Query 026322
Match_columns 240
No_of_seqs 154 out of 1054
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 10:47:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026322.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026322hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cww_A Insulysin, insulin-degr 100.0 2.1E-26 7.1E-31 220.8 25.7 234 1-238 537-770 (990)
2 1q2l_A Protease III; hydrolase 100.0 5.3E-26 1.8E-30 216.8 27.3 224 2-238 519-744 (939)
3 3gwb_A Peptidase M16 inactive 99.7 1.7E-16 6E-21 138.4 20.2 182 4-187 33-224 (434)
4 3cx5_A Cytochrome B-C1 complex 99.7 3.8E-16 1.3E-20 136.0 18.7 173 4-179 20-199 (431)
5 3amj_B Zinc peptidase inactive 99.7 3.6E-16 1.2E-20 136.1 16.4 181 4-185 23-215 (424)
6 1pp9_B Ubiquinol-cytochrome C 99.7 2.3E-15 7.8E-20 131.5 17.6 177 4-182 42-225 (439)
7 3d3y_A Uncharacterized protein 99.7 5.3E-15 1.8E-19 128.4 19.8 176 4-185 22-224 (425)
8 1hr6_A Alpha-MPP, mitochondria 99.7 1.3E-14 4.5E-19 128.5 20.4 180 4-185 24-211 (475)
9 3eoq_A Putative zinc protease; 99.5 4.6E-13 1.6E-17 116.1 19.6 181 4-186 21-209 (406)
10 3hdi_A Processing protease; CA 99.5 2.7E-13 9.4E-18 117.9 16.9 181 4-186 21-209 (421)
11 3cx5_B Cytochrome B-C1 complex 99.5 2.1E-13 7.1E-18 115.9 13.5 179 3-185 9-194 (352)
12 3ami_A Zinc peptidase; alpha/b 99.5 2.8E-12 9.7E-17 112.4 19.0 184 3-186 25-216 (445)
13 1pp9_A Ubiquinol-cytochrome C 99.4 3.3E-12 1.1E-16 112.0 16.9 182 4-186 32-221 (446)
14 1hr6_B Beta-MPP, mitochondrial 99.4 4.6E-12 1.6E-16 110.8 15.0 181 5-186 27-215 (443)
15 2fge_A Atprep2;, zinc metallop 99.4 4.5E-12 1.5E-16 121.7 15.0 180 2-184 570-783 (995)
16 3go9_A Insulinase family prote 99.3 1.8E-11 6E-16 109.1 14.8 181 3-186 46-238 (492)
17 1q2l_A Protease III; hydrolase 99.1 1.3E-09 4.4E-14 103.9 15.8 182 4-186 40-234 (939)
18 3cww_A Insulysin, insulin-degr 98.9 8.8E-09 3E-13 98.7 14.2 183 3-186 53-251 (990)
19 3ih6_A Putative zinc protease; 98.8 3E-07 1E-11 71.4 15.2 158 4-167 22-193 (197)
20 3s5m_A Falcilysin; M16 metallo 98.6 1.3E-06 4.5E-11 84.9 16.9 171 10-185 114-326 (1193)
21 3amj_B Zinc peptidase inactive 98.4 4.8E-06 1.7E-10 71.8 14.3 162 5-169 241-415 (424)
22 2fge_A Atprep2;, zinc metallop 98.4 1.2E-06 4.1E-11 84.1 11.1 164 21-185 69-260 (995)
23 3hdi_A Processing protease; CA 98.4 1.8E-05 6.2E-10 68.2 16.3 162 4-169 232-405 (421)
24 3gwb_A Peptidase M16 inactive 98.3 5.2E-06 1.8E-10 71.8 12.2 161 6-169 249-422 (434)
25 1hr6_A Alpha-MPP, mitochondria 98.3 3.8E-05 1.3E-09 67.5 17.8 162 4-168 241-437 (475)
26 3eoq_A Putative zinc protease; 98.3 1.4E-05 4.7E-10 68.8 14.6 161 5-169 234-405 (406)
27 1pp9_B Ubiquinol-cytochrome C 98.3 3.2E-05 1.1E-09 66.9 16.7 160 5-168 251-430 (439)
28 3cx5_A Cytochrome B-C1 complex 98.3 1.9E-05 6.5E-10 68.1 14.9 158 5-169 231-414 (431)
29 3d3y_A Uncharacterized protein 98.3 1.9E-05 6.6E-10 67.9 14.9 159 5-167 253-421 (425)
30 1hr6_B Beta-MPP, mitochondrial 98.2 3.8E-05 1.3E-09 66.6 15.5 163 4-169 244-429 (443)
31 3ami_A Zinc peptidase; alpha/b 98.2 4.2E-05 1.4E-09 66.5 15.7 162 6-168 244-422 (445)
32 1pp9_A Ubiquinol-cytochrome C 98.2 6.3E-05 2.1E-09 65.4 16.1 107 62-169 320-429 (446)
33 3go9_A Insulinase family prote 97.8 0.0018 6.1E-08 57.3 18.7 180 5-184 265-465 (492)
34 3s5m_A Falcilysin; M16 metallo 97.8 6E-05 2.1E-09 73.4 8.5 173 5-180 738-950 (1193)
35 3cx5_B Cytochrome B-C1 complex 69.8 6.8 0.00023 32.0 5.4 111 24-169 233-344 (352)
36 1vq8_E 50S ribosomal protein L 52.6 31 0.0011 25.8 5.6 53 20-72 55-114 (178)
37 3p04_A Uncharacterized BCR; SE 46.1 49 0.0017 21.5 5.1 48 139-187 10-57 (87)
38 2dbn_A Hypothetical protein YB 41.1 89 0.0031 27.0 7.4 86 91-187 55-153 (461)
39 1rl6_A Protein (ribosomal prot 40.8 82 0.0028 23.4 6.4 52 20-72 56-111 (177)
40 2r9i_A Putative phage capsid p 37.1 25 0.00084 24.0 2.6 45 141-185 3-48 (141)
41 3gnn_A Nicotinate-nucleotide p 35.4 34 0.0012 27.8 3.8 39 139-179 235-273 (298)
42 3j21_F 50S ribosomal protein L 34.0 86 0.0029 23.4 5.6 54 19-72 59-119 (184)
43 1zav_U 50S ribosomal protein L 33.3 17 0.00056 18.6 1.0 23 132-154 3-25 (30)
44 1dd4_C 50S ribosomal protein L 30.2 38 0.0013 18.5 2.3 29 132-160 3-31 (40)
45 1nkw_E 50S ribosomal protein L 29.4 1.1E+02 0.0039 23.4 5.6 52 20-72 84-139 (212)
46 2fhm_A Probable acylphosphatas 26.2 84 0.0029 20.3 3.9 37 45-81 24-61 (91)
47 2yu0_A Interferon-activable pr 26.1 67 0.0023 21.2 3.3 52 133-187 8-59 (94)
48 1ulr_A Putative acylphosphatas 25.2 84 0.0029 20.1 3.7 37 45-81 24-61 (88)
49 3l0g_A Nicotinate-nucleotide p 24.3 51 0.0018 26.8 3.0 39 139-179 233-271 (300)
50 2bjd_A Acylphosphatase; hypert 22.2 1E+02 0.0035 20.4 3.8 36 45-80 36-72 (101)
51 2dk8_A DNA-directed RNA polyme 22.2 1.4E+02 0.0048 19.0 4.2 47 121-167 19-67 (81)
52 1jyr_A Growth factor receptor- 21.6 47 0.0016 21.6 1.9 16 164-179 6-21 (96)
53 2vh7_A Acylphosphatase-1; hydr 21.3 1.1E+02 0.0038 20.1 3.8 37 45-81 30-67 (99)
54 2l6a_A Nacht, LRR and PYD doma 21.1 98 0.0033 20.6 3.5 55 131-185 11-67 (102)
55 1use_A VAsp, vasodilator-stimu 21.1 1E+02 0.0035 17.2 2.9 21 89-109 4-24 (45)
56 3o65_A Putative ataxin-3-like 21.1 54 0.0019 24.7 2.4 58 117-174 16-82 (191)
57 1i3z_A EWS/FLI1 activated tran 21.0 52 0.0018 21.5 2.1 16 164-179 6-21 (103)
58 1nrv_A Growth factor receptor- 20.9 52 0.0018 21.7 2.1 16 164-179 8-23 (105)
59 1urr_A CG18505 protein; acylph 20.9 1.1E+02 0.0037 20.2 3.7 37 45-81 33-70 (102)
60 1qpo_A Quinolinate acid phosph 20.7 90 0.0031 25.1 3.8 39 141-179 222-261 (284)
61 1w2i_A Acylphosphatase; hydrol 20.2 89 0.003 20.2 3.1 36 45-80 26-62 (91)
62 3paj_A Nicotinate-nucleotide p 20.1 98 0.0034 25.4 3.9 38 139-178 257-294 (320)
No 1
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.95 E-value=2.1e-26 Score=220.77 Aligned_cols=234 Identities=36% Similarity=0.558 Sum_probs=201.8
Q ss_pred CCCCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccEEEEeeeCceeEEEEeeccchHHHHHHHH
Q 026322 1 MFSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETI 80 (240)
Q Consensus 1 ~F~~Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~ll~~i 80 (240)
+|++|++.+++.+.+|....++++.+++.|++.++.+.+++..|.+.++|++++++.+.+|+.++++|++++++.+++.+
T Consensus 537 ~f~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~g~~~~l~~~l~ll 616 (990)
T 3cww_A 537 KFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKI 616 (990)
T ss_dssp SCCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEETTEEEEEEEEESTTHHHHHHHH
T ss_pred ccCCCcEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHhCCeEEEEEEcCCeEEEEEEeccHhHHHHHHHH
Confidence 38899999999999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCCChhHHHhhCCCCCHHHHHHHHHHHhhccee
Q 026322 81 FQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFL 160 (240)
Q Consensus 81 ~~~l~~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~e~l~~l~~it~edl~~f~~~~l~~~~~ 160 (240)
.+.+.++.+++++|+++|++++++++|...+.|+.+|...+..+++++.|..++.++.|+++|.+++.+|++.+++..++
T Consensus 617 ~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~~p~~~a~~~~~~~l~~~~~~~~~~~~~l~~lt~~~l~~~~~~~~~~~~~ 696 (990)
T 3cww_A 617 IEKMATFEIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALADVTLPRLKAFIPQLLSRLHI 696 (990)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHBSSCCCHHHHHHHHTTCCHHHHHHHHHHHHHEEEE
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHhCCCCCCHHHHHHHHhcCCHHHHHHHHHHHHhhheE
Confidence 99999999999999999999999999998856999999999999999899988899999999999999999999999999
Q ss_pred eEEeecCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcCccceeEeCCCCeEEEEeCCCCCCCCCeEEEEEEEeCc
Q 026322 161 ECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCLVHYIQVQE 238 (240)
Q Consensus 161 ~~lv~GNi~~~~A~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~Ns~v~~y~Q~g~ 238 (240)
+++|+||++.+++.++.+.+.+.+...+. +.|.++.+.+..+.+.+|.|..+++.. .++++.|+++..|+|.|.
T Consensus 697 ~~~v~Gn~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~ 770 (990)
T 3cww_A 697 EALLHGNITKQAALGIMQMVEDTLIEHAH--TKPLLPSQLAAYREVQLPDRGWFVYQQ--RNEVHNNSGIEIYYQTDM 770 (990)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHHHHHC--CEECCGGGCCCCCBBCCCTTEEEEEEE--ECSSCSSEEEEEEEEEEE
T ss_pred EEEEEcCCCHHHHHHHHHHHHHHHhccCC--CCCCchhhccccceEEcCCCCeEEEEe--cCCCCCCcEEEEEEeCCC
Confidence 99999999999999997776665532111 111211122233445667777655543 345688999999999873
No 2
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.95 E-value=5.3e-26 Score=216.82 Aligned_cols=224 Identities=17% Similarity=0.290 Sum_probs=194.9
Q ss_pred CCCc-eeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccEEEEeeeCceeEEEEeeccchHHHHHHHH
Q 026322 2 FSTP-KAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETI 80 (240)
Q Consensus 2 F~~P-k~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~ll~~i 80 (240)
|++| ++.|.+.+.+|....++++.+++.|+..++.+.+.+..|++.+||++++++. .+|+.++++|++++++.+++.+
T Consensus 519 f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~~g~~~~~~~~~l~G~~~~~~~-~~g~~~~~~g~~~~l~~~l~ll 597 (939)
T 1q2l_A 519 FASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQLSNQASVGGISFSTNA-NNGLMVNANGYTQRLPQLFQAL 597 (939)
T ss_dssp CTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-SSEEEEEEEEESSSHHHHHHHH
T ss_pred cCCCCcEEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHHHHHhhHHHHcCcEEEEee-CCcEEEEEEcccHhHHHHHHHH
Confidence 7776 9999999999999899999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCCChhHHHhhCCCCCHHHHHHHHHHHhhccee
Q 026322 81 FQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFL 160 (240)
Q Consensus 81 ~~~l~~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~e~l~~l~~it~edl~~f~~~~l~~~~~ 160 (240)
.+.+.+|.+++++|+++|++++++++|...+.|+.++...+..+++.+.|+..+.++.|+++|++|+.+|++++++..++
T Consensus 598 ~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~~~p~~~a~~~l~~~l~~~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~ 677 (939)
T 1q2l_A 598 LEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSRDERRKILPSITLKEVLAYRDALKSGARP 677 (939)
T ss_dssp HHHHHHCCCCSHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHTTSSSCCCHHHHHHHGGGCCHHHHHHHHHHHHTTCEE
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHhhhhhcChHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHhhheE
Confidence 99999999999999999999999999997766999999999999998889999999999999999999999999999999
Q ss_pred eEEeecCCChHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcCccceeEeCCCCeEEEEeCCCCCCCCCeEE-EEEEEeCc
Q 026322 161 ECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCL-VHYIQVQE 238 (240)
Q Consensus 161 ~~lv~GNi~~~~A~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~Ns~v-~~y~Q~g~ 238 (240)
+++|+||++.++|+++++.+...++.... .....+...++.|..+.+... .+ +.++++ .+|||+|.
T Consensus 678 ~~~vvGn~~~~~~~~l~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~ 744 (939)
T 1q2l_A 678 EFMVIGNMTEAQATTLARDVQKQLGADGS---------EWCRNKDVVVDKKQSVIFEKA--GN-STDSALAAVFVPTGY 744 (939)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHTCCCS---------CCCCCEEECCCSCEEEEEEEC--CS-SSCEEEEEEEECSSC
T ss_pred EEEEEcCCCHHHHHHHHHHHHHHHccCCc---------cccccceEEeCCCceEEEecC--CC-CCCceeEEEEEecCC
Confidence 99999999999999999988887763211 111222334455555444443 22 346666 88899873
No 3
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=99.74 E-value=1.7e-16 Score=138.41 Aligned_cols=182 Identities=13% Similarity=0.141 Sum_probs=156.3
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhh---hhccccc--ccEEEEeeeCceeEEEEeeccch--HHHH
Q 026322 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEY---AYYAQVA--GLDYGINHTESGFEVTVVGYNHK--LRIL 76 (240)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~e~---~y~a~~a--gl~~~~~~~~~gi~l~v~G~s~k--l~~l 76 (240)
.|++.+.+.+..+...+ +...+++.++..++....... .+...++ |.+++.+.+..++.+.++|++++ ++.+
T Consensus 33 ~~~~~~~~~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~~~~~l~~~l~~~g~~~~a~t~~~~~~~~~~~~~~~~~l~~~ 111 (434)
T 3gwb_A 33 LPMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGKDVGAIAQGFEGLGADFGNGAYKDMAVASLRSLSAVDKREPA 111 (434)
T ss_dssp SSEEEEEEEESCSGGGC-TTSTTHHHHHHHHGGGEETTEEHHHHHHHHHTTTCEEEEEECSSCEEEEEEEECSHHHHHHH
T ss_pred CCEEEEEEEEecccccC-CcchhHHHHHHHHHhcCcccCCHHHHHHHHHHhCCEEEeeecCCeEEEEEEecCccccHHHH
Confidence 59999999999998777 788899999999997755432 2333333 77888888889999999999999 9999
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccC-CCCC--hhHHHhhCCCCCHHHHHHHHHH
Q 026322 77 LETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD-QTWP--WMEELEVLPHLEAEDLAKFVPM 153 (240)
Q Consensus 77 l~~i~~~l~~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~-~~~~--~~e~l~~l~~it~edl~~f~~~ 153 (240)
++.+.+.+.++.+++++|++.|+.+.+++++...+ |...+...+..+++. +.|. .....+.++.+|.+++++|+++
T Consensus 112 l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~it~~~l~~f~~~ 190 (434)
T 3gwb_A 112 LKLFAEVVGKPTFPADSLARIKNQMLAGFEYQKQN-PGKLASLELMKRLYGTHPYAHASDGDAKSIPPITLAQLKAFHAK 190 (434)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTSTTSSCTTCCTTTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhCCHHHHHHHHHH
Confidence 99999999999999999999999999999998554 999999988888875 3443 3346789999999999999999
Q ss_pred HhhcceeeEEeecCCChHHHHHHHHHHHHhhcCC
Q 026322 154 MLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKG 187 (240)
Q Consensus 154 ~l~~~~~~~lv~GNi~~~~A~~l~~~~~~~l~~~ 187 (240)
++.+.++.++|+||++.+++.++++.....++..
T Consensus 191 ~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~l~~~ 224 (434)
T 3gwb_A 191 AYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKG 224 (434)
T ss_dssp HSCGGGEEEEEEESCCHHHHHHHHHHHHHHSCCC
T ss_pred hcCcCCeEEEEEcCCCHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999888877644
No 4
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=99.72 E-value=3.8e-16 Score=136.03 Aligned_cols=173 Identities=18% Similarity=0.147 Sum_probs=152.9
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccEEEEeeeCceeEEEEeeccchHHHHHHHHHHH
Q 026322 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQK 83 (240)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~ll~~i~~~ 83 (240)
.|++.+.+.+..|...+++...+++.++..++...... |.+...|.+++.+.+.+++.+.+++++++++.+++.+.+.
T Consensus 20 ~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~--~~~~~~G~~~na~t~~~~t~~~~~~~~~~l~~~l~ll~~~ 97 (431)
T 3cx5_A 20 AHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENS--AVAAKEGLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQS 97 (431)
T ss_dssp CSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHH--HHHHHTTCEEEEEECSSCEEEEEEECSTTHHHHHHHHHHH
T ss_pred CCEEEEEEEEecCccCCCCCCcchHHHHHHHHhcCCCc--ccHHHcCCeeeeeecCCeEEEEEEechhhHHHHHHHHHHH
Confidence 48999999999998888888999999999999776543 5678889999999999999999999999999999999999
Q ss_pred hhcCC---CChhhHHHHHHHHHHHHhhhcccCh-HHHHHHHHHHhccCC-C--CChhHHHhhCCCCCHHHHHHHHHHHhh
Q 026322 84 IAQFK---VKPDRFSVIKEMVTKEYHNNKFLQP-FQLAMYYCSLILQDQ-T--WPWMEELEVLPHLEAEDLAKFVPMMLS 156 (240)
Q Consensus 84 l~~~~---~~~~~F~~~k~~l~~~~~n~~~~~p-~~~a~~~~~~ll~~~-~--~~~~e~l~~l~~it~edl~~f~~~~l~ 156 (240)
+.++. +++++|++.|+.+.+++++...+ | ...+...+...++.+ + ++.....+.|+.+|.+++++|+++++.
T Consensus 98 ~~~p~~~~f~~~~~~~ek~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~ 176 (431)
T 3cx5_A 98 FIQQKANLLSSSNFEATKKSVLKQVQDFEDN-DHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANNHFL 176 (431)
T ss_dssp HHTCSTTTTCHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHTTTSGGGSCTTCCHHHHHTCCHHHHHHHHHHHSC
T ss_pred HhCcccccCCHHHHHHHHHHHHHHHHhhhcC-chhHHHHHHHHHHhcCCCCCCCCCCCCHHHHhhCCHHHHHHHHHhcCC
Confidence 99999 99999999999999999986665 9 999999888888753 2 344556778889999999999999999
Q ss_pred cceeeEEeecCCChHHHHHHHHH
Q 026322 157 RTFLECYIAGNIESNEAGSIIQY 179 (240)
Q Consensus 157 ~~~~~~lv~GNi~~~~A~~l~~~ 179 (240)
+.++.+.|+||++.+++.++++.
T Consensus 177 ~~~~~l~v~G~~~~~~~~~~~~~ 199 (431)
T 3cx5_A 177 NSNAVVVGTGNIKHEDLVNSIES 199 (431)
T ss_dssp GGGEEEEEEESCCHHHHHHHHTT
T ss_pred CCcEEEEEEcCCCHHHHHHHHHH
Confidence 99999999999999988887754
No 5
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=99.70 E-value=3.6e-16 Score=136.08 Aligned_cols=181 Identities=13% Similarity=0.108 Sum_probs=152.2
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-------hhhhhhccccc--ccEEEEeeeCceeEEEEeeccchH-
Q 026322 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDY-------LNEYAYYAQVA--GLDYGINHTESGFEVTVVGYNHKL- 73 (240)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~-------l~e~~y~a~~a--gl~~~~~~~~~gi~l~v~G~s~kl- 73 (240)
.|++.+.+.+..+...+++...+++.++..++... ++...+...++ |.+++...+.+++.+.++++++++
T Consensus 23 ~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~~~~~~~~~l~~~G~~~~a~t~~~~t~~~~~~~~~~~~ 102 (424)
T 3amj_B 23 LPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDENAIADRLADIGARLGGGAEADRASFSLRVLSSPAE 102 (424)
T ss_dssp SSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCEEHHHHHHHHHHTTCEEEEEECSSCEEEEEEEESSHHH
T ss_pred CCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccCCCccCCCHHHHHHHHHHhCCEEEeecCCCeEEEEEEEeccccC
Confidence 58999999999998888888899999999999763 33333444444 667888888889999999999998
Q ss_pred -HHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccC-CCCChhHHHhhCCCCCHHHHHHHH
Q 026322 74 -RILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD-QTWPWMEELEVLPHLEAEDLAKFV 151 (240)
Q Consensus 74 -~~ll~~i~~~l~~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~-~~~~~~e~l~~l~~it~edl~~f~ 151 (240)
+.+++.+.+.+.++.+++++|++.|+.+.+++++...+ |...+...+..++++ ++|......+.|+.+|.+++++|+
T Consensus 103 l~~~l~ll~~~~~~p~f~~~~~~~e~~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~p~~~~~~~~~l~~it~~~l~~f~ 181 (424)
T 3amj_B 103 RNSALTILRDILAHPTFPAPVLERERARAIAGLREAQTQ-PGSILGRRFTELAYGKHPYGHVSSVATLQKISRDQLVSFH 181 (424)
T ss_dssp HHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHTTSGGGCCCCHHHHHHCCHHHHHHHH
T ss_pred hhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHhcCCCCCCCCCCCHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999987654 999999988888875 333322145667789999999999
Q ss_pred HHHhhcceeeEEeecCCChHHHHHHHHHHHHhhc
Q 026322 152 PMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFF 185 (240)
Q Consensus 152 ~~~l~~~~~~~lv~GNi~~~~A~~l~~~~~~~l~ 185 (240)
++++.+.++.+.|+||++.+++.++++.....++
T Consensus 182 ~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~f~~~~ 215 (424)
T 3amj_B 182 RTHYVARTAVVTLVGDITRAEAETIAQQLTADLP 215 (424)
T ss_dssp HHHSCTTSCEEEEEESCCHHHHHHHHHHTTTTSC
T ss_pred HHhcCCCceEEEEEeCCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999998877655554
No 6
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=99.67 E-value=2.3e-15 Score=131.52 Aligned_cols=177 Identities=7% Similarity=0.017 Sum_probs=153.2
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhhcccccccEEEEeeeCceeEEEEeeccchHHHHHH
Q 026322 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN-----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLE 78 (240)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~-----e~~y~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~ll~ 78 (240)
.|++.+.+.+..|...+++...+++.++..++..... +........|.+++.+.+..++.++++|++++++.+++
T Consensus 42 ~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~~~~~~~~~l~~~G~~~na~t~~~~t~~~~~~~~~~l~~~l~ 121 (439)
T 1pp9_B 42 APASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILME 121 (439)
T ss_dssp CSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCHHHHHHHHHHTTCEEEEEECSSCEEEEEEEEGGGHHHHHH
T ss_pred CceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcCCHHHHHHHHHHhCCeEEEEecceEEEEEEEeehhhHHHHHH
Confidence 5899999999999888888889999999998865432 34444555688999998899999999999999999999
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCC--CChhHHHhhCCCCCHHHHHHHHHHHhh
Q 026322 79 TIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQT--WPWMEELEVLPHLEAEDLAKFVPMMLS 156 (240)
Q Consensus 79 ~i~~~l~~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~~--~~~~e~l~~l~~it~edl~~f~~~~l~ 156 (240)
.+.+.+.++.+++++|++.|+.+.+++++...+ |..++...+...++.+. ++.....+.|+.+|.+++++|+++++.
T Consensus 122 ll~~~~~~p~f~~~~~~~~k~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~it~~~l~~f~~~~y~ 200 (439)
T 1pp9_B 122 FLLNVTTAPEFRRWEVAALQPQLRIDKAVALQN-PQAHVIENLHAAAYRNALANSLYCPDYRIGKVTPVELHDYVQNHFT 200 (439)
T ss_dssp HHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHBSSGGGSCSSCCGGGTTTCCHHHHHHHHHHHCS
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHhcCCCCCCccCCHHHHhhcCHHHHHHHHHHhCC
Confidence 999999999999999999999999999986555 99999998888887632 334466789999999999999999999
Q ss_pred cceeeEEeecCCChHHHHHHHHHHHH
Q 026322 157 RTFLECYIAGNIESNEAGSIIQYIED 182 (240)
Q Consensus 157 ~~~~~~lv~GNi~~~~A~~l~~~~~~ 182 (240)
+.++.++|+|| +.+++.++++.+..
T Consensus 201 ~~~~~l~v~G~-~~~~~~~~~~~~~~ 225 (439)
T 1pp9_B 201 SARMALIGLGV-SHPVLKQVAEQFLN 225 (439)
T ss_dssp GGGEEEEEESS-CHHHHHHHHHHHCC
T ss_pred CCceEEEEeCC-CHHHHHHHHHHHhC
Confidence 99999999999 99999998877655
No 7
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=99.67 E-value=5.3e-15 Score=128.43 Aligned_cols=176 Identities=15% Similarity=0.166 Sum_probs=145.2
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhh----hhccccc---ccEEEEeeeCce----eEEEEeeccc-
Q 026322 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEY----AYYAQVA---GLDYGINHTESG----FEVTVVGYNH- 71 (240)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~e~----~y~a~~a---gl~~~~~~~~~g----i~l~v~G~s~- 71 (240)
.|++.+.+.+..|...++ .+++.++..++.....+. .+...++ |.+++.+.+.++ +.++++++++
T Consensus 22 ~~~~~~~~~~~~g~~~e~---~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~~t~~~~~~~~~~~~~~ 98 (425)
T 3d3y_A 22 YKTVRLLVRFNTRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKKGNQHWFNISMNIVNDH 98 (425)
T ss_dssp CSEEEEEEEEEEECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEEEETTEEEEEEEEEEECGG
T ss_pred cceEEEEEEEeCCCCccc---hhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeeeecCceEEEEEEEEecChh
Confidence 489999999998875544 478999999998766543 3555555 777777665554 8999999998
Q ss_pred ------hHHHHHHHHHHHhhcCC-----CChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhcc-C-CCCC--hhHHH
Q 026322 72 ------KLRILLETIFQKIAQFK-----VKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQ-D-QTWP--WMEEL 136 (240)
Q Consensus 72 ------kl~~ll~~i~~~l~~~~-----~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~-~-~~~~--~~e~l 136 (240)
+++.+++.+.+.+.++. +++++|++.|+.+.+++++...+ |...+...+...++ . +++. .....
T Consensus 99 ~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~g~~ 177 (425)
T 3d3y_A 99 YLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVED-KQTYASLALQSVYFNQSEDQKIPSFGTV 177 (425)
T ss_dssp GCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHTTTCTTTTSCTTCCH
T ss_pred hccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHhccCCCCccCCCCCCH
Confidence 69999999999999999 99999999999999999986655 99999998888887 4 4343 44567
Q ss_pred hhCCCCCHHHHHHHHHHHhhcceeeEEeecCCChHHHHHHHHHHHHhhc
Q 026322 137 EVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFF 185 (240)
Q Consensus 137 ~~l~~it~edl~~f~~~~l~~~~~~~lv~GNi~~~~A~~l~~~~~~~l~ 185 (240)
+.|+.+|.+++++|+++++.+.++.+.|+||++.+++.+++ .... ++
T Consensus 178 ~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~-~~~~-~~ 224 (425)
T 3d3y_A 178 AALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF-KQLP-FT 224 (425)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH-HTSC-CC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH-HhCC-CC
Confidence 77788999999999999999999999999999999999888 5544 44
No 8
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=99.65 E-value=1.3e-14 Score=128.47 Aligned_cols=180 Identities=11% Similarity=0.074 Sum_probs=156.2
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhh-----hhhhhcccccccEEEEeeeCceeEEEEeeccchHHHHHH
Q 026322 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYL-----NEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLE 78 (240)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l-----~e~~y~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~ll~ 78 (240)
.|++.+.+.+..+...+++...+++.++..++.... .+.....+..|.+++.+.+.+++.+.+++++++++.+++
T Consensus 24 ~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t~~d~t~y~~~~~~~~l~~~l~ 103 (475)
T 1hr6_A 24 GHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQ 103 (475)
T ss_dssp CSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEECSSCEEEEEEECGGGHHHHHH
T ss_pred CCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEEccCeEEEEEEecHHHHHHHHH
Confidence 488999999999988888889999999998886543 345555666788899998889999999999999999999
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCC-C--CChhHHHhhCCCCCHHHHHHHHHHHh
Q 026322 79 TIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-T--WPWMEELEVLPHLEAEDLAKFVPMML 155 (240)
Q Consensus 79 ~i~~~l~~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~-~--~~~~e~l~~l~~it~edl~~f~~~~l 155 (240)
.+.+.+.++.+++++|++.|+.+++++++...+ |...+.+.+..+++.+ . ++.....+.|+.+|.+++++|+++++
T Consensus 104 ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~it~~~l~~f~~~~y 182 (475)
T 1hr6_A 104 LMSETVRFPKITEQELQEQKLSAEYEIDEVWMK-PELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKFY 182 (475)
T ss_dssp HHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTTSGGGSCSSCCGGGGGGCCHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhcCHHHHHHHHHHhC
Confidence 999999999999999999999999999986555 9999999998888863 2 33345678889999999999999999
Q ss_pred hcceeeEEeecCCChHHHHHHHHHHHHhhc
Q 026322 156 SRTFLECYIAGNIESNEAGSIIQYIEDVFF 185 (240)
Q Consensus 156 ~~~~~~~lv~GNi~~~~A~~l~~~~~~~l~ 185 (240)
.+.++.+.|+| ++.+++.++++.....++
T Consensus 183 ~p~n~~l~v~G-~d~~~~~~~i~~~f~~~~ 211 (475)
T 1hr6_A 183 TPENTVAAFVG-VPHEKALELTGKYLGDWQ 211 (475)
T ss_dssp CGGGEEEEEES-SCHHHHHHHHHHHHTTCC
T ss_pred CcccEEEEEeC-CCHHHHHHHHHHHhccCC
Confidence 99999999999 999999999887766554
No 9
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=99.55 E-value=4.6e-13 Score=116.07 Aligned_cols=181 Identities=9% Similarity=0.050 Sum_probs=152.3
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhhcccccccEEEEeeeCceeEEEEeeccchHHHHHH
Q 026322 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN-----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLE 78 (240)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~-----e~~y~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~ll~ 78 (240)
.|.+.+.+.+..+...+++...+++.++..++-.... +.....+..|-+++...+.+...+.+++.+++++..++
T Consensus 21 ~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~~~~~~~l~~~G~~~na~t~~d~t~y~~~~~~~~l~~~l~ 100 (406)
T 3eoq_A 21 ARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALAVNRAFDRMGAQYNAFTSEEATVYYGAVLPEFAYDLLG 100 (406)
T ss_dssp CSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHHHHHHHHHTTCEEEEEECSSCEEEEEEECGGGHHHHHH
T ss_pred CCeEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccceecCCeEEEEEEecHHHHHHHHH
Confidence 5889999999999888888999999999999865433 22222233477888888888999999999999999999
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccC-CCCC--hhHHHhhCCCCCHHHHHHHHHHHh
Q 026322 79 TIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD-QTWP--WMEELEVLPHLEAEDLAKFVPMML 155 (240)
Q Consensus 79 ~i~~~l~~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~-~~~~--~~e~l~~l~~it~edl~~f~~~~l 155 (240)
.+.+.+ +|.+++++|++.|..+..+++....+ |...+...+...+++ ++|. .....+.++.+|.+|+++|+++++
T Consensus 101 ll~d~~-~p~f~~~~~~~ek~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~~~t~~~l~~f~~~~y 178 (406)
T 3eoq_A 101 LFAKLL-RPALREEDFQTEKLVILEEIARYQDR-PGFMAYEWARARFFQGHPLGNSVLGTRESITALTREGMAAYHRRRY 178 (406)
T ss_dssp HHHHHT-SCCCCHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHTTCGGGCCSSCCHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHh-cCCCCHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhCCHHHHHHHHHHhC
Confidence 999999 99999999999999999999987655 999999988888876 3332 334566778889999999999999
Q ss_pred hcceeeEEeecCCChHHHHHHHHHHHHhhcC
Q 026322 156 SRTFLECYIAGNIESNEAGSIIQYIEDVFFK 186 (240)
Q Consensus 156 ~~~~~~~lv~GNi~~~~A~~l~~~~~~~l~~ 186 (240)
.+.++.+.|+||++.+++.++++.....++.
T Consensus 179 ~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~ 209 (406)
T 3eoq_A 179 LPKNMVLAATGRVDFDRLLAEAERLTEAWPE 209 (406)
T ss_dssp CGGGEEEEEEESCCHHHHHHHHHHHHTTCCC
T ss_pred CccCEEEEEEcCCCHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999998887665653
No 10
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=99.53 E-value=2.7e-13 Score=117.87 Aligned_cols=181 Identities=11% Similarity=0.095 Sum_probs=150.8
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh-----hhhcccccccEEEEeeeCceeEEEEeeccchHHHHHH
Q 026322 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNE-----YAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLE 78 (240)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~e-----~~y~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~ll~ 78 (240)
.|.+.+.+.+..+...+++...+++.++..++...... ..-.....|-+++.+.+.+...+.+++.+++++.+++
T Consensus 21 ~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~~~~~~~l~~~G~~~na~t~~d~t~~~~~~~~~~l~~~l~ 100 (421)
T 3hdi_A 21 VRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSIGGQVNAFTSKEYTCYYAKVLDDHAGQAID 100 (421)
T ss_dssp CSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBHHHHHHHHHTTTSCEEEEECSSCEEEEEEEEGGGHHHHHH
T ss_pred CCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCceeeeeccceEEEEEEecHHHHHHHHH
Confidence 58899999999998888888999999999988654332 2222233466778887788899999999999999999
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCC-CC--ChhHHHhhCCCCCHHHHHHHHHHHh
Q 026322 79 TIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TW--PWMEELEVLPHLEAEDLAKFVPMML 155 (240)
Q Consensus 79 ~i~~~l~~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~-~~--~~~e~l~~l~~it~edl~~f~~~~l 155 (240)
.+.+.+.++.+++++|++.|+.+..+++....+ |...+...+...++.+ ++ +.-...+.++.+|.+++++|+++++
T Consensus 101 ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~it~~~l~~f~~~~y 179 (421)
T 3hdi_A 101 TLSDMFFHSTFQKEELEKERKVVFEEIKMVDDT-PDDIVHDLLSSATYGKHSLGYPILGTVETLNSFNEGMLRHYMDRFY 179 (421)
T ss_dssp HHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHTTSGGGSCTTCCHHHHHHCCHHHHHHHHHHHS
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhCC-HHHHHHHHHHHHhcCCCCCCCCCcCCHHHHHhCCHHHHHHHHHHhc
Confidence 999999999999999999999999999987665 9999999888888763 33 2233567778899999999999999
Q ss_pred hcceeeEEeecCCChHHHHHHHHHHHHhhcC
Q 026322 156 SRTFLECYIAGNIESNEAGSIIQYIEDVFFK 186 (240)
Q Consensus 156 ~~~~~~~lv~GNi~~~~A~~l~~~~~~~l~~ 186 (240)
.+.++.+.|+||++ +++.++++.....++.
T Consensus 180 ~p~n~~l~v~Gd~~-~~~~~~v~~~f~~~~~ 209 (421)
T 3hdi_A 180 TGDYVVISVAGNVH-DELIDKIKETFSQVKP 209 (421)
T ss_dssp STTTEEEEEEESCC-HHHHHHHHHHTTSSCC
T ss_pred CcccEEEEEEeCCC-HHHHHHHHHHhcCCCC
Confidence 99999999999999 9999888877665543
No 11
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=99.51 E-value=2.1e-13 Score=115.90 Aligned_cols=179 Identities=8% Similarity=0.084 Sum_probs=146.9
Q ss_pred CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhhcccccccEEEEeeeCceeEEEEeeccchHHHHH
Q 026322 3 STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN-----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILL 77 (240)
Q Consensus 3 ~~Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~-----e~~y~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~ll 77 (240)
..|.+.+.+.+..+...++ ..+++.++..++..... +........|.+++.+.+.+++.+.+++.+++++.++
T Consensus 9 ~~~~v~~~~~~~~Gs~~e~--~~G~ah~leh~lf~Gt~~~~~~~l~~~l~~~G~~~na~t~~~~t~~~~~~~~~~l~~~l 86 (352)
T 3cx5_B 9 PTKISTLAVKVHGGSRYAT--KDGVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLDREYITLKATFLKDDLPYYV 86 (352)
T ss_dssp SCSEEEEEEEESCSGGGCS--STTHHHHHHHHTTSCBSSSCHHHHHHHHHHHTCEEEEEECSSCEEEEEEEEGGGHHHHH
T ss_pred CCceEEEEEEEeeeccCCC--cccHHHHHHHHhccCcCCCCHHHHHHHHHHhCCeEEEEEccceEEEEEEechhhHHHHH
Confidence 3688899999988766543 56888888888854332 2333334557788888888899999999999999999
Q ss_pred HHHHHHhhcCCCChhhHH-HHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCCChhHHHhhCCCCCHHHHHHHHHHHhh
Q 026322 78 ETIFQKIAQFKVKPDRFS-VIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLS 156 (240)
Q Consensus 78 ~~i~~~l~~~~~~~~~F~-~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~e~l~~l~~it~edl~~f~~~~l~ 156 (240)
+.+.+.+.++.+++++|+ +.|+.+..++++...+ |..++...+...++.+++...-..+.++.+|.+++++|+++++.
T Consensus 87 ~ll~d~~~~p~f~~~~~~~~~k~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~p~~~~~~~~~l~~it~~~l~~f~~~~y~ 165 (352)
T 3cx5_B 87 NALADVLYKTAFKPHELTESVLPAARYDYAVAEQC-PVKSAEDQLYAITFRKGLGNPLLYDGVERVSLQDIKDFADKVYT 165 (352)
T ss_dssp HHHHHHHHHBCCCHHHHHHTHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHTTTTTSCSSCCSSSCCCHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCCCCccchhhhccCCHHHHHHHHHHhCC
Confidence 999999999999999998 9999999999976555 99999998888887655543334789999999999999999999
Q ss_pred cceeeEEeecCCChHHHHHHH-HHHHHhhc
Q 026322 157 RTFLECYIAGNIESNEAGSII-QYIEDVFF 185 (240)
Q Consensus 157 ~~~~~~lv~GNi~~~~A~~l~-~~~~~~l~ 185 (240)
+.++.+.++| ++.+++.+++ +.....++
T Consensus 166 ~~n~~l~v~G-~~~~~~~~~i~~~~f~~~~ 194 (352)
T 3cx5_B 166 KENLEVSGEN-VVEADLKRFVDESLLSTLP 194 (352)
T ss_dssp GGGEEEEEES-SCHHHHHHHHHHSTTTTSC
T ss_pred cCcEEEEEeC-CCHHHHHHHHHHHhhccCC
Confidence 9999999999 9999999887 56544444
No 12
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=99.48 E-value=2.8e-12 Score=112.36 Aligned_cols=184 Identities=8% Similarity=0.065 Sum_probs=147.8
Q ss_pred CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhhcccccccEEEEeeeCceeEEEEeeccchHHHHH
Q 026322 3 STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN-----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILL 77 (240)
Q Consensus 3 ~~Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~-----e~~y~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~ll 77 (240)
..|.+.+.+.+..+...+++...+++.++..++-.... +..-.....|.+++...+.....+.+++.+++++.++
T Consensus 25 ~~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~~~l~~~l~~~g~~~na~t~~d~t~y~~~~~~~~l~~~l 104 (445)
T 3ami_A 25 RAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVM 104 (445)
T ss_dssp TSSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCTTHHHHHHHHTTCEEEEEECSSCEEEEEEEEGGGHHHHH
T ss_pred CCCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCccccccCCCeEEEEEECCHHHHHHHH
Confidence 46899999999988877777788999999888754432 2221222235577777777888888889999999999
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccC-CCCC--hhHHHhhCCCCCHHHHHHHHHHH
Q 026322 78 ETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD-QTWP--WMEELEVLPHLEAEDLAKFVPMM 154 (240)
Q Consensus 78 ~~i~~~l~~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~-~~~~--~~e~l~~l~~it~edl~~f~~~~ 154 (240)
+.+.+.+.+|.++++.|++.|..+..+++....+.|...+...+...+++ +++. .....+.|+.+|.+++++|++++
T Consensus 105 ~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~l~~it~~~l~~f~~~~ 184 (445)
T 3ami_A 105 GLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGWMNDIQNMTAQDVRDWYKRW 184 (445)
T ss_dssp HHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTCCHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCCCHHHHhhCCHHHHHHHHHHh
Confidence 99999999999999999999999999999433444998988888888875 3332 22346677789999999999999
Q ss_pred hhcceeeEEeecCCChHHHHHHHHHHHHhhcC
Q 026322 155 LSRTFLECYIAGNIESNEAGSIIQYIEDVFFK 186 (240)
Q Consensus 155 l~~~~~~~lv~GNi~~~~A~~l~~~~~~~l~~ 186 (240)
+.+.++.+.|+||++.+++.++++.....++.
T Consensus 185 y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~~ 216 (445)
T 3ami_A 185 YGPNNATVVVVGDVEHEAVFRLAEQTYGKLAR 216 (445)
T ss_dssp CSGGGEEEEEEESCCHHHHHHHHHHTGGGSCC
T ss_pred CCccceEEEEEcCCCHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999998876665543
No 13
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=99.44 E-value=3.3e-12 Score=111.99 Aligned_cols=182 Identities=10% Similarity=0.087 Sum_probs=147.9
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh-----hhhcccccccEEEEeeeCceeEEEEeeccchHHHHHH
Q 026322 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNE-----YAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLE 78 (240)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~e-----~~y~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~ll~ 78 (240)
.|.+.+.+.+..+...+++...+++.++..++...... ..-.....|.+++...+.++..+.+++.+++++..++
T Consensus 32 ~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~l~~~G~~~na~t~~d~t~~~~~~~~~~l~~~l~ 111 (446)
T 1pp9_A 32 QPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVE 111 (446)
T ss_dssp CSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTHHHHHHHHTTCEEEEEECSSCEEEEEEEEGGGHHHHHH
T ss_pred CCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCEEEEEEcCCeEEEEEEecHHHHHHHHH
Confidence 37888899999888777778889999999888543321 1111122366788887888899999999999999999
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccC-CCCC--hhHHHhhCCCCCHHHHHHHHHHHh
Q 026322 79 TIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD-QTWP--WMEELEVLPHLEAEDLAKFVPMML 155 (240)
Q Consensus 79 ~i~~~l~~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~-~~~~--~~e~l~~l~~it~edl~~f~~~~l 155 (240)
.+.+.+.++.+++++|++.|+.+..+++....+ |...+...+...++. +.|. .....+.|+.++.+++++|+++++
T Consensus 112 ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~~~~~~l~~f~~~~y 190 (446)
T 1pp9_A 112 LLADIVQNCSLEDSQIEKERDVILQELQENDTS-MRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHY 190 (446)
T ss_dssp HHHHHHHHBCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhcC-HHHHHHHHHHHHhcCCCCCCCCCcCCHHHHHhCCHHHHHHHHHhcc
Confidence 999999999999999999999999999977665 989999888887775 3332 223456667789999999999999
Q ss_pred hcceeeEEeecCCChHHHHHHHHHHHHhhcC
Q 026322 156 SRTFLECYIAGNIESNEAGSIIQYIEDVFFK 186 (240)
Q Consensus 156 ~~~~~~~lv~GNi~~~~A~~l~~~~~~~l~~ 186 (240)
.+.++.+.|+||++.+++.++++.....++.
T Consensus 191 ~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~ 221 (446)
T 1pp9_A 191 KAPRMVLAAAGGLEHRQLLDLAQKHFSGLSG 221 (446)
T ss_dssp CGGGEEEEEEESCCHHHHHHHHHHHHTTSCS
T ss_pred CCCCEEEEEEcCCCHHHHHHHHHHHhccCCC
Confidence 9999999999999999999888877665653
No 14
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=99.40 E-value=4.6e-12 Score=110.77 Aligned_cols=181 Identities=8% Similarity=0.048 Sum_probs=146.3
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh-----hhhcccccccEEEEeeeCceeEEEEeeccchHHHHHHH
Q 026322 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNE-----YAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLET 79 (240)
Q Consensus 5 Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~e-----~~y~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~ll~~ 79 (240)
|.+.+.+.+..+...+++...+++.++..++...... ..-.....|.+++.+.+.....+.+++.+++++.+++.
T Consensus 27 ~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~~~l~~~l~~~g~~~na~t~~~~t~~~~~~~~~~l~~~l~l 106 (443)
T 1hr6_B 27 SSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDI 106 (443)
T ss_dssp SEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBHHHHHHHHHHTTCEEEEEECSSEEEEEEEEEGGGHHHHHHH
T ss_pred CEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCeEEEEECCCeEEEEEEecHHHHHHHHHH
Confidence 4788899999888777777888999998887543221 11111123667788877888999999999999999999
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccC-CCCC--hhHHHhhCCCCCHHHHHHHHHHHhh
Q 026322 80 IFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD-QTWP--WMEELEVLPHLEAEDLAKFVPMMLS 156 (240)
Q Consensus 80 i~~~l~~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~-~~~~--~~e~l~~l~~it~edl~~f~~~~l~ 156 (240)
+.+.+.++.+++++|++.|+.+..+++....+ |...+...+...++. +++. .....+.|+.+|.+++++|+++++.
T Consensus 107 l~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~l~~f~~~~y~ 185 (443)
T 1hr6_B 107 LSDILTKSVLDNSAIERERDVIIRESEEVDKM-YDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKNYK 185 (443)
T ss_dssp HHHHHHSBCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHHCCHHHHHHHHHHHCC
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhhhCC-hHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhCCHHHHHHHHHhcCc
Confidence 99999999999999999999999999987665 999999888888775 3332 2234566677899999999999999
Q ss_pred cceeeEEeecCCChHHHHHHHHHHHHhhcC
Q 026322 157 RTFLECYIAGNIESNEAGSIIQYIEDVFFK 186 (240)
Q Consensus 157 ~~~~~~lv~GNi~~~~A~~l~~~~~~~l~~ 186 (240)
+.++.+.|+||++.+++.++++.....++.
T Consensus 186 ~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~ 215 (443)
T 1hr6_B 186 GDRMVLAGAGAVDHEKLVQYAQKYFGHVPK 215 (443)
T ss_dssp GGGEEEEEEESCCHHHHHHHHHHHHTTSCC
T ss_pred CCCEEEEEEcCCCHHHHHHHHHHHhcCCCC
Confidence 999999999999999999988877666653
No 15
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.39 E-value=4.5e-12 Score=121.65 Aligned_cols=180 Identities=13% Similarity=0.137 Sum_probs=143.5
Q ss_pred CCCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hhhhhhhc-------ccccccEE-EE--eeeC-----ceeEEE
Q 026322 2 FSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLD-YLNEYAYY-------AQVAGLDY-GI--NHTE-----SGFEVT 65 (240)
Q Consensus 2 F~~Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~-~l~e~~y~-------a~~agl~~-~~--~~~~-----~gi~l~ 65 (240)
|..|.+.+.+.+..+.. ++....++.|++.++.+ .+....|. +..+|+++ ++ +.+. .++.++
T Consensus 570 ~~~~~v~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~Gt~~~s~~el~~~l~~~~ggl~~~~~~~~~~~~~~~~~~~~i~ 647 (995)
T 2fge_A 570 FTNDIIYTEVVFDIGSL--KHELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVYPLTSSVRGKDEPCSKIIVR 647 (995)
T ss_dssp CCSSEEEEEEEEECTTS--CTTTGGGHHHHHHHHHHSCCSSSCHHHHHHHHHHHSSEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCCeEEEEEEeeCCCC--CHHHhhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCceEeeccccccCccccccceEEEE
Confidence 56788888888877654 56677889999999987 55544332 35567777 44 4444 789999
Q ss_pred EeeccchHHHHHHHHHHHhhcCCCChh-hHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCCC------------h
Q 026322 66 VVGYNHKLRILLETIFQKIAQFKVKPD-RFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWP------------W 132 (240)
Q Consensus 66 v~G~s~kl~~ll~~i~~~l~~~~~~~~-~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~------------~ 132 (240)
+++++++++.+++.+.+.+.++.++++ +|+++|++++.++++...+.|+..|...+..++.+..|- .
T Consensus 648 ~~~l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~gl~~~~~~ 727 (995)
T 2fge_A 648 GKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAMLNIAGWMSEQMGGLSYLEFL 727 (995)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCHHHHHHHHHHSHHHHHHH
T ss_pred EEEehhhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhCChhHHHHHHHccHHHHHHH
Confidence 999999999999999999999999998 999999999999999987768999998887765532221 1
Q ss_pred hHHH----hhCCCCCHHHHHHHHHHHhhcceeeEEeecCCCh-HHHHHHHHHHHHhh
Q 026322 133 MEEL----EVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIES-NEAGSIIQYIEDVF 184 (240)
Q Consensus 133 ~e~l----~~l~~it~edl~~f~~~~l~~~~~~~lv~GNi~~-~~A~~l~~~~~~~l 184 (240)
.++. +.++.+ .+++++|++.++...+++++|+||++. +++.++++.....+
T Consensus 728 ~~l~~~~~e~~~~i-~~~L~~~~~~~~~~~~~~~~v~Gd~~~~~~~~~~~~~~~~~l 783 (995)
T 2fge_A 728 HTLEKKVDEDWEGI-SSSLEEIRRSLLARNGCIVNMTADGKSLTNVEKSVAKFLDLL 783 (995)
T ss_dssp HHHHHHHHHCHHHH-HHHHHHHHHHHCCSTTCEEEEEECHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhhhcCHHHH-HHHHHHHHHHHcCcCCcEEEEEeCHHHHHHHHHHHHHHHHhh
Confidence 2222 557888 999999999999999999999999995 88888887766656
No 16
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=99.34 E-value=1.8e-11 Score=109.07 Aligned_cols=181 Identities=11% Similarity=0.023 Sum_probs=135.4
Q ss_pred CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhh---hc------ccccccEEEEeeeCceeEEEEeecc---
Q 026322 3 STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYA---YY------AQVAGLDYGINHTESGFEVTVVGYN--- 70 (240)
Q Consensus 3 ~~Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~e~~---y~------a~~agl~~~~~~~~~gi~l~v~G~s--- 70 (240)
..|++.+.+.+..+...+++...+++.++..++........ +. ....|-+++.+.+.+...+.++..+
T Consensus 46 ~~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~~~~~~~~~G~~~na~t~~d~t~y~~~~~~~~~ 125 (492)
T 3go9_A 46 PSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASFTPAQLQSLWQQGIDNERPLPPAITSYDFTLYSLSLPNNRP 125 (492)
T ss_dssp TTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCHHHHHHHHHTCSCSSSCCCSEEECSSCEEEEEEECTTCH
T ss_pred CCCeEEEEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCcceEeCCCeEEEEEECCCCcH
Confidence 45789999999999988999999999999999976543221 11 1113445566666677888888888
Q ss_pred chHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCCChhHHHhhCCCCCHHHHHHH
Q 026322 71 HKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKF 150 (240)
Q Consensus 71 ~kl~~ll~~i~~~l~~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~e~l~~l~~it~edl~~f 150 (240)
++++..+..+.+.+.++.++++.|++.|...++.++....+ |...+... .+.....+...-..+.++.+|.+|+++|
T Consensus 126 ~~l~~~l~ll~d~~~~p~f~~~~~~~er~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~i~~it~~dL~~f 202 (492)
T 3go9_A 126 DLLKDALAWLSDTAGNLAVSEQTVNAALNTATDPIATFPQN-IQEPWWRY--RLKGSSLIGHDPGQPVTQPVDVEKLKQF 202 (492)
T ss_dssp HHHHHHHHHHHHHHHCCCCSHHHHHHHHTCSSCCEEESSSC-TTCHHHHH--HTTTSTTTTCCTTCCCCSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccc-hhhHHHHH--HhccCCcccCCCchhhhhcCCHHHHHHH
Confidence 78999999999999999999999999888666666554443 65444321 1111211111001257899999999999
Q ss_pred HHHHhhcceeeEEeecCCChHHHHHHHHHHHHhhcC
Q 026322 151 VPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFK 186 (240)
Q Consensus 151 ~~~~l~~~~~~~lv~GNi~~~~A~~l~~~~~~~l~~ 186 (240)
+++++.+.++.+.|+||++.+++.++++.....|+.
T Consensus 203 y~~~Y~p~n~~l~vvGdvd~~~~~~~i~~~f~~~~~ 238 (492)
T 3go9_A 203 YQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSELKG 238 (492)
T ss_dssp HHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCC
T ss_pred HHHhcCcCceEEEEEcCCCHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999999887766654
No 17
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.11 E-value=1.3e-09 Score=103.93 Aligned_cols=182 Identities=12% Similarity=0.005 Sum_probs=148.7
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh------hhhhcccccccEEEEeeeCceeEEEEeeccchHHHHH
Q 026322 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN------EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILL 77 (240)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~------e~~y~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~ll 77 (240)
.|++.+.+.+..+...+.+...+++.++..|+-.... +..-..+..|-+++.+.+.+...+.++.-++.+...+
T Consensus 40 ~~~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~NA~T~~d~T~y~~~~~~~~l~~~L 119 (939)
T 1q2l_A 40 AVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAV 119 (939)
T ss_dssp CSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEEEEECSSCEEEEEEECGGGHHHHH
T ss_pred CCceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCCcceEEECCCcEEEEEEeCHHHHHHHH
Confidence 5889999999999888888889999999888865422 2222223347788888888888888888999999999
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccC-CCCC--hhHHHhhCCC----CCHHHHHHH
Q 026322 78 ETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD-QTWP--WMEELEVLPH----LEAEDLAKF 150 (240)
Q Consensus 78 ~~i~~~l~~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~-~~~~--~~e~l~~l~~----it~edl~~f 150 (240)
..+.+.+.++.++++.|++.|..+..+++....+ |...+...+..++++ ++|. .-...+.|+. ++.+++++|
T Consensus 120 ~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~l~~f 198 (939)
T 1q2l_A 120 DRLADAIAEPLLDKKYAERERNAVNAELTMARTR-DGMRMAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQALKDF 198 (939)
T ss_dssp HHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHSSCTTSGGGSCCSCCHHHHSCBTTBCHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHhcCCCCCCccCCCCCHHHHhcCCCchHHHHHHHH
Confidence 9999999999999999999999999999987665 878888888888875 3332 2334566666 999999999
Q ss_pred HHHHhhcceeeEEeecCCChHHHHHHHHHHHHhhcC
Q 026322 151 VPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFK 186 (240)
Q Consensus 151 ~~~~l~~~~~~~lv~GNi~~~~A~~l~~~~~~~l~~ 186 (240)
+++++.+.++.+.|+||++.+++.++++.....++.
T Consensus 199 ~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f~~~~~ 234 (939)
T 1q2l_A 199 HEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPN 234 (939)
T ss_dssp HHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCC
T ss_pred HHhccCHhheEEEEEcCCCHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999999888776666654
No 18
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=98.95 E-value=8.8e-09 Score=98.72 Aligned_cols=183 Identities=10% Similarity=0.012 Sum_probs=144.3
Q ss_pred CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh------hhhcccccccEEEEeeeCceeEEEEeeccchHHHH
Q 026322 3 STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNE------YAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRIL 76 (240)
Q Consensus 3 ~~Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~e------~~y~a~~agl~~~~~~~~~gi~l~v~G~s~kl~~l 76 (240)
..|++.+.+.+..+...+.+...+++.++..++-..... +.-.....|-+.+...+.+.....+...++.+..+
T Consensus 53 ~~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA~T~~d~T~y~~~~~~~~l~~~ 132 (990)
T 3cww_A 53 TTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGA 132 (990)
T ss_dssp TCSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTCEEEEEECSSCEEEEEEEEGGGHHHH
T ss_pred CCCcEEEEEEecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHHcCCceeEEECCCceEEEEEeCHHHHHHH
Confidence 358999999999998878888899999999888654322 11112224556777777777888888899999999
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccC-CCCC--hhHHHhhCCCC-------CHHH
Q 026322 77 LETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD-QTWP--WMEELEVLPHL-------EAED 146 (240)
Q Consensus 77 l~~i~~~l~~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~-~~~~--~~e~l~~l~~i-------t~ed 146 (240)
+..+.+.+.++.++++.|++.|..+..+++....+ |...+...+..++.+ ++|. .-...+.|..+ +.++
T Consensus 133 l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~~~~-~~~~~~~~~~~~~~~~~py~~~~~G~~~~l~~~~~~~~~~~~~~ 211 (990)
T 3cww_A 133 LDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMN-DAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQE 211 (990)
T ss_dssp HHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHTSCTTSGGGCCCSCCHHHHTHHHHHTTCCHHHH
T ss_pred HHHHHHHHhCcCCCHHHHHHHHHHHHHHHHhccCC-hHHHHHHHHHHhcCCCCCcccCCCCCHHHHhhccccccchHHHH
Confidence 99999999999999999999999999999886655 767777777777764 3332 22334555555 9999
Q ss_pred HHHHHHHHhhcceeeEEeecCCChHHHHHHHHHHHHhhcC
Q 026322 147 LAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFK 186 (240)
Q Consensus 147 l~~f~~~~l~~~~~~~lv~GNi~~~~A~~l~~~~~~~l~~ 186 (240)
+++|+++++.+.++.+.|+||++.+++.++++.....++.
T Consensus 212 l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~ 251 (990)
T 3cww_A 212 LLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVEN 251 (990)
T ss_dssp HHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHhCCHhheEEEEEcCCCHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999998887666654
No 19
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=98.78 E-value=3e-07 Score=71.36 Aligned_cols=158 Identities=13% Similarity=0.063 Sum_probs=108.7
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHh----hhhhhhcccccccEEEEeee-----Cce-eEEEEeeccc-h
Q 026322 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDY----LNEYAYYAQVAGLDYGINHT-----ESG-FEVTVVGYNH-K 72 (240)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~----l~e~~y~a~~agl~~~~~~~-----~~g-i~l~v~G~s~-k 72 (240)
.|...+.+.+..|.. .++ ......++..+|... |.+.+.. .|+.|++++. ..| +.+.+..-.+ +
T Consensus 22 ~~~~~v~~~~~~~~~-~~~-d~~al~vl~~iLggg~sSrL~~~lre---~gl~y~~~~~~~~~~~~g~~~i~~~~~~~~~ 96 (197)
T 3ih6_A 22 GGTPLVAAMYHLPAA-GSP-DFVGLDLAATILADTPSSRLYHALVP---TKLASGVFGFTMDQLDPGLAMFGAQLQPGMD 96 (197)
T ss_dssp CCSCEEEEEEECCCT-TST-THHHHHHHHHHHHSSTTSHHHHHHTT---TTSCSEEEEEEETTSSSCEEEEEEECCTTSC
T ss_pred CCCceEEEEEecCCC-CCC-cHHHHHHHHHHHcCCCCchHHHHHHh---cCceEEEEeccccccCCeEEEEEEEECCCCC
Confidence 466777777777754 333 445567777777753 3333332 1444444332 223 4555555445 4
Q ss_pred HHHHHHHHHHHhhc---CCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCCChhHHHhhCCCCCHHHHHH
Q 026322 73 LRILLETIFQKIAQ---FKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAK 149 (240)
Q Consensus 73 l~~ll~~i~~~l~~---~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~e~l~~l~~it~edl~~ 149 (240)
...++..+.+.+.. -.+++++|+++|.+++.++.....+ +...|.......+....-...+..+.++++|.+|+++
T Consensus 97 ~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~-~~~~a~~l~~~~~~g~~~~~~~~~~~i~~vT~~dv~~ 175 (197)
T 3ih6_A 97 QDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYAD-PEKVGVALSEAIASGDWRLFFLQRDRVREAKLDDVQR 175 (197)
T ss_dssp HHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHTTCTTHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCHHHHHH
Confidence 77777777666655 4689999999999999999866554 8888888877777643334677899999999999999
Q ss_pred HHHHHhhcceeeEEeecC
Q 026322 150 FVPMMLSRTFLECYIAGN 167 (240)
Q Consensus 150 f~~~~l~~~~~~~lv~GN 167 (240)
+.+++|...+...++.|-
T Consensus 176 ~a~~~l~~~~~~~~~~~P 193 (197)
T 3ih6_A 176 AAVAYLVRSNRTEGRYIP 193 (197)
T ss_dssp HHHHHSSGGGCEEEEECC
T ss_pred HHHHhCCccCeEEEEEeC
Confidence 999999877777777764
No 20
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=98.60 E-value=1.3e-06 Score=84.91 Aligned_cols=171 Identities=8% Similarity=0.015 Sum_probs=128.2
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh----hhhcccc---cccEEEEeeeCceeEEEEeecc-chHHHHHHHHH
Q 026322 10 KIYFNCPHASSSPESEVLTDIFTRLLLDYLNE----YAYYAQV---AGLDYGINHTESGFEVTVVGYN-HKLRILLETIF 81 (240)
Q Consensus 10 ~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~e----~~y~a~~---agl~~~~~~~~~gi~l~v~G~s-~kl~~ll~~i~ 81 (240)
.+-++++ .+...+++.++..++-..... ..+.... .|-..+...+.+.....+...+ +.+..++..+.
T Consensus 114 ~vg~~te----p~~~~GvAH~lEHmlf~GS~k~p~~e~~~~l~~~slG~~lNA~T~~D~T~Y~~~~~~~~~l~~~L~l~~ 189 (1193)
T 3s5m_A 114 AFYVKTL----THSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHLNAYTFNDRTVYMAGSMNNKDFFNIMGVYM 189 (1193)
T ss_dssp EEEEECC----CSSSSCHHHHHHHHTTSCBTTBCCTTHHHHHHHSCCEEEEEEEECSSEEEEEEEESSHHHHHHHHHHHH
T ss_pred EEEECCC----CCCCchHHHHHHHHHhCCCCCCChhhHHHHHHHhccCceEEeEEcCCeEEEEEEecCHHHHHHHHHHHH
Confidence 4444443 345567888888887654332 1111111 2334555556667777888777 88999999999
Q ss_pred HHhhcCCCChhh--HHHH-----------------------------HHHHHHHHhhhcccChHHHHHHHHHHhccCC-C
Q 026322 82 QKIAQFKVKPDR--FSVI-----------------------------KEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-T 129 (240)
Q Consensus 82 ~~l~~~~~~~~~--F~~~-----------------------------k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~-~ 129 (240)
+.+.+|.++++. |.+- |..+..+++....+ |...+...+...+++. +
T Consensus 190 D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV~~E~k~~~~~-p~~~~~~~l~~~lf~~hp 268 (1193)
T 3s5m_A 190 DSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIVYNEMKGALSS-PLEDLYHEEMKYMFPDNV 268 (1193)
T ss_dssp HHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHHHHHHHHHTTC-HHHHHHHHHHHHHCTTSG
T ss_pred HHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHHHHHHHHHHhhCC-HHHHHHHHHHHHhCCCCC
Confidence 999999988877 8765 34677778777544 9999999998888864 3
Q ss_pred C--ChhHHHhhCCCCCHHHHHHHHHHHhhcceeeEEeecCCChHHHHHHHHHHHHhhc
Q 026322 130 W--PWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFF 185 (240)
Q Consensus 130 ~--~~~e~l~~l~~it~edl~~f~~~~l~~~~~~~lv~GNi~~~~A~~l~~~~~~~l~ 185 (240)
| +.....+.|..+|.+|+++|+++++.+.++.+.++||++.+++.++++.....++
T Consensus 269 Y~~~~~G~~e~I~~lt~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~v~~~f~~~~ 326 (1193)
T 3s5m_A 269 HSNNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNFVDQYLGQLD 326 (1193)
T ss_dssp GGSCTTCCHHHHTTCCHHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHhhCCHHHHHHHHHHhcCccceEEEEEecCCHHHHHHHHHHHhccCC
Confidence 3 3445678889999999999999999999999999999999999999988777665
No 21
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=98.43 E-value=4.8e-06 Score=71.85 Aligned_cols=162 Identities=10% Similarity=-0.001 Sum_probs=110.8
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-hhhhhhcccc--cccEEEEeeeC------ceeEEEEeeccchHHH
Q 026322 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDY-LNEYAYYAQV--AGLDYGINHTE------SGFEVTVVGYNHKLRI 75 (240)
Q Consensus 5 Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~-l~e~~y~a~~--agl~~~~~~~~------~gi~l~v~G~s~kl~~ 75 (240)
+.+.+.+.+..+.. .++ ......++..++... ++..++.... .|+.|++++.. ..+.+.+..-.++...
T Consensus 241 ~~~~v~~~~~~~~~-~~~-~~~~~~vl~~iLg~~~~~srL~~~lR~~~gl~y~v~~~~~~~~~~g~~~i~~~~~~~~~~~ 318 (424)
T 3amj_B 241 TQAHIAIGMPTLKR-GDP-DFFPLVVGNYALGGGGFESRLMKEIRDKRGLSYGAYSYFSPQKSMGLFQIGFETRAEKADE 318 (424)
T ss_dssp SEEEEEEEEEEEBT-TCT-THHHHHHHHHHHTTSGGGSHHHHHHTTTTCCEEEEEEEECCBSSCEEEEEEEEEESTTHHH
T ss_pred CccEEEeeccCCCC-CCc-chHHHHHHHHHhCCCCccchhHHHHHHhCCeEEEeeeeeccCCCceeEEEEEEeCcccHHH
Confidence 44555555554432 233 334457777777664 5555554332 35656554321 2356666655567777
Q ss_pred HHHHHHHHhh---cCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCCC-hhHHHhhCCCCCHHHHHHHH
Q 026322 76 LLETIFQKIA---QFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWP-WMEELEVLPHLEAEDLAKFV 151 (240)
Q Consensus 76 ll~~i~~~l~---~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~-~~e~l~~l~~it~edl~~f~ 151 (240)
+++.+.+.+. +..+++++|+++|..++.++...... |...+.......+....+. .++..+.++++|.+|++++.
T Consensus 319 ~~~~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a 397 (424)
T 3amj_B 319 AVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDS-NAKILGQVAVIGYYGLPLDYLDHYTERVQAVTVEQVREAF 397 (424)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGGGSS-HHHHHHHHHHHHHTTCCTTTTTSHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhHhcCC-HHHHHHHHHHHHHcCCChhHHHHHHHHHHcCCHHHHHHHH
Confidence 7776666555 45799999999999999998876554 7778877776666655554 56788999999999999999
Q ss_pred HHHhhcceeeEEeecCCC
Q 026322 152 PMMLSRTFLECYIAGNIE 169 (240)
Q Consensus 152 ~~~l~~~~~~~lv~GNi~ 169 (240)
++++.+.+..+++.|+-.
T Consensus 398 ~~~l~~~~~~~~~~~~~~ 415 (424)
T 3amj_B 398 ARHVKRENLITVVVGGKA 415 (424)
T ss_dssp HHHCCGGGCEEEEEECC-
T ss_pred HHhcCccceEEEEECChh
Confidence 999988888888888754
No 22
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=98.41 E-value=1.2e-06 Score=84.09 Aligned_cols=164 Identities=13% Similarity=0.087 Sum_probs=121.0
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhh----hccc---ccccEEEEeeeCceeEEEEeec-cchHHHHHHHHHHHhhcCCC--C
Q 026322 21 SPESEVLTDIFTRLLLDYLNEYA----YYAQ---VAGLDYGINHTESGFEVTVVGY-NHKLRILLETIFQKIAQFKV--K 90 (240)
Q Consensus 21 s~~~~~l~~L~~~ll~~~l~e~~----y~a~---~agl~~~~~~~~~gi~l~v~G~-s~kl~~ll~~i~~~l~~~~~--~ 90 (240)
.+...+++.++..++-......- +... ..|-..+...+.+.....+..- ++.+..++..+.+.+.+|.+ +
T Consensus 69 ~~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~T~~d~T~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~ 148 (995)
T 2fge_A 69 PKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDD 148 (995)
T ss_dssp CSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCEECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTS
T ss_pred CcCCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCCceeeECCCceEEEEecCCHHHHHHHHHHHHHHHhCCCCCCC
Confidence 34456888888888744322211 1111 1233344444444555555443 46889999999999999999 9
Q ss_pred hhhHHHH---------------HHHHHHHHhhhcccChHHHHHHHHHHhccC-CCCC--hhHHHhhCCCCCHHHHHHHHH
Q 026322 91 PDRFSVI---------------KEMVTKEYHNNKFLQPFQLAMYYCSLILQD-QTWP--WMEELEVLPHLEAEDLAKFVP 152 (240)
Q Consensus 91 ~~~F~~~---------------k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~-~~~~--~~e~l~~l~~it~edl~~f~~ 152 (240)
++.|++- |..+..+++....+ |...+...+...+++ ++|. .-...+.|+.+|.+++++|++
T Consensus 149 ~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~-p~~~~~~~~~~~~~~~~py~~~~~G~~~~i~~~t~~~l~~f~~ 227 (995)
T 2fge_A 149 AHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQ-PDNILGRIAQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHR 227 (995)
T ss_dssp SHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHTTS-HHHHHHHHHHHHHCTTSGGGSCTTCCTTTGGGCCHHHHHHHHH
T ss_pred HHHHHHhhhhhhcccccccccccchHHHHHHhhhCC-HHHHHHHHHHHHhCCCCCCCCCCCCChHhhhhcCHHHHHHHHH
Confidence 9999987 77888888876544 999999999888886 3333 345678888999999999999
Q ss_pred HHhhcceeeEEeecCCChHHHHHHHHHHHHhhc
Q 026322 153 MMLSRTFLECYIAGNIESNEAGSIIQYIEDVFF 185 (240)
Q Consensus 153 ~~l~~~~~~~lv~GNi~~~~A~~l~~~~~~~l~ 185 (240)
+++.+.++.+.|+||++.+++.++++.....++
T Consensus 228 ~~Y~p~n~~l~v~Gd~d~~~~~~~i~~~f~~~~ 260 (995)
T 2fge_A 228 QYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFE 260 (995)
T ss_dssp HHSSGGGEEEEEEESSCHHHHHHHHHHHHTTCC
T ss_pred HhCCccceEEEEEcCCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999887665554
No 23
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=98.36 E-value=1.8e-05 Score=68.24 Aligned_cols=162 Identities=11% Similarity=0.059 Sum_probs=108.3
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcccc--cccEEEEee-----eCce-eEEEEeeccchHHH
Q 026322 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQV--AGLDYGINH-----TESG-FEVTVVGYNHKLRI 75 (240)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~e~~y~a~~--agl~~~~~~-----~~~g-i~l~v~G~s~kl~~ 75 (240)
.+.+.+.+.+..+.. .++ ......++..++....+..++.... .|+.|++++ ...| +.+.+..=.++...
T Consensus 232 ~~q~~v~~~~~~~~~-~~~-d~~~l~vl~~iLgg~~~srL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~~~~~~~~~ 309 (421)
T 3hdi_A 232 TEQAHLCLGYPGLPI-GDK-DVYALVLLNNVLGGSMSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTGHDQLDD 309 (421)
T ss_dssp CSEEEEEEEEECCCT-TCT-THHHHHHHHHHHTSSSSSHHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEEEGGGHHH
T ss_pred CCceEEEEEEecCCC-CCc-hHHHHHHHHHHhCCCcccHHHHHHHHhcCCEEEEEEeecccCCCceEEEEEEeCHHHHHH
Confidence 456667777766543 333 3444566667766544444333222 244333322 1223 45555555567777
Q ss_pred HHHHHHHHhh---cCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhc-cCCCCChhHHHhhCCCCCHHHHHHHH
Q 026322 76 LLETIFQKIA---QFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLIL-QDQTWPWMEELEVLPHLEAEDLAKFV 151 (240)
Q Consensus 76 ll~~i~~~l~---~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll-~~~~~~~~e~l~~l~~it~edl~~f~ 151 (240)
+++.+.+.+. +..+++++++++|..++.++...... +...+.......+ .....+.++.++.++++|.+|++++.
T Consensus 310 ~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a 388 (421)
T 3hdi_A 310 LVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLES-TNSRMSRNGKNELLLKKHRSLDEMIEQINAVQKQDVSRLA 388 (421)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTSCCCCHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHcCCHHHHHHHH
Confidence 7777766654 44799999999999999998765554 7677766654444 34456678899999999999999999
Q ss_pred HHHhhcceeeEEeecCCC
Q 026322 152 PMMLSRTFLECYIAGNIE 169 (240)
Q Consensus 152 ~~~l~~~~~~~lv~GNi~ 169 (240)
++++ .....+.+.|+.+
T Consensus 389 ~~~~-~~~~~~~vvgp~~ 405 (421)
T 3hdi_A 389 KILL-SASPSISLINANG 405 (421)
T ss_dssp HHHT-TSCCEEEEEESSC
T ss_pred HHHc-ccCcEEEEECchh
Confidence 9999 8888999999854
No 24
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=98.33 E-value=5.2e-06 Score=71.84 Aligned_cols=161 Identities=9% Similarity=0.020 Sum_probs=106.8
Q ss_pred eeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-hhhhhhcccc--cccEEEEeee------CceeEEEEeeccchHHHH
Q 026322 6 KAFVKIYFNCPHASSSPESEVLTDIFTRLLLDY-LNEYAYYAQV--AGLDYGINHT------ESGFEVTVVGYNHKLRIL 76 (240)
Q Consensus 6 k~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~-l~e~~y~a~~--agl~~~~~~~------~~gi~l~v~G~s~kl~~l 76 (240)
.+.+.+.+..+.. .++ ......++..+|... ++..++.... .|+.|++++. ...+.+.+..=.++...+
T Consensus 249 ~~~v~~~~~~~~~-~~~-d~~~l~vl~~iLg~~~~~s~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~~~~~~~~~~~~ 326 (434)
T 3gwb_A 249 QTSLMLAQLGIDR-DDP-DYAAVSLGNQILGGGGFGTRLMSEVREKRGLTYGVYSGFTPMQARGPFMINLQTRAEMSEGT 326 (434)
T ss_dssp EEEEEEEEECCBT-TCT-THHHHHHHHHHHHSSSSCSHHHHHHTTTTCCCSCEEEEECCBSSCCEEEEEEEEEGGGHHHH
T ss_pred ceeEEecCcCCCC-CCc-chHHHHHHHHHhCCCcccchhHHHHHhhcCCcceeeeecccCCCceeEEEEEecchhhHHHH
Confidence 4555555555432 223 334556666676654 4444443322 2333333322 124566666666677777
Q ss_pred HHHHHHHhhc---CCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCCC-hhHHHhhCCCCCHHHHHHHHH
Q 026322 77 LETIFQKIAQ---FKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWP-WMEELEVLPHLEAEDLAKFVP 152 (240)
Q Consensus 77 l~~i~~~l~~---~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~-~~e~l~~l~~it~edl~~f~~ 152 (240)
++.+.+.+.. -.+++++|+++|..++.++...... +...+.......+....+. .++..+.++++|.+|++++.+
T Consensus 327 ~~~i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~ 405 (434)
T 3gwb_A 327 LKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTAS-NADIVGQLGAMGFYNLPLSYLEDFMRQSQELTVEQVKAAMN 405 (434)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCC-HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhccC-HHHHHHHHHHHHHcCCCccHHHHHHHHHHhCCHHHHHHHHH
Confidence 7766666554 4689999999999999998876554 8888887777766665554 577899999999999999999
Q ss_pred HHhhcceeeEEeecCCC
Q 026322 153 MMLSRTFLECYIAGNIE 169 (240)
Q Consensus 153 ~~l~~~~~~~lv~GNi~ 169 (240)
+++...+..+.++|+-.
T Consensus 406 ~~l~~~~~~~~vvg~~~ 422 (434)
T 3gwb_A 406 KHLNVDKMVIVSAGPTV 422 (434)
T ss_dssp HHCCGGGCEEEEEECCC
T ss_pred HhcChhhEEEEEEcCcc
Confidence 99998889999999743
No 25
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=98.32 E-value=3.8e-05 Score=67.52 Aligned_cols=162 Identities=14% Similarity=0.122 Sum_probs=109.9
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-----------hhhhhhcccc--cccEEEEeee-----Cce-eEE
Q 026322 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDY-----------LNEYAYYAQV--AGLDYGINHT-----ESG-FEV 64 (240)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~-----------l~e~~y~a~~--agl~~~~~~~-----~~g-i~l 64 (240)
.+.+.+.+.+..+.. .++. .....++..++... +...++.... .|+.|++.+. ..| +.+
T Consensus 241 ~~~~~v~~~~~~~~~-~~~d-~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i 318 (475)
T 1hr6_A 241 PELFHIQIGFEGLPI-DHPD-IYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGI 318 (475)
T ss_dssp CCCEEEEEEEECCCT-TCTT-HHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEEE
T ss_pred ccceEEEEEEecCCC-CCcc-HHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEEE
Confidence 345566677764442 3343 33346666666432 3344443221 2555555432 223 566
Q ss_pred EEeeccchHHHHHHHHHHHhhcC------CCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHh-ccCCCCChhHHHh
Q 026322 65 TVVGYNHKLRILLETIFQKIAQF------KVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLI-LQDQTWPWMEELE 137 (240)
Q Consensus 65 ~v~G~s~kl~~ll~~i~~~l~~~------~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~l-l~~~~~~~~e~l~ 137 (240)
.+..-.++....++.+.+.+... .+++++|+++|..++.++...... +...+......+ ......+.++..+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~ 397 (475)
T 1hr6_A 319 SLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLES-KLVELEDMGRQVLMHGRKIPVNEMIS 397 (475)
T ss_dssp EEEECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred EEEeCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 66666668888888877776553 489999999999999999875444 777777766654 3455556788899
Q ss_pred hCCCCCHHHHHHHHHHHhhc---------ceeeEEeecCC
Q 026322 138 VLPHLEAEDLAKFVPMMLSR---------TFLECYIAGNI 168 (240)
Q Consensus 138 ~l~~it~edl~~f~~~~l~~---------~~~~~lv~GNi 168 (240)
.++.+|.+|++++.++++.. ....+.+.|+.
T Consensus 398 ~i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~ 437 (475)
T 1hr6_A 398 KIEDLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDR 437 (475)
T ss_dssp HHHTCCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCG
T ss_pred HHHcCCHHHHHHHHHHHhhhccccccccCCCcEEEEECCc
Confidence 99999999999999999976 47888999986
No 26
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=98.32 E-value=1.4e-05 Score=68.77 Aligned_cols=161 Identities=12% Similarity=0.064 Sum_probs=112.5
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcccc-cccEEEEeeeC-----ce-eEEEEeeccchHHHHH
Q 026322 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQV-AGLDYGINHTE-----SG-FEVTVVGYNHKLRILL 77 (240)
Q Consensus 5 Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~e~~y~a~~-agl~~~~~~~~-----~g-i~l~v~G~s~kl~~ll 77 (240)
+.+.+.+.+..|.. .++. .....++..++....+..+|.... .|+.|++++.. .| +.+.+..=.++...++
T Consensus 234 ~q~~~~~~~~~~~~-~~~d-~~~l~vl~~iLgg~~~srL~~~lre~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~ 311 (406)
T 3eoq_A 234 RALYLVALFPGVAY-QEEA-RFPGQVLAHLLGEEGSGRLHFALVDKGLAEVASFGLEEADRAGTFHAYVQADPARKGEVL 311 (406)
T ss_dssp SSEEEEEEEECCCT-TCTT-HHHHHHHHHHHHCTTTSHHHHHTTTTTSEEEEEEEEEECSSCEEEEEEEEECGGGHHHHH
T ss_pred cceEEEEEecCCCC-CCch-HHHHHHHHHHhCCCcchHHHHHHHHcCCeeEEEEEecccCCceEEEEEEEeCcchHHHHH
Confidence 45666677766653 3443 345567777776544433332111 45655554421 23 5566666566788887
Q ss_pred HHHHHHhhcC---CCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhcc-CCCCChhHHHhhCCCCCHHHHHHHHHH
Q 026322 78 ETIFQKIAQF---KVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQ-DQTWPWMEELEVLPHLEAEDLAKFVPM 153 (240)
Q Consensus 78 ~~i~~~l~~~---~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~-~~~~~~~e~l~~l~~it~edl~~f~~~ 153 (240)
+.+.+.+... .+++++++++|.+++.++.....+ |...+.......+. .+..+.++.++.++++|.+|+++..++
T Consensus 312 ~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~ 390 (406)
T 3eoq_A 312 AVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGET-PMQRLFHLGMEYLYTGRYLSLEEVKARVQRVTSREVNALLER 390 (406)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHSSCCCHHHHHHHHHHCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCHHHHHHHHHH
Confidence 7777666554 699999999999999999766544 77888777766665 455568899999999999999999999
Q ss_pred HhhcceeeEEeecCCC
Q 026322 154 MLSRTFLECYIAGNIE 169 (240)
Q Consensus 154 ~l~~~~~~~lv~GNi~ 169 (240)
++..... +.+.|+..
T Consensus 391 ~l~~~~~-~~vvGp~~ 405 (406)
T 3eoq_A 391 GFLEKGL-YYLVLPHG 405 (406)
T ss_dssp TTTTSCE-EEEEECCC
T ss_pred hcCcccE-EEEECCCC
Confidence 9988777 89999753
No 27
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=98.31 E-value=3.2e-05 Score=66.93 Aligned_cols=160 Identities=11% Similarity=0.064 Sum_probs=106.7
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--------hhhhhhcccc--cccEEEEeee-----Cce-eEEEEee
Q 026322 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDY--------LNEYAYYAQV--AGLDYGINHT-----ESG-FEVTVVG 68 (240)
Q Consensus 5 Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~--------l~e~~y~a~~--agl~~~~~~~-----~~g-i~l~v~G 68 (240)
+.+.+.+.+..|.. .+ .......++..++... ++..++.... .|+.|++++. ..| +.+.+..
T Consensus 251 ~~~~v~~~~~~~~~-~~-~~~~~~~ll~~iLg~~~~~~~~~g~~s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~i~~~~ 328 (439)
T 1pp9_B 251 SLVHAALVAESAAI-GS-AEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTIS 328 (439)
T ss_dssp SEEEEEEEEECCCT-TS-HHHHHHHHHHHHHCCSCSBTTCCCTTCHHHHHHHHHCCSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred cceEEEEEecCCCC-Cc-hHHHHHHHHHHHhCCCcccCCCCCccCHHHHHHHHhcCCceEEEEeeccccccceEEEEEEe
Confidence 45566666666543 33 3445566777777432 2232222211 2343333322 224 4555555
Q ss_pred ccchHHHHHHHHHHHhhc---CCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhcc-CCCCChhHHHhhCCCCCH
Q 026322 69 YNHKLRILLETIFQKIAQ---FKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQ-DQTWPWMEELEVLPHLEA 144 (240)
Q Consensus 69 ~s~kl~~ll~~i~~~l~~---~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~-~~~~~~~e~l~~l~~it~ 144 (240)
=.++...+++.+.+.+.. ..+++++|+.+|..++.++...... |...+.......+. ......++..+.++++|.
T Consensus 329 ~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~ 407 (439)
T 1pp9_B 329 QAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVES-SEGFLDEVGSQALAAGSYTPPSTVLQQIDAVAD 407 (439)
T ss_dssp EGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHSSCCCHHHHHHHHHTCCH
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCH
Confidence 456777777777666544 5699999999999999998876554 77777776666664 444457888999999999
Q ss_pred HHHHHHHHHHhhcceeeEEeecCC
Q 026322 145 EDLAKFVPMMLSRTFLECYIAGNI 168 (240)
Q Consensus 145 edl~~f~~~~l~~~~~~~lv~GNi 168 (240)
+|++++.++++. .+..+.+.|+.
T Consensus 408 ~dv~~~a~~~~~-~~~~~~v~g~~ 430 (439)
T 1pp9_B 408 ADVINAAKKFVS-GRKSMAASGNL 430 (439)
T ss_dssp HHHHHHHHHHHH-SCEEEEEEECG
T ss_pred HHHHHHHHHHhc-CCceEEEECCc
Confidence 999999999998 67888889974
No 28
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=98.29 E-value=1.9e-05 Score=68.10 Aligned_cols=158 Identities=15% Similarity=0.188 Sum_probs=103.4
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH-------------hhhhhhhcccccccEEEEeee-----Cce-eEEE
Q 026322 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLD-------------YLNEYAYYAQVAGLDYGINHT-----ESG-FEVT 65 (240)
Q Consensus 5 Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~-------------~l~e~~y~a~~agl~~~~~~~-----~~g-i~l~ 65 (240)
|.+.+.+.+..|.. .++ ......++..++.. .|.+.+-. .|+.|++++. ..| +.+.
T Consensus 231 ~~~~v~~~~~~~~~-~~~-~~~~~~vl~~iL~~~~~~~~~~~~~~s~L~~~lRe---~gl~y~v~~~~~~~~~~g~~~i~ 305 (431)
T 3cx5_A 231 PKAWISLAVEGEPV-NSP-NYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQE---YQLCDNFNHFSLSYKDSGLWGFS 305 (431)
T ss_dssp SSEEEEEEEECCCT-TCT-THHHHHHHHHHHCEEETTCTTGGGSSCTHHHHHHT---TTCCSEEEEEEEECSSCEEEEEE
T ss_pred CceEEEEEeecCCC-CCc-cHHHHHHHHHHcCCCccCCCCccccccHHHHHHHh---cCceeeEeEeecccCCCceEEEE
Confidence 55666666666543 233 33444566666652 22222221 2343333322 234 4555
Q ss_pred Eeecc-chHHHHHHHHHHH---hhcCCCChhhHHHHHHHHHHHHhh--hcccChHHHHHHHHHHhc-cCCCCChhHHHhh
Q 026322 66 VVGYN-HKLRILLETIFQK---IAQFKVKPDRFSVIKEMVTKEYHN--NKFLQPFQLAMYYCSLIL-QDQTWPWMEELEV 138 (240)
Q Consensus 66 v~G~s-~kl~~ll~~i~~~---l~~~~~~~~~F~~~k~~l~~~~~n--~~~~~p~~~a~~~~~~ll-~~~~~~~~e~l~~ 138 (240)
+..=. ++...+++.+.+. +.+ .+++++|+++|..++.++.. ... .|...+.......+ .......++..+.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~l~~l~~-~~t~~el~~ak~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 383 (431)
T 3cx5_A 306 TATRNVTMIDDLIHFTLKQWNRLTI-SVTDTEVERAKSLLKLQLGQLYESG-NPVNDANLLGAEVLIKGSKLSLGEAFKK 383 (431)
T ss_dssp EEESCTTCHHHHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHSCS-CHHHHHHHHHHHHHHHSSCCCHHHHHHH
T ss_pred EeeCchhhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhhhccC-CHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 55544 5677666655554 455 79999999999999999987 544 48788877666543 4544557888999
Q ss_pred CCCCCHHHHHHHHHHHhhcceeeEEeecCCC
Q 026322 139 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIE 169 (240)
Q Consensus 139 l~~it~edl~~f~~~~l~~~~~~~lv~GNi~ 169 (240)
++++|.+|++++.++++...+..+.+.|+..
T Consensus 384 i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~ 414 (431)
T 3cx5_A 384 IDAITVKDVKAWAGKRLWDQDIAIAGTGQIE 414 (431)
T ss_dssp HHHCCHHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred HhcCCHHHHHHHHHHHcccCCcEEEEEcchh
Confidence 9999999999999999987778889999854
No 29
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=98.29 E-value=1.9e-05 Score=67.88 Aligned_cols=159 Identities=9% Similarity=0.035 Sum_probs=102.4
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcccc--cccEEEEeee---Cce-eEEEEeeccchHHHHHH
Q 026322 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQV--AGLDYGINHT---ESG-FEVTVVGYNHKLRILLE 78 (240)
Q Consensus 5 Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~~l~e~~y~a~~--agl~~~~~~~---~~g-i~l~v~G~s~kl~~ll~ 78 (240)
+.+.+.+.+..|....++ ......++..++....+..++.... .|+.|++++. ..| +.+.+..=.++...+++
T Consensus 253 ~~~~v~~~~~~~~~~~~~-~~~~~~vl~~iLg~~~~s~L~~~lRe~~glaY~v~~~~~~~~g~~~i~~~~~~~~~~~~~~ 331 (425)
T 3d3y_A 253 AQSKLNLAYNTDIYYGDS-YYFALQVFNGIFGGFPHSKLFMNVREKEHLAYYASSSIDTFRGFMTVQTGIDGKNRNQVLR 331 (425)
T ss_dssp SSEEEEEEEECCCCTTST-THHHHHHHHHHHTTSTTSHHHHHTTTTSCCCSEEEEEEETTTTEEEEEEEECGGGHHHHHH
T ss_pred cccEEEEEeecCCCCCCc-hHHHHHHHHHHhCCChhhHHHHHHHHhcCeEEEEeccccccCceEEEEEecCHhhHHHHHH
Confidence 455666666655323333 3455567777775433443333222 2444444332 134 44555444457777777
Q ss_pred HHHHHhh---cCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhcc-CCCCChhHHHhhCCCCCHHHHHHHHHHH
Q 026322 79 TIFQKIA---QFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQ-DQTWPWMEELEVLPHLEAEDLAKFVPMM 154 (240)
Q Consensus 79 ~i~~~l~---~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~-~~~~~~~e~l~~l~~it~edl~~f~~~~ 154 (240)
.+.+.+. +-.+++++|+++|..++.++...... |...+.......+. ......++..+.++++|.+|++++.+++
T Consensus 332 ~~~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~edv~~~a~~~ 410 (425)
T 3d3y_A 332 LISTELENIRLGKIRELEIEQTKAMLKNQYILALDN-AGAWLEKEYLNELMPQTMLTAEEWIARINAVTIPEIQEVAKRL 410 (425)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHSTTSCCCHHHHHHHHHHCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHhcccC-HHHHHHHHHHHHhhcCCCCCHHHHHHHHHhCCHHHHHHHHHhc
Confidence 6665554 45699999999999999998876554 87888877777776 4444578889999999999999999998
Q ss_pred hhcceeeEEeecC
Q 026322 155 LSRTFLECYIAGN 167 (240)
Q Consensus 155 l~~~~~~~lv~GN 167 (240)
+.. . ...+.|+
T Consensus 411 ~~~-~-~~~v~g~ 421 (425)
T 3d3y_A 411 ELQ-A-IFFLEGE 421 (425)
T ss_dssp EEE-E-EEEEEEE
T ss_pred cCc-e-EEEEeCC
Confidence 644 3 3355554
No 30
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=98.23 E-value=3.8e-05 Score=66.61 Aligned_cols=163 Identities=12% Similarity=0.105 Sum_probs=105.4
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH---------hhhhhhhccc--ccccEEEEee-----eCce-eEEEE
Q 026322 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLD---------YLNEYAYYAQ--VAGLDYGINH-----TESG-FEVTV 66 (240)
Q Consensus 4 ~Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~---------~l~e~~y~a~--~agl~~~~~~-----~~~g-i~l~v 66 (240)
.|.+.+.+.+..|.. .++ ......++..++.. .....++... ..|+.|+++. ...| +.+.+
T Consensus 244 ~~~~~v~~~~~~~~~-~~~-~~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~g~~~i~~ 321 (443)
T 1hr6_B 244 LPTTHIAIALEGVSW-SAP-DYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWGMYI 321 (443)
T ss_dssp CSEEEEEEEEECCCT-TCT-THHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSCEEEEEEE
T ss_pred ccceEEEEEEecCCC-CCc-cHHHHHHHHHHhCCCcccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCCceEEEEEE
Confidence 356667777766542 333 33444566666643 1222222111 1233333221 1223 34454
Q ss_pred eec--cchHHHHHHHHHHHh---hcCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHh-ccCCCCChhHHHhhCC
Q 026322 67 VGY--NHKLRILLETIFQKI---AQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLI-LQDQTWPWMEELEVLP 140 (240)
Q Consensus 67 ~G~--s~kl~~ll~~i~~~l---~~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~l-l~~~~~~~~e~l~~l~ 140 (240)
..= .++...+++.+.+.+ .+..+++++++++|..++.++...... |...+....... +.....+..+..+.++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~i~ 400 (443)
T 1hr6_B 322 VTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDG-STAIVEDIGRQVVTTGKRLSPEEVFEQVD 400 (443)
T ss_dssp EEETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCS-HHHHHHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred EecCChhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence 443 457777777666655 555699999999999999999876554 777777666554 4555566788899999
Q ss_pred CCCHHHHHHHHHHHhhcceeeEEeecCCC
Q 026322 141 HLEAEDLAKFVPMMLSRTFLECYIAGNIE 169 (240)
Q Consensus 141 ~it~edl~~f~~~~l~~~~~~~lv~GNi~ 169 (240)
++|.+|++++.++++...+..+.+.|+..
T Consensus 401 ~vt~~dv~~~a~~~l~~~~~~~~v~g~~~ 429 (443)
T 1hr6_B 401 KITKDDIIMWANYRLQNKPVSMVALGNTS 429 (443)
T ss_dssp TCCHHHHHHHHHHHSSSCCEEEEEEECGG
T ss_pred hCCHHHHHHHHHHHhccCCcEEEEECCcc
Confidence 99999999999999987788889999843
No 31
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=98.23 E-value=4.2e-05 Score=66.55 Aligned_cols=162 Identities=12% Similarity=0.059 Sum_probs=109.5
Q ss_pred eeEEEEEEeCCCC--CCCHHHHHHHHHHHHHHHHhhhhhhhccc--ccccEEEEeee------C-ce-eEEEEeeccch-
Q 026322 6 KAFVKIYFNCPHA--SSSPESEVLTDIFTRLLLDYLNEYAYYAQ--VAGLDYGINHT------E-SG-FEVTVVGYNHK- 72 (240)
Q Consensus 6 k~~i~~~i~~~~~--~~s~~~~~l~~L~~~ll~~~l~e~~y~a~--~agl~~~~~~~------~-~g-i~l~v~G~s~k- 72 (240)
.+.+.+.+..|.. ..+........++..++....+..++... ..|+.|++++. . .| +.+.+.+-.++
T Consensus 244 ~~~v~l~~~~~~~~~~~~~~~~~~~~vl~~iLg~~~~srL~~~lre~~gl~y~v~~~~~~~~~~~~g~~~i~~~~~~~~~ 323 (445)
T 3ami_A 244 LPYLALAWHVPAIVDLDKSRDAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGVPSKGVT 323 (445)
T ss_dssp SCEEEEEEEECCCSSTTCCHHHHHHHHHHHHHHSSTTCHHHHHTTTTSCCEEEEEEECCCCCSSCCEEEEEEEEECTTCC
T ss_pred ccEEEEEEEcCCcccccCChhHHHHHHHHHHHcCCcchHHHHHHhhcCCcEEEEEeeccccccCCCCeEEEEEEECCCCC
Confidence 3445555555541 22134455667788888765555444432 34666665442 1 23 45666555453
Q ss_pred HHHHHHHHHHHh---hcCCCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCC-ChhHHHhhCCCCCHHHHH
Q 026322 73 LRILLETIFQKI---AQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTW-PWMEELEVLPHLEAEDLA 148 (240)
Q Consensus 73 l~~ll~~i~~~l---~~~~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~~~-~~~e~l~~l~~it~edl~ 148 (240)
...+++.+.+.+ ..-.+++++|+++|..++.++...... +...+.......+....+ ...+..+.++.+|.+|++
T Consensus 324 ~~~~~~~i~~~l~~l~~~g~t~~el~~ak~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~vt~~dv~ 402 (445)
T 3ami_A 324 IAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYEQDS-LMGQATQIGGLEVLGLSWRDDDRFYQQLRSVTAAEVK 402 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHTTTCCTTHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHcCCChHHHHHHHHHHHcCCHHHHH
Confidence 666666655555 444699999999999999999876554 777888777777766444 456788999999999999
Q ss_pred HHHHHHhhcceeeEEeecCC
Q 026322 149 KFVPMMLSRTFLECYIAGNI 168 (240)
Q Consensus 149 ~f~~~~l~~~~~~~lv~GNi 168 (240)
++.++++...+..+.+.|.-
T Consensus 403 ~~a~~~l~~~~~~~~~~~p~ 422 (445)
T 3ami_A 403 AAAARLLTDDTLTVANLVPL 422 (445)
T ss_dssp HHHHTTSCSTTEEEEEEEEE
T ss_pred HHHHHHcCcCCeEEEEEccC
Confidence 99999998777788888863
No 32
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=98.19 E-value=6.3e-05 Score=65.45 Aligned_cols=107 Identities=7% Similarity=-0.019 Sum_probs=83.2
Q ss_pred eEEEEeeccchHHHHHHHHHHHhhcC--CCChhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHh-ccCCCCChhHHHhh
Q 026322 62 FEVTVVGYNHKLRILLETIFQKIAQF--KVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLI-LQDQTWPWMEELEV 138 (240)
Q Consensus 62 i~l~v~G~s~kl~~ll~~i~~~l~~~--~~~~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~l-l~~~~~~~~e~l~~ 138 (240)
+.+.+..=.++...+++.+.+.+... .+++++++++|..++.++...... |...+....... +.....+.++..+.
T Consensus 320 ~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~ 398 (446)
T 1pp9_A 320 LGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDG-TTPVCEDIGRSLLTYGRRIPLAEWESR 398 (446)
T ss_dssp EEEEEEECTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCS-HHHHHHHHHHHHHHTSSCCCHHHHHHH
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45555554567777777776655432 499999999999999999865444 877777765554 55555677888999
Q ss_pred CCCCCHHHHHHHHHHHhhcceeeEEeecCCC
Q 026322 139 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIE 169 (240)
Q Consensus 139 l~~it~edl~~f~~~~l~~~~~~~lv~GNi~ 169 (240)
++++|.+|++++.++++......+.+.|+.+
T Consensus 399 i~~vt~edv~~~a~~~~~~~~~~~~~~g~~~ 429 (446)
T 1pp9_A 399 IAEVDARVVREVCSKYFYDQCPAVAGFGPIE 429 (446)
T ss_dssp HHTCCHHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred HHcCCHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 9999999999999999987788889999865
No 33
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=97.83 E-value=0.0018 Score=57.26 Aligned_cols=180 Identities=8% Similarity=0.028 Sum_probs=106.6
Q ss_pred ceeEEEEEEeCCCCC-CCH---HHHHHHHHHHHHHHHhhhhhhhcccccccEEEEeeeC----ceeEEEEeeccchHHHH
Q 026322 5 PKAFVKIYFNCPHAS-SSP---ESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTE----SGFEVTVVGYNHKLRIL 76 (240)
Q Consensus 5 Pk~~i~~~i~~~~~~-~s~---~~~~l~~L~~~ll~~~l~e~~y~a~~agl~~~~~~~~----~gi~l~v~G~s~kl~~l 76 (240)
+...+.+-+..|... .+. +......+...++...+...+-.....|+.|++++.. ....+.+++=.++...+
T Consensus 265 ~q~~v~l~~~~~~~~~~d~~~l~~~~~~~v~~~iLg~~L~~~lre~~~~gl~y~~~s~~~~~~~~~~~~i~~~~~~~~~a 344 (492)
T 3go9_A 265 AQDTLSLMWDTPWHPIQDSMALSRYWRSDLAREALFWHIKQVLEKNNQKNLKLGFDCRVQYQRAQCAIHLNTPVENLTAN 344 (492)
T ss_dssp SSEEEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTCEEEEEEEEETTEEEEEEEEEECGGGHHHH
T ss_pred CCcEEEEEecCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCchhhhhhcceEEEEEcCcccHHHH
Confidence 444555555555432 222 1222344555555544443222212456666665431 23346667778888888
Q ss_pred HHHHHHHhhc---CCCChhhHHHHHHHHHHHHhhhc----ccChHHHHHHHHHHhccCCCC-ChhH---HH-hhCCCCCH
Q 026322 77 LETIFQKIAQ---FKVKPDRFSVIKEMVTKEYHNNK----FLQPFQLAMYYCSLILQDQTW-PWME---EL-EVLPHLEA 144 (240)
Q Consensus 77 l~~i~~~l~~---~~~~~~~F~~~k~~l~~~~~n~~----~~~p~~~a~~~~~~ll~~~~~-~~~e---~l-~~l~~it~ 144 (240)
+..+.+.+.. ..+++++++++|..++.++.... .+.+...|..+...++....+ ++++ .. +.++.+|.
T Consensus 345 ~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~ 424 (492)
T 3go9_A 345 MTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSGVVDIAPEQYQKLRQAFLSGLTL 424 (492)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHHHTCCCBCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHhcCCH
Confidence 8777776655 46999999999999998875532 333566777766656554333 4544 33 45899999
Q ss_pred HHHHHHHHHHhhcceeeEEeecCCChH-HHHHHHHHHHHhh
Q 026322 145 EDLAKFVPMMLSRTFLECYIAGNIESN-EAGSIIQYIEDVF 184 (240)
Q Consensus 145 edl~~f~~~~l~~~~~~~lv~GNi~~~-~A~~l~~~~~~~l 184 (240)
+|++++.++++......++|.|.=..+ ...++.....+..
T Consensus 425 edV~~~a~~~l~~~~~~vvvg~~~~~e~~~~~l~~~~~~~~ 465 (492)
T 3go9_A 425 AELNRELKQQLSQDTTLVLMQPKGEPEVNVKALQEIYNGIM 465 (492)
T ss_dssp HHHHHHHHHHHTSCCEEEEEEETTSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCeEEEEcCCCCCCccHHHHHHHHHHHh
Confidence 999999999998755544444433332 2334545554444
No 34
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=97.76 E-value=6e-05 Score=73.40 Aligned_cols=173 Identities=12% Similarity=0.165 Sum_probs=122.6
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hhhhhhh-------cccccccEEEEeee--------------Ccee
Q 026322 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLD-YLNEYAY-------YAQVAGLDYGINHT--------------ESGF 62 (240)
Q Consensus 5 Pk~~i~~~i~~~~~~~s~~~~~l~~L~~~ll~~-~l~e~~y-------~a~~agl~~~~~~~--------------~~gi 62 (240)
+.+++.+.|..+. -+.....+..||+.++.+ ......| ....+|++++.... ...+
T Consensus 738 GIvY~~l~fdl~~--l~~e~l~yl~Lf~~~L~~lGT~~~sy~el~~~i~~~tGGis~s~~~~~~~~~~~~~~~~~~~~~~ 815 (1193)
T 3s5m_A 738 GIVYLQFVFSLDH--LTVDELAYLNLFKTLILENKTNKRSSEDFVILREKNIGSMSANVALYSKDDHLNVTDKYNAQALF 815 (1193)
T ss_dssp TEEEEEEEEECTT--CCHHHHTTHHHHHHHTTTCCBSSSCHHHHHHHHHHHCSEEEEEEEEECCCBTTBCCCTTCCEEEE
T ss_pred CeEEEEEEEECCC--CCHHHHhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCceEEEeeeecccccccccccccccceE
Confidence 5667777777664 457888899999999854 3332222 34557888877542 1247
Q ss_pred EEEEeeccchHHHHHHHHHHHhhcCCCChh-hHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCC------Ch---
Q 026322 63 EVTVVGYNHKLRILLETIFQKIAQFKVKPD-RFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTW------PW--- 132 (240)
Q Consensus 63 ~l~v~G~s~kl~~ll~~i~~~l~~~~~~~~-~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~~~------~~--- 132 (240)
.++....+++++.+++.+-+.|.++.+++. ++..+..+...++++...+.++..|...+...+....+ +.
T Consensus 816 ~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~~s~~~~~~e~~~Gl~~~ 895 (1193)
T 3s5m_A 816 NLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNSKHYAHNIIYGYENY 895 (1193)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTTTCHHHHHHHHHHSHHHH
T ss_pred EEEEEEhhhcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHhcCcchhhhhhhCChHHH
Confidence 899999999999999999999999999764 79989999999998887776787777766555533111 11
Q ss_pred ---hHHHhh----CCCCCHHHHHHHHHHHhhcceeeEEeecCCC-hHHHHHHHHHH
Q 026322 133 ---MEELEV----LPHLEAEDLAKFVPMMLSRTFLECYIAGNIE-SNEAGSIIQYI 180 (240)
Q Consensus 133 ---~e~l~~----l~~it~edl~~f~~~~l~~~~~~~lv~GNi~-~~~A~~l~~~~ 180 (240)
.++++. .+.+ .++|+++++.+++..++.+.++|+.+ .+++.+.++.+
T Consensus 896 ~fl~~l~~~~e~~~~~l-~~~L~~i~~~if~~~nl~vsvtg~~~~~~~~~~~l~~~ 950 (1193)
T 3s5m_A 896 LKLQEQLELAENDFKTL-ENILVRIRNKIFNKKNLMVSVTSDYGALKHLFVNSNES 950 (1193)
T ss_dssp HHHHHHHHHHHHCHHHH-HHHHHHHHHHHSCSTTEEEEEEECGGGTHHHHTTTHHH
T ss_pred HHHHHHHHhhHhhHHHH-HHHHHHHHHHHcCCCCeEEEEEeChhhHHHHHHHHHHH
Confidence 111111 1123 67899999999999999999999986 36655444433
No 35
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=69.84 E-value=6.8 Score=31.98 Aligned_cols=111 Identities=12% Similarity=0.082 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccEEEEeeeCcee-EEEEeeccchHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 026322 24 SEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGF-EVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVT 102 (240)
Q Consensus 24 ~~~l~~L~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gi-~l~v~G~s~kl~~ll~~i~~~l~~~~~~~~~F~~~k~~l~ 102 (240)
......++..++...+++..=.+ ++-.+.. ....|+ .+.+. .++...+.+.+.+.+.+ .+++++++++|..++
T Consensus 233 ~~~~l~vl~~iLg~~lre~~gl~--~~~~~~~-~~~~g~~~i~~~--~~~~~~~~~~i~~~l~~-~~t~~el~~ak~~~~ 306 (352)
T 3cx5_B 233 SLAQYEVLANYLTSALSELSGLI--SSAKLDK-FTDGGLFTLFVR--DQDSAVVSSNIKKIVAD-LKKGKDLSPAINYTK 306 (352)
T ss_dssp THHHHHHHHHHHHSTTSTTGGGC--SEEEEEE-ETTEEEEEEEEE--ESCHHHHHHHHHHHHHH-HHSCEECGGGHHHHH
T ss_pred hHHHHHHHHHHhCcchhcccCce--EEEeecC-cCcceeEEEEEE--eCCHHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Confidence 34555677777766555532111 1211111 223343 44444 33444444444444443 378999999999999
Q ss_pred HHHhhhcccChHHHHHHHHHHhccCCCCChhHHHhhCCCCCHHHHHHHHHHHhhcceeeEEeecCCC
Q 026322 103 KEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIE 169 (240)
Q Consensus 103 ~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~e~l~~l~~it~edl~~f~~~~l~~~~~~~lv~GNi~ 169 (240)
.++...... +. ...+. .++.+|..+ + ..+.+.++|+++
T Consensus 307 ~~~~~~~~~-~~-------------~~~~~-----~i~~vt~~~--------~--~~~~~~~~G~~~ 344 (352)
T 3cx5_B 307 LKNAVQNES-VS-------------SPIEL-----NFDAVKDFK--------L--GKFNYVAVGDVS 344 (352)
T ss_dssp HHHHHHCCS-TT-------------CCCCS-----CGGGCCEEC--------C--CSCEEEEEESGG
T ss_pred HHHHhhhhc-cC-------------Cccce-----eeeeeeHhh--------c--CCceEEEEcccc
Confidence 998865443 31 11111 355566332 3 678899999866
No 36
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=52.61 E-value=31 Score=25.78 Aligned_cols=53 Identities=9% Similarity=0.171 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHHHHHhhh----hhhhcccccccEE--EEeeeCceeEEE-Eeeccch
Q 026322 20 SSPESEVLTDIFTRLLLDYLN----EYAYYAQVAGLDY--GINHTESGFEVT-VVGYNHK 72 (240)
Q Consensus 20 ~s~~~~~l~~L~~~ll~~~l~----e~~y~a~~agl~~--~~~~~~~gi~l~-v~G~s~k 72 (240)
++.+..++..++..+++.... -+.|.-++.|..| ......+.+.|+ .-|||+-
T Consensus 55 ~~k~~~a~~Gt~rsli~Nmi~GVt~Gf~~~L~ivGvGypira~~~g~~l~l~N~LG~shp 114 (178)
T 1vq8_E 55 DNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAP 114 (178)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECSSSCCEEEEETTEEEEESGGGCSSC
T ss_pred CCHHHHHHHHHHHHHHcCEEEEEccCeEEEEEEEeeCCceEEEEcCCEEEEEcccccccc
Confidence 467778888888888877553 4667777777777 666666666654 5688854
No 37
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=46.13 E-value=49 Score=21.52 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHHHHHHhhcceeeEEeecCCChHHHHHHHHHHHHhhcCC
Q 026322 139 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKG 187 (240)
Q Consensus 139 l~~it~edl~~f~~~~l~~~~~~~lv~GNi~~~~A~~l~~~~~~~l~~~ 187 (240)
++--+++|.+...+.+.++ ...++-..+++.++|+++++.+......-
T Consensus 10 ~~P~sy~Da~~I~d~Lr~~-~~VvvNL~~ld~~~AqRivDF~sG~~yal 57 (87)
T 3p04_A 10 VELHSFEDAQVIGGAFRDG-DAVVFDMSLLSREEARRIVDFAAGLCFAL 57 (87)
T ss_dssp EECSSGGGHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHHHHHHT
T ss_pred EecCcHHHHHHHHHHHHCC-CEEEEECCCCCHHHHHHHHHHhccceEEe
Confidence 4456789999887777655 67777788999999999999998876543
No 38
>2dbn_A Hypothetical protein YBIU; alpha/beta structure, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2dbi_A 2csg_A*
Probab=41.06 E-value=89 Score=27.02 Aligned_cols=86 Identities=15% Similarity=0.023 Sum_probs=53.4
Q ss_pred hhhHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCCChhHH-------HhhCCCCCHHHHHH------HHHHHhhc
Q 026322 91 PDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEE-------LEVLPHLEAEDLAK------FVPMMLSR 157 (240)
Q Consensus 91 ~~~F~~~k~~l~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~e~-------l~~l~~it~edl~~------f~~~~l~~ 157 (240)
+.+|..+|.+++.... .+..+...+...|... .+++ -+.+..|++.|+.+ +.+.+..
T Consensus 55 ~~rf~~~K~~L~~~~~------~v~~sw~rl~~~L~~~---v~~I~~~~~~G~~~iP~i~f~di~~~~~s~~~~~~ir~- 124 (461)
T 2dbn_A 55 KAAIRQMKHALRAQLG------DVQQIFNQLSDDIATR---VAEINALKAQGDAVWPVLSYADIKAGHVTAEQREQIKR- 124 (461)
T ss_dssp HHHHHHHHHHHHHHHS------CHHHHHHHHHHHHHHH---HHHHHHHHHTTCCSSCEEEHHHHHHTCCCHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHH---HHHHHHHHhcCCCCcceecHHHhcCCCCCHHHHHHHHh-
Confidence 3899999999988721 2333444443333221 1111 13556677777643 2233322
Q ss_pred ceeeEEeecCCChHHHHHHHHHHHHhhcCC
Q 026322 158 TFLECYIAGNIESNEAGSIIQYIEDVFFKG 187 (240)
Q Consensus 158 ~~~~~lv~GNi~~~~A~~l~~~~~~~l~~~ 187 (240)
+.-+.|-|-|.+++|....+.+.+-+..+
T Consensus 125 -rG~vVIRgvvp~e~A~~~~~~~~~yl~~n 153 (461)
T 2dbn_A 125 -RGCAVIKGHFPREQALGWDQSMLDYLDRN 153 (461)
T ss_dssp -HSEEEEETSSCHHHHHHHHHHHHHHHHHT
T ss_pred -ccEEEECCCCCHHHHHHHHHHHHHHHHhC
Confidence 45668999999999999999988888654
No 39
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=40.77 E-value=82 Score=23.39 Aligned_cols=52 Identities=19% Similarity=0.368 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHHHHhhh----hhhhcccccccEEEEeeeCceeEEEEeeccch
Q 026322 20 SSPESEVLTDIFTRLLLDYLN----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHK 72 (240)
Q Consensus 20 ~s~~~~~l~~L~~~ll~~~l~----e~~y~a~~agl~~~~~~~~~gi~l~v~G~s~k 72 (240)
++.+..++..++..+++.... -+.|.-++.|..|.+....+-+.| .-|||+-
T Consensus 56 ~~k~~~a~~Gt~rsli~Nmi~GVt~Gf~~~L~lvGvGyra~~~G~~l~l-~LG~Shp 111 (177)
T 1rl6_A 56 DEKHHRALHGTTRSLLANMVEGVSKGYEKALELVGVGYRASKQGKKLVL-SVGYSHP 111 (177)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEESTTCEEEEETTEEEE-ESSSSSC
T ss_pred CCHHHHHHHHHHHHHHhCEEEeEcCCcEEEEEEEeeceEEEecCCEEEE-EecCCcc
Confidence 467778888888888776543 355566666666655554444555 4466643
No 40
>2r9i_A Putative phage capsid protein; putative phage capsid domain, protein structure initi structural genomics; 2.60A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}
Probab=37.07 E-value=25 Score=24.04 Aligned_cols=45 Identities=9% Similarity=0.234 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHhh-cceeeEEeecCCChHHHHHHHHHHHHhhc
Q 026322 141 HLEAEDLAKFVPMMLS-RTFLECYIAGNIESNEAGSIIQYIEDVFF 185 (240)
Q Consensus 141 ~it~edl~~f~~~~l~-~~~~~~lv~GNi~~~~A~~l~~~~~~~l~ 185 (240)
.+.+.|+..+...++. ..+.+..|..++++.+|.+.++.+..++.
T Consensus 3 amnlkdllahrenlmdsakrarsaitddmdpadaaqavenvksiis 48 (141)
T 2r9i_A 3 AMNLKDLLAHRENLMDSAKRARSAITDDMDPADAAQAVENVKSIIS 48 (141)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHH
Confidence 4578888888888884 45778888999999998877777666553
No 41
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=35.42 E-value=34 Score=27.80 Aligned_cols=39 Identities=10% Similarity=0.133 Sum_probs=31.4
Q ss_pred CCCCCHHHHHHHHHHHhhcceeeEEeecCCChHHHHHHHHH
Q 026322 139 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQY 179 (240)
Q Consensus 139 l~~it~edl~~f~~~~l~~~~~~~lv~GNi~~~~A~~l~~~ 179 (240)
|.+.+.++++..++.. ..++.+.+.|+|+.+.+.++.+.
T Consensus 235 LDn~~~~~l~~av~~i--~~~v~ieaSGGI~~~~i~~~a~t 273 (298)
T 3gnn_A 235 LDNFTLDMMRDAVRVT--EGRAVLEVSGGVNFDTVRAIAET 273 (298)
T ss_dssp EESCCHHHHHHHHHHH--TTSEEEEEESSCSTTTHHHHHHT
T ss_pred ECCCCHHHHHHHHHHh--CCCCeEEEEcCCCHHHHHHHHHc
Confidence 3468899999888766 34788899999999999888764
No 42
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=34.04 E-value=86 Score=23.44 Aligned_cols=54 Identities=7% Similarity=0.192 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhhh----hhhhcccccccEE--EEeeeCceeEEE-Eeeccch
Q 026322 19 SSSPESEVLTDIFTRLLLDYLN----EYAYYAQVAGLDY--GINHTESGFEVT-VVGYNHK 72 (240)
Q Consensus 19 ~~s~~~~~l~~L~~~ll~~~l~----e~~y~a~~agl~~--~~~~~~~gi~l~-v~G~s~k 72 (240)
.++.+..++...+..+++.... -+.|.-.+.|..| ++....+.+.|+ .-|||+-
T Consensus 59 ~~~kk~~a~~gt~rsli~NmI~GVt~Gf~~kL~lvgvgypira~~~g~~l~l~n~LG~sh~ 119 (184)
T 3j21_F 59 FPRRKDVAIARTFAAHIRNMIKGVTEGFTYKLKVVYSHFPISVKVQGDEVIIENFLGEKAP 119 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECSSSCCEEEEETTEEEEECGGGCSSC
T ss_pred CCCHHHHHHHHHHHHHHHhhheeeccCeEEEEEEEEecccceEEEcCCEEEEEecCCcccc
Confidence 4566777788888877776543 3666666777766 555544445444 3588854
No 43
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=33.27 E-value=17 Score=18.61 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=16.3
Q ss_pred hhHHHhhCCCCCHHHHHHHHHHH
Q 026322 132 WMEELEVLPHLEAEDLAKFVPMM 154 (240)
Q Consensus 132 ~~e~l~~l~~it~edl~~f~~~~ 154 (240)
.+++++++.++|+-++..+++.+
T Consensus 3 ~~~iie~i~~lTvlEl~eLvk~l 25 (30)
T 1zav_U 3 IDEIIEAIEKLTVSELAELVKKL 25 (30)
T ss_dssp HHHHHHHHHHSBHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHH
Confidence 46677777777777777776654
No 44
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=30.18 E-value=38 Score=18.50 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=17.9
Q ss_pred hhHHHhhCCCCCHHHHHHHHHHHhhccee
Q 026322 132 WMEELEVLPHLEAEDLAKFVPMMLSRTFL 160 (240)
Q Consensus 132 ~~e~l~~l~~it~edl~~f~~~~l~~~~~ 160 (240)
.+++++.+.++|+-++..+++.+=....+
T Consensus 3 ~~~iie~i~~lTvlE~~eLvk~leekfGV 31 (40)
T 1dd4_C 3 IDEIIEAIEKLTVSELAELVKKLEDKFGV 31 (40)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHCC
Confidence 35666777777777666666665544443
No 45
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=29.38 E-value=1.1e+02 Score=23.37 Aligned_cols=52 Identities=17% Similarity=0.406 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHHHHHhhh----hhhhcccccccEEEEeeeCceeEEEEeeccch
Q 026322 20 SSPESEVLTDIFTRLLLDYLN----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHK 72 (240)
Q Consensus 20 ~s~~~~~l~~L~~~ll~~~l~----e~~y~a~~agl~~~~~~~~~gi~l~v~G~s~k 72 (240)
++.+..++..++..+++..+. -+.|.-++.|..|.+....+.+.| .-|||+-
T Consensus 84 ~~k~~ra~~Gt~rslI~NMI~GVt~Gf~kkLelvGvGYra~~~G~~L~L-~LG~SHp 139 (212)
T 1nkw_E 84 DAQKHRALHGLTRTLVANAVKGVSDGYTINLELRGVGFRAKLTGKALEM-NIGYSHP 139 (212)
T ss_pred CCHHHHHHHHHHHHHhhCEEEeeccCeEEEEEEeeeeeEEEcCCCEEEE-EccCCcc
Confidence 467778889999999887553 366777777777777765555666 5688864
No 46
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=26.15 E-value=84 Score=20.28 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=27.8
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i~ 81 (240)
.|...||.=-+....+| +++.+.|-.+.+..++..+-
T Consensus 24 ~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~ 61 (91)
T 2fhm_A 24 EADKRKLAGWVKNRDDGRVEILAEGPENALQSFVEAVK 61 (91)
T ss_dssp HHHHTTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHH
Confidence 45556776667777788 99999999888777766653
No 47
>2yu0_A Interferon-activable protein 205; PAAD_dapin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.10 E-value=67 Score=21.22 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=41.2
Q ss_pred hHHHhhCCCCCHHHHHHHHHHHhhcceeeEEeecCCChHHHHHHHHHHHHhhcCC
Q 026322 133 MEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKG 187 (240)
Q Consensus 133 ~e~l~~l~~it~edl~~f~~~~l~~~~~~~lv~GNi~~~~A~~l~~~~~~~l~~~ 187 (240)
--++..|+.+|-.+|+.|...+....+ +-.|+...-+.+++++.+.+.++..
T Consensus 8 i~LL~gLE~l~~~~Fk~fK~lL~~dL~---i~~~~le~~dridiAdlmv~~y~~~ 59 (94)
T 2yu0_A 8 IVLLRGLECINKHYFSLFKSLLARDLN---LERDNQEQYTTIQIANMMEEKFPAD 59 (94)
T ss_dssp CCTTTTTTTSCHHHHHHHHHHHHTTTC---CCSSCSSSCCHHHHHHHHHHHCTTT
T ss_pred hhHHHHHhcCCHHHHHHHHHHhccccC---CChHHHhhccHHHHHHHHHHHccch
Confidence 346889999999999999887777653 3457778888899999988877654
No 48
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=25.23 E-value=84 Score=20.13 Aligned_cols=37 Identities=24% Similarity=0.251 Sum_probs=28.4
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i~ 81 (240)
.|...||.=.+....+| +++.+.|-.+.+..++..+-
T Consensus 24 ~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~ 61 (88)
T 1ulr_A 24 KALELGLSGYAENLPDGRVEVVAEGPKEALELFLHHLK 61 (88)
T ss_dssp HHHHTTCEEEEEECTTSCEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHH
Confidence 45556776667777788 99999999888877777664
No 49
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=24.26 E-value=51 Score=26.80 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=31.4
Q ss_pred CCCCCHHHHHHHHHHHhhcceeeEEeecCCChHHHHHHHHH
Q 026322 139 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQY 179 (240)
Q Consensus 139 l~~it~edl~~f~~~~l~~~~~~~lv~GNi~~~~A~~l~~~ 179 (240)
|+..+.+++++.++..- .++.+.+.|||+.+.+.++.+.
T Consensus 233 LDn~s~~~l~~av~~~~--~~v~leaSGGIt~~~i~~~A~t 271 (300)
T 3l0g_A 233 LDNMSISEIKKAVDIVN--GKSVLEVSGCVNIRNVRNIALT 271 (300)
T ss_dssp EESCCHHHHHHHHHHHT--TSSEEEEESSCCTTTHHHHHTT
T ss_pred ECCCCHHHHHHHHHhhc--CceEEEEECCCCHHHHHHHHHc
Confidence 45789999998887653 3688889999999999988664
No 50
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A
Probab=22.22 E-value=1e+02 Score=20.37 Aligned_cols=36 Identities=33% Similarity=0.383 Sum_probs=27.2
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETI 80 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i 80 (240)
.|...||.=-+....+| +.+.+.|-.+.+..++..+
T Consensus 36 ~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l 72 (101)
T 2bjd_A 36 HAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERI 72 (101)
T ss_dssp HHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHH
T ss_pred HHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHH
Confidence 45556776667777788 9999999988877766655
No 51
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=22.21 E-value=1.4e+02 Score=18.99 Aligned_cols=47 Identities=17% Similarity=0.086 Sum_probs=36.1
Q ss_pred HHHhccCC--CCChhHHHhhCCCCCHHHHHHHHHHHhhcceeeEEeecC
Q 026322 121 CSLILQDQ--TWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGN 167 (240)
Q Consensus 121 ~~~ll~~~--~~~~~e~l~~l~~it~edl~~f~~~~l~~~~~~~lv~GN 167 (240)
+..++..+ .-+.+++..++..++.++...-+..+++..+++++=.|+
T Consensus 19 IL~l~~~~P~GItd~~L~~~~p~~~~~~r~~aIN~LL~~gkiel~K~~~ 67 (81)
T 2dk8_A 19 IIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNT 67 (81)
T ss_dssp HHHHHHHCSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHHTSEEEEECSS
T ss_pred HHHHHHhCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHcCCeEEEecCC
Confidence 34444433 345677888999999999999999999999999775543
No 52
>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Probab=21.58 E-value=47 Score=21.59 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=13.4
Q ss_pred eecCCChHHHHHHHHH
Q 026322 164 IAGNIESNEAGSIIQY 179 (240)
Q Consensus 164 v~GNi~~~~A~~l~~~ 179 (240)
.+|+|++++|.+++..
T Consensus 6 yhg~isR~~Ae~lL~~ 21 (96)
T 1jyr_A 6 FFGKIPRAKAEEMLSK 21 (96)
T ss_dssp BCCSCCHHHHHHHHHT
T ss_pred eccCCCHHHHHHHHhc
Confidence 4899999999987654
No 53
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=21.30 E-value=1.1e+02 Score=20.06 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=27.5
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i~ 81 (240)
.|...||.=-+....+| +++.+.|-.+.+..++..+-
T Consensus 30 ~A~~lgL~G~V~N~~dG~Vei~~eG~~~~v~~f~~~l~ 67 (99)
T 2vh7_A 30 EGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLE 67 (99)
T ss_dssp HHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHH
T ss_pred HHHHcCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHH
Confidence 45556776667777788 99999999888766666553
No 54
>2l6a_A Nacht, LRR and PYD domains-containing protein 12; NLRP12, pyrin, death domain, signaling protein; NMR {Homo sapiens}
Probab=21.14 E-value=98 Score=20.62 Aligned_cols=55 Identities=20% Similarity=0.050 Sum_probs=38.4
Q ss_pred ChhHHHhhCCCCCHHHHHHHHHHHhhc--ceeeEEeecCCChHHHHHHHHHHHHhhc
Q 026322 131 PWMEELEVLPHLEAEDLAKFVPMMLSR--TFLECYIAGNIESNEAGSIIQYIEDVFF 185 (240)
Q Consensus 131 ~~~e~l~~l~~it~edl~~f~~~~l~~--~~~~~lv~GNi~~~~A~~l~~~~~~~l~ 185 (240)
+.-.++..|+.++-++|+.|...+... ....-.-.|.+...+..++++.+.+...
T Consensus 11 ~~~~Ll~~Le~L~~~ElkkFK~~L~~~l~~g~~~Ip~~~le~ad~~dLa~lLv~~y~ 67 (102)
T 2l6a_A 11 GLCRLSTYLEELEAVELKKFKLYLGTATELGEGKIPWGSMEKAGPLEMAQLLITHFG 67 (102)
T ss_dssp SHHHHHHHHTTSCHHHHHHHHHHHHSCSTTTTCSSCSSTTTTCCHHHHHHHHHHHTC
T ss_pred cchhHHHHHHHcCHHHHHHHHHHHcccccccCCCCChHHHhcCCHHHHHHHHHHHcC
Confidence 445688899999999999997776651 1223344777777777777777766554
No 55
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=21.09 E-value=1e+02 Score=17.23 Aligned_cols=21 Identities=10% Similarity=0.116 Sum_probs=13.0
Q ss_pred CChhhHHHHHHHHHHHHhhhc
Q 026322 89 VKPDRFSVIKEMVTKEYHNNK 109 (240)
Q Consensus 89 ~~~~~F~~~k~~l~~~~~n~~ 109 (240)
.+..+++.+|+.++++.+...
T Consensus 4 ~~~~dle~~KqEIL~E~RkEl 24 (45)
T 1use_A 4 SDYSDLQRVKQELLEEVKKEL 24 (45)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 345667777777666666543
No 56
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=21.08 E-value=54 Score=24.74 Aligned_cols=58 Identities=14% Similarity=0.053 Sum_probs=36.3
Q ss_pred HHHHHHHhccCCCCChhHHHhhCCCCCHHHHHH---------HHHHHhhcceeeEEeecCCChHHHH
Q 026322 117 AMYYCSLILQDQTWPWMEELEVLPHLEAEDLAK---------FVPMMLSRTFLECYIAGNIESNEAG 174 (240)
Q Consensus 117 a~~~~~~ll~~~~~~~~e~l~~l~~it~edl~~---------f~~~~l~~~~~~~lv~GNi~~~~A~ 174 (240)
|...+..+|..+.|+..++-+.-..++.++-.. =+..++.+.+--++-.||++-.-..
T Consensus 16 alHaLNnLLQg~~Ft~~dL~~Ia~~Ld~~e~~~m~e~g~~~~d~~~~~~~ps~n~~~~GnfsInVl~ 82 (191)
T 3o65_A 16 AQHCLNNLLQGEYFSPVELASIAHQLDEEERMRMAEGGVTSEEYLAFLQQPSENMDDTGFFSIQVIS 82 (191)
T ss_dssp HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHGGGCTTSHHHHHHHTSCCSSBCTTCCBBHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHcCHHHHHHHhhcCCChHHHHHHhcCCCCCcccCCCccHHHHH
Confidence 566788889999999887655444444443221 0234555556566678999954433
No 57
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1
Probab=20.98 E-value=52 Score=21.53 Aligned_cols=16 Identities=13% Similarity=0.266 Sum_probs=13.4
Q ss_pred eecCCChHHHHHHHHH
Q 026322 164 IAGNIESNEAGSIIQY 179 (240)
Q Consensus 164 v~GNi~~~~A~~l~~~ 179 (240)
.+|+|++++|.+++..
T Consensus 6 yhg~isR~~Ae~lL~~ 21 (103)
T 1i3z_A 6 YHGCLTKRECEALLLK 21 (103)
T ss_dssp EESSCCHHHHHHHHHT
T ss_pred ccCCCCHHHHHHHHhh
Confidence 4899999999987643
No 58
>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein; 1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A
Probab=20.87 E-value=52 Score=21.67 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=13.8
Q ss_pred eecCCChHHHHHHHHH
Q 026322 164 IAGNIESNEAGSIIQY 179 (240)
Q Consensus 164 v~GNi~~~~A~~l~~~ 179 (240)
.+|+|++++|.+++..
T Consensus 8 yhg~isR~~Ae~lL~~ 23 (105)
T 1nrv_A 8 FHGRISREESHRIIKQ 23 (105)
T ss_dssp BCTTCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHh
Confidence 4899999999988754
No 59
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=20.86 E-value=1.1e+02 Score=20.25 Aligned_cols=37 Identities=14% Similarity=-0.045 Sum_probs=27.4
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i~ 81 (240)
.|...||.=-+....+| +++.+.|-.+.+..++..+-
T Consensus 33 ~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~ 70 (102)
T 1urr_A 33 EAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLE 70 (102)
T ss_dssp HHHHHTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHhCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHH
Confidence 34555776667777788 99999998888777666554
No 60
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=20.66 E-value=90 Score=25.06 Aligned_cols=39 Identities=10% Similarity=-0.018 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHHHhh-cceeeEEeecCCChHHHHHHHHH
Q 026322 141 HLEAEDLAKFVPMMLS-RTFLECYIAGNIESNEAGSIIQY 179 (240)
Q Consensus 141 ~it~edl~~f~~~~l~-~~~~~~lv~GNi~~~~A~~l~~~ 179 (240)
..+.++++..++.+-. ..++.+.+.|+|+.+.+.++.+.
T Consensus 222 n~~~~~~~~~v~~l~~~~~~v~ieaSGGIt~~~i~~~a~t 261 (284)
T 1qpo_A 222 NFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATYAET 261 (284)
T ss_dssp TCCHHHHHHHHHHHHHHCTTCEEEEESSCCTTTHHHHHHT
T ss_pred CCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhc
Confidence 5677777777665543 12567777888888887776544
No 61
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=20.25 E-value=89 Score=20.19 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=26.4
Q ss_pred cccccccEEEEeeeCce-eEEEEeeccchHHHHHHHH
Q 026322 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETI 80 (240)
Q Consensus 45 ~a~~agl~~~~~~~~~g-i~l~v~G~s~kl~~ll~~i 80 (240)
.|...||.=-+....+| +++.+.|-.+.+..++..+
T Consensus 26 ~A~~lgL~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l 62 (91)
T 1w2i_A 26 EARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWA 62 (91)
T ss_dssp HHHHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHT
T ss_pred HHHHcCCeEEEEECCCCCEEEEEEeCHHHHHHHHHHH
Confidence 34555776667777788 9999999888876666554
No 62
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=20.12 E-value=98 Score=25.37 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHHHHHhhcceeeEEeecCCChHHHHHHHH
Q 026322 139 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQ 178 (240)
Q Consensus 139 l~~it~edl~~f~~~~l~~~~~~~lv~GNi~~~~A~~l~~ 178 (240)
|.+.+.++++..++.. . .++.+.+.|+|+.+.+.++.+
T Consensus 257 LDn~~~~~l~~av~~l-~-~~v~ieaSGGIt~~~I~~~a~ 294 (320)
T 3paj_A 257 LDNFSLEMMREAVKIN-A-GRAALENSGNITLDNLKECAE 294 (320)
T ss_dssp EESCCHHHHHHHHHHH-T-TSSEEEEESSCCHHHHHHHHT
T ss_pred ECCCCHHHHHHHHHHh-C-CCCeEEEECCCCHHHHHHHHH
Confidence 3468899998888753 2 478899999999999887764
Done!