BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026323
(240 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1
PE=1 SV=1
Length = 252
Score = 211 bits (538), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 120/242 (49%), Positives = 151/242 (62%), Gaps = 23/242 (9%)
Query: 10 EWKSIASAATGSENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASL--AS 67
+WKS+ EN +G FDCNICLD ++PV+TLCGHLYCWPCIYKW++ QS S +
Sbjct: 23 KWKSMNDEV--EENISGGFDCNICLDCVHEPVITLCGHLYCWPCIYKWIYFQSVSSENSD 80
Query: 68 DEHPQCPVCKADISHTTMVPLYGRGQTPTESEPEGKVSHRGTVIPPRPPA--FGNQALLY 125
+ PQCPVCKA++S T++PLYGRG T+ EGK + G VIP RPP+ G LL
Sbjct: 81 QQQPQCPVCKAEVSEKTLIPLYGRGGQSTKPS-EGKAPNLGIVIPQRPPSPRCGGHFLLP 139
Query: 126 PTSNTGQQLPYRNPY--QSQNYDPHGQHSYGGFEGNSPSPLLNLGGTALSGFQHPVVGMF 183
T + QL R Y QSQ P Q SY SP+L+ GG + QH M
Sbjct: 140 TTDSNPSQLLQRRGYQQQSQTRQPAYQGSYMS------SPMLSPGGATANMLQH---SMI 190
Query: 184 GEMVYASVFGNSE-SLYTYPNSYH----SNPRLRRHEMQAVKSLNRISIFLFCCFLLCLI 238
GE+ YA +FGNS ++YTYPNSY+ S+PR+RR QA +SL RI FLFCCF+ CLI
Sbjct: 191 GEVAYARIFGNSSTTMYTYPNSYNLAISSSPRMRRQLSQADRSLGRICFFLFCCFVTCLI 250
Query: 239 VF 240
+F
Sbjct: 251 LF 252
>sp|O64425|RMA1_ARATH E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1
PE=1 SV=1
Length = 249
Score = 165 bits (418), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/244 (40%), Positives = 136/244 (55%), Gaps = 27/244 (11%)
Query: 6 YFAREWKSIASAATGSENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASL 65
+ +++ + I + + + FDCNICLD +PVVTLCGHL+CWPCI+KWL VQS S
Sbjct: 24 FKSKKPEPITVSVPSDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFS- 82
Query: 66 ASDE---HPQCPVCKADISHTTMVPLYGRGQTPTESEPEGKVSHRGTVIPPRPPAFGNQA 122
SDE H QCPVCK+ +SH+T+VPLYGRG+ T+ E + V R P P + +
Sbjct: 83 TSDEYQRHRQCPVCKSKVSHSTLVPLYGRGRCTTQEEGKNSVPKR-----PVGPVYRLEM 137
Query: 123 LLYPTSNTGQQLPYRNPYQSQNYDPHGQHSYGGFEGNSP-SPLLNLGGTALSGFQHPVVG 181
P ++T +L R + S EG P S +++ + S PV+
Sbjct: 138 PNSPYASTDLRLSQRVHFNSPQ------------EGYYPVSGVMSSNSLSYSAVLDPVMV 185
Query: 182 MFGEMVYASVFGNS-ESLYTYPNSYH----SNPRLRRHEMQAVKSLNRISIFLFCCFLLC 236
M GEMV +FG + YP++Y+ S PR+RR MQA KSL RI F CC +LC
Sbjct: 186 MVGEMVATRLFGTRVMDRFAYPDTYNLAGTSGPRMRRRIMQADKSLGRIFFFFMCCVVLC 245
Query: 237 LIVF 240
L++F
Sbjct: 246 LLLF 249
>sp|Q8GUK7|RMA3_ARATH E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3
PE=1 SV=1
Length = 243
Score = 164 bits (416), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 97/227 (42%), Positives = 134/227 (59%), Gaps = 22/227 (9%)
Query: 6 YFAREWKSIASAAT-GSENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSAS 64
+ A++ ++ +A T G N +GCFDCNICLD A+DPVVTLCGHL+CWPCIYKWLHVQ +S
Sbjct: 19 FIAKQKPNLTTAPTAGQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSS 78
Query: 65 LASDEHP-QCPVCKADISHTTMVPLYGRG-QTPTESEPEGKVSHRGTVIPPRPPAFGNQA 122
++ D+H CPVCK++I+ T++VPLYGRG +P+ + K T IP RP A
Sbjct: 79 VSVDQHQNNCPVCKSNITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRP---APSA 135
Query: 123 LLYPTSNTGQQLPYRNPYQSQNYDP---HGQHSYGGFEGNSPSPLLNLGGTALSGFQHPV 179
L P ++ P Q Q P + Q+S GF + L N + F +PV
Sbjct: 136 LRNPITSASSLNP---SLQHQTLSPSFHNHQYSPRGFTTTESTDLAN---AVMMSFLYPV 189
Query: 180 VGMFGEMVYASVFGNSESLYTYPNSYHSNPRLRRHEMQAVKSLNRIS 226
+GMFG++VY +FG T+ N+ + P + MQ KSLNR+S
Sbjct: 190 IGMFGDLVYTRIFG------TFTNTI-AQPYQSQRMMQREKSLNRVS 229
>sp|P93030|RMA2_ARATH E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana GN=RMA2
PE=1 SV=1
Length = 193
Score = 134 bits (337), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 111/223 (49%), Gaps = 54/223 (24%)
Query: 26 GCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLA-------SDEHPQCPVCKA 78
G FDCNICLD DPVVTLCGHL+CWPCI+KW + + S E P+CPVCK+
Sbjct: 17 GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKS 76
Query: 79 DISHTTMVPLYGRGQTPTESEPEGKVSHRGTVIPPRPPAFGNQALLYPTSNTGQQLPYRN 138
D+S T+VP+YGRGQ +S G+ +P RP +Y GQ+L
Sbjct: 77 DVSEATLVPIYGRGQKAPQS---------GSNVPSRP-----TGPVYDLRGVGQRL---G 119
Query: 139 PYQSQNYDPHGQHSYGGFEGNSPSPLLNLGGTALSGFQHPVVGMFGEMVYASVFGNSES- 197
+SQ Y + PV+G+ EMVY +FG S S
Sbjct: 120 EGESQRY--------------------------MYRMPDPVMGVVCEMVYRRLFGESSSN 153
Query: 198 LYTYPNSYHSNPRLRRHEMQAVKSLNRISIFLFCCFLLCLIVF 240
+ Y + N R RR MQA +SL+R+ +FL C +CL +F
Sbjct: 154 MAPYRD---MNVRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193
>sp|Q5ZIR9|RN185_CHICK E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus GN=RNF185 PE=2
SV=1
Length = 194
Score = 90.9 bits (224), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 59/100 (59%), Gaps = 14/100 (14%)
Query: 16 SAATGSENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPV 75
+ A + N + F+CNICLD A D V++LCGHL+CWPC+++WL + CPV
Sbjct: 27 NGAGDNTNQDNTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQV------CPV 80
Query: 76 CKADISHTTMVPLYGRGQTPTESEPEGKVSHRGTVIPPRP 115
CKA IS ++PLYGRG T + +P K PPRP
Sbjct: 81 CKAGISRDKVIPLYGRGST-GQQDPREKT-------PPRP 112
>sp|Q91YT2|RN185_MOUSE E3 ubiquitin-protein ligase RNF185 OS=Mus musculus GN=Rnf185 PE=2
SV=1
Length = 192
Score = 90.5 bits (223), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 61/110 (55%), Gaps = 21/110 (19%)
Query: 13 SIASAATGSENYNG-------CFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASL 65
S A +GS N G F+CNICLD A D V++LCGHL+CWPC+++WL +
Sbjct: 15 SNAGGPSGSSNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRP--- 71
Query: 66 ASDEHPQCPVCKADISHTTMVPLYGRGQTPTESEPEGKVSHRGTVIPPRP 115
CPVCKA IS ++PLYGRG T + +P K PPRP
Sbjct: 72 ---NRQVCPVCKAGISRDKVIPLYGRGST-GQQDPREKT-------PPRP 110
>sp|Q568Y3|RN185_RAT E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus GN=Rnf185
PE=2 SV=1
Length = 192
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 56/95 (58%), Gaps = 14/95 (14%)
Query: 21 SENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADI 80
S + F+CNICLD A D V++LCGHL+CWPC+++WL + CPVCKA I
Sbjct: 30 SGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQV------CPVCKAGI 83
Query: 81 SHTTMVPLYGRGQTPTESEPEGKVSHRGTVIPPRP 115
S ++PLYGRG T + +P K PPRP
Sbjct: 84 SRDKVIPLYGRGST-GQQDPREKT-------PPRP 110
>sp|Q96GF1|RN185_HUMAN E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens GN=RNF185 PE=1
SV=1
Length = 192
Score = 88.6 bits (218), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 56/95 (58%), Gaps = 14/95 (14%)
Query: 21 SENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADI 80
S + F+CNICLD A D V++LCGHL+CWPC+++WL + CPVCKA I
Sbjct: 30 SGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQV------CPVCKAGI 83
Query: 81 SHTTMVPLYGRGQTPTESEPEGKVSHRGTVIPPRP 115
S ++PLYGRG T + +P K PPRP
Sbjct: 84 SRDKVIPLYGRGST-GQQDPREKT-------PPRP 110
>sp|Q5RFK9|RN185_PONAB E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii GN=RNF185 PE=2
SV=1
Length = 192
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 56/95 (58%), Gaps = 14/95 (14%)
Query: 21 SENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADI 80
S + F+CNICLD A D V++LCGHL+CWPC+++WL + CPVCKA I
Sbjct: 30 SGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQV------CPVCKAGI 83
Query: 81 SHTTMVPLYGRGQTPTESEPEGKVSHRGTVIPPRP 115
S ++PLYGRG T + +P K PPRP
Sbjct: 84 SRDKVIPLYGRGST-GQQDPREKT-------PPRP 110
>sp|Q99942|RNF5_HUMAN E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1
Length = 180
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 62/109 (56%), Gaps = 20/109 (18%)
Query: 28 FDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVP 87
F+CNICL+ A + VV++CGHLYCWPC+++WL + E +CPVCKA IS +VP
Sbjct: 25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETRP------ERQECPVCKAGISREKVVP 78
Query: 88 LYGRG-QTPTESEPEGKVSHRGTVIPPRP----PAFGNQALLYPTSNTG 131
LYGRG Q P + PPRP PA ++ P +TG
Sbjct: 79 LYGRGSQKPQDPR---------LKTPPRPQGQRPAPESRGGFQPFGDTG 118
>sp|Q09463|RNF5_CAEEL RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1
Length = 235
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 62/110 (56%), Gaps = 17/110 (15%)
Query: 8 AREWKSIASAATGSENYN--GCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASL 65
A E K+ + T S N + F+CNICLD A D VV+LCGHL+CWPC+ +WL + +
Sbjct: 2 ASETKAPSEEPTSSSNKDESARFECNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNNQ 61
Query: 66 ASDEHPQCPVCKADISHTTMVPLYGRGQTPTESEPEGKVSHRGTVIPPRP 115
CPVCK+ I +VP+YGRG S+P KV PPRP
Sbjct: 62 V------CPVCKSAIDGNKVVPIYGRGG--DSSDPRKKV-------PPRP 96
>sp|Q6PC78|RN185_DANRE E3 ubiquitin-protein ligase RNF185 OS=Danio rerio GN=rnf185 PE=2
SV=1
Length = 194
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 14/91 (15%)
Query: 25 NGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTT 84
+ F+CNICLD + D V++LCGHL+CWPC+++WL + CPVCKA IS
Sbjct: 36 DSTFECNICLDTSKDAVISLCGHLFCWPCLHQWLETRPNRQV------CPVCKAGISRDK 89
Query: 85 MVPLYGRGQTPTESEPEGKVSHRGTVIPPRP 115
++PLYGRG T + +P K PPRP
Sbjct: 90 VIPLYGRGST-GQQDPREKT-------PPRP 112
>sp|Q5M807|RNF5_RAT E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2
SV=1
Length = 180
Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 61/109 (55%), Gaps = 20/109 (18%)
Query: 28 FDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVP 87
F+CNICL+ A + VV++CGHLYCWPC+++WL + + +CPVCKA IS +VP
Sbjct: 25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETRP------DRQECPVCKAGISREKVVP 78
Query: 88 LYGRG-QTPTESEPEGKVSHRGTVIPPRP----PAFGNQALLYPTSNTG 131
LYGRG Q P + PPRP PA ++ P + G
Sbjct: 79 LYGRGSQKPQDPR---------LKTPPRPQGQRPAPESRGGFQPFGDAG 118
>sp|O35445|RNF5_MOUSE E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1
Length = 180
Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 61/109 (55%), Gaps = 20/109 (18%)
Query: 28 FDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVP 87
F+CNICL+ A + VV++CGHLYCWPC+++WL + + +CPVCKA IS +VP
Sbjct: 25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETRP------DRQECPVCKAGISREKVVP 78
Query: 88 LYGRG-QTPTESEPEGKVSHRGTVIPPRP----PAFGNQALLYPTSNTG 131
LYGRG Q P + PPRP PA ++ P + G
Sbjct: 79 LYGRGSQKPQDPR---------LKTPPRPQGQRPAPESRGGFQPFGDAG 118
>sp|Q54S31|PEX10_DICDI Peroxisome biogenesis factor 10 OS=Dictyostelium discoideum
GN=pex10 PE=3 SV=2
Length = 374
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Query: 30 CNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLY 89
C +CL+ T+CGHL+CW CI +W + QCPVC+ IS T VPLY
Sbjct: 322 CTLCLEVRTHTTATICGHLFCWHCITEW---------CNNKEQCPVCRCPISIRTCVPLY 372
Query: 90 G 90
Sbjct: 373 N 373
>sp|Q9SYU4|PEX10_ARATH Peroxisome biogenesis factor 10 OS=Arabidopsis thaliana GN=PEX10
PE=1 SV=1
Length = 381
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 17 AATGSENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVC 76
+ + S + C +CL P T CGH++CW CI +W +E +CP+C
Sbjct: 314 STSDSTSTEAVGKCTLCLSTRQHPTATPCGHVFCWSCIMEW---------CNEKQECPLC 364
Query: 77 KADISHTTMVPLY 89
+ +H+++V LY
Sbjct: 365 RTPNTHSSLVCLY 377
>sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1
SV=1
Length = 1003
Score = 51.2 bits (121), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 6/52 (11%)
Query: 29 DCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADI 80
+C ICLD PV+T C H++C PCI + +H + H +CP+C+ +I
Sbjct: 753 ECAICLDSLTFPVITHCAHVFCKPCICQVIH------SEQPHAKCPLCRNEI 798
>sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1
SV=2
Length = 1009
Score = 50.8 bits (120), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 13/78 (16%)
Query: 9 REWKSIASAATGSENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASD 68
R+ K I S+ + E C ICLD PV+T C H++C PCI + + +
Sbjct: 746 RKMKLILSSGSDEE-------CAICLDSLTVPVITHCAHVFCKPCICQVIQNEQP----- 793
Query: 69 EHPQCPVCKADISHTTMV 86
H +CP+C+ DI ++
Sbjct: 794 -HAKCPLCRNDIHEDNLL 810
>sp|Q00940|PEX10_PICAN Peroxisome biogenesis factor 10 OS=Pichia angusta GN=PEX10 PE=3
SV=1
Length = 295
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 30 CNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPL 88
C +CL DP CGH++CW C+ W+ E +CP+C+A + + ++PL
Sbjct: 245 CMLCLSPMKDPSCGECGHVFCWKCVLDWVK---------ERQECPLCRAKMRESQLLPL 294
>sp|Q95216|HLTF_RABIT Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF
PE=1 SV=1
Length = 1005
Score = 49.7 bits (117), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 29 DCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADI 80
+C ICLD PV+T C H++C PCI + + + H +CP+C+ DI
Sbjct: 756 ECAICLDSLTVPVITHCAHVFCKPCICQCIQNEQP------HAKCPLCRNDI 801
>sp|O60106|YOXA_SCHPO LON peptidase N-terminal domain and RING finger protein C14F5.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC14F5.10c PE=4 SV=1
Length = 486
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 9/56 (16%)
Query: 22 ENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCK 77
EN + +C IC YDPVV+ CGH +C PC+ + A + PQCP C+
Sbjct: 161 ENVSRELECQICFGMLYDPVVSPCGHTFCGPCLMQ---------ALTQSPQCPTCR 207
>sp|Q1L5Z9|LONF2_HUMAN LON peptidase N-terminal domain and RING finger protein 2 OS=Homo
sapiens GN=LONRF2 PE=2 SV=3
Length = 754
Score = 48.9 bits (115), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
Query: 28 FDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81
F+C +C+ ++PV T CGH +C C+ + L D P CP+CK +S
Sbjct: 447 FECALCMRLLFEPVTTPCGHTFCLKCLERCL---------DHAPHCPLCKDKLS 491
>sp|Q9UUF0|PEX10_SCHPO Peroxisome biogenesis factor 10 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pas4 PE=3 SV=1
Length = 306
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 9/60 (15%)
Query: 29 DCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPL 88
C++C++F + P T CGH++CW CI W + + +CP+C+A S + ++ L
Sbjct: 255 KCSLCMEFIHCPAATECGHIFCWSCINGW---------TSKKSECPLCRAFSSPSKIILL 305
>sp|Q6CTZ8|RAD18_KLULA Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RAD18
PE=3 SV=1
Length = 427
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Query: 23 NYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82
+ + C+IC DF V+T CGH +C CI K+L +S +CP+C +D++
Sbjct: 25 DLDSLLRCHICKDFLKASVLTPCGHSFCSICIRKYLQKES---------KCPLCLSDLTE 75
Query: 83 TTM 85
+ +
Sbjct: 76 SML 78
>sp|Q6J6I9|BRCA1_MACMU Breast cancer type 1 susceptibility protein homolog OS=Macaca
mulatta GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 28 FDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTM 85
+C ICL+ +PV T C H++C C+ K L+ + QCP+CK DI+ ++
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCRFCMLKLLNQKKGP------SQCPLCKNDITKRSL 73
>sp|Q75EN0|RAD18_ASHGO Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=RAD18 PE=3 SV=1
Length = 443
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 23 NYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82
+ + C+IC D PV+T CGH +C CI ++L+ +S +CP+C A++
Sbjct: 25 DLDSLLRCHICKDMLQTPVLTQCGHTFCSLCIREYLNKES---------RCPLCLAELRQ 75
Query: 83 TTMVPLYGRGQ 93
+ + G+
Sbjct: 76 NMLQKEFLVGE 86
>sp|Q864U1|BRCA1_BOVIN Breast cancer type 1 susceptibility protein homolog OS=Bos taurus
GN=BRCA1 PE=1 SV=1
Length = 1849
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 28 FDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTM 85
+C ICL+ +PV T C H++C C+ K L+ + QCP+CK DI+ ++
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGP------SQCPLCKNDITKRSL 73
>sp|P38398|BRCA1_HUMAN Breast cancer type 1 susceptibility protein OS=Homo sapiens
GN=BRCA1 PE=1 SV=2
Length = 1863
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 28 FDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTM 85
+C ICL+ +PV T C H++C C+ K L+ + QCP+CK DI+ ++
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGP------SQCPLCKNDITKRSL 73
>sp|Q6J6J0|BRCA1_PONPY Breast cancer type 1 susceptibility protein homolog OS=Pongo
pygmaeus GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 28 FDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTM 85
+C ICL+ +PV T C H++C C+ K L+ + QCP+CK DI+ ++
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGP------SQCPLCKNDITKRSL 73
>sp|Q9GKK8|BRCA1_PANTR Breast cancer type 1 susceptibility protein homolog OS=Pan
troglodytes GN=BRCA1 PE=2 SV=2
Length = 1863
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 28 FDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTM 85
+C ICL+ +PV T C H++C C+ K L+ + QCP+CK DI+ ++
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGP------SQCPLCKNDITKRSL 73
>sp|Q6J6I8|BRCA1_GORGO Breast cancer type 1 susceptibility protein homolog OS=Gorilla
gorilla gorilla GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 28 FDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTM 85
+C ICL+ +PV T C H++C C+ K L+ + QCP+CK DI+ ++
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGP------SQCPLCKNDITKRSL 73
>sp|Q32NQ8|RNF10_XENLA RING finger protein 10 OS=Xenopus laevis GN=rnf10 PE=2 SV=1
Length = 756
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 11/54 (20%)
Query: 30 CNICLDFAYDPV---VTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADI 80
C ICL Y PV +T CGH++CWPCI +L SL+ + +CP+C + I
Sbjct: 206 CPICL---YPPVAAKITRCGHIFCWPCILHYL-----SLSEKDWSRCPICYSSI 251
>sp|Q95153|BRCA1_CANFA Breast cancer type 1 susceptibility protein homolog OS=Canis
familiaris GN=BRCA1 PE=3 SV=1
Length = 1878
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 28 FDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTM 85
+C ICL+ +PV T C H++C C+ K L+ + QCP+CK DI+ ++
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQRKGP------SQCPLCKNDITKRSL 73
>sp|A6NK02|TRI75_HUMAN Putative tripartite motif-containing protein 75 OS=Homo sapiens
GN=TRIM75 PE=5 SV=2
Length = 468
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 11/66 (16%)
Query: 13 SIASAATGSENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYK-WLHVQSASLASDEHP 71
++A+A TG C+ICLD+ DPV CGH +C CI + WL +Q E
Sbjct: 2 AVAAALTG---LQAEAKCSICLDYLSDPVTIECGHNFCRSCIQQSWLDLQ-------ELF 51
Query: 72 QCPVCK 77
CPVC+
Sbjct: 52 PCPVCR 57
>sp|Q7YR34|TRI26_PANTR Tripartite motif-containing protein 26 OS=Pan troglodytes
GN=TRIM26 PE=3 SV=1
Length = 539
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 30 CNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLY 89
C+ICLD+ DPV CGH++C C S P CP+CK + P++
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSC------TTDVRPISGSRPVCPLCKKPFKKENIRPVW 69
>sp|Q12899|TRI26_HUMAN Tripartite motif-containing protein 26 OS=Homo sapiens GN=TRIM26
PE=2 SV=1
Length = 539
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 30 CNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLY 89
C+ICLD+ DPV CGH++C C S P CP+CK + P++
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSC------TTDVRPISGSRPVCPLCKKPFKKENIRPVW 69
>sp|O77666|TRI26_PIG Tripartite motif-containing protein 26 OS=Sus scrofa GN=TRIM26
PE=3 SV=2
Length = 545
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 30 CNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLY 89
C+ICLD+ DPV CGH++C C +H S P CP+CK + + P++
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSCTTD-IHPVSGG-----RPVCPLCKKPFTKENIRPVW 69
>sp|O48700|PUB6_ARATH U-box domain-containing protein 6 OS=Arabidopsis thaliana GN=PUB6
PE=2 SV=2
Length = 771
Score = 45.1 bits (105), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 15/88 (17%)
Query: 30 CNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLY 89
C I L YDPV+ G Y CI KW SD H CP + + H ++ P Y
Sbjct: 281 CPISLQLMYDPVIIASGQTYERVCIEKWF--------SDGHNSCPKTQQQLPHLSLTPNY 332
Query: 90 G-RGQTPTESEPEGKVSHRGTVIPPRPP 116
+G + E G +P PP
Sbjct: 333 CVKGLIASWCE------QNGITVPTGPP 354
>sp|P62603|TRI26_RAT Tripartite motif-containing protein 26 OS=Rattus norvegicus
GN=Trim26 PE=2 SV=1
Length = 542
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 30 CNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLY 89
C+ICLD+ DPV CGH++C C S P CP+CK + P++
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSC------TSDIRPISGNRPVCPLCKKPFKKENIRPVW 69
>sp|Q496Y0|LONF3_HUMAN LON peptidase N-terminal domain and RING finger protein 3 OS=Homo
sapiens GN=LONRF3 PE=1 SV=1
Length = 759
Score = 45.1 bits (105), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 9/55 (16%)
Query: 28 FDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82
+C +C+ Y+PV T CGH +C C+ + L D + +CP+CK +S
Sbjct: 465 LECALCMRLFYEPVTTPCGHTFCLKCLERCL---------DHNAKCPLCKDGLSQ 510
Score = 31.2 bits (69), Expect = 6.0, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 28 FDCNICLDFAYDPVVTLCGHLYCWPCIYK 56
F C C F DPV CGH +C C+ +
Sbjct: 156 FKCRKCHGFLSDPVSLSCGHTFCKLCLER 184
>sp|Q9D4H7|LONF3_MOUSE LON peptidase N-terminal domain and RING finger protein 3 OS=Mus
musculus GN=Lonrf3 PE=2 SV=1
Length = 753
Score = 45.1 bits (105), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 9/50 (18%)
Query: 28 FDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCK 77
+C++C+ Y+PV T CGH +C C+ + L D + +CP+CK
Sbjct: 459 LECSLCMRLFYEPVTTPCGHTFCLKCLERCL---------DHNAKCPLCK 499
Score = 37.4 bits (85), Expect = 0.10, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 16 SAATGSENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPV 75
+AA E ++G F C C F DPV CGH +C C+ + A+D +C +
Sbjct: 146 AAAVAPEVWDG-FKCKKCHGFLSDPVSLWCGHTFCKLCLER-------GRAADR--RCAL 195
Query: 76 CKADISHTTMVPLYGRGQTPTESEPEGKVSHRGTVI 111
C +S ++ GR + P + + R V+
Sbjct: 196 CGVKLS--ALMAASGRARGPRRAGQPAPLQLRVNVV 229
>sp|Q99PN3|TRI26_MOUSE Tripartite motif-containing protein 26 OS=Mus musculus GN=Trim26
PE=2 SV=3
Length = 545
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 30 CNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLY 89
C+ICLD+ DPV CGH++C C S P CP+CK + P++
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSC------TSDIRPISGNRPVCPLCKKPFKKENIRPVW 69
>sp|Q12161|PSH1_YEAST RING finger protein PSH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PSH1 PE=1 SV=1
Length = 406
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 30 CNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81
C+IC D+ + P++T CGH YC+ C+ W + + CP C++DI+
Sbjct: 30 CSICHDYMFVPMMTPCGHNYCYGCLNTWFASNTQKELA-----CPQCRSDIT 76
>sp|Q8HXH0|LONF3_MACFA LON peptidase N-terminal domain and RING finger protein 3 OS=Macaca
fascicularis GN=LONRF3 PE=2 SV=1
Length = 718
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 28 FDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVP 87
+C +C+ Y+PV T CGH +C C+ + L D + +CP+CK +S
Sbjct: 424 LECALCMRLFYEPVTTPCGHTFCLKCLERCL---------DHNAKCPLCKDGLSQCLASR 474
Query: 88 LYGR 91
Y +
Sbjct: 475 KYSK 478
Score = 34.3 bits (77), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 28 FDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVP 87
F C C F DPV CGH +C C+ + A+D +C +C +S +
Sbjct: 156 FKCRKCHGFLSDPVSLSCGHTFCKLCLER-------GRAADR--RCALCGVKLSALMVAT 206
Query: 88 LYGRGQTPTESEP 100
RG +P
Sbjct: 207 GRARGSRRAGQQP 219
>sp|Q6FPI4|RAD18_CANGA Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=RAD18 PE=3 SV=1
Length = 411
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 22 ENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81
+ + C+IC DF +PV+T CGH +C CI +L P+CP+C ++
Sbjct: 19 QELDDLLRCHICKDFLKNPVLTPCGHTFCSLCIRGYLS---------NEPKCPLCLHELR 69
Query: 82 HTTMVPLY 89
+ + Y
Sbjct: 70 ESMLRSEY 77
>sp|Q1XHU0|TRI39_PANTR E3 ubiquitin-protein ligase TRIM39 OS=Pan troglodytes GN=TRIM39
PE=3 SV=1
Length = 518
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 22 ENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81
EN C++CL++ +PV+ CGH +C CI +W L D P CPVC+
Sbjct: 21 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWE----DLERD-FP-CPVCRKTSR 74
Query: 82 HTTMVP 87
+ ++ P
Sbjct: 75 YRSLRP 80
>sp|Q9HCM9|TRI39_HUMAN E3 ubiquitin-protein ligase TRIM39 OS=Homo sapiens GN=TRIM39 PE=1
SV=2
Length = 518
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 22 ENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81
EN C++CL++ +PV+ CGH +C CI +W L D P CPVC+
Sbjct: 21 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWE----DLERD-FP-CPVCRKTSR 74
Query: 82 HTTMVP 87
+ ++ P
Sbjct: 75 YRSLRP 80
>sp|Q9M9Y4|DRIP1_ARATH E3 ubiquitin protein ligase DRIP1 OS=Arabidopsis thaliana
GN=DRIP1 PE=1 SV=2
Length = 421
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 22 ENYNGCFDCNICLDFAYDPV-VTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADI 80
E C C+IC + D ++ C H +C CIY+ + DE CPVC D+
Sbjct: 8 ETMRACLSCSICDNILRDATTISECLHTFCRKCIYE-------KITEDEIETCPVCNIDL 60
Query: 81 SHTTMVPL 88
T + L
Sbjct: 61 GSTPLEKL 68
>sp|Q05568|PEX10_YEAST Peroxisome biogenesis factor 10 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PEX10 PE=1 SV=1
Length = 337
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
Query: 29 DCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCK 77
C +CL DP CGHL+CW C+ W E P+CP+C+
Sbjct: 285 KCILCLMNMSDPSCAPCGHLFCWSCLMSW---------CKERPECPLCR 324
>sp|Q9ESN2|TRI39_MOUSE E3 ubiquitin-protein ligase TRIM39 OS=Mus musculus GN=Trim39 PE=2
SV=1
Length = 488
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 22 ENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81
EN C++CL++ +PV+ CGH +C CI +W L D P CPVC+
Sbjct: 21 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWE----DLERD-FP-CPVCRKTSR 74
Query: 82 HTTMVP 87
+ ++ P
Sbjct: 75 YRSLRP 80
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,333,086
Number of Sequences: 539616
Number of extensions: 4465185
Number of successful extensions: 10219
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 342
Number of HSP's that attempted gapping in prelim test: 9697
Number of HSP's gapped (non-prelim): 716
length of query: 240
length of database: 191,569,459
effective HSP length: 114
effective length of query: 126
effective length of database: 130,053,235
effective search space: 16386707610
effective search space used: 16386707610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)