC--CCceEEecC
Q 026320 139 IRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG--LEKTMFEAT 189 (240)
Q Consensus 139 i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~--~~~lifEAP 189 (240)
+++++..+++|||.||. +|+..+.+.+.+..+. -.++..||.
T Consensus 199 leqa~ea~~agaDiI~L---------Dn~~~e~l~~av~~~~~~~~~~~leaS 242 (284)
T PRK06096 199 PKEAIAALRAQPDVLQL---------DKFSPQQATEIAQIAPSLAPHCTLSLA 242 (284)
T ss_pred HHHHHHHHHcCCCEEEE---------CCCCHHHHHHHHHHhhccCCCeEEEEE
Confidence 78888889999999999 5888999988887664 257788887
No 352
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=68.12 E-value=47 Score=30.57 Aligned_cols=111 Identities=18% Similarity=0.232 Sum_probs=83.0
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHH
Q 026320 58 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 137 (240)
Q Consensus 58 l~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 137 (240)
+.+++..|-|+|=+=-. -|++++..++.+.+++.||.|+.|++-
T Consensus 122 I~~Ar~~GADavLLI~~--~L~~~~l~el~~~A~~LGm~~LVEVh~---------------------------------- 165 (254)
T COG0134 122 IYEARAAGADAVLLIVA--ALDDEQLEELVDRAHELGMEVLVEVHN---------------------------------- 165 (254)
T ss_pred HHHHHHcCcccHHHHHH--hcCHHHHHHHHHHHHHcCCeeEEEECC----------------------------------
Confidence 67888999888754322 567888899999999999999999876
Q ss_pred HHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCce-EEecCC-chhHHHHHHHhCCCccc
Q 026320 138 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEATN-PRTSEWFIRRYGPKVNL 207 (240)
Q Consensus 138 ~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~l-ifEAP~-k~qQ~~~I~~fG~~VNL 207 (240)
.+.+++.+++||..|=|--|.+.+= ++.-+.-.+++..+|-+.+ |=|.=- ...+...+.++|.|-=|
T Consensus 166 -~eEl~rAl~~ga~iIGINnRdL~tf--~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~L 234 (254)
T COG0134 166 -EEELERALKLGAKIIGINNRDLTTL--EVDLETTEKLAPLIPKDVILISESGISTPEDVRRLAKAGADAFL 234 (254)
T ss_pred -HHHHHHHHhCCCCEEEEeCCCcchh--eecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 4677888999999999988866332 2223446778788886544 456653 36788888888887666
No 353
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=67.93 E-value=25 Score=30.89 Aligned_cols=83 Identities=18% Similarity=0.118 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHhCCceecC---CcH--H------HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc--cC-Ch-----
Q 026320 20 KPFIEEVVKRAHQHDVYVST---GDW--A------EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL--EI-PE----- 80 (240)
Q Consensus 20 ~~~l~eKi~l~~~~gV~v~~---Gtl--~------E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti--~l-~~----- 80 (240)
...+++--+.++++|+.++. ++. + +-...+....+++.++.|+.||.++|=+..+.. .- +.
T Consensus 51 ~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~ 130 (284)
T PRK13210 51 KEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR 130 (284)
T ss_pred HHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH
Confidence 45588888899999997652 210 1 111111112689999999999999998853321 11 11
Q ss_pred --hHHHHHHHHHHHcCCcccceee
Q 026320 81 --ETLLRYVRLVKSAGLKAKPKFA 102 (240)
Q Consensus 81 --~~r~~lI~~~~~~G~~v~~E~g 102 (240)
+...++.+.+++.|.+..-|..
T Consensus 131 ~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 131 FIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEec
Confidence 1245677888889998777764
No 354
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=67.87 E-value=26 Score=31.53 Aligned_cols=69 Identities=16% Similarity=0.152 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccC
Q 026320 55 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 134 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 134 (240)
....+.+...|||.|-|.-=--.++.++...+|+.++..|..++. -+ + .. +
T Consensus 23 p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~V--Rv-------~-~~-------------------~ 73 (249)
T TIGR02311 23 PYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVV--RP-------A-IG-------------------D 73 (249)
T ss_pred cHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEE--EC-------C-CC-------------------C
Confidence 456777888999999887555557888888888887776654332 22 1 00 1
Q ss_pred HHHHHHHHHHHHHcCCcEEEEe
Q 026320 135 VDLLIRRAERCLEAGADMIMID 156 (240)
Q Consensus 135 ~~~~i~~~~~dLeAGA~~ViiE 156 (240)
+ ..+++.|++||+-||+=
T Consensus 74 ~----~~i~~~Ld~Ga~gIivP 91 (249)
T TIGR02311 74 P----VLIKQLLDIGAQTLLVP 91 (249)
T ss_pred H----HHHHHHhCCCCCEEEec
Confidence 1 25788899999999873
No 355
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=67.75 E-value=28 Score=31.54 Aligned_cols=90 Identities=24% Similarity=0.386 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhCCceecC--CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec-CCcc---cCChhHHHHHHHHHHHcCC
Q 026320 22 FIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN-VGSL---EIPEETLLRYVRLVKSAGL 95 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~--Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS-dGti---~l~~~~r~~lI~~~~~~G~ 95 (240)
.+.+.+...|.+|...+. .|+=|.. .|.++|||.|==- .|.. .-|.+--..+++.+.+.|.
T Consensus 115 ~~~~~i~~~k~~~~l~MAD~St~ee~l-------------~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~~~~ 181 (229)
T COG3010 115 DLEELIARIKYPGQLAMADCSTFEEGL-------------NAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSDAGC 181 (229)
T ss_pred hHHHHHHHhhcCCcEEEeccCCHHHHH-------------HHHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHhCCC
Confidence 455555555555554443 2333322 4678999988311 1111 2445555689999999999
Q ss_pred cccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 96 KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 96 ~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
.|+-|=... + -+++++.++.||+-|+|=+
T Consensus 182 ~vIAEGr~~------------------t---------------P~~Ak~a~~~Ga~aVvVGs 210 (229)
T COG3010 182 RVIAEGRYN------------------T---------------PEQAKKAIEIGADAVVVGS 210 (229)
T ss_pred eEEeeCCCC------------------C---------------HHHHHHHHHhCCeEEEECc
Confidence 988875441 2 2578889999999999965
No 356
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=67.48 E-value=30 Score=32.11 Aligned_cols=99 Identities=24% Similarity=0.346 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhCCceecC--CcH--------HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc--------cCChhHH
Q 026320 22 FIEEVVKRAHQHDVYVST--GDW--------AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL--------EIPEETL 83 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~--Gtl--------~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti--------~l~~~~r 83 (240)
.-|+-+++||.+||.|-. |.. -+..+.. ..++-.+.+++.|.|++-||-||. .|..+ |
T Consensus 119 ~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT---~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~-~ 194 (285)
T PRK07709 119 TTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYA---DPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFA-E 194 (285)
T ss_pred HHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCC---CHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHH-H
Confidence 457889999999997753 421 1111122 456666667777999999999997 34443 2
Q ss_pred HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 84 LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 84 ~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
++-|+...+ .| -|.++.|.++ -+++++.++.|..+|=|-.+
T Consensus 195 L~~I~~~~~-----iP--LVLHGgSG~~---------------------------~e~~~~ai~~Gi~KiNi~T~ 235 (285)
T PRK07709 195 MEQVRDFTG-----VP--LVLHGGTGIP---------------------------TADIEKAISLGTSKINVNTE 235 (285)
T ss_pred HHHHHHHHC-----CC--EEEeCCCCCC---------------------------HHHHHHHHHcCCeEEEeChH
Confidence 333333322 23 2555554442 36678889999999966553
No 357
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=67.38 E-value=12 Score=29.98 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=28.2
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHc--CCcccc
Q 026320 58 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA--GLKAKP 99 (240)
Q Consensus 58 l~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~--G~~v~~ 99 (240)
.+.+++.|+|.|+|..+....+. .-.++++.+++. ++.+..
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~~~-~~~~~~~~i~~~~~~~~v~~ 119 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYLAR-EDLELIRELREAVPDVKVVV 119 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcHHH-HHHHHHHHHHHhcCCceEEE
Confidence 46899999999999998865533 334666766664 444433
No 358
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=67.30 E-value=35 Score=30.92 Aligned_cols=64 Identities=25% Similarity=0.225 Sum_probs=42.2
Q ss_pred CCCEEEecCCccc---------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCH
Q 026320 65 GFDTIELNVGSLE---------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 135 (240)
Q Consensus 65 GF~~IEISdGti~---------l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~ 135 (240)
++++||++=|+-. -..+...++++.+++.- -+| +.+|-. .+.
T Consensus 118 ~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~--~~p-v~vKi~--------------------------~~~ 168 (300)
T TIGR01037 118 YVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT--DVP-VFAKLS--------------------------PNV 168 (300)
T ss_pred ccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCC-EEEECC--------------------------CCh
Confidence 3999999877533 24466778888888741 112 444421 023
Q ss_pred HHHHHHHHHHHHcCCcEEEEec
Q 026320 136 DLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 136 ~~~i~~~~~dLeAGA~~ViiEa 157 (240)
++.++.++...++|++.|.+=.
T Consensus 169 ~~~~~~a~~l~~~G~d~i~v~n 190 (300)
T TIGR01037 169 TDITEIAKAAEEAGADGLTLIN 190 (300)
T ss_pred hhHHHHHHHHHHcCCCEEEEEc
Confidence 5567778888899999998853
No 359
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=67.24 E-value=82 Score=30.74 Aligned_cols=94 Identities=21% Similarity=0.318 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChh------------HHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEE------------TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 120 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~------------~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~ 120 (240)
..+.=++.+.+-|.+.|-|-..+=++-.+ .-.+.|+.++++|+.+. +...+ .
T Consensus 77 ~~~~~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~--~~~Ed----------~---- 140 (409)
T COG0119 77 AIKRDIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVR--FSAED----------A---- 140 (409)
T ss_pred hHHhhHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE--EEeec----------c----
Confidence 45667888999999998887666543332 23456778888874332 11211 0
Q ss_pred ccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHh
Q 026320 121 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 177 (240)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~ 177 (240)
+ ..+++.+++.++...++||+.|. ++|..|-..+..+.++++
T Consensus 141 --~--------rt~~~~l~~~~~~~~~~ga~~i~-----l~DTvG~~~P~~~~~~i~ 182 (409)
T COG0119 141 --T--------RTDPEFLAEVVKAAIEAGADRIN-----LPDTVGVATPNEVADIIE 182 (409)
T ss_pred --c--------cCCHHHHHHHHHHHHHcCCcEEE-----ECCCcCccCHHHHHHHHH
Confidence 0 12689999999999999998885 578888888877777765
No 360
>PRK06267 hypothetical protein; Provisional
Probab=67.12 E-value=61 Score=30.50 Aligned_cols=53 Identities=17% Similarity=0.138 Sum_probs=33.6
Q ss_pred cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEE
Q 026320 77 EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 155 (240)
Q Consensus 77 ~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~Vii 155 (240)
..+.+++.+.++.+++.|+++.+-+-+ +..+ +.+++.+.++.--+.+++.|.+
T Consensus 149 ~~s~ed~~~~l~~ak~aGi~v~~g~Ii--GlgE------------------------t~ed~~~~l~~l~~l~~d~v~~ 201 (350)
T PRK06267 149 GKPLDKIKEMLLKAKDLGLKTGITIIL--GLGE------------------------TEDDIEKLLNLIEELDLDRITF 201 (350)
T ss_pred CCCHHHHHHHHHHHHHcCCeeeeeEEE--eCCC------------------------CHHHHHHHHHHHHHcCCCEEEE
Confidence 356778888999999999887553322 2110 2455566666666778887643
No 361
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=67.06 E-value=95 Score=29.58 Aligned_cols=114 Identities=17% Similarity=0.324 Sum_probs=70.0
Q ss_pred ccChhHHHHHHHHHHhCCc-eec-CCcHHHHHHHhCCchHHHHHHHHHHc-CCCEEEe-cCCcccCChhHHHHHHHHHHH
Q 026320 17 LMPKPFIEEVVKRAHQHDV-YVS-TGDWAEHLIRNGPSAFKEYVEDCKQV-GFDTIEL-NVGSLEIPEETLLRYVRLVKS 92 (240)
Q Consensus 17 l~p~~~l~eKi~l~~~~gV-~v~-~Gtl~E~a~~qg~~~~~~yl~~~k~l-GF~~IEI-SdGti~l~~~~r~~lI~~~~~ 92 (240)
+++.+.+.+.++.+.+.|| .+. +|| |-.+.. .+.+.++.++++ |+..|-| +||+. ++ +.++..++
T Consensus 89 ~ls~eei~~~i~~~~~~Gv~~I~~tGG--EPllr~---dl~eli~~l~~~~gi~~i~itTNG~l-L~-----~~~~~L~~ 157 (373)
T PLN02951 89 LLSQDEIVRLAGLFVAAGVDKIRLTGG--EPTLRK---DIEDICLQLSSLKGLKTLAMTTNGIT-LS-----RKLPRLKE 157 (373)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEECC--CCcchh---hHHHHHHHHHhcCCCceEEEeeCcch-HH-----HHHHHHHh
Confidence 4566778889999999998 333 454 444444 588999999998 9976654 67876 22 12456677
Q ss_pred cCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 93 AGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 93 ~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
+|+. .+.+.-.. . +...+ ..++ +..+.+..++.++..+++|-..|.+..
T Consensus 158 aGld---~VnISLDs--l---~~e~~-~~it-------r~~~~~~vl~~I~~a~~~G~~~vkin~ 206 (373)
T PLN02951 158 AGLT---SLNISLDT--L---VPAKF-EFLT-------RRKGHDRVLESIDTAIELGYNPVKVNC 206 (373)
T ss_pred CCCC---eEEEeecc--C---CHHHH-HHHh-------cCCCHHHHHHHHHHHHHcCCCcEEEEE
Confidence 7765 23342111 0 00001 1111 112458889999999999976665554
No 362
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=67.03 E-value=39 Score=35.10 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEec
Q 026320 134 DVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
++++.++.++..-++|+|+|-|=+
T Consensus 636 ~~~~~~~~~~~l~~~g~d~i~vs~ 659 (765)
T PRK08255 636 TPDDAVEIARAFKAAGADLIDVSS 659 (765)
T ss_pred CHHHHHHHHHHHHhcCCcEEEeCC
Confidence 578888888888899999998843
No 363
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=67.00 E-value=17 Score=37.78 Aligned_cols=131 Identities=15% Similarity=0.199 Sum_probs=68.5
Q ss_pred ccccccChhHHHHHHHHHHhC---C----ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC------
Q 026320 13 GSHSLMPKPFIEEVVKRAHQH---D----VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP------ 79 (240)
Q Consensus 13 GTs~l~p~~~l~eKi~l~~~~---g----V~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~------ 79 (240)
|-|..=.-..+.|.++..|+. + |++++.+|.+--+.. +..-++.+.+.+.|.|.|+||.|...-.
T Consensus 594 GGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~--~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~ 671 (765)
T PRK08255 594 GGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTP--DDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYG 671 (765)
T ss_pred CCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCH--HHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcC
Confidence 334333344677777777773 3 355554555421111 1233566677778999999998864311
Q ss_pred hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcC-CcEEEEecc
Q 026320 80 EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG-ADMIMIDSD 158 (240)
Q Consensus 80 ~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAG-A~~ViiEar 158 (240)
..-...+.+.+++. +++. ..-+| ... | .+.+++.|+.| ||.|++ +|
T Consensus 672 ~~~~~~~~~~ik~~-------~~~p--v~~~G--------~i~-----------~----~~~a~~~l~~g~~D~v~~-gR 718 (765)
T PRK08255 672 RMYQTPFADRIRNE-------AGIA--TIAVG--------AIS-----------E----ADHVNSIIAAGRADLCAL-AR 718 (765)
T ss_pred ccccHHHHHHHHHH-------cCCE--EEEeC--------CCC-----------C----HHHHHHHHHcCCcceeeE-cH
Confidence 01112344444442 2221 11111 111 2 45667777766 899888 56
Q ss_pred ccccCCCCccHHHHHHHHhccCCCc
Q 026320 159 DVCKHADSLRADIIAKVIGRLGLEK 183 (240)
Q Consensus 159 gi~d~~g~~r~d~v~~i~~~~~~~~ 183 (240)
+..- +++.+.+.+.+++.+.
T Consensus 719 ~~l~-----dP~~~~~~~~~~~~~~ 738 (765)
T PRK08255 719 PHLA-----DPAWTLHEAAEIGYRD 738 (765)
T ss_pred HHHh-----CccHHHHHHHHcCCCC
Confidence 4322 2346666777776653
No 364
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=66.89 E-value=47 Score=30.03 Aligned_cols=98 Identities=21% Similarity=0.270 Sum_probs=56.5
Q ss_pred ChhHHHHHHHHHHhCCceecC--CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc
Q 026320 19 PKPFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA 93 (240)
Q Consensus 19 p~~~l~eKi~l~~~~gV~v~~--Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdG---ti~l~~~~r~~lI~~~~~~ 93 (240)
+.+.|++-++.+|++|..+.- -+.-|. +.+.++|++.|=+++- +...+.+.-.++++...+
T Consensus 145 ~~~~l~~li~~a~~lGl~~lvevh~~~E~-------------~~A~~~gadiIgin~rdl~~~~~d~~~~~~l~~~~p~- 210 (260)
T PRK00278 145 DDEQLKELLDYAHSLGLDVLVEVHDEEEL-------------ERALKLGAPLIGINNRNLKTFEVDLETTERLAPLIPS- 210 (260)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCHHHH-------------HHHHHcCCCEEEECCCCcccccCCHHHHHHHHHhCCC-
Confidence 456788888888888875432 233332 2355778888888752 333343333333332211
Q ss_pred CCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCC
Q 026320 94 GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHA 164 (240)
Q Consensus 94 G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~ 164 (240)
...++.|-|+. + .+.+++.+++||+-|+| ++.|+...
T Consensus 211 ~~~vIaegGI~-----------------------------t----~ed~~~~~~~Gad~vlV-GsaI~~~~ 247 (260)
T PRK00278 211 DRLVVSESGIF-----------------------------T----PEDLKRLAKAGADAVLV-GESLMRAD 247 (260)
T ss_pred CCEEEEEeCCC-----------------------------C----HHHHHHHHHcCCCEEEE-CHHHcCCC
Confidence 12344444441 1 46677788999999987 44566543
No 365
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=66.85 E-value=51 Score=29.33 Aligned_cols=88 Identities=7% Similarity=0.136 Sum_probs=52.6
Q ss_pred cCCCEEEecCCcccC-ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHH
Q 026320 64 VGFDTIELNVGSLEI-PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRA 142 (240)
Q Consensus 64 lGF~~IEISdGti~l-~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~ 142 (240)
-|++.+=|=|=.-.. ....-..+|++..+. ++.+. .+| |. ..+ .+.+
T Consensus 44 ~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~-------~~~pi---~vG-------GG-----------Irs----~e~v 91 (234)
T PRK13587 44 ECVNRIHIVDLIGAKAQHAREFDYIKSLRRL-------TTKDI---EVG-------GG-----------IRT----KSQI 91 (234)
T ss_pred cCCCEEEEEECcccccCCcchHHHHHHHHhh-------cCCeE---EEc-------CC-----------cCC----HHHH
Confidence 589988887655443 444556788888762 22211 111 01 112 6788
Q ss_pred HHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCC
Q 026320 143 ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATN 190 (240)
Q Consensus 143 ~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifEAP~ 190 (240)
++.|++||++|++=+.-+. ++++++++.+++| ++++.=-..
T Consensus 92 ~~~l~~Ga~kvvigt~a~~------~~~~l~~~~~~fg-~~ivvslD~ 132 (234)
T PRK13587 92 MDYFAAGINYCIVGTKGIQ------DTDWLKEMAHTFP-GRIYLSVDA 132 (234)
T ss_pred HHHHHCCCCEEEECchHhc------CHHHHHHHHHHcC-CCEEEEEEe
Confidence 9999999999998543111 3566666666665 555554443
No 366
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=66.69 E-value=11 Score=39.56 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=38.6
Q ss_pred HHHHHHHHHcCCCEEEecCCcc--------------------cCChhHHHHHHHHHHHcCCcccceeeee
Q 026320 55 KEYVEDCKQVGFDTIELNVGSL--------------------EIPEETLLRYVRLVKSAGLKAKPKFAVM 104 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGti--------------------~l~~~~r~~lI~~~~~~G~~v~~E~g~k 104 (240)
++-+.++|+|||++|+++-=+- -=+.++..++|+.+.++|++|+-.+-..
T Consensus 254 ~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~n 323 (758)
T PLN02447 254 DDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVHS 323 (758)
T ss_pred HHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 4458899999999999873111 0124788899999999999999887664
No 367
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=66.58 E-value=67 Score=28.66 Aligned_cols=115 Identities=23% Similarity=0.305 Sum_probs=70.4
Q ss_pred EEEecCccccccChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh-----
Q 026320 7 GLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE----- 80 (240)
Q Consensus 7 ~lKfg~GTs~l~p~~~l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~----- 80 (240)
.+=|++|--.+.+ .+.+.++.+++. +++++..|.- .. --+++++..+++|++.|-||-...+-..
T Consensus 68 ~v~~~gGEPll~~--d~~ei~~~~~~~~~~~~~~~TnG-~~------~~~~~~~~l~~~g~~~v~iSid~~~~e~hd~~r 138 (347)
T COG0535 68 VVIFTGGEPLLRP--DLLEIVEYARKKGGIRVSLSTNG-TL------LTEEVLEKLKEAGLDYVSISLDGLDPETHDPIR 138 (347)
T ss_pred EEEEeCCCccccc--cHHHHHHHHhhcCCeEEEEeCCC-cc------CCHHHHHHHHhcCCcEEEEEecCCChhhhhhhc
Confidence 3445666666664 688888888855 6655533221 00 1246677789999999999977654332
Q ss_pred ------hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEE
Q 026320 81 ------ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIM 154 (240)
Q Consensus 81 ------~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~Vi 154 (240)
+...+.|+.+++.|+.+..=+.+. + .+..++.+.++...+.|++...
T Consensus 139 g~~g~~~~~~~~i~~~~~~g~~~~~~~~v~--------~-------------------~n~~~l~~~~~~~~~~g~~~~~ 191 (347)
T COG0535 139 GVKGVFKRAVEAIKNLKEAGILVVINTTVT--------K-------------------INYDELPEIADLAAELGVDELN 191 (347)
T ss_pred CCCcHHHHHHHHHHHHHHcCCeeeEEEEEe--------c-------------------CcHHHHHHHHHHHHHcCCCEEE
Confidence 345667888888777532222221 0 1246666777777799987665
Q ss_pred Eec
Q 026320 155 IDS 157 (240)
Q Consensus 155 iEa 157 (240)
+-.
T Consensus 192 ~~~ 194 (347)
T COG0535 192 VFP 194 (347)
T ss_pred EEE
Confidence 543
No 368
>PLN02591 tryptophan synthase
Probab=66.56 E-value=45 Score=30.29 Aligned_cols=62 Identities=10% Similarity=0.134 Sum_probs=39.4
Q ss_pred HHHHHHHHHhCCc--eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCc
Q 026320 23 IEEVVKRAHQHDV--YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 96 (240)
Q Consensus 23 l~eKi~l~~~~gV--~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~ 96 (240)
+++-++.|++.|| -+.|.=-+ +..++|.+.|++.|++.|-+-.-+. .++|.+.|.... .||.
T Consensus 95 ~~~F~~~~~~aGv~GviipDLP~--------ee~~~~~~~~~~~gl~~I~lv~Ptt---~~~ri~~ia~~~-~gFI 158 (250)
T PLN02591 95 IDKFMATIKEAGVHGLVVPDLPL--------EETEALRAEAAKNGIELVLLTTPTT---PTERMKAIAEAS-EGFV 158 (250)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCH--------HHHHHHHHHHHHcCCeEEEEeCCCC---CHHHHHHHHHhC-CCcE
Confidence 5667778888887 44454212 2567888899999999887654332 245656665553 4555
No 369
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=66.33 E-value=19 Score=34.48 Aligned_cols=111 Identities=15% Similarity=0.213 Sum_probs=0.0
Q ss_pred EEecCccccccChhHH----------------HHHHHHHHhCCceecC--CcHH---------H-----------HHHHh
Q 026320 8 LKFSGGSHSLMPKPFI----------------EEVVKRAHQHDVYVST--GDWA---------E-----------HLIRN 49 (240)
Q Consensus 8 lKfg~GTs~l~p~~~l----------------~eKi~l~~~~gV~v~~--Gtl~---------E-----------~a~~q 49 (240)
++.|| ||..++-..| ++-+++||.+||.|-. |.+. | ..+..
T Consensus 93 i~~GF-tSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~~~~~T 171 (347)
T TIGR01521 93 IQLGF-TSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETGMGEAEDGHGFEGVLDHSQLLT 171 (347)
T ss_pred HHcCC-CEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeecccccccccccccCcccccccchhhcCC
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcccCChh---------HHHHHHHHHHHcCCcccceee----eecCCCCCCCcccc
Q 026320 50 GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEE---------TLLRYVRLVKSAGLKAKPKFA----VMFNKSDIPSDRDR 116 (240)
Q Consensus 50 g~~~~~~yl~~~k~lGF~~IEISdGti~l~~~---------~r~~lI~~~~~~G~~v~~E~g----~k~~~~evg~~~d~ 116 (240)
.-++-.+.+++.|.|++=||-||.-=.-. -....++..++ .++ |.++.|.+
T Consensus 172 ---~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~-------~v~~vPLVLHGgSG~------ 235 (347)
T TIGR01521 172 ---DPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHA-------RLPDTHLVMHGSSSV------ 235 (347)
T ss_pred ---CHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHc-------cCCCCCEEEeCCCCC------
Q ss_pred ccccccccCCCCcccccCHHHH------------------HHHHHHHHHcCCcEE
Q 026320 117 AFGAYVARAPRSTEYVEDVDLL------------------IRRAERCLEAGADMI 153 (240)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~------------------i~~~~~dLeAGA~~V 153 (240)
++++ -+++++.++.|..+|
T Consensus 236 ------------------p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~KV 272 (347)
T TIGR01521 236 ------------------PQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGVRKV 272 (347)
T ss_pred ------------------chHhhHHHHhhcccccccCCCCHHHHHHHHHCCCeeE
No 370
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=66.27 E-value=14 Score=34.43 Aligned_cols=111 Identities=17% Similarity=0.158 Sum_probs=66.3
Q ss_pred cccChhHHHHHHHHHHhCCc-eecC-Cc-HHHHHHHhCCchHHHHHHHHHHcCCCEEEe-------------cCCcccCC
Q 026320 16 SLMPKPFIEEVVKRAHQHDV-YVST-GD-WAEHLIRNGPSAFKEYVEDCKQVGFDTIEL-------------NVGSLEIP 79 (240)
Q Consensus 16 ~l~p~~~l~eKi~l~~~~gV-~v~~-Gt-l~E~a~~qg~~~~~~yl~~~k~lGF~~IEI-------------SdGti~l~ 79 (240)
..++.+.+.+.++.++++|+ .++. |+ .... ..+.+.+.++.+|+.+. .+++ +.|..+
T Consensus 68 y~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~----~~~~~~~i~~~Ik~~~~-~i~~~~~t~~ei~~~~~~~g~~~-- 140 (343)
T TIGR03551 68 YLLSLEEIAERAAEAWKAGATEVCIQGGIHPDL----DGDFYLDILRAVKEEVP-GMHIHAFSPMEVYYGARNSGLSV-- 140 (343)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCC----CHHHHHHHHHHHHHHCC-CceEEecCHHHHHHHHHHcCCCH--
Confidence 45688889999999999997 3442 43 3221 22366777888887642 2333 233322
Q ss_pred hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCc
Q 026320 80 EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 151 (240)
Q Consensus 80 ~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~ 151 (240)
.+.+++.+++|+.-.++.+. |+.+ +..+ +.+.|.+. +.+++++.++..-++|=.
T Consensus 141 ----~e~l~~LkeAGl~~i~~~~~-----E~~~--~~v~-~~i~~~~~------~~~~~~~~i~~a~~~Gi~ 194 (343)
T TIGR03551 141 ----EEALKRLKEAGLDSMPGTAA-----EILD--DEVR-KVICPDKL------STAEWIEIIKTAHKLGIP 194 (343)
T ss_pred ----HHHHHHHHHhCcccccCcch-----hhcC--HHHH-HhcCCCCC------CHHHHHHHHHHHHHcCCc
Confidence 36778888899987663332 2210 0000 11222221 478899999999999973
No 371
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=66.16 E-value=40 Score=31.18 Aligned_cols=104 Identities=23% Similarity=0.252 Sum_probs=59.5
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc-------------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccc
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGS-------------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF 118 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGt-------------i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~ 118 (240)
+.+.+-.+.+.++|++.|.|+=|. +--.++.-.++++.+++.-= .-+.+|-- +|..
T Consensus 66 ~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~---~pvsvKiR---~g~~----- 134 (309)
T PF01207_consen 66 EDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVP---IPVSVKIR---LGWD----- 134 (309)
T ss_dssp HHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S---SEEEEEEE---SECT-----
T ss_pred HHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccc---cceEEecc---cccc-----
Confidence 345555666778999999999773 22345556677777776411 12444431 1101
Q ss_pred ccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-ccccCCCCccHHHHHHHHhccC
Q 026320 119 GAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-DVCKHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-gi~d~~g~~r~d~v~~i~~~~~ 180 (240)
++.++.++.++...++|++.|+|-+| .--.-.|..+.+.+.++.+.++
T Consensus 135 --------------~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ 183 (309)
T PF01207_consen 135 --------------DSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALP 183 (309)
T ss_dssp ----------------CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-T
T ss_pred --------------cchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhccc
Confidence 13577889999999999999999999 1222234677777877777665
No 372
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=66.12 E-value=28 Score=32.64 Aligned_cols=115 Identities=15% Similarity=0.250 Sum_probs=68.4
Q ss_pred HHHHHHHHhCCceec------CCc-HHH-HHHHhCCchHHHHHHHHHHcCC-CEEEecCCcccCChhHHHHHHHHHHHcC
Q 026320 24 EEVVKRAHQHDVYVS------TGD-WAE-HLIRNGPSAFKEYVEDCKQVGF-DTIELNVGSLEIPEETLLRYVRLVKSAG 94 (240)
Q Consensus 24 ~eKi~l~~~~gV~v~------~Gt-l~E-~a~~qg~~~~~~yl~~~k~lGF-~~IEISdGti~l~~~~r~~lI~~~~~~G 94 (240)
++.++.++..++.++ ||. .|| +|+.-|. ... +++|. |.|=|=|.-+.+--. -.++++++++..
T Consensus 132 ~~~V~~~~~~~~~I~dTRKT~PGlR~lekyAV~~GG-G~n------HR~gLsD~vLIkdNHi~~~G~-i~~av~~~r~~~ 203 (294)
T PRK06978 132 RRYVDRIAGTRARILDTRKTLPGLRLAQKYAVRVGG-GEN------QRLALYDGILIKENHIAAAGG-VGAALDAAFALN 203 (294)
T ss_pred HHHHHHhhCCCcEEEecCCCCCchhHHHHHHHHhcC-CcC------cCCCCCceEEEeHHHHHHhCC-HHHHHHHHHHhC
Confidence 455566666666543 674 455 4555441 111 34443 466666666554332 235777777643
Q ss_pred CcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHH
Q 026320 95 LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAK 174 (240)
Q Consensus 95 ~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~ 174 (240)
...+ +-+ | +++ +++++..+++|||.||.+ |+..+.+.+
T Consensus 204 ~~~k--IeV-----E----------------------vet----leea~eA~~aGaDiImLD---------nmspe~l~~ 241 (294)
T PRK06978 204 AGVP--VQI-----E----------------------VET----LAQLETALAHGAQSVLLD---------NFTLDMMRE 241 (294)
T ss_pred CCCc--EEE-----E----------------------cCC----HHHHHHHHHcCCCEEEEC---------CCCHHHHHH
Confidence 2111 111 0 112 788888899999999995 778888888
Q ss_pred HHhccCCCceEEecC
Q 026320 175 VIGRLGLEKTMFEAT 189 (240)
Q Consensus 175 i~~~~~~~~lifEAP 189 (240)
.+..++ .+++.||.
T Consensus 242 av~~~~-~~~~lEaS 255 (294)
T PRK06978 242 AVRVTA-GRAVLEVS 255 (294)
T ss_pred HHHhhc-CCeEEEEE
Confidence 887664 46778887
No 373
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=66.07 E-value=30 Score=30.17 Aligned_cols=78 Identities=15% Similarity=0.129 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhCCceecC-----CcHHH-----------HHHHhCCchHHHHHHHHHHcCCCEEEecCCccc--CChhH-
Q 026320 22 FIEEVVKRAHQHDVYVST-----GDWAE-----------HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--IPEET- 82 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~-----Gtl~E-----------~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~--l~~~~- 82 (240)
.+.+--++++++|+.++. +.|.. ..-... .+++.++.|+++|.+.|-+-.|... .+.++
T Consensus 40 ~~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~ 117 (254)
T TIGR03234 40 DAEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFRE--GVALAIAYARALGCPQVNCLAGKRPAGVSPEEA 117 (254)
T ss_pred CHHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHHHH--HHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHH
Confidence 467777899999997663 22210 000112 6788999999999999998888653 22222
Q ss_pred -------HHHHHHHHHHcCCccccee
Q 026320 83 -------LLRYVRLVKSAGLKAKPKF 101 (240)
Q Consensus 83 -------r~~lI~~~~~~G~~v~~E~ 101 (240)
..++.+.|++.|.++.-|.
T Consensus 118 ~~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 118 RATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3456677778887766664
No 374
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=66.04 E-value=46 Score=29.23 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhCCceec----C-CcHHHH-----------HHHhCCchHHHHHHHHHHcCCCEEEecCCccc--CChhH-
Q 026320 22 FIEEVVKRAHQHDVYVS----T-GDWAEH-----------LIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--IPEET- 82 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~----~-Gtl~E~-----------a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~--l~~~~- 82 (240)
.+++.-++++++|+.++ | |+|... .-... .+++.++.|+++|.+.|-+--|... .+.++
T Consensus 41 ~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~ 118 (258)
T PRK09997 41 DIEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPGREEEFRD--GVAAAIRYARALGNKKINCLVGKTPAGFSSEQI 118 (258)
T ss_pred CHHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCCcHHHHHH--HHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHH
Confidence 47777778889999875 2 555321 11112 5889999999999999988766542 22222
Q ss_pred H-------HHHHHHHHHcCCccccee
Q 026320 83 L-------LRYVRLVKSAGLKAKPKF 101 (240)
Q Consensus 83 r-------~~lI~~~~~~G~~v~~E~ 101 (240)
+ .++.+.+++.|++..-|.
T Consensus 119 ~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 119 HATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 3 333455667777755553
No 375
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=65.96 E-value=86 Score=31.82 Aligned_cols=131 Identities=15% Similarity=0.081 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhCCce--ecCCc-----H-HHHHHHhCCchHHHHHHHHHHcCCC------EEEecCCcccCChhHHHHHH
Q 026320 22 FIEEVVKRAHQHDVY--VSTGD-----W-AEHLIRNGPSAFKEYVEDCKQVGFD------TIELNVGSLEIPEETLLRYV 87 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~--v~~Gt-----l-~E~a~~qg~~~~~~yl~~~k~lGF~------~IEISdGti~l~~~~r~~lI 87 (240)
.+++-++++++++.. .+.|| | .|.+-.-+++.+-+.++.+.+.|-+ .|-+.|-.--..+..-.++|
T Consensus 146 ~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~a~~ag~~~~~~~~~i~l~DTvG~a~P~~~~~~i 225 (564)
T TIGR00970 146 IATDGTKLVRKCTKQAAKYPGTQWRFEYSPESFSDTELEFAKEVCEAVKEVWAPTPERPIIFNLPATVEMTTPNVYADSI 225 (564)
T ss_pred HHHHHHHHHHHhcccccccccceEEEEEecccCCCCCHHHHHHHHHHHHHhCCCccCCeeEEEeccccCccCHHHHHHHH
Confidence 345566779998752 22232 1 3444444567888999999999974 77888988888899989999
Q ss_pred HHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCC
Q 026320 88 RLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHA 164 (240)
Q Consensus 88 ~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~ 164 (240)
+.++++ +=....-+++.+ -.|...-+-.....++|||+.| |+- |+=+..
T Consensus 226 ~~l~~~~~~~~~~~l~vH~--------------------------HND~GlAvANslaAv~aGa~~v--~gt~~G~GERa 277 (564)
T TIGR00970 226 EYFSTNIAEREKVCLSLHP--------------------------HNDRGTAVAAAELGFLAGADRI--EGCLFGNGERT 277 (564)
T ss_pred HHHHHhcCcccCceEEEEE--------------------------CCCCChHHHHHHHHHHhCCCEE--EeecCcCCccc
Confidence 999874 000001133322 2234455778888899999984 664 775668
Q ss_pred CCccHHHHHHHHhccC
Q 026320 165 DSLRADIIAKVIGRLG 180 (240)
Q Consensus 165 g~~r~d~v~~i~~~~~ 180 (240)
||...+.+-..+...|
T Consensus 278 GNa~le~lv~~L~~~g 293 (564)
T TIGR00970 278 GNVDLVTLALNLYTQG 293 (564)
T ss_pred cCccHHHHHHHHHhcC
Confidence 8888776665554333
No 376
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=65.95 E-value=27 Score=32.72 Aligned_cols=65 Identities=12% Similarity=0.183 Sum_probs=45.4
Q ss_pred EEecCccccccChhHHHHHHHHHHhC-CceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc
Q 026320 8 LKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS 75 (240)
Q Consensus 8 lKfg~GTs~l~p~~~l~eKi~l~~~~-gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt 75 (240)
.|=|+|++.+-.++.+.+-++-+++. ++++.- .+|-+. .......++++.+.+.|.++|.|+..+
T Consensus 106 ~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~---~t~~~~~~~~~~l~~aG~d~i~vh~Rt 174 (333)
T PRK11815 106 QNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQ---DSYEFLCDFVDTVAEAGCDTFIVHARK 174 (333)
T ss_pred cCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCC---cCHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 35688999999999999999999874 554432 122110 000135678888899999999998654
No 377
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=65.94 E-value=8.3 Score=41.19 Aligned_cols=69 Identities=17% Similarity=0.344 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhCCc-eecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 026320 22 FIEEVVKRAHQHDV-YVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 99 (240)
Q Consensus 22 ~l~eKi~l~~~~gV-~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~ 99 (240)
.+.+.|++++++|+ .++|| ||+ +.+ .+|-+.|.+-|+..|==+--++++ .-+|.+....|.+.|+.|+|
T Consensus 68 ~IdeII~iAk~~gaDaIhPGYGfL----SEn----~efA~~c~eaGI~FIGP~~e~ld~-~GdKv~Ar~~A~~agvPvip 138 (1149)
T COG1038 68 SIDEIIRIAKRSGADAIHPGYGFL----SEN----PEFARACAEAGITFIGPKPEVLDM-LGDKVKARNAAIKAGVPVIP 138 (1149)
T ss_pred cHHHHHHHHHHcCCCeecCCcccc----cCC----HHHHHHHHHcCCEEeCCCHHHHHH-hccHHHHHHHHHHcCCCccC
Confidence 48899999999999 78899 764 444 688899999999888666555554 23456777888888888877
No 378
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=65.60 E-value=42 Score=28.96 Aligned_cols=33 Identities=24% Similarity=0.462 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 95 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~ 95 (240)
.+++|++.++++|++.|-|+| .-+++.+++.|.
T Consensus 3 ~~~~~l~~l~~~g~dgi~v~~----------~g~~~~~k~~~~ 35 (233)
T PF01136_consen 3 ELEKYLDKLKELGVDGILVSN----------PGLLELLKELGP 35 (233)
T ss_pred HHHHHHHHHHhCCCCEEEEcC----------HHHHHHHHHhCC
Confidence 689999999999999999998 578888888843
No 379
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=65.56 E-value=24 Score=28.96 Aligned_cols=43 Identities=19% Similarity=0.316 Sum_probs=23.0
Q ss_pred HHHHHHHHHHcCCCEEE-ecCCcccCChhHHHHHHHHHHHcCCc
Q 026320 54 FKEYVEDCKQVGFDTIE-LNVGSLEIPEETLLRYVRLVKSAGLK 96 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IE-ISdGti~l~~~~r~~lI~~~~~~G~~ 96 (240)
+.+.++.+++.|+..+- +=-|.+..+..++.+.++++++.||.
T Consensus 71 ~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~ 114 (137)
T PRK02261 71 CRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFD 114 (137)
T ss_pred HHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCC
Confidence 45555666666553332 33455555555565566666665543
No 380
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=65.52 E-value=21 Score=34.20 Aligned_cols=114 Identities=17% Similarity=0.161 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHcCCCEEE---ecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 026320 53 AFKEYVEDCKQVGFDTIE---LNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 129 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IE---ISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 129 (240)
.+.+-+.++..=|.|.|- .=...--+|.++|.+++..+.++ +..|-|.+-. +-..++
T Consensus 142 ~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~---a~~eTG~~~~-----------y~~Nit------ 201 (364)
T cd08210 142 ELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAE---ANAETGGRTL-----------YAPNVT------ 201 (364)
T ss_pred HHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHH---HHhhcCCcce-----------EEEecC------
Confidence 455556666778999994 33344578999999998888772 2222223211 001111
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecc--c------cccCCC-------------------CccH-HHHHHHHhccCC
Q 026320 130 EYVEDVDLLIRRAERCLEAGADMIMIDSD--D------VCKHAD-------------------SLRA-DIIAKVIGRLGL 181 (240)
Q Consensus 130 ~~~~~~~~~i~~~~~dLeAGA~~ViiEar--g------i~d~~g-------------------~~r~-d~v~~i~~~~~~ 181 (240)
.+..+++++++...++||+.||+--- | +.++.+ .+.. -++.++....|.
T Consensus 202 ---a~~~em~~ra~~a~~~Ga~~vMv~~~~~G~~~~~~l~~~~~~l~i~aHra~~ga~~~~~~~is~~~~~~kl~RlaGa 278 (364)
T cd08210 202 ---GPPTQLLERARFAKEAGAGGVLIAPGLTGLDTFRELAEDFDFLPILAHPAFAGAFVSSGDGISHALLFGTLFRLAGA 278 (364)
T ss_pred ---CCHHHHHHHHHHHHHcCCCEEEeecccchHHHHHHHHhcCCCcEEEEccccccccccCCCcccHHHHHHHHHHHhCC
Confidence 24679999999999999999999863 2 122111 0222 247888888888
Q ss_pred CceEEecC
Q 026320 182 EKTMFEAT 189 (240)
Q Consensus 182 ~~lifEAP 189 (240)
+-+++=.|
T Consensus 279 d~~~~~~~ 286 (364)
T cd08210 279 DAVIFPNY 286 (364)
T ss_pred CEEEeCCC
Confidence 88887555
No 381
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=65.51 E-value=18 Score=37.60 Aligned_cols=61 Identities=20% Similarity=0.172 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHhCCceec--CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCc
Q 026320 20 KPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 96 (240)
Q Consensus 20 ~~~l~eKi~l~~~~gV~v~--~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~ 96 (240)
++..++-++.+|++||.+. +|+--+.|..- ++++|++.+ .-.+.+++|.++|+..++.|-.
T Consensus 448 Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~i-----------A~~lGI~~v-----~a~~~PedK~~~v~~lq~~g~~ 510 (675)
T TIGR01497 448 KGGIKERFAQLRKMGIKTIMITGDNRLTAAAI-----------AAEAGVDDF-----IAEATPEDKIALIRQEQAEGKL 510 (675)
T ss_pred hhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH-----------HHHcCCCEE-----EcCCCHHHHHHHHHHHHHcCCe
Confidence 4457778888888888544 57655555433 377787643 2468899999999999997753
No 382
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=65.40 E-value=23 Score=32.93 Aligned_cols=68 Identities=15% Similarity=0.215 Sum_probs=41.0
Q ss_pred CcccEEEecCcccc------ccChhHHHHHHHHHHhC------Cc----eecCCcHHHHHHHhCCchHHHHHHHHHHcCC
Q 026320 3 QFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQH------DV----YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGF 66 (240)
Q Consensus 3 ~yID~lKfg~GTs~------l~p~~~l~eKi~l~~~~------gV----~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF 66 (240)
++.|++=+-+++-. ...++.+.+-++..++. ++ ++.|+ +- .. .+.+..+.|.+.|.
T Consensus 159 ~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~-~~-----~~--~~~~ia~~l~~aGa 230 (327)
T cd04738 159 PYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPD-LS-----DE--ELEDIADVALEHGV 230 (327)
T ss_pred hhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCC-CC-----HH--HHHHHHHHHHHcCC
Confidence 34566665553332 34456677776666542 13 33343 11 11 45677788889999
Q ss_pred CEEEecCCcccC
Q 026320 67 DTIELNVGSLEI 78 (240)
Q Consensus 67 ~~IEISdGti~l 78 (240)
+.|.+++++..+
T Consensus 231 d~I~~~n~~~~~ 242 (327)
T cd04738 231 DGIIATNTTISR 242 (327)
T ss_pred cEEEEECCcccc
Confidence 999999987654
No 383
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=65.31 E-value=9 Score=36.03 Aligned_cols=22 Identities=14% Similarity=0.310 Sum_probs=17.6
Q ss_pred HHHHHHHHHcCCCEEEecCCcc
Q 026320 55 KEYVEDCKQVGFDTIELNVGSL 76 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGti 76 (240)
-++++.+.+.|+|+|+||.|+.
T Consensus 238 ~~i~~~L~~~GvD~I~Vs~g~~ 259 (353)
T cd04735 238 LALVDKLADKGLDYLHISLWDF 259 (353)
T ss_pred HHHHHHHHHcCCCEEEeccCcc
Confidence 4556677788999999999865
No 384
>PRK06256 biotin synthase; Validated
Probab=65.18 E-value=47 Score=30.55 Aligned_cols=113 Identities=19% Similarity=0.185 Sum_probs=69.6
Q ss_pred ccChhHHHHHHHHHHhCCc-eec--C-Cc-H----HHHH---HH---hCC---------chHHHHHHHHHHcCCCEEEec
Q 026320 17 LMPKPFIEEVVKRAHQHDV-YVS--T-GD-W----AEHL---IR---NGP---------SAFKEYVEDCKQVGFDTIELN 72 (240)
Q Consensus 17 l~p~~~l~eKi~l~~~~gV-~v~--~-Gt-l----~E~a---~~---qg~---------~~~~~yl~~~k~lGF~~IEIS 72 (240)
..+.+.+.+.++.+++.|+ .++ + |. . +|.. +. +.+ -.-++.++.+++.|++.+-++
T Consensus 90 ~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~l~~e~l~~LkeaG~~~v~~~ 169 (336)
T PRK06256 90 WLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGLLTEEQAERLKEAGVDRYNHN 169 (336)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCcCCHHHHHHHHHhCCCEEecC
Confidence 4566778888888888886 232 2 21 1 1221 11 111 123688899999999988663
Q ss_pred CCc---------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHH
Q 026320 73 VGS---------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAE 143 (240)
Q Consensus 73 dGt---------i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 143 (240)
=-| -.-+.+++.+.|+.+++.|+++.+-+=+ +.. ++.+++++.+.
T Consensus 170 lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~--Glg------------------------Et~ed~~~~~~ 223 (336)
T PRK06256 170 LETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGII--GMG------------------------ESLEDRVEHAF 223 (336)
T ss_pred CccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEE--eCC------------------------CCHHHHHHHHH
Confidence 111 1235688889999999999887653222 211 13566777777
Q ss_pred HHHHcCCcEEEE
Q 026320 144 RCLEAGADMIMI 155 (240)
Q Consensus 144 ~dLeAGA~~Vii 155 (240)
.--+.|.+.|.+
T Consensus 224 ~l~~l~~~~v~i 235 (336)
T PRK06256 224 FLKELDADSIPI 235 (336)
T ss_pred HHHhCCCCEEee
Confidence 666788887765
No 385
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=65.07 E-value=20 Score=31.71 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHcC--CCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 026320 53 AFKEYVEDCKQVG--FDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 103 (240)
Q Consensus 53 ~~~~yl~~~k~lG--F~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~ 103 (240)
.+++-++.++++| +.+++|.++.+. +.. .+.|+.+++.|+++.-.+..
T Consensus 13 ~~~~~l~~~~~~~~~~~~ikvg~~~f~-~~G--~~~i~~l~~~~~~i~~D~Kl 62 (230)
T PRK00230 13 SKEEALAFLDQLDPAVLFVKVGMELFT-AGG--PQFVRELKQRGFKVFLDLKL 62 (230)
T ss_pred CHHHHHHHHHhcCCcccEEEEcHHHHH-hcC--HHHHHHHHhcCCCEEEEeeh
Confidence 4556666666666 556777776654 111 34566666665555444433
No 386
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=65.05 E-value=9.1 Score=30.34 Aligned_cols=41 Identities=17% Similarity=0.345 Sum_probs=32.5
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccc
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 98 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~ 98 (240)
+.+.+.+++|.++|...|=+-.| ..-.++++.++++|+++.
T Consensus 66 ~~~~~~v~~~~~~g~~~v~~~~g------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 66 DKVPEIVDEAAALGVKAVWLQPG------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp HHHHHHHHHHHHHT-SEEEE-TT------S--HHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEcc------hHHHHHHHHHHHcCCEEE
Confidence 47899999999999999999988 445689999999999876
No 387
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=64.76 E-value=38 Score=31.47 Aligned_cols=103 Identities=18% Similarity=0.228 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhCCceec--CCcH--------HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC---hhHHHHHHH
Q 026320 22 FIEEVVKRAHQHDVYVS--TGDW--------AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP---EETLLRYVR 88 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~--~Gtl--------~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~---~~~r~~lI~ 88 (240)
..++-+++||.+||.|- .|.. .+..+.. ..++-.+.+++.|.|++-||-||.-=. +....++++
T Consensus 116 ~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T---~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~ 192 (283)
T PRK07998 116 FTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKT---EPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLK 192 (283)
T ss_pred HHHHHHHHHHHcCCEEEEEeccCCCccccccccccccC---CHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHH
Confidence 46788999999999772 2311 1112222 456667778888999999999995211 111123333
Q ss_pred HHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 89 LVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 89 ~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
..++. .-.| =+..+.|.++ -+++++.+++|+.+|=|-.+
T Consensus 193 ~I~~~--~~vP--LVlHGgSG~~---------------------------~e~~~~ai~~Gi~KiNi~Te 231 (283)
T PRK07998 193 RIAEV--SPVP--LVIHGGSGIP---------------------------PEILRSFVNYKVAKVNIASD 231 (283)
T ss_pred HHHhh--CCCC--EEEeCCCCCC---------------------------HHHHHHHHHcCCcEEEECHH
Confidence 33332 0122 3344444331 25568889999999977653
No 388
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=64.67 E-value=9.3 Score=33.82 Aligned_cols=98 Identities=12% Similarity=0.158 Sum_probs=64.4
Q ss_pred ccccChhHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHH
Q 026320 15 HSLMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKS 92 (240)
Q Consensus 15 s~l~p~~~l~eKi~l~~~~gV~v~~G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~ 92 (240)
..++.+..-.+-++.|+++||.+.|| |.-|+.-.. ++|++.|-+==...-= =..+|+..+.
T Consensus 82 ~FivsP~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~-------------~~Ga~~vKlFPA~~~G----G~~yikal~~ 144 (204)
T TIGR01182 82 QFIVSPGLTPELAKHAQDHGIPIIPGVATPSEIMLAL-------------ELGITALKLFPAEVSG----GVKMLKALAG 144 (204)
T ss_pred CEEECCCCCHHHHHHHHHcCCcEECCCCCHHHHHHHH-------------HCCCCEEEECCchhcC----CHHHHHHHhc
Confidence 33444566788899999999999998 788887554 6899999875432110 0256766655
Q ss_pred cCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecccccc
Q 026320 93 AGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK 162 (240)
Q Consensus 93 ~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d 162 (240)
++|.+-.. .+| + + + .+.+...|+|||.-|-+=+ .+++
T Consensus 145 ----plp~i~~~----ptG--G-------V-----------~----~~N~~~~l~aGa~~vg~Gs-~L~~ 181 (204)
T TIGR01182 145 ----PFPQVRFC----PTG--G-------I-----------N----LANVRDYLAAPNVACGGGS-WLVP 181 (204)
T ss_pred ----cCCCCcEE----ecC--C-------C-----------C----HHHHHHHHhCCCEEEEECh-hhcC
Confidence 45544332 111 1 0 1 4788899999999988744 3554
No 389
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=64.47 E-value=8.6 Score=33.75 Aligned_cols=103 Identities=19% Similarity=0.262 Sum_probs=60.7
Q ss_pred HHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 026320 56 EYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 128 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGt-------i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 128 (240)
.=.+++.++|-|.|.+-=-. -+--.++-.++++.+++.|++++-| ..-.+. ++. +
T Consensus 80 ~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE-~~l~~~-~~~---~------------- 141 (236)
T PF01791_consen 80 AEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILE-PYLRGE-EVA---D------------- 141 (236)
T ss_dssp HHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEE-ECECHH-HBS---S-------------
T ss_pred HHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEE-EecCch-hhc---c-------------
Confidence 34678899999999985433 2222345557777888889999999 553211 110 0
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 026320 129 TEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 129 ~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~ 180 (240)
..+++.+..-++-..++|||+|=+..-+- .....-....+.+++...+
T Consensus 142 ---~~~~~~I~~a~ria~e~GaD~vKt~tg~~-~~~t~~~~~~~~~~~~~~~ 189 (236)
T PF01791_consen 142 ---EKKPDLIARAARIAAELGADFVKTSTGKP-VGATPEDVELMRKAVEAAP 189 (236)
T ss_dssp ---TTHHHHHHHHHHHHHHTT-SEEEEE-SSS-SCSHHHHHHHHHHHHHTHS
T ss_pred ---cccHHHHHHHHHHHHHhCCCEEEecCCcc-ccccHHHHHHHHHHHHhcC
Confidence 00356778888888999999999987622 1111112344555555444
No 390
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=64.39 E-value=10 Score=36.30 Aligned_cols=150 Identities=23% Similarity=0.342 Sum_probs=85.0
Q ss_pred CCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChh-------HHHHHHHHHHHcCCcccceeeee
Q 026320 33 HDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEE-------TLLRYVRLVKSAGLKAKPKFAVM 104 (240)
Q Consensus 33 ~gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~-------~r~~lI~~~~~~G~~v~~E~g~k 104 (240)
.||-+||| ..+| ...+|++.++++||+.|=.| +-+|++ .-.++++.|++.||++...+..+
T Consensus 2 lGiSvY~~~~~~~--------~~~~yi~~a~~~Gf~~iFTS---L~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~ 70 (357)
T PF05913_consen 2 LGISVYPGQSSFE--------ENKAYIEKAAKYGFKRIFTS---LHIPEDDPEDYLERLKELLKLAKELGMEVIADISPK 70 (357)
T ss_dssp EEEEE-CCCS-HH--------HHHHHHHHHHCTTEEEEEEE---E---------HHHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred cEEEEeCCCCCHH--------HHHHHHHHHHHCCCCEEECC---CCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 36677777 3232 56789999999999888776 444443 34578889999999988877764
Q ss_pred cCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc------------c--cccCCCCccHH
Q 026320 105 FNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD------------D--VCKHADSLRAD 170 (240)
Q Consensus 105 ~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar------------g--i~d~~g~~r~d 170 (240)
. ....|.+-+ | .+..-+.|.+-+-++-- | |.-|...+.++
T Consensus 71 ~-l~~lg~~~~------------------d-------l~~~~~lGi~~lRlD~Gf~~~~ia~ls~ng~~I~LNASti~~~ 124 (357)
T PF05913_consen 71 V-LKKLGISYD------------------D-------LSFFKELGIDGLRLDYGFSGEEIAKLSKNGIKIELNASTITEE 124 (357)
T ss_dssp H-HHTTT-BTT------------------B-------THHHHHHT-SEEEESSS-SCHHHHHHTTT-SEEEEETTT--CC
T ss_pred H-HHHcCCCHH------------------H-------HHHHHHcCCCEEEECCCCCHHHHHHHHhCCCEEEEECCCCChH
Confidence 3 222221110 1 12234578888877652 1 34455666778
Q ss_pred HHHHHHhcc-CCCceEEec-----CCch---------hHHHHHHHhCCCcccccCCCC---------chhhhhhh
Q 026320 171 IIAKVIGRL-GLEKTMFEA-----TNPR---------TSEWFIRRYGPKVNLFVDHSQ---------VMDLECLR 221 (240)
Q Consensus 171 ~v~~i~~~~-~~~~lifEA-----P~k~---------qQ~~~I~~fG~~VNLgI~~~d---------Vl~LE~LR 221 (240)
.++.+++.- ..++|+ | |+|. +|..+++++|-.|=-||+-+. +.-||.-|
T Consensus 125 ~l~~L~~~~~~~~~i~--a~HNfYPr~~TGLs~~~f~~~n~~~k~~gi~~~AFI~g~~~~rGPl~~GLPTlE~hR 197 (357)
T PF05913_consen 125 ELDELIKYGANFSNII--ACHNFYPRPYTGLSEEFFIEKNQLLKEYGIKTAAFIPGDENKRGPLYEGLPTLEKHR 197 (357)
T ss_dssp HHHHHCCTT--GGGEE--EE---B-STT-SB-HHHHHHHHHHHHHTT-EEEEEE--SSS-BTTT-S--BSBGGGT
T ss_pred HHHHHHHhcCCHHHeE--EEecccCCCCCCCCHHHHHHHHHHHHHCCCcEEEEecCCCcccCCccCCCCccHHHc
Confidence 888887533 366653 4 4443 488899999976666687663 45566666
No 391
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=64.37 E-value=9 Score=34.32 Aligned_cols=60 Identities=20% Similarity=0.300 Sum_probs=42.9
Q ss_pred ccccChhHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHH
Q 026320 15 HSLMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKS 92 (240)
Q Consensus 15 s~l~p~~~l~eKi~l~~~~gV~v~~G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~ 92 (240)
..++.+..-.+-++.++++||.+.|| |.-|+.-. .++|++.|-+==.. .+. ..+|+.++.
T Consensus 93 ~FiVsP~~~~~v~~~~~~~~i~~iPG~~TpsEi~~A-------------~~~Ga~~vKlFPA~-~~G----~~~ikal~~ 154 (222)
T PRK07114 93 NFIVTPLFNPDIAKVCNRRKVPYSPGCGSLSEIGYA-------------EELGCEIVKLFPGS-VYG----PGFVKAIKG 154 (222)
T ss_pred CEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHH-------------HHCCCCEEEECccc-ccC----HHHHHHHhc
Confidence 34455567788899999999999998 78887644 46999999986533 233 346666654
No 392
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=64.31 E-value=5.3 Score=35.10 Aligned_cols=94 Identities=18% Similarity=0.176 Sum_probs=59.0
Q ss_pred cccChhHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHc
Q 026320 16 SLMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 93 (240)
Q Consensus 16 ~l~p~~~l~eKi~l~~~~gV~v~~G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~ 93 (240)
.++.+..-.+-++.|+++||.+.|| |.-|+.-+ .++|++.|-+==...- -=..+|+..+.
T Consensus 83 FivSP~~~~~v~~~~~~~~i~~iPG~~TptEi~~A-------------~~~G~~~vK~FPA~~~----GG~~~ik~l~~- 144 (196)
T PF01081_consen 83 FIVSPGFDPEVIEYAREYGIPYIPGVMTPTEIMQA-------------LEAGADIVKLFPAGAL----GGPSYIKALRG- 144 (196)
T ss_dssp EEEESS--HHHHHHHHHHTSEEEEEESSHHHHHHH-------------HHTT-SEEEETTTTTT----THHHHHHHHHT-
T ss_pred EEECCCCCHHHHHHHHHcCCcccCCcCCHHHHHHH-------------HHCCCCEEEEecchhc----CcHHHHHHHhc-
Confidence 3444467788899999999999998 78998754 4689999987422210 01367777765
Q ss_pred CCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 94 GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 94 G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
++|++... +..-+ + .+.+...|++|+..|.+=+.
T Consensus 145 ---p~p~~~~~-ptGGV------------~---------------~~N~~~~l~ag~~~vg~Gs~ 178 (196)
T PF01081_consen 145 ---PFPDLPFM-PTGGV------------N---------------PDNLAEYLKAGAVAVGGGSW 178 (196)
T ss_dssp ---TTTT-EEE-EBSS-----------------------------TTTHHHHHTSTTBSEEEESG
T ss_pred ---cCCCCeEE-EcCCC------------C---------------HHHHHHHHhCCCEEEEECch
Confidence 45555442 12111 1 24677889999999977553
No 393
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=64.21 E-value=85 Score=29.78 Aligned_cols=90 Identities=16% Similarity=0.176 Sum_probs=58.5
Q ss_pred cccChhHHHHHHHHHHhCCc-eec--CC-cH----HHHHHH---------------hCCchHHHHHHHHHHcCCCEEEec
Q 026320 16 SLMPKPFIEEVVKRAHQHDV-YVS--TG-DW----AEHLIR---------------NGPSAFKEYVEDCKQVGFDTIELN 72 (240)
Q Consensus 16 ~l~p~~~l~eKi~l~~~~gV-~v~--~G-tl----~E~a~~---------------qg~~~~~~yl~~~k~lGF~~IEIS 72 (240)
.+++.+.+.+.+..+++.|+ .++ +| +. +|+... -++-. .+-++..|+.|++.+-+|
T Consensus 102 ~~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p~i~i~~g~lt-~e~l~~Lk~aGv~r~~i~ 180 (371)
T PRK09240 102 KTLDEEEIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIAREYFSSVSIEVQPLS-EEEYAELVELGLDGVTVY 180 (371)
T ss_pred ccCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCCceeccCCCC-HHHHHHHHHcCCCEEEEE
Confidence 45566667777888888888 332 23 11 222211 12222 444589999999999988
Q ss_pred CCccc------C-------ChhHHHHHHHHHHHcCCcccceeeeecCC
Q 026320 73 VGSLE------I-------PEETLLRYVRLVKSAGLKAKPKFAVMFNK 107 (240)
Q Consensus 73 dGti~------l-------~~~~r~~lI~~~~~~G~~v~~E~g~k~~~ 107 (240)
=-|.+ | +.++|++.|++++++||+ +.-.|.-.+.
T Consensus 181 lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~-~v~~g~i~Gl 227 (371)
T PRK09240 181 QETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIR-KIGLGALLGL 227 (371)
T ss_pred EecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCC-eeceEEEecC
Confidence 77752 4 568999999999999997 2224665443
No 394
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=64.19 E-value=3.4 Score=33.88 Aligned_cols=83 Identities=13% Similarity=0.122 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHhCCceecC---Cc-HHHHH---------HHhCCchHHHHHHHHHHcCCCEEEecCC----cccCChh--
Q 026320 21 PFIEEVVKRAHQHDVYVST---GD-WAEHL---------IRNGPSAFKEYVEDCKQVGFDTIELNVG----SLEIPEE-- 81 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~v~~---Gt-l~E~a---------~~qg~~~~~~yl~~~k~lGF~~IEISdG----ti~l~~~-- 81 (240)
+.+++-.++++++||.+.. .+ +...- -.+..+.+++.++.|+.+|.+.|=+.-| .-..+.+
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~ 106 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEEN 106 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHH
Confidence 4588999999999998442 11 11100 0000127899999999999999999988 2222222
Q ss_pred ------HHHHHHHHHHHcCCcccceeee
Q 026320 82 ------TLLRYVRLVKSAGLKAKPKFAV 103 (240)
Q Consensus 82 ------~r~~lI~~~~~~G~~v~~E~g~ 103 (240)
...++.+.+++.|+++.-|-.-
T Consensus 107 ~~~~~~~l~~l~~~a~~~gv~i~lE~~~ 134 (213)
T PF01261_consen 107 WERLAENLRELAEIAEEYGVRIALENHP 134 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHTSEEEEE-SS
T ss_pred HHHHHHHHHHHHhhhhhhcceEEEeccc
Confidence 3345666777778776666443
No 395
>PLN02540 methylenetetrahydrofolate reductase
Probab=64.14 E-value=57 Score=33.34 Aligned_cols=136 Identities=13% Similarity=0.049 Sum_probs=70.6
Q ss_pred cEEEecCccccccChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh----
Q 026320 6 DGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE---- 80 (240)
Q Consensus 6 D~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~---- 80 (240)
+|+=+-||.-.-+....|+--..+-+.+|+.+++= |- .-.+...+++.|..++++|++.|=+=.|--.-+.
T Consensus 30 ~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTC----rd~n~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~ 105 (565)
T PLN02540 30 LFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTC----TNMPVEKIDHALETIKSNGIQNILALRGDPPHGQDKFV 105 (565)
T ss_pred CEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeee----cCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCcC
Confidence 44455566555444444444444444558866641 21 0112236888999999999998855444333221
Q ss_pred ------hHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEE
Q 026320 81 ------ETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 153 (240)
Q Consensus 81 ------~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~V 153 (240)
+.=.+||+.+++. | ..|++--.....|-.+....+.... ..+++.-++.+++-++|||+++
T Consensus 106 ~~~g~F~~A~dLV~~Ir~~~g----d~f~IgVAGYPEgHpe~~~~~~~~~--------~~~~~~dl~~Lk~KvdAGAdFi 173 (565)
T PLN02540 106 QVEGGFACALDLVKHIRSKYG----DYFGITVAGYPEAHPDVIGGDGLAT--------PEAYQKDLAYLKEKVDAGADLI 173 (565)
T ss_pred CCCCCcccHHHHHHHHHHhCC----CCceEEEeCCCCCCCcccccccccC--------CCChHHHHHHHHHHHHcCCCEE
Confidence 1234566666663 1 0122211111111000000000001 1356788999999999999999
Q ss_pred EEec
Q 026320 154 MIDS 157 (240)
Q Consensus 154 iiEa 157 (240)
|+--
T Consensus 174 ITQl 177 (565)
T PLN02540 174 ITQL 177 (565)
T ss_pred eecc
Confidence 9865
No 396
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=64.05 E-value=1.4e+02 Score=28.90 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCCEEEecCCcc----------cCChhHHHHHHHHHHHcCCccccee
Q 026320 55 KEYVEDCKQVGFDTIELNVGSL----------EIPEETLLRYVRLVKSAGLKAKPKF 101 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGti----------~l~~~~r~~lI~~~~~~G~~v~~E~ 101 (240)
++.++.+++.||+.|.+.=-|. ..+.++-.+.|+.++++|+.+...|
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~ 343 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTF 343 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEE
Confidence 5667777777777766654443 2345556667777777777655544
No 397
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=64.01 E-value=56 Score=27.78 Aligned_cols=116 Identities=15% Similarity=0.160 Sum_probs=58.2
Q ss_pred HHHcCCCEE-Eec-CCccc-----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc-
Q 026320 61 CKQVGFDTI-ELN-VGSLE-----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV- 132 (240)
Q Consensus 61 ~k~lGF~~I-EIS-dGti~-----l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~- 132 (240)
++..++.+| ||. |.... ...+....+++.+++.|+-|....+... .++- .--..++ .+.....++-
T Consensus 81 ~~~~~~~~IGeiGld~~~~~~~~~~q~~~~~~~~~~a~e~~~pv~iH~~~~~--~~~~-~l~~~~~---~~~~~i~H~~~ 154 (251)
T cd01310 81 AANPKVVAIGEIGLDYYRDKSPREVQKEVFRAQLELAKELNLPVVIHSRDAH--EDVL-EILKEYG---PPKRGVFHCFS 154 (251)
T ss_pred hcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCch--HHHH-HHHHhcC---CCCCEEEEccC
Confidence 345578888 887 33222 2224445688999999988887766420 0000 0000000 0000001111
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCch
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPR 192 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifEAP~k~ 192 (240)
.++ +.+++.++.|.+.-+- +.+.+ -+...+.+++..++.+|++||..-|.
T Consensus 155 ~~~----~~~~~~~~~g~~~~~~-~~~~~-----~~~~~~~~~~~~~~~dril~~TD~p~ 204 (251)
T cd01310 155 GSA----EEAKELLDLGFYISIS-GIVTF-----KNANELREVVKEIPLERLLLETDSPY 204 (251)
T ss_pred CCH----HHHHHHHHcCCEEEee-eeecc-----CCCHHHHHHHHhCChHHEEEcccCCC
Confidence 122 2444444556544332 22211 13346788889999999999988653
No 398
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=63.86 E-value=14 Score=35.99 Aligned_cols=52 Identities=15% Similarity=0.283 Sum_probs=38.1
Q ss_pred HHHHHHHHHHcCCCEEEecCCc-------------ccC-----------------ChhHHHHHHHHHHHcCCcccceeee
Q 026320 54 FKEYVEDCKQVGFDTIELNVGS-------------LEI-----------------PEETLLRYVRLVKSAGLKAKPKFAV 103 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGt-------------i~l-----------------~~~~r~~lI~~~~~~G~~v~~E~g~ 103 (240)
+.+-++++++|||++|.||==+ .+. +.++..+||+.++++|++|+-.+-.
T Consensus 24 I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D~V~ 103 (479)
T PRK09441 24 LAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYADVVL 103 (479)
T ss_pred HHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 4455778889999999886411 122 3678999999999999998876655
Q ss_pred ec
Q 026320 104 MF 105 (240)
Q Consensus 104 k~ 105 (240)
.+
T Consensus 104 NH 105 (479)
T PRK09441 104 NH 105 (479)
T ss_pred cc
Confidence 33
No 399
>PRK06852 aldolase; Validated
Probab=63.81 E-value=66 Score=30.31 Aligned_cols=145 Identities=9% Similarity=0.043 Sum_probs=81.5
Q ss_pred EEEecCcccccc----Ch-hHHHHHHHHHHhCC-----------ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 026320 7 GLKFSGGSHSLM----PK-PFIEEVVKRAHQHD-----------VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 70 (240)
Q Consensus 7 ~lKfg~GTs~l~----p~-~~l~eKi~l~~~~g-----------V~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IE 70 (240)
++|+..+|+... ++ ..+---++-+-+.| +.+|+|.=.|.--.+ .+-+-.++|+++|+..|-
T Consensus 96 Ilkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~---~l~~v~~ea~~~GlPll~ 172 (304)
T PRK06852 96 LVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLGSEYESEMLS---EAAQIIYEAHKHGLIAVL 172 (304)
T ss_pred EEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCceEEEEEEecCCHHHHHHHH---HHHHHHHHHHHhCCcEEE
Confidence 578887776664 11 12333344444444 588899877765555 578888999999999885
Q ss_pred --------ecCCcccCChhHHHHHHHHHHHcC---CcccceeeeecCCCCCCCccc-cccccccc---cCC-CCcccc-c
Q 026320 71 --------LNVGSLEIPEETLLRYVRLVKSAG---LKAKPKFAVMFNKSDIPSDRD-RAFGAYVA---RAP-RSTEYV-E 133 (240)
Q Consensus 71 --------ISdGti~l~~~~r~~lI~~~~~~G---~~v~~E~g~k~~~~evg~~~d-~~~~~~~~---~~~-~~~~~~-~ 133 (240)
|+|+. +.+.-.-+.|.+.+.| .|+.+ ..+.. ++| ..|...+. |.. ..+=|. .
T Consensus 173 ~~yprG~~i~~~~---~~~~ia~aaRiaaELGADIVKv~y--~~~~~------~g~~e~f~~vv~~~g~vpVviaGG~k~ 241 (304)
T PRK06852 173 WIYPRGKAVKDEK---DPHLIAGAAGVAACLGADFVKVNY--PKKEG------ANPAELFKEAVLAAGRTKVVCAGGSST 241 (304)
T ss_pred EeeccCcccCCCc---cHHHHHHHHHHHHHHcCCEEEecC--CCcCC------CCCHHHHHHHHHhCCCCcEEEeCCCCC
Confidence 33322 2344455566666655 33322 10000 000 01110000 000 011111 1
Q ss_pred CHHHHHHHHHHHHH-cCCcEEEEeccccccCCCC
Q 026320 134 DVDLLIRRAERCLE-AGADMIMIDSDDVCKHADS 166 (240)
Q Consensus 134 ~~~~~i~~~~~dLe-AGA~~ViiEargi~d~~g~ 166 (240)
+..++.++++..++ +||.=|++ +|-||.....
T Consensus 242 ~~~e~L~~v~~ai~~aGa~Gv~~-GRNIfQ~~~p 274 (304)
T PRK06852 242 DPEEFLKQLYEQIHISGASGNAT-GRNIHQKPLD 274 (304)
T ss_pred CHHHHHHHHHHHHHHcCCceeee-chhhhcCCCc
Confidence 56789999999999 99988877 8888877543
No 400
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=63.77 E-value=1.4e+02 Score=28.87 Aligned_cols=85 Identities=14% Similarity=0.143 Sum_probs=54.0
Q ss_pred EEEecCccccccCh---h----HHHHHHHH-HHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEE--------
Q 026320 7 GLKFSGGSHSLMPK---P----FIEEVVKR-AHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIE-------- 70 (240)
Q Consensus 7 ~lKfg~GTs~l~p~---~----~l~eKi~l-~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IE-------- 70 (240)
++|+..+|+..++. . .+++-+++ |-.-++.+|+|.=.|.--.+ .+-+-.++|+++|+-.|-
T Consensus 129 Ilkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~Gs~~E~~ml~---~l~~i~~ea~~~GlPlv~~~YpRG~~ 205 (348)
T PRK09250 129 ILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATIYFGSEESRRQIE---EISEAFEEAHELGLATVLWSYLRNSA 205 (348)
T ss_pred EEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHHHHHH---HHHHHHHHHHHhCCCEEEEecccCcc
Confidence 57888888774433 1 24444444 33345588999877766666 588899999999999985
Q ss_pred ecCCcc-cCChhHHHHHHHHHHHcC
Q 026320 71 LNVGSL-EIPEETLLRYVRLVKSAG 94 (240)
Q Consensus 71 ISdGti-~l~~~~r~~lI~~~~~~G 94 (240)
+++..- +-..+.-.-..|.+.+.|
T Consensus 206 i~~~~d~~~~~d~Ia~AaRiaaELG 230 (348)
T PRK09250 206 FKKDGDYHTAADLTGQANHLAATIG 230 (348)
T ss_pred cCCcccccccHHHHHHHHHHHHHHc
Confidence 444331 223344455556666655
No 401
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=63.77 E-value=54 Score=30.00 Aligned_cols=136 Identities=20% Similarity=0.263 Sum_probs=80.1
Q ss_pred CCcccEEEecCccccccChhHHHHHHHHHHhCCcee--cCCc---HHHHHHHhCCchHHHHHHHHHHcCCC-EEEecCCc
Q 026320 2 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV--STGD---WAEHLIRNGPSAFKEYVEDCKQVGFD-TIELNVGS 75 (240)
Q Consensus 2 g~yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v--~~Gt---l~E~a~~qg~~~~~~yl~~~k~lGF~-~IEISdGt 75 (240)
.+++|++|+|-++..=+| .|++- -+.|.+| ..|+ +=|..-+ .+.++.-|-. .+=+--|+
T Consensus 108 ~~~vd~~kIga~~~~n~~--LL~~~----a~~gkPV~lk~G~~~s~~e~~~A---------~e~i~~~Gn~~i~L~~rG~ 172 (266)
T PRK13398 108 ADYADMLQIGSRNMQNFE--LLKEV----GKTKKPILLKRGMSATLEEWLYA---------AEYIMSEGNENVVLCERGI 172 (266)
T ss_pred HHhCCEEEECcccccCHH--HHHHH----hcCCCcEEEeCCCCCCHHHHHHH---------HHHHHhcCCCeEEEEECCC
Confidence 367999999977655433 44433 3455544 4563 3332211 2334555553 22233333
Q ss_pred ccC----ChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCC
Q 026320 76 LEI----PEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 150 (240)
Q Consensus 76 i~l----~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA 150 (240)
-+. +..--++.|...++. ++ | +++- +...+| ..+.....+...+.+||
T Consensus 173 ~t~~~Y~~~~vdl~~i~~lk~~~~~---p-V~~D-~sHs~G----------------------~~~~v~~~~~aAva~Ga 225 (266)
T PRK13398 173 RTFETYTRNTLDLAAVAVIKELSHL---P-IIVD-PSHATG----------------------RRELVIPMAKAAIAAGA 225 (266)
T ss_pred CCCCCCCHHHHHHHHHHHHHhccCC---C-EEEe-CCCccc----------------------chhhHHHHHHHHHHcCC
Confidence 112 333455677777764 32 2 4442 122222 12455777888999999
Q ss_pred cEEEEec-----cccccCCCCccHHHHHHHHhcc
Q 026320 151 DMIMIDS-----DDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 151 ~~ViiEa-----rgi~d~~g~~r~d~v~~i~~~~ 179 (240)
+-+|||. +-..|..-.+..+.+.++++.+
T Consensus 226 ~Gl~iE~H~~pd~a~~D~~~sl~p~~l~~l~~~i 259 (266)
T PRK13398 226 DGLMIEVHPEPEKALSDARQTLNFEEMKELVDEL 259 (266)
T ss_pred CEEEEeccCCccccCCchhhcCCHHHHHHHHHHH
Confidence 9999998 3678999999999999998654
No 402
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=63.76 E-value=42 Score=29.48 Aligned_cols=90 Identities=12% Similarity=0.096 Sum_probs=55.0
Q ss_pred CCcccEEEecCccc-cccC-------hhHHHHHHHHHHhCCceecC--CcHH-HHHH--HhCCc----hHHHHHHHHHHc
Q 026320 2 GQFVDGLKFSGGSH-SLMP-------KPFIEEVVKRAHQHDVYVST--GDWA-EHLI--RNGPS----AFKEYVEDCKQV 64 (240)
Q Consensus 2 g~yID~lKfg~GTs-~l~p-------~~~l~eKi~l~~~~gV~v~~--Gtl~-E~a~--~qg~~----~~~~yl~~~k~l 64 (240)
.+.+|++=+ |+.. .+.. .+..++.|..+|+.|++|.. |++- ...+ ...+. -++..++.|++.
T Consensus 25 pds~D~v~l-f~~~~~~~~~~~~~~~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~~~~~~~~~~~~fa~~l~~~v~~y 103 (255)
T cd06542 25 PDSVDMVSL-FAANINLDAATAVQFLLTNKETYIRPLQAKGTKVLLSILGNHLGAGFANNLSDAAAKAYAKAIVDTVDKY 103 (255)
T ss_pred CCcceEEEE-cccccCcccccchhhhhHHHHHHHHHHhhCCCEEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHh
Confidence 467888877 5543 2221 36788999999999998863 5432 1111 11111 255667788899
Q ss_pred CCCEEEecCCccc--------CChhHHHHHHHHHHH
Q 026320 65 GFDTIELNVGSLE--------IPEETLLRYVRLVKS 92 (240)
Q Consensus 65 GF~~IEISdGti~--------l~~~~r~~lI~~~~~ 92 (240)
|||.|-|.--... -..+....+|+.+++
T Consensus 104 glDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~ 139 (255)
T cd06542 104 GLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRK 139 (255)
T ss_pred CCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHH
Confidence 9999988532221 133455677777766
No 403
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=63.69 E-value=58 Score=29.89 Aligned_cols=94 Identities=11% Similarity=0.127 Sum_probs=61.9
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCH
Q 026320 56 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 135 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~ 135 (240)
++.+.-++.|++.+-|=|= +.. -.++|+.+.+. +.+.++-+. . +
T Consensus 42 ~~A~~~~~~Ga~~lHvVDL----g~~-n~~~i~~i~~~-----~~~~v~vGG-------G-------------------I 85 (253)
T TIGR02129 42 YYAKLYKDDGVKGCHVIML----GPN-NDDAAKEALHA-----YPGGLQVGG-------G-------------------I 85 (253)
T ss_pred HHHHHHHHcCCCEEEEEEC----CCC-cHHHHHHHHHh-----CCCCEEEeC-------C-------------------c
Confidence 4555557889999888665 444 44677777662 112222111 0 1
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecC
Q 026320 136 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 189 (240)
Q Consensus 136 ~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifEAP 189 (240)
. .+.+++.|++||++|++=+. .+. +..+.++.++++.+++|.++|+.=-.
T Consensus 86 r--~e~v~~~l~aGa~rVvIGS~-av~-~~~i~~~~~~~i~~~fG~~~IvvsiD 135 (253)
T TIGR02129 86 N--DTNAQEWLDEGASHVIVTSW-LFT-KGKFDLKRLKEIVSLVGKDRLIVDLS 135 (253)
T ss_pred C--HHHHHHHHHcCCCEEEECcH-HHh-CCCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 2 28899999999999999443 222 33567889999999999888887444
No 404
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=63.55 E-value=34 Score=29.96 Aligned_cols=69 Identities=19% Similarity=0.254 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
...+..+.+.+-|++.+||..-+- ...+.|+.+++. ++.. --+|+ |..++
T Consensus 23 ~~~~~~~a~~~gGi~~iEvt~~~~-----~~~~~i~~l~~~-------~~~~---~~iGa------GTV~~--------- 72 (206)
T PRK09140 23 EALAHVGALIEAGFRAIEIPLNSP-----DPFDSIAALVKA-------LGDR---ALIGA------GTVLS--------- 72 (206)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCc-----cHHHHHHHHHHH-------cCCC---cEEeE------EecCC---------
Confidence 556677888999999999985442 344577777763 3210 11110 12222
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
.++++..++|||+.++.=+
T Consensus 73 ------~~~~~~a~~aGA~fivsp~ 91 (206)
T PRK09140 73 ------PEQVDRLADAGGRLIVTPN 91 (206)
T ss_pred ------HHHHHHHHHcCCCEEECCC
Confidence 5678889999999999854
No 405
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=63.23 E-value=46 Score=31.24 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHHcC-CcEEEE
Q 026320 134 DVDLLIRRAERCLEAG-ADMIMI 155 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAG-A~~Vii 155 (240)
|+++.++.++.--++| +|+|-|
T Consensus 226 ~~~e~~~~~~~l~~~G~vd~i~v 248 (343)
T cd04734 226 SPDEALEIAARLAAEGLIDYVNV 248 (343)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEe
Confidence 4678888888888898 899988
No 406
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=63.17 E-value=90 Score=27.77 Aligned_cols=107 Identities=16% Similarity=0.198 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 131 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 131 (240)
+.+.++.++++++||.+|=|+ +.--...-+.++..+.++.+=+|--++..
T Consensus 22 ~~i~~~~~~A~~~~~~avcv~-------p~~v~~a~~~l~~~~v~v~tVigFP~G~~----------------------- 71 (221)
T PRK00507 22 EDIDKLCDEAKEYGFASVCVN-------PSYVKLAAELLKGSDVKVCTVIGFPLGAN----------------------- 71 (221)
T ss_pred HHHHHHHHHHHHhCCeEEEEC-------HHHHHHHHHHhCCCCCeEEEEecccCCCC-----------------------
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCcc--HHHHHHHHhccC--CCceEEecCC
Q 026320 132 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLR--ADIIAKVIGRLG--LEKTMFEATN 190 (240)
Q Consensus 132 ~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r--~d~v~~i~~~~~--~~~lifEAP~ 190 (240)
..+--+.+++..++.||+-|=+=-.=-.-+.|+++ .+.+.++.+..+ +=|+|+|+|.
T Consensus 72 --~~~~K~~e~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~ 132 (221)
T PRK00507 72 --TTAVKAFEAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCL 132 (221)
T ss_pred --hHHHHHHHHHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCc
No 407
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=63.06 E-value=9.4 Score=35.70 Aligned_cols=91 Identities=21% Similarity=0.387 Sum_probs=48.2
Q ss_pred CcccEEEecCccccccChhHHHHHHHHHHhCCceec-----C-C---cHHHHHHHhCCc----hHHHHHHHHHHcCCCEE
Q 026320 3 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS-----T-G---DWAEHLIRNGPS----AFKEYVEDCKQVGFDTI 69 (240)
Q Consensus 3 ~yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~-----~-G---tl~E~a~~qg~~----~~~~yl~~~k~lGF~~I 69 (240)
+|||..=. |.-..+..+. -.-|+.||+|||+|. . | .|++.++.++.+ -+++.++.|+-+|||..
T Consensus 27 ~yiD~fvy-wsh~~i~iP~--~~widaAHrnGV~vLGTiife~~~~~~~~~~ll~~~~~g~~~~A~kLi~ia~~yGFDGw 103 (311)
T PF03644_consen 27 QYIDIFVY-WSHGLITIPP--AGWIDAAHRNGVKVLGTIIFEWGGGAEWCEELLEKDEDGSFPYADKLIEIAKYYGFDGW 103 (311)
T ss_dssp GG-SEEEE-T-TBSSE-----HHHHHHHHHTT--EEEEEEEEEE--HHHHHHHT---TTS--HHHHHHHHHHHHHT--EE
T ss_pred cceeeEee-cccccccCCC--chhHHHHHhcCceEEEEEEecCCchHHHHHHHHcCCcccccHHHHHHHHHHHHcCCCce
Confidence 47776532 5444443211 357899999999885 2 2 388888884422 27899999999999986
Q ss_pred EecCCccc---CChhHHHHHHHHHHHcCCc
Q 026320 70 ELNVGSLE---IPEETLLRYVRLVKSAGLK 96 (240)
Q Consensus 70 EISdGti~---l~~~~r~~lI~~~~~~G~~ 96 (240)
=|+-=+-- -..+.....++.+++..-+
T Consensus 104 ~iN~E~~~~~~~~~~~l~~F~~~l~~~~~~ 133 (311)
T PF03644_consen 104 LINIETPLSGPEDAENLIDFLKYLRKEAHE 133 (311)
T ss_dssp EEEEEESSTTGGGHHHHHHHHHHHHHHHHH
T ss_pred EEEecccCCchhHHHHHHHHHHHHHHHhhc
Confidence 44422211 1234445566666654433
No 408
>PRK10785 maltodextrin glucosidase; Provisional
Probab=63.01 E-value=15 Score=37.22 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc-------------cC-----ChhHHHHHHHHHHHcCCcccceeeee
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSL-------------EI-----PEETLLRYVRLVKSAGLKAKPKFAVM 104 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti-------------~l-----~~~~r~~lI~~~~~~G~~v~~E~g~k 104 (240)
+.+=|+++++||+++|.++==+- .| +.++..+||+.|+++|++|+-.+-..
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~N 249 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFN 249 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 55557899999999999975222 22 23789999999999999988776553
No 409
>PRK12568 glycogen branching enzyme; Provisional
Probab=62.91 E-value=15 Score=38.48 Aligned_cols=103 Identities=20% Similarity=0.214 Sum_probs=60.6
Q ss_pred HHHHHHHHHHcCCCEEEecC----------Ccc-----c-----CChhHHHHHHHHHHHcCCcccceeeeecCCCC-CC-
Q 026320 54 FKEYVEDCKQVGFDTIELNV----------GSL-----E-----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSD-IP- 111 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISd----------Gti-----~-----l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~e-vg- 111 (240)
.++.+.++|+|||++||++= |.- . =+.++..++|+.+.++|++|+-++-...-..+ -+
T Consensus 272 a~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~~~l 351 (730)
T PRK12568 272 AEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVSAHFPDDAHGL 351 (730)
T ss_pred HHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcccccc
Confidence 45568899999999999853 211 1 12568899999999999999988766321110 00
Q ss_pred Cccccccccc--ccc-----CCCCcc-----cccCHHHHHHHHHHHHH-cCCcEEEEec
Q 026320 112 SDRDRAFGAY--VAR-----APRSTE-----YVEDVDLLIRRAERCLE-AGADMIMIDS 157 (240)
Q Consensus 112 ~~~d~~~~~~--~~~-----~~~~~~-----~~~~~~~~i~~~~~dLe-AGA~~ViiEa 157 (240)
..=|.. ..+ ..| ..|... ..+-.+.+++.++..|+ -|.|=.-+.|
T Consensus 352 ~~fdg~-~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DA 409 (730)
T PRK12568 352 AQFDGA-ALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDA 409 (730)
T ss_pred ccCCCc-cccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhCceEEEEcC
Confidence 000000 000 000 113210 00123678888888885 5988888886
No 410
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=62.56 E-value=64 Score=29.97 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 134 DVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
|+++.++.++.--++|+++|-|=++
T Consensus 234 ~~eea~~ia~~Le~~Gvd~iev~~g 258 (338)
T cd04733 234 TEEDALEVVEALEEAGVDLVELSGG 258 (338)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCC
Confidence 5778888888888899999877443
No 411
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=62.15 E-value=30 Score=29.08 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=26.7
Q ss_pred chHHHHHHHHHHcCCCEEEe--cCCcccCChhHHHHHHHHHHH
Q 026320 52 SAFKEYVEDCKQVGFDTIEL--NVGSLEIPEETLLRYVRLVKS 92 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEI--SdGti~l~~~~r~~lI~~~~~ 92 (240)
.++.+-++.+.+.|.|+||+ -||..--....=.+.++.+++
T Consensus 11 ~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~ 53 (210)
T TIGR01163 11 ARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRK 53 (210)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHh
Confidence 37888899999999999999 455441111122345566654
No 412
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=61.97 E-value=87 Score=28.29 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCCcEEEEec
Q 026320 139 IRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 139 i~~~~~dLeAGA~~ViiEa 157 (240)
-++++..+++|||-|++=+
T Consensus 210 ~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 210 PEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred HHHHHHHHHcCCCEEEECH
Confidence 3567778899999998854
No 413
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=61.91 E-value=77 Score=26.50 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=18.4
Q ss_pred HHHHHHHHcCCcEEEEeccccccCC
Q 026320 140 RRAERCLEAGADMIMIDSDDVCKHA 164 (240)
Q Consensus 140 ~~~~~dLeAGA~~ViiEargi~d~~ 164 (240)
+.++..+++||+.|++= +.|++.+
T Consensus 170 ~~i~~~~~~Gad~vvvG-sai~~~~ 193 (202)
T cd04726 170 DTLPEFKKAGADIVIVG-RAITGAA 193 (202)
T ss_pred HHHHHHHhcCCCEEEEe-ehhcCCC
Confidence 56788899999988885 4577643
No 414
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=61.87 E-value=47 Score=28.17 Aligned_cols=22 Identities=23% Similarity=0.096 Sum_probs=16.3
Q ss_pred HHHHHHHHHcCCcEEEEeccccc
Q 026320 139 IRRAERCLEAGADMIMIDSDDVC 161 (240)
Q Consensus 139 i~~~~~dLeAGA~~ViiEargi~ 161 (240)
.+.+...+++||+.|-+=+ .+|
T Consensus 154 ~~n~~~~~~~G~~~v~v~s-~i~ 175 (190)
T cd00452 154 LDNAAEWLAAGVVAVGGGS-LLP 175 (190)
T ss_pred HHHHHHHHHCCCEEEEEch-hcc
Confidence 4788888999999887633 344
No 415
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=61.82 E-value=28 Score=33.43 Aligned_cols=84 Identities=23% Similarity=0.252 Sum_probs=47.5
Q ss_pred HHHHHHcCCCEEEecC--Ccc------c----------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 026320 58 VEDCKQVGFDTIELNV--GSL------E----------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 119 (240)
Q Consensus 58 l~~~k~lGF~~IEISd--Gti------~----------l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~ 119 (240)
-+.|++.|||.|||.- |.+ + =|.+.|.|+...+.++ |.-++|..++ .+
T Consensus 155 A~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~a---Vr~~vg~~~~-----------vg 220 (363)
T COG1902 155 ARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDA---VREAVGADFP-----------VG 220 (363)
T ss_pred HHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHH---HHHHhCCCce-----------EE
Confidence 4567889999999964 333 1 1246666665554442 1113333221 11
Q ss_pred cccccCCCCcccccCHHHHHHHHHHHHHcC-CcEEEE
Q 026320 120 AYVARAPRSTEYVEDVDLLIRRAERCLEAG-ADMIMI 155 (240)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~i~~~~~dLeAG-A~~Vii 155 (240)
--++|.+|...+--|+++.++.++.--++| .+++=+
T Consensus 221 ~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~v 257 (363)
T COG1902 221 VRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHV 257 (363)
T ss_pred EEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEe
Confidence 223444442222346788899999888999 476644
No 416
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=61.81 E-value=46 Score=29.19 Aligned_cols=67 Identities=21% Similarity=0.404 Sum_probs=44.3
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHH
Q 026320 61 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 140 (240)
Q Consensus 61 ~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~ 140 (240)
+...|.++|.|. +..+.+...++++.+++.|-+++-=++- ... + | +.+++.+
T Consensus 88 ~~~~~~d~vDiE---l~~~~~~~~~l~~~~~~~~~kvI~S~H~---f~~-------------t---p------~~~~l~~ 139 (228)
T TIGR01093 88 ADSPGPDFVDIE---LFLPDDAVKELINIAKKGGTKIIMSYHD---FQK-------------T---P------SWEEIVE 139 (228)
T ss_pred HHhCCCCEEEEE---ccCCHHHHHHHHHHHHHCCCEEEEeccC---CCC-------------C---C------CHHHHHH
Confidence 366788988876 3446677778888888877776543332 111 1 1 3467788
Q ss_pred HHHHHHHcCCcEEEE
Q 026320 141 RAERCLEAGADMIMI 155 (240)
Q Consensus 141 ~~~~dLeAGA~~Vii 155 (240)
..++..+.|||.|=+
T Consensus 140 ~~~~~~~~gaDivKi 154 (228)
T TIGR01093 140 RLEKALSYGADIVKI 154 (228)
T ss_pred HHHHHHHhCCCEEEE
Confidence 888888999886633
No 417
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=61.73 E-value=1.4e+02 Score=27.77 Aligned_cols=178 Identities=16% Similarity=0.279 Sum_probs=105.2
Q ss_pred EecCccccccChhHHHHHHHHHHhCCceec----CCc--H---HHH------HHHhC-----C-------chHHHHHHHH
Q 026320 9 KFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGD--W---AEH------LIRNG-----P-------SAFKEYVEDC 61 (240)
Q Consensus 9 Kfg~GTs~l~p~~~l~eKi~l~~~~gV~v~----~Gt--l---~E~------a~~qg-----~-------~~~~~yl~~~ 61 (240)
+++-|.+-+++-+.++.-++-+.+.+-++- +|+ + ++. .+.+. | ..+ +.+..|
T Consensus 17 ~yav~AfN~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~lHLDH~~~-~~i~~a 95 (293)
T PRK07315 17 GYAVGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVAIHLDHGHY-EDALEC 95 (293)
T ss_pred CceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEEEECCCCCH-HHHHHH
Confidence 356677788888888888888888776443 221 1 121 01110 0 112 367888
Q ss_pred HHcCCCEEEecCCcccCChhHHHHH----HHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHH
Q 026320 62 KQVGFDTIELNVGSLEIPEETLLRY----VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 137 (240)
Q Consensus 62 k~lGF~~IEISdGti~l~~~~r~~l----I~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 137 (240)
-+.||+.|=+..-. +|.++..+. .+.++..|..+--|+|.-.+ .+|...+... -.||++
T Consensus 96 i~~GftSVm~d~S~--l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g------~ed~~~g~s~---------~t~pee 158 (293)
T PRK07315 96 IEVGYTSIMFDGSH--LPVEENLKLAKEVVEKAHAKGISVEAEVGTIGG------EEDGIIGKGE---------LAPIED 158 (293)
T ss_pred HHcCCCEEEEcCCC--CCHHHHHHHHHHHHHHHHHcCCEEEEecCcccC------cCccccCccC---------CCCHHH
Confidence 89999999997665 555665554 44555688888888885321 1121111100 125555
Q ss_pred HHHHHHHHHHcCCcEEEEe---ccccccCC-CCccHHHHHHHHhccC-CCceEEecC-CchhHHHHHHHhC-CCcccc
Q 026320 138 LIRRAERCLEAGADMIMID---SDDVCKHA-DSLRADIIAKVIGRLG-LEKTMFEAT-NPRTSEWFIRRYG-PKVNLF 208 (240)
Q Consensus 138 ~i~~~~~dLeAGA~~ViiE---argi~d~~-g~~r~d~v~~i~~~~~-~~~lifEAP-~k~qQ~~~I~~fG-~~VNLg 208 (240)
. +++.+.|+|++=+= .-|+|... -.++.+.+.+|-+.++ +--++-=.. -+..+.--+.+.| ..||.+
T Consensus 159 a----~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv~ 232 (293)
T PRK07315 159 A----KAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLGVAKVNVN 232 (293)
T ss_pred H----HHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCCCCCHHHHHHHHHcCCCEEEEc
Confidence 4 44457899998776 23888763 5699999999998773 333443331 3334444344445 456765
No 418
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=61.72 E-value=28 Score=32.23 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccC--CCceEEecC
Q 026320 139 IRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG--LEKTMFEAT 189 (240)
Q Consensus 139 i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~--~~~lifEAP 189 (240)
.++++..+++|||.||.+ |+..+.+.+.++.+. -.+++.||.
T Consensus 198 leea~ea~~~GaDiI~lD---------n~~~e~l~~~v~~l~~~~~~~~leas 241 (277)
T TIGR01334 198 IEQALTVLQASPDILQLD---------KFTPQQLHHLHERLKFFDHIPTLAAA 241 (277)
T ss_pred HHHHHHHHHcCcCEEEEC---------CCCHHHHHHHHHHHhccCCCEEEEEE
Confidence 688888999999999997 677888888887763 446677776
No 419
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=61.49 E-value=49 Score=28.26 Aligned_cols=82 Identities=15% Similarity=0.229 Sum_probs=52.9
Q ss_pred EEEecCccccccChhHHHHHHHHHHhCCcee----cC-CcHHHHHHHhCCchHHHHHHHHHHcCCC-----EEEecCCcc
Q 026320 7 GLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV----ST-GDWAEHLIRNGPSAFKEYVEDCKQVGFD-----TIELNVGSL 76 (240)
Q Consensus 7 ~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v----~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~-----~IEISdGti 76 (240)
++|.+-||..+.| ...+-++-|+++|+++ |. .+=-+-| +. ..+-|++.++..|.. ++.+-+.+.
T Consensus 30 iikateG~~~~D~--~~~~n~~~A~~aGl~vG~Yhf~~~~~~~~a--~~--eA~~f~~~~~~~~~~~~~~~~lD~E~~~~ 103 (192)
T cd06522 30 IVKLTEGTTYRNP--YAASQIANAKAAGLKVSAYHYAHYTSAADA--QA--EARYFANTAKSLGLSKNTVMVADMEDSSS 103 (192)
T ss_pred EEEEcCCCCccCh--HHHHHHHHHHHCCCeeEEEEEEecCChHHH--HH--HHHHHHHHHHHcCCCCCCceEEEeecCCC
Confidence 7999999999988 8999999999999943 21 1111222 22 467788889887754 334333222
Q ss_pred --cCChhHHHHHHHHHHHcCC
Q 026320 77 --EIPEETLLRYVRLVKSAGL 95 (240)
Q Consensus 77 --~l~~~~r~~lI~~~~~~G~ 95 (240)
.+ .+.-..++++++++|.
T Consensus 104 ~~~~-~~~~~~F~~~v~~~g~ 123 (192)
T cd06522 104 SGNA-TANVNAFWQTMKAAGY 123 (192)
T ss_pred cchH-HHHHHHHHHHHHHcCC
Confidence 11 1223577788888776
No 420
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=61.31 E-value=22 Score=29.34 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCC-CEEEecCCcccCChhHHHHHHHHHHHcCCc
Q 026320 54 FKEYVEDCKQVGF-DTIELNVGSLEIPEETLLRYVRLVKSAGLK 96 (240)
Q Consensus 54 ~~~yl~~~k~lGF-~~IEISdGti~l~~~~r~~lI~~~~~~G~~ 96 (240)
+++.++.+++.|. +..=+=-|.+.+|.+++.+-++++++.|+.
T Consensus 67 ~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~ 110 (128)
T cd02072 67 CKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFD 110 (128)
T ss_pred HHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCC
Confidence 5666777777777 544445566667777777777777776654
No 421
>PLN02858 fructose-bisphosphate aldolase
Probab=61.25 E-value=1.1e+02 Score=34.43 Aligned_cols=108 Identities=18% Similarity=0.235 Sum_probs=70.3
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHH----HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcc
Q 026320 55 KEYVEDCKQVGFDTIELNVGSLEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 130 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGti~l~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~ 130 (240)
.+.+..|-+.||+-|=|.--.+ |.++= ++++++|+..|.-|--|+|.--+ .|-+...+. ...
T Consensus 1182 ~~~i~~ai~~Gf~SVM~DgS~l--~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g-~e~~~~~~~-~~~---------- 1247 (1378)
T PLN02858 1182 KHELLEALELGFDSVMVDGSHL--SFTENISYTKSISSLAHSKGLMVEAELGRLSG-TEDGLTVEE-YEA---------- 1247 (1378)
T ss_pred HHHHHHHHHhCCCEEEEeCCCC--CHHHHHHHHHHHHHHHHHcCCEEEEEecccCC-ccCCccccc-ccc----------
Confidence 3667788889999999875554 44443 36778888899999999998421 111100000 000
Q ss_pred cccCHHHHHHHHHHHHHcCCcEEEEecc---ccccC-CCCccHHHHHHHHhcc
Q 026320 131 YVEDVDLLIRRAERCLEAGADMIMIDSD---DVCKH-ADSLRADIIAKVIGRL 179 (240)
Q Consensus 131 ~~~~~~~~i~~~~~dLeAGA~~ViiEar---gi~d~-~g~~r~d~v~~i~~~~ 179 (240)
.-.||++..+.++ +-|.|..-+==- |+|.. .-+++-|.+.+|-+.+
T Consensus 1248 ~~T~p~~a~~Fv~---~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~ 1297 (1378)
T PLN02858 1248 KLTDVDQAKEFID---ETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALS 1297 (1378)
T ss_pred CCCCHHHHHHHHH---hcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHh
Confidence 1126655555554 258888766542 89986 5789999999999887
No 422
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=61.17 E-value=32 Score=32.02 Aligned_cols=74 Identities=20% Similarity=0.311 Sum_probs=50.7
Q ss_pred CCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHH-cCCc
Q 026320 73 VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLE-AGAD 151 (240)
Q Consensus 73 dGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLe-AGA~ 151 (240)
++|+.++-++....-+.+++ |.++..- --|=.|++|. .++++.++.+-+-+. +||+
T Consensus 53 ~sTl~Vsl~~mi~ht~aV~R---------ga~~~~v----v~DmPF~sy~----------~s~~~a~~nA~r~~ke~gA~ 109 (268)
T COG0413 53 DSTLPVTLEDMIYHTKAVRR---------GAPNAFV----VADLPFGSYE----------VSPEQALKNAARLMKEAGAD 109 (268)
T ss_pred CCcceecHHHHHHHHHHHHh---------cCCCeeE----EeCCCCcccC----------CCHHHHHHHHHHHHHHhCCC
Confidence 57899999999888887776 3322210 0111243332 268999999999999 9999
Q ss_pred EEEEeccccccCCCCccHHHHHHHH
Q 026320 152 MIMIDSDDVCKHADSLRADIIAKVI 176 (240)
Q Consensus 152 ~ViiEargi~d~~g~~r~d~v~~i~ 176 (240)
.|=+|+ |.+..+.++.+.
T Consensus 110 aVKlEG-------G~~~~~~i~~L~ 127 (268)
T COG0413 110 AVKLEG-------GEEMAETIKRLT 127 (268)
T ss_pred EEEEcC-------CHHHHHHHHHHH
Confidence 999998 355555555555
No 423
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=61.13 E-value=47 Score=30.94 Aligned_cols=50 Identities=12% Similarity=0.127 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHhC-CceecC--CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC
Q 026320 21 PFIEEVVKRAHQH-DVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI 78 (240)
Q Consensus 21 ~~l~eKi~l~~~~-gV~v~~--Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l 78 (240)
+.+.+.++-.++. ++++.. ...+ ..+.+..+.+.+.|.++|-+++.+..+
T Consensus 149 ~~~~eiv~~v~~~~~iPv~vKl~p~~--------~~~~~~a~~l~~~Gadgi~~~nt~~~~ 201 (325)
T cd04739 149 QRYLDILRAVKSAVTIPVAVKLSPFF--------SALAHMAKQLDAAGADGLVLFNRFYQP 201 (325)
T ss_pred HHHHHHHHHHHhccCCCEEEEcCCCc--------cCHHHHHHHHHHcCCCeEEEEcCcCCC
Confidence 4466666666654 454442 2111 257788888999999999999987444
No 424
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=61.10 E-value=25 Score=31.59 Aligned_cols=65 Identities=25% Similarity=0.319 Sum_probs=42.2
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCH
Q 026320 56 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 135 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~ 135 (240)
+.+..++++|++.+=.+...+.+. .+++++++++|+.|.+ .++- + .|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~l~~~----~~~v~~~~~~Gl~v~v-WTv~-----~----------------------n~- 262 (282)
T cd08605 216 AAIQVALEGGLQGIVSEVKVLLRN----PTAVSLVKASGLELGT-YGKL-----N----------------------ND- 262 (282)
T ss_pred HHHHHHHHcCCceEEecHHHhhcC----cHHHHHHHHcCcEEEE-eCCC-----C----------------------CC-
Confidence 445677788888765554332222 2689999999888655 3330 0 01
Q ss_pred HHHHHHHHHHHHcCCcEEEEe
Q 026320 136 DLLIRRAERCLEAGADMIMID 156 (240)
Q Consensus 136 ~~~i~~~~~dLeAGA~~ViiE 156 (240)
.+.+++.++.|++-||..
T Consensus 263 ---~~~~~~l~~~GVdgIiTD 280 (282)
T cd08605 263 ---AEAVERQADLGVDGVIVD 280 (282)
T ss_pred ---HHHHHHHHHcCCCEEEeC
Confidence 356788899999999864
No 425
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=60.96 E-value=96 Score=25.74 Aligned_cols=33 Identities=18% Similarity=0.494 Sum_probs=19.2
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceec
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS 38 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~ 38 (240)
++..+-|.+|-..+.|+ +.+-++.+++.|+.++
T Consensus 62 ~~~~i~~sGGEPll~~~--l~~li~~~~~~g~~v~ 94 (191)
T TIGR02495 62 LIDGVVITGGEPTLQAG--LPDFLRKVRELGFEVK 94 (191)
T ss_pred CCCeEEEECCcccCcHh--HHHHHHHHHHCCCeEE
Confidence 34556666666655552 6666666666665443
No 426
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=60.93 E-value=26 Score=33.31 Aligned_cols=137 Identities=19% Similarity=0.159 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHcCCCEEEe------cC-CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccC
Q 026320 53 AFKEYVEDCKQVGFDTIEL------NV-GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 125 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEI------Sd-Gti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 125 (240)
...+.++..|+.|+++|-+ .+ |.-+ .+.=.++.+++|++||++.--|+-.+-..+-| +-..|.
T Consensus 25 ~~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~--~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg--------~Q~~P~ 94 (332)
T PF07745_consen 25 QEKDLFQILKDHGVNAVRLRVWVNPYDGGYND--LEDVIALAKRAKAAGMKVLLDFHYSDFWADPG--------KQNKPA 94 (332)
T ss_dssp SB--HHHHHHHTT--EEEEEE-SS-TTTTTTS--HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTT--------B-B--T
T ss_pred CCCCHHHHHHhcCCCeEEEEeccCCcccccCC--HHHHHHHHHHHHHCCCeEEEeecccCCCCCCC--------CCCCCc
Confidence 5578899999999999987 23 5544 44556799999999999999999866554332 223578
Q ss_pred CCCcccccCHHHHHHH--------HHHHHHcCCcEEEEec--c---ccccCCCC-ccHHHHHHHH-------h-ccCCCc
Q 026320 126 PRSTEYVEDVDLLIRR--------AERCLEAGADMIMIDS--D---DVCKHADS-LRADIIAKVI-------G-RLGLEK 183 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~--------~~~dLeAGA~~ViiEa--r---gi~d~~g~-~r~d~v~~i~-------~-~~~~~~ 183 (240)
.|... +.+++.+. +...-++|+.-=||.= + |++-..|+ -..+-+.+++ + .-+--+
T Consensus 95 aW~~~---~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~k 171 (332)
T PF07745_consen 95 AWANL---SFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIK 171 (332)
T ss_dssp TCTSS---SHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSE
T ss_pred cCCCC---CHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCc
Confidence 89744 55555533 3455678886555543 2 76665554 2333334443 2 233566
Q ss_pred eEEecCCch---hHHHHHHHhC
Q 026320 184 TMFEATNPR---TSEWFIRRYG 202 (240)
Q Consensus 184 lifEAP~k~---qQ~~~I~~fG 202 (240)
+|.=-.++. .+.||...+-
T Consensus 172 V~lH~~~~~~~~~~~~~f~~l~ 193 (332)
T PF07745_consen 172 VMLHLANGGDNDLYRWFFDNLK 193 (332)
T ss_dssp EEEEES-TTSHHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHHH
Confidence 776544443 4577776653
No 427
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=60.81 E-value=1e+02 Score=28.91 Aligned_cols=114 Identities=13% Similarity=0.156 Sum_probs=72.6
Q ss_pred cEEEecCccccccChhHHHHHHHHHHhC----CceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec--CCcc
Q 026320 6 DGLKFSGGSHSLMPKPFIEEVVKRAHQH----DVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN--VGSL 76 (240)
Q Consensus 6 D~lKfg~GTs~l~p~~~l~eKi~l~~~~----gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS--dGti 76 (240)
.-+-|.+|--.+.+.+.|.+-++.+++. +|.+.+ |++-.. --++.++..++.|+..+=+| ++.-
T Consensus 161 ~eV~lsGGDPLl~~d~~L~~ll~~L~~i~~~~~IRi~tr~~~~~P~r-------it~el~~~L~~~~~~~~~vsh~nh~~ 233 (331)
T TIGR00238 161 IEILISGGDPLMAKDHELEWLLKRLEEIPHLVRLRIGTRLPVVIPQR-------ITDELCELLASFELQLMLVTHINHCN 233 (331)
T ss_pred CEEEEECCccccCCHHHHHHHHHHHHhcCCccEEEeecCCCccCchh-------cCHHHHHHHHhcCCcEEEEccCCChH
Confidence 3455777777777655677777766663 344432 332111 13467777888899988888 5555
Q ss_pred cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCc
Q 026320 77 EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 151 (240)
Q Consensus 77 ~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~ 151 (240)
+++++ -.+.|++++++|+.+.....+-.+ + . ++++.+.+..+...++|+.
T Consensus 234 Ei~~~-~~~ai~~L~~aGi~v~~qtvLl~g---v--n-------------------D~~~~l~~L~~~l~~~gV~ 283 (331)
T TIGR00238 234 EITEE-FAEAMKKLRTVNVTLLNQSVLLRG---V--N-------------------DRAQILAKLSIALFKVGII 283 (331)
T ss_pred hCCHH-HHHHHHHHHHcCCEEEeecceECC---c--C-------------------CCHHHHHHHHHHHhhcCee
Confidence 66544 458889999999876655555221 1 1 2467777788888888874
No 428
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=60.55 E-value=17 Score=36.26 Aligned_cols=51 Identities=24% Similarity=0.197 Sum_probs=37.6
Q ss_pred HHHHHHHHHHcCCCEEEecC---------Ccc-----cC-----ChhHHHHHHHHHHHcCCcccceeeee
Q 026320 54 FKEYVEDCKQVGFDTIELNV---------GSL-----EI-----PEETLLRYVRLVKSAGLKAKPKFAVM 104 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISd---------Gti-----~l-----~~~~r~~lI~~~~~~G~~v~~E~g~k 104 (240)
+.+-++++++|||++|.++- |.- .+ +.++..++|+.|+++|++|+-.+-..
T Consensus 29 i~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~N 98 (543)
T TIGR02403 29 IIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFN 98 (543)
T ss_pred HHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 44556788899999998753 221 11 23789999999999999999887653
No 429
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=60.02 E-value=66 Score=31.41 Aligned_cols=97 Identities=16% Similarity=0.268 Sum_probs=65.7
Q ss_pred CCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCccHHHHHHHHhccCCCceEEecCCchh----HHHHHHH
Q 026320 127 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRT----SEWFIRR 200 (240)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~v~~i~~~~~~~~lifEAP~k~q----Q~~~I~~ 200 (240)
+......++++++++++...+.|+..|.+=+. +.|.....--.+++.++++.-+..++=|-.++|.. -..++++
T Consensus 177 rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m~~ 256 (449)
T PRK14332 177 RGRERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQSTDFAGLIQMLLDETTIERIRFTSPHPKDFPDHLLSLMAK 256 (449)
T ss_pred cCCcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCCcccHHHHHHHHhcCCCcceEEEECCCcccCCHHHHHHHHh
Confidence 33345568999999999999999999988876 44543322134566666554456677787776543 3445666
Q ss_pred hC---CCcccccCCCCchhhhhhhCc
Q 026320 201 YG---PKVNLFVDHSQVMDLECLRGR 223 (240)
Q Consensus 201 fG---~~VNLgI~~~dVl~LE~LR~~ 223 (240)
.| +.++|||.+..==-|..++.+
T Consensus 257 ~~~~~~~l~lgvQSgsd~vLk~m~R~ 282 (449)
T PRK14332 257 NPRFCPNIHLPLQAGNTRVLEEMKRS 282 (449)
T ss_pred CCCccceEEECCCcCCHHHHHhhCCC
Confidence 66 578888888776666677654
No 430
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=59.83 E-value=40 Score=32.26 Aligned_cols=74 Identities=24% Similarity=0.326 Sum_probs=53.7
Q ss_pred HHHcCCCEEEecCC----------cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcc
Q 026320 61 CKQVGFDTIELNVG----------SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 130 (240)
Q Consensus 61 ~k~lGF~~IEISdG----------ti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~ 130 (240)
+.+.|+|+|=|.|- |+.++.++.....+.+++ |.+.+.. --|=.|+.|-
T Consensus 51 ~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~R---------ga~~a~v----VaDmPfgSY~-------- 109 (332)
T PLN02424 51 VDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVAR---------GANRPLL----VGDLPFGSYE-------- 109 (332)
T ss_pred HHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhc---------cCCCCEE----EeCCCCCCCC--------
Confidence 45679999999874 569999999999988877 4443321 1122233322
Q ss_pred cccCHHHHHHHHHHHH-HcCCcEEEEec
Q 026320 131 YVEDVDLLIRRAERCL-EAGADMIMIDS 157 (240)
Q Consensus 131 ~~~~~~~~i~~~~~dL-eAGA~~ViiEa 157 (240)
.++++.++.+.+-+ ++||+.|=+|+
T Consensus 110 --~s~e~av~nA~rl~~eaGa~aVKlEG 135 (332)
T PLN02424 110 --SSTDQAVESAVRMLKEGGMDAVKLEG 135 (332)
T ss_pred --CCHHHHHHHHHHHHHHhCCcEEEECC
Confidence 36899999999996 69999999996
No 431
>PRK09061 D-glutamate deacylase; Validated
Probab=59.80 E-value=38 Score=33.52 Aligned_cols=97 Identities=13% Similarity=0.051 Sum_probs=61.8
Q ss_pred cEEEecCccccccChhHHHHHHHHHHhCCceecC----CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc--cCC
Q 026320 6 DGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST----GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL--EIP 79 (240)
Q Consensus 6 D~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~----Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti--~l~ 79 (240)
+++|.+-+-..-.+.+.|.+-.+.+++||..+.. .++....-.- ..+++.++.+++.|+. +-||-=+. ..+
T Consensus 184 ~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~~~~~~e~--~av~~~i~lA~~~G~r-v~IsHlss~g~~~ 260 (509)
T PRK09061 184 LGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLSNVDPRSSV--DAYQELIAAAAETGAH-MHICHVNSTSLRD 260 (509)
T ss_pred CEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCcccCCchhHH--HHHHHHHHHHHHhCCC-EEEEeeccCCccc
Confidence 4555432211233677799999999999997753 1221100001 1578889999999975 44541111 123
Q ss_pred hhHHHHHHHHHHHcCCcccceeeeec
Q 026320 80 EETLLRYVRLVKSAGLKAKPKFAVMF 105 (240)
Q Consensus 80 ~~~r~~lI~~~~~~G~~v~~E~g~k~ 105 (240)
...-+++|+++++.|..|..|+-.-.
T Consensus 261 ~~~~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 261 IDRCLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 46668999999999999999986543
No 432
>PRK09505 malS alpha-amylase; Reviewed
Probab=59.70 E-value=19 Score=37.38 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc----------------------------cC-----ChhHHHHHHHHHHHcCCcccce
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSL----------------------------EI-----PEETLLRYVRLVKSAGLKAKPK 100 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti----------------------------~l-----~~~~r~~lI~~~~~~G~~v~~E 100 (240)
+.+-|+++++|||++|-||--+- .+ +.++..++|+.++++|++|+-.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 44457788999999999873211 11 3468999999999999998877
Q ss_pred eeeec
Q 026320 101 FAVMF 105 (240)
Q Consensus 101 ~g~k~ 105 (240)
+-..+
T Consensus 312 ~V~NH 316 (683)
T PRK09505 312 VVMNH 316 (683)
T ss_pred ECcCC
Confidence 76643
No 433
>PRK07329 hypothetical protein; Provisional
Probab=59.68 E-value=24 Score=31.39 Aligned_cols=77 Identities=14% Similarity=0.186 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHhCCc--eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh--hHHHHHHHHHHHcCC
Q 026320 20 KPFIEEVVKRAHQHDV--YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE--ETLLRYVRLVKSAGL 95 (240)
Q Consensus 20 ~~~l~eKi~l~~~~gV--~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~--~~r~~lI~~~~~~G~ 95 (240)
++.+++-++.++++|+ .+.++++.-.. ........++.|+++|...|=+++..-...+ ....++++.+++.||
T Consensus 164 ~~~~~~i~~~~~~~~~~lEiNt~~~~~~~---~~~~~~~~l~~~~~~g~~~i~~gSDAH~~~~vg~~~~~a~~~l~~~g~ 240 (246)
T PRK07329 164 EPQLTRIFAKMIDNDLAFELNTKSMYLYG---NEGLYRYAIELYKQLGGKLFSIGSDAHKLEHYRYNFDDAQKLLKEHGI 240 (246)
T ss_pred HHHHHHHHHHHHHcCCeEEEECcccccCC---CCcchHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 3456777788888887 45565552111 1112355688888888766666666554443 244566777777777
Q ss_pred cccc
Q 026320 96 KAKP 99 (240)
Q Consensus 96 ~v~~ 99 (240)
+...
T Consensus 241 ~~~~ 244 (246)
T PRK07329 241 KEIA 244 (246)
T ss_pred ceEE
Confidence 6543
No 434
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=59.67 E-value=80 Score=28.32 Aligned_cols=94 Identities=12% Similarity=0.154 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC-ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEI-PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 131 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l-~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 131 (240)
...+..+...+.|++.+=|-|=.-.. ....-..+|+++.+. +.+-+.-+ + +
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~-----~~~pv~~g-------G----------------G 82 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASE-----CFMPLCYG-------G----------------G 82 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHh-----CCCCEEEC-------C----------------C
Confidence 45566777788999988887654442 334446788888773 11111111 0 1
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCce
Q 026320 132 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT 184 (240)
Q Consensus 132 ~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~l 184 (240)
..+ ++.+++.+++||++|++=+ .++. +++++.++++.++.+++
T Consensus 83 i~s----~~d~~~l~~~G~~~vvigs-~~~~-----~~~~~~~~~~~~~~~~i 125 (258)
T PRK01033 83 IKT----LEQAKKIFSLGVEKVSINT-AALE-----DPDLITEAAERFGSQSV 125 (258)
T ss_pred CCC----HHHHHHHHHCCCCEEEECh-HHhc-----CHHHHHHHHHHhCCCcE
Confidence 112 4567777899999999843 3433 25788888887765554
No 435
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=59.67 E-value=28 Score=30.77 Aligned_cols=76 Identities=14% Similarity=0.150 Sum_probs=52.2
Q ss_pred CchHHHHHHHHHHcCCCE--EEecCCccc--CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCC
Q 026320 51 PSAFKEYVEDCKQVGFDT--IELNVGSLE--IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 126 (240)
Q Consensus 51 ~~~~~~yl~~~k~lGF~~--IEISdGti~--l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 126 (240)
+.++.+.++.+++.|++. +-|-||... ++.. .+.|+..++.++.+.-++..+
T Consensus 18 ~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G--~~~v~~lr~~~~~~~lDvHLm---------------------- 73 (228)
T PTZ00170 18 FSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFG--PPVVKSLRKHLPNTFLDCHLM---------------------- 73 (228)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcC--HHHHHHHHhcCCCCCEEEEEC----------------------
Confidence 347889999999999775 678899873 3333 468888888765544455543
Q ss_pred CCcccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 127 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
+.+|...+ +...++||++|.+=++
T Consensus 74 -----~~~p~~~i---~~~~~~Gad~itvH~e 97 (228)
T PTZ00170 74 -----VSNPEKWV---DDFAKAGASQFTFHIE 97 (228)
T ss_pred -----CCCHHHHH---HHHHHcCCCEEEEecc
Confidence 11345545 5566899999988665
No 436
>PRK15447 putative protease; Provisional
Probab=59.62 E-value=47 Score=30.65 Aligned_cols=44 Identities=14% Similarity=0.222 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc----cCChhHHHHHHHHHHHcCCc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSL----EIPEETLLRYVRLVKSAGLK 96 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti----~l~~~~r~~lI~~~~~~G~~ 96 (240)
+++.|...+.+-|.|+|=+..... .++.++..+.|++++++|-+
T Consensus 16 ~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkk 63 (301)
T PRK15447 16 TVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKE 63 (301)
T ss_pred CHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCE
Confidence 899999999999999999986543 48999999999999998755
No 437
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=59.50 E-value=71 Score=29.64 Aligned_cols=99 Identities=21% Similarity=0.340 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhCCceecC--CcH--HHH--------HHHhCCchHHHHHHHHHHcCCCEEEecCCcc--------cCChh
Q 026320 22 FIEEVVKRAHQHDVYVST--GDW--AEH--------LIRNGPSAFKEYVEDCKQVGFDTIELNVGSL--------EIPEE 81 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~--Gtl--~E~--------a~~qg~~~~~~yl~~~k~lGF~~IEISdGti--------~l~~~ 81 (240)
.-++-+++||.+||-|-. |.. -|- .+.. ..++-.+.+++-|.|++=||-||. .|+.+
T Consensus 116 ~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T---~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~ 192 (284)
T PRK12737 116 IVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYT---NPDAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFE 192 (284)
T ss_pred HHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCC---CHHHHHHHHHHhCCCEEeeccCccccccCCCCcCCHH
Confidence 457889999999997753 421 111 1122 345666666778999999999996 23333
Q ss_pred HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 82 TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 82 ~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
|++-|+.+.+ .| -|.++.|.++ -+++++.++.|..+|=|-.+
T Consensus 193 -~L~~I~~~~~-----iP--LVlHGgSG~~---------------------------~e~~~kai~~Gi~KiNi~T~ 234 (284)
T PRK12737 193 -RLAEIREKVS-----IP--LVLHGASGVP---------------------------DEDVKKAISLGICKVNVATE 234 (284)
T ss_pred -HHHHHHHHhC-----CC--EEEeCCCCCC---------------------------HHHHHHHHHCCCeEEEeCcH
Confidence 3333444332 23 2566655442 36677789999999977664
No 438
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=59.45 E-value=45 Score=29.57 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHHhCCceecC---Cc-----HH---HHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc---CCh-----
Q 026320 20 KPFIEEVVKRAHQHDVYVST---GD-----WA---EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE---IPE----- 80 (240)
Q Consensus 20 ~~~l~eKi~l~~~~gV~v~~---Gt-----l~---E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~---l~~----- 80 (240)
...+.+--+++.++|+.++. +. |. +....+.-+.+++.++.|+.+|.+.|=+..+... .+.
T Consensus 51 ~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~ 130 (279)
T TIGR00542 51 REQRLALVNAIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRR 130 (279)
T ss_pred HHHHHHHHHHHHHcCCCceeeecCCCccCcCCCcCHHHHHHHHHHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHH
Confidence 55678888899999998763 21 11 1111122225889999999999999988654321 122
Q ss_pred --hHHHHHHHHHHHcCCccccee
Q 026320 81 --ETLLRYVRLVKSAGLKAKPKF 101 (240)
Q Consensus 81 --~~r~~lI~~~~~~G~~v~~E~ 101 (240)
+...++.+.|++.|.++.-|.
T Consensus 131 ~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 131 FREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHHcCCEEEEee
Confidence 233456678888888877774
No 439
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=59.39 E-value=84 Score=29.16 Aligned_cols=103 Identities=21% Similarity=0.382 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhCCceecC--CcH---------HH-HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC----ChhHHHH
Q 026320 22 FIEEVVKRAHQHDVYVST--GDW---------AE-HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI----PEETLLR 85 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~--Gtl---------~E-~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l----~~~~r~~ 85 (240)
.-++-++++|.+||.|-. |.. .+ ..+..+| ++-.+.+++-|.|++-||-||.-= .+.-..+
T Consensus 114 ~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~p---eea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~ 190 (282)
T TIGR01858 114 LVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDP---QEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFD 190 (282)
T ss_pred HHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCH---HHHHHHHHHHCcCEEecccCccccCcCCCCccCHH
Confidence 457889999999997653 321 11 1223333 555555678899999999999621 1222333
Q ss_pred HHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 86 YVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 86 lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
+++..++. .. .| =|.++.|.++ -+++++..+.|..+|=|-.+
T Consensus 191 ~L~~I~~~-~~-iP--LVlHGgSG~~---------------------------~e~~~~ai~~Gi~KiNi~T~ 232 (282)
T TIGR01858 191 RLAEIREV-VD-VP--LVLHGASDVP---------------------------DEDVRRTIELGICKVNVATE 232 (282)
T ss_pred HHHHHHHH-hC-CC--eEEecCCCCC---------------------------HHHHHHHHHcCCeEEEeCcH
Confidence 44444441 00 22 2455554332 36678889999999966553
No 440
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=59.16 E-value=21 Score=33.09 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=24.3
Q ss_pred cCChhHHHHHHHHHHHcCCcccceeee
Q 026320 77 EIPEETLLRYVRLVKSAGLKAKPKFAV 103 (240)
Q Consensus 77 ~l~~~~r~~lI~~~~~~G~~v~~E~g~ 103 (240)
..+.++..++++.|+++|..|+||+-.
T Consensus 78 ~YT~~di~eiv~yA~~rgI~vIPEID~ 104 (326)
T cd06564 78 YYTKEEFKELIAYAKDRGVNIIPEIDS 104 (326)
T ss_pred cccHHHHHHHHHHHHHcCCeEeccCCC
Confidence 568899999999999999999999976
No 441
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=59.15 E-value=14 Score=29.61 Aligned_cols=47 Identities=28% Similarity=0.417 Sum_probs=37.4
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 026320 50 GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 99 (240)
Q Consensus 50 g~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~ 99 (240)
|...+++|++.|++.|++.|=|+|= -+...-....+.+++.|+++++
T Consensus 14 g~~~~~e~v~~A~~~Gl~~i~iTDH---~~~~~~~~~~~~~~~~~i~vi~ 60 (175)
T PF02811_consen 14 GKDSPEEYVEQAKEKGLDAIAITDH---NNFAGYPDFYKEAKKKGIKVIP 60 (175)
T ss_dssp SSSSHHHHHHHHHHTTESEEEEEEE---TTTTTHHHHHHHHHHTTSEEEE
T ss_pred hcCCHHHHHHHHHHcCCCEEEEcCC---cccccchHHHHHHHhcCCceEE
Confidence 4458999999999999999999987 2223345677888889999887
No 442
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=59.09 E-value=21 Score=35.79 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCCCEEEecCCc---------ccC----------ChhHHHHHHHHHHHcCCcccceeeee
Q 026320 54 FKEYVEDCKQVGFDTIELNVGS---------LEI----------PEETLLRYVRLVKSAGLKAKPKFAVM 104 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGt---------i~l----------~~~~r~~lI~~~~~~G~~v~~E~g~k 104 (240)
+.+-++++++|||++|.++-=+ -.. +.++..++|+.++++|++|+-.+-..
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~N 104 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFN 104 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4456788899999999985322 111 23678999999999999998777654
No 443
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=58.88 E-value=19 Score=33.48 Aligned_cols=42 Identities=26% Similarity=0.533 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccC--CCceEEecC
Q 026320 139 IRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG--LEKTMFEAT 189 (240)
Q Consensus 139 i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~--~~~lifEAP 189 (240)
.+++.+.+++|||+|+++ ++..+.+.+++..+. ..++.+||.
T Consensus 206 leea~eA~~~GaD~I~LD---------n~~~e~l~~av~~~~~~~~~i~leAs 249 (288)
T PRK07428 206 LEQVQEALEYGADIIMLD---------NMPVDLMQQAVQLIRQQNPRVKIEAS 249 (288)
T ss_pred HHHHHHHHHcCCCEEEEC---------CCCHHHHHHHHHHHHhcCCCeEEEEE
Confidence 677778889999999997 777888888887554 456778876
No 444
>PRK08227 autoinducer 2 aldolase; Validated
Probab=58.71 E-value=1e+02 Score=28.44 Aligned_cols=143 Identities=15% Similarity=0.164 Sum_probs=78.1
Q ss_pred EEEecCccccccCh--hH----HHHHHHH-HHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC
Q 026320 7 GLKFSGGSHSLMPK--PF----IEEVVKR-AHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP 79 (240)
Q Consensus 7 ~lKfg~GTs~l~p~--~~----l~eKi~l-~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~ 79 (240)
++|+..+|+..-++ +. +++-+++ +-.-++.+|+|.-.|.--.+ .+-+-.++|+++|+..+-+.-=--.++
T Consensus 78 il~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~---~l~~v~~ea~~~G~Plla~~prG~~~~ 154 (264)
T PRK08227 78 VLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQVFIGSEYEHQSIK---NIIQLVDAGLRYGMPVMAVTAVGKDMV 154 (264)
T ss_pred EEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHHHHHH---HHHHHHHHHHHhCCcEEEEecCCCCcC
Confidence 57888777665221 11 3444444 33334578889878866555 578888999999999887542111222
Q ss_pred hhHHHHHHHHHHHcCCcccceee---eecCCCCCCCccccccccccc--cCC-CCcccc-cCHHHHHHHHHHHHHcCCcE
Q 026320 80 EETLLRYVRLVKSAGLKAKPKFA---VMFNKSDIPSDRDRAFGAYVA--RAP-RSTEYV-EDVDLLIRRAERCLEAGADM 152 (240)
Q Consensus 80 ~~~r~~lI~~~~~~G~~v~~E~g---~k~~~~evg~~~d~~~~~~~~--~~~-~~~~~~-~~~~~~i~~~~~dLeAGA~~ 152 (240)
++.. +|..+...|. |+| +|-+... ..|...+. |.+ ..+=|. .+.+++++.++..+++||.=
T Consensus 155 ~~~~--~ia~aaRiaa----ELGADiVK~~y~~------~~f~~vv~a~~vPVviaGG~k~~~~~~L~~v~~ai~aGa~G 222 (264)
T PRK08227 155 RDAR--YFSLATRIAA----EMGAQIIKTYYVE------EGFERITAGCPVPIVIAGGKKLPERDALEMCYQAIDEGASG 222 (264)
T ss_pred chHH--HHHHHHHHHH----HHcCCEEecCCCH------HHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCce
Confidence 2222 4444443221 233 2222110 00100000 000 000111 14588999999999999998
Q ss_pred EEEeccccccCCC
Q 026320 153 IMIDSDDVCKHAD 165 (240)
Q Consensus 153 ViiEargi~d~~g 165 (240)
|.+ +|-||....
T Consensus 223 v~~-GRNIfQ~~~ 234 (264)
T PRK08227 223 VDM-GRNIFQSEH 234 (264)
T ss_pred eee-chhhhccCC
Confidence 877 788888743
No 445
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=58.66 E-value=61 Score=30.10 Aligned_cols=77 Identities=31% Similarity=0.382 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc----ccC---Ch-hHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS----LEI---PE-ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 124 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt----i~l---~~-~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~ 124 (240)
.+.++.+.+++.|+++||++=+. ... .. +...++++.+++. .-+| +.+|-. |
T Consensus 115 e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~--~~iP-V~vKl~-----------------p 174 (334)
T PRK07565 115 GWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSA--VSIP-VAVKLS-----------------P 174 (334)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhc--cCCc-EEEEeC-----------------C
Confidence 44567777888899999995432 111 11 2245777777764 1134 444421 1
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 125 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 125 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
+..+..+.++...++||+.|++=.+
T Consensus 175 ---------~~~~~~~~a~~l~~~G~dgI~~~n~ 199 (334)
T PRK07565 175 ---------YFSNLANMAKRLDAAGADGLVLFNR 199 (334)
T ss_pred ---------CchhHHHHHHHHHHcCCCeEEEECC
Confidence 1123456666677999999987555
No 446
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=58.47 E-value=1.5e+02 Score=28.50 Aligned_cols=106 Identities=16% Similarity=0.163 Sum_probs=67.2
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccC
Q 026320 55 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 134 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 134 (240)
.+..+.+.+++++. +..+.-.++|+.+++.+ +.+|-.. +
T Consensus 102 a~aa~~~~e~~~~~---------~~p~l~~~ii~~vr~a~------VtvkiRl--------------------------~ 140 (369)
T TIGR01304 102 AAATRLLQELHAAP---------LKPELLGERIAEVRDSG------VITAVRV--------------------------S 140 (369)
T ss_pred HHHHHHHHHcCCCc---------cChHHHHHHHHHHHhcc------eEEEEec--------------------------C
Confidence 36666777888777 46677778899999976 3343211 1
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecccc---c-cCCCCccHHHHHHHHhccCCCceEE-ecCCchhHHHHHHHhCCCc
Q 026320 135 VDLLIRRAERCLEAGADMIMIDSDDV---C-KHADSLRADIIAKVIGRLGLEKTMF-EATNPRTSEWFIRRYGPKV 205 (240)
Q Consensus 135 ~~~~i~~~~~dLeAGA~~ViiEargi---~-d~~g~~r~d~v~~i~~~~~~~~lif-EAP~k~qQ~~~I~~fG~~V 205 (240)
+....+.++..++|||+.|.+-+|=. | ...++ +..+.+++..++.- +|. -......=..+++ .|++.
T Consensus 141 ~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~--p~~l~~~i~~~~IP-VI~G~V~t~e~A~~~~~-aGaDg 212 (369)
T TIGR01304 141 PQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGE--PLNLKEFIGELDVP-VIAGGVNDYTTALHLMR-TGAAG 212 (369)
T ss_pred CcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCC--HHHHHHHHHHCCCC-EEEeCCCCHHHHHHHHH-cCCCE
Confidence 22346777778899999999998721 2 23343 55677788777653 443 3344444344444 78876
No 447
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=58.46 E-value=21 Score=33.03 Aligned_cols=68 Identities=18% Similarity=0.248 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHHHHHH
Q 026320 22 FIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYVRLVK 91 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti---------~l~~~~r~~lI~~~~ 91 (240)
.+.+-|+.++++|+.+..- |.+- ..+.+.+.+++++++++|++.|-+|-++- -++.++-.++++.+.
T Consensus 150 ~~l~~I~~l~~~G~~v~v~~tv~~---~~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~~a~~~~~~l~~~e~~~~~~~~~ 226 (318)
T TIGR03470 150 RAVEAIREAKARGFRVTTNTTLFN---DTDPEEVAEFFDYLTDLGVDGMTISPGYAYEKAPDQDHFLGRRQTKKLFREVL 226 (318)
T ss_pred HHHHHHHHHHHCCCcEEEEEEEeC---CCCHHHHHHHHHHHHHcCCCEEEEecCcccccccccccccCHHHHHHHHHHHH
Confidence 4667788888888766543 2321 13345788888888888888888876542 244444445555554
Q ss_pred H
Q 026320 92 S 92 (240)
Q Consensus 92 ~ 92 (240)
+
T Consensus 227 ~ 227 (318)
T TIGR03470 227 S 227 (318)
T ss_pred h
Confidence 3
No 448
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=58.12 E-value=20 Score=36.98 Aligned_cols=49 Identities=22% Similarity=0.198 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHcCCCEEEecC-------------Ccc-------cCChhHHHHHHHHHHHcCCccccee
Q 026320 53 AFKEYVEDCKQVGFDTIELNV-------------GSL-------EIPEETLLRYVRLVKSAGLKAKPKF 101 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISd-------------Gti-------~l~~~~r~~lI~~~~~~G~~v~~E~ 101 (240)
-.++-+.+|+++|||+||+.= |+. ==++++..++|..+.++|+-|+=..
T Consensus 166 ~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~ 234 (628)
T COG0296 166 LAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDW 234 (628)
T ss_pred HHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 467788999999999999852 222 1157888999999999999987544
No 449
>PRK06256 biotin synthase; Validated
Probab=57.96 E-value=54 Score=30.15 Aligned_cols=69 Identities=17% Similarity=0.190 Sum_probs=38.1
Q ss_pred HHHHHHHHhCCceecC-C--cHHHHHHHh--CCchHHHH---HHHHHHcCCCEEEecCCcc---cCChhHHHHHHHHHHH
Q 026320 24 EEVVKRAHQHDVYVST-G--DWAEHLIRN--GPSAFKEY---VEDCKQVGFDTIELNVGSL---EIPEETLLRYVRLVKS 92 (240)
Q Consensus 24 ~eKi~l~~~~gV~v~~-G--tl~E~a~~q--g~~~~~~y---l~~~k~lGF~~IEISdGti---~l~~~~r~~lI~~~~~ 92 (240)
++.++.++++|+..+. | | -+-.+.+ .+..++++ ++.+++.|+ +++.|.+ .-+.+++.+.++.+++
T Consensus 152 ~e~l~~LkeaG~~~v~~~lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi---~v~~~~I~GlgEt~ed~~~~~~~l~~ 227 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHNLET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGI---EPCSGGIIGMGESLEDRVEHAFFLKE 227 (336)
T ss_pred HHHHHHHHHhCCCEEecCCcc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCC---eeccCeEEeCCCCHHHHHHHHHHHHh
Confidence 4556677888875443 3 3 2222221 11245544 445556675 4555544 3456777778887777
Q ss_pred cCCc
Q 026320 93 AGLK 96 (240)
Q Consensus 93 ~G~~ 96 (240)
.|..
T Consensus 228 l~~~ 231 (336)
T PRK06256 228 LDAD 231 (336)
T ss_pred CCCC
Confidence 6654
No 450
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=57.88 E-value=1.1e+02 Score=26.69 Aligned_cols=81 Identities=12% Similarity=0.108 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHhCCceecC-Cc--------HH---HHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc--CChhH----
Q 026320 21 PFIEEVVKRAHQHDVYVST-GD--------WA---EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--IPEET---- 82 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~v~~-Gt--------l~---E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~--l~~~~---- 82 (240)
..+++--++++++|+.+.. +. ++ +......-..+++.++.|+.+|.++|=+.-|... -+.++
T Consensus 47 ~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~ 126 (275)
T PRK09856 47 GGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGR 126 (275)
T ss_pred hHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHH
Confidence 3577778899999997753 11 11 1111111126888999999999999988654321 12222
Q ss_pred ----HHHHHHHHHHcCCccccee
Q 026320 83 ----LLRYVRLVKSAGLKAKPKF 101 (240)
Q Consensus 83 ----r~~lI~~~~~~G~~v~~E~ 101 (240)
..++.+.|++.|++..-|-
T Consensus 127 ~~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 127 LAENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHHHHcCCEEEEec
Confidence 3567777888888876664
No 451
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=57.81 E-value=1.3e+02 Score=26.10 Aligned_cols=84 Identities=20% Similarity=0.299 Sum_probs=54.9
Q ss_pred HHHHHHHHHHc---CCCEEEecCCccc-CChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCC
Q 026320 54 FKEYVEDCKQV---GFDTIELNVGSLE-IPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 128 (240)
Q Consensus 54 ~~~yl~~~k~l---GF~~IEISdGti~-l~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 128 (240)
.++.++.++++ |.|+||+=-..+. .+.+...+.+..+++. ++.++.-+--+..+ |..
T Consensus 9 ~~~~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~l~~lr~~~~~piI~T~R~~~eG-----------G~~------- 70 (224)
T PF01487_consen 9 LEELLAELEEAESSGADAVELRLDYLENDSAEDISEQLAELRRSLDLPIIFTVRTKEEG-----------GRF------- 70 (224)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEGGGSTTTSHHHHHHHHHHHHHHCTSEEEEE--BGGGT-----------SSB-------
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeccccccChHHHHHHHHHHHHhCCCCEEEEecccccC-----------CCC-------
Confidence 44444444444 9999999877766 5556666777777664 45555444332111 110
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 129 TEYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 129 ~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
..+.++..+..++.++.|+++|-||..
T Consensus 71 ---~~~~~~~~~ll~~~~~~~~d~iDiE~~ 97 (224)
T PF01487_consen 71 ---QGSEEEYLELLERAIRLGPDYIDIELD 97 (224)
T ss_dssp ---SS-HHHHHHHHHHHHHHTSSEEEEEGG
T ss_pred ---cCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 124689999999999999999999986
No 452
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=57.80 E-value=53 Score=30.50 Aligned_cols=81 Identities=28% Similarity=0.355 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHcC--CCEEEecCCcccC-------ChhHHHHHHHHHHHc-C-C-cccceeeeecCCCCCCCcccccccc
Q 026320 53 AFKEYVEDCKQVG--FDTIELNVGSLEI-------PEETLLRYVRLVKSA-G-L-KAKPKFAVMFNKSDIPSDRDRAFGA 120 (240)
Q Consensus 53 ~~~~yl~~~k~lG--F~~IEISdGti~l-------~~~~r~~lI~~~~~~-G-~-~v~~E~g~k~~~~evg~~~d~~~~~ 120 (240)
..++|.+.+++++ .++||++=++-.. ..+.-.++++.+++. . + +-+| +.+|-.
T Consensus 146 ~~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~P-v~vKl~-------------- 210 (327)
T cd04738 146 AVEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVP-LLVKIA-------------- 210 (327)
T ss_pred cHHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCC-eEEEeC--------------
Confidence 5788988888877 9999998754433 234555777777663 0 0 0022 444421
Q ss_pred ccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 121 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
|. + +.++..+.++...++||+.|.+=.+
T Consensus 211 ---~~-~------~~~~~~~ia~~l~~aGad~I~~~n~ 238 (327)
T cd04738 211 ---PD-L------SDEELEDIADVALEHGVDGIIATNT 238 (327)
T ss_pred ---CC-C------CHHHHHHHHHHHHHcCCcEEEEECC
Confidence 11 1 2356778888888999999988765
No 453
>PRK05402 glycogen branching enzyme; Provisional
Probab=57.67 E-value=21 Score=37.03 Aligned_cols=51 Identities=16% Similarity=0.213 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---------------cC-----ChhHHHHHHHHHHHcCCcccceeee
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSL---------------EI-----PEETLLRYVRLVKSAGLKAKPKFAV 103 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti---------------~l-----~~~~r~~lI~~~~~~G~~v~~E~g~ 103 (240)
-.++.+.++++||+++|+++==+- .+ +.++..++|+.+.++|++|+-.+-.
T Consensus 267 i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~ 337 (726)
T PRK05402 267 LADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVP 337 (726)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 345556889999999999864211 11 2568899999999999999988755
No 454
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=57.62 E-value=57 Score=31.15 Aligned_cols=21 Identities=19% Similarity=0.531 Sum_probs=16.8
Q ss_pred HHHHHHHHcCCCEEEecCCcc
Q 026320 56 EYVEDCKQVGFDTIELNVGSL 76 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti 76 (240)
++.+.+.+.|.|+|+||.|+.
T Consensus 256 ~~~~~l~~~gvD~l~vs~g~~ 276 (382)
T cd02931 256 KAAKILEEAGYDALDVDAGSY 276 (382)
T ss_pred HHHHHHHHhCCCEEEeCCCCC
Confidence 455666677999999999974
No 455
>PRK14706 glycogen branching enzyme; Provisional
Probab=57.54 E-value=19 Score=36.95 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=37.2
Q ss_pred HHHHHHHHHcCCCEEEecCCcc---------------cC-----ChhHHHHHHHHHHHcCCcccceeee
Q 026320 55 KEYVEDCKQVGFDTIELNVGSL---------------EI-----PEETLLRYVRLVKSAGLKAKPKFAV 103 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGti---------------~l-----~~~~r~~lI~~~~~~G~~v~~E~g~ 103 (240)
++.+.++|+||+++||++-=.- .+ +.++..++|+.+.++|++|+-++-.
T Consensus 171 ~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~ 239 (639)
T PRK14706 171 HRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVP 239 (639)
T ss_pred HHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4446788999999999863211 11 2477889999999999999977655
No 456
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=57.44 E-value=99 Score=27.38 Aligned_cols=104 Identities=16% Similarity=0.185 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHH-HHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRL-VKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 131 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~-~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 131 (240)
.++++.++++++||.+|=|+--+ ..+.+. ++..+.++.+=+ -||..
T Consensus 19 ~i~~lc~~A~~~~~~avcv~p~~--------v~~a~~~l~~~~v~v~tVi--gFP~G----------------------- 65 (211)
T TIGR00126 19 DIITLCAQAKTYKFAAVCVNPSY--------VPLAKELLKGTEVRICTVV--GFPLG----------------------- 65 (211)
T ss_pred HHHHHHHHHHhhCCcEEEeCHHH--------HHHHHHHcCCCCCeEEEEe--CCCCC-----------------------
Confidence 68999999999999988775322 222222 223344444432 23321
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEecc-ccccCCCCc--cHHHHHHHHhcc-C-CCceEEecCC
Q 026320 132 VEDVDLLIRRAERCLEAGADMIMIDSD-DVCKHADSL--RADIIAKVIGRL-G-LEKTMFEATN 190 (240)
Q Consensus 132 ~~~~~~~i~~~~~dLeAGA~~ViiEar-gi~d~~g~~--r~d~v~~i~~~~-~-~~~lifEAP~ 190 (240)
..+++--+.+++..+++||+-|-+=-. |-+. .|++ -.+.+.++.+.. + +=|+|+|.+.
T Consensus 66 ~~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~-~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~ 128 (211)
T TIGR00126 66 ASTTDVKLYETKEAIKYGADEVDMVINIGALK-DGNEEVVYDDIRAVVEACAGVLLKVIIETGL 128 (211)
T ss_pred CCcHHHHHHHHHHHHHcCCCEEEeecchHhhh-CCcHHHHHHHHHHHHHHcCCCeEEEEEecCC
Confidence 123567788889999999998765443 2221 2332 244566666544 3 5688999984
No 457
>PLN02389 biotin synthase
Probab=57.43 E-value=1.3e+02 Score=28.87 Aligned_cols=130 Identities=20% Similarity=0.240 Sum_probs=77.6
Q ss_pred cccChhHHHHHHHHHHhCCc-eecCCc-----HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHH
Q 026320 16 SLMPKPFIEEVVKRAHQHDV-YVSTGD-----WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRL 89 (240)
Q Consensus 16 ~l~p~~~l~eKi~l~~~~gV-~v~~Gt-----l~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~ 89 (240)
.+++.+.+.++++.+.+.|+ .++-++ .=|-... . .+-+.++.+|+.|+. |-+|.|. ++. +.+++
T Consensus 114 ~~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~-e--~i~eiir~ik~~~l~-i~~s~G~--l~~----E~l~~ 183 (379)
T PLN02389 114 KLMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNF-N--QILEYVKEIRGMGME-VCCTLGM--LEK----EQAAQ 183 (379)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHH-H--HHHHHHHHHhcCCcE-EEECCCC--CCH----HHHHH
Confidence 35677788889999999999 444331 1111111 1 556667777777865 4577774 333 45677
Q ss_pred HHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccH
Q 026320 90 VKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRA 169 (240)
Q Consensus 90 ~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~ 169 (240)
.+++|+.-.+. ... .+ +..+....+ ..+.+++++.++..-++|- -+.+-+|+.- |+.++
T Consensus 184 LkeAGld~~~~-~Le--Ts------~~~y~~i~~--------~~s~e~rl~ti~~a~~~Gi---~v~sg~IiGl-gEt~e 242 (379)
T PLN02389 184 LKEAGLTAYNH-NLD--TS------REYYPNVIT--------TRSYDDRLETLEAVREAGI---SVCSGGIIGL-GEAEE 242 (379)
T ss_pred HHHcCCCEEEe-eec--CC------hHHhCCcCC--------CCCHHHHHHHHHHHHHcCC---eEeEEEEECC-CCCHH
Confidence 78888886542 221 00 001111111 2367999999999999994 2444566666 77777
Q ss_pred HHHHHHH
Q 026320 170 DIIAKVI 176 (240)
Q Consensus 170 d~v~~i~ 176 (240)
|.++.+.
T Consensus 243 drv~~l~ 249 (379)
T PLN02389 243 DRVGLLH 249 (379)
T ss_pred HHHHHHH
Confidence 7665443
No 458
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=57.15 E-value=74 Score=28.57 Aligned_cols=75 Identities=15% Similarity=0.240 Sum_probs=48.2
Q ss_pred HHHHHHHHcC-CCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccC
Q 026320 56 EYVEDCKQVG-FDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 134 (240)
Q Consensus 56 ~yl~~~k~lG-F~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 134 (240)
++++.+-++| +++|.|.- ..+.+...+++..+++.|-+++-=++- ... +| +
T Consensus 99 ~ll~~~~~~~~~d~vDiEl---~~~~~~~~~l~~~~~~~~~kvI~S~H~---f~~-------------tP---------~ 150 (253)
T PRK02412 99 ALIKAVIKSGLPDYIDVEL---FSGKDVVKEMVAFAHEHGVKVVLSYHD---FEK-------------TP---------P 150 (253)
T ss_pred HHHHHHHhcCCCCEEEEec---cCChHHHHHHHHHHHHcCCEEEEeeCC---CCC-------------Cc---------C
Confidence 3456667788 88888753 446677778888888887776554432 111 12 2
Q ss_pred HHHHHHHHHHHHHcCCcE--EEEecc
Q 026320 135 VDLLIRRAERCLEAGADM--IMIDSD 158 (240)
Q Consensus 135 ~~~~i~~~~~dLeAGA~~--ViiEar 158 (240)
.+++.+..++.-+.|||. |.+-++
T Consensus 151 ~~~l~~~~~~~~~~gaDivKia~~a~ 176 (253)
T PRK02412 151 KEEIVERLRKMESLGADIVKIAVMPQ 176 (253)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCC
Confidence 356778888888889885 444444
No 459
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=57.15 E-value=74 Score=29.05 Aligned_cols=85 Identities=18% Similarity=0.292 Sum_probs=60.2
Q ss_pred ccEEEecCc------cccccChhHHHHHHHHHHhCCc---eecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC
Q 026320 5 VDGLKFSGG------SHSLMPKPFIEEVVKRAHQHDV---YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG 74 (240)
Q Consensus 5 ID~lKfg~G------Ts~l~p~~~l~eKi~l~~~~gV---~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdG 74 (240)
+-++|++.| ..++.| ++.-|+|+++.|+ ++|| ||+--. +.+..--+.|.+.||. +|=
T Consensus 116 ~G~VkISTGp~Ss~~~~~iV~---vetAiaml~dmG~~SiKffPM~Gl~~l------eE~~avA~aca~~g~~-lEP--- 182 (236)
T TIGR03581 116 PGLVNISTGPLSSQGKEAIVP---IETAIAMLKDMGGSSVKFFPMGGLKHL------EEYAAVAKACAKHGFY-LEP--- 182 (236)
T ss_pred cceEEeccCcccccCCCceee---HHHHHHHHHHcCCCeeeEeecCCcccH------HHHHHHHHHHHHcCCc-cCC---
Confidence 357899998 334555 7888999999886 8888 653100 0333445789999995 454
Q ss_pred cccCChhHHHHHHHHHHHcCCc-ccceee
Q 026320 75 SLEIPEETLLRYVRLVKSAGLK-AKPKFA 102 (240)
Q Consensus 75 ti~l~~~~r~~lI~~~~~~G~~-v~~E~g 102 (240)
|--|+.+...++++.+.+.|.+ |+|.+-
T Consensus 183 TGGIdl~Nf~~I~~i~ldaGv~kviPHIY 211 (236)
T TIGR03581 183 TGGIDLDNFEEIVQIALDAGVEKVIPHVY 211 (236)
T ss_pred CCCccHHhHHHHHHHHHHcCCCeeccccc
Confidence 4446777788999999999986 778654
No 460
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=57.07 E-value=1.5e+02 Score=26.79 Aligned_cols=129 Identities=14% Similarity=0.163 Sum_probs=0.0
Q ss_pred CCCc-ccEEEecCccccccChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-
Q 026320 1 MGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE- 77 (240)
Q Consensus 1 ~g~y-ID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~- 77 (240)
+.++ +|++=+.||...-+....+.-=..+.+++|+.+.+= |--- .++..++..+..++++|++.|=+=.|--.
T Consensus 24 l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~----~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~ 99 (272)
T TIGR00676 24 LSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCIG----ATREEIREILREYRELGIRHILALRGDPPK 99 (272)
T ss_pred HhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecC----CCHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q ss_pred -------CChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcC
Q 026320 78 -------IPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 149 (240)
Q Consensus 78 -------l~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAG 149 (240)
-+.+.=.+||+.+++. | ..-+|+ +-+........+.++.++.+++-++||
T Consensus 100 ~~~~~~~~~f~~a~~Li~~i~~~~~---~f~ig~-------------------a~~Peghp~~~~~~~~~~~L~~K~~aG 157 (272)
T TIGR00676 100 GEGTPTPGGFNYASELVEFIRNEFG---DFDIGV-------------------AAYPEKHPEAPNLEEDIENLKRKVDAG 157 (272)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHhcC---CeeEEE-------------------EeCCCCCCCCCCHHHHHHHHHHHHHcC
Q ss_pred CcEEEE
Q 026320 150 ADMIMI 155 (240)
Q Consensus 150 A~~Vii 155 (240)
|+++|+
T Consensus 158 A~f~iT 163 (272)
T TIGR00676 158 ADYAIT 163 (272)
T ss_pred CCeEee
No 461
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=56.97 E-value=13 Score=33.24 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=11.2
Q ss_pred cccccChhHHHHHHHHHHhCCce
Q 026320 14 SHSLMPKPFIEEVVKRAHQHDVY 36 (240)
Q Consensus 14 Ts~l~p~~~l~eKi~l~~~~gV~ 36 (240)
++-+|+++.|++.++++|+||..
T Consensus 160 lFdfm~~e~l~eFvd~Ah~hGL~ 182 (235)
T COG1891 160 LFDFMDEEELEEFVDLAHEHGLE 182 (235)
T ss_pred HHhhhcHHHHHHHHHHHHHcchH
Confidence 33444455555555555555543
No 462
>PRK08323 phenylhydantoinase; Validated
Probab=56.86 E-value=1.1e+02 Score=29.20 Aligned_cols=95 Identities=11% Similarity=0.116 Sum_probs=63.3
Q ss_pred ccEEEecCc--cccccChhHHHHHHHHHHhCCceecC--Cc--HHHHH----HHhCC----------------chHHHHH
Q 026320 5 VDGLKFSGG--SHSLMPKPFIEEVVKRAHQHDVYVST--GD--WAEHL----IRNGP----------------SAFKEYV 58 (240)
Q Consensus 5 ID~lKfg~G--Ts~l~p~~~l~eKi~l~~~~gV~v~~--Gt--l~E~a----~~qg~----------------~~~~~yl 58 (240)
++.+|+..+ ....++.+.|++-++.++++|+.+.. -+ ..+.+ ...|. ..+++-+
T Consensus 142 ~~~ik~~~~~~~~~~~s~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~ 221 (459)
T PRK08323 142 ITSFKLFMAYKGALMLDDDELLRALQRAAELGALPMVHAENGDAIAYLQAKLLAEGKTGPEYHALSRPPEVEGEATNRAI 221 (459)
T ss_pred CCEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCChhhhhccCCHHHHHHHHHHHH
Confidence 466887643 33456777899999999999997653 23 22211 11121 1344557
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeee
Q 026320 59 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 104 (240)
Q Consensus 59 ~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k 104 (240)
+.++.+|.... | .-++..+-.++|+.+++.|..+..|+...
T Consensus 222 ~~a~~~~~~~~-i----~H~s~~~~~~~i~~ak~~g~~vt~e~~p~ 262 (459)
T PRK08323 222 MLAELAGAPLY-I----VHVSCKEALEAIRRARARGQRVFGETCPQ 262 (459)
T ss_pred HHHHHhCCCEE-E----EeCCCHHHHHHHHHHHHCCCeEEEEcCcc
Confidence 88888886554 3 55666777899999999998877677554
No 463
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=56.82 E-value=18 Score=29.58 Aligned_cols=42 Identities=19% Similarity=0.383 Sum_probs=25.5
Q ss_pred HcCCcEEEEeccccc---cCCCCccHHHHHHHHhccCCCceEEec
Q 026320 147 EAGADMIMIDSDDVC---KHADSLRADIIAKVIGRLGLEKTMFEA 188 (240)
Q Consensus 147 eAGA~~ViiEargi~---d~~g~~r~d~v~~i~~~~~~~~lifEA 188 (240)
+|||+.+++-...-+ ..--.-+..-++++++.+..+-+++|=
T Consensus 55 ~aGA~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~Dlvl~eG 99 (140)
T PF03205_consen 55 KAGADVVLVSSDEPIALETQFHQRKSMDLEELLSLLPVDLVLVEG 99 (140)
T ss_dssp HCT-SEEEEECSSEEEEEEECSCCCCCBHHHHHHHCC-SEEEEES
T ss_pred cccceEEEEEcCCceeeeeeccccCCCCHHHHHHhhCCCEEEEec
Confidence 999999999987511 111011222367777777788888884
No 464
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=56.74 E-value=1.1e+02 Score=24.92 Aligned_cols=133 Identities=19% Similarity=0.183 Sum_probs=73.9
Q ss_pred ChhHHHHHHHHHHhCCc-ee-cCCcHHHHHHHh--C-----------------CchHHHHHHHHHHcCCCEEEecCCccc
Q 026320 19 PKPFIEEVVKRAHQHDV-YV-STGDWAEHLIRN--G-----------------PSAFKEYVEDCKQVGFDTIELNVGSLE 77 (240)
Q Consensus 19 p~~~l~eKi~l~~~~gV-~v-~~Gtl~E~a~~q--g-----------------~~~~~~yl~~~k~lGF~~IEISdGti~ 77 (240)
+.+.+++-++.+-++|| -+ .+|.+++.+... + ....-+..+.+++.|.++|.+---.-.
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~ 90 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNPGYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGS 90 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHH
Confidence 45567777777777777 22 235666665432 1 123557788899999999998644432
Q ss_pred CC---hhHHHHHHHHHHHc---CCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCc
Q 026320 78 IP---EETLLRYVRLVKSA---GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 151 (240)
Q Consensus 78 l~---~~~r~~lI~~~~~~---G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~ 151 (240)
.+ .+.-.+.++.+.+. ++.+....-. ... -+++.+.+.++..-++|++
T Consensus 91 ~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p---------------------~~~-----~~~~~~~~~~~~~~~~g~~ 144 (201)
T cd00945 91 LKEGDWEEVLEEIAAVVEAADGGLPLKVILET---------------------RGL-----KTADEIAKAARIAAEAGAD 144 (201)
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCceEEEEEEC---------------------CCC-----CCHHHHHHHHHHHHHhCCC
Confidence 22 45556777777664 4332221111 110 1356666665555678999
Q ss_pred EEEEeccccccCCCCccHHHHHHHHhccC
Q 026320 152 MIMIDSDDVCKHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 152 ~ViiEargi~d~~g~~r~d~v~~i~~~~~ 180 (240)
.|=.- .|-+. +....+.+.++.+.++
T Consensus 145 ~iK~~-~~~~~--~~~~~~~~~~i~~~~~ 170 (201)
T cd00945 145 FIKTS-TGFGG--GGATVEDVKLMKEAVG 170 (201)
T ss_pred EEEeC-CCCCC--CCCCHHHHHHHHHhcc
Confidence 76432 22221 2334555666655443
No 465
>PRK09248 putative hydrolase; Validated
Probab=56.50 E-value=11 Score=33.34 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=8.1
Q ss_pred HHHHHHHHHHcCCCEE
Q 026320 54 FKEYVEDCKQVGFDTI 69 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~I 69 (240)
+++-++.+++.||+.+
T Consensus 203 ~~~~~~~~~~~g~~~~ 218 (246)
T PRK09248 203 FEEALKILDEVGFPEE 218 (246)
T ss_pred HHHHHHHHHHcCCCHH
Confidence 4444555555555544
No 466
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=56.50 E-value=10 Score=30.92 Aligned_cols=64 Identities=11% Similarity=0.107 Sum_probs=50.3
Q ss_pred HHHHhCCc-eec-CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccc
Q 026320 28 KRAHQHDV-YVS-TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 98 (240)
Q Consensus 28 ~l~~~~gV-~v~-~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~ 98 (240)
+.++++|| .+. .|-..+.++.+- ...+.++||+.+=++|.+-+.+.+.....++.++.+|-.|.
T Consensus 105 ~~L~~~gi~~vil~G~~t~~CV~~T-------a~~a~~~g~~v~v~~Da~~~~~~~~h~~~l~~l~~~~~~v~ 170 (174)
T PF00857_consen 105 EILRKRGIDTVILCGVATDVCVLAT-------ARDAFDRGYRVIVVEDACASYSPEAHEAALEELRKRGAEVI 170 (174)
T ss_dssp HHHHHTTESEEEEEEESTTTHHHHH-------HHHHHHTT-EEEEEEEEEEBSSHHHHHHHHHHHHHHTSEEE
T ss_pred ccccccccceEEEcccccCcEEehh-------HHHHHHCCCEEEEEChhhcCCCHHHHHHHHHHHHhCCCEEE
Confidence 45777999 444 477888888774 34457889999999999999999999999999988765554
No 467
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=56.34 E-value=13 Score=34.00 Aligned_cols=50 Identities=26% Similarity=0.385 Sum_probs=36.2
Q ss_pred ccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc
Q 026320 17 LMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL 76 (240)
Q Consensus 17 l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti 76 (240)
.-..+.|+..|+.+|++||.|+. |+ + --.+-++.++++|.++||+-.|..
T Consensus 107 ~~~~~~l~~~i~~L~~~gIrvSL--Fi------D--P~~~qi~~A~~~Gad~VELhTG~y 156 (239)
T PF03740_consen 107 AGNRDRLKPVIKRLKDAGIRVSL--FI------D--PDPEQIEAAKELGADRVELHTGPY 156 (239)
T ss_dssp CGGHHHHHHHHHHHHHTT-EEEE--EE---------S-HHHHHHHHHTT-SEEEEETHHH
T ss_pred hcCHHHHHHHHHHHHhCCCEEEE--Ee------C--CCHHHHHHHHHcCCCEEEEehhHh
Confidence 33457899999999999999984 11 1 113446778999999999999976
No 468
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=56.33 E-value=1.1e+02 Score=31.24 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEec
Q 026320 134 DVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
+.+.-++.+++-++|||+++|+--
T Consensus 476 ~~~~d~~~L~~Ki~aGAdf~iTQ~ 499 (612)
T PRK08645 476 NLDKEVKRLEKKIEAGADYFITQP 499 (612)
T ss_pred ChHHHHHHHHHHHHcCCCEEEecc
Confidence 467778999999999999999865
No 469
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=56.17 E-value=1.4e+02 Score=28.64 Aligned_cols=165 Identities=18% Similarity=0.116 Sum_probs=98.3
Q ss_pred cccccChhHHHHHHHHHHhCC-ceecCCc-HH----------------------HHHHHhCCchHHHHHHHHHHcCCCEE
Q 026320 14 SHSLMPKPFIEEVVKRAHQHD-VYVSTGD-WA----------------------EHLIRNGPSAFKEYVEDCKQVGFDTI 69 (240)
Q Consensus 14 Ts~l~p~~~l~eKi~l~~~~g-V~v~~Gt-l~----------------------E~a~~qg~~~~~~yl~~~k~lGF~~I 69 (240)
...+++.+.+-+.-..+++.| ..+|-|+ |= |++..-| ---++..+.+++.|.+++
T Consensus 80 ~~~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG-~l~~eq~~~L~~aGvd~y 158 (335)
T COG0502 80 ARKLMEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLG-MLTEEQAEKLADAGVDRY 158 (335)
T ss_pred hhhcCCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccC-CCCHHHHHHHHHcChhhe
Confidence 345777777888888888888 4555432 32 2222222 122567778889999988
Q ss_pred EecCCc---------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHH
Q 026320 70 ELNVGS---------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 140 (240)
Q Consensus 70 EISdGt---------i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~ 140 (240)
.-+=-| .+-+-++|.+-++.+++.|++|-+ |.=.+.. ++.+++|+
T Consensus 159 nhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcs--GgI~GlG------------------------Es~eDri~ 212 (335)
T COG0502 159 NHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCS--GGIVGLG------------------------ETVEDRAE 212 (335)
T ss_pred ecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCcccc--ceEecCC------------------------CCHHHHHH
Confidence 773333 367889999999999999999887 4433321 13577788
Q ss_pred HHHHHHHcC-CcEEEEec----ccc-ccCCCCccHHHHHHHH--hc--cCCCceEEecCCch---hHHHHHHHhCCCc
Q 026320 141 RAERCLEAG-ADMIMIDS----DDV-CKHADSLRADIIAKVI--GR--LGLEKTMFEATNPR---TSEWFIRRYGPKV 205 (240)
Q Consensus 141 ~~~~dLeAG-A~~ViiEa----rgi-~d~~g~~r~d~v~~i~--~~--~~~~~lifEAP~k~---qQ~~~I~~fG~~V 205 (240)
.+..-.+-. .+.|=|=. .|- +.+.-.+.....-+++ .+ +|-..|.+=|+... +.+.+.-..|.|.
T Consensus 213 ~l~~L~~l~~pdsVPIn~l~P~~GTPle~~~~~~~~e~lk~IA~~Ri~~P~~~Ir~s~gr~~~~~~~q~~~~~aGans 290 (335)
T COG0502 213 LLLELANLPTPDSVPINFLNPIPGTPLENAKPLDPFEFLKTIAVARIIMPKSMIRLSAGRETMLPELQALAFMAGANS 290 (335)
T ss_pred HHHHHHhCCCCCeeeeeeecCCCCCccccCCCCCHHHHHHHHHHHHHHCCcceeEccCCcccccHHHHHHHHHhccce
Confidence 777776766 88887654 132 4434444443333333 22 44555555444221 2234455556554
No 470
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=55.96 E-value=29 Score=29.85 Aligned_cols=114 Identities=16% Similarity=0.302 Sum_probs=61.0
Q ss_pred ecCccccccChhHHHHHHHHHHhCCceec----CC-----cHHHHHHHhCCchHHHHHHHHHHcCCCEEEec----CCcc
Q 026320 10 FSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TG-----DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN----VGSL 76 (240)
Q Consensus 10 fg~GTs~l~p~~~l~eKi~l~~~~gV~v~----~G-----tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS----dGti 76 (240)
+-.|++.+.+++.+++..+-+.+..|.++ -| +|.+ ..+....++.+.+.+.|++.+=+. +|+.
T Consensus 99 vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~ 174 (234)
T cd04732 99 VIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLE----TSEVSLEELAKRFEELGVKAIIYTDISRDGTL 174 (234)
T ss_pred EEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCee----ecCCCHHHHHHHHHHcCCCEEEEEeecCCCcc
Confidence 34577777777777666665433222222 11 1221 112256677888888888877655 3333
Q ss_pred cCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEE
Q 026320 77 EIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 155 (240)
Q Consensus 77 ~l~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~Vii 155 (240)
.=++ .++|+.+++. ...+...-|+ .++ +.+++.++.||+-||+
T Consensus 175 ~g~~---~~~i~~i~~~~~ipvi~~GGi-----------------------------~~~----~di~~~~~~Ga~gv~v 218 (234)
T cd04732 175 SGPN---FELYKELAAATGIPVIASGGV-----------------------------SSL----DDIKALKELGVAGVIV 218 (234)
T ss_pred CCCC---HHHHHHHHHhcCCCEEEecCC-----------------------------CCH----HHHHHHHHCCCCEEEE
Confidence 2222 4666666653 2222222222 133 3344556679999999
Q ss_pred eccccccCC
Q 026320 156 DSDDVCKHA 164 (240)
Q Consensus 156 Eargi~d~~ 164 (240)
++.++.+.
T Consensus 219 -g~~~~~~~ 226 (234)
T cd04732 219 -GKALYEGK 226 (234)
T ss_pred -eHHHHcCC
Confidence 66665543
No 471
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=55.91 E-value=17 Score=32.27 Aligned_cols=93 Identities=23% Similarity=0.219 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC--ChhHHHHHHHHHHHcCCcccc
Q 026320 22 FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI--PEETLLRYVRLVKSAGLKAKP 99 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l--~~~~r~~lI~~~~~~G~~v~~ 99 (240)
.+++-.+.++ |+++-- -+|..+..+ +.+....+.|.+.|-|.|-.|.|+..- +.++ .++++++...
T Consensus 107 ei~~i~~~~~--g~~lKv--IlE~~~L~~-~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~d-v~~m~~~v~~------ 174 (211)
T TIGR00126 107 DIRAVVEACA--GVLLKV--IIETGLLTD-EEIRKACEICIDAGADFVKTSTGFGAGGATVED-VRLMRNTVGD------ 174 (211)
T ss_pred HHHHHHHHcC--CCeEEE--EEecCCCCH-HHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHH-HHHHHHHhcc------
Confidence 3555555554 542221 234443322 255677888999999999999998632 2222 2444444332
Q ss_pred eeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEE
Q 026320 100 KFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 153 (240)
Q Consensus 100 E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~V 153 (240)
.+++|-.+ + ..| .+++.+.++|||+.+
T Consensus 175 ~v~IKaaG------G-----------------irt----~~~a~~~i~aGa~ri 201 (211)
T TIGR00126 175 TIGVKASG------G-----------------VRT----AEDAIAMIEAGASRI 201 (211)
T ss_pred CCeEEEeC------C-----------------CCC----HHHHHHHHHHhhHHh
Confidence 46776432 1 112 577888889999865
No 472
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=55.90 E-value=93 Score=26.81 Aligned_cols=96 Identities=14% Similarity=0.186 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC-ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEI-PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 131 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l-~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 131 (240)
..-++.+...+.|++.+=|=|=.-.. ....-.++|+++.+.= .--+.+..+
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~---~~pi~~ggG------------------------- 80 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRET---GVPVQVGGG------------------------- 80 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhc---CCCEEEeCC-------------------------
Confidence 45556666688999988873222111 1111246777776620 001222110
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEE
Q 026320 132 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMF 186 (240)
Q Consensus 132 ~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lif 186 (240)
..+ .+.+++.+++||+.|++=+. ..+ ..+.+.+++++++.++++.
T Consensus 81 I~~----~ed~~~~~~~Ga~~vvlgs~-~l~-----d~~~~~~~~~~~g~~~i~~ 125 (230)
T TIGR00007 81 IRS----LEDVEKLLDLGVDRVIIGTA-AVE-----NPDLVKELLKEYGPERIVV 125 (230)
T ss_pred cCC----HHHHHHHHHcCCCEEEEChH-Hhh-----CHHHHHHHHHHhCCCcEEE
Confidence 112 67778888999999987433 221 2577888888888888773
No 473
>PLN02960 alpha-amylase
Probab=55.73 E-value=25 Score=37.73 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCCEEEecCCcc---------------c-----CChhHHHHHHHHHHHcCCcccceeee
Q 026320 55 KEYVEDCKQVGFDTIELNVGSL---------------E-----IPEETLLRYVRLVKSAGLKAKPKFAV 103 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGti---------------~-----l~~~~r~~lI~~~~~~G~~v~~E~g~ 103 (240)
++.+.++++||+++||++-=+- . =+.++..++|+.+.++|++|+-.+-.
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDvV~ 488 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDIVH 488 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4568899999999999963210 0 03567889999999999999988754
No 474
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=55.69 E-value=24 Score=35.20 Aligned_cols=74 Identities=12% Similarity=0.195 Sum_probs=54.5
Q ss_pred ccChhHHHHHHHHHHhCCceecC-Cc-HHHHHH--------HhCCchHHHHHHHHHHcCCCEEEecC---------Cccc
Q 026320 17 LMPKPFIEEVVKRAHQHDVYVST-GD-WAEHLI--------RNGPSAFKEYVEDCKQVGFDTIELNV---------GSLE 77 (240)
Q Consensus 17 l~p~~~l~eKi~l~~~~gV~v~~-Gt-l~E~a~--------~qg~~~~~~yl~~~k~lGF~~IEISd---------Gti~ 77 (240)
.+|-+.+++--++||+|||++.- |. ++|.|+ .++ -.+.++.++.-++ ||.|-+|- |.+-
T Consensus 200 pvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~-~si~eI~rE~~~~-aDsvt~slsKglgApvGg~La 277 (467)
T TIGR02617 200 PVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKN-WSIEQITRETYKY-ADMLAMSAKKDAMVPMGGLLC 277 (467)
T ss_pred EeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcC-CCHHHHHHHhhcc-CCEEEEEcCCCCCCcccceEE
Confidence 45677999999999999999988 75 999664 232 3677777665444 68888773 4556
Q ss_pred CChhHHHHHHHHHHH
Q 026320 78 IPEETLLRYVRLVKS 92 (240)
Q Consensus 78 l~~~~r~~lI~~~~~ 92 (240)
.+++.+.++-++++.
T Consensus 278 g~d~~~~~l~~~~~~ 292 (467)
T TIGR02617 278 FKDDSFFDVYTECRT 292 (467)
T ss_pred ecchhHHHHHHHHHh
Confidence 777766677777666
No 475
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=55.58 E-value=40 Score=33.69 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=15.5
Q ss_pred HHHHHHHHcCCcEEEEecc
Q 026320 140 RRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 140 ~~~~~dLeAGA~~ViiEar 158 (240)
..+.+.|++||+.||+=+.
T Consensus 364 ~di~kAla~GA~~V~vGs~ 382 (505)
T PLN02274 364 GHIVKALTLGASTVMMGSF 382 (505)
T ss_pred HHHHHHHHcCCCEEEEchh
Confidence 5567789999999998663
No 476
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=55.37 E-value=21 Score=32.58 Aligned_cols=20 Identities=15% Similarity=0.074 Sum_probs=16.1
Q ss_pred HHHHHHHHHcCCcEEEEecc
Q 026320 139 IRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 139 i~~~~~dLeAGA~~ViiEar 158 (240)
.+++++..++|||-||+=+.
T Consensus 214 ~e~~~~~~~~GADGvVVGSa 233 (263)
T CHL00200 214 SEQIKQIKGWNINGIVIGSA 233 (263)
T ss_pred HHHHHHHHhcCCCEEEECHH
Confidence 35677778999999999775
No 477
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=55.32 E-value=24 Score=32.53 Aligned_cols=66 Identities=8% Similarity=0.061 Sum_probs=43.4
Q ss_pred ccChhHHHHHHHHHHhCCceec---C-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHH
Q 026320 17 LMPKPFIEEVVKRAHQHDVYVS---T-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKS 92 (240)
Q Consensus 17 l~p~~~l~eKi~l~~~~gV~v~---~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~ 92 (240)
+++.+.|++-|+.+..++.... . .+| ++ .+ + -|+..+.-..+.++..++++.|++
T Consensus 13 ~~~~~~lk~~id~ma~~k~N~l~lhl~D~f-~~---~~------~-----------p~~~~~~~~yT~~ei~ei~~yA~~ 71 (301)
T cd06565 13 VPKVSYLKKLLRLLALLGANGLLLYYEDTF-PY---EG------E-----------PEVGRMRGAYTKEEIREIDDYAAE 71 (301)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEecce-ec---CC------C-----------cccccCCCCcCHHHHHHHHHHHHH
Confidence 4556778888888888777332 2 332 11 11 0 112222335899999999999999
Q ss_pred cCCcccceeee
Q 026320 93 AGLKAKPKFAV 103 (240)
Q Consensus 93 ~G~~v~~E~g~ 103 (240)
+|..|+||+-.
T Consensus 72 ~gI~vIPeid~ 82 (301)
T cd06565 72 LGIEVIPLIQT 82 (301)
T ss_pred cCCEEEecCCC
Confidence 99999999754
No 478
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=55.32 E-value=24 Score=37.58 Aligned_cols=53 Identities=17% Similarity=0.121 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC--------------------ChhHHHHHHHHHHHcCCcccceeeeec
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEI--------------------PEETLLRYVRLVKSAGLKAKPKFAVMF 105 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l--------------------~~~~r~~lI~~~~~~G~~v~~E~g~k~ 105 (240)
.+.+-+.+++++||++|.+|==+-.. +.++..++++.++++|++|+-.+-..+
T Consensus 17 ~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH 89 (825)
T TIGR02401 17 DAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNH 89 (825)
T ss_pred HHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 35566788899999999887533211 378899999999999999998887643
No 479
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=55.28 E-value=1.2e+02 Score=28.57 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 134 DVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
+.++.++.++.--++|+|+|-|=+.
T Consensus 233 ~~ee~~~i~~~L~~~GvD~I~Vs~g 257 (353)
T cd04735 233 RMEDTLALVDKLADKGLDYLHISLW 257 (353)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccC
Confidence 4677788888888999999988553
No 480
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=55.25 E-value=29 Score=32.52 Aligned_cols=140 Identities=16% Similarity=0.228 Sum_probs=79.2
Q ss_pred ccChhHHHHHHHHHHhCCc-eec-CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcC
Q 026320 17 LMPKPFIEEVVKRAHQHDV-YVS-TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAG 94 (240)
Q Consensus 17 l~p~~~l~eKi~l~~~~gV-~v~-~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G 94 (240)
-++.+.+++.|+.+++.|+ .+. +|| |-.+ +. .+.+.++++++.|+...=++||++ |+.+ .++.+++.|
T Consensus 45 ~~~~e~~~~ii~~~~~~g~~~v~~~GG--EPll-~~--~~~~il~~~~~~g~~~~i~TNG~l-l~~~----~~~~L~~~g 114 (378)
T PRK05301 45 ELSTEEWIRVLREARALGALQLHFSGG--EPLL-RK--DLEELVAHARELGLYTNLITSGVG-LTEA----RLAALKDAG 114 (378)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEECC--ccCC-ch--hHHHHHHHHHHcCCcEEEECCCcc-CCHH----HHHHHHHcC
Confidence 4666778899999999997 343 353 2222 22 578999999999998887889985 5543 456666777
Q ss_pred CcccceeeeecCCCCCCCccccccccccccCCCCcccc-cCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccH-HHH
Q 026320 95 LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV-EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRA-DII 172 (240)
Q Consensus 95 ~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~-d~v 172 (240)
+. .+.+.-.. . +++....+. +. -+-+..++.++...++|-...+. . -+.. .|+.. ..+
T Consensus 115 ~~---~v~iSldg--~----~~e~~d~ir-------g~~g~f~~~~~~i~~l~~~g~~v~i~-~-vv~~--~N~~~i~~~ 174 (378)
T PRK05301 115 LD---HIQLSFQD--S----DPELNDRLA-------GTKGAFAKKLAVARLVKAHGYPLTLN-A-VIHR--HNIDQIPRI 174 (378)
T ss_pred CC---EEEEEecC--C----CHHHHHHHc-------CCCchHHHHHHHHHHHHHCCCceEEE-E-Eeec--CCHHHHHHH
Confidence 64 23332111 0 000000011 11 13577788888888888653321 0 1222 22211 122
Q ss_pred HHHHhccCCCceEE
Q 026320 173 AKVIGRLGLEKTMF 186 (240)
Q Consensus 173 ~~i~~~~~~~~lif 186 (240)
-+++..+|++.+.|
T Consensus 175 ~~~~~~lgv~~i~~ 188 (378)
T PRK05301 175 IELAVELGADRLEL 188 (378)
T ss_pred HHHHHHcCCCEEEE
Confidence 33556788887765
No 481
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=55.16 E-value=70 Score=31.13 Aligned_cols=119 Identities=13% Similarity=0.202 Sum_probs=72.3
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcccCChh
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLEIPEE 81 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~l~~~ 81 (240)
-++-+=||+||..+. ++.|++.++.++++ ++ -|+.+.-+|+. -+++++.++++ |+.|+| |--+.+++
T Consensus 101 ~~~siy~GGGTPs~l-~~~L~~ll~~i~~~f~i-------~eis~E~~P~~lt~e~L~~l~~~-vnrlsi--GVQS~~d~ 169 (433)
T PRK08629 101 DFESMYVGGGTTTIL-EDELAKTLELAKKLFSI-------KEVSCESDPNHLDPPKLKQLKGL-IDRLSI--GVQSFNDD 169 (433)
T ss_pred ceEEEEECCCccccC-HHHHHHHHHHHHHhCCC-------ceEEEEeCcccCCHHHHHHHHHh-CCeEEE--ecCcCCHH
Confidence 366777899999987 57799999999876 22 13333334443 35778888998 998666 44444433
Q ss_pred HH------------HHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHc
Q 026320 82 TL------------LRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA 148 (240)
Q Consensus 82 ~r------------~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeA 148 (240)
.. .+.++.++.. +. .+.+++-. . +| -|. +|.+.+.+.++..++.
T Consensus 170 vLk~~gR~h~~~~~~~~~~~l~~~~~~--~~~v~~Dl-I--~G-----------lPg-------qT~e~~~~~l~~~~~l 226 (433)
T PRK08629 170 ILKMVDRYEKFGSGQETFEKIMKAKGL--FPIINVDL-I--FN-----------FPG-------QTDEVLQHDLDIAKRL 226 (433)
T ss_pred HHHHcCCCCChhHHHHHHHHHHHHhcc--CCeEEEEE-E--cc-----------CCC-------CCHHHHHHHHHHHHhC
Confidence 32 2334444432 11 12233311 0 11 011 2578999999999999
Q ss_pred CCcEEEEe
Q 026320 149 GADMIMID 156 (240)
Q Consensus 149 GA~~ViiE 156 (240)
|.+.|-+=
T Consensus 227 ~p~~is~y 234 (433)
T PRK08629 227 DPRQITTY 234 (433)
T ss_pred CCCEEEEc
Confidence 99987553
No 482
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=55.07 E-value=53 Score=27.39 Aligned_cols=73 Identities=16% Similarity=0.331 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHhC--CceecC--CcHHHH---HHHhCCc----hHHHHHHHHHHcCCCEEEecCCcccCC----hhHHH
Q 026320 20 KPFIEEVVKRAHQH--DVYVST--GDWAEH---LIRNGPS----AFKEYVEDCKQVGFDTIELNVGSLEIP----EETLL 84 (240)
Q Consensus 20 ~~~l~eKi~l~~~~--gV~v~~--Gtl~E~---a~~qg~~----~~~~yl~~~k~lGF~~IEISdGti~l~----~~~r~ 84 (240)
.+.....+..+++. |+++.+ |+|-.. .+..++. -++...+.+++.|||.|.|.==....+ .+...
T Consensus 48 ~~~~~~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~ 127 (210)
T cd00598 48 EEPLKGALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFI 127 (210)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHH
Confidence 34566777777776 887775 653211 1122211 367788888999999999975544443 35566
Q ss_pred HHHHHHHH
Q 026320 85 RYVRLVKS 92 (240)
Q Consensus 85 ~lI~~~~~ 92 (240)
.+++..++
T Consensus 128 ~ll~~lr~ 135 (210)
T cd00598 128 TLLRELRS 135 (210)
T ss_pred HHHHHHHH
Confidence 67777766
No 483
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=54.97 E-value=99 Score=26.79 Aligned_cols=95 Identities=11% Similarity=0.071 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhCCceecCCcHHHHHH----------HhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHH
Q 026320 21 PFIEEVVKRAHQHDVYVSTGDWAEHLI----------RNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLV 90 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~v~~Gtl~E~a~----------~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~ 90 (240)
+.+++-.++++++|+++.- |..+ .. .+.+-.+.+.++|.|+|-++... +...+=+.+
T Consensus 109 ~~i~~v~~~~~~~g~~~ii----e~~~~g~~~~~~~~~~---~i~~~~~~a~~~GaD~Ik~~~~~------~~~~~~~i~ 175 (235)
T cd00958 109 EELARVAAEAHKYGLPLIA----WMYPRGPAVKNEKDPD---LIAYAARIGAELGADIVKTKYTG------DAESFKEVV 175 (235)
T ss_pred HHHHHHHHHHHHcCCCEEE----EEeccCCcccCccCHH---HHHHHHHHHHHHCCCEEEecCCC------CHHHHHHHH
Q ss_pred HHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEE
Q 026320 91 KSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 155 (240)
Q Consensus 91 ~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~Vii 155 (240)
+.....|+--=|.+-. |+++..++++..+++||+-|.+
T Consensus 176 ~~~~~pvv~~GG~~~~---------------------------~~~~~l~~~~~~~~~Ga~gv~v 213 (235)
T cd00958 176 EGCPVPVVIAGGPKKD---------------------------SEEEFLKMVYDAMEAGAAGVAV 213 (235)
T ss_pred hcCCCCEEEeCCCCCC---------------------------CHHHHHHHHHHHHHcCCcEEEe
No 484
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=54.94 E-value=1.7e+02 Score=26.74 Aligned_cols=101 Identities=21% Similarity=0.251 Sum_probs=59.1
Q ss_pred HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccc
Q 026320 45 HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 124 (240)
Q Consensus 45 ~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~ 124 (240)
.-.++- .|..+++.+++++...|==+-+ ...++++.+++.+. +--|+-...+
T Consensus 107 ~~~Q~~--~F~~ql~lA~~~~lPviIH~R~-------A~~d~~~iL~~~~~---~~~gi~HcFs---------------- 158 (256)
T COG0084 107 KERQEE--VFEAQLELAKELNLPVIIHTRD-------AHEDTLEILKEEGA---PVGGVLHCFS---------------- 158 (256)
T ss_pred HHHHHH--HHHHHHHHHHHcCCCEEEEccc-------cHHHHHHHHHhcCC---CCCEEEEccC----------------
Confidence 334444 6788888888888665544433 22244455555433 1123322211
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCc
Q 026320 125 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 191 (240)
Q Consensus 125 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifEAP~k 191 (240)
.+ ++++++.++.| .+|=+=+ -|+..+ ...+.+++..+|+++|+.|...|
T Consensus 159 --------Gs----~e~a~~~~d~G-~yisisG-~itfk~----a~~~~ev~~~iPldrLL~ETDsP 207 (256)
T COG0084 159 --------GS----AEEARKLLDLG-FYISISG-IVTFKN----AEKLREVARELPLDRLLLETDAP 207 (256)
T ss_pred --------CC----HHHHHHHHHcC-eEEEECc-eeecCC----cHHHHHHHHhCCHhHeEeccCCC
Confidence 12 78899999999 4443322 133333 34578899999999999997644
No 485
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=54.87 E-value=19 Score=30.43 Aligned_cols=84 Identities=18% Similarity=0.298 Sum_probs=53.8
Q ss_pred EEEecCccccccChhHHHHHHHHHHhCCceecCCc--HHHHHHHhCCchHHHHHHHHHHcCCC---EEEecCCcccCChh
Q 026320 7 GLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGD--WAEHLIRNGPSAFKEYVEDCKQVGFD---TIELNVGSLEIPEE 81 (240)
Q Consensus 7 ~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gt--l~E~a~~qg~~~~~~yl~~~k~lGF~---~IEISdGti~l~~~ 81 (240)
++|.+-||..+.| ....-++-|+++|+++ |. |+.. -.+..+..+.|++.++..+.+ ++.+-+.. ..+..
T Consensus 26 iiKateG~~y~D~--~~~~~~~~a~~aGl~~--G~Yhy~~~-~~~a~~qA~~f~~~~~~~~~~~~~~lD~E~~~-~~~~~ 99 (184)
T cd06525 26 YIKATEGTTFVDS--YFNENYNGAKAAGLKV--GFYHFLVG-TSNPEEQAENFYNTIKGKKMDLKPALDVEVNF-GLSKD 99 (184)
T ss_pred EEEecCCCcccCH--hHHHHHHHHHHCCCce--EEEEEeeC-CCCHHHHHHHHHHhccccCCCCCeEEEEecCC-CCCHH
Confidence 6899999998888 8999999999999843 32 2321 011112578899999988765 33443322 12333
Q ss_pred H----HHHHHHHHHHc-CCc
Q 026320 82 T----LLRYVRLVKSA-GLK 96 (240)
Q Consensus 82 ~----r~~lI~~~~~~-G~~ 96 (240)
+ -.+++++++++ |.+
T Consensus 100 ~~~~~~~~f~~~v~~~~G~~ 119 (184)
T cd06525 100 ELNDYVLRFIEEFEKLSGLK 119 (184)
T ss_pred HHHHHHHHHHHHHHHHHCCC
Confidence 3 35667777776 554
No 486
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=54.78 E-value=1.3e+02 Score=25.42 Aligned_cols=94 Identities=20% Similarity=0.201 Sum_probs=59.2
Q ss_pred ChhHHHHHHHHHHhCCceec-----CCcHHH---HHHHhCCch-------H-HHHHHHHHHcCCCEEEecCCcccCChhH
Q 026320 19 PKPFIEEVVKRAHQHDVYVS-----TGDWAE---HLIRNGPSA-------F-KEYVEDCKQVGFDTIELNVGSLEIPEET 82 (240)
Q Consensus 19 p~~~l~eKi~l~~~~gV~v~-----~Gtl~E---~a~~qg~~~-------~-~~yl~~~k~lGF~~IEISdGti~l~~~~ 82 (240)
+++.+.+.++.+.+.|+... ...+.| ..-.+-|+- + .+-++.+.++|-+.| ++-++.
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i-~~p~~~------ 86 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFI-VSPGLD------ 86 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE-EcCCCC------
Confidence 35567777888888888332 233444 222232211 2 677888999999988 344432
Q ss_pred HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEE
Q 026320 83 LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 155 (240)
Q Consensus 83 r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~Vii 155 (240)
..+++.+++.|..+.+ |+. | .+++.+.+++|||+|.+
T Consensus 87 -~~~~~~~~~~~~~~i~--gv~-----------------------------t----~~e~~~A~~~Gad~i~~ 123 (190)
T cd00452 87 -PEVVKAANRAGIPLLP--GVA-----------------------------T----PTEIMQALELGADIVKL 123 (190)
T ss_pred -HHHHHHHHHcCCcEEC--CcC-----------------------------C----HHHHHHHHHCCCCEEEE
Confidence 3677778777665554 331 1 35667778999999997
No 487
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=54.72 E-value=49 Score=32.94 Aligned_cols=70 Identities=19% Similarity=0.297 Sum_probs=44.1
Q ss_pred HHHHHHHHcCCCEEEec--CCccc---------CChhH-HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 026320 56 EYVEDCKQVGFDTIELN--VGSLE---------IPEET-LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 123 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEIS--dGti~---------l~~~~-r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~ 123 (240)
+=.+.+.+.|.|.|-|+ -|++- .|.-. -.++.+.+++.|..++++=|++.
T Consensus 294 ~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~------------------ 355 (495)
T PTZ00314 294 DQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKN------------------ 355 (495)
T ss_pred HHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCC------------------
Confidence 34556788999999875 44432 23222 23444556666766666666632
Q ss_pred cCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 124 RAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 124 ~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
-..+.+.|++||+.||+=+.
T Consensus 356 ---------------~~di~kAla~GA~~Vm~G~~ 375 (495)
T PTZ00314 356 ---------------SGDICKALALGADCVMLGSL 375 (495)
T ss_pred ---------------HHHHHHHHHcCCCEEEECch
Confidence 24456678999999998653
No 488
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=54.72 E-value=24 Score=33.81 Aligned_cols=115 Identities=18% Similarity=0.249 Sum_probs=80.5
Q ss_pred HHHH-HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 54 FKEY-VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 54 ~~~y-l~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
+|+| +.+++.+|=|+|=+=-..+ ++++..++++.+++.||.|+.|++-
T Consensus 191 ID~yQI~eAr~~GADAVLLIaaiL--~~~~L~~l~~~A~~LGme~LVEVH~----------------------------- 239 (338)
T PLN02460 191 VDAWQIYYARSKGADAILLIAAVL--PDLDIKYMLKICKSLGMAALIEVHD----------------------------- 239 (338)
T ss_pred CCHHHHHHHHHcCCCcHHHHHHhC--CHHHHHHHHHHHHHcCCeEEEEeCC-----------------------------
Confidence 3444 5778888988887665554 5778899999999999999999876
Q ss_pred cCHHHHHHHHHHHHHc-CCcEEEEeccccccCCCCccHHHHHHHHh-----ccCCCce--EEecC-CchhHHHHHHHhCC
Q 026320 133 EDVDLLIRRAERCLEA-GADMIMIDSDDVCKHADSLRADIIAKVIG-----RLGLEKT--MFEAT-NPRTSEWFIRRYGP 203 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeA-GA~~ViiEargi~d~~g~~r~d~v~~i~~-----~~~~~~l--ifEAP-~k~qQ~~~I~~fG~ 203 (240)
-+++++.|++ ||..|-|=.|.+-.= ++.-+.-.+++. .++++.+ +=|.= .-..+...+++.|.
T Consensus 240 ------~~ElerAl~~~ga~iIGINNRdL~Tf--~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~Ga 311 (338)
T PLN02460 240 ------EREMDRVLGIEGVELIGINNRSLETF--EVDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGV 311 (338)
T ss_pred ------HHHHHHHHhcCCCCEEEEeCCCCCcc--eECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCC
Confidence 3556777998 999999999865221 222444555665 4543333 34444 33467888888998
Q ss_pred Cccc
Q 026320 204 KVNL 207 (240)
Q Consensus 204 ~VNL 207 (240)
|-=|
T Consensus 312 dAvL 315 (338)
T PLN02460 312 KAVL 315 (338)
T ss_pred CEEE
Confidence 7766
No 489
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=54.39 E-value=53 Score=28.04 Aligned_cols=81 Identities=20% Similarity=0.268 Sum_probs=51.8
Q ss_pred EEEecCccccccChhHHHHHHHHHHhCCceecCCc--HHH----HHHHhCCchHHHHHHHHHHcCCC-----E--EEecC
Q 026320 7 GLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGD--WAE----HLIRNGPSAFKEYVEDCKQVGFD-----T--IELNV 73 (240)
Q Consensus 7 ~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gt--l~E----~a~~qg~~~~~~yl~~~k~lGF~-----~--IEISd 73 (240)
++|.+-||..+.| ...+-++-|+++|+++ |. |+. ..-.+. ..+-|++.++..|+. + ||-++
T Consensus 26 iiKateG~~~~d~--~~~~n~~~A~~aGl~v--G~Yhf~~~~~~~~~a~~--eA~~f~~~~~~~~l~~~~~~~lDvE~~~ 99 (196)
T cd06415 26 IVKISEGTNYVNP--KASAQVSSAIANGKMT--GGYHFARFGGSVSQAKY--EADYFLNSAQQAGLPKGSYLALDYEQGS 99 (196)
T ss_pred EEEEcCCCccCCc--cHHHHHHHHHHCCCee--EEEEEEecCCCHHHHHH--HHHHHHHHhhhcCCCCCCEEEEEEecCC
Confidence 6899999999988 8999999999999854 32 221 111111 345588889987765 3 55554
Q ss_pred CcccCChhHHH----HHHHHHHHcCCc
Q 026320 74 GSLEIPEETLL----RYVRLVKSAGLK 96 (240)
Q Consensus 74 Gti~l~~~~r~----~lI~~~~~~G~~ 96 (240)
+. +.+... .+++++++.|.+
T Consensus 100 ~~---~~~~~~~~~~~f~~~v~~~G~~ 123 (196)
T cd06415 100 GN---SKAANTSAILAFMDTIKDAGYK 123 (196)
T ss_pred CC---CHHHHHHHHHHHHHHHHHhCCC
Confidence 32 434333 455566655554
No 490
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=54.27 E-value=1.6e+02 Score=26.29 Aligned_cols=42 Identities=10% Similarity=0.092 Sum_probs=24.2
Q ss_pred ccccCCCCccHHHHHHHHhccCCCceEEecCCchhHHHHHHHhCCC
Q 026320 159 DVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPK 204 (240)
Q Consensus 159 gi~d~~g~~r~d~v~~i~~~~~~~~lifEAP~k~qQ~~~I~~fG~~ 204 (240)
||=+..++ ...+.+++...+.+--+|...... .... ...|.+
T Consensus 158 giK~s~~~--~~~~~~~~~~~~~~~~v~~G~d~~-~~~~-~~~G~~ 199 (284)
T cd00950 158 GIKEATGD--LDRVSELIALCPDDFAVLSGDDAL-TLPF-LALGGV 199 (284)
T ss_pred EEEECCCC--HHHHHHHHHhCCCCeEEEeCChHh-HHHH-HHCCCC
Confidence 33334443 355666777777667788887643 2332 356766
No 491
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=54.26 E-value=75 Score=29.27 Aligned_cols=103 Identities=22% Similarity=0.259 Sum_probs=60.7
Q ss_pred HHHHHHHHHhCCceecC--CcH--HHHH-----HHhCCchHHHHHHHHHHcCCCEEEecCCccc-CC---hhHHHHHHHH
Q 026320 23 IEEVVKRAHQHDVYVST--GDW--AEHL-----IRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-IP---EETLLRYVRL 89 (240)
Q Consensus 23 l~eKi~l~~~~gV~v~~--Gtl--~E~a-----~~qg~~~~~~yl~~~k~lGF~~IEISdGti~-l~---~~~r~~lI~~ 89 (240)
.++-++++|.+|+.+.. |.. -|-. ..- ...++..+..++.|.|++=+|-|++- +. ..-..+.++.
T Consensus 117 t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~--t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~ 194 (282)
T TIGR01859 117 TKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAEL--ADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKE 194 (282)
T ss_pred HHHHHHHHHHcCCEEEEeeCCCcCcccccccccccc--CCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHH
Confidence 56778899999998773 431 1110 111 26777777788889999999988853 11 1112334444
Q ss_pred HHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 90 VKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 90 ~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
+++.= -+|= +-.+.|-+ + .+++++.+++|+++|=|=..
T Consensus 195 i~~~~--~iPl--v~hGgSGi------------~---------------~e~i~~~i~~Gi~kiNv~T~ 232 (282)
T TIGR01859 195 IKELT--NIPL--VLHGASGI------------P---------------EEQIKKAIKLGIAKINIDTD 232 (282)
T ss_pred HHHHh--CCCE--EEECCCCC------------C---------------HHHHHHHHHcCCCEEEECcH
Confidence 44420 0221 22222222 1 46778889999999977654
No 492
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=54.21 E-value=39 Score=30.88 Aligned_cols=67 Identities=21% Similarity=0.200 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 133 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 133 (240)
++..+..++++|++.+-++-..+.+. .++|+.++++|+.|.+ .++.+ .
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~Gl~v~~-wTv~~--------n------------------- 272 (293)
T cd08572 225 LQAAVNFALAEGLLGVVLHAEDLLKN----PSLISLVKALGLVLFT-YGDDN--------N------------------- 272 (293)
T ss_pred HHHHHHHHHHCCCeEEEechHHhhcC----cHHHHHHHHcCcEEEE-ECCCC--------C-------------------
Confidence 55677788888888877665443332 3789999999888654 33310 0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEe
Q 026320 134 DVDLLIRRAERCLEAGADMIMID 156 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiE 156 (240)
+ .+.+++..++|++-||..
T Consensus 273 ~----~~~~~~l~~~GVdgIiTD 291 (293)
T cd08572 273 D----PENVKKQKELGVDGVIYD 291 (293)
T ss_pred C----HHHHHHHHHcCCCEEEec
Confidence 1 346778889999999864
No 493
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=53.98 E-value=49 Score=29.23 Aligned_cols=58 Identities=33% Similarity=0.376 Sum_probs=36.6
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHH
Q 026320 59 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 138 (240)
Q Consensus 59 ~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~ 138 (240)
..++++|+..+.++...+ ..++|++++++|++|.. .++ .|
T Consensus 180 ~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~g~~v~~-WTv-----------------------------n~---- 219 (249)
T PRK09454 180 ELTRRLGCVSLHLNHKLL------DEARVAALKAAGLRILV-YTV-----------------------------ND---- 219 (249)
T ss_pred HHHHhcCCeEEecccccC------CHHHHHHHHHCCCEEEE-EeC-----------------------------CC----
Confidence 334455655555443332 24788888888887644 222 12
Q ss_pred HHHHHHHHHcCCcEEEEe
Q 026320 139 IRRAERCLEAGADMIMID 156 (240)
Q Consensus 139 i~~~~~dLeAGA~~ViiE 156 (240)
-+++++.+++|++.||..
T Consensus 220 ~~~~~~l~~~GVdgIiTD 237 (249)
T PRK09454 220 PARARELLRWGVDCICTD 237 (249)
T ss_pred HHHHHHHHHcCCCEEEeC
Confidence 346788899999999876
No 494
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=53.97 E-value=1.1e+02 Score=29.09 Aligned_cols=88 Identities=16% Similarity=0.326 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHH------------------------HcCCcccceeeeecCCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVK------------------------SAGLKAKPKFAVMFNKS 108 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~------------------------~~G~~v~~E~g~k~~~~ 108 (240)
.+....+.+.++|.+-|-|+-|-=.|- .+..++|++.+ ++|++ .+++. ..
T Consensus 47 ei~~~~~~~~~~Gv~kvRlTGGEPllR-~dl~eIi~~l~~~~~~~islTTNG~~L~~~a~~Lk~AGl~---rVNVS--LD 120 (322)
T COG2896 47 EIRRLVRAFAELGVEKVRLTGGEPLLR-KDLDEIIARLARLGIRDLSLTTNGVLLARRAADLKEAGLD---RVNVS--LD 120 (322)
T ss_pred HHHHHHHHHHHcCcceEEEeCCCchhh-cCHHHHHHHHhhcccceEEEecchhhHHHHHHHHHHcCCc---EEEee--cc
Confidence 566667777777777777777643332 22234444444 44444 44442 11
Q ss_pred CCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCc-----EEEEec
Q 026320 109 DIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD-----MIMIDS 157 (240)
Q Consensus 109 evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~-----~ViiEa 157 (240)
.+ +...| +.++ +...+++.++-+++..+||.. +|++.+
T Consensus 121 sl---d~e~f-~~IT-------~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kg 163 (322)
T COG2896 121 SL---DPEKF-RKIT-------GRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKG 163 (322)
T ss_pred cC---CHHHH-HHHh-------CCCcHHHHHHHHHHHHHcCCCceEEEEEEecC
Confidence 12 11122 1122 223479999999999999998 566665
No 495
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=53.75 E-value=60 Score=30.39 Aligned_cols=78 Identities=19% Similarity=0.266 Sum_probs=48.7
Q ss_pred HHHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccc
Q 026320 58 VEDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 124 (240)
Q Consensus 58 l~~~k~lGF~~IEISdGti-------------~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~ 124 (240)
.+.+.+.||+.|+|+=|.= --.++.-.++++.+++. . -+| +.+|-.. |..++
T Consensus 73 A~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~-~-~~P-VsvKiR~---g~~~~--------- 137 (318)
T TIGR00742 73 AKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEA-V-NIP-VTVKHRI---GIDPL--------- 137 (318)
T ss_pred HHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHH-h-CCC-eEEEEec---CCCCc---------
Confidence 3444567999999987752 12233346677777763 1 123 6666421 10000
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 125 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 125 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
.+.+.+++.++...++||+.|.|-+|
T Consensus 138 --------~~~~~~~~~~~~l~~~G~~~itvHgR 163 (318)
T TIGR00742 138 --------DSYEFLCDFVEIVSGKGCQNFIVHAR 163 (318)
T ss_pred --------chHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 13466778888888999999999998
No 496
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=53.62 E-value=19 Score=37.41 Aligned_cols=61 Identities=18% Similarity=0.359 Sum_probs=47.8
Q ss_pred ceecCCc-HHHHHHHhCCchHHHHHHHHHHcCCCEEEe----------cCCcccCChhHHHHHHHHHHHcCCcccc
Q 026320 35 VYVSTGD-WAEHLIRNGPSAFKEYVEDCKQVGFDTIEL----------NVGSLEIPEETLLRYVRLVKSAGLKAKP 99 (240)
Q Consensus 35 V~v~~Gt-l~E~a~~qg~~~~~~yl~~~k~lGF~~IEI----------SdGti~l~~~~r~~lI~~~~~~G~~v~~ 99 (240)
+..+.|+ -.|..-. . ..++=++.+|.+||++|++ ..|..+.+.-+.. ++++|.+.||.|+-
T Consensus 15 ~~l~gG~y~p~~~p~-~--~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~~~D~~-~l~~a~~~Gl~vil 86 (673)
T COG1874 15 ILLYGGDYYPERWPR-E--TWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFTWLDEI-FLERAYKAGLYVIL 86 (673)
T ss_pred eEEeccccChHHCCH-H--HHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcccchHH-HHHHHHhcCceEEE
Confidence 3455565 3565544 3 7888899999999999999 6788888876666 79999999999763
No 497
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=53.61 E-value=1.4e+02 Score=27.31 Aligned_cols=74 Identities=22% Similarity=0.356 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhCCceecC--CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 026320 22 FIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 99 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~--Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~ 99 (240)
.+-+.+..++..||.+.- =|+.--.+..| .+.|++.+|+.|-+..=| .++|+++-..+-..++++|+...|
T Consensus 81 ~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG---~e~~iq~ak~aGanGfii----vDlPpEEa~~~Rne~~k~gislvp 153 (268)
T KOG4175|consen 81 SIIEMVKEARPQGVTCPIILMGYYNPILRYG---VENYIQVAKNAGANGFII----VDLPPEEAETLRNEARKHGISLVP 153 (268)
T ss_pred HHHHHHHHhcccCcccceeeeecccHHHhhh---HHHHHHHHHhcCCCceEe----ccCChHHHHHHHHHHHhcCceEEE
Confidence 455677778888885443 36666667775 889999999999653333 379999999999999998887666
Q ss_pred eee
Q 026320 100 KFA 102 (240)
Q Consensus 100 E~g 102 (240)
-+.
T Consensus 154 Lva 156 (268)
T KOG4175|consen 154 LVA 156 (268)
T ss_pred eeC
Confidence 443
No 498
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=53.52 E-value=72 Score=29.67 Aligned_cols=98 Identities=23% Similarity=0.370 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhCCceecC--CcH--------HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc--------CChhHH
Q 026320 22 FIEEVVKRAHQHDVYVST--GDW--------AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--------IPEETL 83 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~--Gtl--------~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~--------l~~~~r 83 (240)
.-++-+++||.+||.|-. |.. .+..+.. ..++-.+.+++-|.|++-||-||.- |..+ |
T Consensus 119 ~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT---~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~-~ 194 (286)
T PRK08610 119 TTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYA---DPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFK-E 194 (286)
T ss_pred HHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccC---CHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHH-H
Confidence 357889999999997753 421 1212223 3445555556789999999999972 3333 3
Q ss_pred HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 84 LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 84 ~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
++-|+...+ .| -|.++.|-++ -+++++.++.|..+|=|-.
T Consensus 195 L~~I~~~~~-----vP--LVLHGgSG~~---------------------------~e~~~~ai~~GI~KiNi~T 234 (286)
T PRK08610 195 MEEIGLSTG-----LP--LVLHGGTGIP---------------------------TKDIQKAIPFGTAKINVNT 234 (286)
T ss_pred HHHHHHHHC-----CC--EEEeCCCCCC---------------------------HHHHHHHHHCCCeEEEecc
Confidence 333333221 23 2555554332 3667888999999996655
No 499
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=53.25 E-value=1.2e+02 Score=29.80 Aligned_cols=76 Identities=13% Similarity=0.159 Sum_probs=54.4
Q ss_pred HHHHHHHHHcCCCEEEecCCcc----------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccc
Q 026320 55 KEYVEDCKQVGFDTIELNVGSL----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 124 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGti----------~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~ 124 (240)
++.++.+++.|+..|.+.--|. ..+.++-.+.|+.++++|+.+...|=+ +. |
T Consensus 287 ~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~--G~----------------P 348 (497)
T TIGR02026 287 ADILHLYRRAGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFIT--GF----------------E 348 (497)
T ss_pred HHHHHHHHHhCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEE--EC----------------C
Confidence 5789999999999998843333 245567778999999999986543333 21 0
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCCcEEEE
Q 026320 125 APRSTEYVEDVDLLIRRAERCLEAGADMIMI 155 (240)
Q Consensus 125 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~Vii 155 (240)
-++.+++.+.++..++.+.+++.+
T Consensus 349 -------~et~e~~~~t~~~~~~l~~~~~~~ 372 (497)
T TIGR02026 349 -------NETDETFEETYRQLLDWDPDQANW 372 (497)
T ss_pred -------CCCHHHHHHHHHHHHHcCCCceEE
Confidence 024678888888888889887665
No 500
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.20 E-value=30 Score=24.43 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=33.1
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCc-----------ccCC-hhHHHHHHHHHHHcCCcc
Q 026320 51 PSAFKEYVEDCKQVGFDTIELNVGS-----------LEIP-EETLLRYVRLVKSAGLKA 97 (240)
Q Consensus 51 ~~~~~~yl~~~k~lGF~~IEISdGt-----------i~l~-~~~r~~lI~~~~~~G~~v 97 (240)
|+.+.++++...+ |.+.+|++-.. ++.+ .+...+++...+++|+.+
T Consensus 9 PG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 9 PGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEALGYPY 66 (68)
T ss_pred CCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 4577778887777 78777765432 2333 378889999999999875
Done!