Query 026322
Match_columns 240
No_of_seqs 154 out of 1054
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 06:30:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026322.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026322hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0959 N-arginine dibasic con 100.0 2.5E-41 5.5E-46 312.0 24.7 236 1-238 528-763 (974)
2 COG1025 Ptr Secreted/periplasm 100.0 3.3E-35 7.2E-40 267.9 24.0 228 1-237 520-748 (937)
3 PRK15101 protease3; Provisiona 100.0 4.3E-29 9.3E-34 240.2 27.6 226 1-238 541-767 (961)
4 TIGR02110 PQQ_syn_pqqF coenzym 99.4 2E-11 4.4E-16 112.7 20.6 183 3-186 18-212 (696)
5 COG0612 PqqL Predicted Zn-depe 99.4 5.9E-12 1.3E-16 111.9 15.6 182 4-186 36-225 (438)
6 PRK15101 protease3; Provisiona 99.1 2E-09 4.3E-14 104.5 15.2 183 4-187 63-258 (961)
7 PF00675 Peptidase_M16: Insuli 98.8 1E-07 2.2E-12 72.1 11.1 124 3-127 9-137 (149)
8 KOG0960 Mitochondrial processi 98.7 8.6E-07 1.9E-11 75.2 14.4 181 4-185 52-240 (467)
9 PTZ00432 falcilysin; Provision 98.4 4.3E-06 9.3E-11 82.1 12.7 176 5-185 114-330 (1119)
10 KOG2067 Mitochondrial processi 97.9 7.3E-05 1.6E-09 63.9 9.1 180 5-186 44-231 (472)
11 PF05193 Peptidase_M16_C: Pept 97.7 0.00025 5.5E-09 54.4 8.5 47 141-187 1-47 (184)
12 KOG2583 Ubiquinol cytochrome c 97.5 0.0068 1.5E-07 52.1 14.9 173 4-180 41-221 (429)
13 KOG2067 Mitochondrial processi 97.3 0.0027 5.8E-08 54.6 10.4 145 21-174 301-450 (472)
14 COG0612 PqqL Predicted Zn-depe 96.9 0.014 3.1E-07 52.0 11.4 98 71-169 331-432 (438)
15 COG1025 Ptr Secreted/periplasm 96.8 0.069 1.5E-06 51.1 15.6 184 4-189 43-240 (937)
16 COG1026 Predicted Zn-dependent 96.7 0.029 6.2E-07 53.8 12.3 108 72-180 112-236 (978)
17 KOG0959 N-arginine dibasic con 96.2 0.16 3.4E-06 49.3 14.1 183 6-189 49-245 (974)
18 KOG0961 Predicted Zn2+-depende 95.9 0.068 1.5E-06 49.4 9.4 127 61-189 100-240 (1022)
19 PF05193 Peptidase_M16_C: Pept 95.4 0.18 3.8E-06 38.3 9.2 96 5-101 78-184 (184)
20 PTZ00432 falcilysin; Provision 95.3 0.63 1.4E-05 46.6 14.7 162 9-170 682-882 (1119)
21 KOG0960 Mitochondrial processi 95.2 0.65 1.4E-05 40.4 12.3 163 3-169 267-450 (467)
22 COG1026 Predicted Zn-dependent 92.6 7.4 0.00016 38.0 15.3 163 8-172 550-746 (978)
23 PF08367 M16C_assoc: Peptidase 91.2 0.74 1.6E-05 37.8 6.4 111 7-119 92-220 (248)
24 KOG2019 Metalloendoprotease HM 76.6 72 0.0016 30.5 15.9 156 11-167 317-495 (998)
25 KOG2583 Ubiquinol cytochrome c 76.4 54 0.0012 28.9 13.3 106 57-169 312-421 (429)
26 KOG2019 Metalloendoprotease HM 74.7 56 0.0012 31.2 11.0 160 26-185 600-792 (998)
27 PF09851 SHOCT: Short C-termin 57.5 27 0.00059 18.5 3.6 26 77-102 5-30 (31)
28 PF01729 QRPTase_C: Quinolinat 57.3 14 0.00031 28.4 3.4 41 139-179 106-147 (169)
29 PRK05986 cob(I)alamin adenolsy 56.9 27 0.00057 27.6 4.9 69 115-185 101-174 (191)
30 PF12674 Zn_ribbon_2: Putative 53.1 27 0.00058 23.4 3.7 36 140-182 40-75 (81)
31 TIGR03654 L6_bact ribosomal pr 51.9 88 0.0019 24.2 7.0 52 20-72 56-111 (175)
32 KOG0961 Predicted Zn2+-depende 51.2 65 0.0014 30.8 6.9 110 62-172 636-760 (1022)
33 PF11116 DUF2624: Protein of u 51.0 26 0.00055 23.7 3.4 35 137-181 10-44 (85)
34 PF08494 DEAD_assoc: DEAD/H as 48.4 79 0.0017 24.7 6.4 41 19-69 27-67 (187)
35 TIGR03653 arch_L6P archaeal ri 48.3 82 0.0018 24.3 6.3 53 20-72 53-112 (170)
36 PRK05518 rpl6p 50S ribosomal p 47.9 78 0.0017 24.7 6.2 54 19-72 58-118 (180)
37 PRK08385 nicotinate-nucleotide 47.2 49 0.0011 27.7 5.3 41 139-179 208-251 (278)
38 PRK14836 undecaprenyl pyrophos 44.3 1.8E+02 0.004 24.0 8.1 157 3-181 58-234 (253)
39 PF04472 DUF552: Protein of un 43.9 83 0.0018 20.3 5.0 45 142-187 7-51 (73)
40 PRK05498 rplF 50S ribosomal pr 43.0 1.4E+02 0.0031 23.1 7.0 52 20-72 57-112 (178)
41 PRK05848 nicotinate-nucleotide 42.2 60 0.0013 27.1 5.1 41 139-179 208-249 (273)
42 PF00531 Death: Death domain; 42.1 53 0.0012 21.2 4.0 42 113-154 39-82 (83)
43 PF07521 RMMBL: RNA-metabolisi 41.5 30 0.00065 19.8 2.3 25 141-167 17-41 (43)
44 PTZ00179 60S ribosomal protein 40.4 1.2E+02 0.0026 23.8 6.2 54 19-72 59-119 (189)
45 PF07350 DUF1479: Protein of u 40.0 36 0.00078 30.2 3.5 96 91-189 4-104 (416)
46 PRK09016 quinolinate phosphori 39.4 68 0.0015 27.2 5.0 39 139-179 234-272 (296)
47 PRK06559 nicotinate-nucleotide 38.8 66 0.0014 27.2 4.8 39 139-179 223-261 (290)
48 PRK06978 nicotinate-nucleotide 38.5 70 0.0015 27.1 4.9 38 140-179 232-269 (294)
49 PRK14425 acylphosphatase; Prov 38.2 59 0.0013 22.3 3.7 38 45-82 28-66 (94)
50 TIGR00708 cobA cob(I)alamin ad 38.0 68 0.0015 24.9 4.4 69 115-185 83-156 (173)
51 KOG3460 Small nuclear ribonucl 37.3 13 0.00029 24.7 0.3 47 60-106 26-72 (91)
52 PRK07414 cob(I)yrinic acid a,c 36.7 55 0.0012 25.5 3.7 67 115-183 101-172 (178)
53 PRK14429 acylphosphatase; Prov 36.6 73 0.0016 21.6 4.0 38 45-82 24-62 (90)
54 PRK14420 acylphosphatase; Prov 36.2 78 0.0017 21.4 4.1 39 45-83 24-63 (91)
55 COG0157 NadC Nicotinate-nucleo 35.9 78 0.0017 26.5 4.7 41 139-179 214-254 (280)
56 PRK07896 nicotinate-nucleotide 35.1 95 0.0021 26.2 5.2 40 140-179 226-266 (289)
57 KOG0088 GTPase Rab21, small G 35.1 93 0.002 23.9 4.6 40 142-181 99-149 (218)
58 PRK14430 acylphosphatase; Prov 34.3 72 0.0016 21.8 3.7 36 45-80 26-62 (92)
59 TIGR01334 modD putative molybd 34.1 99 0.0021 25.9 5.1 40 140-179 215-255 (277)
60 PRK14440 acylphosphatase; Prov 33.9 76 0.0017 21.5 3.7 37 45-81 25-62 (90)
61 TIGR00055 uppS undecaprenyl di 33.3 2.6E+02 0.0057 22.7 9.3 111 4-131 44-169 (226)
62 PRK14445 acylphosphatase; Prov 33.2 92 0.002 21.1 4.1 37 45-81 26-63 (91)
63 CHL00140 rpl6 ribosomal protei 33.0 1.5E+02 0.0032 23.0 5.6 52 20-72 57-112 (178)
64 PRK06543 nicotinate-nucleotide 32.9 87 0.0019 26.3 4.6 39 139-179 219-257 (281)
65 PRK14431 acylphosphatase; Prov 32.6 90 0.002 21.1 3.9 38 45-82 24-61 (89)
66 PF10193 Telomere_reg-2: Telom 32.4 60 0.0013 23.2 3.1 67 71-141 41-109 (114)
67 TIGR01669 phage_XkdX phage unc 32.3 20 0.00042 21.1 0.5 11 166-176 30-40 (45)
68 PRK14834 undecaprenyl pyrophos 32.2 2.9E+02 0.0063 22.8 9.9 156 3-180 58-233 (249)
69 PRK14435 acylphosphatase; Prov 31.6 90 0.002 21.1 3.8 37 45-81 24-61 (90)
70 PRK14449 acylphosphatase; Prov 31.4 99 0.0022 20.9 4.0 38 46-83 26-64 (90)
71 PRK14444 acylphosphatase; Prov 30.8 90 0.0019 21.3 3.7 37 45-81 26-63 (92)
72 COG1054 Predicted sulfurtransf 30.8 92 0.002 26.4 4.3 130 49-179 33-194 (308)
73 PF06576 DUF1133: Protein of u 30.7 1.5E+02 0.0033 22.9 5.1 70 115-186 40-114 (176)
74 PRK06096 molybdenum transport 30.5 1.2E+02 0.0025 25.6 5.0 40 140-179 216-256 (284)
75 PRK06106 nicotinate-nucleotide 30.4 1.1E+02 0.0023 25.8 4.8 39 139-179 220-258 (281)
76 PRK07428 nicotinate-nucleotide 30.3 1.2E+02 0.0027 25.5 5.1 50 130-179 204-263 (288)
77 KOG4107 MP1 adaptor interactin 30.1 1.4E+02 0.003 20.9 4.4 47 38-84 6-52 (125)
78 PRK14840 undecaprenyl pyrophos 30.0 3.2E+02 0.0069 22.6 9.3 103 13-131 75-192 (250)
79 PRK14436 acylphosphatase; Prov 29.6 1E+02 0.0022 21.0 3.7 37 45-81 26-63 (91)
80 PRK14424 acylphosphatase; Prov 29.4 1E+02 0.0022 21.2 3.8 37 45-81 29-66 (94)
81 COG0588 GpmA Phosphoglycerate 29.1 1E+02 0.0022 24.9 4.1 49 152-219 169-217 (230)
82 PRK14446 acylphosphatase; Prov 29.0 1.2E+02 0.0027 20.5 4.1 37 45-81 24-61 (88)
83 PRK14451 acylphosphatase; Prov 28.9 1.1E+02 0.0023 20.8 3.8 37 45-81 25-62 (89)
84 COG3411 Ferredoxin [Energy pro 28.5 74 0.0016 20.2 2.6 23 159-181 23-45 (64)
85 PF00017 SH2: SH2 domain; Int 28.0 36 0.00079 21.8 1.3 16 164-179 2-17 (77)
86 PRK14427 acylphosphatase; Prov 27.5 1.3E+02 0.0029 20.5 4.1 39 45-83 28-67 (94)
87 PRK10240 undecaprenyl pyrophos 27.5 3.4E+02 0.0073 22.1 9.3 156 3-180 37-212 (229)
88 PRK14830 undecaprenyl pyrophos 27.2 3.6E+02 0.0078 22.3 9.7 157 2-180 65-241 (251)
89 PF00708 Acylphosphatase: Acyl 26.8 1.4E+02 0.003 20.1 4.1 38 45-82 26-64 (91)
90 PRK14448 acylphosphatase; Prov 26.7 1.2E+02 0.0026 20.6 3.7 37 45-81 24-61 (90)
91 PRK14447 acylphosphatase; Prov 26.5 1.3E+02 0.0029 20.5 4.0 37 45-81 26-64 (95)
92 PRK14428 acylphosphatase; Prov 26.5 1.2E+02 0.0026 21.0 3.7 37 45-81 30-67 (97)
93 TIGR03853 matur_matur probable 26.3 1.2E+02 0.0027 20.0 3.5 23 116-138 3-26 (77)
94 PRK14832 undecaprenyl pyrophos 26.0 3.8E+02 0.0082 22.2 9.6 157 3-181 62-238 (253)
95 PRK14438 acylphosphatase; Prov 26.0 1.3E+02 0.0029 20.4 3.8 37 45-81 25-62 (91)
96 PRK14422 acylphosphatase; Prov 25.3 1.4E+02 0.0031 20.3 3.9 38 45-82 28-66 (93)
97 PRK14442 acylphosphatase; Prov 25.0 1.4E+02 0.003 20.3 3.8 37 45-81 26-63 (91)
98 PRK05742 nicotinate-nucleotide 25.0 1.4E+02 0.0031 25.0 4.6 38 140-179 216-253 (277)
99 PRK00810 nifW nitrogenase stab 24.6 1.8E+02 0.0039 20.8 4.4 41 75-115 40-84 (113)
100 PF11149 DUF2924: Protein of u 24.4 2.6E+02 0.0055 20.8 5.3 47 134-180 3-64 (136)
101 PRK14423 acylphosphatase; Prov 24.0 1.5E+02 0.0033 20.1 3.9 37 45-81 27-64 (92)
102 PF14162 YozD: YozD-like prote 23.9 68 0.0015 19.4 1.7 34 115-148 12-45 (57)
103 PRK14443 acylphosphatase; Prov 23.7 1.5E+02 0.0032 20.3 3.7 38 45-82 26-64 (93)
104 PF10309 DUF2414: Protein of u 23.4 1.3E+02 0.0028 19.0 3.1 26 138-163 12-40 (62)
105 PRK14441 acylphosphatase; Prov 23.2 1.8E+02 0.0038 19.9 4.0 37 45-81 27-64 (93)
106 TIGR02110 PQQ_syn_pqqF coenzym 22.9 3.4E+02 0.0074 26.1 7.1 58 31-88 469-526 (696)
107 PF10369 ALS_ss_C: Small subun 22.8 1.1E+02 0.0024 19.9 2.9 26 55-80 31-56 (75)
108 PF02099 Josephin: Josephin; 22.7 52 0.0011 25.0 1.4 60 117-176 8-73 (157)
109 PRK14426 acylphosphatase; Prov 22.5 1.6E+02 0.0035 20.0 3.8 38 45-82 26-64 (92)
110 PRK14452 acylphosphatase; Prov 22.5 1.5E+02 0.0033 20.9 3.6 36 45-80 42-78 (107)
111 PRK14421 acylphosphatase; Prov 21.9 1.6E+02 0.0034 20.5 3.6 37 45-81 26-63 (99)
112 PF04444 Dioxygenase_N: Catech 21.7 2.2E+02 0.0048 18.6 4.1 33 74-106 9-41 (74)
113 PRK14450 acylphosphatase; Prov 21.7 1.8E+02 0.0038 19.7 3.8 37 45-81 24-62 (91)
114 PTZ00027 60S ribosomal protein 21.7 4E+02 0.0087 20.9 6.5 54 19-72 60-122 (190)
115 PRK07413 hypothetical protein; 21.5 2.8E+02 0.0061 24.5 5.8 68 115-184 111-183 (382)
116 smart00311 PWI PWI, domain in 21.4 2.4E+02 0.0052 18.2 5.5 38 119-157 30-67 (74)
117 COG5469 Predicted metal-bindin 21.1 1.8E+02 0.0039 21.5 3.8 25 161-185 86-111 (143)
118 KOG0368 Acetyl-CoA carboxylase 21.1 2.5E+02 0.0054 29.7 5.9 67 65-131 797-878 (2196)
119 cd08317 Death_ank Death domain 21.0 1.6E+02 0.0035 19.5 3.4 38 113-150 43-82 (84)
120 PF10557 Cullin_Nedd8: Cullin 20.8 2.1E+02 0.0046 18.0 3.9 31 74-104 26-57 (68)
121 PF10678 DUF2492: Protein of u 20.8 1.9E+02 0.0041 19.2 3.6 23 116-138 5-28 (78)
122 PF09568 RE_MjaI: MjaI restric 20.8 73 0.0016 24.6 1.9 46 132-184 60-105 (170)
123 PRK14433 acylphosphatase; Prov 20.8 1.9E+02 0.0042 19.4 3.8 37 45-81 23-60 (87)
124 cd00173 SH2 Src homology 2 dom 20.7 69 0.0015 21.2 1.6 16 164-179 3-18 (94)
125 PRK14135 recX recombination re 20.4 3.7E+02 0.008 22.0 6.2 50 92-142 210-259 (263)
126 cd01568 QPRTase_NadC Quinolina 20.4 2.2E+02 0.0047 23.7 4.8 51 129-179 188-247 (269)
No 1
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-41 Score=312.02 Aligned_cols=236 Identities=40% Similarity=0.711 Sum_probs=225.0
Q ss_pred CCCCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccEEEEeeeCceeEEEEeeccchHHHHHHHH
Q 026322 1 MFSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETI 80 (240)
Q Consensus 1 ~F~~Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~ll~~i 80 (240)
+|++||+.+.+.+.+|.+..+|.+++++.+|+.++.+.++|..|+|..||++++++.+.+|+.++|+||+||++.+++.+
T Consensus 528 ~f~~Pka~~~~~~~~p~~~~~~~~~~l~~l~~~~l~d~l~E~~Y~A~~aGl~~~~~~s~~G~~~~v~Gfnekl~~ll~~~ 607 (974)
T KOG0959|consen 528 KFNVPKAYTKFDFICPGATQSPLNSVLSTLYVRLLKDQLNEYLYPALLAGLTYSLSSSSKGVELRVSGFNEKLPLLLEKV 607 (974)
T ss_pred ccccchhheeeeecCcccccCHHHHHHHHHHHHHHHHHHhHHHHHHHhccceEEeeecCCceEEEEeccCcccHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCCChhHHHhhCCCCCHHHHHHHHHHHhhccee
Q 026322 81 FQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFL 160 (240)
Q Consensus 81 ~~~l~~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~e~l~~l~~it~edl~~f~~~~l~~~~~ 160 (240)
++.+.++.+++++|+.+|+.+.++++|...++||.+|.+++..++.+..|+.++++++++++|++|+..|+..++++.++
T Consensus 608 ~~~~~~f~~~~~rf~iike~~~~~~~n~~~~~p~~~a~~~~~lll~~~~W~~~e~~~al~~~~le~~~~F~~~~~~~~~~ 687 (974)
T KOG0959|consen 608 VQMMANFELDEDRFEIIKELLKRELRNHAFDNPYQLANDYLLLLLEESIWSKEELLEALDDVTLEDLESFISEFLQPFHL 687 (974)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhccccchHHHHHHhhcccHHHHHHHHHHHhhhhhe
Confidence 99999999999999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcCccceeEeCCCCeEEEEeCCCCCCCCCeEEEEEEEeCc
Q 026322 161 ECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCLVHYIQVQE 238 (240)
Q Consensus 161 ~~lv~GNi~~~~A~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~Ns~v~~y~Q~g~ 238 (240)
+++|+||++.++|+++++.+.+.+ ....|.+.|+.+.+....|++.+|.|.++.|+.. .|++|+|||+++|||+|.
T Consensus 688 e~~i~GN~te~~A~~l~~~v~d~l-~~~~~~~~p~~~~~~~~~~~~~lp~G~~~~~~~~-~n~~~~ns~i~~~~Q~~~ 763 (974)
T KOG0959|consen 688 ELLIHGNLTEKEALQLLKSVLDIL-KSAAPNSRPLFRSEHLPRREIQLPNGDYYFYRHL-LNKTDDNSCIEVYYQIGV 763 (974)
T ss_pred EEEEecCcchHHHHHHHHHHHhhh-hccCCCCccccccccCcccceeccCCceEEEEcc-cccCCCCceEEEEEEccc
Confidence 999999999999999999999999 3344447788888889999999999999987766 789999999999999975
No 2
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-35 Score=267.86 Aligned_cols=228 Identities=26% Similarity=0.435 Sum_probs=212.4
Q ss_pred CCCC-ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccEEEEeeeCceeEEEEeeccchHHHHHHH
Q 026322 1 MFST-PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLET 79 (240)
Q Consensus 1 ~F~~-Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~ll~~ 79 (240)
.|++ ||+.+.+.|++|++..||++.|+.+|++.++++.|.+..|+|..||+++++.++.+|+.|+++||+++++.+++.
T Consensus 520 ~F~~~PK~~v~~~irsp~~~~s~r~~Vl~~l~~~la~dal~~~~y~A~~aG~sfs~~~~~~Gl~ltisGft~~lp~L~~~ 599 (937)
T COG1025 520 YFAVEPKASVSLAIRSPHASRSPRNQVLTELYAYLANDALDKLSYQASLAGLSFSLAANSNGLDLTISGFTQRLPQLLRA 599 (937)
T ss_pred ccccCCcceeEEEEeCcccccCHHHHHHHHHHHHHHHHHHHhhhhHHHhcceEEEeecCCCceEEEeeccccchHHHHHH
Confidence 3887 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCCChhHHHhhCCCCCHHHHHHHHHHHhhcce
Q 026322 80 IFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTF 159 (240)
Q Consensus 80 i~~~l~~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~e~l~~l~~it~edl~~f~~~~l~~~~ 159 (240)
+++.+.++.+++++|+.+|+++.+.|+|.....||+++.+.+..++.+++|+.+|++++|++++++++.+|+..++++.+
T Consensus 600 ~l~~l~~~~~~~~~f~~~K~~~~~~~~~a~~~~p~~~~~~~l~~l~~~~~~s~~e~~~~l~~v~~~e~~~f~~~l~~~~~ 679 (937)
T COG1025 600 FLDGLFSLPVDEDRFEQAKSQLSEELKNALTGKPYRQALDGLTGLLQVPYWSREERRNALESVSVEEFAAFRDTLLNGVH 679 (937)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHhhhhhCCCCcCHHHHHHHhhhccHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeecCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcCccceeEeCCCCeEEEEeCCCCCCCCCeEEEEEEEeC
Q 026322 160 LECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCLVHYIQVQ 237 (240)
Q Consensus 160 ~~~lv~GNi~~~~A~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~Ns~v~~y~Q~g 237 (240)
+|.+|+||++.++|.++...+.+.+....+ ...+.+.+.+++|.+..++....++++.|+++++-.|.+
T Consensus 680 lE~lv~Gn~~~~da~~l~~~~~~~l~~~~s---------~~~~~~~~~~~~~~~~~~e~~~~~~~~an~~i~~~~~~~ 748 (937)
T COG1025 680 LEMLVLGNLTEADATNLAETLQKKLPAIGS---------TWYRNPSVYLLKGGTRIFETVGGESDSANAAILYPQQYD 748 (937)
T ss_pred eeeeeeccchHHHHHHHHHHHHhhhcccCC---------cccCCCceeccCCCeeEeeeccCCcccccceeEeccccc
Confidence 999999999999999999999887765433 224455677888888888888888888888888777665
No 3
>PRK15101 protease3; Provisional
Probab=99.97 E-value=4.3e-29 Score=240.15 Aligned_cols=226 Identities=17% Similarity=0.291 Sum_probs=197.8
Q ss_pred CC-CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccEEEEeeeCceeEEEEeeccchHHHHHHH
Q 026322 1 MF-STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLET 79 (240)
Q Consensus 1 ~F-~~Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~ll~~ 79 (240)
+| ++||+.+.+.|.+|...+++++.+++.|++.++++.+++..|.|.+||++++++ +.+|+.++++||++|++.+++.
T Consensus 541 ~f~~~Pk~~i~~~~~~~~~~~~~~~~~l~~L~~~ll~~~l~e~~y~a~~aG~~~~~~-~~~g~~i~v~g~s~~l~~ll~~ 619 (961)
T PRK15101 541 YFADEPKADISLVLRNPKAMDSARNQVLFALNDYLAGLALDQLSNQASVGGISFSTN-ANNGLMVNANGYTQRLPQLLQA 619 (961)
T ss_pred ccccCCCEEEEEEEeCCCccCCHHHHHHHHHHHHHHHHHHHHHhchHHhcCcEEEEc-cCCCEEEEEEecChhHHHHHHH
Confidence 37 599999999999999999999999999999999999999999999999999999 7899999999999999999999
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCCChhHHHhhCCCCCHHHHHHHHHHHhhcce
Q 026322 80 IFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTF 159 (240)
Q Consensus 80 i~~~l~~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~e~l~~l~~it~edl~~f~~~~l~~~~ 159 (240)
+++.+.++.+++++|++.|+.++++++|...+.|+.++...+..+...++|++.+..++|+++|++|+++|+++++.+.+
T Consensus 620 l~d~l~~~~~~~~~fe~~k~~~~~~l~~~~~~~~~~~~~~~~~~~~~~py~~~~~~~~~l~~it~edl~~f~~~~~~~~~ 699 (961)
T PRK15101 620 LLEGYFSFTPTEEQLAQAKSWYREQLDSAEKGKAYEQAIMPAQMLSQVPYFERDERRKLLPSITLKDVLAYRDALLSGAT 699 (961)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhcccCcHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhce
Confidence 99999999999999999999999999999888899999988777777778878889999999999999999999999999
Q ss_pred eeEEeecCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcCccceeEeCCCCeEEEEeCCCCCCCCCeEEEEEEEeCc
Q 026322 160 LECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCLVHYIQVQE 238 (240)
Q Consensus 160 ~~~lv~GNi~~~~A~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~Ns~v~~y~Q~g~ 238 (240)
++++|+||+++++|+++++.+.+.+...+. .....+.+.++++....+... . ..+.|+++..|+|+|.
T Consensus 700 ~~~~v~GNi~~~ea~~l~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~g~ 767 (961)
T PRK15101 700 PEFLVVGNLTEEQVTTLARDVQKQLGADGT---------EWWRGKDVVVDKKQSVNFEKA-G-SSTDSALAAVYVPTGY 767 (961)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHhccCCc---------ccccccceEeCCCCeEEEecC-C-CCCCCeEEEEEEeCCC
Confidence 999999999999999999999888864321 111223345666655555432 2 2355888899999885
No 4
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.44 E-value=2e-11 Score=112.70 Aligned_cols=183 Identities=11% Similarity=0.006 Sum_probs=152.6
Q ss_pred CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh------hhhcccccccEEEEeeeCceeEEEEeeccchHHHH
Q 026322 3 STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNE------YAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRIL 76 (240)
Q Consensus 3 ~~Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~e------~~y~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~l 76 (240)
..|.+.+.+.+..+...+.+...+++.++..|+-..... +.-..+..|-+++.+.+.+...+.+...++++...
T Consensus 18 ~~p~vav~l~v~aGS~~Ep~~~~GLAHfLEHMLFkGT~~~~~~~~i~~~le~lGG~lNA~Ts~d~T~y~~~v~~~~l~~a 97 (696)
T TIGR02110 18 DAKRAAALLRVAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVNATTLERTTAFFFELPAAALAAG 97 (696)
T ss_pred CCCEEEEEEEEeeccCCCCCCCCcHHHHHHHHHhcCCCCCCcHHHHHHHHHHhCCeEEEEEcCCeEEEEEEecHHHHHHH
Confidence 368999999999999889899999999999999664432 22223334668888888889999999999999999
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccC-CCCC-----hhHHHhhCCCCCHHHHHHH
Q 026322 77 LETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD-QTWP-----WMEELEVLPHLEAEDLAKF 150 (240)
Q Consensus 77 l~~i~~~l~~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~-~~~~-----~~e~l~~l~~it~edl~~f 150 (240)
++.+.+.+.++.+++++|++.|+.++.+++....+ |...+...+...++. ++|. ..+-++.+..++.+|+++|
T Consensus 98 L~lLaD~l~~P~f~eeeierEr~vvl~Ei~~~~dd-p~~~~~~~l~~~l~~~HPy~~~~iGt~esL~~it~~t~edL~~F 176 (696)
T TIGR02110 98 LARLCDMLARPLLTAEDQQREREVLEAEYIAWQND-ADTLREAALLDALQAGHPLRRFHAGSRDSLALPNTAFQQALRDF 176 (696)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHcCCCCCCCCCCCCCHHHHhCcccchHHHHHHH
Confidence 99999999999999999999999999999987655 889999988888874 3444 3444455445669999999
Q ss_pred HHHHhhcceeeEEeecCCChHHHHHHHHHHHHhhcC
Q 026322 151 VPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFK 186 (240)
Q Consensus 151 ~~~~l~~~~~~~lv~GNi~~~~A~~l~~~~~~~l~~ 186 (240)
+++++...++.+.|.||++.+++.++++.....++.
T Consensus 177 ~~~~Y~p~NmvLvIvGdvs~eel~~l~e~~f~~~~~ 212 (696)
T TIGR02110 177 HRRHYQAGNMQLWLQGPQSLDELEQLAARFGASLAA 212 (696)
T ss_pred HHHhcchhcEEEEEEeCCCHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999887766643
No 5
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=99.42 E-value=5.9e-12 Score=111.86 Aligned_cols=182 Identities=11% Similarity=0.069 Sum_probs=155.1
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhhcccccccEEEEeeeCceeEEEEeeccchHHHHHH
Q 026322 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN-----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLE 78 (240)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~-----e~~y~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~ll~ 78 (240)
.|.+.+.+.+..+...+++...+++.++..++-.... +....-...|-..+...+.......++-.+++++..++
T Consensus 36 ~~~vs~~~~v~~Gs~~e~~~~~G~AH~lehm~fkgt~~~~~~~i~~~~~~~G~~~na~ts~d~t~y~~~~l~~~~~~~l~ 115 (438)
T COG0612 36 APTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLPSAELAEAFEKLGGQLNAFTSFDYTVYYLSVLPDNLDKALD 115 (438)
T ss_pred CCEEEEEEEEeecccCCCCCcccHHHHHHHHHccCCCCCChHHHHHHHHHhcCeeeccccchhhhhhhhhchhhhHHHHH
Confidence 6889999999988888999999999999999966532 34445555566666665555555555557899999999
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccC-CCCC--hhHHHhhCCCCCHHHHHHHHHHHh
Q 026322 79 TIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD-QTWP--WMEELEVLPHLEAEDLAKFVPMML 155 (240)
Q Consensus 79 ~i~~~l~~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~-~~~~--~~e~l~~l~~it~edl~~f~~~~l 155 (240)
.+.+.+.++.++++.|++.|..++.+++-...+ |...+...+...++. +++. +....+.++++|.+|+++|+++++
T Consensus 116 llad~l~~p~f~~~~~e~Ek~vil~ei~~~~d~-p~~~~~~~l~~~~~~~~p~~~~~~G~~e~I~~it~~dl~~f~~k~Y 194 (438)
T COG0612 116 LLADILLNPTFDEEEVEREKGVILEEIRMRQDD-PDDLAFERLLEALYGNHPLGRPILGTEESIEAITREDLKDFYQKWY 194 (438)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC-chHHHHHHHHHHhhccCCCCCCCCCCHHHHHhCCHHHHHHHHHHhc
Confidence 999999999999999999999999999988887 999999999888886 4543 456789999999999999999999
Q ss_pred hcceeeEEeecCCChHHHHHHHHHHHHhhcC
Q 026322 156 SRTFLECYIAGNIESNEAGSIIQYIEDVFFK 186 (240)
Q Consensus 156 ~~~~~~~lv~GNi~~~~A~~l~~~~~~~l~~ 186 (240)
.+.++.+.|+||++.+++..+++.....++.
T Consensus 195 ~p~n~~l~vvGdi~~~~v~~~~~~~f~~~~~ 225 (438)
T COG0612 195 QPDNMVLVVVGDVDAEEVVELIEKYFGDLPG 225 (438)
T ss_pred CcCceEEEEecCCCHHHHHHHHHHHHccCCc
Confidence 9999999999999999999999999888875
No 6
>PRK15101 protease3; Provisional
Probab=99.10 E-value=2e-09 Score=104.47 Aligned_cols=183 Identities=11% Similarity=0.021 Sum_probs=149.0
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh----hhhcc--cccccEEEEeeeCceeEEEEeeccchHHHHH
Q 026322 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNE----YAYYA--QVAGLDYGINHTESGFEVTVVGYNHKLRILL 77 (240)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~e----~~y~a--~~agl~~~~~~~~~gi~l~v~G~s~kl~~ll 77 (240)
.|++.+.+.+..+...+.+...+++.++..|+-..... ..+.. +..|-+.+.+.+.+.....++..++.++..+
T Consensus 63 ~~~~~~~l~v~~Gs~~ep~~~~GlAHflEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA~T~~d~T~y~~~~~~~~l~~aL 142 (961)
T PRK15101 63 AVKSLAALALPVGSLEDPDAQQGLAHYLEHMVLMGSKKYPQPDSLAEFLKKHGGSHNASTASYRTAFYLEVENDALPPAV 142 (961)
T ss_pred CcceeEEEEeCcCCCCCCCCCCchHHHHHHHHhcCCccCCCcchHHHHHHHhCCCccceECCCceEEEEEcCHHHHHHHH
Confidence 58899999999998888888899999999998554321 12222 3345567777777788888999999999999
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccC-CCCC--hhHHHhhCCCC----CHHHHHHH
Q 026322 78 ETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD-QTWP--WMEELEVLPHL----EAEDLAKF 150 (240)
Q Consensus 78 ~~i~~~l~~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~-~~~~--~~e~l~~l~~i----t~edl~~f 150 (240)
..+.+.+.+|.++++.+++.|..+..+++....+ |...+...+...+++ ++|+ .....+.|+.+ +.+++++|
T Consensus 143 ~~~ad~~~~P~f~~~~~erE~~~v~~E~~~~~~~-~~~~~~~~~~~~~~~~hp~~~~~~G~~etl~~~~~~~~~~~L~~f 221 (961)
T PRK15101 143 DRLADAIAEPLLDPKNADRERNAVNAELTMARSR-DGMRMAQVSAETINPAHPGSRFSGGNLETLSDKPGSKLQDALVDF 221 (961)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHhhCCCCCCcccCCCCCHHHhhcCCchHHHHHHHHH
Confidence 9999999999999999999999999999877655 877888877777764 4444 23445666665 79999999
Q ss_pred HHHHhhcceeeEEeecCCChHHHHHHHHHHHHhhcCC
Q 026322 151 VPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKG 187 (240)
Q Consensus 151 ~~~~l~~~~~~~lv~GNi~~~~A~~l~~~~~~~l~~~ 187 (240)
+++++.+.++.+.|+||++.+++.++++.....++..
T Consensus 222 ~~~~Y~p~nm~lvv~G~~~~~~l~~~~~~~F~~~~~~ 258 (961)
T PRK15101 222 YQRYYSANLMKAVIYSNQPLPELAKLAADTFGRVPNK 258 (961)
T ss_pred HHHhCcccceEEEEEcCCCHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999999998887777543
No 7
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=98.79 E-value=1e-07 Score=72.13 Aligned_cols=124 Identities=15% Similarity=0.159 Sum_probs=106.9
Q ss_pred CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhh-----hhhhhcccccccEEEEeeeCceeEEEEeeccchHHHHH
Q 026322 3 STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYL-----NEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILL 77 (240)
Q Consensus 3 ~~Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l-----~e~~y~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~ll 77 (240)
..|.+.+.+.|..+...+++.+.+++.|+..++...- .+..-.....|.+++...+.+.+.+.+++.+++++.++
T Consensus 9 ~~~~~~~~l~~~~Gs~~e~~~~~G~a~ll~~l~~~gs~~~~~~~l~~~l~~~G~~~~~~t~~d~t~~~~~~~~~~~~~~l 88 (149)
T PF00675_consen 9 GSPVVSVSLVFKAGSRYEPPGKPGLAHLLEHLLFRGSKKYSSDELQEELESLGASFNASTSRDSTSYSASVLSEDLEKAL 88 (149)
T ss_dssp TSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSBHHHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHH
T ss_pred CCCEEEEEEEEeeccCCCCCCCCchhhhhhhhcccccchhhhhhhHHHhhhhccccceEecccceEEEEEEecccchhHH
Confidence 4699999999999999999999999999999886542 22333334467888999899999999999999999999
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccC
Q 026322 78 ETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD 127 (240)
Q Consensus 78 ~~i~~~l~~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~ 127 (240)
+.+.+.+.+|.++++.|++.|..++.+++....+ |...+...+...++.
T Consensus 89 ~~l~~~~~~P~f~~~~~~~~r~~~~~ei~~~~~~-~~~~~~~~l~~~~f~ 137 (149)
T PF00675_consen 89 ELLADMLFNPSFDEEEFEREREQILQEIEEIKEN-PQELAFEKLHSAAFR 137 (149)
T ss_dssp HHHHHHHHSBGGCHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999988766 889999988888876
No 8
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=8.6e-07 Score=75.25 Aligned_cols=181 Identities=8% Similarity=0.053 Sum_probs=145.3
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhccc-----ccccEEEEeeeCceeEEEEeeccchHHHHHH
Q 026322 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQ-----VAGLDYGINHTESGFEVTVVGYNHKLRILLE 78 (240)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~e~~y~a~-----~agl~~~~~~~~~gi~l~v~G~s~kl~~ll~ 78 (240)
.+-+.|-+-|..+..++++++.+.+.++-.|.-.......-.|. --|...+-+.+...-..-+..++.++|..++
T Consensus 52 a~TATVGVwidaGSR~EnekNNG~ahFLEhlaFKGT~~Rs~~alElEieniGahLNAytSReqT~yyakal~~dv~kavd 131 (467)
T KOG0960|consen 52 ASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQAALELEIENIGAHLNAYTSREQTVYYAKALSKDVPKAVD 131 (467)
T ss_pred CcceEEEEEeccCccccccccccHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHhcccccccceeeehhhccccchHHHH
Confidence 46678889999999999999999999998876443332211111 1234445555566778889999999999999
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCC---CChhHHHhhCCCCCHHHHHHHHHHHh
Q 026322 79 TIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQT---WPWMEELEVLPHLEAEDLAKFVPMML 155 (240)
Q Consensus 79 ~i~~~l~~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~~---~~~~e~l~~l~~it~edl~~f~~~~l 155 (240)
.+.+.+++-++++..+++-|.-++|+.+..... --....+.+...-+++. .+...-.+.+++|+.+|+++|++..+
T Consensus 132 iLaDIlqns~L~~s~IerER~vILrEmqevd~~-~~eVVfdhLHatafQgtPL~~tilGp~enI~si~r~DL~~yi~thY 210 (467)
T KOG0960|consen 132 ILADILQNSKLEESAIERERDVILREMQEVDKN-HQEVVFDHLHATAFQGTPLGRTILGPSENIKSISRADLKDYINTHY 210 (467)
T ss_pred HHHHHHHhCccchhHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHhcCCcccccccChhhhhhhhhHHHHHHHHHhcc
Confidence 999999999999999999999999999988776 33666777766666542 34566788999999999999999999
Q ss_pred hcceeeEEeecCCChHHHHHHHHHHHHhhc
Q 026322 156 SRTFLECYIAGNIESNEAGSIIQYIEDVFF 185 (240)
Q Consensus 156 ~~~~~~~lv~GNi~~~~A~~l~~~~~~~l~ 185 (240)
...++.+...|+++-++..++++.....+.
T Consensus 211 ~~~RmVlaaaGgV~He~lv~la~k~fg~~~ 240 (467)
T KOG0960|consen 211 KASRMVLAAAGGVKHEELVKLAEKYFGDLS 240 (467)
T ss_pred cCccEEEEecCCcCHHHHHHHHHHHcCCCc
Confidence 999999999999999999999888766544
No 9
>PTZ00432 falcilysin; Provisional
Probab=98.39 E-value=4.3e-06 Score=82.12 Aligned_cols=176 Identities=11% Similarity=0.085 Sum_probs=129.5
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh-----hhhcccccccE--EEEeeeCceeEEEEeeccch-HHHH
Q 026322 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNE-----YAYYAQVAGLD--YGINHTESGFEVTVVGYNHK-LRIL 76 (240)
Q Consensus 5 Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~e-----~~y~a~~agl~--~~~~~~~~gi~l~v~G~s~k-l~~l 76 (240)
|-..+.+.+++|.. ...+++.++..++-..-.. ......-.|++ .+...+.......+...+++ +..+
T Consensus 114 ~~~~f~i~f~T~~~----d~~G~aH~LEH~~f~GS~k~p~~~~~~~l~~~gl~~~lNA~T~~D~T~Y~~~~~~e~d~~~~ 189 (1119)
T PTZ00432 114 KEMCFDFYVPTPPH----NDKGIPHILEHSVLSGSKKYNYKDSFSLLVQGGFNSFLNAYTFKDRTSYLFASTNEKDFYNT 189 (1119)
T ss_pred ceeEEEEEecCCCC----CCcchhHHHHHHHhCCCCCCCcccHHHHHHhcCcCCCccccCCCCceEEEeccCCHHHHHHH
Confidence 35666777887752 3368888888888554322 22222223333 35555566788888888874 9999
Q ss_pred HHHHHHHhhcCCCChhhH--HH---------H--------------------HHHHHHHHhhhcccChHHHHHHHHHHhc
Q 026322 77 LETIFQKIAQFKVKPDRF--SV---------I--------------------KEMVTKEYHNNKFLQPFQLAMYYCSLIL 125 (240)
Q Consensus 77 l~~i~~~l~~~~~~~~~F--~~---------~--------------------k~~l~~~~~n~~~~~p~~~a~~~~~~ll 125 (240)
+..+++.+.+|.++++.| .+ . |.-+..+++....+ |...+...+...+
T Consensus 190 ldv~~d~v~~P~~~~~~~~f~qEgwh~E~~~~~~~~~~~~e~~~~~~~~l~~kgVV~~Emk~~~~~-p~~~~~~~~~~~l 268 (1119)
T PTZ00432 190 ADVYMDSVFQPNILEDKDIFKQEGWHYKVTKLKDDEKNADELGNVHDRHVSYSGIVYSEMKKRFSD-PLSFGYSVIYQNL 268 (1119)
T ss_pred HHHHHHHHhCcCcccccchhhhhhhhccccccccccccccccccccccccchhhHHHHHHHHhhCC-HHHHHHHHHHHHH
Confidence 999999999999987753 32 1 33466677766555 9999999887666
Q ss_pred cCCCCC--hhHHHhhCCCCCHHHHHHHHHHHhhcceeeEEeecCCChHHHHHHHHHHHHhhc
Q 026322 126 QDQTWP--WMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFF 185 (240)
Q Consensus 126 ~~~~~~--~~e~l~~l~~it~edl~~f~~~~l~~~~~~~lv~GNi~~~~A~~l~~~~~~~l~ 185 (240)
+.++|. .-...+.|..+|.|++++|+++++.+.++.+.++||++.++..++++.....++
T Consensus 269 f~~pY~~~~~G~~~~I~~lt~e~l~~Fh~~~Y~P~N~~l~v~Gdid~~~~l~~l~~~f~~~~ 330 (1119)
T PTZ00432 269 FSNVYKYDSGGDPKDIVELTYEELVEFYKTYYGPKTATVYFYGPNDVTERLEFVDNYLTKHP 330 (1119)
T ss_pred hCCCCCCCCCCChHhhccCCHHHHHHHHHHhcCccceEEEEEcCCCHHHHHHHHHHHHhhcc
Confidence 665555 346788999999999999999999999999999999999999999988765554
No 10
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=7.3e-05 Score=63.88 Aligned_cols=180 Identities=11% Similarity=0.053 Sum_probs=141.9
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhhcccccccEEEEeeeCceeEEEEeeccchHHHHHHH
Q 026322 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN-----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLET 79 (240)
Q Consensus 5 Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~-----e~~y~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~ll~~ 79 (240)
|-+.+-+.|.++..++.+.-.+.+.++-.+.-.+.. |..-..+.-|=.++.+.+.+.+...++.+++.++.+++.
T Consensus 44 ~f~~vGlyIdsGsrYE~~~~~GisH~lerLAF~ST~~~~~~ei~~~LE~~GGn~~cqsSRetm~Yaas~~~~~v~sm~~l 123 (472)
T KOG2067|consen 44 QFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERFSSKEILAELEKLGGNCDCQSSRETMMYAASADSDGVDSMVEL 123 (472)
T ss_pred CceEEEEEEecCccccCcCcccHHHHHHHHhhccccCCcHHHHHHHHHHhCCcccccccHhhhHHHHHhhhcccHHHHHH
Confidence 456788889999988888888888888777644322 333333444557888888888899999999999999999
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCC-CCChhH--HHhhCCCCCHHHHHHHHHHHhh
Q 026322 80 IFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TWPWME--ELEVLPHLEAEDLAKFVPMMLS 156 (240)
Q Consensus 80 i~~~l~~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~-~~~~~e--~l~~l~~it~edl~~f~~~~l~ 156 (240)
+.+.+.+|++++++.+..|..+.-+++...++ |--...+.+...-+.+ .....- -.+.+.+|+.+.+.+|.+.++.
T Consensus 124 LadtV~~P~~~d~ev~~~~~~v~~E~~el~~~-Pe~lL~e~iH~Aay~~ntlg~pl~cp~~~i~~I~~~~l~~yl~~~yt 202 (472)
T KOG2067|consen 124 LADTVLNPKFTDQEVEEARRAVKYEIEELWMR-PEPLLTEMIHSAAYSGNTLGLPLLCPEENIDKINREVLEEYLKYFYT 202 (472)
T ss_pred HHHHHhcccccHHHHHHHHHhhhheccccccC-chhhHHHHHHHHHhccCcccccccCChhhhhhhhHHHHHHHHHhcCC
Confidence 99999999999999999999988888887777 7555666555555543 222222 2467889999999999999999
Q ss_pred cceeeEEeecCCChHHHHHHHHHHHHhhcC
Q 026322 157 RTFLECYIAGNIESNEAGSIIQYIEDVFFK 186 (240)
Q Consensus 157 ~~~~~~lv~GNi~~~~A~~l~~~~~~~l~~ 186 (240)
+.++.+-.+| +.-+++.++++.+..-++.
T Consensus 203 p~rmVlA~vG-V~heelv~~~~~~~~~~~s 231 (472)
T KOG2067|consen 203 PERMVLAGVG-VEHEELVEIAEKLLGDLPS 231 (472)
T ss_pred hhheEeeecC-CCHHHHHHHHHHHhccCCc
Confidence 9999999898 7999999999888777765
No 11
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=97.70 E-value=0.00025 Score=54.39 Aligned_cols=47 Identities=21% Similarity=0.310 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHHhhcceeeEEeecCCChHHHHHHHHHHHHhhcCC
Q 026322 141 HLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKG 187 (240)
Q Consensus 141 ~it~edl~~f~~~~l~~~~~~~lv~GNi~~~~A~~l~~~~~~~l~~~ 187 (240)
++|.+++++|+++++.+.++.++++||++.+++.++++.....++..
T Consensus 1 ~it~e~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~~~~l~~~ 47 (184)
T PF05193_consen 1 NITLEDLRAFYKKFYRPSNMTLVIVGDIDPDELEKLIEKYFGSLPKS 47 (184)
T ss_dssp C--HHHHHHHHHHHSSGGGEEEEEEESSGHHHHHHHHHHHHTTSSHS
T ss_pred CCCHHHHHHHHHHhcCccceEEEEEcCccHHHHHHHHHhhhhhhccc
Confidence 58999999999999999999999999999999999998888777643
No 12
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=97.51 E-value=0.0068 Score=52.11 Aligned_cols=173 Identities=10% Similarity=0.069 Sum_probs=133.2
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh-----hhhcccccccEEEEeeeCceeEEEEeeccchHHHHHH
Q 026322 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNE-----YAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLE 78 (240)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~e-----~~y~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~ll~ 78 (240)
.|...+.+.|+.+.-+++..+.++..|+........++ .....+.-|=.++...+.+-|.+++.-..|.++..+.
T Consensus 41 ~~is~l~l~~~AGSRYe~~~~~G~sHllr~f~g~~Tq~~sal~ivr~se~~GG~Lss~~tRe~~~~tvt~lrd~~~~~l~ 120 (429)
T KOG2583|consen 41 TAISSLSLAFRAGSRYEPADQQGLSHLLRNFVGRDTQERSALKIVRESEQLGGTLSSTATRELIGLTVTFLRDDLEYYLS 120 (429)
T ss_pred CcceEEEEEEecCccCCccccccHHHHHHHhcccCccccchhhhhhhhHhhCceeeeeeecceEEEEEEEecccHHHHHH
Confidence 68899999999999999999999999998887665554 4455566677788888888999999999999999999
Q ss_pred HHHHHhhcCCCChhhHHHHH-HHHHHHHhhhcccChHHHHHHHHHHhccCCCCChhHHH--hhCCCCCHHHHHHHHHHHh
Q 026322 79 TIFQKIAQFKVKPDRFSVIK-EMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEEL--EVLPHLEAEDLAKFVPMML 155 (240)
Q Consensus 79 ~i~~~l~~~~~~~~~F~~~k-~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~e~l--~~l~~it~edl~~f~~~~l 155 (240)
.+.+.+..+.+.|=+.+... .++..++ . .+.|+.++++.+...-+.+.....=.. -.+.+++.+|+.+|.++.|
T Consensus 121 ~L~~V~~~paFkPwEl~D~~~~ti~~~l--~-~~t~~~~a~e~lH~aAfRngLgnslY~p~~~vg~vss~eL~~Fa~k~f 197 (429)
T KOG2583|consen 121 LLGDVLDAPAFKPWELEDVVLATIDADL--A-YQTPYTIAIEQLHAAAFRNGLGNSLYSPGYQVGSVSSSELKDFAAKHF 197 (429)
T ss_pred HHHHhhcccCcCchhhhhhhhhhhHHHh--h-hcChHHHHHHHHHHHHHhcccCCcccCCcccccCccHHHHHHHHHHHh
Confidence 99999999888876666655 3333322 2 334999999988777765432222211 2478899999999999999
Q ss_pred hcceeeEEeecCCChHHHHHHHHHH
Q 026322 156 SRTFLECYIAGNIESNEAGSIIQYI 180 (240)
Q Consensus 156 ~~~~~~~lv~GNi~~~~A~~l~~~~ 180 (240)
...++.+.-. |++-++...+.+..
T Consensus 198 v~gn~~lvg~-nvd~~~L~~~~~~~ 221 (429)
T KOG2583|consen 198 VKGNAVLVGV-NVDHDDLKQFADEY 221 (429)
T ss_pred hccceEEEec-CCChHHHHHHHHHh
Confidence 8877765544 57888888888776
No 13
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0027 Score=54.58 Aligned_cols=145 Identities=13% Similarity=0.174 Sum_probs=103.7
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhcccccccEEEEeeeCce-eEEEEeeccchHHHHHHHHHHHhhcC--CCChhhHHHH
Q 026322 21 SPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQKIAQF--KVKPDRFSVI 97 (240)
Q Consensus 21 s~~~~~l~~L~~~ll~~~l~e~~y~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i~~~l~~~--~~~~~~F~~~ 97 (240)
.|.+-+..+||..+++.+- ..|.|. .|+-+.++.| +.|..+.--+..++.++.+.+.|.+. .+++++.+++
T Consensus 301 GPGKGMySrLY~~vLNry~--wv~sct----Afnhsy~DtGlfgi~~s~~P~~a~~aveli~~e~~~~~~~v~~~el~RA 374 (472)
T KOG2067|consen 301 GPGKGMYSRLYLNVLNRYH--WVYSCT----AFNHSYSDTGLFGIYASAPPQAANDAVELIAKEMINMAGGVTQEELERA 374 (472)
T ss_pred CCCcchHHHHHHHHHhhhH--HHHHhh----hhhccccCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 5566677777777777642 233322 2334445666 57888888888999999999998775 5899999999
Q ss_pred HHHHHHHH-hhhcccChHHHHHHHHHHhcc-CCCCChhHHHhhCCCCCHHHHHHHHHHHhhcceeeEEeecCCChHHHH
Q 026322 98 KEMVTKEY-HNNKFLQPFQLAMYYCSLILQ-DQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAG 174 (240)
Q Consensus 98 k~~l~~~~-~n~~~~~p~~~a~~~~~~ll~-~~~~~~~e~l~~l~~it~edl~~f~~~~l~~~~~~~lv~GNi~~~~A~ 174 (240)
|.++...+ -|.... |. .+.+.-.++|- ...-.++|.++.++++|.+|+.++..+++.. ...+-..||++.--..
T Consensus 375 K~qlkS~LlMNLESR-~V-~~EDvGRQVL~~g~rk~p~e~~~~Ie~lt~~DI~rva~kvlt~-~p~va~~Gd~~~lpt~ 450 (472)
T KOG2067|consen 375 KTQLKSMLLMNLESR-PV-AFEDVGRQVLTTGERKPPDEFIKKIEQLTPSDISRVASKVLTG-KPSVAAFGDGTGLPTY 450 (472)
T ss_pred HHHHHHHHHhccccc-ch-hHHHHhHHHHhccCcCCHHHHHHHHHhcCHHHHHHHHHHHhcC-CceeccCCcccCCcch
Confidence 99998885 444433 63 34455555555 4456789999999999999999999999976 4556667887754333
No 14
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=96.90 E-value=0.014 Score=51.96 Aligned_cols=98 Identities=16% Similarity=0.147 Sum_probs=80.5
Q ss_pred chHHHHHHHHHHHhhcCC---CChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccC-CCCChhHHHhhCCCCCHHH
Q 026322 71 HKLRILLETIFQKIAQFK---VKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD-QTWPWMEELEVLPHLEAED 146 (240)
Q Consensus 71 ~kl~~ll~~i~~~l~~~~---~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~-~~~~~~e~l~~l~~it~ed 146 (240)
++....+..+++.+.... +++++++..|..+...+-..... |...+..+....... +.-+.++..+.++.+|.+|
T Consensus 331 ~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~k~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~d 409 (438)
T COG0612 331 EKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLLSLDS-PSSIAELLGQYLLLGGSLITLEELLERIEAVTLED 409 (438)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhccCC-HHHHHHHHHHHHHhcCCccCHHHHHHHHHhcCHHH
Confidence 566777777777766654 88999999998888888766555 888888888877774 4567899999999999999
Q ss_pred HHHHHHHHhhcceeeEEeecCCC
Q 026322 147 LAKFVPMMLSRTFLECYIAGNIE 169 (240)
Q Consensus 147 l~~f~~~~l~~~~~~~lv~GNi~ 169 (240)
+.++.++++......+.+.|+..
T Consensus 410 v~~~a~~~~~~~~~~~~~~~p~~ 432 (438)
T COG0612 410 VNAVAKKLLAPENLTIVVLGPEK 432 (438)
T ss_pred HHHHHHHhcCCCCcEEEEEcccc
Confidence 99999999998888888888754
No 15
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.069 Score=51.06 Aligned_cols=184 Identities=13% Similarity=0.100 Sum_probs=129.6
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh------hhhhcccccccEEEEeeeCceeEEEEeeccchHHHHH
Q 026322 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN------EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILL 77 (240)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~------e~~y~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~ll 77 (240)
.||+...+.+..+...+.....+|+...--|+--.-. ++.+--+.-|=+++.+...+....-+.--++.+...+
T Consensus 43 a~ks~aAL~V~vGs~~DP~e~~GLAHflEHmlfmGseKYP~~~~f~~fLskhgGs~NA~T~~~~T~fyFeV~~~al~~AL 122 (937)
T COG1025 43 ADKSSAALVVPVGSFDDPEEYPGLAHFLEHMLFMGSEKYPDEGGFSEFLSKHGGSHNASTAGERTAFYFEVENDALEGAL 122 (937)
T ss_pred CCccceeEEeecCCCCChhhcccHHHHHHHHHHhcCccCCCccchHHHHHHcCCccccccCCCceeEEEEecHHHHHHHH
Confidence 4677777777777754444558888888777752211 1111112223344444444455555666688999999
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccC--CCCCh--hHHHhhCCC----CCHHHHHH
Q 026322 78 ETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD--QTWPW--MEELEVLPH----LEAEDLAK 149 (240)
Q Consensus 78 ~~i~~~l~~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~--~~~~~--~e~l~~l~~----it~edl~~ 149 (240)
+.+++.+.+|-++++.-++-+..+-.++.....+...+ +..+..++.+ ++++. ..-++.|.. ...++++.
T Consensus 123 DrFa~ff~~PLf~~e~~dRE~~AV~sE~~~~~~~D~~R--~~~~~~~~~np~HP~srFs~GN~~TL~~~p~~~v~~el~e 200 (937)
T COG1025 123 DRFADFFIEPLFNKEALDRERNAVNSEFTMNLTSDGWR--MYQVQALTANPGHPLSKFSTGNLETLSDKPGLVVQQELKE 200 (937)
T ss_pred HHHHHHHhccccChHHHHHHHHHHHHHHhcCcCchHHH--HHHHHHhhcCCCCCccccCCCChhhhccCCCchHHHHHHH
Confidence 99999999999999999999999999998877663322 3333444443 33332 233455544 56799999
Q ss_pred HHHHHhhcceeeEEeecCCChHHHHHHHHHHHHhhcCCCC
Q 026322 150 FVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSN 189 (240)
Q Consensus 150 f~~~~l~~~~~~~lv~GNi~~~~A~~l~~~~~~~l~~~~~ 189 (240)
|++..++...+.+.|+||=+.+++.+++..+...++.+..
T Consensus 201 f~~~~YSa~~M~lviyg~q~ldeL~~~a~~~F~~Ipn~~~ 240 (937)
T COG1025 201 FHEKHYSANNMKLVIYGNQPLDELAKLAADLFGDIPNRAR 240 (937)
T ss_pred HHHHhcChhheEEEEecCCCHHHHHHHHHHHhCcCCCCCC
Confidence 9999999999999999999999999999999888876655
No 16
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=96.73 E-value=0.029 Score=53.77 Aligned_cols=108 Identities=13% Similarity=0.065 Sum_probs=82.3
Q ss_pred hHHHHHHHHHHHhhcCCCChhhHHHHHHHH--------------HHHHhhhcccChHHHHHHHHHHhccCC-CC--ChhH
Q 026322 72 KLRILLETIFQKIAQFKVKPDRFSVIKEMV--------------TKEYHNNKFLQPFQLAMYYCSLILQDQ-TW--PWME 134 (240)
Q Consensus 72 kl~~ll~~i~~~l~~~~~~~~~F~~~k~~l--------------~~~~~n~~~~~p~~~a~~~~~~ll~~~-~~--~~~e 134 (240)
.+-.++.-.++.+.+|-++++.|.+---++ -.+.+....+ |.......+...+++. .| ..-.
T Consensus 112 Df~NLl~VYlDavf~PlL~~e~F~QEgwr~e~~~~~~l~~~GVVyNEMKGa~ss-~~~~~~~~~~~slfp~~ty~~~SGG 190 (978)
T COG1026 112 DFYNLLSVYLDAVFHPLLTKESFLQEGWRIEFKDESNLKYKGVVYNEMKGAYSS-GESVLSRAMQQSLFPGTTYGVNSGG 190 (978)
T ss_pred hHHHHHHHHHHhhhCcccchHHHhhhhhccccCCCccceeeeEEeehhcccccC-chhHHHHHHHHhhCCCccccccCCC
Confidence 346788888999999988887776532221 2233444444 7777788888888863 33 3445
Q ss_pred HHhhCCCCCHHHHHHHHHHHhhcceeeEEeecCCChHHHHHHHHHH
Q 026322 135 ELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYI 180 (240)
Q Consensus 135 ~l~~l~~it~edl~~f~~~~l~~~~~~~lv~GNi~~~~A~~l~~~~ 180 (240)
....+..+|+|++++|++.++...++-+++.||+..++-.+.++.-
T Consensus 191 ~P~~I~~LtyE~~r~FHkk~Y~pSN~~i~~yGni~~~~~L~~iee~ 236 (978)
T COG1026 191 DPKNIPDLTYEEFRAFHKKHYHPSNCKIFVYGNIPTERLLDFIEEK 236 (978)
T ss_pred CcccccccCHHHHHHHHHHhCCccceEEEEECCCCHHHHHHHHHHh
Confidence 7889999999999999999999999999999999999988877553
No 17
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.16 Score=49.25 Aligned_cols=183 Identities=12% Similarity=0.006 Sum_probs=123.1
Q ss_pred eeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhh----hhhhhccccc--ccEEEEeeeCceeEEEEeeccchHHHHHHH
Q 026322 6 KAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYL----NEYAYYAQVA--GLDYGINHTESGFEVTVVGYNHKLRILLET 79 (240)
Q Consensus 6 k~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l----~e~~y~a~~a--gl~~~~~~~~~gi~l~v~G~s~kl~~ll~~ 79 (240)
+++..+.+.-+...+...-.++|.+.--|+=-.- .|-.|...++ |=+.+......-....+.-=.+++...|..
T Consensus 49 ~ssaal~V~vGS~~DP~dl~GLAHF~EHMlFmGS~KYP~En~y~~~lsk~gGssNA~T~~e~T~y~F~V~~~~l~~ALDr 128 (974)
T KOG0959|consen 49 KSSAALDVKVGSFSDPEDLQGLAHFCEHMLFMGSEKYPDENEYSKFLSKNGGSSNAYTDSEHTNYYFDVQHDHLEGALDR 128 (974)
T ss_pred ccceeeeeeccccCCccccccHHHHHHHHHhhccccCCCcchhHHHHHhcCCccccccccccceEEEecchHHHHHHHHH
Confidence 3445556666666666666899988877775322 2323333333 223333333333444444467789999999
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccC-CCCCh--hHHHhhCCCCC-----HHHHHHHH
Q 026322 80 IFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD-QTWPW--MEELEVLPHLE-----AEDLAKFV 151 (240)
Q Consensus 80 i~~~l~~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~-~~~~~--~e~l~~l~~it-----~edl~~f~ 151 (240)
+.+-+..|.++++.-++-+..+..++++...+ -...-......+-.+ ++++. ....+.|.+.. .+.+..|+
T Consensus 129 FaqFf~~Plf~~~a~eREv~AVdSE~~~nl~~-D~wr~~ql~~~l~~~~hp~~kF~tGN~~tL~~~p~~~~~r~~L~kF~ 207 (974)
T KOG0959|consen 129 FAQFFSDPLFNKSATEREVGAVDSEHEKNLNS-DGWRFDQLLRSLSNPGHPYSKFSTGNKKTLLEGPREIDLRDELLKFY 207 (974)
T ss_pred HHHHhhCcccChHHHHHHHHHHHHHHHhccCc-chhHHHHHHHHhcCCCCcchhccccchhhhhhccccchHHHHHHHHH
Confidence 99999999999999999999999999988776 334444444444443 33332 23445555555 78999999
Q ss_pred HHHhhcceeeEEeecCCChHHHHHHHHHHHHhhcCCCC
Q 026322 152 PMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSN 189 (240)
Q Consensus 152 ~~~l~~~~~~~lv~GNi~~~~A~~l~~~~~~~l~~~~~ 189 (240)
+++++...+.+.|+|+-+.+.-..++..+.+-+..+..
T Consensus 208 k~~Yssn~M~l~i~G~eslD~Le~lv~~~F~~i~N~~~ 245 (974)
T KOG0959|consen 208 KNWYSSNIMTLVIVGKESLDVLESLVTRLFDEISNKKK 245 (974)
T ss_pred HhhcccccceEEEEcCCChhHHHHHHHHHcccccccCC
Confidence 99999999999999999988888876666655555443
No 18
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.068 Score=49.38 Aligned_cols=127 Identities=11% Similarity=0.136 Sum_probs=88.0
Q ss_pred eeEEEEeeccchHHHHHHHHHHHhhcCCCChhhHHHHHHH----------HHHHHhhhcccChHHHHHHHHHHhccCC--
Q 026322 61 GFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEM----------VTKEYHNNKFLQPFQLAMYYCSLILQDQ-- 128 (240)
Q Consensus 61 gi~l~v~G~s~kl~~ll~~i~~~l~~~~~~~~~F~~~k~~----------l~~~~~n~~~~~p~~~a~~~~~~ll~~~-- 128 (240)
..+++.-|+ |.+..++...++.|.+|.++.+.|..-.-. .-.+.++...+ -..........+++++
T Consensus 100 ~YtLStag~-dGFlklLPvy~dHiL~P~Ltdeaf~TEVyHI~geg~d~GVVySEMq~~es~-~~~im~~~~~~~~yP~~s 177 (1022)
T KOG0961|consen 100 AYTLSTAGS-DGFLKLLPVYIDHILTPMLTDEAFATEVYHITGEGNDAGVVYSEMQDHESE-MESIMDRKTKEVIYPPFS 177 (1022)
T ss_pred eEEeecccc-cchHHHhHHHHHhhcCcccchhhhhhheeeecCCCCccceeehhhhhhhcc-cchhhhhhhheeecCCCC
Confidence 344554443 456677788888888988888777543211 12223333322 2233344445556543
Q ss_pred CC--ChhHHHhhCCCCCHHHHHHHHHHHhhcceeeEEeecCCChHHHHHHHHHHHHhhcCCCC
Q 026322 129 TW--PWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSN 189 (240)
Q Consensus 129 ~~--~~~e~l~~l~~it~edl~~f~~~~l~~~~~~~lv~GNi~~~~A~~l~~~~~~~l~~~~~ 189 (240)
.| ....++..|+++|.|.+++|++.++...++-+.|-|+++.++...++..+.+-+.....
T Consensus 178 gY~~eTGG~~knLR~lt~ekIR~yHK~~Y~~sN~cviVcG~v~~d~lL~~m~~~~neile~~s 240 (1022)
T KOG0961|consen 178 GYAVETGGRLKNLRELTLEKIRDYHKKFYHLSNMCVIVCGMVDHDQLLEIMNNVENEILEHMS 240 (1022)
T ss_pred CceeccCCChhhHHHhhHHHHHHHHHHhccccceEEEEecCcCHHHHHHHHHHHHhhhhhccc
Confidence 12 23468889999999999999999999999999999999999999999999887766544
No 19
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=95.39 E-value=0.18 Score=38.30 Aligned_cols=96 Identities=15% Similarity=0.234 Sum_probs=52.5
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhccc--cccc--EEEEeee----CceeEEEEeeccchHHHH
Q 026322 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQ--VAGL--DYGINHT----ESGFEVTVVGYNHKLRIL 76 (240)
Q Consensus 5 Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~e~~y~a~--~agl--~~~~~~~----~~gi~l~v~G~s~kl~~l 76 (240)
+...+.+.+..+.. .+........++..++.......++... ..|+ +...+.. ..-+.+.+.+-.++...+
T Consensus 78 ~~~~v~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~s~l~~~lr~~~~l~y~v~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (184)
T PF05193_consen 78 SQSIVSIAFPGPPI-KDSKDYFALNLLSSLLGNGMSSRLFQELREKQGLAYSVSASNSSYRDSGLFSISFQVTPENLDEA 156 (184)
T ss_dssp SSEEEEEEEEEEET-GTSTTHHHHHHHHHHHHCSTTSHHHHHHHTTTTSESEEEEEEEEESSEEEEEEEEEEEGGGHHHH
T ss_pred cccccccccccccc-cccchhhHHHHHHHHHhcCccchhHHHHHhccccceEEEeeeeccccceEEEEEEEcCcccHHHH
Confidence 34555555555443 2334455556666666665322222211 1222 2222211 123678888887777777
Q ss_pred HHHHHHHhhc---CCCChhhHHHHHHHH
Q 026322 77 LETIFQKIAQ---FKVKPDRFSVIKEMV 101 (240)
Q Consensus 77 l~~i~~~l~~---~~~~~~~F~~~k~~l 101 (240)
++.+.+.+.. ..+++++|+++|.+|
T Consensus 157 ~~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 157 IEAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp HHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 7666665544 469999999999875
No 20
>PTZ00432 falcilysin; Provisional
Probab=95.30 E-value=0.63 Score=46.56 Aligned_cols=162 Identities=12% Similarity=0.095 Sum_probs=103.2
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-hhhhh-------hcccccccEEEEeeeC--------------ceeEEEE
Q 026322 9 VKIYFNCPHASSSPESEVLTDIFTRLLLDY-LNEYA-------YYAQVAGLDYGINHTE--------------SGFEVTV 66 (240)
Q Consensus 9 i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~-l~e~~-------y~a~~agl~~~~~~~~--------------~gi~l~v 66 (240)
+++++..+...-+....-+..||..++... ..... -.....|++.++.... ..+.+++
T Consensus 682 ~y~~~~fdl~~l~~e~~~yl~L~~~~l~~~gT~~~s~~el~~~i~~~tGg~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 761 (1119)
T PTZ00432 682 LYLDFAFSLDSLTVDELKYLNLFKALLKENGTDKLSSEEFTYKREKNLGGLSASTAFYSETNNLTYDDPYNGVGYLNVRA 761 (1119)
T ss_pred EEEEEEecCCCCCHHHHhhHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCeEEEEEEeccccccccCcccccceEEEEEE
Confidence 344443333334556677888888888651 11121 2334456666544322 2589999
Q ss_pred eeccchHHHHHHHHHHHhhcCCCCh-hhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCC-----CCC---hhHHHh
Q 026322 67 VGYNHKLRILLETIFQKIAQFKVKP-DRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-----TWP---WMEELE 137 (240)
Q Consensus 67 ~G~s~kl~~ll~~i~~~l~~~~~~~-~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~-----~~~---~~e~l~ 137 (240)
...++|++.+++.+-+.+.+..++. +++..+..++..++++...+..+..|......-+... .+. .-..+.
T Consensus 762 k~l~~~~~~~~~l~~eil~~~~f~d~~rl~~il~~~~~~~~~~~~~~Gh~~A~~~~~s~~S~~~~~~e~~~G~~~~~fl~ 841 (1119)
T PTZ00432 762 KVLKHKVNEMVDIVLEALKDADFSNSKKGVEILKRKINGMKTVFSSKGHKFALKRMKSKFSVSDYADELVNGYSQLLFLK 841 (1119)
T ss_pred EEhhhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999999999999975 5588888888888888777667777776554433311 111 111222
Q ss_pred hC----CCCC----HHHHHHHHHHHhhcceeeEEeecCCCh
Q 026322 138 VL----PHLE----AEDLAKFVPMMLSRTFLECYIAGNIES 170 (240)
Q Consensus 138 ~l----~~it----~edl~~f~~~~l~~~~~~~lv~GNi~~ 170 (240)
.| .+-. .+.|....+.+++..++.+.++|+...
T Consensus 842 ~l~~~~~e~~~~~v~~~L~~i~~~i~~~~~l~~~vt~~~~~ 882 (1119)
T PTZ00432 842 ETLVPLAEKDWSKVESKLNEIRNKLLSMKNLTVNVTGDSEL 882 (1119)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhCcCCcEEEEEeCHHH
Confidence 11 1111 234667777788888999999998744
No 21
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.65 Score=40.36 Aligned_cols=163 Identities=13% Similarity=0.136 Sum_probs=105.9
Q ss_pred CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH-------------hhhhhhhccccc--ccEEEEeeeCcee-EEEE
Q 026322 3 STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLD-------------YLNEYAYYAQVA--GLDYGINHTESGF-EVTV 66 (240)
Q Consensus 3 ~~Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~-------------~l~e~~y~a~~a--gl~~~~~~~~~gi-~l~v 66 (240)
.+|++++.+.+.+... .+|.. ....+...++.. .|.+..-+-.++ -.+++.+..+.|+ .+.+
T Consensus 267 ~lP~a~~AiAVEG~~w-~~pD~-~~l~van~iiG~wdr~~g~g~~~~s~La~~~~~~~l~~sfqsFnt~YkDTGLwG~y~ 344 (467)
T KOG0960|consen 267 DLPLAHIAIAVEGVSW-AHPDY-FALMVANTIIGNWDRTEGGGRNLSSRLAQKIQQDQLCHSFQSFNTSYKDTGLWGIYF 344 (467)
T ss_pred CCchhheeeeEecCCc-CCccH-HHHHHHHHHhhhhhcccCCccCCccHHHHHHHHHHHHHHHhhhhcccccccceeEEE
Confidence 3799999999987663 33332 122222223221 111111111222 1466776666653 2222
Q ss_pred ee-ccchHHHHHHHHHHHhhcC--CCChhhHHHHHHHHHHHHhhhc-ccChHHHHHHHHHHhcc-CCCCChhHHHhhCCC
Q 026322 67 VG-YNHKLRILLETIFQKIAQF--KVKPDRFSVIKEMVTKEYHNNK-FLQPFQLAMYYCSLILQ-DQTWPWMEELEVLPH 141 (240)
Q Consensus 67 ~G-~s~kl~~ll~~i~~~l~~~--~~~~~~F~~~k~~l~~~~~n~~-~~~p~~~a~~~~~~ll~-~~~~~~~e~l~~l~~ 141 (240)
-. =.+.+..++..++..-... .+++.+-+++|.++...+--.. -..| .|.+.-.++|+ .+..++.|+-.-++.
T Consensus 345 V~~~~~~iddl~~~vl~eW~rL~~~vteaEV~RAKn~Lkt~Lll~ldgttp--i~ediGrqlL~~Grri~l~El~~rId~ 422 (467)
T KOG0960|consen 345 VTDNLTMIDDLIHSVLKEWMRLATSVTEAEVERAKNQLKTNLLLSLDGTTP--IAEDIGRQLLTYGRRIPLAELEARIDA 422 (467)
T ss_pred EecChhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCCc--hHHHHHHHHhhcCCcCChHHHHHHHhh
Confidence 22 4456677777776665443 6899999999999998865443 3335 37777777776 567889999999999
Q ss_pred CCHHHHHHHHHHHhhcceeeEEeecCCC
Q 026322 142 LEAEDLAKFVPMMLSRTFLECYIAGNIE 169 (240)
Q Consensus 142 it~edl~~f~~~~l~~~~~~~lv~GNi~ 169 (240)
||..+++.++.+++-..-+-+..+|.+.
T Consensus 423 vt~~~Vr~va~k~iyd~~iAia~vG~ie 450 (467)
T KOG0960|consen 423 VTAKDVREVASKYIYDKDIAIAAVGPIE 450 (467)
T ss_pred ccHHHHHHHHHHHhhcCCcceeeecccc
Confidence 9999999999999887788888899865
No 22
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=92.62 E-value=7.4 Score=38.02 Aligned_cols=163 Identities=17% Similarity=0.243 Sum_probs=102.7
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh-hhh-------cccccccEEEEeeeC---------ceeEEEEeecc
Q 026322 8 FVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNE-YAY-------YAQVAGLDYGINHTE---------SGFEVTVVGYN 70 (240)
Q Consensus 8 ~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~e-~~y-------~a~~agl~~~~~~~~---------~gi~l~v~G~s 70 (240)
.+.+.|..+.. +..-.-+..||+..+...-.+ ..| ....-|++.+.++.. ..+.+++...+
T Consensus 550 yl~~~~~~~~l--~~~llpyL~L~~~~l~~lgt~~~~y~e~~~~i~~~TGgis~~~~~~~~~~~~~~~~~~~~i~~K~l~ 627 (978)
T COG1026 550 YLRLYFDLDML--PSELLPYLPLFAFALTNLGTETYSYKELLNQIERHTGGISVSLSVDTDPGDDGEYRPSFSISGKALR 627 (978)
T ss_pred EEEEEeecCCC--ChhhhhhHHHHHHHHHhcCCCCcCHHHHHHHHHHHhCCceeeEeeccCCCccccccceEEEEEEehh
Confidence 34444555433 334455667777777653221 111 112235555554332 26888899999
Q ss_pred chHHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCC-----CC---ChhHHHhhCCC
Q 026322 71 HKLRILLETIFQKIAQFKV-KPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-----TW---PWMEELEVLPH 141 (240)
Q Consensus 71 ~kl~~ll~~i~~~l~~~~~-~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~-----~~---~~~e~l~~l~~ 141 (240)
+|...+++.|-+.+.+..+ |.+|...+-+++..++.+...+.+...|......-+... .+ +....+.+|.+
T Consensus 628 ~k~~~~~~~i~~~l~~~~F~D~~Rlkell~q~~~~l~~~vr~sG~~~A~~~~~s~~~~~~~l~e~~~Gl~q~k~i~~l~~ 707 (978)
T COG1026 628 SKVEKLFELIREILANTDFHDRERLKELLEQYLSDLTSSVRNSGHSIASSLANSRLSSAGALKELLNGLSQVKFLRELSS 707 (978)
T ss_pred hhhhHHHHHHHHHHhcCCcCcHHHHHHHHHHHHhhhHHhhhccchHHHHHHhhcccccchhHHHHhcChhHHHHHHHHHH
Confidence 9999999999999999999 778888888888888888877767777766554444321 11 11222332221
Q ss_pred -----CC---HHHHHHHHHHHhhcceeeEEeecCCChHH
Q 026322 142 -----LE---AEDLAKFVPMMLSRTFLECYIAGNIESNE 172 (240)
Q Consensus 142 -----it---~edl~~f~~~~l~~~~~~~lv~GNi~~~~ 172 (240)
.. .+-+++.++.++...++.+++.|+++...
T Consensus 708 ~~~~~~~~ei~~kL~~l~~~i~~~~n~~i~i~~~~~~~~ 746 (978)
T COG1026 708 NFEENFEKEIADKLQALRKKIFQTNNLRIAIIGDIDKIL 746 (978)
T ss_pred hhcccccHHHHHHHHHHHHHHhhcCceEEEEecChhhhH
Confidence 11 23467777888888888899999976543
No 23
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=91.22 E-value=0.74 Score=37.79 Aligned_cols=111 Identities=14% Similarity=0.249 Sum_probs=68.3
Q ss_pred eEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-hhhh-------hhcccccccEEEEeeeC---------ceeEEEEeec
Q 026322 7 AFVKIYFNCPHASSSPESEVLTDIFTRLLLDY-LNEY-------AYYAQVAGLDYGINHTE---------SGFEVTVVGY 69 (240)
Q Consensus 7 ~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~-l~e~-------~y~a~~agl~~~~~~~~---------~gi~l~v~G~ 69 (240)
+++.+.|..+. -++...-+..||+.++... .... .-.....|+++++.... .++.++..+.
T Consensus 92 ~Y~~l~fdl~~--l~~e~l~yl~Ll~~ll~~lgT~~~sy~el~~~i~~~tGGis~~~~~~~~~~~~~~~~~~l~is~k~L 169 (248)
T PF08367_consen 92 VYVRLYFDLSD--LPEEDLPYLPLLTDLLGELGTKNYSYEELSNEIDLYTGGISFSIEVYTDYDDDDKYRPYLVISAKCL 169 (248)
T ss_dssp EEEEEEEE-TT--S-CCCHCCHHHHHHHCCCS-BSSS-HHHHHHHHHHHSSEEEEEEEEEEEECTECCCEEEEEEEEEEE
T ss_pred EEEEEEecCCC--CCHHHHHhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCeEEEeeeccCCCCccceeEEEEEEEEeH
Confidence 44555555543 3444556777888877531 1111 11233456776664332 2689999999
Q ss_pred cchHHHHHHHHHHHhhcCCCCh-hhHHHHHHHHHHHHhhhcccChHHHHHH
Q 026322 70 NHKLRILLETIFQKIAQFKVKP-DRFSVIKEMVTKEYHNNKFLQPFQLAMY 119 (240)
Q Consensus 70 s~kl~~ll~~i~~~l~~~~~~~-~~F~~~k~~l~~~~~n~~~~~p~~~a~~ 119 (240)
.++++.+++.+-+.+.+..++. +++..+-.+....+++......+..|..
T Consensus 170 ~~~~~~~~~ll~eil~~~~f~d~~rl~~ll~~~~s~~~~~i~~~Gh~~A~~ 220 (248)
T PF08367_consen 170 DEKLDEAFELLSEILTETDFDDKERLKELLKELKSDMESSIISSGHSYAMS 220 (248)
T ss_dssp GGGHHHHHHHHHHHHHCB-TT-HHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 9999999999999999999865 4666666666666666655444444443
No 24
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=76.58 E-value=72 Score=30.48 Aligned_cols=156 Identities=17% Similarity=0.201 Sum_probs=104.2
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcccc-cccEEEEee--eC------ceeEEEEeeccc----hHHHHH
Q 026322 11 IYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQV-AGLDYGINH--TE------SGFEVTVVGYNH----KLRILL 77 (240)
Q Consensus 11 ~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~e~~y~a~~-agl~~~~~~--~~------~gi~l~v~G~s~----kl~~ll 77 (240)
+.+.++.. .+...+-...++..++.+.-+.-.|.|.+ .||+.++.+ +. .-+++-+.|-|| |+..++
T Consensus 317 ~s~L~~~p-~d~~etfaL~~L~~Ll~~gpsSp~yk~LiESGLGtEfsvnsG~~~~t~~~~fsVGLqGvseediekve~lV 395 (998)
T KOG2019|consen 317 NSFLSNDP-LDTYETFALKVLSHLLLDGPSSPFYKALIESGLGTEFSVNSGYEDTTLQPQFSVGLQGVSEEDIEKVEELV 395 (998)
T ss_pred EEeecCCc-hhHHHHHHHHHHHHHhcCCCccHHHHHHHHcCCCcccccCCCCCcccccceeeeeeccccHHHHHHHHHHH
Confidence 33444432 34455666778888888888888888766 456544433 22 247888999994 567777
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccC-CCCC---hhHHHhhCCC----CCHHHHHH
Q 026322 78 ETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD-QTWP---WMEELEVLPH----LEAEDLAK 149 (240)
Q Consensus 78 ~~i~~~l~~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~-~~~~---~~e~l~~l~~----it~edl~~ 149 (240)
..+++.+..-.++.++.|.+..++.-+++......-..++.........+ .++. .++.++.++. -+-.-|+.
T Consensus 396 ~~t~~~lae~gfd~drieAil~qiEislk~qst~fGL~L~~~i~~~W~~d~DPfE~Lk~~~~L~~lk~~l~ek~~~lfq~ 475 (998)
T KOG2019|consen 396 MNTFNKLAETGFDNDRIEAILHQIEISLKHQSTGFGLSLMQSIISKWINDMDPFEPLKFEEQLKKLKQRLAEKSKKLFQP 475 (998)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhhhhhhccccchhHHHHHHHhhhhccCCCccchhhhhhHHHHHHHHHhhhchhHHHH
Confidence 78888888888999999999999999988877766667777766666664 2332 3444554432 23334667
Q ss_pred HHHHHh-hc-ceeeEEeecC
Q 026322 150 FVPMML-SR-TFLECYIAGN 167 (240)
Q Consensus 150 f~~~~l-~~-~~~~~lv~GN 167 (240)
.+++++ .+ ..+..-+.++
T Consensus 476 lIkkYilnn~h~~t~smqpd 495 (998)
T KOG2019|consen 476 LIKKYILNNPHCFTFSMQPD 495 (998)
T ss_pred HHHHHHhcCCceEEEEecCC
Confidence 777766 33 3666777776
No 25
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=76.35 E-value=54 Score=28.91 Aligned_cols=106 Identities=17% Similarity=0.169 Sum_probs=66.5
Q ss_pred eeCce-eEEEEeeccchHHHHHHHHHHHhhcCCCC---hhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCCCh
Q 026322 57 HTESG-FEVTVVGYNHKLRILLETIFQKIAQFKVK---PDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPW 132 (240)
Q Consensus 57 ~~~~g-i~l~v~G~s~kl~~ll~~i~~~l~~~~~~---~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~ 132 (240)
.++.| +.+.+.+=..+....+......++.-... -..=.-+...+...+. .... ++..+......+-. ++
T Consensus 312 ysDsGL~gv~~~~~~~~a~~~v~s~v~~lks~~~~~id~~~~~a~~~~l~~~~~-ss~~-a~~~~~~~~a~~~~----~~ 385 (429)
T KOG2583|consen 312 YSDSGLFGVYVSAQGSQAGKVVSSEVKKLKSALVSDIDNAKVKAAIKALKASYL-SSVE-ALELATGSQANLVS----EP 385 (429)
T ss_pred ccCCceEEEEEEecCccHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhh-cchH-HHHHhhHHHhcCCC----Ch
Confidence 33445 46667777777777787777777765432 2222222222222222 2222 55555544433322 78
Q ss_pred hHHHhhCCCCCHHHHHHHHHHHhhcceeeEEeecCCC
Q 026322 133 MEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIE 169 (240)
Q Consensus 133 ~e~l~~l~~it~edl~~f~~~~l~~~~~~~lv~GNi~ 169 (240)
++.+.++++++-.|+.+..+++++. .+-+..+||++
T Consensus 386 d~~i~~id~Vt~sdV~~a~kk~~s~-kls~aA~Gnl~ 421 (429)
T KOG2583|consen 386 DAFIQQIDKVTASDVQKAAKKFLSG-KLSLAAYGNLS 421 (429)
T ss_pred HHHHHHhccccHHHHHHHHHHhccC-cceeeeecccc
Confidence 9999999999999999999999854 46677789976
No 26
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=74.74 E-value=56 Score=31.18 Aligned_cols=160 Identities=13% Similarity=0.124 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHH------hhhhhhh--cccccccEEEEeeeCc------eeEEEEeec--cchHHHHHHHHHHHhhcCCC
Q 026322 26 VLTDIFTRLLLD------YLNEYAY--YAQVAGLDYGINHTES------GFEVTVVGY--NHKLRILLETIFQKIAQFKV 89 (240)
Q Consensus 26 ~l~~L~~~ll~~------~l~e~~y--~a~~agl~~~~~~~~~------gi~l~v~G~--s~kl~~ll~~i~~~l~~~~~ 89 (240)
-+.-||++.+.+ .+.|... .-...|+|.+...... -..|-++|+ ..+.+.+++.+-..+.+..+
T Consensus 600 PylPlfc~sll~lGt~~lsf~el~qqI~rkTGGiS~~p~~~s~~~~d~p~~~i~~~~~~l~rn~~dlfel~n~il~e~~f 679 (998)
T KOG2019|consen 600 PYLPLFCQSLLNLGTGDLSFVELEQQIGRKTGGISVSPLVSSDDGMDEPELGIVFSGSMLDRNADDLFELWNKILQETCF 679 (998)
T ss_pred cchHHHHHHHHhcCCCcccHHHHHHHhhhhcCceeecceeccCCCCCccceeEEechhhhcCChhHHHHHHHHHhcccCc
Confidence 345567666643 2222222 2223567666544321 123455554 45688899988888888877
Q ss_pred C-hhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCCChhH--------HHhhCCCCC-------HHHHHHHHHH
Q 026322 90 K-PDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWME--------ELEVLPHLE-------AEDLAKFVPM 153 (240)
Q Consensus 90 ~-~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~e--------~l~~l~~it-------~edl~~f~~~ 153 (240)
+ +++|.++..+...++.|...+.-+..|.......|....|-.++ .+..|++.. .+.+.+..+.
T Consensus 680 ~n~dkfkvlvk~s~s~~~n~i~dsGH~~A~~rs~a~l~~ag~i~EqlgGl~ql~fl~~L~~~~d~d~~~i~~kL~eIrk~ 759 (998)
T KOG2019|consen 680 TNQDKFKVLVKQSASRMTNGIADSGHGFAAARSAAMLTPAGWISEQLGGLSQLEFLHRLEEKVDNDWEPIVSKLTEIRKS 759 (998)
T ss_pred ccHHHHHHHHHHHHHHhhccCCcccchhHhhhhhcccCcccchHhHhcchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4 68999999999999999887767777777777777766665443 233443333 2335566677
Q ss_pred HhhcceeeEEeecCC-ChHHHHHHHHHHHHhhc
Q 026322 154 MLSRTFLECYIAGNI-ESNEAGSIIQYIEDVFF 185 (240)
Q Consensus 154 ~l~~~~~~~lv~GNi-~~~~A~~l~~~~~~~l~ 185 (240)
+++...+.+.|.-+= .-....+.++.+.+.++
T Consensus 760 ll~~ng~~~~itAd~~q~~~vEkav~kFl~~lp 792 (998)
T KOG2019|consen 760 LLNTNGMIVNITADPKQLTNVEKAVEKFLDSLP 792 (998)
T ss_pred HhcCCCeEEEEecCcccchhHHHHHHHHHHhcc
Confidence 788778877775542 22233344444444444
No 27
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=57.46 E-value=27 Score=18.53 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=19.2
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHH
Q 026322 77 LETIFQKIAQFKVKPDRFSVIKEMVT 102 (240)
Q Consensus 77 l~~i~~~l~~~~~~~~~F~~~k~~l~ 102 (240)
+..+-+....-.+++++|+..|.+++
T Consensus 5 L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 5 LEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 34445555566789999999999875
No 28
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=57.34 E-value=14 Score=28.40 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=32.7
Q ss_pred CCCCCHHHHHHHHHHHh-hcceeeEEeecCCChHHHHHHHHH
Q 026322 139 LPHLEAEDLAKFVPMML-SRTFLECYIAGNIESNEAGSIIQY 179 (240)
Q Consensus 139 l~~it~edl~~f~~~~l-~~~~~~~lv~GNi~~~~A~~l~~~ 179 (240)
|+..+.+++++.++.+. ...++.+.+.|+|+.+.+.++.+.
T Consensus 106 lD~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~ 147 (169)
T PF01729_consen 106 LDNMSPEDLKEAVEELRELNPRVKIEASGGITLENIAEYAKT 147 (169)
T ss_dssp EES-CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHT
T ss_pred ecCcCHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhc
Confidence 34678999999998765 345699999999999999988754
No 29
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=56.86 E-value=27 Score=27.57 Aligned_cols=69 Identities=13% Similarity=0.092 Sum_probs=54.7
Q ss_pred HHHHHHHHHhccCCCCC---hhHHHhhCC--CCCHHHHHHHHHHHhhcceeeEEeecCCChHHHHHHHHHHHHhhc
Q 026322 115 QLAMYYCSLILQDQTWP---WMEELEVLP--HLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFF 185 (240)
Q Consensus 115 ~~a~~~~~~ll~~~~~~---~~e~l~~l~--~it~edl~~f~~~~l~~~~~~~lv~GNi~~~~A~~l~~~~~~~l~ 185 (240)
..+.......+..+.|+ .||+..++. -|+.+++.+++++ .+..+++.+.|.--+++.+++++.+.+.-.
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~--rp~~~evVlTGR~~p~~Lie~ADlVTEm~~ 174 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNA--RPGMQHVVITGRGAPRELIEAADLVTEMRP 174 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHc--CCCCCEEEEECCCCCHHHHHhCchheeccc
Confidence 44566666777777776 588877764 6999999999874 677899999999999999999999876543
No 30
>PF12674 Zn_ribbon_2: Putative zinc ribbon domain
Probab=53.08 E-value=27 Score=23.38 Aligned_cols=36 Identities=11% Similarity=0.210 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHHhhcceeeEEeecCCChHHHHHHHHHHHH
Q 026322 140 PHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIED 182 (240)
Q Consensus 140 ~~it~edl~~f~~~~l~~~~~~~lv~GNi~~~~A~~l~~~~~~ 182 (240)
.++|+|++..+...++.... .+++++|+.++.....
T Consensus 40 ~~~t~eemie~~~~~~~~~~-------~~~~~~a~~~~~~~lp 75 (81)
T PF12674_consen 40 QDITMEEMIEFCVPFMDEFN-------GMTPEEARKMMPRYLP 75 (81)
T ss_pred ecCCHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHcc
Confidence 47899999999999887743 3999999988876543
No 31
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=51.88 E-value=88 Score=24.19 Aligned_cols=52 Identities=17% Similarity=0.346 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHHHHHhhh----hhhhcccccccEEEEeeeCceeEEEEeeccch
Q 026322 20 SSPESEVLTDIFTRLLLDYLN----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHK 72 (240)
Q Consensus 20 ~s~~~~~l~~L~~~ll~~~l~----e~~y~a~~agl~~~~~~~~~gi~l~v~G~s~k 72 (240)
.+.+..++...+..+++..+. -+.|.-.+.|..|.+....+.+.+ .-|||+-
T Consensus 56 ~~kk~~a~~gt~~s~i~Nmi~GVt~Gf~~~L~lvGvgyrv~~~g~~l~l-~LG~sh~ 111 (175)
T TIGR03654 56 DSKEARALHGTTRALINNMVIGVSEGFEKKLEIVGVGYRAQLQGKKLNL-SLGYSHP 111 (175)
T ss_pred CCHHHHHHHHHHHHHHHHHhheeccCcEEEEEEEEEEEEEEEeCCeEEE-EecCcee
Confidence 455667888888888877654 477788888999988887778888 7788864
No 32
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=51.17 E-value=65 Score=30.76 Aligned_cols=110 Identities=15% Similarity=0.123 Sum_probs=68.7
Q ss_pred eEEEEeeccchHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCC---CCChhH----
Q 026322 62 FEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ---TWPWME---- 134 (240)
Q Consensus 62 i~l~v~G~s~kl~~ll~~i~~~l~~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~---~~~~~e---- 134 (240)
+.+++..=.++-+....-+--.+...-++++|-.+.-++++.++.....+ .-..+..+....|+.. .++.++
T Consensus 636 vn~~Ikv~a~~Y~~~v~Wi~~~l~~~VfD~~Ri~~~~~~~l~~i~~~KRd-g~~vlss~~~~~lY~~~slk~s~d~L~~E 714 (1022)
T KOG0961|consen 636 VNLRIKVGADKYPLLVKWIQIFLQGVVFDPSRIHQCAQKLLGEIRDRKRD-GCTVLSSAVASMLYGKNSLKISFDELVLE 714 (1022)
T ss_pred eeEEEEEccCCcchhHHHHHHHhhhhccCHHHHHHHHHHHHhhhhhhhcC-ccEehHHHHHHHHhcccchhhcccHHHHH
Confidence 45666666677777788888888888899999999999999998877665 4344445555555532 223222
Q ss_pred -HHhhCC-------CCCHHHHHHHHHHHhhcceeeEEeecCCChHH
Q 026322 135 -ELEVLP-------HLEAEDLAKFVPMMLSRTFLECYIAGNIESNE 172 (240)
Q Consensus 135 -~l~~l~-------~it~edl~~f~~~~l~~~~~~~lv~GNi~~~~ 172 (240)
+++.+. +--++.+.....-.+....+.++|.|+|++-+
T Consensus 715 k~l~ei~~~v~n~~~~Il~~~e~mR~y~l~~n~~~ihvvgDI~kid 760 (1022)
T KOG0961|consen 715 KLLEEISKDVMNNPEAILEKLEQMRSYALFSNGVNIHVVGDIDKID 760 (1022)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcceEEEEEeehhcCC
Confidence 222221 11133344443323345578899999998743
No 33
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=51.02 E-value=26 Score=23.71 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=28.3
Q ss_pred hhCCCCCHHHHHHHHHHHhhcceeeEEeecCCChHHHHHHHHHHH
Q 026322 137 EVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIE 181 (240)
Q Consensus 137 ~~l~~it~edl~~f~~~~l~~~~~~~lv~GNi~~~~A~~l~~~~~ 181 (240)
.-|..+|.++|..+.+++=-+ +++++|..+++.+.
T Consensus 10 ~Kln~iT~~eLlkyskqy~i~----------it~~QA~~I~~~lr 44 (85)
T PF11116_consen 10 QKLNNITAKELLKYSKQYNIS----------ITKKQAEQIANILR 44 (85)
T ss_pred HHHhcCCHHHHHHHHHHhCCC----------CCHHHHHHHHHHHh
Confidence 457899999999999987333 78999998887764
No 34
>PF08494 DEAD_assoc: DEAD/H associated; InterPro: IPR013701 This domain is found in ATP-dependent helicases as well as a number of hypothetical proteins together with the helicase conserved C-terminal domain (IPR011545 from INTERPRO) and the IPR001650 from INTERPRO domain. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
Probab=48.40 E-value=79 Score=24.66 Aligned_cols=41 Identities=15% Similarity=0.171 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhhcccccccEEEEeeeCceeEEEEeec
Q 026322 19 SSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGY 69 (240)
Q Consensus 19 ~~s~~~~~l~~L~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gi~l~v~G~ 69 (240)
...-.|.+++.+++..+... .|.+..+..+++|+.|...+-
T Consensus 27 ~G~~vN~~L~~lla~~l~~~----------~~~~v~~~~~dygi~l~~~~~ 67 (187)
T PF08494_consen 27 FGRRVNEALARLLAYRLSRR----------YGLSVSVSVDDYGIVLSLPEP 67 (187)
T ss_pred CCHHHHHHHHHHHHHHHHHh----------cCCCeEEEEcCCEEEEEcCCC
Confidence 34556777777777766543 466788888999999999888
No 35
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=48.29 E-value=82 Score=24.31 Aligned_cols=53 Identities=6% Similarity=0.219 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHHHHhhh----hhhhcccccccEE--EEeeeCceeEEE-Eeeccch
Q 026322 20 SSPESEVLTDIFTRLLLDYLN----EYAYYAQVAGLDY--GINHTESGFEVT-VVGYNHK 72 (240)
Q Consensus 20 ~s~~~~~l~~L~~~ll~~~l~----e~~y~a~~agl~~--~~~~~~~gi~l~-v~G~s~k 72 (240)
.+.+..++..++..+++..+. -+.+.-++.|..| ......+.+.++ .-|||+-
T Consensus 53 ~~k~~~a~~gt~rsli~NmI~GVt~Gf~~~LeivGvGy~~ra~~~g~~L~l~n~LG~Sh~ 112 (170)
T TIGR03653 53 ARKKDKAMVGTYRSHIKNMIKGVTEGFEYKMKVVYSHFPMQVKVEGNKVVIENFLGEKAP 112 (170)
T ss_pred CCHHHHHHHHHHHHHHHhheeecccCeEEEEEEEeccccEEEEEcCCeEEEeecccccee
Confidence 456667888888888887553 4667777788888 555545555554 4788865
No 36
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=47.95 E-value=78 Score=24.67 Aligned_cols=54 Identities=6% Similarity=0.222 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhhh----hhhhcccccccEE--EEeeeCceeEEE-Eeeccch
Q 026322 19 SSSPESEVLTDIFTRLLLDYLN----EYAYYAQVAGLDY--GINHTESGFEVT-VVGYNHK 72 (240)
Q Consensus 19 ~~s~~~~~l~~L~~~ll~~~l~----e~~y~a~~agl~~--~~~~~~~gi~l~-v~G~s~k 72 (240)
.++.+..++..++..+++..+. -+.+.-++.|..| ......+++.++ .-|||+-
T Consensus 58 ~~~kk~ra~~gt~rslI~NmI~GVt~Gf~~~LelvGvGypira~~~g~~l~l~n~LG~Sh~ 118 (180)
T PRK05518 58 FARKKTKAMVGTFASHIKNMIKGVTEGFEYKLKIVYSHFPMQVKVQGNEVVIENFLGEKSP 118 (180)
T ss_pred CCCHHHHHHHHHHHHHHHhhheecccceEEEEEEEecCccEEEEEcCCEEEEEecccccee
Confidence 3566778888888888887653 4677778888888 555555566554 5799865
No 37
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.21 E-value=49 Score=27.74 Aligned_cols=41 Identities=12% Similarity=0.296 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHHHHHhh---cceeeEEeecCCChHHHHHHHHH
Q 026322 139 LPHLEAEDLAKFVPMMLS---RTFLECYIAGNIESNEAGSIIQY 179 (240)
Q Consensus 139 l~~it~edl~~f~~~~l~---~~~~~~lv~GNi~~~~A~~l~~~ 179 (240)
|++.+.+++++.++.+-. +.++.+.+.|||+.+.+.++++.
T Consensus 208 LDn~~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~t 251 (278)
T PRK08385 208 LDNMTPEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKL 251 (278)
T ss_pred ECCCCHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHc
Confidence 457899999998876643 24789999999999999988765
No 38
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=44.29 E-value=1.8e+02 Score=24.01 Aligned_cols=157 Identities=12% Similarity=0.171 Sum_probs=86.1
Q ss_pred CCceeEEEEEEeCCCCCCCHHH-HHHHHHHHHHHHHhhhhhhhcccccccEEEEeeeCceeEEEEeeccchHHHHHHHHH
Q 026322 3 STPKAFVKIYFNCPHASSSPES-EVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIF 81 (240)
Q Consensus 3 ~~Pk~~i~~~i~~~~~~~s~~~-~~l~~L~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~ll~~i~ 81 (240)
+++-+.++. |...+...++.. ..+..|+...+.+...+. ..+|+.+++.|--+.+|.-+...+
T Consensus 58 gI~~lTvYa-FS~eN~~R~~~EV~~Lm~l~~~~l~~~~~~~---------------~~~~irv~viG~~~~Lp~~~~~~i 121 (253)
T PRK14836 58 GIEMLTLFA-FSSENWLRPADEVSALMELFLKALDREVDKL---------------HRNGIRVRFIGDRSRLSPKLQERM 121 (253)
T ss_pred CCCEEehhH-hhhhhcCCCHHHHHHHHHHHHHHHHHHHHHH---------------HHCCCEEEEEeccccCCHHHHHHH
Confidence 444444443 444444434332 556677776666554432 246889999999888888777777
Q ss_pred HHhhcCC-----------C---ChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCCChhHH-HhhCCCCCHHH
Q 026322 82 QKIAQFK-----------V---KPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEE-LEVLPHLEAED 146 (240)
Q Consensus 82 ~~l~~~~-----------~---~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~e~-l~~l~~it~ed 146 (240)
+.+...+ + ..++...+..++.+..++...+ |-......+...|+.+..+..|+ +..=-+.-+.+
T Consensus 122 ~~~e~~T~~n~~~~Lnla~~YggR~EI~~A~k~l~~~~~~g~l~-~~~i~e~~i~~~L~~~~~pdpDLlIRTsGE~RLSn 200 (253)
T PRK14836 122 EYAERLTASNTRLILSLAVSYGGRWDIVTAARALAREVAAGKLA-PDEIDEALLAQHLALADLPEPDLFIRTSGELRISN 200 (253)
T ss_pred HHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHHHhCCCC-hHhCCHHHHHHHhccCCCCCCCEEEEcCCcccccC
Confidence 6665322 1 2345555555666666555444 55555566666666554444443 33333444555
Q ss_pred HHHHHHHHhhcceeeEEeec----CCChHHHHHHHHHHH
Q 026322 147 LAKFVPMMLSRTFLECYIAG----NIESNEAGSIIQYIE 181 (240)
Q Consensus 147 l~~f~~~~l~~~~~~~lv~G----Ni~~~~A~~l~~~~~ 181 (240)
|.=|. ..+.+++..- +++..+-.+.+....
T Consensus 201 FLlWQ-----~ayaElyF~~~lWPdf~~~d~~~aL~~y~ 234 (253)
T PRK14836 201 FLLWQ-----LAYTELYFTDTLWPDFDAQELQQALEDYA 234 (253)
T ss_pred ChHHH-----HhheEEEeCCCCCCcCCHHHHHHHHHHHH
Confidence 54443 2344544433 456666655555443
No 39
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=43.86 E-value=83 Score=20.28 Aligned_cols=45 Identities=16% Similarity=0.215 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHhhcceeeEEeecCCChHHHHHHHHHHHHhhcCC
Q 026322 142 LEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKG 187 (240)
Q Consensus 142 it~edl~~f~~~~l~~~~~~~lv~GNi~~~~A~~l~~~~~~~l~~~ 187 (240)
-+++|.....+.+.++ ++.++=..+++.++|.++++.+......-
T Consensus 7 ~~~~D~~~i~~~l~~g-~~Vivnl~~l~~~~~~Ri~Dfl~G~~~al 51 (73)
T PF04472_consen 7 KSFEDAREIVDALREG-KIVIVNLENLDDEEAQRILDFLSGAVYAL 51 (73)
T ss_dssp SSGGGHHHHHHHHHTT---EEEE-TTS-HHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcC-CEEEEECCCCCHHHHHHHHHHHhchheee
Confidence 4678898877666655 77788899999999999999998776543
No 40
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=43.00 E-value=1.4e+02 Score=23.05 Aligned_cols=52 Identities=15% Similarity=0.335 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHHHHHhhh----hhhhcccccccEEEEeeeCceeEEEEeeccch
Q 026322 20 SSPESEVLTDIFTRLLLDYLN----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHK 72 (240)
Q Consensus 20 ~s~~~~~l~~L~~~ll~~~l~----e~~y~a~~agl~~~~~~~~~gi~l~v~G~s~k 72 (240)
.+.+..++...+..+++..+. -+.|.-.+.|..|.+....+.+.+ .-|||+-
T Consensus 57 ~~k~~~a~~gt~~s~I~Nmi~GVt~Gf~~~L~lvGvgyrv~~~g~~l~l-~LG~sh~ 112 (178)
T PRK05498 57 DSKKARALHGTTRALINNMVVGVTEGFEKKLEIVGVGYRAQVKGKKLNL-SLGYSHP 112 (178)
T ss_pred CCHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEEeEEEEEEEeCCeEEE-EecCCEE
Confidence 445567788888887777554 467788888888888887777888 7788864
No 41
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.22 E-value=60 Score=27.14 Aligned_cols=41 Identities=12% Similarity=0.149 Sum_probs=32.3
Q ss_pred CCCCCHHHHHHHHHHHhh-cceeeEEeecCCChHHHHHHHHH
Q 026322 139 LPHLEAEDLAKFVPMMLS-RTFLECYIAGNIESNEAGSIIQY 179 (240)
Q Consensus 139 l~~it~edl~~f~~~~l~-~~~~~~lv~GNi~~~~A~~l~~~ 179 (240)
|++.+++++++.++..-. ..++.+.+.|||+++++.++++.
T Consensus 208 LDn~~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~~ya~~ 249 (273)
T PRK05848 208 CDNMSVEEIKEVVAYRNANYPHVLLEASGNITLENINAYAKS 249 (273)
T ss_pred ECCCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHHc
Confidence 457899999999975321 24778999999999999988655
No 42
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=42.09 E-value=53 Score=21.25 Aligned_cols=42 Identities=14% Similarity=0.025 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHhcc--CCCCChhHHHhhCCCCCHHHHHHHHHHH
Q 026322 113 PFQLAMYYCSLILQ--DQTWPWMEELEVLPHLEAEDLAKFVPMM 154 (240)
Q Consensus 113 p~~~a~~~~~~ll~--~~~~~~~e~l~~l~~it~edl~~f~~~~ 154 (240)
+..++...+..... .+..+...+.++|..+...|+...+++.
T Consensus 39 ~~~~~~~~L~~W~~~~~~~at~~~L~~aL~~~~~~d~~~~i~~~ 82 (83)
T PF00531_consen 39 LREQTYEMLQRWRQREGPNATVDQLIQALRDIGRNDLAEKIEQM 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHGSTSSHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHCCcHHHHHHHHhh
Confidence 34555555544444 3677889999999999999998887765
No 43
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=41.50 E-value=30 Score=19.84 Aligned_cols=25 Identities=20% Similarity=0.402 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHhhcceeeEEeecC
Q 026322 141 HLEAEDLAKFVPMMLSRTFLECYIAGN 167 (240)
Q Consensus 141 ~it~edl~~f~~~~l~~~~~~~lv~GN 167 (240)
..+.+++..|++.+ ++ .--++|||.
T Consensus 17 Had~~~L~~~i~~~-~p-~~vilVHGe 41 (43)
T PF07521_consen 17 HADREELLEFIEQL-NP-RKVILVHGE 41 (43)
T ss_dssp S-BHHHHHHHHHHH-CS-SEEEEESSE
T ss_pred CCCHHHHHHHHHhc-CC-CEEEEecCC
Confidence 46789999999998 55 778899995
No 44
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=40.38 E-value=1.2e+02 Score=23.83 Aligned_cols=54 Identities=7% Similarity=0.114 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhh----hhhhhcccccccEE--EEeeeCceeEEE-Eeeccch
Q 026322 19 SSSPESEVLTDIFTRLLLDYL----NEYAYYAQVAGLDY--GINHTESGFEVT-VVGYNHK 72 (240)
Q Consensus 19 ~~s~~~~~l~~L~~~ll~~~l----~e~~y~a~~agl~~--~~~~~~~gi~l~-v~G~s~k 72 (240)
.++.+..++..++..+++..+ .-+.|.-++.|..| ......+++.|+ .-|||+-
T Consensus 59 ~~~kk~~al~Gt~rslI~NMI~GVt~GF~k~L~ivgvgyp~ra~v~g~~l~l~N~LG~sh~ 119 (189)
T PTZ00179 59 FGSKIPNSTINTALSHVRNMITGVTKGFRFKVRFAYAHFPISVSVENQLVEIRNFLGEKRV 119 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhhcCCEEEEEEEEEeCcceEEEEcCCEEEEEecCCCCcc
Confidence 345666788888888887755 34778888888888 777666777776 7899965
No 45
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=40.03 E-value=36 Score=30.25 Aligned_cols=96 Identities=15% Similarity=0.121 Sum_probs=52.9
Q ss_pred hhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCCChhH-HHhhCCCCCHHHHHHH--HHHHhhc--ceeeEEee
Q 026322 91 PDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWME-ELEVLPHLEAEDLAKF--VPMMLSR--TFLECYIA 165 (240)
Q Consensus 91 ~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~e-~l~~l~~it~edl~~f--~~~~l~~--~~~~~lv~ 165 (240)
+++|..+|.+++.+..|... ...+...+...|....-...+ --+.+..|+++|+.+= .+.+... .+-.+.|-
T Consensus 4 p~rf~~lK~~L~~~~~~~~~---v~~sw~rll~~l~~~~~~i~~~G~~~IP~i~f~di~~~~~~~~~~~~ir~rG~~VIR 80 (416)
T PF07350_consen 4 PARFAELKRSLIAKPGNEEA---VFASWERLLEALEREIEEIAAKGSSIIPEIDFADIENGGVSEEFLAEIRRRGCVVIR 80 (416)
T ss_dssp -HHHHHHHHHHHHHHS-HHH---HHHHHHHHHHHHHHHHHHHHHCT--SS-EEEHHHHHCT---HHHHHHHHHHSEEEEC
T ss_pred HHHHHHHHHHHHhhcCCHHH---HHHHHHHHHHHHHHHHHHHHHhCCCCCceeeHHHHhCCCCCHHHHHHHHhcCEEEEe
Confidence 57899999999977765431 122222222222110000000 0235566777777644 4444433 25678899
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCC
Q 026322 166 GNIESNEAGSIIQYIEDVFFKGSN 189 (240)
Q Consensus 166 GNi~~~~A~~l~~~~~~~l~~~~~ 189 (240)
|-+.+++|...-+.+.+-+..+..
T Consensus 81 ~Vvp~~ea~~w~~e~~~Y~~~n~~ 104 (416)
T PF07350_consen 81 GVVPREEALAWKQELKEYLKANPD 104 (416)
T ss_dssp TSS-HHHHHHHHHHHHHHHHHT--
T ss_pred CCCCHHHHHHHHHHHHHHHHhCcc
Confidence 999999999999999998876653
No 46
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=39.42 E-value=68 Score=27.18 Aligned_cols=39 Identities=13% Similarity=0.132 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHHHHHhhcceeeEEeecCCChHHHHHHHHH
Q 026322 139 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQY 179 (240)
Q Consensus 139 l~~it~edl~~f~~~~l~~~~~~~lv~GNi~~~~A~~l~~~ 179 (240)
|+..+.+++++.++.. ..++.+-+.|||+.+.+.++++.
T Consensus 234 LDn~s~e~~~~av~~~--~~~~~ieaSGGI~~~ni~~yA~t 272 (296)
T PRK09016 234 LDNFTTEQMREAVKRT--NGRALLEVSGNVTLETLREFAET 272 (296)
T ss_pred eCCCChHHHHHHHHhh--cCCeEEEEECCCCHHHHHHHHhc
Confidence 3468899999999843 34788999999999999988655
No 47
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.80 E-value=66 Score=27.17 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHHHhhcceeeEEeecCCChHHHHHHHHH
Q 026322 139 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQY 179 (240)
Q Consensus 139 l~~it~edl~~f~~~~l~~~~~~~lv~GNi~~~~A~~l~~~ 179 (240)
|++.+.|++++.++.. . .++.+-+.|||+.+.+.++++.
T Consensus 223 LDnmspe~l~~av~~~-~-~~~~leaSGGI~~~ni~~yA~t 261 (290)
T PRK06559 223 LDNMSLEQIEQAITLI-A-GRSRIECSGNIDMTTISRFRGL 261 (290)
T ss_pred ECCCCHHHHHHHHHHh-c-CceEEEEECCCCHHHHHHHHhc
Confidence 3478999999998743 3 3678999999999999988765
No 48
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.47 E-value=70 Score=27.09 Aligned_cols=38 Identities=5% Similarity=0.072 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHhhcceeeEEeecCCChHHHHHHHHH
Q 026322 140 PHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQY 179 (240)
Q Consensus 140 ~~it~edl~~f~~~~l~~~~~~~lv~GNi~~~~A~~l~~~ 179 (240)
++.+.|++++.++.. +.++.+-+.|||+.+.+.++++.
T Consensus 232 Dnmspe~l~~av~~~--~~~~~lEaSGGIt~~ni~~yA~t 269 (294)
T PRK06978 232 DNFTLDMMREAVRVT--AGRAVLEVSGGVNFDTVRAFAET 269 (294)
T ss_pred CCCCHHHHHHHHHhh--cCCeEEEEECCCCHHHHHHHHhc
Confidence 468999999988754 23678999999999999887654
No 49
>PRK14425 acylphosphatase; Provisional
Probab=38.20 E-value=59 Score=22.29 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=30.0
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 82 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i~~ 82 (240)
.|...||+=.+....+| +++.+.|-.+++..++..+-+
T Consensus 28 ~A~~~gl~G~V~N~~dGsVei~~qG~~~~le~f~~~l~~ 66 (94)
T PRK14425 28 EAERLGLTGWVRNESDGSVTALIAGPDSAISAMIERFRR 66 (94)
T ss_pred HHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 45566787777777788 999999999998777777753
No 50
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=38.04 E-value=68 Score=24.85 Aligned_cols=69 Identities=13% Similarity=0.071 Sum_probs=52.5
Q ss_pred HHHHHHHHHhccCCCCC---hhHHHhhCC--CCCHHHHHHHHHHHhhcceeeEEeecCCChHHHHHHHHHHHHhhc
Q 026322 115 QLAMYYCSLILQDQTWP---WMEELEVLP--HLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFF 185 (240)
Q Consensus 115 ~~a~~~~~~ll~~~~~~---~~e~l~~l~--~it~edl~~f~~~~l~~~~~~~lv~GNi~~~~A~~l~~~~~~~l~ 185 (240)
..+.......+..+.|. .||...++. -|+.+++.+++++ .+..+++.+.|---+++.+++++.+.+.-.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~--rp~~~evVlTGR~~p~~l~e~AD~VTEm~~ 156 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQE--RPGHQHVIITGRGCPQDLLELADLVTEMRP 156 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHh--CCCCCEEEEECCCCCHHHHHhCceeeeecc
Confidence 34555556666666676 578777664 6899999988864 667899999999999999999988876543
No 51
>KOG3460 consensus Small nuclear ribonucleoprotein (snRNP) LSM3 [RNA processing and modification]
Probab=37.33 E-value=13 Score=24.70 Aligned_cols=47 Identities=13% Similarity=0.312 Sum_probs=39.1
Q ss_pred ceeEEEEeeccchHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHh
Q 026322 60 SGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYH 106 (240)
Q Consensus 60 ~gi~l~v~G~s~kl~~ll~~i~~~l~~~~~~~~~F~~~k~~l~~~~~ 106 (240)
+-+.=++.||.+++..++..+-+.+...+.+++.|+.+.....|.+.
T Consensus 26 rel~G~L~afD~HlNmvL~d~eetit~~e~~E~~~e~~~k~~~r~~e 72 (91)
T KOG3460|consen 26 RELRGTLHAFDEHLNMVLGDVEETITTVEIDEDTYEEIVKTTKRTVE 72 (91)
T ss_pred hhhhcchhhhHHhhhhhhhhhhheEEEeeccchhHHHHHhhhhccee
Confidence 34566889999999999999999999999999999887766665543
No 52
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=36.75 E-value=55 Score=25.48 Aligned_cols=67 Identities=10% Similarity=0.186 Sum_probs=50.8
Q ss_pred HHHHHHHHHhccCCCCC---hhHHHhhCC--CCCHHHHHHHHHHHhhcceeeEEeecCCChHHHHHHHHHHHHh
Q 026322 115 QLAMYYCSLILQDQTWP---WMEELEVLP--HLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDV 183 (240)
Q Consensus 115 ~~a~~~~~~ll~~~~~~---~~e~l~~l~--~it~edl~~f~~~~l~~~~~~~lv~GNi~~~~A~~l~~~~~~~ 183 (240)
..+.......+..+.|. .||...++. -|+.+++.++.++ .+..+++.+.|.--+++-+++++.+.+.
T Consensus 101 ~~~~~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~--rp~~~evILTGR~~p~~Lie~AD~VTEm 172 (178)
T PRK07414 101 QELWQYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEK--RPSHVDVILTGPEMPESLLAIADQITEL 172 (178)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHh--CCCCCEEEEECCCCCHHHHHhCCeeeee
Confidence 34455555666677676 588877764 5899999999884 5678999999998888888888877543
No 53
>PRK14429 acylphosphatase; Provisional
Probab=36.62 E-value=73 Score=21.57 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=29.6
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 82 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i~~ 82 (240)
.|...||+=.+....+| +++.+.|-.+++..++..+-+
T Consensus 24 ~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 62 (90)
T PRK14429 24 KARALGVTGYVTNCEDGSVEILAQGSDPAVDNLIAWCEV 62 (90)
T ss_pred HHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 45666777777777788 999999999888777777654
No 54
>PRK14420 acylphosphatase; Provisional
Probab=36.20 E-value=78 Score=21.42 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=29.2
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQK 83 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i~~~ 83 (240)
.|...||+=.+....+| +++.+.|-.+++..|+..+-+.
T Consensus 24 ~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~~ 63 (91)
T PRK14420 24 EADKRKLTGWVKNRDDGTVEIEAEGPEEALQLFLDAIEKG 63 (91)
T ss_pred HHHHcCCEEEEEECCCCcEEEEEEECHHHHHHHHHHHHhC
Confidence 45556776667777788 9999999888877777766554
No 55
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=35.90 E-value=78 Score=26.53 Aligned_cols=41 Identities=15% Similarity=0.108 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHHHHHhhcceeeEEeecCCChHHHHHHHHH
Q 026322 139 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQY 179 (240)
Q Consensus 139 l~~it~edl~~f~~~~l~~~~~~~lv~GNi~~~~A~~l~~~ 179 (240)
|...+.|+++..++.+-.+.++..-+.|||+.+.+..+.+.
T Consensus 214 LDNm~~e~~~~av~~l~~~~~~~lEaSGgIt~~ni~~yA~t 254 (280)
T COG0157 214 LDNMSPEELKEAVKLLGLAGRALLEASGGITLENIREYAET 254 (280)
T ss_pred ecCCCHHHHHHHHHHhccCCceEEEEeCCCCHHHHHHHhhc
Confidence 34689999999988865556788888999999998877655
No 56
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=35.11 E-value=95 Score=26.23 Aligned_cols=40 Identities=8% Similarity=-0.038 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHh-hcceeeEEeecCCChHHHHHHHHH
Q 026322 140 PHLEAEDLAKFVPMML-SRTFLECYIAGNIESNEAGSIIQY 179 (240)
Q Consensus 140 ~~it~edl~~f~~~~l-~~~~~~~lv~GNi~~~~A~~l~~~ 179 (240)
++.+.++++..++..- ...++.+.+.|+|+.+.+.++++.
T Consensus 226 Dnm~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~yA~t 266 (289)
T PRK07896 226 DNFPVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAYAET 266 (289)
T ss_pred CCCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhc
Confidence 4788999999987532 245788999999999999987765
No 57
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=35.07 E-value=93 Score=23.89 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHhh--cceeeEEeecC---------CChHHHHHHHHHHH
Q 026322 142 LEAEDLAKFVPMMLS--RTFLECYIAGN---------IESNEAGSIIQYIE 181 (240)
Q Consensus 142 it~edl~~f~~~~l~--~~~~~~lv~GN---------i~~~~A~~l~~~~~ 181 (240)
=+++.+++|+..+-. ..-++++|+|| ++.++|...++.+-
T Consensus 99 dSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvG 149 (218)
T KOG0088|consen 99 DSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVG 149 (218)
T ss_pred HHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhc
Confidence 357788899887664 34788999999 45566666655543
No 58
>PRK14430 acylphosphatase; Provisional
Probab=34.26 E-value=72 Score=21.77 Aligned_cols=36 Identities=25% Similarity=0.241 Sum_probs=28.0
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETI 80 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i 80 (240)
.|...|+.=.+....+| +++.+.|-.+++..|+..+
T Consensus 26 ~A~~lgl~G~VrN~~dGsVei~~qG~~~~i~~f~~~l 62 (92)
T PRK14430 26 AADDLGLGGWVRNRADGTVEVMASGTVRQLEALRAWM 62 (92)
T ss_pred HHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHH
Confidence 45666776666666777 9999999999988777776
No 59
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=34.09 E-value=99 Score=25.95 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHh-hcceeeEEeecCCChHHHHHHHHH
Q 026322 140 PHLEAEDLAKFVPMML-SRTFLECYIAGNIESNEAGSIIQY 179 (240)
Q Consensus 140 ~~it~edl~~f~~~~l-~~~~~~~lv~GNi~~~~A~~l~~~ 179 (240)
.+.+.+++++.++..- ...++.+-+.|+|+.+.+.++.+.
T Consensus 215 Dn~~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ya~~ 255 (277)
T TIGR01334 215 DKFTPQQLHHLHERLKFFDHIPTLAAAGGINPENIADYIEA 255 (277)
T ss_pred CCCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhc
Confidence 4688999998887653 245788999999999999877654
No 60
>PRK14440 acylphosphatase; Provisional
Probab=33.86 E-value=76 Score=21.53 Aligned_cols=37 Identities=32% Similarity=0.343 Sum_probs=27.8
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i~ 81 (240)
.|...||+=.+....+| +++.+.|-.+++..++..+-
T Consensus 25 ~A~~~gl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~ 62 (90)
T PRK14440 25 HAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIK 62 (90)
T ss_pred HHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHh
Confidence 45556776667777777 99999998888877776664
No 61
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=33.27 E-value=2.6e+02 Score=22.65 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=63.9
Q ss_pred CceeEEEEEEeCCCCCCCHHH-HHHHHHHHHHHHHhhhhhhhcccccccEEEEeeeCceeEEEEeeccchHHHHHHHHHH
Q 026322 4 TPKAFVKIYFNCPHASSSPES-EVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQ 82 (240)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~-~~l~~L~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~ll~~i~~ 82 (240)
++-+.++ .|.+.+...++.. ..+.+|+...+.+...+. ..+|+.+++-|=-+.+|.-+...++
T Consensus 44 I~~lT~y-aFStEN~~Rp~~EV~~Lm~L~~~~l~~~~~~~---------------~~~~irvr~iGd~~~Lp~~~~~~i~ 107 (226)
T TIGR00055 44 VECLTLY-AFSTENWKRPKEEVDFLMELFEKKLDREVKEL---------------HRYNVRIRIIGDLSLLSKELQEKIK 107 (226)
T ss_pred CCEEEEE-EeehhhcCcCHHHHHHHHHHHHHHHHHHHHHH---------------HHCCCEEEEEeChhhCCHHHHHHHH
Confidence 4444443 2555555544433 567777777776544332 2468889999988888877777776
Q ss_pred HhhcCC-----------C---ChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCCC
Q 026322 83 KIAQFK-----------V---KPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWP 131 (240)
Q Consensus 83 ~l~~~~-----------~---~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~ 131 (240)
.+.... + ..++...+..++.++..+...+ |-......+...|+.+..+
T Consensus 108 ~~e~~T~~n~~~~lnia~~Yggr~EI~~A~~~~~~~~~~g~~~-~~~i~e~~~~~~L~t~~~p 169 (226)
T TIGR00055 108 KAEEDTKNNTDFTLNIAFNYGGRNEILHAVKQIAEKVKSGKLL-PEDIDEETLNKHLYTANLP 169 (226)
T ss_pred HHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHhCCCC-hhhCCHHHHHHhhccCCCC
Confidence 554432 1 1345555555666655554444 5555556666666644443
No 62
>PRK14445 acylphosphatase; Provisional
Probab=33.18 E-value=92 Score=21.13 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=29.0
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i~ 81 (240)
.|...||+=.+....+| +++.+.|=.+++..++..+-
T Consensus 26 ~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~ 63 (91)
T PRK14445 26 AASELNLSGWVRNLPDGTVEIEAQGSSGMIDELIKQAE 63 (91)
T ss_pred HHhhCCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHH
Confidence 46667787777777788 99999998888877777664
No 63
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=32.96 E-value=1.5e+02 Score=23.04 Aligned_cols=52 Identities=15% Similarity=0.366 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHHHHhhh----hhhhcccccccEEEEeeeCceeEEEEeeccch
Q 026322 20 SSPESEVLTDIFTRLLLDYLN----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHK 72 (240)
Q Consensus 20 ~s~~~~~l~~L~~~ll~~~l~----e~~y~a~~agl~~~~~~~~~gi~l~v~G~s~k 72 (240)
++-+..++...+..+++..+. -+.|.-.+.|..|.+....+.+.+ .-|||+-
T Consensus 57 ~~k~~~a~~gt~~slI~Nmi~GVt~Gf~~~L~lvGvGyr~~~~g~~l~l-~LG~sh~ 112 (178)
T CHL00140 57 ESKKARALHGLYRTLINNMVIGVSEGFEKKLELQGVGYRAQVQGKDLIL-NLGYSHP 112 (178)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhcccCceEEEEEEEEEEEEEEeCCcEEE-EecCCee
Confidence 455667778888888877554 467778888888888887778888 7788864
No 64
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.87 E-value=87 Score=26.34 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHHHHhhcceeeEEeecCCChHHHHHHHHH
Q 026322 139 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQY 179 (240)
Q Consensus 139 l~~it~edl~~f~~~~l~~~~~~~lv~GNi~~~~A~~l~~~ 179 (240)
|++.+.+++++.+...- .+..+-+.|||+.+.+.++++.
T Consensus 219 LDn~s~e~l~~av~~~~--~~~~leaSGgI~~~ni~~yA~t 257 (281)
T PRK06543 219 LDNFSLDDLREGVELVD--GRAIVEASGNVNLNTVGAIAST 257 (281)
T ss_pred ECCCCHHHHHHHHHHhC--CCeEEEEECCCCHHHHHHHHhc
Confidence 34789999999988543 3457889999999999988654
No 65
>PRK14431 acylphosphatase; Provisional
Probab=32.62 E-value=90 Score=21.14 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=28.0
Q ss_pred cccccccEEEEeeeCceeEEEEeeccchHHHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQ 82 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~ll~~i~~ 82 (240)
.|...|++=-+....+|+++.+.|-.+.+..++..+.+
T Consensus 24 ~A~~~gl~G~V~N~~dgVei~~qG~~~~l~~f~~~l~~ 61 (89)
T PRK14431 24 IAMNYNIVGTVQNVDDYVEIYAQGDDADLERFIQGVIE 61 (89)
T ss_pred HHhhcCCEEEEEECCCcEEEEEEcCHHHHHHHHHHHhc
Confidence 45556776556656669999999988888777766654
No 66
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=32.42 E-value=60 Score=23.16 Aligned_cols=67 Identities=10% Similarity=0.197 Sum_probs=38.8
Q ss_pred chHHHHHHHHHHHhhcC--CCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCCChhHHHhhCCC
Q 026322 71 HKLRILLETIFQKIAQF--KVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPH 141 (240)
Q Consensus 71 ~kl~~ll~~i~~~l~~~--~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~e~l~~l~~ 141 (240)
..+...-..++..+.+. +++.+.|+..|.+.+-.+--. .|-. +..++...++.+.++..+++..|..
T Consensus 41 ~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v~---~P~~-~~~~L~~~f~~~~~Sl~qR~~iL~~ 109 (114)
T PF10193_consen 41 TELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVVA---APEK-VAPYLTEEFFSGDYSLQQRMSILSA 109 (114)
T ss_dssp SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHHH---SGGG-HHH-HHHHHTTS---THHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHH---hhHH-HHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34455555666666554 567889999888887776533 2744 4445556677788998887765543
No 67
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=32.31 E-value=20 Score=21.08 Aligned_cols=11 Identities=18% Similarity=0.060 Sum_probs=6.8
Q ss_pred cCCChHHHHHH
Q 026322 166 GNIESNEAGSI 176 (240)
Q Consensus 166 GNi~~~~A~~l 176 (240)
|-||++|..+|
T Consensus 30 ~~IT~eey~eI 40 (45)
T TIGR01669 30 KLITREQYKVI 40 (45)
T ss_pred CccCHHHHHHH
Confidence 56666666654
No 68
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=32.19 E-value=2.9e+02 Score=22.79 Aligned_cols=156 Identities=12% Similarity=0.124 Sum_probs=85.2
Q ss_pred CCceeEEEEEEeCCCCCCCHHH-HHHHHHHHHHHHHhhhhhhhcccccccEEEEeeeCceeEEEEeeccchHHHHHHHHH
Q 026322 3 STPKAFVKIYFNCPHASSSPES-EVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIF 81 (240)
Q Consensus 3 ~~Pk~~i~~~i~~~~~~~s~~~-~~l~~L~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~ll~~i~ 81 (240)
+++-++++. |...+...++.. ..+.+|+...+.+.+... ..+|+.|.+.|=-+.+|.-+...+
T Consensus 58 gI~~lTvYa-FS~eN~~R~~~EV~~Lm~L~~~~l~~~~~~~---------------~~~~iri~viGd~~~Lp~~l~~~i 121 (249)
T PRK14834 58 GIGYLTLFA-FSSENWSRPASEVSDLFGLLRLFIRRDLAEL---------------HRNGVRVRVIGERAGLEADICALL 121 (249)
T ss_pred CCCEEEEEE-EeccccCCCHHHHHHHHHHHHHHHHHHHHHH---------------HHCCcEEEEEcChhhCCHHHHHHH
Confidence 455555553 444555444433 556677777766543221 245888888888888877776655
Q ss_pred HHhhcCC-----------C---ChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCCChhHH-HhhCCCCCHHH
Q 026322 82 QKIAQFK-----------V---KPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEE-LEVLPHLEAED 146 (240)
Q Consensus 82 ~~l~~~~-----------~---~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~e~-l~~l~~it~ed 146 (240)
..+.... + ..++...+..++.+...+...+ |-......+...|+.+..+..|+ +..=-...+.+
T Consensus 122 ~~~e~~T~~~~~~~lnla~~Yggr~EI~~A~k~~~~~~~~g~~~-~~dI~e~~i~~~L~~~~~pdpDLLIRTsGe~RLSn 200 (249)
T PRK14834 122 NEAEELTRNNTGLNLVIAFNYGSRDEIARAVRRLAREVAEGRLD-PASIDAETISANLDTADIPDPDLIIRTSGEQRLSN 200 (249)
T ss_pred HHHHHhhccCCceEEEEEeccCCHHHHHHHHHHHHHHHHcCCCC-hhhCCHHHHHHHhccCCCCCCCEEEEcCCcccccC
Confidence 5443322 1 2355566666666666655554 65566666777776554443333 22223334444
Q ss_pred HHHHHHHHhhcceeeEEeecC----CChHHHHHHHHHH
Q 026322 147 LAKFVPMMLSRTFLECYIAGN----IESNEAGSIIQYI 180 (240)
Q Consensus 147 l~~f~~~~l~~~~~~~lv~GN----i~~~~A~~l~~~~ 180 (240)
|.=| +..+.+++.... ++..+-...+...
T Consensus 201 FLlW-----Q~~yaElyF~~~lWPdf~~~d~~~al~~y 233 (249)
T PRK14834 201 FLLW-----QAAYSELLFVPIHWPDFDKAALEAAIEEY 233 (249)
T ss_pred ChHH-----hHhheEEEeCCCCCCcCCHHHHHHHHHHH
Confidence 4333 334456655554 4555555444443
No 69
>PRK14435 acylphosphatase; Provisional
Probab=31.55 E-value=90 Score=21.15 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=27.7
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i~ 81 (240)
.|...||+=.+....+| +++.+.|-.+++..++..+-
T Consensus 24 ~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 61 (90)
T PRK14435 24 VAKSLGVKGYVMNMDDGSVFIHAEGDENALRRFLNEVA 61 (90)
T ss_pred HHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHh
Confidence 45556776666666667 99999999888877777664
No 70
>PRK14449 acylphosphatase; Provisional
Probab=31.36 E-value=99 Score=20.91 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=28.3
Q ss_pred ccccccEEEEeeeCce-eEEEEeeccchHHHHHHHHHHH
Q 026322 46 AQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQK 83 (240)
Q Consensus 46 a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i~~~ 83 (240)
|..-|++=.+....+| +++.+.|-.+.+..++..+-+.
T Consensus 26 A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~~ 64 (90)
T PRK14449 26 AVSLGITGYAENLYDGSVEVVAEGDEENIKELINFIKTG 64 (90)
T ss_pred HHHcCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhhC
Confidence 4455676667777777 9999999888887777766553
No 71
>PRK14444 acylphosphatase; Provisional
Probab=30.81 E-value=90 Score=21.27 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=28.8
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i~ 81 (240)
.|...||+=.+....+| +++.+.|-.+++..|++.+-
T Consensus 26 ~A~~lgl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 63 (92)
T PRK14444 26 RAREAGVKGWVRNLSDGRVEAVFEGSRPAVQKMISWCY 63 (92)
T ss_pred HHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHH
Confidence 45556777667777788 99999999999877777754
No 72
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=30.80 E-value=92 Score=26.40 Aligned_cols=130 Identities=15% Similarity=0.156 Sum_probs=82.7
Q ss_pred cccEEEEeeeCceeEEEEeeccchHHHHHHHHHHHh--hcCC-----CChhhHHHHHHHHHHHHhhhcccC---h-----
Q 026322 49 AGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKI--AQFK-----VKPDRFSVIKEMVTKEYHNNKFLQ---P----- 113 (240)
Q Consensus 49 agl~~~~~~~~~gi~l~v~G~s~kl~~ll~~i~~~l--~~~~-----~~~~~F~~~k~~l~~~~~n~~~~~---p----- 113 (240)
.|+.-.+.....||.-+|+|..+....++..+...- .+.. -++..|.++|=++.+++=...... |
T Consensus 33 ~~vkGrillA~EGINgtvsG~~e~~~~~~~~l~a~~~f~~l~~K~s~~~~~pF~r~kVk~kkEIV~lg~~ddv~p~~~vG 112 (308)
T COG1054 33 LGVKGRILLAHEGINGTVSGSAEAIEAYMAWLRADPGFADLRFKISEADEKPFWRLKVKLKKEIVALGVEDDVDPLENVG 112 (308)
T ss_pred cCceeEEEEccCCcceeEecCHHHHHHHHHHHHhCcccccceeeeccccCCCcceEEEeehhhheecCCCCCcCcccccc
Confidence 466667777788999999999999888887776543 2221 245779999888888875543321 2
Q ss_pred -HHHHHHHHHHhccCCC---------CCh--hHHHhhC--CCCCHHHHHHHHHHHh---hcceeeEEeecCCChHHHHHH
Q 026322 114 -FQLAMYYCSLILQDQT---------WPW--MEELEVL--PHLEAEDLAKFVPMML---SRTFLECYIAGNIESNEAGSI 176 (240)
Q Consensus 114 -~~~a~~~~~~ll~~~~---------~~~--~e~l~~l--~~it~edl~~f~~~~l---~~~~~~~lv~GNi~~~~A~~l 176 (240)
|-...++. .++.++. |.. --.-.|+ +.-|+.+|-.++++.+ ....+.++..|-|.-|.|...
T Consensus 113 ~yl~p~~wn-~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tFrefP~~v~~~~~~~~~KkVvmyCTGGIRCEKas~~ 191 (308)
T COG1054 113 TYLSPKDWN-ELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETFREFPAWVEENLDLLKDKKVVMYCTGGIRCEKASAW 191 (308)
T ss_pred CccCHHHHH-HHhcCCCeEEEEcCcceeEeeeeecCccCCChhhhhhhHHHHHHHHHhccCCcEEEEcCCceeehhhHHH
Confidence 33333343 3333321 111 0112222 2456777777777655 345899999999999999877
Q ss_pred HHH
Q 026322 177 IQY 179 (240)
Q Consensus 177 ~~~ 179 (240)
+..
T Consensus 192 m~~ 194 (308)
T COG1054 192 MKE 194 (308)
T ss_pred HHH
Confidence 643
No 73
>PF06576 DUF1133: Protein of unknown function (DUF1133); InterPro: IPR010557 This family consists of a number of hypothetical proteins from Escherichia coli O157:H7 and Salmonella typhi. The function of this family is unknown.
Probab=30.72 E-value=1.5e+02 Score=22.88 Aligned_cols=70 Identities=16% Similarity=0.084 Sum_probs=52.1
Q ss_pred HHHHHHHHHhccCCCCChhHHHhhCC-----CCCHHHHHHHHHHHhhcceeeEEeecCCChHHHHHHHHHHHHhhcC
Q 026322 115 QLAMYYCSLILQDQTWPWMEELEVLP-----HLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFK 186 (240)
Q Consensus 115 ~~a~~~~~~ll~~~~~~~~e~l~~l~-----~it~edl~~f~~~~l~~~~~~~lv~GNi~~~~A~~l~~~~~~~l~~ 186 (240)
-.+...++++|....++...+-++|. .++=+++..|.+.++++..-..+ ++-+.+||..+=.-+.+.|..
T Consensus 40 G~~g~mfnqLl~s~kitKtaI~~aLr~mkKsGi~k~EL~~~~~eil~gK~kS~L--a~ctD~Eal~iDrVI~~vL~~ 114 (176)
T PF06576_consen 40 GKGGNMFNQLLASKKITKTAINEALRRMKKSGISKPELEAFLREILNGKQKSWL--AFCTDDEALFIDRVIGEVLAE 114 (176)
T ss_pred CchhhHHHHHHhcccccHHHHHHHHHHHHHhcCCcHHHHHHHHHHhCccccccc--ceecchHHHHHHHHHHHHHHh
Confidence 35567889999999998766656664 57889999999999977655554 344568888776667666654
No 74
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=30.54 E-value=1.2e+02 Score=25.62 Aligned_cols=40 Identities=10% Similarity=0.123 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHh-hcceeeEEeecCCChHHHHHHHHH
Q 026322 140 PHLEAEDLAKFVPMML-SRTFLECYIAGNIESNEAGSIIQY 179 (240)
Q Consensus 140 ~~it~edl~~f~~~~l-~~~~~~~lv~GNi~~~~A~~l~~~ 179 (240)
+..+.+++++.++..- ...++.+-+.|+|+.+.+.++.+.
T Consensus 216 Dn~~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~t 256 (284)
T PRK06096 216 DKFSPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKNYADC 256 (284)
T ss_pred CCCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhc
Confidence 4678888888877442 135778888999999888877665
No 75
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=30.35 E-value=1.1e+02 Score=25.77 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHHHHHhhcceeeEEeecCCChHHHHHHHHH
Q 026322 139 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQY 179 (240)
Q Consensus 139 l~~it~edl~~f~~~~l~~~~~~~lv~GNi~~~~A~~l~~~ 179 (240)
|++.+.+++++.++.. . ....+.+.|+|+.+.+.++++.
T Consensus 220 LDn~s~e~l~~av~~~-~-~~~~leaSGGI~~~ni~~yA~t 258 (281)
T PRK06106 220 LDNMTPDTLREAVAIV-A-GRAITEASGRITPETAPAIAAS 258 (281)
T ss_pred eCCCCHHHHHHHHHHh-C-CCceEEEECCCCHHHHHHHHhc
Confidence 3468899999998844 3 2345899999999999988655
No 76
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=30.31 E-value=1.2e+02 Score=25.51 Aligned_cols=50 Identities=12% Similarity=0.136 Sum_probs=35.3
Q ss_pred CChhHHHhhC---------CCCCHHHHHHHHHHHhh-cceeeEEeecCCChHHHHHHHHH
Q 026322 130 WPWMEELEVL---------PHLEAEDLAKFVPMMLS-RTFLECYIAGNIESNEAGSIIQY 179 (240)
Q Consensus 130 ~~~~e~l~~l---------~~it~edl~~f~~~~l~-~~~~~~lv~GNi~~~~A~~l~~~ 179 (240)
-+.+|..+++ ...+.+++++.++..-. ..++.+.+.|+|+.+.+.++++.
T Consensus 204 ~tleea~eA~~~GaD~I~LDn~~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ya~t 263 (288)
T PRK07428 204 ETLEQVQEALEYGADIIMLDNMPVDLMQQAVQLIRQQNPRVKIEASGNITLETIRAVAET 263 (288)
T ss_pred CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHc
Confidence 4556655544 46788999888874422 45778899999999888877644
No 77
>KOG4107 consensus MP1 adaptor interacting protein P14 [Signal transduction mechanisms]
Probab=30.10 E-value=1.4e+02 Score=20.93 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=36.8
Q ss_pred hhhhhhhcccccccEEEEeeeCceeEEEEeeccchHHHHHHHHHHHh
Q 026322 38 YLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKI 84 (240)
Q Consensus 38 ~l~e~~y~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~ll~~i~~~l 84 (240)
.|.+.+-+|...|.+-++-.+..|.-+.-+||-||-..+-..++..+
T Consensus 6 ALtqVLsQaNTgGV~~tlLln~EG~LLAYsGygdkdarvtaAiasni 52 (125)
T KOG4107|consen 6 ALTQVLSQANTGGVDGTLLLNKEGLLLAYSGYGDKDARVTAAIASNI 52 (125)
T ss_pred HHHHHHhhcccCCccceEEEcCCCcEEEecccCcchhHHHHHHHHHH
Confidence 34455667778888888888899999999999999777766666554
No 78
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=30.02 E-value=3.2e+02 Score=22.58 Aligned_cols=103 Identities=18% Similarity=0.186 Sum_probs=60.9
Q ss_pred EeCCCCCCCHHH-HHHHHHHHHHHHHhhhhhhhcccccccEEEEeeeCceeEEEEeeccchHHHHHHHHHHHhhcCC---
Q 026322 13 FNCPHASSSPES-EVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFK--- 88 (240)
Q Consensus 13 i~~~~~~~s~~~-~~l~~L~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~ll~~i~~~l~~~~--- 88 (240)
|.+.+...++.. ..+.+|+...+.+...+. ..+|+.+++.|=-+.+|.-+...++.+...+
T Consensus 75 FS~EN~~R~~~EV~~Lm~L~~~~l~~~~~~~---------------~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~~ 139 (250)
T PRK14840 75 FSTENFSRSKEEVAELFSLFNSQLDSQLPYL---------------HENEIRLRCIGDLSKLPQELQNNIEQASSATAHY 139 (250)
T ss_pred eehhhcCCCHHHHHHHHHHHHHHHHHHHHHH---------------HHCCCEEEEEeChhhCCHHHHHHHHHHHHHhccC
Confidence 555565555544 467777777776654332 2468999999998888888777776665432
Q ss_pred --------C---ChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCCC
Q 026322 89 --------V---KPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWP 131 (240)
Q Consensus 89 --------~---~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~ 131 (240)
+ ..++...+..++.+..+....+ |-......+...|+.+..+
T Consensus 140 ~~~~Lnla~~Yggr~EI~~A~~~~~~~v~~~~~~-~~~i~~~~i~~~L~~~~~p 192 (250)
T PRK14840 140 SRMELVLAINYGGKDELVRAFKKLHQDLANKKIS-SDDISEELISSYLDTSGLP 192 (250)
T ss_pred CceEEEEEecCCcHHHHHHHHHHHHHHHHhCCCC-hhhCCHHHHHHHhccCCCC
Confidence 1 1344445555555555444443 4445555555555544333
No 79
>PRK14436 acylphosphatase; Provisional
Probab=29.61 E-value=1e+02 Score=21.00 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=28.1
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i~ 81 (240)
.|...||+=.+....+| +++.+.|-.+++..++..+-
T Consensus 26 ~A~~l~l~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 63 (91)
T PRK14436 26 EARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWAH 63 (91)
T ss_pred HHHHcCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHh
Confidence 35556776667777778 99999999888877777664
No 80
>PRK14424 acylphosphatase; Provisional
Probab=29.42 E-value=1e+02 Score=21.17 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=27.3
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i~ 81 (240)
.|...||.=.+....+| +++.+.|-.+++..++..+-
T Consensus 29 ~A~~~gl~G~V~N~~dG~Vei~~qG~~~~v~~f~~~l~ 66 (94)
T PRK14424 29 EAHALGLRGWVANLEDGTVEAMIQGPAAQIDRMLAWLR 66 (94)
T ss_pred HHHHcCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHH
Confidence 35556666566666677 99999999988777777664
No 81
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=29.06 E-value=1e+02 Score=24.88 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=31.7
Q ss_pred HHHhhcceeeEEeecCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcCccceeEeCCCCeEEEEeC
Q 026322 152 PMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQ 219 (240)
Q Consensus 152 ~~~l~~~~~~~lv~GNi~~~~A~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~l~~g~~~~~~~~ 219 (240)
..+.+..++-+..||| ..+.+++.+.++- +.++ ..+.||.|.+++|+..
T Consensus 169 p~l~~Gk~VlI~AHGN----SlRaLiK~L~~iS------------d~dI---~~l~IPtg~Plvyeld 217 (230)
T COG0588 169 PNLKSGKNVLIVAHGN----SLRALIKYLEGIS------------DEDI---LDLNIPTGIPLVYELD 217 (230)
T ss_pred HHHhCCCeEEEEecch----hHHHHHHHHhCCC------------HHHh---hhcccCCCCcEEEEEC
Confidence 3345677888999999 3445555553221 1222 3478999999999965
No 82
>PRK14446 acylphosphatase; Provisional
Probab=28.99 E-value=1.2e+02 Score=20.46 Aligned_cols=37 Identities=24% Similarity=0.239 Sum_probs=27.8
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i~ 81 (240)
.|...|+.=.+....+| +++.+.|-.+.+..++..+-
T Consensus 24 ~A~~lgl~G~V~N~~dGsVei~~qG~~~~l~~f~~~l~ 61 (88)
T PRK14446 24 RAVALGLVGHARNQADGSVEVVAAGSAAALEALEAWLW 61 (88)
T ss_pred HHeeCCeEEEEEECCCCCEEEEEEeCHHHHHHHHHHHh
Confidence 46667887778878888 99999997776666555554
No 83
>PRK14451 acylphosphatase; Provisional
Probab=28.92 E-value=1.1e+02 Score=20.77 Aligned_cols=37 Identities=19% Similarity=0.128 Sum_probs=28.4
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i~ 81 (240)
.|...|++=.+....+| +++.+.|-.+++..++..+-
T Consensus 25 ~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 62 (89)
T PRK14451 25 LAEQLMISGWARNLADGRVEVFACGKEDKLEEFYTWLQ 62 (89)
T ss_pred HHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHh
Confidence 45556777777777788 99999998888777766664
No 84
>COG3411 Ferredoxin [Energy production and conversion]
Probab=28.46 E-value=74 Score=20.22 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=18.9
Q ss_pred eeeEEeecCCChHHHHHHHHHHH
Q 026322 159 FLECYIAGNIESNEAGSIIQYIE 181 (240)
Q Consensus 159 ~~~~lv~GNi~~~~A~~l~~~~~ 181 (240)
+-+..-++++++++|.++++.+.
T Consensus 23 YpegvWY~~V~p~~a~rIv~~hl 45 (64)
T COG3411 23 YPEGVWYTRVDPEDARRIVQSHL 45 (64)
T ss_pred ecCCeeEeccCHHHHHHHHHHHH
Confidence 34557789999999999998864
No 85
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=28.03 E-value=36 Score=21.83 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=13.4
Q ss_pred eecCCChHHHHHHHHH
Q 026322 164 IAGNIESNEAGSIIQY 179 (240)
Q Consensus 164 v~GNi~~~~A~~l~~~ 179 (240)
.+|+|++++|.+++..
T Consensus 2 ~~g~isr~~Ae~~L~~ 17 (77)
T PF00017_consen 2 FHGFISRQEAERLLMQ 17 (77)
T ss_dssp BEESSHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHh
Confidence 4899999999987655
No 86
>PRK14427 acylphosphatase; Provisional
Probab=27.48 E-value=1.3e+02 Score=20.53 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=28.7
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQK 83 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i~~~ 83 (240)
.|...||+=.+....+| +++.+.|-.+++..|+..+-+.
T Consensus 28 ~A~~lgl~G~V~N~~dGsVei~~qG~~~~i~~f~~~l~~~ 67 (94)
T PRK14427 28 KAEELGLTGTVRNLDDGSVALVAEGTGEQVEKLLDWLNSD 67 (94)
T ss_pred HHHHcCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHhhC
Confidence 35556776666666778 9999999888877777766543
No 87
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=27.46 E-value=3.4e+02 Score=22.07 Aligned_cols=156 Identities=7% Similarity=0.100 Sum_probs=84.0
Q ss_pred CCceeEEEEEEeCCCCCCCHHH-HHHHHHHHHHHHHhhhhhhhcccccccEEEEeeeCceeEEEEeeccchHHHHHHHHH
Q 026322 3 STPKAFVKIYFNCPHASSSPES-EVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIF 81 (240)
Q Consensus 3 ~~Pk~~i~~~i~~~~~~~s~~~-~~l~~L~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~ll~~i~ 81 (240)
+++-+.++ .|.+.+...++.. ..+..|+...+....... ..+|+.|++.|=-+.+|.-+...+
T Consensus 37 GI~~lT~y-aFS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~~~---------------~~~~i~vr~iG~~~~Lp~~l~~~i 100 (229)
T PRK10240 37 GIEALTLY-AFSSENWNRPAQEVSALMELFVWALDSEVKSL---------------HRHNVRLRIIGDTSRFNSRLQERI 100 (229)
T ss_pred CCCEEEEE-eeehhhcCcCHHHHHHHHHHHHHHHHHHHHHH---------------HHCCcEEEEEeChhhCCHHHHHHH
Confidence 34444443 2445555444433 667777777766544331 246889999998888887776666
Q ss_pred HHhhcCC-----------C---ChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCCChhHH-HhhCCCCCHHH
Q 026322 82 QKIAQFK-----------V---KPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEE-LEVLPHLEAED 146 (240)
Q Consensus 82 ~~l~~~~-----------~---~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~e~-l~~l~~it~ed 146 (240)
+.+.... + ..++...+..++.+..++...+ |-......+...|+.+..+..|+ +..=-..-+.+
T Consensus 101 ~~~e~~T~~~~~~~Lnla~~Yggr~EI~~A~~~~~~~v~~g~~~-~~~i~e~~i~~~L~t~~~pdpDLlIRTsGe~RLSn 179 (229)
T PRK10240 101 RKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEQVQQGNLQ-PDQIDEEMLNQHICMHELAPVDLVIRTGGEHRISN 179 (229)
T ss_pred HHHHHHhcCCCCeEEEEEeccCCHHHHHHHHHHHHHHHHcCCCC-hhhCCHHHHHHHhccCCCCCCCEEEeCCCcccccC
Confidence 6654321 1 1345555555666666655554 55555666666666544443333 22222333444
Q ss_pred HHHHHHHHhhcceeeEEeec----CCChHHHHHHHHHH
Q 026322 147 LAKFVPMMLSRTFLECYIAG----NIESNEAGSIIQYI 180 (240)
Q Consensus 147 l~~f~~~~l~~~~~~~lv~G----Ni~~~~A~~l~~~~ 180 (240)
|.=| +..+.++++.. +++..+-...+...
T Consensus 180 FLlW-----Q~ayaElyF~~~lWPdf~~~df~~al~~y 212 (229)
T PRK10240 180 FLLW-----QIAYAELYFTDVLWPDFDEQDFEGALNAF 212 (229)
T ss_pred ChHH-----HHhheEEEECCCCCCcCCHHHHHHHHHHH
Confidence 4433 33445555544 45666655555444
No 88
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=27.16 E-value=3.6e+02 Score=22.26 Aligned_cols=157 Identities=13% Similarity=0.168 Sum_probs=83.5
Q ss_pred CCCceeEEEEEEeCCCCCCCHHH-HHHHHHHHHHHHHhhhhhhhcccccccEEEEeeeCceeEEEEeeccchHHHHHHHH
Q 026322 2 FSTPKAFVKIYFNCPHASSSPES-EVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETI 80 (240)
Q Consensus 2 F~~Pk~~i~~~i~~~~~~~s~~~-~~l~~L~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~ll~~i 80 (240)
++++-+.++. |...+...++.. ..+.+|+...+.+.+.. ...+|+.|++.|=-+.+|.-+...
T Consensus 65 ~GI~~vTvYa-FS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~~---------------~~~~~iri~viG~~~~Lp~~~~~~ 128 (251)
T PRK14830 65 LGVKVLTLYA-FSTENWKRPKDEVKFLMNLPVEFLDKFVPE---------------LIENNVKVNVIGDTDRLPEHTLRA 128 (251)
T ss_pred cCCCEEEEEE-EehhhcCCCHHHHHHHHHHHHHHHHHHHHH---------------HHHcCCEEEEEcChhhCCHHHHHH
Confidence 4566677765 544554444433 45666666665554332 124688899999888888777666
Q ss_pred HHHhhcCC-----------C---ChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCCChhHH-HhhCCCCCHH
Q 026322 81 FQKIAQFK-----------V---KPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEE-LEVLPHLEAE 145 (240)
Q Consensus 81 ~~~l~~~~-----------~---~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~e~-l~~l~~it~e 145 (240)
++.+.... + ..++...+..++.++.+....+ |-......+...|+.+..+..|+ +..=-+.-+.
T Consensus 129 ~~~~e~~T~~~~~~~Lnia~~YggR~EI~~A~~~~~~~v~~g~l~-~~~I~e~~i~~~L~~~~~pdpDLlIRTsGe~RLS 207 (251)
T PRK14830 129 LEKAIEKTKNNTGLILNFALNYGGRAEIVSAVKEIAKDVLDGKLN-PEDITEELISNYLMTKGLPDPDLLIRTSGELRLS 207 (251)
T ss_pred HHHHHHHccCCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCCC-hHhCCHHHHHHHhCcCCCCCCCEEEeCCCCCccc
Confidence 65544321 1 1345555555666665554444 54555566666666554443343 2232334445
Q ss_pred HHHHHHHHHhhcceeeEEeec----CCChHHHHHHHHHH
Q 026322 146 DLAKFVPMMLSRTFLECYIAG----NIESNEAGSIIQYI 180 (240)
Q Consensus 146 dl~~f~~~~l~~~~~~~lv~G----Ni~~~~A~~l~~~~ 180 (240)
+|.=| +..+.+++... +++..+-...+...
T Consensus 208 nFLlW-----Q~ayaEl~F~~~lWPdf~~~d~~~aL~~y 241 (251)
T PRK14830 208 NFLLW-----QLAYSEFYFTDVLWPDFDEEELLKAIKDY 241 (251)
T ss_pred CChHH-----HHcceEEEECCCCCCcCCHHHHHHHHHHH
Confidence 55433 33345554433 34555555444433
No 89
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=26.81 E-value=1.4e+02 Score=20.06 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=26.5
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 82 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i~~ 82 (240)
.|...|+.=.+....+| +.+.+.|-.+++..++..+-+
T Consensus 26 ~A~~~gl~G~V~N~~dg~V~i~~~G~~~~l~~f~~~l~~ 64 (91)
T PF00708_consen 26 IARKLGLTGWVRNLPDGSVEIEAEGEEEQLEEFIKWLKK 64 (91)
T ss_dssp HHHHTT-EEEEEE-TTSEEEEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHhCCceEEEECCCCEEEEEEEeCHHHHHHHHHHHHh
Confidence 34455665557777788 999999988887777766655
No 90
>PRK14448 acylphosphatase; Provisional
Probab=26.66 E-value=1.2e+02 Score=20.56 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=27.1
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i~ 81 (240)
.|...|++=.+....+| +++.+.|-.+++..+++.+-
T Consensus 24 ~A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~ 61 (90)
T PRK14448 24 EATKIGIKGYVKNRPDGSVEVVAVGSDAQIAAFRDWLQ 61 (90)
T ss_pred HHHHhCCEEEEEECCCCCEEEEEEeCHHHHHHHHHHHH
Confidence 34445665556666777 99999999988877777764
No 91
>PRK14447 acylphosphatase; Provisional
Probab=26.54 E-value=1.3e+02 Score=20.53 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=28.2
Q ss_pred cccccccEEEEeeeCce--eEEEEeeccchHHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG--FEVTVVGYNHKLRILLETIF 81 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g--i~l~v~G~s~kl~~ll~~i~ 81 (240)
.|...|+.=.+....+| +.+.+.|-.+++..|+..+-
T Consensus 26 ~A~~~gl~G~V~N~~dG~~Vei~~qG~~~~l~~f~~~l~ 64 (95)
T PRK14447 26 VANRNGVRGWVRNRSDGRTVEAVLEGPRDAVLKVIEWAR 64 (95)
T ss_pred HHhhcCeEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh
Confidence 35556776666666778 99999999999888877664
No 92
>PRK14428 acylphosphatase; Provisional
Probab=26.48 E-value=1.2e+02 Score=20.97 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=28.4
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i~ 81 (240)
.|...||.=.+....+| +++.+.|-.+.+..++..+-
T Consensus 30 ~A~~lgL~G~V~N~~dGsVei~~qG~~~~i~~fi~~l~ 67 (97)
T PRK14428 30 QARRLGVQGWVRNCRDGSVELEAQGSSDAVQALVEQLA 67 (97)
T ss_pred HHHHcCCEEEEEECCCCEEEEEEEcCHHHHHHHHHHHh
Confidence 45556777777777777 99999998888877777665
No 93
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=26.30 E-value=1.2e+02 Score=20.02 Aligned_cols=23 Identities=9% Similarity=0.018 Sum_probs=11.3
Q ss_pred HHHHHHHHhcc-CCCCChhHHHhh
Q 026322 116 LAMYYCSLILQ-DQTWPWMEELEV 138 (240)
Q Consensus 116 ~a~~~~~~ll~-~~~~~~~e~l~~ 138 (240)
++-+++..++. +.+|+.+++.++
T Consensus 3 HgHeVL~mml~~~~~~t~~~L~~~ 26 (77)
T TIGR03853 3 HGHEVLNLMLASGEPYTRESLKAA 26 (77)
T ss_pred hHHHHHHHHHHcCCCcCHHHHHHH
Confidence 34455555444 345555555443
No 94
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.03 E-value=3.8e+02 Score=22.17 Aligned_cols=157 Identities=13% Similarity=0.132 Sum_probs=82.3
Q ss_pred CCceeEEEEEEeCCCCCCCHHH-HHHHHHHHHHHHHhhhhhhhcccccccEEEEeeeCceeEEEEeeccchHHHHHHHHH
Q 026322 3 STPKAFVKIYFNCPHASSSPES-EVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIF 81 (240)
Q Consensus 3 ~~Pk~~i~~~i~~~~~~~s~~~-~~l~~L~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~ll~~i~ 81 (240)
+++-+.++ .|.+.+...++.. ..+.+|+...+.+.+.+. ..+|+.+++.|=-+.+|.-+...+
T Consensus 62 gI~~lTvy-aFS~EN~~Rp~~EV~~Lm~L~~~~l~~~~~~~---------------~~~~irv~~iGd~~~Lp~~l~~~i 125 (253)
T PRK14832 62 GIKALTAY-AFSTENWQRPIEEVDFLMLLFERLLRRELAQM---------------HREGVRISFIGDLSALPKSLQTEM 125 (253)
T ss_pred CCCEEEEE-EeehhhcCCCHHHHHHHHHHHHHHHHHHHHHH---------------HhcCCEEEEEeCchhCCHHHHHHH
Confidence 34444443 2555555545433 456666666666544321 356889999998888887777766
Q ss_pred HHhhcCC-----------C---ChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCCChhHH-HhhCCCCCHHH
Q 026322 82 QKIAQFK-----------V---KPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEE-LEVLPHLEAED 146 (240)
Q Consensus 82 ~~l~~~~-----------~---~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~e~-l~~l~~it~ed 146 (240)
+.+...+ + ..++-..+..++.+..+....+ |-......+...|+.+..+..|+ +..=-+.-+.+
T Consensus 126 ~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~k~~~~~v~~g~~~-~~~i~e~~i~~~L~~~~~Pd~DLlIRTsGE~RLSn 204 (253)
T PRK14832 126 ERSMTETLNNQAIHFTVAVNYGSRNEITRACRQVAELVQQGKLS-ADAVNEQLVEQHLYTADTPPPDLLIRTSGEMRLSN 204 (253)
T ss_pred HHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHhCCCC-hhhCCHHHHHHhhCcCCCCCCCEEEECCCcccccC
Confidence 6654422 1 1344455555555555544433 44444455666666443333332 22223333444
Q ss_pred HHHHHHHHhhcceeeEEeec----CCChHHHHHHHHHHH
Q 026322 147 LAKFVPMMLSRTFLECYIAG----NIESNEAGSIIQYIE 181 (240)
Q Consensus 147 l~~f~~~~l~~~~~~~lv~G----Ni~~~~A~~l~~~~~ 181 (240)
|.=| +..+.+++..- +++..+-...+....
T Consensus 205 FLlW-----Q~ayaElyF~~~lWPdf~~~df~~al~~y~ 238 (253)
T PRK14832 205 FLLW-----QMAYTEMYFTDILWPDFDRAAFHQALLSYQ 238 (253)
T ss_pred cHHH-----HHhheEEEECCCCCCcCCHHHHHHHHHHHH
Confidence 4333 33455555544 356666555555443
No 95
>PRK14438 acylphosphatase; Provisional
Probab=25.97 E-value=1.3e+02 Score=20.37 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=27.5
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i~ 81 (240)
.|...|++=.+....+| +++.+.|-.+++..++..+-
T Consensus 25 ~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 62 (91)
T PRK14438 25 TAQRLNVSGWVKNLPNGSVQGCFEGEETDVAALIDWCH 62 (91)
T ss_pred HHHHcCCEEEEEECCCCEEEEEEEECHHHHHHHHHHHh
Confidence 34556776667777778 99999998888777776664
No 96
>PRK14422 acylphosphatase; Provisional
Probab=25.27 E-value=1.4e+02 Score=20.29 Aligned_cols=38 Identities=21% Similarity=0.127 Sum_probs=28.5
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 82 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i~~ 82 (240)
.|...||.=-+....+| +++.+.|-.+++..|+..+-+
T Consensus 28 ~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 66 (93)
T PRK14422 28 RALELGLTGYAANLADGRVQVVAEGPRAACEKLLQLLRG 66 (93)
T ss_pred HHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHHh
Confidence 45556776666667778 999999988888777776655
No 97
>PRK14442 acylphosphatase; Provisional
Probab=25.04 E-value=1.4e+02 Score=20.31 Aligned_cols=37 Identities=22% Similarity=0.158 Sum_probs=28.7
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i~ 81 (240)
.|...||+=.+....+| +++.+.|-.+++..++..+-
T Consensus 26 ~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 63 (91)
T PRK14442 26 EADRLELDGWVRNLDDGRVEVVWEGEEDRAKALERWLG 63 (91)
T ss_pred HHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHh
Confidence 46667887777777888 99999998888777766664
No 98
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.01 E-value=1.4e+02 Score=24.97 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHHHhhcceeeEEeecCCChHHHHHHHHH
Q 026322 140 PHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQY 179 (240)
Q Consensus 140 ~~it~edl~~f~~~~l~~~~~~~lv~GNi~~~~A~~l~~~ 179 (240)
..++.+++++.++.. ..++.+.+.|+|+.+.+.++.+.
T Consensus 216 D~~~~e~l~~~v~~~--~~~i~leAsGGIt~~ni~~~a~t 253 (277)
T PRK05742 216 DELSLDDMREAVRLT--AGRAKLEASGGINESTLRVIAET 253 (277)
T ss_pred CCCCHHHHHHHHHHh--CCCCcEEEECCCCHHHHHHHHHc
Confidence 468888888887643 23678999999999988877654
No 99
>PRK00810 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=24.55 E-value=1.8e+02 Score=20.81 Aligned_cols=41 Identities=15% Similarity=0.197 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhcCC----CChhhHHHHHHHHHHHHhhhcccChHH
Q 026322 75 ILLETIFQKIAQFK----VKPDRFSVIKEMVTKEYHNNKFLQPFQ 115 (240)
Q Consensus 75 ~ll~~i~~~l~~~~----~~~~~F~~~k~~l~~~~~n~~~~~p~~ 115 (240)
.+|+.+-+.|..-. .+.+.+..+|.-+.+.|..+..+.|..
T Consensus 40 HILKrF~~yL~~~~~~~~~e~~~~~~yr~aL~~AY~dF~~Stp~~ 84 (113)
T PRK00810 40 HILKRMGQYLAQEDFAGLPEAEARARCRAVLERAYADFVASSPLD 84 (113)
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHccCCHhH
Confidence 34566666665433 235678999999999999999887854
No 100
>PF11149 DUF2924: Protein of unknown function (DUF2924); InterPro: IPR021322 This entry is represented by Bacteriophage WO, Gp30. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This bacterial family of proteins has no known function.
Probab=24.42 E-value=2.6e+02 Score=20.79 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=33.4
Q ss_pred HHHhhCCCCCHHHHHHHHHHHhh---------------cceeeEEeecCCChHHHHHHHHHH
Q 026322 134 EELEVLPHLEAEDLAKFVPMMLS---------------RTFLECYIAGNIESNEAGSIIQYI 180 (240)
Q Consensus 134 e~l~~l~~it~edl~~f~~~~l~---------------~~~~~~lv~GNi~~~~A~~l~~~~ 180 (240)
..+.+|+.+++.+++.--.++|. .-.++.+.+|.++.+.-..+-...
T Consensus 3 ~~la~L~~l~~~eL~~~W~~~fg~~pp~~~r~~L~~rlAyriQe~a~GgL~~~~~~rL~~la 64 (136)
T PF11149_consen 3 AQLAALPDLPMPELRARWRRLFGSPPPHHNRDFLERRLAYRIQELAFGGLSEETRRRLDALA 64 (136)
T ss_pred HHHhhcccCCHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 45778888888888876666654 235688899999987766554443
No 101
>PRK14423 acylphosphatase; Provisional
Probab=23.96 E-value=1.5e+02 Score=20.10 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=26.0
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i~ 81 (240)
.|...||.=.+....+| +++.+.|-.+++..++..+-
T Consensus 27 ~A~~lgl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 64 (92)
T PRK14423 27 TARELGVDGWVRNLDDGRVEAVFEGPRDAVEAMVEWCH 64 (92)
T ss_pred HHHHcCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHH
Confidence 34555676666666778 89999998777666666554
No 102
>PF14162 YozD: YozD-like protein
Probab=23.85 E-value=68 Score=19.37 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=26.6
Q ss_pred HHHHHHHHHhccCCCCChhHHHhhCCCCCHHHHH
Q 026322 115 QLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLA 148 (240)
Q Consensus 115 ~~a~~~~~~ll~~~~~~~~e~l~~l~~it~edl~ 148 (240)
..|......+...++.+.++-+..+..||++-+.
T Consensus 12 EIAefFy~eL~kRGyvP~e~El~eiADItFeYll 45 (57)
T PF14162_consen 12 EIAEFFYHELVKRGYVPTEEELEEIADITFEYLL 45 (57)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Confidence 4566667778888888888888889999988664
No 103
>PRK14443 acylphosphatase; Provisional
Probab=23.66 E-value=1.5e+02 Score=20.35 Aligned_cols=38 Identities=13% Similarity=0.262 Sum_probs=26.9
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 82 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i~~ 82 (240)
.|...||+=.+....+| +++.+.|-.+.+..++..+.+
T Consensus 26 ~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~~ 64 (93)
T PRK14443 26 VAYKYDISGTVKNLDDGSVEIHAIAEEENLNKFIDAIKK 64 (93)
T ss_pred HHHHcCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHhc
Confidence 45556776666665566 999999988887666666644
No 104
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=23.44 E-value=1.3e+02 Score=18.97 Aligned_cols=26 Identities=12% Similarity=0.215 Sum_probs=19.9
Q ss_pred hCCCCCHHHHHHHHHHHh---hcceeeEE
Q 026322 138 VLPHLEAEDLAKFVPMML---SRTFLECY 163 (240)
Q Consensus 138 ~l~~it~edl~~f~~~~l---~~~~~~~l 163 (240)
-+.+++.+|+++|...++ .+.++|+.
T Consensus 12 Gvd~lsT~dI~~y~~~y~~~~~~~~IEWI 40 (62)
T PF10309_consen 12 GVDELSTDDIKAYFSEYFDEEGPFRIEWI 40 (62)
T ss_pred cCCCCCHHHHHHHHHHhcccCCCceEEEe
Confidence 467889999999999885 35677664
No 105
>PRK14441 acylphosphatase; Provisional
Probab=23.16 E-value=1.8e+02 Score=19.86 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=27.9
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i~ 81 (240)
.|...||.=-+....+| +++.+.|-.+.+..++..+-
T Consensus 27 ~A~~lgL~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 64 (93)
T PRK14441 27 EARRLGVEGWVRNLPDGRVEAEAEGERAAVGALVRWCH 64 (93)
T ss_pred HHhhcCcEEEEEECCCCEEEEEEEECHHHHHHHHHHHh
Confidence 46666776667777778 99999998877777766653
No 106
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=22.93 E-value=3.4e+02 Score=26.11 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=51.6
Q ss_pred HHHHHHHhhhhhhhcccccccEEEEeeeCceeEEEEeeccchHHHHHHHHHHHhhcCC
Q 026322 31 FTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFK 88 (240)
Q Consensus 31 ~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~ll~~i~~~l~~~~ 88 (240)
+...+...|....-+|..||.+.+++...+.-.|++.|.-+-++..+...+..+..+.
T Consensus 469 ~~~~l~~~l~~l~~~~~~~g~~~~~~~~~~~w~l~l~g~~~~~~~~~~~~~~~l~~~~ 526 (696)
T TIGR02110 469 LALALQRQLRPLLADARHAGVNGSWQATGASWQLLLNGPRSPMRAVFSVALALLALAA 526 (696)
T ss_pred HHHHHHHHHHHHHHHHHhcCceeEEEEcCCeEEEEcCCCchhHHHHHHHHHHHHhCCC
Confidence 5566788888888899999999999998888899999999999999999999998873
No 107
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=22.79 E-value=1.1e+02 Score=19.89 Aligned_cols=26 Identities=8% Similarity=0.321 Sum_probs=19.8
Q ss_pred EeeeCceeEEEEeeccchHHHHHHHH
Q 026322 55 INHTESGFEVTVVGYNHKLRILLETI 80 (240)
Q Consensus 55 ~~~~~~gi~l~v~G~s~kl~~ll~~i 80 (240)
+..+.+.+.+.+.|-++++..+++.+
T Consensus 31 vd~~~~~~iie~tG~~~kid~fi~~l 56 (75)
T PF10369_consen 31 VDVSPDSIIIELTGTPEKIDAFIKLL 56 (75)
T ss_dssp EEEETTEEEEEEEE-HHHHHHHHHHS
T ss_pred EEECCCEEEEEEcCCHHHHHHHHHHh
Confidence 45577899999999999987776654
No 108
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=22.74 E-value=52 Score=25.03 Aligned_cols=60 Identities=17% Similarity=0.079 Sum_probs=36.0
Q ss_pred HHHHHHHhccCCCCChhHHHhhCCCCCHHHHHHHH------HHHhhcceeeEEeecCCChHHHHHH
Q 026322 117 AMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFV------PMMLSRTFLECYIAGNIESNEAGSI 176 (240)
Q Consensus 117 a~~~~~~ll~~~~~~~~e~l~~l~~it~edl~~f~------~~~l~~~~~~~lv~GNi~~~~A~~l 176 (240)
|...+..+|..+.|+..++-+.-..++.++-.... ..++.+.+--+.-.||++-.-....
T Consensus 8 alHaLNnLlQ~~~ft~~dL~~Ia~~Ld~~E~~~~~~~~~~~~~~~~~~s~n~~~~GnysinVL~~A 73 (157)
T PF02099_consen 8 ALHALNNLLQGPYFTAVDLDEIAQELDEEERSLMAEDSWTPLSFLFNPSRNVDGTGNYSINVLMAA 73 (157)
T ss_dssp HHHHHHHHCTSS-S-HHHHHHHHHHHHHHHHHHHHCTSHHHHHHHTSTSSTCSTTSTCECHHHHHH
T ss_pred HHHHHHHHhhhhhcCHHHHHHHHHHhChhhhhhhhccCccchhhccccccCccccCCcCHHHHHHH
Confidence 56678889999999998876665555554432211 2344455555566799996544433
No 109
>PRK14426 acylphosphatase; Provisional
Probab=22.49 E-value=1.6e+02 Score=19.97 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=26.7
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 82 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i~~ 82 (240)
.|...|+.=.+....+| +++.+.|-.+++..++..+-+
T Consensus 26 ~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 64 (92)
T PRK14426 26 EALKLGLTGYAKNLDDGSVEVVACGEEEQVEKLMEWLKE 64 (92)
T ss_pred HHHHhCCEEEEEECCCCcEEEEEEeCHHHHHHHHHHHhc
Confidence 45556775556655566 999999998887777666643
No 110
>PRK14452 acylphosphatase; Provisional
Probab=22.47 E-value=1.5e+02 Score=20.92 Aligned_cols=36 Identities=25% Similarity=0.118 Sum_probs=27.3
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETI 80 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i 80 (240)
.|...||+=.+....+| +++.+.|-.+.+..+...+
T Consensus 42 ~A~~lgL~G~V~N~~dGsVeI~~qG~~~~ve~F~~~l 78 (107)
T PRK14452 42 RALDLGLSGWVRNLSDGSVEVQAEGPPLALSELRAWC 78 (107)
T ss_pred HHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHH
Confidence 45667887777777888 9999999988877664333
No 111
>PRK14421 acylphosphatase; Provisional
Probab=21.86 E-value=1.6e+02 Score=20.49 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=27.7
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i~ 81 (240)
.|...||+=.+....+| +++.+.|-.+++..|+..+-
T Consensus 26 ~A~~lgL~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 63 (99)
T PRK14421 26 TAEALGLEGWVRNRRDGSVEALFAGPADAVAEMIARCR 63 (99)
T ss_pred HHHHhCCEEEEEECCCCEEEEEEeCCHHHHHHHHHHHH
Confidence 34556776666667778 99999998888877777664
No 112
>PF04444 Dioxygenase_N: Catechol dioxygenase N terminus; InterPro: IPR007535 This domain is the N-terminal region of catechol, chlorocatechol or hydroxyquinol 1,2-dioxygenase proteins. This region is always found adjacent to the dioxygenase domain (IPR000627 from INTERPRO). Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0005506 iron ion binding, 0018576 catechol 1,2-dioxygenase activity, 0009712 catechol-containing compound metabolic process, 0055114 oxidation-reduction process; PDB: 3O6R_B 1S9A_A 3O6J_A 3O5U_B 3O32_B 3HHY_A 3HHX_A 3HJS_A 3HJQ_A 3HKP_A ....
Probab=21.74 E-value=2.2e+02 Score=18.59 Aligned_cols=33 Identities=9% Similarity=0.183 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHh
Q 026322 74 RILLETIFQKIAQFKVKPDRFSVIKEMVTKEYH 106 (240)
Q Consensus 74 ~~ll~~i~~~l~~~~~~~~~F~~~k~~l~~~~~ 106 (240)
..++..+.+.+...++++++|..+.+-+.+-=+
T Consensus 9 ~~lv~~lh~~i~e~~lT~~E~~~av~~L~~~G~ 41 (74)
T PF04444_consen 9 ARLVRHLHDFIREVDLTEDEWWAAVDFLNRVGQ 41 (74)
T ss_dssp HHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 345555566667778999999999887776655
No 113
>PRK14450 acylphosphatase; Provisional
Probab=21.68 E-value=1.8e+02 Score=19.68 Aligned_cols=37 Identities=24% Similarity=0.189 Sum_probs=27.0
Q ss_pred cccccccEEEEeeeCce--eEEEEeeccchHHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG--FEVTVVGYNHKLRILLETIF 81 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g--i~l~v~G~s~kl~~ll~~i~ 81 (240)
.|...|+.=.+....+| +++.+.|-.+.+..++..+-
T Consensus 24 ~A~~~~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l~ 62 (91)
T PRK14450 24 QATRLGLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLLR 62 (91)
T ss_pred HHHHcCCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh
Confidence 45556675556666677 89999998888877777664
No 114
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=21.66 E-value=4e+02 Score=20.91 Aligned_cols=54 Identities=15% Similarity=0.304 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhhh----hhhhcccccccEEEEe--eeCce--eEEE-Eeeccch
Q 026322 19 SSSPESEVLTDIFTRLLLDYLN----EYAYYAQVAGLDYGIN--HTESG--FEVT-VVGYNHK 72 (240)
Q Consensus 19 ~~s~~~~~l~~L~~~ll~~~l~----e~~y~a~~agl~~~~~--~~~~g--i~l~-v~G~s~k 72 (240)
.++.+..++..++..+++..+. -+.|.-++.|..|... ...+| +.++ .-|||+-
T Consensus 60 ~~~~k~~a~~Gt~rslI~NmI~GVt~Gf~~~LeivGvGyra~~~v~~~g~~L~l~N~LG~Sh~ 122 (190)
T PTZ00027 60 FGTPSHLACIRTVCSHIKNMMTGVTKKFQYKMRLVYAHFPINSNITDNGKTIEIRNFLGEKRV 122 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhhcCCEEEEEEEEEeeeeEEEEEcCCCCEEEEEccCCCcee
Confidence 3456667888888888877553 4788888999998888 32355 6665 5899965
No 115
>PRK07413 hypothetical protein; Validated
Probab=21.54 E-value=2.8e+02 Score=24.49 Aligned_cols=68 Identities=15% Similarity=0.069 Sum_probs=52.1
Q ss_pred HHHHHHHHHhccCCCCC---hhHHHhhC--CCCCHHHHHHHHHHHhhcceeeEEeecCCChHHHHHHHHHHHHhh
Q 026322 115 QLAMYYCSLILQDQTWP---WMEELEVL--PHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVF 184 (240)
Q Consensus 115 ~~a~~~~~~ll~~~~~~---~~e~l~~l--~~it~edl~~f~~~~l~~~~~~~lv~GNi~~~~A~~l~~~~~~~l 184 (240)
..+.......+..+.|. .+|+.-++ .-|+.+++.++.++ .+..+++.+.|.--+++.+++++.+.+.-
T Consensus 111 ~~~~~~a~~~i~sg~ydlvILDEi~~Al~~gll~~eevl~~L~~--rP~~~evVLTGR~ap~~Lie~ADlVTEm~ 183 (382)
T PRK07413 111 QRGWDIAKGAIASGLYSVVVLDELNPVLDLGLLPVDEVVNTLKS--RPEGLEIIITGRAAPQSLLDIADLHSEMR 183 (382)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHh--CCCCCEEEEeCCCCCHHHHHhCCeeEEec
Confidence 34555666666677776 57877766 46899999988873 66789999999999999999988886643
No 116
>smart00311 PWI PWI, domain in splicing factors.
Probab=21.38 E-value=2.4e+02 Score=18.18 Aligned_cols=38 Identities=13% Similarity=0.063 Sum_probs=27.4
Q ss_pred HHHHHhccCCCCChhHHHhhCCCCCHHHHHHHHHHHhhc
Q 026322 119 YYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSR 157 (240)
Q Consensus 119 ~~~~~ll~~~~~~~~e~l~~l~~it~edl~~f~~~~l~~ 157 (240)
++....+.++. +++++...|+...++|-..|+.++++.
T Consensus 30 d~i~~~l~~~~-~~~~l~~~L~~~~f~da~~Fv~~Lw~~ 67 (74)
T smart00311 30 EFILSQIRQHK-GPQAKLLQINLTGFEDAEEFVDKLWRL 67 (74)
T ss_pred HHHHHHHHhCC-ChHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 33334444332 788888888888888999999988865
No 117
>COG5469 Predicted metal-binding protein [Function unknown]
Probab=21.12 E-value=1.8e+02 Score=21.55 Aligned_cols=25 Identities=12% Similarity=0.412 Sum_probs=18.9
Q ss_pred eEEeecCCChHH-HHHHHHHHHHhhc
Q 026322 161 ECYIAGNIESNE-AGSIIQYIEDVFF 185 (240)
Q Consensus 161 ~~lv~GNi~~~~-A~~l~~~~~~~l~ 185 (240)
=.++.||+++++ |.++++...-...
T Consensus 86 ~sYLFgdL~p~d~a~dLl~~a~ly~~ 111 (143)
T COG5469 86 PSYLFGDLTPDDSASDLLEFAQLYAN 111 (143)
T ss_pred ceEEEccCCccccHHHHHHHHHHhhh
Confidence 457899999999 8888877654443
No 118
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=21.09 E-value=2.5e+02 Score=29.74 Aligned_cols=67 Identities=12% Similarity=0.126 Sum_probs=48.5
Q ss_pred EEeeccchHHHHHHHHHHHhhcCCCC---------------hhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCC
Q 026322 65 TVVGYNHKLRILLETIFQKIAQFKVK---------------PDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQT 129 (240)
Q Consensus 65 ~v~G~s~kl~~ll~~i~~~l~~~~~~---------------~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~~ 129 (240)
-+.||..|+...++.+++.+.++.+. +...+...+.+..++.....+.|-++....+...+....
T Consensus 797 IL~Gy~~~l~~~~~~li~~Lr~p~Lp~~ew~~~~s~~~~Rlp~~l~~~~~~~~~~~~s~~t~FPakql~~il~~~~~~~~ 876 (2196)
T KOG0368|consen 797 ILAGYDPKLDETVQELIKVLRDPELPYLEWQEHISALANRLPPNLDKSLESLVAKSASRITQFPAKQLAKILDAHLATLN 876 (2196)
T ss_pred HHhccCcchhHHHHHHHHHhcCCCcChHHHHHHHHHHhccCChhHHHHHHHHHHHHhhhcccCcHHHHHHHHHHHhhccc
Confidence 36688889999999999999998762 344555556666666666667898888777777665443
Q ss_pred CC
Q 026322 130 WP 131 (240)
Q Consensus 130 ~~ 131 (240)
..
T Consensus 877 ~~ 878 (2196)
T KOG0368|consen 877 RA 878 (2196)
T ss_pred cc
Confidence 33
No 119
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=20.95 E-value=1.6e+02 Score=19.46 Aligned_cols=38 Identities=16% Similarity=0.030 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHhccC--CCCChhHHHhhCCCCCHHHHHHH
Q 026322 113 PFQLAMYYCSLILQD--QTWPWMEELEVLPHLEAEDLAKF 150 (240)
Q Consensus 113 p~~~a~~~~~~ll~~--~~~~~~e~l~~l~~it~edl~~f 150 (240)
...++...+..-... ..-+.+.+.++|..+...|+.+-
T Consensus 43 ~~eq~~~mL~~W~~r~g~~at~~~L~~AL~~i~r~Di~~~ 82 (84)
T cd08317 43 LAQQAQAMLKLWLEREGKKATGNSLEKALKKIGRDDIVEK 82 (84)
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHcChHHHHHH
Confidence 457777766555553 24667889999999999988653
No 120
>PF10557 Cullin_Nedd8: Cullin protein neddylation domain; InterPro: IPR019559 This is the neddylation site of cullin proteins, which are a family of structurally related proteins containing an evolutionarily conserved cullin domain. With the exception of APC2, each member of the cullin family is modified by Nedd8 and several cullins function in Ubiquitin-dependent proteolysis, a process in which the 26S proteasome recognises and subsequently degrades a target protein tagged with K48-linked poly-ubiquitin chains. Cullins are molecular scaffolds responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Nedd8/Rub1 is a small ubiquitin-like protein, which was originally found to be conjugated to Cdc53, a cullin component of the SCF (Skp1-Cdc53/CUL1-F-box protein) E3 Ub ligase complex in Saccharomyces cerevisiae (Baker's yeast), and Nedd8 modification has now emerged as a regulatory pathway of fundamental importance for cell cycle control and for embryogenesis in metazoans. The only identified Nedd8 substrates are cullins. Neddylation results in covalent conjugation of a Nedd8 moiety onto a conserved cullin lysine residue []. ; GO: 0031625 ubiquitin protein ligase binding, 0006511 ubiquitin-dependent protein catabolic process, 0031461 cullin-RING ubiquitin ligase complex; PDB: 3RTR_G 3TDU_D 1LDJ_A 3TDZ_D 1LDK_B 1U6G_A 3O6B_J 3O2P_E 4A0K_A 2HYE_C ....
Probab=20.81 E-value=2.1e+02 Score=18.01 Aligned_cols=31 Identities=10% Similarity=0.209 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhh-cCCCChhhHHHHHHHHHHH
Q 026322 74 RILLETIFQKIA-QFKVKPDRFSVIKEMVTKE 104 (240)
Q Consensus 74 ~~ll~~i~~~l~-~~~~~~~~F~~~k~~l~~~ 104 (240)
..++..+.+.+. .|.++...|...-+.|+..
T Consensus 26 ~~L~~~v~~~l~~~f~~~~~~ik~~Ie~LIek 57 (68)
T PF10557_consen 26 DELINEVIEELKKRFPPSVSDIKKRIESLIEK 57 (68)
T ss_dssp HHHHHHHHHHTTTTS---HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHh
Confidence 467777777777 6677777777666666543
No 121
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=20.81 E-value=1.9e+02 Score=19.22 Aligned_cols=23 Identities=4% Similarity=0.018 Sum_probs=12.3
Q ss_pred HHHHHHHHhcc-CCCCChhHHHhh
Q 026322 116 LAMYYCSLILQ-DQTWPWMEELEV 138 (240)
Q Consensus 116 ~a~~~~~~ll~-~~~~~~~e~l~~ 138 (240)
++-+++..++. +.+|+.+++.++
T Consensus 5 HgHeVL~mmi~~~~~~t~~~L~~a 28 (78)
T PF10678_consen 5 HGHEVLNMMIESGNPYTKEELKAA 28 (78)
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHH
Confidence 45566655554 345555555443
No 122
>PF09568 RE_MjaI: MjaI restriction endonuclease; InterPro: IPR019068 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the MjaI (recognises CTAG but cleavage site unknown) restriction endonuclease. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=20.79 E-value=73 Score=24.56 Aligned_cols=46 Identities=15% Similarity=0.262 Sum_probs=30.6
Q ss_pred hhHHHhhCCCCCHHHHHHHHHHHhhcceeeEEeecCCChHHHHHHHHHHHHhh
Q 026322 132 WMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVF 184 (240)
Q Consensus 132 ~~e~l~~l~~it~edl~~f~~~~l~~~~~~~lv~GNi~~~~A~~l~~~~~~~l 184 (240)
..++.+++++||.||+++|++.+.=..-..++ +.+ ..+++.+.+.+
T Consensus 60 i~e~~~a~~~it~ed~~~wv~dLvi~kTf~G~----~~q---~~I~~~la~~~ 105 (170)
T PF09568_consen 60 ITEVKEALNKITEEDCINWVKDLVINKTFDGL----MTQ---EAILKKLAEEL 105 (170)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHheeecccchH----HHH---HHHHHHHHhhc
Confidence 46778899999999999999987643333333 333 33455555544
No 123
>PRK14433 acylphosphatase; Provisional
Probab=20.76 E-value=1.9e+02 Score=19.38 Aligned_cols=37 Identities=27% Similarity=0.229 Sum_probs=26.5
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i~ 81 (240)
.|..-||+=-+....+| +++.+.|=.+.+..++..+-
T Consensus 23 ~A~~~~l~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 60 (87)
T PRK14433 23 KARELGLSGYAENLSDGRVEVVAEGPKEALERLLHWLR 60 (87)
T ss_pred HHHHcCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHh
Confidence 34455665556666778 99999998888777666663
No 124
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=20.66 E-value=69 Score=21.22 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=13.8
Q ss_pred eecCCChHHHHHHHHH
Q 026322 164 IAGNIESNEAGSIIQY 179 (240)
Q Consensus 164 v~GNi~~~~A~~l~~~ 179 (240)
.+|+|++++|.+++..
T Consensus 3 ~~g~i~r~~Ae~~L~~ 18 (94)
T cd00173 3 YHGPISREEAEELLKK 18 (94)
T ss_pred cccCCCHHHHHHHHhc
Confidence 5899999999988765
No 125
>PRK14135 recX recombination regulator RecX; Provisional
Probab=20.41 E-value=3.7e+02 Score=21.98 Aligned_cols=50 Identities=8% Similarity=0.127 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCCChhHHHhhCCCC
Q 026322 92 DRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHL 142 (240)
Q Consensus 92 ~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~e~l~~l~~i 142 (240)
+..+.++..+.+.++.+....|+. -..-+...|....|+.+....+|...
T Consensus 210 ~e~e~l~~~~~k~~~k~~~~~~~k-~k~K~~~~L~rrGF~~~~I~~~l~~~ 259 (263)
T PRK14135 210 EEQELLQKELEKAYRKYSKYDGYE-LKQKLKQALYRKGFSYDDIDSFLREY 259 (263)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 356666655555555543322433 33344445556668887776666544
No 126
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=20.38 E-value=2.2e+02 Score=23.69 Aligned_cols=51 Identities=16% Similarity=0.127 Sum_probs=31.4
Q ss_pred CCChhHHHhhCC---------CCCHHHHHHHHHHHhhcceeeEEeecCCChHHHHHHHHH
Q 026322 129 TWPWMEELEVLP---------HLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQY 179 (240)
Q Consensus 129 ~~~~~e~l~~l~---------~it~edl~~f~~~~l~~~~~~~lv~GNi~~~~A~~l~~~ 179 (240)
..+.+|..++++ .++.++++..++..-...++.+.+.|+|+.+.+.++.+.
T Consensus 188 v~t~eea~~A~~~gaD~I~ld~~~~e~l~~~v~~i~~~~~i~i~asGGIt~~ni~~~a~~ 247 (269)
T cd01568 188 VETLEEAEEALEAGADIIMLDNMSPEELKEAVKLLKGLPRVLLEASGGITLENIRAYAET 247 (269)
T ss_pred cCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhccCCCeEEEEECCCCHHHHHHHHHc
Confidence 345566555442 366677776655432223667888888888888776543
Done!