Query 026323
Match_columns 240
No_of_seqs 246 out of 1664
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 06:31:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026323.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026323hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03208 E3 ubiquitin-protein 100.0 2.3E-49 5E-54 335.1 14.0 172 23-240 14-193 (193)
2 KOG0823 Predicted E3 ubiquitin 100.0 2.3E-37 5E-42 266.5 9.2 185 24-240 44-230 (230)
3 KOG0317 Predicted E3 ubiquitin 99.4 4.8E-13 1E-17 119.2 3.9 58 23-89 235-292 (293)
4 PF15227 zf-C3HC4_4: zinc fing 99.3 3.7E-12 8E-17 83.4 3.6 42 30-76 1-42 (42)
5 smart00504 Ubox Modified RING 99.2 1.6E-11 3.4E-16 85.9 4.9 56 27-91 1-56 (63)
6 KOG0320 Predicted E3 ubiquitin 99.1 2.5E-11 5.5E-16 101.6 3.6 57 24-89 128-186 (187)
7 KOG2164 Predicted E3 ubiquitin 99.1 2.9E-11 6.4E-16 114.9 4.4 79 6-93 170-248 (513)
8 TIGR00599 rad18 DNA repair pro 99.1 3.2E-11 7E-16 113.2 3.2 70 9-89 10-79 (397)
9 PF13923 zf-C3HC4_2: Zinc fing 99.1 4.7E-11 1E-15 76.6 2.6 38 30-76 1-39 (39)
10 PF13920 zf-C3HC4_3: Zinc fing 99.0 1.6E-10 3.5E-15 77.9 3.0 47 26-81 1-48 (50)
11 PF13639 zf-RING_2: Ring finge 99.0 1.3E-10 2.7E-15 76.3 2.2 40 29-77 2-44 (44)
12 PF04564 U-box: U-box domain; 99.0 2E-10 4.3E-15 83.6 3.1 58 26-91 3-60 (73)
13 PHA02929 N1R/p28-like protein; 99.0 4.4E-10 9.6E-15 99.1 4.8 48 25-81 172-227 (238)
14 PF00097 zf-C3HC4: Zinc finger 98.9 1.3E-09 2.8E-14 70.2 3.4 40 30-76 1-41 (41)
15 COG5574 PEX10 RING-finger-cont 98.9 7.7E-10 1.7E-14 97.8 2.8 54 25-86 213-267 (271)
16 cd00162 RING RING-finger (Real 98.8 2.9E-09 6.3E-14 68.2 3.8 44 29-80 1-45 (45)
17 KOG0287 Postreplication repair 98.8 3.8E-10 8.2E-15 102.8 -1.1 59 23-90 19-77 (442)
18 PHA02926 zinc finger-like prot 98.8 4.4E-09 9.5E-14 91.2 3.7 55 24-81 167-230 (242)
19 KOG4628 Predicted E3 ubiquitin 98.7 2.7E-08 5.9E-13 91.8 7.6 47 28-82 230-279 (348)
20 smart00184 RING Ring finger. E 98.7 1.3E-08 2.7E-13 63.0 3.6 39 30-76 1-39 (39)
21 PF13445 zf-RING_UBOX: RING-ty 98.7 8.3E-09 1.8E-13 67.9 2.7 39 30-74 1-43 (43)
22 COG5432 RAD18 RING-finger-cont 98.7 4E-09 8.8E-14 94.5 0.7 71 9-90 9-79 (391)
23 COG5243 HRD1 HRD ubiquitin lig 98.7 5.6E-08 1.2E-12 89.7 7.7 56 17-81 277-345 (491)
24 PF14634 zf-RING_5: zinc-RING 98.6 2.6E-08 5.6E-13 65.5 2.6 41 29-78 1-44 (44)
25 PF14835 zf-RING_6: zf-RING of 98.6 2.9E-09 6.4E-14 75.3 -2.6 54 25-89 5-59 (65)
26 PF12678 zf-rbx1: RING-H2 zinc 98.5 5.6E-08 1.2E-12 70.8 3.2 41 28-77 20-73 (73)
27 KOG0978 E3 ubiquitin ligase in 98.5 1.9E-08 4E-13 99.8 -0.4 59 23-89 639-697 (698)
28 KOG2177 Predicted E3 ubiquitin 98.5 3.5E-08 7.5E-13 85.3 1.0 47 22-77 8-54 (386)
29 COG5540 RING-finger-containing 98.4 2.2E-07 4.8E-12 83.9 3.0 48 26-81 322-372 (374)
30 PF12861 zf-Apc11: Anaphase-pr 98.3 3.6E-07 7.9E-12 68.4 3.3 50 27-82 21-83 (85)
31 KOG0802 E3 ubiquitin ligase [P 98.3 1.8E-07 4E-12 91.5 1.4 51 25-84 289-344 (543)
32 TIGR00570 cdk7 CDK-activating 98.1 2.4E-06 5.3E-11 77.9 3.8 51 27-85 3-58 (309)
33 KOG4159 Predicted E3 ubiquitin 98.0 3.5E-06 7.6E-11 79.5 2.9 50 23-81 80-129 (398)
34 COG5152 Uncharacterized conser 98.0 2.3E-06 4.9E-11 73.3 1.3 63 9-80 176-240 (259)
35 KOG1785 Tyrosine kinase negati 97.9 6.3E-06 1.4E-10 77.0 3.1 53 28-87 370-422 (563)
36 KOG0824 Predicted E3 ubiquitin 97.9 6.1E-06 1.3E-10 74.5 1.7 49 27-83 7-55 (324)
37 KOG0311 Predicted E3 ubiquitin 97.8 1.4E-06 3.1E-11 80.0 -2.4 51 23-81 39-90 (381)
38 KOG4172 Predicted E3 ubiquitin 97.8 6.2E-06 1.3E-10 56.7 0.2 49 25-81 5-54 (62)
39 KOG1813 Predicted E3 ubiquitin 97.8 6.8E-06 1.5E-10 74.1 0.4 66 7-81 219-286 (313)
40 KOG3039 Uncharacterized conser 97.6 2E-05 4.4E-10 69.5 1.6 83 3-94 195-283 (303)
41 PF11789 zf-Nse: Zinc-finger o 97.6 2.6E-05 5.6E-10 54.3 1.6 44 25-75 9-53 (57)
42 COG5222 Uncharacterized conser 97.6 5.3E-05 1.1E-09 68.6 3.1 53 28-88 275-329 (427)
43 PF11793 FANCL_C: FANCL C-term 97.5 2.9E-05 6.2E-10 56.2 0.8 56 27-82 2-67 (70)
44 KOG1002 Nucleotide excision re 97.5 4.7E-05 1E-09 73.4 2.4 58 22-83 531-588 (791)
45 KOG0297 TNF receptor-associate 97.5 4.3E-05 9.3E-10 72.2 2.1 56 23-87 17-73 (391)
46 KOG4265 Predicted E3 ubiquitin 97.5 7.9E-05 1.7E-09 68.8 3.2 48 25-81 288-336 (349)
47 KOG0804 Cytoplasmic Zn-finger 97.4 4.3E-05 9.4E-10 72.3 1.0 47 24-81 172-222 (493)
48 KOG2879 Predicted E3 ubiquitin 97.4 0.00013 2.7E-09 65.4 3.8 52 23-81 235-287 (298)
49 KOG0828 Predicted E3 ubiquitin 97.4 7.9E-05 1.7E-09 71.4 2.3 50 24-81 568-634 (636)
50 KOG1645 RING-finger-containing 97.4 8E-05 1.7E-09 69.9 1.7 61 26-93 3-68 (463)
51 KOG2660 Locus-specific chromos 97.3 6.1E-05 1.3E-09 68.9 0.5 51 23-82 11-62 (331)
52 smart00744 RINGv The RING-vari 97.3 0.00029 6.4E-09 47.4 3.4 42 29-77 1-49 (49)
53 KOG4692 Predicted E3 ubiquitin 97.2 0.00026 5.6E-09 65.5 3.5 51 23-82 418-468 (489)
54 KOG1039 Predicted E3 ubiquitin 97.1 0.00032 7E-09 65.2 2.8 55 25-81 159-221 (344)
55 COG5219 Uncharacterized conser 97.0 0.00021 4.6E-09 72.9 1.2 52 23-81 1465-1523(1525)
56 KOG1734 Predicted RING-contain 97.0 0.00017 3.6E-09 64.6 -0.0 57 25-88 222-288 (328)
57 COG5194 APC11 Component of SCF 96.9 0.00076 1.6E-08 49.9 2.7 29 44-81 53-81 (88)
58 PF04641 Rtf2: Rtf2 RING-finge 96.9 0.00054 1.2E-08 61.3 2.2 61 23-93 109-173 (260)
59 KOG4275 Predicted E3 ubiquitin 96.8 0.00015 3.3E-09 65.5 -1.7 42 27-81 300-342 (350)
60 KOG1571 Predicted E3 ubiquitin 96.8 0.00064 1.4E-08 62.9 1.8 47 23-81 301-347 (355)
61 KOG0826 Predicted E3 ubiquitin 96.7 0.00081 1.7E-08 61.7 2.2 57 25-90 298-355 (357)
62 PF05290 Baculo_IE-1: Baculovi 96.7 0.0014 3.1E-08 52.9 3.4 52 26-83 79-134 (140)
63 PF14447 Prok-RING_4: Prokaryo 96.7 0.00089 1.9E-08 46.1 1.5 48 26-84 6-53 (55)
64 KOG0825 PHD Zn-finger protein 96.6 0.00038 8.2E-09 69.9 -0.8 52 26-86 122-176 (1134)
65 KOG0827 Predicted E3 ubiquitin 96.5 0.0014 3.1E-08 61.3 2.0 48 28-81 5-56 (465)
66 KOG1493 Anaphase-promoting com 96.4 0.00091 2E-08 49.1 0.3 32 44-81 50-81 (84)
67 PF07800 DUF1644: Protein of u 96.2 0.0074 1.6E-07 50.2 4.6 61 26-86 1-96 (162)
68 KOG1814 Predicted E3 ubiquitin 96.2 0.0027 5.9E-08 59.8 2.1 65 13-78 170-237 (445)
69 KOG1001 Helicase-like transcri 96.0 0.0017 3.8E-08 65.3 -0.2 52 28-87 455-506 (674)
70 KOG4367 Predicted Zn-finger pr 95.7 0.021 4.5E-07 54.6 5.9 36 25-60 2-37 (699)
71 KOG4739 Uncharacterized protei 95.4 0.0044 9.5E-08 54.6 0.3 53 28-91 4-58 (233)
72 KOG2930 SCF ubiquitin ligase, 95.2 0.013 2.9E-07 45.4 2.1 27 44-79 80-106 (114)
73 KOG2817 Predicted E3 ubiquitin 94.9 0.013 2.8E-07 55.1 1.8 70 9-84 311-388 (394)
74 PF05883 Baculo_RING: Baculovi 94.6 0.012 2.5E-07 47.8 0.5 33 27-59 26-67 (134)
75 COG5236 Uncharacterized conser 94.5 0.036 7.8E-07 51.6 3.5 52 22-80 56-107 (493)
76 KOG3970 Predicted E3 ubiquitin 94.4 0.038 8.1E-07 48.6 3.3 54 28-82 51-106 (299)
77 KOG3002 Zn finger protein [Gen 94.3 0.031 6.7E-07 51.2 2.6 46 24-81 45-91 (299)
78 KOG4185 Predicted E3 ubiquitin 94.2 0.028 6.1E-07 50.7 2.2 46 27-80 3-54 (296)
79 PF14570 zf-RING_4: RING/Ubox 94.0 0.026 5.7E-07 37.9 1.1 43 30-80 1-47 (48)
80 KOG3161 Predicted E3 ubiquitin 93.9 0.024 5.1E-07 56.4 1.1 43 25-79 9-55 (861)
81 KOG1941 Acetylcholine receptor 93.6 0.026 5.7E-07 53.2 0.8 47 26-79 364-414 (518)
82 KOG4445 Uncharacterized conser 93.3 0.038 8.2E-07 50.5 1.3 60 23-82 111-187 (368)
83 PHA03096 p28-like protein; Pro 93.2 0.053 1.1E-06 49.4 2.1 50 28-80 179-236 (284)
84 PF02891 zf-MIZ: MIZ/SP-RING z 92.5 0.084 1.8E-06 35.6 1.8 46 28-78 3-49 (50)
85 PF10367 Vps39_2: Vacuolar sor 92.1 0.067 1.4E-06 40.5 1.1 32 24-55 75-108 (109)
86 KOG3800 Predicted E3 ubiquitin 91.9 0.12 2.6E-06 47.0 2.6 46 29-82 2-52 (300)
87 PHA02825 LAP/PHD finger-like p 91.7 0.22 4.7E-06 41.6 3.7 50 24-81 5-59 (162)
88 KOG4362 Transcriptional regula 91.6 0.037 8.1E-07 55.5 -1.0 52 25-82 19-70 (684)
89 KOG2114 Vacuolar assembly/sort 91.4 0.16 3.6E-06 52.0 3.2 43 26-80 839-882 (933)
90 KOG0298 DEAD box-containing he 91.3 0.026 5.5E-07 59.9 -2.7 48 23-79 1149-1197(1394)
91 KOG3039 Uncharacterized conser 91.1 0.18 4E-06 44.9 2.9 40 22-61 38-77 (303)
92 KOG3268 Predicted E3 ubiquitin 90.9 0.19 4.1E-06 42.8 2.7 58 25-82 163-229 (234)
93 PF12906 RINGv: RING-variant d 90.5 0.22 4.7E-06 33.1 2.1 40 30-76 1-47 (47)
94 COG5175 MOT2 Transcriptional r 90.4 0.2 4.3E-06 46.6 2.6 51 27-85 14-68 (480)
95 KOG1952 Transcription factor N 89.6 0.24 5.2E-06 50.8 2.6 55 25-81 189-247 (950)
96 PF08746 zf-RING-like: RING-li 89.0 0.41 8.8E-06 31.2 2.5 40 30-76 1-43 (43)
97 COG5109 Uncharacterized conser 88.9 0.16 3.5E-06 46.8 0.7 71 9-85 313-391 (396)
98 PHA02862 5L protein; Provision 88.3 0.45 9.8E-06 39.2 2.9 46 28-81 3-53 (156)
99 KOG1428 Inhibitor of type V ad 86.5 0.51 1.1E-05 51.4 2.7 58 25-82 3484-3545(3738)
100 KOG1940 Zn-finger protein [Gen 86.3 0.38 8.3E-06 43.6 1.6 43 27-78 158-204 (276)
101 KOG3113 Uncharacterized conser 86.1 0.75 1.6E-05 41.2 3.2 56 25-91 109-168 (293)
102 PF10272 Tmpp129: Putative tra 86.0 0.6 1.3E-05 43.9 2.8 40 46-85 312-355 (358)
103 KOG3053 Uncharacterized conser 85.8 0.59 1.3E-05 42.0 2.4 59 21-80 14-81 (293)
104 KOG1815 Predicted E3 ubiquitin 84.7 1.1 2.5E-05 42.9 4.1 63 25-88 68-133 (444)
105 KOG2932 E3 ubiquitin ligase in 84.7 0.36 7.8E-06 44.5 0.6 41 30-81 93-134 (389)
106 KOG1812 Predicted E3 ubiquitin 84.4 0.96 2.1E-05 42.9 3.4 54 26-82 145-204 (384)
107 KOG3579 Predicted E3 ubiquitin 83.5 0.83 1.8E-05 41.6 2.4 39 26-64 267-309 (352)
108 KOG2034 Vacuolar sorting prote 80.3 0.9 2E-05 47.0 1.6 36 24-59 814-851 (911)
109 KOG1100 Predicted E3 ubiquitin 80.2 0.7 1.5E-05 40.2 0.7 39 30-81 161-200 (207)
110 KOG2169 Zn-finger transcriptio 77.1 1.2 2.6E-05 44.9 1.3 58 23-85 302-360 (636)
111 PF03854 zf-P11: P-11 zinc fin 75.9 0.68 1.5E-05 31.1 -0.5 42 29-81 4-46 (50)
112 COG5183 SSM4 Protein involved 75.8 2.6 5.6E-05 43.5 3.3 55 24-85 9-70 (1175)
113 KOG3899 Uncharacterized conser 74.4 1.6 3.5E-05 40.0 1.3 42 45-86 325-370 (381)
114 KOG0825 PHD Zn-finger protein 72.8 2.2 4.8E-05 43.8 2.0 52 26-80 95-153 (1134)
115 PF10497 zf-4CXXC_R1: Zinc-fin 72.0 4 8.6E-05 31.7 2.8 34 46-79 37-70 (105)
116 PF04272 Phospholamban: Phosph 70.7 6.8 0.00015 26.0 3.3 13 227-239 32-44 (52)
117 CHL00038 psbL photosystem II p 68.8 4.2 9.2E-05 25.7 1.9 17 221-237 12-28 (38)
118 COG3813 Uncharacterized protei 66.3 4.1 8.9E-05 29.8 1.7 32 46-88 28-59 (84)
119 KOG0827 Predicted E3 ubiquitin 66.1 0.69 1.5E-05 43.8 -2.9 47 28-83 197-247 (465)
120 COG5220 TFB3 Cdk activating ki 62.2 2 4.3E-05 38.4 -0.7 47 26-80 9-63 (314)
121 KOG1812 Predicted E3 ubiquitin 61.2 1.6 3.5E-05 41.3 -1.5 34 27-60 306-344 (384)
122 PF06844 DUF1244: Protein of u 59.1 6.1 0.00013 28.3 1.5 14 48-61 11-24 (68)
123 PF14569 zf-UDP: Zinc-binding 56.4 13 0.00029 27.5 2.9 48 26-81 8-62 (80)
124 PRK00753 psbL photosystem II r 54.1 11 0.00024 23.9 1.9 17 221-237 13-29 (39)
125 PF06906 DUF1272: Protein of u 53.1 13 0.00028 25.8 2.2 42 29-81 7-52 (57)
126 PF14446 Prok-RING_1: Prokaryo 52.9 14 0.00029 25.5 2.3 29 27-55 5-37 (54)
127 PF03908 Sec20: Sec20; InterP 52.4 23 0.0005 26.4 3.8 27 211-238 62-88 (92)
128 KOG4718 Non-SMC (structural ma 51.3 8 0.00017 33.9 1.2 43 26-77 180-223 (235)
129 PF15616 TerY-C: TerY-C metal 51.2 6 0.00013 32.1 0.5 47 21-82 71-117 (131)
130 KOG2231 Predicted E3 ubiquitin 50.9 13 0.00029 37.8 2.9 51 29-82 2-53 (669)
131 KOG4185 Predicted E3 ubiquitin 50.5 3.1 6.7E-05 37.4 -1.5 45 27-79 207-265 (296)
132 KOG2068 MOT2 transcription fac 50.3 13 0.00027 34.6 2.4 45 27-80 249-297 (327)
133 KOG1609 Protein involved in mR 50.2 9.5 0.00021 34.0 1.6 49 27-82 78-135 (323)
134 PF10571 UPF0547: Uncharacteri 49.3 8.9 0.00019 22.3 0.9 8 30-37 3-10 (26)
135 TIGR01294 P_lamban phospholamb 49.0 30 0.00066 23.0 3.4 11 229-239 34-44 (52)
136 PF04216 FdhE: Protein involve 48.7 4.8 0.0001 36.4 -0.5 45 26-79 171-220 (290)
137 PRK03564 formate dehydrogenase 48.0 7 0.00015 36.1 0.4 45 25-78 185-234 (309)
138 KOG0309 Conserved WD40 repeat- 47.9 11 0.00025 38.8 1.9 34 28-61 1029-1064(1081)
139 TIGR01562 FdhE formate dehydro 47.2 7.5 0.00016 35.8 0.5 45 26-79 183-233 (305)
140 KOG0289 mRNA splicing factor [ 46.4 30 0.00064 33.6 4.3 55 29-92 2-57 (506)
141 PF07191 zinc-ribbons_6: zinc- 46.2 0.78 1.7E-05 33.2 -4.8 41 27-81 1-41 (70)
142 KOG3623 Homeobox transcription 46.0 57 0.0012 33.8 6.4 14 69-82 308-321 (1007)
143 KOG1815 Predicted E3 ubiquitin 45.9 21 0.00046 34.3 3.4 46 38-83 177-239 (444)
144 KOG0802 E3 ubiquitin ligase [P 45.6 8.5 0.00018 38.0 0.6 47 24-83 476-522 (543)
145 PRK15178 Vi polysaccharide exp 45.5 23 0.0005 34.3 3.5 27 212-238 71-97 (434)
146 KOG2979 Protein involved in DN 42.7 12 0.00026 33.7 1.0 45 27-78 176-221 (262)
147 KOG3799 Rab3 effector RIM1 and 42.2 21 0.00046 29.3 2.3 51 24-79 62-116 (169)
148 PF01363 FYVE: FYVE zinc finge 41.8 6.3 0.00014 27.5 -0.7 32 26-57 8-43 (69)
149 PF07975 C1_4: TFIIH C1-like d 40.6 21 0.00046 24.2 1.8 25 44-77 26-50 (51)
150 PF06716 DUF1201: Protein of u 39.8 19 0.00041 24.1 1.4 12 227-238 14-25 (54)
151 smart00647 IBR In Between Ring 39.2 5 0.00011 27.1 -1.5 15 44-58 45-59 (64)
152 PF04710 Pellino: Pellino; In 37.1 11 0.00024 35.9 0.0 50 26-81 276-339 (416)
153 smart00064 FYVE Protein presen 37.0 29 0.00062 24.0 2.1 33 27-59 10-46 (68)
154 PF04710 Pellino: Pellino; In 36.8 11 0.00025 35.8 0.0 56 26-81 327-401 (416)
155 KOG3842 Adaptor protein Pellin 36.1 47 0.001 31.0 3.8 59 23-81 337-414 (429)
156 PF10215 Ost4: Oligosaccaryltr 35.9 32 0.0007 21.5 1.9 21 219-239 4-24 (35)
157 PLN02189 cellulose synthase 35.1 28 0.00061 37.2 2.5 47 27-81 34-87 (1040)
158 PLN02436 cellulose synthase A 34.9 28 0.00061 37.3 2.5 47 27-81 36-89 (1094)
159 COG4098 comFA Superfamily II D 34.9 22 0.00048 33.8 1.5 32 24-55 36-68 (441)
160 COG3492 Uncharacterized protei 34.5 21 0.00046 27.3 1.1 14 48-61 42-55 (104)
161 PF02419 PsbL: PsbL protein; 34.3 19 0.00042 22.7 0.7 17 221-237 11-27 (37)
162 smart00132 LIM Zinc-binding do 33.3 37 0.0008 20.0 1.9 25 29-53 1-27 (39)
163 PF05399 EVI2A: Ectropic viral 33.2 27 0.00059 30.6 1.7 16 225-240 133-148 (227)
164 PF10146 zf-C4H2: Zinc finger- 33.1 32 0.00069 30.4 2.2 23 50-81 197-219 (230)
165 KOG0314 Predicted E3 ubiquitin 32.4 9.7 0.00021 36.9 -1.3 38 22-59 214-254 (448)
166 KOG1814 Predicted E3 ubiquitin 31.7 26 0.00057 33.6 1.5 32 25-56 366-403 (445)
167 PF12132 DUF3587: Protein of u 31.0 33 0.00072 29.7 1.9 24 36-59 150-177 (199)
168 PF08525 OapA_N: Opacity-assoc 30.4 70 0.0015 19.1 2.7 18 222-239 9-26 (30)
169 PLN02638 cellulose synthase A 28.7 43 0.00093 36.0 2.6 47 27-81 17-70 (1079)
170 KOG4451 Uncharacterized conser 27.9 40 0.00087 30.0 1.9 22 50-80 252-273 (286)
171 cd00065 FYVE FYVE domain; Zinc 27.5 41 0.00088 22.2 1.5 32 28-59 3-38 (57)
172 KOG4642 Chaperone-dependent E3 27.4 59 0.0013 29.4 2.9 59 25-91 209-267 (284)
173 PLN02195 cellulose synthase A 27.2 68 0.0015 34.2 3.7 48 26-81 5-59 (977)
174 PF10235 Cript: Microtubule-as 27.2 34 0.00073 26.0 1.1 37 27-81 44-80 (90)
175 KOG1701 Focal adhesion adaptor 26.6 43 0.00092 32.4 2.0 45 26-81 359-405 (468)
176 PF15012 DUF4519: Domain of un 25.9 56 0.0012 22.6 1.9 30 210-239 17-47 (56)
177 PHA02849 putative transmembran 25.8 52 0.0011 24.3 1.9 16 224-239 19-34 (82)
178 TIGR00622 ssl1 transcription f 25.5 45 0.00097 26.3 1.6 41 28-77 56-110 (112)
179 PLN02915 cellulose synthase A 25.1 53 0.0011 35.2 2.5 48 26-81 14-68 (1044)
180 COG0068 HypF Hydrogenase matur 24.8 32 0.00068 35.4 0.8 54 25-79 99-182 (750)
181 PF02318 FYVE_2: FYVE-type zin 24.3 70 0.0015 24.9 2.5 45 26-78 53-102 (118)
182 COG5242 TFB4 RNA polymerase II 24.2 35 0.00076 30.4 0.9 11 71-81 275-285 (296)
183 KOG0824 Predicted E3 ubiquitin 24.1 28 0.0006 32.2 0.2 48 25-81 103-151 (324)
184 PF04423 Rad50_zn_hook: Rad50 23.8 17 0.00037 24.3 -0.9 13 71-83 21-33 (54)
185 PF05393 Hum_adeno_E3A: Human 23.6 64 0.0014 24.5 2.0 13 225-237 35-47 (94)
186 KOG0269 WD40 repeat-containing 23.6 78 0.0017 32.8 3.2 33 29-61 781-815 (839)
187 KOG2807 RNA polymerase II tran 23.3 58 0.0013 30.5 2.1 42 27-77 330-374 (378)
188 PLN02400 cellulose synthase 23.1 45 0.00097 35.9 1.5 47 27-81 36-89 (1085)
189 PRK10299 PhoPQ regulatory prot 22.5 53 0.0012 21.9 1.3 14 226-239 6-19 (47)
190 PHA02975 hypothetical protein; 22.5 63 0.0014 23.3 1.7 20 220-239 40-59 (69)
191 PF01485 IBR: IBR domain; Int 22.3 8.9 0.00019 25.8 -2.7 30 28-57 19-58 (64)
192 PHA02657 hypothetical protein; 21.3 1E+02 0.0022 23.3 2.6 19 221-239 26-44 (95)
193 PF00412 LIM: LIM domain; Int 21.2 93 0.002 20.2 2.4 32 25-56 24-56 (58)
194 KOG2113 Predicted RNA binding 21.2 72 0.0016 29.8 2.3 45 25-80 341-386 (394)
195 PHA02844 putative transmembran 21.1 72 0.0016 23.4 1.8 14 225-238 49-62 (75)
196 COG5574 PEX10 RING-finger-cont 20.9 85 0.0018 28.5 2.6 37 23-59 91-132 (271)
197 KOG3005 GIY-YIG type nuclease 20.6 41 0.00089 30.5 0.6 60 28-87 183-249 (276)
198 smart00249 PHD PHD zinc finger 20.6 43 0.00093 20.4 0.5 26 30-55 2-30 (47)
199 smart00734 ZnF_Rad18 Rad18-lik 20.5 40 0.00087 19.4 0.3 12 71-82 2-13 (26)
200 PHA02898 virion envelope prote 20.4 1E+02 0.0022 23.4 2.5 22 219-240 44-65 (92)
No 1
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=100.00 E-value=2.3e-49 Score=335.07 Aligned_cols=172 Identities=47% Similarity=0.936 Sum_probs=139.3
Q ss_pred CCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhcccc-------CCCCCCCCCCccCCCCcCcceeccCCCCCC
Q 026323 23 NYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASL-------ASDEHPQCPVCKADISHTTMVPLYGRGQTP 95 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~-------~~~~~~~CPvCr~~v~~~~l~p~~~~g~~~ 95 (240)
+..++++|+||++.+++|++++|||+|||.||.+|+...+.+. ...+...||+||..++..+++|+|++|..
T Consensus 14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygrg~~- 92 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRGQK- 92 (193)
T ss_pred cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeeccCCC-
Confidence 4456799999999999999999999999999999997543221 12345799999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCcccccc
Q 026323 96 TESEPEGKVSHRGTVIPPRPPAFGNQALLYPTSNTGQQLPYRNPYQSQNYDPHGQHSYGGFEGNSPSPLLNLGGTALSGF 175 (240)
Q Consensus 96 ~~~~~~~k~~~~~~~iP~RP~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (240)
+...+..+|+||.+++.+. ++..+++.++ ++|+|+ + ++
T Consensus 93 --------~~~~~~~iP~rp~~~~~~~-----~~~~~~~~~~---~~~~~~-------------------------~-~~ 130 (193)
T PLN03208 93 --------APQSGSNVPSRPSGPVYDL-----RGVGQRLGEG---ESQRYM-------------------------Y-RM 130 (193)
T ss_pred --------CCCCCCCCCcCCCCCccCC-----CCcccccccc---ccceee-------------------------e-cc
Confidence 2344567999998876552 2222222222 112221 1 67
Q ss_pred cCcccccccchhhhhccCCCC-CCCCCCCCCCCCchhhhHhHHHHHhhhHHHHHHHHHHHHHHhhC
Q 026323 176 QHPVVGMFGEMVYASVFGNSE-SLYTYPNSYHSNPRLRRHEMQAVKSLNRISIFLFCCFLLCLIVF 240 (240)
Q Consensus 176 ~~~~~g~f~~~~~~~~~g~~~-~~~~~~~~~~~~~r~~~~~~q~~~~l~~~~~f~~~~~~l~l~~f 240 (240)
++|++||||||||+|+||++. |+|+|||+ +||||||+||+|||||||+|||||||+||||||
T Consensus 131 ~~p~~g~~~~~~~~r~fg~~~~~~~~~~~~---~~r~r~~~~q~~~sl~r~~~f~~c~~~~~~~~f 193 (193)
T PLN03208 131 PDPVMGVVCEMVYRRLFGESSSNMAPYRDM---NVRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193 (193)
T ss_pred CCccccchhhhhhhhhhCCccccccccccC---chHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhC
Confidence 889999999999999999999 99999985 899999999999999999999999999999998
No 2
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-37 Score=266.45 Aligned_cols=185 Identities=39% Similarity=0.765 Sum_probs=135.4
Q ss_pred CCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceeccCCCCCCCCCCCCCC
Q 026323 24 YNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGRGQTPTESEPEGK 103 (240)
Q Consensus 24 ~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~~~g~~~~~~~~~~k 103 (240)
....|+|+||+|..+|||+|.|||+|||+||++||+.+. ....|||||..++.++++|+|++|+.. ....+|
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~------~~~~cPVCK~~Vs~~~vvPlYGrG~~~--~~~~~~ 115 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRP------NSKECPVCKAEVSIDTVVPLYGRGSKK--PSDPRK 115 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcC------CCeeCCccccccccceEEeeeccCCCC--CCCccc
Confidence 457899999999999999999999999999999999875 448899999999999999999999962 222223
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCcccccccCcccccc
Q 026323 104 VSHRGTVIPPRPPAFGNQALLYPTSNTGQQLPYRNPYQSQNYDPHGQHSYGGFEGNSPSPLLNLGGTALSGFQHPVVGMF 183 (240)
Q Consensus 104 ~~~~~~~iP~RP~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~f 183 (240)
+. +|+||+++|.++.+...+.... .++... +...++ +....-|.+.|...+ -++++|||
T Consensus 116 ~~-----vP~RP~~~R~e~~~p~~~~~~~----------~g~r~~--g~~~~~-~~~~~f~~s~~i~~~---~~~v~~~~ 174 (230)
T KOG0823|consen 116 KD-----VPPRPAGQRYESKRPTPQNRGN----------HGFRFF--GFRLGE-ESSNRFMYSFGIGLF---GDPVMGLF 174 (230)
T ss_pred cc-----CCCCCCCccccccCCCCccccc----------cccccc--cccccc-cCCcceeEEeecccC---CCceeeec
Confidence 22 9999999998877544332110 111100 000100 000112233333222 16889999
Q ss_pred cchhhhhccCCCC-CCCCCCCCCC-CCchhhhHhHHHHHhhhHHHHHHHHHHHHHHhhC
Q 026323 184 GEMVYASVFGNSE-SLYTYPNSYH-SNPRLRRHEMQAVKSLNRISIFLFCCFLLCLIVF 240 (240)
Q Consensus 184 ~~~~~~~~~g~~~-~~~~~~~~~~-~~~r~~~~~~q~~~~l~~~~~f~~~~~~l~l~~f 240 (240)
++++++++||+.+ .+ + .+++ ..+|.++++||.+++|+|+.+|++|++++||+++
T Consensus 175 p~~~~~~lf~~~~~~~-~--~~~~~~~~~~~~r~~q~e~~ls~~f~~~~~~~~~~l~~~ 230 (230)
T KOG0823|consen 175 PFGLYTRLFGTDETFP-A--DTPRPSPARPLGRQMQRENSLSRVFLFLACFFVSWLLVI 230 (230)
T ss_pred cccceeeecCCCCCcc-c--cCCCCCCCccccccchhhcccccchhhhhhhheeeeeeC
Confidence 9999999999888 44 3 3333 4578888999999999999999999999999864
No 3
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=4.8e-13 Score=119.20 Aligned_cols=58 Identities=29% Similarity=0.914 Sum_probs=51.2
Q ss_pred CCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceecc
Q 026323 23 NYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLY 89 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~ 89 (240)
..+....|.+|+|...+|..|+|||+|||.||..|+... ..||+||..+++.+++-++
T Consensus 235 i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek---------~eCPlCR~~~~pskvi~Lr 292 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEK---------AECPLCREKFQPSKVICLR 292 (293)
T ss_pred CCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccc---------cCCCcccccCCCcceeeec
Confidence 345678999999999999999999999999999999955 6699999999998877553
No 4
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.27 E-value=3.7e-12 Score=83.39 Aligned_cols=42 Identities=40% Similarity=0.940 Sum_probs=31.9
Q ss_pred cccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCc
Q 026323 30 CNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVC 76 (240)
Q Consensus 30 C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvC 76 (240)
|+||++++++||.++|||+||..||.+|++... .....||+|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~-----~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPS-----GSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSS-----SST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccC-----CcCCCCcCC
Confidence 899999999999999999999999999998432 222789987
No 5
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.22 E-value=1.6e-11 Score=85.89 Aligned_cols=56 Identities=30% Similarity=0.519 Sum_probs=50.0
Q ss_pred ccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceeccCC
Q 026323 27 CFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGR 91 (240)
Q Consensus 27 ~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~~~ 91 (240)
++.|+||.+.+.+||+++|||+||..||.+|++.+ ..||+|+..+..++++++...
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~---------~~cP~~~~~~~~~~l~~~~~l 56 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSH---------GTDPVTGQPLTHEDLIPNLAL 56 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHC---------CCCCCCcCCCChhhceeCHHH
Confidence 36799999999999999999999999999999842 789999999988888887543
No 6
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.5e-11 Score=101.58 Aligned_cols=57 Identities=39% Similarity=0.937 Sum_probs=49.4
Q ss_pred CCCccccccccccCCC--cEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceecc
Q 026323 24 YNGCFDCNICLDFAYD--PVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLY 89 (240)
Q Consensus 24 ~~~~~~C~ICle~~~~--pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~ 89 (240)
-++.+.|+||++.+.+ ||.|+|||+||..||+..++.. .+||+|++.+..+.+.++|
T Consensus 128 ~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~---------~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT---------NKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred cccccCCCceecchhhccccccccchhHHHHHHHHHHHhC---------CCCCCcccccchhhheecc
Confidence 3466999999999865 5669999999999999999854 8999999999988888776
No 7
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.9e-11 Score=114.87 Aligned_cols=79 Identities=28% Similarity=0.700 Sum_probs=65.8
Q ss_pred hhHHHHHHHhhhhcCCCCCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcc
Q 026323 6 YFAREWKSIASAATGSENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTM 85 (240)
Q Consensus 6 ~~~~~~ks~~~~~~~~~~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l 85 (240)
....+|+.+..+-..+ +..||||++...-|+.|.|||+||++||..++... .......||+|+..+..+++
T Consensus 170 D~p~~~e~i~qv~~~t-----~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s----~~~~~~~CPiC~s~I~~kdl 240 (513)
T KOG2164|consen 170 DAPVDWEDIFQVYGST-----DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYS----AIKGPCSCPICRSTITLKDL 240 (513)
T ss_pred ccccchHHhhhhhcCc-----CCcCCcccCCCCcccccccCceeeHHHHHHHHhhh----cccCCccCCchhhhccccce
Confidence 3446688877765533 67899999999999999999999999999999854 24567899999999999999
Q ss_pred eeccCCCC
Q 026323 86 VPLYGRGQ 93 (240)
Q Consensus 86 ~p~~~~g~ 93 (240)
.+.+.+..
T Consensus 241 ~pv~~e~~ 248 (513)
T KOG2164|consen 241 LPVFIEDD 248 (513)
T ss_pred eeeeeccc
Confidence 99887765
No 8
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.11 E-value=3.2e-11 Score=113.17 Aligned_cols=70 Identities=30% Similarity=0.732 Sum_probs=57.5
Q ss_pred HHHHHHhhhhcCCCCCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceec
Q 026323 9 REWKSIASAATGSENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPL 88 (240)
Q Consensus 9 ~~~ks~~~~~~~~~~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~ 88 (240)
-+|...+.... +.++..+.|+||++.+.+|++++|||.||..||..|+... ..||+|+..+...++..+
T Consensus 10 tDw~~t~~~~l--~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~---------~~CP~Cr~~~~~~~Lr~N 78 (397)
T TIGR00599 10 SDWLTTPIPSL--YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ---------PKCPLCRAEDQESKLRSN 78 (397)
T ss_pred hhhccCCcccc--cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC---------CCCCCCCCccccccCccc
Confidence 56777664444 5677889999999999999999999999999999999842 689999998876555544
Q ss_pred c
Q 026323 89 Y 89 (240)
Q Consensus 89 ~ 89 (240)
+
T Consensus 79 ~ 79 (397)
T TIGR00599 79 W 79 (397)
T ss_pred h
Confidence 3
No 9
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.10 E-value=4.7e-11 Score=76.58 Aligned_cols=38 Identities=61% Similarity=1.300 Sum_probs=32.8
Q ss_pred cccccccCCCc-EEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCc
Q 026323 30 CNICLDFAYDP-VVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVC 76 (240)
Q Consensus 30 C~ICle~~~~p-v~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvC 76 (240)
|+||++.+.+| ++++|||+||+.|+.+|++.+ .+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~---------~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKN---------PKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCT---------SB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCc---------CCCcCC
Confidence 89999999999 678999999999999999842 899987
No 10
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.03 E-value=1.6e-10 Score=77.92 Aligned_cols=47 Identities=34% Similarity=0.851 Sum_probs=40.3
Q ss_pred CccccccccccCCCcEEcCCCCc-ccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 26 GCFDCNICLDFAYDPVVTLCGHL-YCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 26 ~~~~C~ICle~~~~pv~t~CGH~-FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
++..|.||++...+.+.++|||. ||..|+.+|++.. ..||+||+.+.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~---------~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKRK---------KKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTT---------SBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcccC---------CCCCcCChhhc
Confidence 35789999999999999999999 9999999999833 89999999875
No 11
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.02 E-value=1.3e-10 Score=76.33 Aligned_cols=40 Identities=40% Similarity=0.999 Sum_probs=34.1
Q ss_pred ccccccccCC---CcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCcc
Q 026323 29 DCNICLDFAY---DPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCK 77 (240)
Q Consensus 29 ~C~ICle~~~---~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr 77 (240)
+|+||++.+. ..+.++|||.||..||.+|++.. .+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~---------~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN---------NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS---------SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC---------CcCCccC
Confidence 6999999984 45778999999999999999854 6999997
No 12
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.01 E-value=2e-10 Score=83.64 Aligned_cols=58 Identities=26% Similarity=0.468 Sum_probs=46.8
Q ss_pred CccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceeccCC
Q 026323 26 GCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGR 91 (240)
Q Consensus 26 ~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~~~ 91 (240)
+.+.|+|+.+++.+||++++||+|+..||.+|++.. ...||.|+..+..++++++...
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~--------~~~~P~t~~~l~~~~l~pn~~L 60 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQN--------GGTDPFTRQPLSESDLIPNRAL 60 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTT--------SSB-TTT-SB-SGGGSEE-HHH
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcC--------CCCCCCCCCcCCcccceECHHH
Confidence 578999999999999999999999999999999952 3899999999999999988643
No 13
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.98 E-value=4.4e-10 Score=99.07 Aligned_cols=48 Identities=31% Similarity=0.917 Sum_probs=40.3
Q ss_pred CCccccccccccCCCc--------EEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 25 NGCFDCNICLDFAYDP--------VVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 25 ~~~~~C~ICle~~~~p--------v~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
..+.+|+||++.+.++ ++++|||.||..||.+|++.+ .+||+||..+.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~---------~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEK---------NTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcC---------CCCCCCCCEee
Confidence 4568999999987653 556899999999999999843 79999998875
No 14
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.90 E-value=1.3e-09 Score=70.19 Aligned_cols=40 Identities=45% Similarity=1.145 Sum_probs=35.9
Q ss_pred cccccccCCCcE-EcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCc
Q 026323 30 CNICLDFAYDPV-VTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVC 76 (240)
Q Consensus 30 C~ICle~~~~pv-~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvC 76 (240)
|+||++.+.+++ +++|||.||..||.+|++.. +...||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~-------~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENS-------GSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHT-------SSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhc-------CCccCCcC
Confidence 899999999999 88999999999999999942 44789987
No 15
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=7.7e-10 Score=97.79 Aligned_cols=54 Identities=30% Similarity=0.832 Sum_probs=47.1
Q ss_pred CCccccccccccCCCcEEcCCCCcccHHHHHH-HHHhhccccCCCCCCCCCCccCCCCcCcce
Q 026323 25 NGCFDCNICLDFAYDPVVTLCGHLYCWPCIYK-WLHVQSASLASDEHPQCPVCKADISHTTMV 86 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~-wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~ 86 (240)
..++.|.||++....|..++|||+|||.||.. |-..+. ..||+||+.+..++++
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~--------~~CplCRak~~pk~vi 267 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKY--------EFCPLCRAKVYPKKVI 267 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhcc--------ccCchhhhhccchhhh
Confidence 45788999999999999999999999999999 877553 5699999998877763
No 16
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.85 E-value=2.9e-09 Score=68.17 Aligned_cols=44 Identities=48% Similarity=1.210 Sum_probs=37.0
Q ss_pred ccccccccCCCcEEcC-CCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCC
Q 026323 29 DCNICLDFAYDPVVTL-CGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADI 80 (240)
Q Consensus 29 ~C~ICle~~~~pv~t~-CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v 80 (240)
+|+||++.+.+++.+. |||.||..|+..|++.. ...||+|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~--------~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSG--------KNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhC--------cCCCCCCCCcC
Confidence 5999999997777665 99999999999999852 37899998753
No 17
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.83 E-value=3.8e-10 Score=102.75 Aligned_cols=59 Identities=29% Similarity=0.750 Sum_probs=52.0
Q ss_pred CCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceeccC
Q 026323 23 NYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYG 90 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~~ 90 (240)
.++..+.|-||.|++..|++|+|+|+||.-||..+|..+ ..||.|+..+.+.+++.++.
T Consensus 19 ~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~---------p~CP~C~~~~~Es~Lr~n~i 77 (442)
T KOG0287|consen 19 TLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYK---------PQCPTCCVTVTESDLRNNRI 77 (442)
T ss_pred hhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccC---------CCCCceecccchhhhhhhhH
Confidence 445678999999999999999999999999999999854 89999999999877776644
No 18
>PHA02926 zinc finger-like protein; Provisional
Probab=98.78 E-value=4.4e-09 Score=91.20 Aligned_cols=55 Identities=24% Similarity=0.814 Sum_probs=42.6
Q ss_pred CCCccccccccccCCC---------cEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 24 YNGCFDCNICLDFAYD---------PVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 24 ~~~~~~C~ICle~~~~---------pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
.+.+.+|+||+|...+ ++..+|+|.||..||..|.+.+. +.+....||+||..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~---~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRR---ETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhcc---ccCcCCcCCCCcceee
Confidence 4457889999998643 35569999999999999998532 2344578999998875
No 19
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=2.7e-08 Score=91.80 Aligned_cols=47 Identities=36% Similarity=0.733 Sum_probs=39.6
Q ss_pred cccccccccCCCc---EEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026323 28 FDCNICLDFAYDP---VVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 28 ~~C~ICle~~~~p---v~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
+.|.||+|.+++. ++++|.|.|+..||..||... ...||+||..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~--------r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT--------RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc--------CccCCCCCCcCCC
Confidence 6999999999765 568999999999999999843 2569999987643
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.72 E-value=1.3e-08 Score=62.95 Aligned_cols=39 Identities=51% Similarity=1.255 Sum_probs=34.6
Q ss_pred cccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCc
Q 026323 30 CNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVC 76 (240)
Q Consensus 30 C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvC 76 (240)
|+||++...+++.++|||.||..|+..|++.. ...||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~--------~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSG--------NNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhC--------cCCCCCC
Confidence 89999999999999999999999999999822 3779987
No 21
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.72 E-value=8.3e-09 Score=67.87 Aligned_cols=39 Identities=33% Similarity=0.858 Sum_probs=23.6
Q ss_pred cccccccCCC----cEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCC
Q 026323 30 CNICLDFAYD----PVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCP 74 (240)
Q Consensus 30 C~ICle~~~~----pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CP 74 (240)
|+||.| +.+ |++++|||+||..||.++++... .+..+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~-----~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSD-----RNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S------S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCC-----CCeeeCc
Confidence 899999 777 99999999999999999998431 2346776
No 22
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.69 E-value=4e-09 Score=94.47 Aligned_cols=71 Identities=30% Similarity=0.655 Sum_probs=54.1
Q ss_pred HHHHHHhhhhcCCCCCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceec
Q 026323 9 REWKSIASAATGSENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPL 88 (240)
Q Consensus 9 ~~~ks~~~~~~~~~~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~ 88 (240)
.+|.+..-... ..+...+.|-||.+.+..|+.|+|||+||.-||.+.|..+ .-||+||.+....-++..
T Consensus 9 SD~~~T~IPSL--~~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~q---------p~CP~Cr~~~~esrlr~~ 77 (391)
T COG5432 9 SDWNQTKIPSL--KGLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQ---------PFCPVCREDPCESRLRGS 77 (391)
T ss_pred cccccccCcch--hcchhHHHhhhhhheeecceecccccchhHHHHHHHhcCC---------CCCccccccHHhhhcccc
Confidence 45555432222 3445678899999999999999999999999999999855 899999988766554444
Q ss_pred cC
Q 026323 89 YG 90 (240)
Q Consensus 89 ~~ 90 (240)
.+
T Consensus 78 s~ 79 (391)
T COG5432 78 SG 79 (391)
T ss_pred hh
Confidence 33
No 23
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=5.6e-08 Score=89.75 Aligned_cols=56 Identities=32% Similarity=0.712 Sum_probs=45.4
Q ss_pred hhcCCCCCCCccccccccccC-CC------------cEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 17 AATGSENYNGCFDCNICLDFA-YD------------PVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 17 ~~~~~~~~~~~~~C~ICle~~-~~------------pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
.+.++....++..|.||.|.+ +. |..++|||.++..|++.|++.+ .+||+||.++-
T Consensus 277 t~t~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq---------QTCPICr~p~i 345 (491)
T COG5243 277 TATEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ---------QTCPICRRPVI 345 (491)
T ss_pred hhhhhhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc---------cCCCcccCccc
Confidence 344444567789999999984 32 4788999999999999999965 89999999854
No 24
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.60 E-value=2.6e-08 Score=65.50 Aligned_cols=41 Identities=37% Similarity=0.996 Sum_probs=34.5
Q ss_pred ccccccccC---CCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccC
Q 026323 29 DCNICLDFA---YDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKA 78 (240)
Q Consensus 29 ~C~ICle~~---~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~ 78 (240)
.|+||++.+ ..+++++|||+||..|+..+.. ....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~---------~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKG---------KSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcC---------CCCCCcCCCC
Confidence 499999998 3578899999999999998872 3389999974
No 25
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.58 E-value=2.9e-09 Score=75.33 Aligned_cols=54 Identities=28% Similarity=0.694 Sum_probs=28.6
Q ss_pred CCccccccccccCCCcEE-cCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceecc
Q 026323 25 NGCFDCNICLDFAYDPVV-TLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLY 89 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~-t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~ 89 (240)
++...|++|.+.+++||. ..|.|.||+.||..-+. ..||+|+.+....|++-|.
T Consensus 5 e~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~-----------~~CPvC~~Paw~qD~~~Nr 59 (65)
T PF14835_consen 5 EELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG-----------SECPVCHTPAWIQDIQINR 59 (65)
T ss_dssp HHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT-----------TB-SSS--B-S-SS----H
T ss_pred HHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC-----------CCCCCcCChHHHHHHHhhh
Confidence 346789999999999986 59999999999976544 5699999988877776654
No 26
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.54 E-value=5.6e-08 Score=70.83 Aligned_cols=41 Identities=39% Similarity=1.035 Sum_probs=32.6
Q ss_pred cccccccccCCCc-------------EEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCcc
Q 026323 28 FDCNICLDFAYDP-------------VVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCK 77 (240)
Q Consensus 28 ~~C~ICle~~~~p-------------v~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr 77 (240)
..|.||++.+.++ +...|||.|+..||.+|++.. ..||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~---------~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN---------NTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS---------SB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC---------CcCCCCC
Confidence 3499999999332 334899999999999999854 6999997
No 27
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.9e-08 Score=99.78 Aligned_cols=59 Identities=25% Similarity=0.682 Sum_probs=53.4
Q ss_pred CCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceecc
Q 026323 23 NYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLY 89 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~ 89 (240)
...+-+.|++|.+.+++.|++.|||.||..|+...+..+. .+||.|...+..+|+.++|
T Consensus 639 ~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRq--------RKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 639 EYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQ--------RKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred HHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhc--------CCCCCCCCCCCcccccccC
Confidence 3456789999999999999999999999999999999765 9999999999999998876
No 28
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=3.5e-08 Score=85.29 Aligned_cols=47 Identities=34% Similarity=0.896 Sum_probs=41.6
Q ss_pred CCCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCcc
Q 026323 22 ENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCK 77 (240)
Q Consensus 22 ~~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr 77 (240)
....+.+.|+||++.+.+|++++|||+||..||..++. . ...||.||
T Consensus 8 ~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~--------~~~Cp~cr 54 (386)
T KOG2177|consen 8 EVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-G--------PLSCPVCR 54 (386)
T ss_pred hhccccccChhhHHHhhcCccccccchHhHHHHHHhcC-C--------CcCCcccC
Confidence 34567899999999999998889999999999999987 2 28999999
No 29
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.2e-07 Score=83.87 Aligned_cols=48 Identities=33% Similarity=0.730 Sum_probs=40.3
Q ss_pred CccccccccccCCC---cEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 26 GCFDCNICLDFAYD---PVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 26 ~~~~C~ICle~~~~---pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
...+|.||++.+.+ -+++||.|.|+..|+.+|+..-+ .+||+||.++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~--------~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYS--------NKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhc--------ccCCccCCCCC
Confidence 34889999999854 36789999999999999998433 89999998764
No 30
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.34 E-value=3.6e-07 Score=68.36 Aligned_cols=50 Identities=38% Similarity=0.713 Sum_probs=37.2
Q ss_pred ccccccccccCC-----------C-cEEc-CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026323 27 CFDCNICLDFAY-----------D-PVVT-LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 27 ~~~C~ICle~~~-----------~-pv~t-~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
+..|.||...+. + |++. .|+|.|+..||.+|++.++ ....||.||+....
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~------~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQS------SKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHcccc------CCCCCCCcCCeeee
Confidence 556777776653 2 4443 8999999999999999653 34799999987653
No 31
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.8e-07 Score=91.52 Aligned_cols=51 Identities=27% Similarity=0.632 Sum_probs=44.1
Q ss_pred CCccccccccccCCC-----cEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCc
Q 026323 25 NGCFDCNICLDFAYD-----PVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTT 84 (240)
Q Consensus 25 ~~~~~C~ICle~~~~-----pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~ 84 (240)
..+..|.||.|.+.. +..++|||.||..|+++|++.+ ..||.||..+....
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~---------qtCP~CR~~~~~~~ 344 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQ---------QTCPTCRTVLYDYV 344 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHh---------CcCCcchhhhhccc
Confidence 347889999999988 7899999999999999999965 89999998554433
No 32
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.10 E-value=2.4e-06 Score=77.86 Aligned_cols=51 Identities=24% Similarity=0.589 Sum_probs=38.1
Q ss_pred cccccccccc-CCCcE----EcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcc
Q 026323 27 CFDCNICLDF-AYDPV----VTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTM 85 (240)
Q Consensus 27 ~~~C~ICle~-~~~pv----~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l 85 (240)
+..||||... ...|. +..|||.||..|+...+.. +...||.|+..+...++
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~--------~~~~CP~C~~~lrk~~f 58 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR--------GSGSCPECDTPLRKNNF 58 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcC--------CCCCCCCCCCccchhhc
Confidence 4679999985 23332 2279999999999997753 23689999998877654
No 33
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=3.5e-06 Score=79.48 Aligned_cols=50 Identities=34% Similarity=0.956 Sum_probs=44.0
Q ss_pred CCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 23 NYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
....++.|.||...+.+||+++|||.||..||.+-+. ....||.||..+.
T Consensus 80 ~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld---------~~~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD---------QETECPLCRDELV 129 (398)
T ss_pred cccchhhhhhhHhhcCCCccccccccccHHHHHHHhc---------cCCCCcccccccc
Confidence 4467899999999999999999999999999988665 3389999998876
No 34
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.98 E-value=2.3e-06 Score=73.29 Aligned_cols=63 Identities=32% Similarity=0.553 Sum_probs=47.2
Q ss_pred HHHHHHhhhh-cCCC-CCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCC
Q 026323 9 REWKSIASAA-TGSE-NYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADI 80 (240)
Q Consensus 9 ~~~ks~~~~~-~~~~-~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v 80 (240)
++|.+--+++ ..+. ...-.|.|-||.+.+..||++.|||.||..|..+-.+. ...|-+|.+..
T Consensus 176 ~EWnA~~Ee~~v~~~~~e~IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k---------g~~C~~Cgk~t 240 (259)
T COG5152 176 QEWNAEYEEAPVISGPGEKIPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQK---------GDECGVCGKAT 240 (259)
T ss_pred hhhcchhhhcccccCCCCCCceeehhchhhccchhhhhcchhHHHHHHHHHhcc---------CCcceecchhh
Confidence 5676533322 2222 23346899999999999999999999999999887763 37899998764
No 35
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.92 E-value=6.3e-06 Score=77.01 Aligned_cols=53 Identities=34% Similarity=0.761 Sum_probs=45.0
Q ss_pred cccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCccee
Q 026323 28 FDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVP 87 (240)
Q Consensus 28 ~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p 87 (240)
-.|.||-|.-++-.+-+|||+.|..|+..|.+.+ +...||.||.+++..+-+.
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd-------~gq~CPFCRcEIKGte~vi 422 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSD-------EGQTCPFCRCEIKGTEPVI 422 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccC-------CCCCCCceeeEecccccee
Confidence 4699999999998888999999999999998743 3589999999998765443
No 36
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=6.1e-06 Score=74.52 Aligned_cols=49 Identities=31% Similarity=0.635 Sum_probs=42.5
Q ss_pred ccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcC
Q 026323 27 CFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHT 83 (240)
Q Consensus 27 ~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~ 83 (240)
..+|.||+....-||.+.|+|.||..||+--.+.+. ..|++||.++..+
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk--------~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDK--------KTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcCC--------CCCceecCCCCcc
Confidence 467999999999999999999999999987776443 7799999998754
No 37
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=1.4e-06 Score=79.99 Aligned_cols=51 Identities=29% Similarity=0.753 Sum_probs=43.0
Q ss_pred CCCCccccccccccCCCcEEc-CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 23 NYNGCFDCNICLDFAYDPVVT-LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~pv~t-~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
.+...+.|+||+++++....+ .|+|-||..||..-+.. +...||.||+.+.
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~--------gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRS--------GNNECPTCRKKLV 90 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh--------cCCCCchHHhhcc
Confidence 455779999999999988776 79999999999887774 3489999998764
No 38
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=6.2e-06 Score=56.66 Aligned_cols=49 Identities=33% Similarity=0.836 Sum_probs=40.5
Q ss_pred CCccccccccccCCCcEEcCCCCc-ccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 25 NGCFDCNICLDFAYDPVVTLCGHL-YCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~t~CGH~-FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
+.+.+|.||.|...+.|...|||. .|..|-.+.++. .+..||+||++++
T Consensus 5 ~~~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~--------~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 5 QWSDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKA--------LHGCCPICRAPIK 54 (62)
T ss_pred ccccceeeeccCcchHHHHHcchHHhHHHHHHHHHHc--------cCCcCcchhhHHH
Confidence 344789999999999999999995 589998877662 3489999999874
No 39
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=6.8e-06 Score=74.06 Aligned_cols=66 Identities=32% Similarity=0.609 Sum_probs=49.7
Q ss_pred hHHHHHHHhhhhcC--CCCCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 7 FAREWKSIASAATG--SENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 7 ~~~~~ks~~~~~~~--~~~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
++.+|++..+..-. .+...-.|.|-||...+.+||++.|||.||..|..+-++. ...|.+|.+.+.
T Consensus 219 i~~e~d~~ke~~~~~~~D~~~~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk---------~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 219 IEFEWDSAKEKKRVKIEDIELLPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK---------GEKCYVCSQQTH 286 (313)
T ss_pred eehhhhccccccceecCCcccCCccccccccccccchhhcCCceeehhhhcccccc---------CCcceecccccc
Confidence 45778887743322 2233345789999999999999999999999998776663 378999987653
No 40
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=2e-05 Score=69.54 Aligned_cols=83 Identities=18% Similarity=0.304 Sum_probs=62.3
Q ss_pred chhhhHHHHHHHhhhhcCC--CCCCCccccccccccCCCc----EEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCc
Q 026323 3 FEQYFAREWKSIASAATGS--ENYNGCFDCNICLDFAYDP----VVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVC 76 (240)
Q Consensus 3 ~~~~~~~~~ks~~~~~~~~--~~~~~~~~C~ICle~~~~p----v~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvC 76 (240)
++++|++.+..+..+.++. ..-+..+.|+||.+.+.+. +.-+|||++|..|+.+.+..+ ..||+|
T Consensus 195 lkdL~~VkFT~l~s~~~et~l~a~s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D---------~v~pv~ 265 (303)
T KOG3039|consen 195 LKDLFAVKFTPLNSEETETKLIAASKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD---------MVDPVT 265 (303)
T ss_pred hhhcceeeeeecCCchhhhhhhhhccceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc---------ccccCC
Confidence 4566666655544433322 1223679999999999874 344999999999999999866 899999
Q ss_pred cCCCCcCcceeccCCCCC
Q 026323 77 KADISHTTMVPLYGRGQT 94 (240)
Q Consensus 77 r~~v~~~~l~p~~~~g~~ 94 (240)
..+++..+|+.+..-|..
T Consensus 266 d~plkdrdiI~LqrGGTG 283 (303)
T KOG3039|consen 266 DKPLKDRDIIGLQRGGTG 283 (303)
T ss_pred CCcCcccceEeeeccccc
Confidence 999999999998655544
No 41
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.62 E-value=2.6e-05 Score=54.29 Aligned_cols=44 Identities=30% Similarity=0.594 Sum_probs=31.1
Q ss_pred CCccccccccccCCCcEEc-CCCCcccHHHHHHHHHhhccccCCCCCCCCCC
Q 026323 25 NGCFDCNICLDFAYDPVVT-LCGHLYCWPCIYKWLHVQSASLASDEHPQCPV 75 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~t-~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPv 75 (240)
.-.+.|||.+..+++||.. .|||+|....|..|++.. ....||+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~-------~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRN-------GSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTT-------S-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhc-------CCCCCCC
Confidence 4468999999999999885 999999999999999422 4589998
No 42
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.56 E-value=5.3e-05 Score=68.65 Aligned_cols=53 Identities=30% Similarity=0.681 Sum_probs=42.1
Q ss_pred cccccccccCCCcEEc-CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccC-CCCcCcceec
Q 026323 28 FDCNICLDFAYDPVVT-LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKA-DISHTTMVPL 88 (240)
Q Consensus 28 ~~C~ICle~~~~pv~t-~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~-~v~~~~l~p~ 88 (240)
+.|+.|..++..|+.| .|||.||..||...|-... +.||.|.. .+..+.+.|.
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsD--------f~CpnC~rkdvlld~l~pD 329 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSD--------FKCPNCSRKDVLLDGLTPD 329 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhcc--------ccCCCcccccchhhccCcc
Confidence 8899999999999999 6899999999987776332 99999965 3444444443
No 43
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.53 E-value=2.9e-05 Score=56.16 Aligned_cols=56 Identities=30% Similarity=0.699 Sum_probs=26.7
Q ss_pred ccccccccccCC-C---cEEc----CCCCcccHHHHHHHHHhhccccCCC--CCCCCCCccCCCCc
Q 026323 27 CFDCNICLDFAY-D---PVVT----LCGHLYCWPCIYKWLHVQSASLASD--EHPQCPVCKADISH 82 (240)
Q Consensus 27 ~~~C~ICle~~~-~---pv~t----~CGH~FC~~CI~~wl~~~s~~~~~~--~~~~CPvCr~~v~~ 82 (240)
+.+|.||++... + |++. .|+..|+..||++|+.....+...- ...+||.|+.+++-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 468999998864 2 3332 7999999999999998654221111 12579999988753
No 44
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.52 E-value=4.7e-05 Score=73.44 Aligned_cols=58 Identities=28% Similarity=0.681 Sum_probs=48.6
Q ss_pred CCCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcC
Q 026323 22 ENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHT 83 (240)
Q Consensus 22 ~~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~ 83 (240)
+...++..|.+|.|..++++.+.|.|.||..||.+++..-+ .....+||+|...++.+
T Consensus 531 ~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~----~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 531 DENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFM----ENNNVTCPVCHIGLSID 588 (791)
T ss_pred ccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhh----cccCCCCcccccccccc
Confidence 34567899999999999999999999999999999998543 23449999998887655
No 45
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.51 E-value=4.3e-05 Score=72.20 Aligned_cols=56 Identities=34% Similarity=0.866 Sum_probs=47.8
Q ss_pred CCCCccccccccccCCCcEEc-CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCccee
Q 026323 23 NYNGCFDCNICLDFAYDPVVT-LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVP 87 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~pv~t-~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p 87 (240)
..+++..|+||...+.+|+.+ .|||.||..|+..|+.. +..||+|+..+...+.++
T Consensus 17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~---------~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN---------HQKCPVCRQELTQAEELP 73 (391)
T ss_pred CCcccccCccccccccCCCCCCCCCCcccccccchhhcc---------CcCCcccccccchhhccC
Confidence 357789999999999999995 99999999999999984 389999988776655543
No 46
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=7.9e-05 Score=68.80 Aligned_cols=48 Identities=35% Similarity=0.739 Sum_probs=40.2
Q ss_pred CCccccccccccCCCcEEcCCCCcc-cHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 25 NGCFDCNICLDFAYDPVVTLCGHLY-CWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~t~CGH~F-C~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
+...+|-||+...++-+++||.|+. |..|.+... .+. ..||+||..+.
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~--------n~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQT--------NNCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHH-Hhh--------cCCCccccchH
Confidence 4468899999999999999999974 999987655 332 89999999884
No 47
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.44 E-value=4.3e-05 Score=72.32 Aligned_cols=47 Identities=30% Similarity=0.754 Sum_probs=39.9
Q ss_pred CCCccccccccccCCCcE----EcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 24 YNGCFDCNICLDFAYDPV----VTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 24 ~~~~~~C~ICle~~~~pv----~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
.-+.-+|+||+|.+.+.+ .+.|.|.|+..|+.+|.. ..||+||...+
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~-----------~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD-----------SSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhccc-----------CcChhhhhhcC
Confidence 346789999999997654 469999999999999998 88999997655
No 48
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00013 Score=65.42 Aligned_cols=52 Identities=27% Similarity=0.639 Sum_probs=42.3
Q ss_pred CCCCccccccccccCCCcEEc-CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 23 NYNGCFDCNICLDFAYDPVVT-LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~pv~t-~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
....+.+|++|-+....|.+. +|||.||..||..-...+ ....||.|...+.
T Consensus 235 ~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~-------asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWD-------ASFTCPLCGENVE 287 (298)
T ss_pred cccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcch-------hhcccCccCCCCc
Confidence 445679999999999999776 699999999998776643 3489999987653
No 49
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=7.9e-05 Score=71.36 Aligned_cols=50 Identities=26% Similarity=0.735 Sum_probs=39.5
Q ss_pred CCCccccccccccCC-----------------CcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 24 YNGCFDCNICLDFAY-----------------DPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 24 ~~~~~~C~ICle~~~-----------------~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
.+...+|+||...+. +-.++||.|.|+..|+.+|.+.-+ ..||+||..+.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~yk--------l~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYK--------LICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhc--------ccCCccCCCCC
Confidence 345688999997652 124569999999999999998542 69999998764
No 50
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=8e-05 Score=69.85 Aligned_cols=61 Identities=34% Similarity=0.699 Sum_probs=49.5
Q ss_pred CccccccccccCCCc-----EEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceeccCCCC
Q 026323 26 GCFDCNICLDFAYDP-----VVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGRGQ 93 (240)
Q Consensus 26 ~~~~C~ICle~~~~p-----v~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~~~g~ 93 (240)
....|+||+|.+.-+ |.+.|||.|-..||.+||. +. ....||.|+......++.+.|....
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~-k~------~~~~cp~c~~katkr~i~~e~alR~ 68 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLG-KK------TKMQCPLCSGKATKRQIRPEYALRV 68 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHh-hh------hhhhCcccCChhHHHHHHHHHHHHH
Confidence 357899999998765 5568999999999999997 32 4589999998888888888776543
No 51
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.32 E-value=6.1e-05 Score=68.88 Aligned_cols=51 Identities=31% Similarity=0.730 Sum_probs=43.5
Q ss_pred CCCCccccccccccCCCcEE-cCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026323 23 NYNGCFDCNICLDFAYDPVV-TLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~pv~-t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
.......|.+|..++.|+.+ +.|-|+||..||.+++... ..||.|...+-.
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~---------~~CP~C~i~ih~ 62 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEES---------KYCPTCDIVIHK 62 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHh---------ccCCccceeccC
Confidence 45567899999999999865 4899999999999999953 899999876644
No 52
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.29 E-value=0.00029 Score=47.42 Aligned_cols=42 Identities=31% Similarity=0.789 Sum_probs=33.4
Q ss_pred ccccccc--cCCCcEEcCCC-----CcccHHHHHHHHHhhccccCCCCCCCCCCcc
Q 026323 29 DCNICLD--FAYDPVVTLCG-----HLYCWPCIYKWLHVQSASLASDEHPQCPVCK 77 (240)
Q Consensus 29 ~C~ICle--~~~~pv~t~CG-----H~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr 77 (240)
.|-||++ ...++.+.||. |.++..|+.+|+... ....||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~-------~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINES-------GNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHc-------CCCcCCCCC
Confidence 4889997 44567788985 789999999999865 236899995
No 53
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00026 Score=65.52 Aligned_cols=51 Identities=25% Similarity=0.528 Sum_probs=44.6
Q ss_pred CCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026323 23 NYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
...++..|+||.--....|..||+|.-|..||.+.+- +.+.|-.||..+..
T Consensus 418 p~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlm---------N~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 418 PDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLM---------NCKRCFFCKTTVID 468 (489)
T ss_pred CCcccccCcceecccchhhccCCCCchHHHHHHHHHh---------cCCeeeEecceeee
Confidence 4467899999999999999999999999999999887 44899999987753
No 54
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.00032 Score=65.15 Aligned_cols=55 Identities=27% Similarity=0.751 Sum_probs=42.8
Q ss_pred CCccccccccccCCCcE-----E---cCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 25 NGCFDCNICLDFAYDPV-----V---TLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv-----~---t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
..+..|-||+|...+.. . .+|.|.||..||..|-+... .+....+.||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q--~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQ--FESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhc--cccccccCCCcccCccc
Confidence 45789999999987765 3 57999999999999986442 13344699999997654
No 55
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.05 E-value=0.00021 Score=72.93 Aligned_cols=52 Identities=29% Similarity=0.889 Sum_probs=40.6
Q ss_pred CCCCccccccccccCC--C---c--EEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 23 NYNGCFDCNICLDFAY--D---P--VVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~--~---p--v~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
..++.-+|+||+..+. + | ..-.|.|.|+..|+++|.+.. +..+||+||..+.
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss-------~~s~CPlCRseit 1523 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASS-------ARSNCPLCRSEIT 1523 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhc-------CCCCCCccccccc
Confidence 4567788999998874 2 2 223699999999999999954 5689999997764
No 56
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.00017 Score=64.59 Aligned_cols=57 Identities=25% Similarity=0.466 Sum_probs=44.7
Q ss_pred CCccccccccccCCCcE----------EcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceec
Q 026323 25 NGCFDCNICLDFAYDPV----------VTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPL 88 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv----------~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~ 88 (240)
.++..|.||-..+...+ .+.|+|+|+-.||.-|.-.. ...+||.||..+..+.+..|
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivG-------KkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVG-------KKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeec-------CCCCCchHHHHhhHhhhccC
Confidence 46788999997774433 46899999999999998743 45899999998876666554
No 57
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=96.90 E-value=0.00076 Score=49.88 Aligned_cols=29 Identities=31% Similarity=0.878 Sum_probs=26.1
Q ss_pred CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 44 LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 44 ~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
.|.|.|+..||++||.++ ..||.+++...
T Consensus 53 ~CnHaFH~HCI~rWL~Tk---------~~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTK---------GVCPLDRQTWV 81 (88)
T ss_pred ecchHHHHHHHHHHHhhC---------CCCCCCCceeE
Confidence 799999999999999965 89999998764
No 58
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.87 E-value=0.00054 Score=61.25 Aligned_cols=61 Identities=21% Similarity=0.437 Sum_probs=48.3
Q ss_pred CCCCccccccccccCCCc---EEc-CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceeccCCCC
Q 026323 23 NYNGCFDCNICLDFAYDP---VVT-LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGRGQ 93 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~p---v~t-~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~~~g~ 93 (240)
.....+.|||....+..- |.+ +|||+|+..+|...- . ...||+|-.++...|++++.....
T Consensus 109 ~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~--------~~~Cp~c~~~f~~~DiI~Lnp~~e 173 (260)
T PF04641_consen 109 NSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--K--------SKKCPVCGKPFTEEDIIPLNPPEE 173 (260)
T ss_pred cCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--c--------cccccccCCccccCCEEEecCCcc
Confidence 346789999999998542 333 999999999998763 1 167999999999999998876554
No 59
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.00015 Score=65.47 Aligned_cols=42 Identities=36% Similarity=0.777 Sum_probs=34.6
Q ss_pred ccccccccccCCCcEEcCCCCc-ccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 27 CFDCNICLDFAYDPVVTLCGHL-YCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 27 ~~~C~ICle~~~~pv~t~CGH~-FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
...|.||+|...|-+.++|||. -|..|=.+ ...||+||+.+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr-------------m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR-------------MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc-------------cccCchHHHHHH
Confidence 6789999999999999999995 48888543 257999997653
No 60
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.00064 Score=62.94 Aligned_cols=47 Identities=38% Similarity=0.808 Sum_probs=37.2
Q ss_pred CCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 23 NYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
.+.....|.||++...+.+.++|||.-| |..-..+. .+||+||..+.
T Consensus 301 ~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~l----------~~CPvCR~rI~ 347 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKHL----------PQCPVCRQRIR 347 (355)
T ss_pred ccCCCCceEEecCCccceeeecCCcEEE--chHHHhhC----------CCCchhHHHHH
Confidence 3445688999999999999999999977 76554442 66999998764
No 61
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.00081 Score=61.66 Aligned_cols=57 Identities=26% Similarity=0.667 Sum_probs=46.7
Q ss_pred CCccccccccccCCCcEEc-CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceeccC
Q 026323 25 NGCFDCNICLDFAYDPVVT-LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYG 90 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~t-~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~~ 90 (240)
.+...|+||+....+|.++ --|-+||++|+..++.. +..||+-..+...++++.++.
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~---------~~~CPVT~~p~~v~~l~rl~~ 355 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN---------YGHCPVTGYPASVDHLIRLFN 355 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHh---------cCCCCccCCcchHHHHHHHhc
Confidence 3557899999999998776 56999999999999984 489999988887777766543
No 62
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=96.74 E-value=0.0014 Score=52.88 Aligned_cols=52 Identities=27% Similarity=0.648 Sum_probs=43.7
Q ss_pred CccccccccccCCCcEEc----CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcC
Q 026323 26 GCFDCNICLDFAYDPVVT----LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHT 83 (240)
Q Consensus 26 ~~~~C~ICle~~~~pv~t----~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~ 83 (240)
.-.+|+||.|.-.|...+ -||-..|-.|-...++..+ -.+.||+|+..++.+
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~------~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCN------LYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcc------cCCCCCccccccccc
Confidence 568999999999888776 4999999999988888653 669999999887654
No 63
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.67 E-value=0.00089 Score=46.12 Aligned_cols=48 Identities=25% Similarity=0.442 Sum_probs=38.8
Q ss_pred CccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCc
Q 026323 26 GCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTT 84 (240)
Q Consensus 26 ~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~ 84 (240)
....|-.|...-...++++|||..|..|..-+-. ..||.|..++...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~rY-----------ngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGERY-----------NGCPFCGTPFEFDD 53 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChhhc-----------cCCCCCCCcccCCC
Confidence 4566888888888889999999999999755433 88999999886654
No 64
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.62 E-value=0.00038 Score=69.93 Aligned_cols=52 Identities=21% Similarity=0.549 Sum_probs=40.3
Q ss_pred CccccccccccCCCcEE---cCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcce
Q 026323 26 GCFDCNICLDFAYDPVV---TLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMV 86 (240)
Q Consensus 26 ~~~~C~ICle~~~~pv~---t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~ 86 (240)
..-.|++|+..+.+..+ .+|+|.||..||..|-... .+||+||..+...++.
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a---------qTCPiDR~EF~~v~V~ 176 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA---------QTCPVDRGEFGEVKVL 176 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc---------ccCchhhhhhheeeee
Confidence 44678999887765433 4899999999999999854 8999999887654433
No 65
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.0014 Score=61.29 Aligned_cols=48 Identities=25% Similarity=0.798 Sum_probs=34.5
Q ss_pred cccccccccCCCc---EEc-CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 28 FDCNICLDFAYDP---VVT-LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 28 ~~C~ICle~~~~p---v~t-~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
-.|.||.|....- -.+ .|||+|+..|+..|++... ..+.||.|+-.+.
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~P------s~R~cpic~ik~~ 56 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDP------SNRGCPICQIKLQ 56 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCC------ccCCCCceeeccc
Confidence 4699996655322 112 5999999999999999653 2279999994333
No 66
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.00091 Score=49.08 Aligned_cols=32 Identities=34% Similarity=0.895 Sum_probs=27.6
Q ss_pred CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 44 LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 44 ~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
.|.|.|+..||.+|+..++ ....||.||+...
T Consensus 50 ~C~h~fh~hCI~~wl~~~t------sq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 50 YCLHAFHAHCILKWLNTPT------SQGQCPMCRQTWQ 81 (84)
T ss_pred HHHHHHHHHHHHHHhcCcc------ccccCCcchheeE
Confidence 7999999999999999664 4489999998764
No 67
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=96.21 E-value=0.0074 Score=50.19 Aligned_cols=61 Identities=23% Similarity=0.568 Sum_probs=41.0
Q ss_pred CccccccccccCCCcEEcCCC------------Ccc-cHHHHHHHHHhhcccc----------------------CCCCC
Q 026323 26 GCFDCNICLDFAYDPVVTLCG------------HLY-CWPCIYKWLHVQSASL----------------------ASDEH 70 (240)
Q Consensus 26 ~~~~C~ICle~~~~pv~t~CG------------H~F-C~~CI~~wl~~~s~~~----------------------~~~~~ 70 (240)
++..|+||+|..++.|.|.|. ..| +..||.++-+...... .....
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPE 80 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccccc
Confidence 357899999999999998643 222 4578888766321111 01125
Q ss_pred CCCCCccCCCCcCcce
Q 026323 71 PQCPVCKADISHTTMV 86 (240)
Q Consensus 71 ~~CPvCr~~v~~~~l~ 86 (240)
..||+||..|....++
T Consensus 81 L~CPLCRG~V~GWtvv 96 (162)
T PF07800_consen 81 LACPLCRGEVKGWTVV 96 (162)
T ss_pred ccCccccCceeceEEc
Confidence 7899999998766544
No 68
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.0027 Score=59.82 Aligned_cols=65 Identities=25% Similarity=0.492 Sum_probs=42.7
Q ss_pred HHhhhhcCCCCCCCccccccccccCCC---cEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccC
Q 026323 13 SIASAATGSENYNGCFDCNICLDFAYD---PVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKA 78 (240)
Q Consensus 13 s~~~~~~~~~~~~~~~~C~ICle~~~~---pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~ 78 (240)
+.++.+....=....++|.||.+.... -+.++|+|.||..|+..+...+. .+..-...+||-++.
T Consensus 170 ~~deea~~~~F~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i-~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 170 QFDEEATLEKFVNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQI-QEGQVSCLKCPDPKC 237 (445)
T ss_pred hhhHHHHHHHHHhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhh-hcceeeeecCCCCCC
Confidence 334444333334567999999998754 35689999999999999988542 112223467876653
No 69
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.97 E-value=0.0017 Score=65.30 Aligned_cols=52 Identities=29% Similarity=0.743 Sum_probs=43.7
Q ss_pred cccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCccee
Q 026323 28 FDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVP 87 (240)
Q Consensus 28 ~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p 87 (240)
..|.||.+ ...++.+.|||.||..|+...+... +...||.|+..+..+++..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~-------~~~~~~~cr~~l~~~~l~s 506 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQS-------ENAPCPLCRNVLKEKKLLS 506 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccc-------cCCCCcHHHHHHHHHHHhh
Confidence 79999999 8888999999999999999888744 2348999999887766554
No 70
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=95.74 E-value=0.021 Score=54.56 Aligned_cols=36 Identities=25% Similarity=0.641 Sum_probs=32.4
Q ss_pred CCccccccccccCCCcEEcCCCCcccHHHHHHHHHh
Q 026323 25 NGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHV 60 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~ 60 (240)
++++.|+||...+.+|++++|+|..|..|....+..
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 567899999999999999999999999999876653
No 71
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.43 E-value=0.0044 Score=54.64 Aligned_cols=53 Identities=32% Similarity=0.765 Sum_probs=37.1
Q ss_pred cccccccccCC-Cc-EEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceeccCC
Q 026323 28 FDCNICLDFAY-DP-VVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGR 91 (240)
Q Consensus 28 ~~C~ICle~~~-~p-v~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~~~ 91 (240)
..|+.|..... ++ ..|.|+|+||..|...-. ...||.|++.+....+..++..
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~-----------~~~C~lCkk~ir~i~l~~slp~ 58 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASS-----------PDVCPLCKKSIRIIQLNRSLPT 58 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCC-----------ccccccccceeeeeecccccch
Confidence 56888876653 33 457999999999974321 1399999999876666555443
No 72
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.013 Score=45.40 Aligned_cols=27 Identities=30% Similarity=0.984 Sum_probs=24.4
Q ss_pred CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCC
Q 026323 44 LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKAD 79 (240)
Q Consensus 44 ~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~ 79 (240)
.|.|.|+..||.+||++. ..||+|.++
T Consensus 80 ~CNHaFH~hCisrWlktr---------~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTR---------NVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhc---------CcCCCcCcc
Confidence 699999999999999965 899999765
No 73
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.013 Score=55.08 Aligned_cols=70 Identities=20% Similarity=0.497 Sum_probs=49.2
Q ss_pred HHHHHHhhhhcCCC-----CCCCccccccccccCCC---cEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCC
Q 026323 9 REWKSIASAATGSE-----NYNGCFDCNICLDFAYD---PVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADI 80 (240)
Q Consensus 9 ~~~ks~~~~~~~~~-----~~~~~~~C~ICle~~~~---pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v 80 (240)
.+|.+..+-..+.+ ....-|.|||=.+.-.+ |+.+.|||+.|..-|.+..+..+ ...+||.|-...
T Consensus 311 ~~W~~~deLPveIeL~~~~~fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~------~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 311 GEWNTKDELPVEIELGKEYHFHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGS------QSFKCPYCPVEQ 384 (394)
T ss_pred cCccccccCccceeccccccccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCC------eeeeCCCCCccc
Confidence 45877765444433 23456999998777643 79999999999999988766322 248999997665
Q ss_pred CcCc
Q 026323 81 SHTT 84 (240)
Q Consensus 81 ~~~~ 84 (240)
...+
T Consensus 385 ~~~~ 388 (394)
T KOG2817|consen 385 LASD 388 (394)
T ss_pred CHHh
Confidence 4443
No 74
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=94.59 E-value=0.012 Score=47.81 Aligned_cols=33 Identities=30% Similarity=0.768 Sum_probs=26.5
Q ss_pred ccccccccccCCC--cEE-cCCC------CcccHHHHHHHHH
Q 026323 27 CFDCNICLDFAYD--PVV-TLCG------HLYCWPCIYKWLH 59 (240)
Q Consensus 27 ~~~C~ICle~~~~--pv~-t~CG------H~FC~~CI~~wl~ 59 (240)
..+|.||++.+.+ .|+ +.|| |.||..|+.+|-.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 4779999999977 554 4666 6899999999954
No 75
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.52 E-value=0.036 Score=51.58 Aligned_cols=52 Identities=21% Similarity=0.599 Sum_probs=40.7
Q ss_pred CCCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCC
Q 026323 22 ENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADI 80 (240)
Q Consensus 22 ~~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v 80 (240)
+.++++-.|-||-+-+.-..++||+|..|.-|-.+.-..= ..+.|+.||.+-
T Consensus 56 dtDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY-------~~K~C~~CrTE~ 107 (493)
T COG5236 56 DTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALY-------MQKGCPLCRTET 107 (493)
T ss_pred ccccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHH-------hccCCCcccccc
Confidence 3456678899999999988899999999999986643211 238999998653
No 76
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=0.038 Score=48.65 Aligned_cols=54 Identities=26% Similarity=0.565 Sum_probs=38.6
Q ss_pred cccccccccCC--CcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026323 28 FDCNICLDFAY--DPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 28 ~~C~ICle~~~--~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
-.|.+|...+. |.+.+-|-|+|+|+|+.+|...-.. .......+||.|..+|-.
T Consensus 51 pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPa-nTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPA-NTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCC-cCCCCcccCCCCCCccCC
Confidence 45788887774 4577899999999999999873211 111234799999988753
No 77
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=94.26 E-value=0.031 Score=51.22 Aligned_cols=46 Identities=30% Similarity=0.662 Sum_probs=36.8
Q ss_pred CCCccccccccccCCCcEEc-CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 24 YNGCFDCNICLDFAYDPVVT-LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 24 ~~~~~~C~ICle~~~~pv~t-~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
..+-++||||.+.+..|+.= .=||+-|..|-.+.. ..||.|+..+.
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~------------~~CP~Cr~~~g 91 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVS------------NKCPTCRLPIG 91 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhhhc------------ccCCccccccc
Confidence 45679999999999999543 458999999975322 78999998876
No 78
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=0.028 Score=50.67 Aligned_cols=46 Identities=33% Similarity=0.652 Sum_probs=37.0
Q ss_pred ccccccccccCC------CcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCC
Q 026323 27 CFDCNICLDFAY------DPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADI 80 (240)
Q Consensus 27 ~~~C~ICle~~~------~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v 80 (240)
...|.||-+.+. .|.++.|||.+|..|+.+.+... ...||.||...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~--------~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNS--------RILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCc--------eeeccCCCCcc
Confidence 357999998874 47888999999999998877633 37789999874
No 79
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.98 E-value=0.026 Score=37.90 Aligned_cols=43 Identities=26% Similarity=0.566 Sum_probs=20.9
Q ss_pred cccccccCCCc--EEc--CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCC
Q 026323 30 CNICLDFAYDP--VVT--LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADI 80 (240)
Q Consensus 30 C~ICle~~~~p--v~t--~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v 80 (240)
|++|.+.+... ... +||+-.|..|..+.++. ....||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~--------~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILEN--------EGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTS--------S-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhc--------cCCCCCCCCCCC
Confidence 78898887332 222 78999999998877652 348999999763
No 80
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=0.024 Score=56.38 Aligned_cols=43 Identities=35% Similarity=0.783 Sum_probs=34.1
Q ss_pred CCccccccccccC----CCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCC
Q 026323 25 NGCFDCNICLDFA----YDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKAD 79 (240)
Q Consensus 25 ~~~~~C~ICle~~----~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~ 79 (240)
.+-..|+||+..+ ..||.+-|||+.|..|+..... ..|| |+.+
T Consensus 9 ~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn-----------~scp-~~~D 55 (861)
T KOG3161|consen 9 VLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN-----------ASCP-TKRD 55 (861)
T ss_pred HHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh-----------ccCC-CCcc
Confidence 3457799997766 4689999999999999987666 7898 6543
No 81
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.62 E-value=0.026 Score=53.18 Aligned_cols=47 Identities=19% Similarity=0.460 Sum_probs=37.4
Q ss_pred CccccccccccCCC-c---EEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCC
Q 026323 26 GCFDCNICLDFAYD-P---VVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKAD 79 (240)
Q Consensus 26 ~~~~C~ICle~~~~-p---v~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~ 79 (240)
-++.|..|-+.+-. + ..++|.|+|+..|++++|... ....||.||+-
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n-------~~rsCP~Crkl 414 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENN-------GTRSCPNCRKL 414 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhC-------CCCCCccHHHH
Confidence 35789999998732 1 347999999999999999744 45899999843
No 82
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=93.34 E-value=0.038 Score=50.47 Aligned_cols=60 Identities=28% Similarity=0.546 Sum_probs=40.5
Q ss_pred CCCCccccccccccCCCc---EEcCCCCcccHHHHHHHHHhh---------cc-c----cCCCCCCCCCCccCCCCc
Q 026323 23 NYNGCFDCNICLDFAYDP---VVTLCGHLYCWPCIYKWLHVQ---------SA-S----LASDEHPQCPVCKADISH 82 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~p---v~t~CGH~FC~~CI~~wl~~~---------s~-~----~~~~~~~~CPvCr~~v~~ 82 (240)
+....-+|.||+--+.+. ++|.|-|-++..|+.++|..- .. . ........||+||..+..
T Consensus 111 nn~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 111 NNHPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 444567899999877542 678999999999998887610 00 0 001122569999988764
No 83
>PHA03096 p28-like protein; Provisional
Probab=93.19 E-value=0.053 Score=49.37 Aligned_cols=50 Identities=20% Similarity=0.355 Sum_probs=34.5
Q ss_pred cccccccccCCCc--------EEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCC
Q 026323 28 FDCNICLDFAYDP--------VVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADI 80 (240)
Q Consensus 28 ~~C~ICle~~~~p--------v~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v 80 (240)
-.|.||++...+- +...|.|.||..|+..|..... .....+.||.|+..+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~---~~e~~~~c~~~~~~~ 236 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESL---YKETEPENRRLNTVI 236 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhh---hcccCccccchhhHH
Confidence 6799999987532 3347999999999999998542 223335555555433
No 84
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=92.51 E-value=0.084 Score=35.56 Aligned_cols=46 Identities=24% Similarity=0.617 Sum_probs=25.2
Q ss_pred cccccccccCCCcEEc-CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccC
Q 026323 28 FDCNICLDFAYDPVVT-LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKA 78 (240)
Q Consensus 28 ~~C~ICle~~~~pv~t-~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~ 78 (240)
+.|+|....+..|+.. .|.|.-|.+ +..|++... ..+...||+|.+
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~----~~~~W~CPiC~~ 49 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQ----RTPKWKCPICNK 49 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHH----HS---B-TTT--
T ss_pred eeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhh----ccCCeECcCCcC
Confidence 6799999999999875 899998865 456666432 124489999975
No 85
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=92.11 E-value=0.067 Score=40.46 Aligned_cols=32 Identities=28% Similarity=0.602 Sum_probs=26.1
Q ss_pred CCCccccccccccCCCcE--EcCCCCcccHHHHH
Q 026323 24 YNGCFDCNICLDFAYDPV--VTLCGHLYCWPCIY 55 (240)
Q Consensus 24 ~~~~~~C~ICle~~~~pv--~t~CGH~FC~~CI~ 55 (240)
..++..|++|...+...+ +.||||.++..|+.
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 356778999999997663 45999999999975
No 86
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=91.94 E-value=0.12 Score=46.98 Aligned_cols=46 Identities=26% Similarity=0.712 Sum_probs=34.5
Q ss_pred ccccccccC-CCc----EEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026323 29 DCNICLDFA-YDP----VVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 29 ~C~ICle~~-~~p----v~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
.|++|.... ..| .+-+|||..|-.|+.+..... ...||.|-..+..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g--------~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLG--------PAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcC--------CCCCCcccchhhh
Confidence 489998653 344 122899999999999988754 4899999776654
No 87
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=91.74 E-value=0.22 Score=41.62 Aligned_cols=50 Identities=20% Similarity=0.444 Sum_probs=37.0
Q ss_pred CCCccccccccccCCCcEEcCCCC-----cccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 24 YNGCFDCNICLDFAYDPVVTLCGH-----LYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 24 ~~~~~~C~ICle~~~~pv~t~CGH-----~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
...+..|-||.+...+ ...||.- .-+..|+.+|+... +...|+.|+....
T Consensus 5 s~~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s-------~~~~CeiC~~~Y~ 59 (162)
T PHA02825 5 SLMDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTS-------KNKSCKICNGPYN 59 (162)
T ss_pred CCCCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcC-------CCCcccccCCeEE
Confidence 3456789999988643 3456664 33889999999843 5589999988764
No 88
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=91.64 E-value=0.037 Score=55.51 Aligned_cols=52 Identities=29% Similarity=0.742 Sum_probs=41.8
Q ss_pred CCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026323 25 NGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
.-..+|+||.+...+|+.+.|-|.||..|+...+.... +...||+|+..+..
T Consensus 19 ~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~------~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 19 QKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKK------GPKQCALCKSDIEK 70 (684)
T ss_pred hhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccC------ccccchhhhhhhhh
Confidence 34678999999999999999999999999876665332 25899999966543
No 89
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.38 E-value=0.16 Score=51.97 Aligned_cols=43 Identities=30% Similarity=0.709 Sum_probs=35.4
Q ss_pred CccccccccccCCCcEE-cCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCC
Q 026323 26 GCFDCNICLDFAYDPVV-TLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADI 80 (240)
Q Consensus 26 ~~~~C~ICle~~~~pv~-t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v 80 (240)
....|..|--.+.-|++ ..|||.|+..|+. . ....||.|+.+.
T Consensus 839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~---------~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLE---D---------KEDKCPKCLPEL 882 (933)
T ss_pred eeeeecccCCccccceeeeecccHHHHHhhc---c---------CcccCCccchhh
Confidence 34689999999999965 6999999999986 1 348999998744
No 90
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.25 E-value=0.026 Score=59.87 Aligned_cols=48 Identities=40% Similarity=0.882 Sum_probs=40.8
Q ss_pred CCCCccccccccccCC-CcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCC
Q 026323 23 NYNGCFDCNICLDFAY-DPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKAD 79 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~-~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~ 79 (240)
+..+...|.||++.+. ...+..|||.+|..|+..|+..+ ..||.|+..
T Consensus 1149 ~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~---------s~~~~~ksi 1197 (1394)
T KOG0298|consen 1149 NLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYAS---------SRCPICKSI 1197 (1394)
T ss_pred HhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHh---------ccCcchhhh
Confidence 3456679999999998 56778999999999999999965 789999843
No 91
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.09 E-value=0.18 Score=44.93 Aligned_cols=40 Identities=25% Similarity=0.381 Sum_probs=33.4
Q ss_pred CCCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhh
Q 026323 22 ENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQ 61 (240)
Q Consensus 22 ~~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~ 61 (240)
+...+-..|.+|+....+||+++=||+||..||.+++-.+
T Consensus 38 DsiK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ilaq 77 (303)
T KOG3039|consen 38 DSIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILAQ 77 (303)
T ss_pred cccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHHH
Confidence 3445556679999999999999999999999998887643
No 92
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.93 E-value=0.19 Score=42.85 Aligned_cols=58 Identities=26% Similarity=0.557 Sum_probs=36.9
Q ss_pred CCccccccccccCCCcEE-------cCCCCcccHHHHHHHHHhhccccCCC--CCCCCCCccCCCCc
Q 026323 25 NGCFDCNICLDFAYDPVV-------TLCGHLYCWPCIYKWLHVQSASLASD--EHPQCPVCKADISH 82 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~-------t~CGH~FC~~CI~~wl~~~s~~~~~~--~~~~CPvCr~~v~~ 82 (240)
++.-.|-||+-+--+... ..||..|+.-|+..||..-..+...- --..||.|..++..
T Consensus 163 d~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 163 DELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 344567777765433322 37999999999999998432211111 12689999887643
No 93
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=90.46 E-value=0.22 Score=33.07 Aligned_cols=40 Identities=25% Similarity=0.857 Sum_probs=25.4
Q ss_pred cccccccCCC--cEEcCCCC-----cccHHHHHHHHHhhccccCCCCCCCCCCc
Q 026323 30 CNICLDFAYD--PVVTLCGH-----LYCWPCIYKWLHVQSASLASDEHPQCPVC 76 (240)
Q Consensus 30 C~ICle~~~~--pv~t~CGH-----~FC~~CI~~wl~~~s~~~~~~~~~~CPvC 76 (240)
|-||++.-.+ +.+.+|.- ..+..|+.+|+... +..+|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~-------~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRES-------GNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHH-------T-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhc-------CCCcCCCC
Confidence 6788877543 56777763 44889999999964 34678887
No 94
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=90.42 E-value=0.2 Score=46.63 Aligned_cols=51 Identities=18% Similarity=0.400 Sum_probs=33.1
Q ss_pred ccccccccccCCC--cEE--cCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcc
Q 026323 27 CFDCNICLDFAYD--PVV--TLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTM 85 (240)
Q Consensus 27 ~~~C~ICle~~~~--pv~--t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l 85 (240)
+..|++|.|.+.. --. -+||-..|.-|....-+. -...||.||+....+.+
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~--------lngrcpacrr~y~denv 68 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN--------LNGRCPACRRKYDDENV 68 (480)
T ss_pred cccCcccccccccccCCcccCCcccHHHHHHHHHHHhh--------ccCCChHhhhhccccce
Confidence 3449999998743 222 378877777775543331 22789999987765543
No 95
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=89.61 E-value=0.24 Score=50.80 Aligned_cols=55 Identities=27% Similarity=0.651 Sum_probs=40.7
Q ss_pred CCccccccccccCCC--cEE--cCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 25 NGCFDCNICLDFAYD--PVV--TLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 25 ~~~~~C~ICle~~~~--pv~--t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
.+.++|-||.|.+.. |+- ..|=|+|+..||.+|..... ........||.|.....
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~e--k~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSE--KTGQDGWRCPACQSVSK 247 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhh--hccCccccCCcccchhc
Confidence 456899999999854 332 26889999999999998521 23346699999986543
No 96
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=88.97 E-value=0.41 Score=31.22 Aligned_cols=40 Identities=25% Similarity=0.629 Sum_probs=23.9
Q ss_pred cccccccCCCcEEc---CCCCcccHHHHHHHHHhhccccCCCCCCCCCCc
Q 026323 30 CNICLDFAYDPVVT---LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVC 76 (240)
Q Consensus 30 C~ICle~~~~pv~t---~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvC 76 (240)
|.+|.+++...+.= .|+-.++..|+..++..++ ...||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~-------~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRS-------NPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-S-------S-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCC-------CCCCcCC
Confidence 78899998887663 4998999999999998552 2379987
No 97
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.87 E-value=0.16 Score=46.78 Aligned_cols=71 Identities=15% Similarity=0.363 Sum_probs=48.3
Q ss_pred HHHHHHhhhhcC-----CCCCCCccccccccccCC---CcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCC
Q 026323 9 REWKSIASAATG-----SENYNGCFDCNICLDFAY---DPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADI 80 (240)
Q Consensus 9 ~~~ks~~~~~~~-----~~~~~~~~~C~ICle~~~---~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v 80 (240)
.+|++-.+..-+ .-....-|.||+=.+... .|+.+.|||+.-..-+...-+..+ ...+||.|-..-
T Consensus 313 vdWT~~~eLP~eIklp~~~hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~------~~FKCPYCP~~~ 386 (396)
T COG5109 313 VDWTDDSELPMEIKLPKGRHFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGV------LSFKCPYCPEMS 386 (396)
T ss_pred cCccCCCCCceEEecCCcccccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCc------EEeeCCCCCcch
Confidence 557765553332 124456799999877764 379999999999988877655332 349999997665
Q ss_pred CcCcc
Q 026323 81 SHTTM 85 (240)
Q Consensus 81 ~~~~l 85 (240)
...++
T Consensus 387 ~~~~~ 391 (396)
T COG5109 387 KYENI 391 (396)
T ss_pred hhhhh
Confidence 54443
No 98
>PHA02862 5L protein; Provisional
Probab=88.25 E-value=0.45 Score=39.21 Aligned_cols=46 Identities=24% Similarity=0.647 Sum_probs=34.9
Q ss_pred cccccccccCCCcEEcCCCC-----cccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 28 FDCNICLDFAYDPVVTLCGH-----LYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 28 ~~C~ICle~~~~pv~t~CGH-----~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
..|=||.+.-.+. ..||.- .-+..|+.+|+... +...|+.|+.+..
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S-------~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYS-------KKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcC-------CCcCccCCCCeEE
Confidence 4699999987655 467653 45789999999742 5689999998764
No 99
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=86.48 E-value=0.51 Score=51.37 Aligned_cols=58 Identities=24% Similarity=0.469 Sum_probs=39.8
Q ss_pred CCccccccccccC---CCcEEcCCCCcccHHHHHHHHHhhcccc-CCCCCCCCCCccCCCCc
Q 026323 25 NGCFDCNICLDFA---YDPVVTLCGHLYCWPCIYKWLHVQSASL-ASDEHPQCPVCKADISH 82 (240)
Q Consensus 25 ~~~~~C~ICle~~---~~pv~t~CGH~FC~~CI~~wl~~~s~~~-~~~~~~~CPvCr~~v~~ 82 (240)
+.+..|-||+... ...+.+.|+|.|+..|..+.|+.+=... -.-+-..||+|+..+..
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 4567899999764 2347789999999999988877431000 00012689999998864
No 100
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=86.31 E-value=0.38 Score=43.61 Aligned_cols=43 Identities=30% Similarity=0.783 Sum_probs=34.1
Q ss_pred ccccccccccCC----CcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccC
Q 026323 27 CFDCNICLDFAY----DPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKA 78 (240)
Q Consensus 27 ~~~C~ICle~~~----~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~ 78 (240)
...||||.+.+. .+.+++|||.....|+...... + -.||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~--------~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE--------G-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhcc--------C-CCCCcccc
Confidence 455999998874 4677899999998888776652 3 99999988
No 101
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.11 E-value=0.75 Score=41.23 Aligned_cols=56 Identities=18% Similarity=0.321 Sum_probs=43.1
Q ss_pred CCccccccccccCCCc----EEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceeccCC
Q 026323 25 NGCFDCNICLDFAYDP----VVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGR 91 (240)
Q Consensus 25 ~~~~~C~ICle~~~~p----v~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~~~ 91 (240)
...|.|+|---.+..- ..-.|||+|-..-+.+.-. ..|++|.+.+..++++.+.+.
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeika-----------s~C~~C~a~y~~~dvIvlNg~ 168 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKA-----------SVCHVCGAAYQEDDVIVLNGT 168 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhhh-----------ccccccCCcccccCeEeeCCC
Confidence 4568999877666543 3349999999887766443 789999999999998887664
No 102
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=86.03 E-value=0.6 Score=43.85 Aligned_cols=40 Identities=20% Similarity=0.623 Sum_probs=27.7
Q ss_pred CCcccHHHHHHHHHhhccccCC----CCCCCCCCccCCCCcCcc
Q 026323 46 GHLYCWPCIYKWLHVQSASLAS----DEHPQCPVCKADISHTTM 85 (240)
Q Consensus 46 GH~FC~~CI~~wl~~~s~~~~~----~~~~~CPvCr~~v~~~~l 85 (240)
....|..|+-+|+..+.+.... .+...||+||+.+...|+
T Consensus 312 RPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV 355 (358)
T PF10272_consen 312 RPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV 355 (358)
T ss_pred cchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence 3445889999999865433222 255899999998865543
No 103
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.85 E-value=0.59 Score=41.98 Aligned_cols=59 Identities=20% Similarity=0.437 Sum_probs=41.8
Q ss_pred CCCCCCccccccccccCCCcEE----cCCC-----CcccHHHHHHHHHhhccccCCCCCCCCCCccCCC
Q 026323 21 SENYNGCFDCNICLDFAYDPVV----TLCG-----HLYCWPCIYKWLHVQSASLASDEHPQCPVCKADI 80 (240)
Q Consensus 21 ~~~~~~~~~C~ICle~~~~pv~----t~CG-----H~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v 80 (240)
+++.+.+-.|-||+..-+|-.. -||. |..+..|+++|++++.. ........||.|+.+.
T Consensus 14 ~~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~-~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 14 SDNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQR-GNPLQTVSCPQCQTEY 81 (293)
T ss_pred CCccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhc-CCCCceeechhhcchh
Confidence 4556677889999988766432 2553 67788999999997642 2334557899998653
No 104
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.70 E-value=1.1 Score=42.95 Aligned_cols=63 Identities=27% Similarity=0.554 Sum_probs=42.3
Q ss_pred CCccccccccccCCC-cEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCC--CccCCCCcCcceec
Q 026323 25 NGCFDCNICLDFAYD-PVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCP--VCKADISHTTMVPL 88 (240)
Q Consensus 25 ~~~~~C~ICle~~~~-pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CP--vCr~~v~~~~l~p~ 88 (240)
.....|-||.+.... .+.+.|||.||..|+..++...=....... .+|| -|.+.+..+++..+
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~-i~cp~~~C~a~v~~~~i~~~ 133 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAK-IKCPAHGCPALVGEDTVEKL 133 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeecccccc-ccCCCCCccccCCCceeeee
Confidence 445899999999885 566799999999999999885421111111 3454 56666665554443
No 105
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=84.67 E-value=0.36 Score=44.45 Aligned_cols=41 Identities=22% Similarity=0.617 Sum_probs=26.5
Q ss_pred cccccccC-CCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 30 CNICLDFA-YDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 30 C~ICle~~-~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
|.-|---+ .-...++|.|+||.+|.. ++ ..+.||.|...+.
T Consensus 93 Cd~Cd~PI~IYGRmIPCkHvFCl~CAr--~~---------~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 93 CDRCDFPIAIYGRMIPCKHVFCLECAR--SD---------SDKICPLCDDRVQ 134 (389)
T ss_pred ecccCCcceeeecccccchhhhhhhhh--cC---------ccccCcCcccHHH
Confidence 44454333 234567999999999964 22 2378999966543
No 106
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.40 E-value=0.96 Score=42.87 Aligned_cols=54 Identities=28% Similarity=0.648 Sum_probs=37.0
Q ss_pred Ccccccccc-ccCCC---cEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCC--ccCCCCc
Q 026323 26 GCFDCNICL-DFAYD---PVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPV--CKADISH 82 (240)
Q Consensus 26 ~~~~C~ICl-e~~~~---pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPv--Cr~~v~~ 82 (240)
...+|.||. +.... -.+..|+|.||..|+.+.++++ ...+....||. |...+..
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~---~~~~~~~~C~~~~C~~~l~~ 204 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK---LLSGTVIRCPHDGCESRLTL 204 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh---hccCCCccCCCCCCCccCCH
Confidence 367899999 44322 1356899999999999999866 23345577763 5555543
No 107
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.52 E-value=0.83 Score=41.64 Aligned_cols=39 Identities=28% Similarity=0.654 Sum_probs=32.5
Q ss_pred CccccccccccCCCcEEcCC----CCcccHHHHHHHHHhhccc
Q 026323 26 GCFDCNICLDFAYDPVVTLC----GHLYCWPCIYKWLHVQSAS 64 (240)
Q Consensus 26 ~~~~C~ICle~~~~pv~t~C----GH~FC~~CI~~wl~~~s~~ 64 (240)
+.+.|.+|.|.+.|--...| .|.||.+|-.+.++.+..+
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~s 309 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGAS 309 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCC
Confidence 45889999999999866666 5999999999999977533
No 108
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.34 E-value=0.9 Score=46.96 Aligned_cols=36 Identities=22% Similarity=0.472 Sum_probs=28.0
Q ss_pred CCCccccccccccC-CCc-EEcCCCCcccHHHHHHHHH
Q 026323 24 YNGCFDCNICLDFA-YDP-VVTLCGHLYCWPCIYKWLH 59 (240)
Q Consensus 24 ~~~~~~C~ICle~~-~~p-v~t~CGH~FC~~CI~~wl~ 59 (240)
.+....|.+|...+ ..| ++.+|||.|++.||.+-..
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 34567899998776 345 5669999999999987655
No 109
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.16 E-value=0.7 Score=40.19 Aligned_cols=39 Identities=23% Similarity=0.588 Sum_probs=29.6
Q ss_pred cccccccCCCcEEcCCCC-cccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 30 CNICLDFAYDPVVTLCGH-LYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 30 C~ICle~~~~pv~t~CGH-~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
|-+|.+.-..-+.+||.| .+|..|=.. ...||+|+....
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~-------------~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES-------------LRICPICRSPKT 200 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc-------------CccCCCCcChhh
Confidence 889998888767789998 458778432 377999987653
No 110
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=77.06 E-value=1.2 Score=44.93 Aligned_cols=58 Identities=19% Similarity=0.458 Sum_probs=39.6
Q ss_pred CCCCccccccccccCCCcEE-cCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcc
Q 026323 23 NYNGCFDCNICLDFAYDPVV-TLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTM 85 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~pv~-t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l 85 (240)
...-.+.|+|+.-.+.-|.. ..|.|+-|.+-.. +++. .+......||+|.+....+++
T Consensus 302 ~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~-~lq~----n~~~pTW~CPVC~~~~~~e~l 360 (636)
T KOG2169|consen 302 SLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALS-YLQM----NEQKPTWRCPVCQKAAPFEGL 360 (636)
T ss_pred cceeEecCCcccceeecCCcccccccceecchhh-hHHh----ccCCCeeeCccCCccccccch
Confidence 33456889999988887755 5899988877542 2332 234566999999887665443
No 111
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=75.92 E-value=0.68 Score=31.09 Aligned_cols=42 Identities=24% Similarity=0.681 Sum_probs=23.1
Q ss_pred ccccccccCCCcEEcCCC-CcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 29 DCNICLDFAYDPVVTLCG-HLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 29 ~C~ICle~~~~pv~t~CG-H~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
.|.-|.-.- --.+.|. |-.|..|+...+.. ...||+|+.++.
T Consensus 4 nCKsCWf~~--k~Li~C~dHYLCl~CLt~ml~~---------s~~C~iC~~~LP 46 (50)
T PF03854_consen 4 NCKSCWFAN--KGLIKCSDHYLCLNCLTLMLSR---------SDRCPICGKPLP 46 (50)
T ss_dssp ---SS-S----SSEEE-SS-EEEHHHHHHT-SS---------SSEETTTTEE--
T ss_pred cChhhhhcC--CCeeeecchhHHHHHHHHHhcc---------ccCCCcccCcCc
Confidence 344454322 2345676 88899999888873 389999998764
No 112
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=75.77 E-value=2.6 Score=43.53 Aligned_cols=55 Identities=18% Similarity=0.535 Sum_probs=40.2
Q ss_pred CCCccccccccccC--CCcEEcCCCCc-----ccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcc
Q 026323 24 YNGCFDCNICLDFA--YDPVVTLCGHL-----YCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTM 85 (240)
Q Consensus 24 ~~~~~~C~ICle~~--~~pv~t~CGH~-----FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l 85 (240)
.+++-.|-||...- .+|..-||... .+.+|+.+|+.. ++..+|-.|+.+++-+++
T Consensus 9 N~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~-------s~~~kCdiChy~~~Fk~I 70 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMEC-------SGTKKCDICHYEYKFKDI 70 (1175)
T ss_pred CccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhc-------CCCcceeeecceeeeeee
Confidence 34568899998553 56766677643 378999999983 356899999998865443
No 113
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.39 E-value=1.6 Score=39.97 Aligned_cols=42 Identities=19% Similarity=0.579 Sum_probs=28.1
Q ss_pred CCCcccHHHHHHHHHhhccccC----CCCCCCCCCccCCCCcCcce
Q 026323 45 CGHLYCWPCIYKWLHVQSASLA----SDEHPQCPVCKADISHTTMV 86 (240)
Q Consensus 45 CGH~FC~~CI~~wl~~~s~~~~----~~~~~~CPvCr~~v~~~~l~ 86 (240)
|....|.+|+-+|+..+.+... ..+..+||.||+.+...|+.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv~ 370 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDVH 370 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeeee
Confidence 5556688999999874431111 13568999999988765543
No 114
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=72.81 E-value=2.2 Score=43.85 Aligned_cols=52 Identities=13% Similarity=0.110 Sum_probs=35.7
Q ss_pred CccccccccccCCCcEE----c---CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCC
Q 026323 26 GCFDCNICLDFAYDPVV----T---LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADI 80 (240)
Q Consensus 26 ~~~~C~ICle~~~~pv~----t---~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v 80 (240)
+...|.||...+.+++- . .|+|.+|..||..|.+.- .....+..|+.|..-|
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL---~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQL---EESEKHTAHYFCEECV 153 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHh---hccccccccccHHHHh
Confidence 45677888777766322 2 499999999999999842 2223446778887655
No 115
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=71.97 E-value=4 Score=31.71 Aligned_cols=34 Identities=18% Similarity=0.450 Sum_probs=24.1
Q ss_pred CCcccHHHHHHHHHhhccccCCCCCCCCCCccCC
Q 026323 46 GHLYCWPCIYKWLHVQSASLASDEHPQCPVCKAD 79 (240)
Q Consensus 46 GH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~ 79 (240)
.-.||..||..+..........+....||.|+..
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 6679999999988743211223456899999864
No 116
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=70.65 E-value=6.8 Score=25.99 Aligned_cols=13 Identities=38% Similarity=1.101 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhh
Q 026323 227 IFLFCCFLLCLIV 239 (240)
Q Consensus 227 ~f~~~~~~l~l~~ 239 (240)
|.=||++++||||
T Consensus 32 fvnfcliliclll 44 (52)
T PF04272_consen 32 FVNFCLILICLLL 44 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3345555556543
No 117
>CHL00038 psbL photosystem II protein L
Probab=68.77 E-value=4.2 Score=25.71 Aligned_cols=17 Identities=29% Similarity=0.473 Sum_probs=12.9
Q ss_pred hhhHHHHHHHHHHHHHH
Q 026323 221 SLNRISIFLFCCFLLCL 237 (240)
Q Consensus 221 ~l~~~~~f~~~~~~l~l 237 (240)
-|+|-+++++.+.|.+|
T Consensus 12 ELNRTSLy~GLLlifvl 28 (38)
T CHL00038 12 ELNRTSLYWGLLLIFVL 28 (38)
T ss_pred chhhhhHHHHHHHHHHH
Confidence 57888888877777666
No 118
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.26 E-value=4.1 Score=29.79 Aligned_cols=32 Identities=25% Similarity=0.638 Sum_probs=24.6
Q ss_pred CCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceec
Q 026323 46 GHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPL 88 (240)
Q Consensus 46 GH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~ 88 (240)
.++||..|....|+ ..||-|...+....++|.
T Consensus 28 EcTFCadCae~~l~-----------g~CPnCGGelv~RP~RPa 59 (84)
T COG3813 28 ECTFCADCAENRLH-----------GLCPNCGGELVARPIRPA 59 (84)
T ss_pred eeehhHhHHHHhhc-----------CcCCCCCchhhcCcCChH
Confidence 47899999998887 889999877655444443
No 119
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.12 E-value=0.69 Score=43.81 Aligned_cols=47 Identities=23% Similarity=0.615 Sum_probs=38.2
Q ss_pred cccccccccCCCc----EEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcC
Q 026323 28 FDCNICLDFAYDP----VVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHT 83 (240)
Q Consensus 28 ~~C~ICle~~~~p----v~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~ 83 (240)
-.|.||.+.+++- ..+-|||.+...||.+||... .+||.|+..+...
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~---------~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATK---------RKLPSCRRELPKN 247 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH---------HHhHHHHhhhhhh
Confidence 4689999887643 345799999999999999975 7899999887643
No 120
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=62.16 E-value=2 Score=38.41 Aligned_cols=47 Identities=23% Similarity=0.533 Sum_probs=33.9
Q ss_pred CccccccccccC-CCc-EE-c---CCCCcccHHHHHHHHHhhccccCCCCCCCCC--CccCCC
Q 026323 26 GCFDCNICLDFA-YDP-VV-T---LCGHLYCWPCIYKWLHVQSASLASDEHPQCP--VCKADI 80 (240)
Q Consensus 26 ~~~~C~ICle~~-~~p-v~-t---~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CP--vCr~~v 80 (240)
.+-.||||...- -.| +. + .|=|..|-.|+.+.+... ...|| -|.+-+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~G--------pAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRG--------PAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCC--------CCCCCCccHHHHH
Confidence 356899999653 344 22 2 499999999999998854 48899 775433
No 121
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.19 E-value=1.6 Score=41.33 Aligned_cols=34 Identities=24% Similarity=0.571 Sum_probs=23.2
Q ss_pred ccccccccccCC---Cc--EEcCCCCcccHHHHHHHHHh
Q 026323 27 CFDCNICLDFAY---DP--VVTLCGHLYCWPCIYKWLHV 60 (240)
Q Consensus 27 ~~~C~ICle~~~---~p--v~t~CGH~FC~~CI~~wl~~ 60 (240)
..+|++|.-.+. .- ++=.|||-|||.|...|...
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~ 344 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTH 344 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhC
Confidence 456777665543 22 22249999999999998773
No 122
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=59.05 E-value=6.1 Score=28.31 Aligned_cols=14 Identities=29% Similarity=0.904 Sum_probs=10.1
Q ss_pred cccHHHHHHHHHhh
Q 026323 48 LYCWPCIYKWLHVQ 61 (240)
Q Consensus 48 ~FC~~CI~~wl~~~ 61 (240)
.||..||.+|....
T Consensus 11 gFCRNCLskWy~~a 24 (68)
T PF06844_consen 11 GFCRNCLSKWYREA 24 (68)
T ss_dssp S--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 49999999999854
No 123
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=56.38 E-value=13 Score=27.47 Aligned_cols=48 Identities=27% Similarity=0.510 Sum_probs=20.1
Q ss_pred CccccccccccCC-----CcEEc--CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 26 GCFDCNICLDFAY-----DPVVT--LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 26 ~~~~C~ICle~~~-----~pv~t--~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
..-.|.||-|.+- ++.+. .|+-..|.+|..-=.+ .+...||.|+...+
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErk--------eg~q~CpqCkt~yk 62 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERK--------EGNQVCPQCKTRYK 62 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHH--------TS-SB-TTT--B--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhh--------cCcccccccCCCcc
Confidence 3567999999873 23332 7888889999864444 24589999996654
No 124
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=54.06 E-value=11 Score=23.95 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHHHHHHH
Q 026323 221 SLNRISIFLFCCFLLCL 237 (240)
Q Consensus 221 ~l~~~~~f~~~~~~l~l 237 (240)
-|+|-+++++.+.|.-|
T Consensus 13 ELNRTSLy~GlLlifvl 29 (39)
T PRK00753 13 ELNRTSLYLGLLLVFVL 29 (39)
T ss_pred eechhhHHHHHHHHHHH
Confidence 58888888877766655
No 125
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=53.06 E-value=13 Score=25.81 Aligned_cols=42 Identities=21% Similarity=0.593 Sum_probs=28.1
Q ss_pred ccccccccCCC-c-EEcCCC--CcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 29 DCNICLDFAYD-P-VVTLCG--HLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 29 ~C~ICle~~~~-p-v~t~CG--H~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
.|-.|-..+.. . ...-|. .+||..|....|+ ..||-|...+.
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~-----------~~CPNCgGelv 52 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLN-----------GVCPNCGGELV 52 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc-----------CcCcCCCCccc
Confidence 45666655522 1 223343 4799999999887 88999987664
No 126
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=52.88 E-value=14 Score=25.49 Aligned_cols=29 Identities=28% Similarity=0.499 Sum_probs=23.5
Q ss_pred ccccccccccC--CCcEEc--CCCCcccHHHHH
Q 026323 27 CFDCNICLDFA--YDPVVT--LCGHLYCWPCIY 55 (240)
Q Consensus 27 ~~~C~ICle~~--~~pv~t--~CGH~FC~~CI~ 55 (240)
...|++|-+.+ .+.++. .||-.|++.|..
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 46799999999 566554 899999999953
No 127
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=52.41 E-value=23 Score=26.37 Aligned_cols=27 Identities=19% Similarity=0.360 Sum_probs=16.5
Q ss_pred hhhHhHHHHHhhhHHHHHHHHHHHHHHh
Q 026323 211 LRRHEMQAVKSLNRISIFLFCCFLLCLI 238 (240)
Q Consensus 211 ~~~~~~q~~~~l~~~~~f~~~~~~l~l~ 238 (240)
+.|++.. |+.+=...|++|+++++..+
T Consensus 62 l~r~~~~-D~~li~~~~~~f~~~v~yI~ 88 (92)
T PF03908_consen 62 LERRDKT-DRILIFFAFLFFLLVVLYIL 88 (92)
T ss_pred HHHHHHH-hHHHHHHHHHHHHHHHHHHh
Confidence 3444443 77776666666666666554
No 128
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=51.25 E-value=8 Score=33.94 Aligned_cols=43 Identities=26% Similarity=0.613 Sum_probs=33.6
Q ss_pred CccccccccccCCCcEE-cCCCCcccHHHHHHHHHhhccccCCCCCCCCCCcc
Q 026323 26 GCFDCNICLDFAYDPVV-TLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCK 77 (240)
Q Consensus 26 ~~~~C~ICle~~~~pv~-t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr 77 (240)
.-..|++|..++...+. -.||--+...|+..+++. ...||.|.
T Consensus 180 nlk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~---------~~~cphc~ 223 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR---------RDICPHCG 223 (235)
T ss_pred HHHHHhHhHHHhheeeccCcccchhhhHHHHHHhcc---------cCcCCchh
Confidence 34679999999876543 367777889999999984 37899994
No 129
>PF15616 TerY-C: TerY-C metal binding domain
Probab=51.23 E-value=6 Score=32.06 Aligned_cols=47 Identities=26% Similarity=0.521 Sum_probs=33.5
Q ss_pred CCCCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026323 21 SENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 21 ~~~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
++++.+.-.||-|-....-.+- .||+++|+. ..+...||-|......
T Consensus 71 tseL~g~PgCP~CGn~~~fa~C-~CGkl~Ci~--------------g~~~~~CPwCg~~g~~ 117 (131)
T PF15616_consen 71 TSELIGAPGCPHCGNQYAFAVC-GCGKLFCID--------------GEGEVTCPWCGNEGSF 117 (131)
T ss_pred hHHhcCCCCCCCCcChhcEEEe-cCCCEEEeC--------------CCCCEECCCCCCeeee
Confidence 3455566889999987654444 899999963 1245899999877643
No 130
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.87 E-value=13 Score=37.76 Aligned_cols=51 Identities=24% Similarity=0.521 Sum_probs=37.4
Q ss_pred ccccccccCCCcEEcCCCC-cccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026323 29 DCNICLDFAYDPVVTLCGH-LYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 29 ~C~ICle~~~~pv~t~CGH-~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
.|.||-....-...-.||| ..|..|..+...... .......||+|+..+..
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~---~~~~~~~~~vcr~~~~~ 53 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELN---NRKCSNECPVCRREVET 53 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcc---cccccccCcccccceee
Confidence 5899988888777779999 889999987765431 11234778999886644
No 131
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.45 E-value=3.1 Score=37.37 Aligned_cols=45 Identities=31% Similarity=0.554 Sum_probs=35.0
Q ss_pred ccccccccccCC------CcEEcC--------CCCcccHHHHHHHHHhhccccCCCCCCCCCCccCC
Q 026323 27 CFDCNICLDFAY------DPVVTL--------CGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKAD 79 (240)
Q Consensus 27 ~~~C~ICle~~~------~pv~t~--------CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~ 79 (240)
...|.||..... .|.++. |||..|..|+..-+.... ..||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~--------~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAG--------IKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhh--------hcCCcccce
Confidence 467999987765 245555 999999999999887542 789999864
No 132
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=50.25 E-value=13 Score=34.65 Aligned_cols=45 Identities=24% Similarity=0.507 Sum_probs=32.8
Q ss_pred ccccccccccCC--CcEE--cCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCC
Q 026323 27 CFDCNICLDFAY--DPVV--TLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADI 80 (240)
Q Consensus 27 ~~~C~ICle~~~--~pv~--t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v 80 (240)
.-.|+||.+... +... .+||+..|+.|+..... ....||.|++..
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~---------~~~~~~~~rk~~ 297 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISD---------GDGRCPGCRKPY 297 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccc---------cCCCCCccCCcc
Confidence 367999999763 2222 37999999999876655 458999999443
No 133
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=50.16 E-value=9.5 Score=34.04 Aligned_cols=49 Identities=20% Similarity=0.559 Sum_probs=35.8
Q ss_pred ccccccccccCCC----cEEcCCCC-----cccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026323 27 CFDCNICLDFAYD----PVVTLCGH-----LYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 27 ~~~C~ICle~~~~----pv~t~CGH-----~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
...|-||.+...+ +...+|.- ..+..|+..|+... +...|.+|+.....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~-------~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIK-------GNITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccc-------cCeeeeccccccee
Confidence 4779999987643 45666652 34789999999843 45899999876644
No 134
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=49.35 E-value=8.9 Score=22.30 Aligned_cols=8 Identities=25% Similarity=0.455 Sum_probs=4.4
Q ss_pred cccccccC
Q 026323 30 CNICLDFA 37 (240)
Q Consensus 30 C~ICle~~ 37 (240)
||-|...+
T Consensus 3 CP~C~~~V 10 (26)
T PF10571_consen 3 CPECGAEV 10 (26)
T ss_pred CCCCcCCc
Confidence 55555554
No 135
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=48.99 E-value=30 Score=22.97 Aligned_cols=11 Identities=45% Similarity=1.268 Sum_probs=5.4
Q ss_pred HHHHHHHHHhh
Q 026323 229 LFCCFLLCLIV 239 (240)
Q Consensus 229 ~~~~~~l~l~~ 239 (240)
=||++++||||
T Consensus 34 nf~liliclll 44 (52)
T TIGR01294 34 NFCLILICLLL 44 (52)
T ss_pred HHHHHHHHHHH
Confidence 34555555543
No 136
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=48.71 E-value=4.8 Score=36.38 Aligned_cols=45 Identities=27% Similarity=0.465 Sum_probs=23.3
Q ss_pred CccccccccccCCCcEEcCC---C--CcccHHHHHHHHHhhccccCCCCCCCCCCccCC
Q 026323 26 GCFDCNICLDFAYDPVVTLC---G--HLYCWPCIYKWLHVQSASLASDEHPQCPVCKAD 79 (240)
Q Consensus 26 ~~~~C~ICle~~~~pv~t~C---G--H~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~ 79 (240)
..-.||||-....-.++..= | +.+|.-|-..|-..+ ..||.|...
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R---------~~Cp~Cg~~ 220 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVR---------IKCPYCGNT 220 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE--T---------TS-TTT---
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecC---------CCCcCCCCC
Confidence 34789999998766655433 3 688999999997754 799999654
No 137
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=48.03 E-value=7 Score=36.12 Aligned_cols=45 Identities=27% Similarity=0.547 Sum_probs=34.1
Q ss_pred CCccccccccccCCCcEEc---CCC--CcccHHHHHHHHHhhccccCCCCCCCCCCccC
Q 026323 25 NGCFDCNICLDFAYDPVVT---LCG--HLYCWPCIYKWLHVQSASLASDEHPQCPVCKA 78 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~t---~CG--H~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~ 78 (240)
...-.||+|-....-.++. .=| +.+|.-|-..|-..+ .+||.|..
T Consensus 185 ~~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R---------~~C~~Cg~ 234 (309)
T PRK03564 185 EQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVR---------VKCSNCEQ 234 (309)
T ss_pred cCCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccC---------ccCCCCCC
Confidence 3568899999987655442 233 577999999998854 89999975
No 138
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=47.87 E-value=11 Score=38.81 Aligned_cols=34 Identities=26% Similarity=0.698 Sum_probs=24.0
Q ss_pred cccccccccCCCc--EEcCCCCcccHHHHHHHHHhh
Q 026323 28 FDCNICLDFAYDP--VVTLCGHLYCWPCIYKWLHVQ 61 (240)
Q Consensus 28 ~~C~ICle~~~~p--v~t~CGH~FC~~CI~~wl~~~ 61 (240)
+.|+||--.++.. +...|||..+..|...|+..+
T Consensus 1029 ~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~g 1064 (1081)
T KOG0309|consen 1029 FQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTG 1064 (1081)
T ss_pred eeeeeEeeEeeccchhhccccccccHHHHHHHHhcC
Confidence 4466655444332 334899999999999999965
No 139
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=47.16 E-value=7.5 Score=35.85 Aligned_cols=45 Identities=24% Similarity=0.503 Sum_probs=33.7
Q ss_pred CccccccccccCCCcEEcC----CC--CcccHHHHHHHHHhhccccCCCCCCCCCCccCC
Q 026323 26 GCFDCNICLDFAYDPVVTL----CG--HLYCWPCIYKWLHVQSASLASDEHPQCPVCKAD 79 (240)
Q Consensus 26 ~~~~C~ICle~~~~pv~t~----CG--H~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~ 79 (240)
..-.||||-....-.++.. =| +.+|.-|-..|-..+ .+||.|...
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R---------~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVR---------VKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccC---------ccCCCCCCC
Confidence 3558999999876554432 33 677999999998754 899999763
No 140
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=46.39 E-value=30 Score=33.60 Aligned_cols=55 Identities=20% Similarity=0.358 Sum_probs=47.4
Q ss_pred ccccccccCCCcEEc-CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceeccCCC
Q 026323 29 DCNICLDFAYDPVVT-LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGRG 92 (240)
Q Consensus 29 ~C~ICle~~~~pv~t-~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~~~g 92 (240)
.|.|--+..++||+- .-||+|-..-|.+++... .+||+-..+++.++++++-...
T Consensus 2 ~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~---------G~DPIt~~pLs~eelV~Ik~~~ 57 (506)
T KOG0289|consen 2 VCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAET---------GKDPITNEPLSIEELVEIKVPA 57 (506)
T ss_pred eecccCCCCCCccccccccchHHHHHHHHHHHHc---------CCCCCCCCcCCHHHeeeccccc
Confidence 599999999999885 689999999999999843 8999999999999998874433
No 141
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=46.22 E-value=0.78 Score=33.23 Aligned_cols=41 Identities=22% Similarity=0.435 Sum_probs=22.3
Q ss_pred ccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 27 CFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 27 ~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
+..||.|...+..- =|+.+|..|-..+.. ...||.|..++.
T Consensus 1 e~~CP~C~~~L~~~----~~~~~C~~C~~~~~~----------~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEWQ----GGHYHCEACQKDYKK----------EAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEEE----TTEEEETTT--EEEE----------EEE-TTT-SB-E
T ss_pred CCcCCCCCCccEEe----CCEEECcccccccee----------cccCCCcccHHH
Confidence 35799999875432 178888888765443 278999988775
No 142
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=45.98 E-value=57 Score=33.83 Aligned_cols=14 Identities=43% Similarity=0.907 Sum_probs=11.6
Q ss_pred CCCCCCCccCCCCc
Q 026323 69 EHPQCPVCKADISH 82 (240)
Q Consensus 69 ~~~~CPvCr~~v~~ 82 (240)
....||-|++.++.
T Consensus 308 KPfeCpnCkKRFSH 321 (1007)
T KOG3623|consen 308 KPFECPNCKKRFSH 321 (1007)
T ss_pred CCcCCccccccccc
Confidence 44899999998875
No 143
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.93 E-value=21 Score=34.29 Aligned_cols=46 Identities=24% Similarity=0.447 Sum_probs=28.1
Q ss_pred CCcEEcCCCCcccHHHHHHHHH------------hhccc-cC----CCCCCCCCCccCCCCcC
Q 026323 38 YDPVVTLCGHLYCWPCIYKWLH------------VQSAS-LA----SDEHPQCPVCKADISHT 83 (240)
Q Consensus 38 ~~pv~t~CGH~FC~~CI~~wl~------------~~s~~-~~----~~~~~~CPvCr~~v~~~ 83 (240)
..+|.=.|||.|||.|...|-. ...+. +. ..+...||.|..++..+
T Consensus 177 ~~~v~C~~g~~FC~~C~~~~H~p~~C~~~~~wl~k~~~~se~~~wi~~ntk~CP~c~~~iek~ 239 (444)
T KOG1815|consen 177 SVEVDCGCGHEFCFACGEESHSPVSCPGAKKWLKKCRDDSETINWILANTKECPKCKVPIEKD 239 (444)
T ss_pred ccceeCCCCchhHhhccccccCCCcccchHHHHHhhhhhhhhhhhhhccCccCCCcccchhcc
Confidence 3346668999999999865533 21111 00 23446799998877543
No 144
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.60 E-value=8.5 Score=38.00 Aligned_cols=47 Identities=30% Similarity=0.622 Sum_probs=36.8
Q ss_pred CCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcC
Q 026323 24 YNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHT 83 (240)
Q Consensus 24 ~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~ 83 (240)
.+....|.||++.. ...+++|. ...|+.+|+..+ ..||.|...+..+
T Consensus 476 ~~~~~~~~~~~~~~-~~~~~~~~---~~~~l~~~~~~~---------~~~pl~~~~~~~~ 522 (543)
T KOG0802|consen 476 REPNDVCAICYQEM-SARITPCS---HALCLRKWLYVQ---------EVCPLCHTYMKED 522 (543)
T ss_pred hcccCcchHHHHHH-Hhcccccc---chhHHHhhhhhc---------cccCCCchhhhcc
Confidence 34567899999999 66677887 468889999876 7899998876544
No 145
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=45.52 E-value=23 Score=34.28 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=21.6
Q ss_pred hhHhHHHHHhhhHHHHHHHHHHHHHHh
Q 026323 212 RRHEMQAVKSLNRISIFLFCCFLLCLI 238 (240)
Q Consensus 212 ~~~~~q~~~~l~~~~~f~~~~~~l~l~ 238 (240)
-|+.+|++++|+|+++|+++-.++..+
T Consensus 71 ~~~~~~~~~~~~rl~~~VllPtlla~~ 97 (434)
T PRK15178 71 ERRVQQAKQSLRRLFLYIALPLLVIML 97 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466789999999999888877777553
No 146
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=42.70 E-value=12 Score=33.72 Aligned_cols=45 Identities=27% Similarity=0.396 Sum_probs=34.8
Q ss_pred ccccccccccCCCcEE-cCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccC
Q 026323 27 CFDCNICLDFAYDPVV-TLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKA 78 (240)
Q Consensus 27 ~~~C~ICle~~~~pv~-t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~ 78 (240)
.+.|||=...+..|++ ..|||.|-..-|...+... ....||+-..
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~-------~~i~CPv~gC 221 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDE-------ITIRCPVLGC 221 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccC-------ceeecccccC
Confidence 4789998888888876 5999999999998888732 2367886543
No 147
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.23 E-value=21 Score=29.26 Aligned_cols=51 Identities=22% Similarity=0.411 Sum_probs=28.7
Q ss_pred CCCcccccccccc-CCCcEEcCCCCcccHHHHHHHHHhh---ccccCCCCCCCCCCccCC
Q 026323 24 YNGCFDCNICLDF-AYDPVVTLCGHLYCWPCIYKWLHVQ---SASLASDEHPQCPVCKAD 79 (240)
Q Consensus 24 ~~~~~~C~ICle~-~~~pv~t~CGH~FC~~CI~~wl~~~---s~~~~~~~~~~CPvCr~~ 79 (240)
..++-.|-||+.. +.| -|||. |..|-.+....- ..+.++.....|-.|+..
T Consensus 62 v~ddatC~IC~KTKFAD----G~GH~-C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 62 VGDDATCGICHKTKFAD----GCGHN-CSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred cCcCcchhhhhhccccc----ccCcc-cchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 3567889999875 333 48885 666765544311 111123334567777654
No 148
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=41.78 E-value=6.3 Score=27.48 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=16.1
Q ss_pred CccccccccccCCCc--EE--cCCCCcccHHHHHHH
Q 026323 26 GCFDCNICLDFAYDP--VV--TLCGHLYCWPCIYKW 57 (240)
Q Consensus 26 ~~~~C~ICle~~~~p--v~--t~CGH~FC~~CI~~w 57 (240)
+...|.+|...|.-- .. -.||++||..|....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 456799999988432 11 379999999997543
No 149
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=40.61 E-value=21 Score=24.19 Aligned_cols=25 Identities=28% Similarity=0.857 Sum_probs=13.4
Q ss_pred CCCCcccHHHHHHHHHhhccccCCCCCCCCCCcc
Q 026323 44 LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCK 77 (240)
Q Consensus 44 ~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr 77 (240)
.|++.||.+|= .+++. .-..||-|.
T Consensus 26 ~C~~~FC~dCD-~fiHE--------~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDCD-VFIHE--------TLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHHH-HTTTT--------TS-SSSTT-
T ss_pred CCCCccccCcC-hhhhc--------cccCCcCCC
Confidence 79999999994 23332 237899884
No 150
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=39.84 E-value=19 Score=24.12 Aligned_cols=12 Identities=58% Similarity=1.361 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHh
Q 026323 227 IFLFCCFLLCLI 238 (240)
Q Consensus 227 ~f~~~~~~l~l~ 238 (240)
-||.|+++.||.
T Consensus 14 ~~lIC~Fl~~~~ 25 (54)
T PF06716_consen 14 GFLICLFLFCLV 25 (54)
T ss_pred HHHHHHHHHHHH
Confidence 345555666653
No 151
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=39.21 E-value=5 Score=27.10 Aligned_cols=15 Identities=33% Similarity=1.178 Sum_probs=13.2
Q ss_pred CCCCcccHHHHHHHH
Q 026323 44 LCGHLYCWPCIYKWL 58 (240)
Q Consensus 44 ~CGH~FC~~CI~~wl 58 (240)
.||+.||+.|...|-
T Consensus 45 ~C~~~fC~~C~~~~H 59 (64)
T smart00647 45 KCGFSFCFRCKVPWH 59 (64)
T ss_pred CCCCeECCCCCCcCC
Confidence 699999999988874
No 152
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=37.10 E-value=11 Score=35.89 Aligned_cols=50 Identities=24% Similarity=0.505 Sum_probs=0.0
Q ss_pred CccccccccccCCC-------------c-EEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 26 GCFDCNICLDFAYD-------------P-VVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 26 ~~~~C~ICle~~~~-------------p-v~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
....||+=+..+.- | |-+.|||++-+ ..|-.... .......||.|+..-.
T Consensus 276 ~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~---h~Wg~~~~---~~~~~r~CPlCr~~g~ 339 (416)
T PF04710_consen 276 GRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGY---HNWGQDSD---RDPRSRTCPLCRQVGP 339 (416)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cCCCCCcCCCccccccccccccccccCceeeccccceeee---cccccccc---cccccccCCCccccCC
Confidence 45778887665532 2 45689998766 36765321 1123689999987653
No 153
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=36.77 E-value=11 Score=35.84 Aligned_cols=56 Identities=21% Similarity=0.539 Sum_probs=0.0
Q ss_pred CccccccccccC--------------CC---c--EEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 26 GCFDCNICLDFA--------------YD---P--VVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 26 ~~~~C~ICle~~--------------~~---p--v~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
..-+|++|+..- .| | ...||||.---+...-|-+..-+-....-+..||.|-..+.
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 367899999542 11 2 22389998666677777663311111123479999988775
No 155
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=36.13 E-value=47 Score=31.05 Aligned_cols=59 Identities=20% Similarity=0.493 Sum_probs=33.3
Q ss_pred CCCCccccccccccCC--------------C---c--EEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 23 NYNGCFDCNICLDFAY--------------D---P--VVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~--------------~---p--v~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
....+-+||+|+..-. | | ...+|||.--.+=..-|-+..-+-....-+..||.|-..+.
T Consensus 337 ~g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 337 TGQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred cCcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 3345788999996521 1 1 12389997444444455442211111223578999987664
No 156
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=35.86 E-value=32 Score=21.53 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=17.3
Q ss_pred HHhhhHHHHHHHHHHHHHHhh
Q 026323 219 VKSLNRISIFLFCCFLLCLIV 239 (240)
Q Consensus 219 ~~~l~~~~~f~~~~~~l~l~~ 239 (240)
|.-|+++.++|+++.++..++
T Consensus 4 D~qL~~lan~lG~~~~~LIVl 24 (35)
T PF10215_consen 4 DVQLYTLANFLGVAAMVLIVL 24 (35)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 677999999999988876654
No 157
>PLN02189 cellulose synthase
Probab=35.09 E-value=28 Score=37.15 Aligned_cols=47 Identities=32% Similarity=0.650 Sum_probs=33.1
Q ss_pred ccccccccccCC-----CcEE--cCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 27 CFDCNICLDFAY-----DPVV--TLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 27 ~~~C~ICle~~~-----~pv~--t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
.-.|.||-|.+. ++-+ -.|+--.|.+|.. +-. ..+...||.||...+
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cye-yer-------~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYE-YER-------REGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhh-hhh-------hcCCccCcccCCchh
Confidence 348999999874 2322 2588888999983 222 235689999998776
No 158
>PLN02436 cellulose synthase A
Probab=34.93 E-value=28 Score=37.31 Aligned_cols=47 Identities=30% Similarity=0.695 Sum_probs=33.1
Q ss_pred ccccccccccCC-----CcEE--cCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 27 CFDCNICLDFAY-----DPVV--TLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 27 ~~~C~ICle~~~-----~pv~--t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
.-.|.||-|.+. ++-+ -.|+--.|.+|.. +-. ..+...||.||...+
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cye-yer-------~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYE-YER-------REGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhh-hhh-------hcCCccCcccCCchh
Confidence 358999999873 2322 2688889999983 222 235689999998765
No 159
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=34.89 E-value=22 Score=33.77 Aligned_cols=32 Identities=34% Similarity=0.675 Sum_probs=25.5
Q ss_pred CCCcccccccc-ccCCCcEEcCCCCcccHHHHH
Q 026323 24 YNGCFDCNICL-DFAYDPVVTLCGHLYCWPCIY 55 (240)
Q Consensus 24 ~~~~~~C~ICl-e~~~~pv~t~CGH~FC~~CI~ 55 (240)
..+...|.=|- .....-..++||..||..||.
T Consensus 36 ~~gk~~C~RC~~~~~~~~~~lp~~~~YCr~Cl~ 68 (441)
T COG4098 36 ENGKYRCNRCGNTHIELFAKLPCGCLYCRNCLM 68 (441)
T ss_pred ccCcEEehhcCCcchhhhcccccceEeehhhhh
Confidence 34568899888 555666788999999999984
No 160
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.47 E-value=21 Score=27.26 Aligned_cols=14 Identities=21% Similarity=0.847 Sum_probs=12.3
Q ss_pred cccHHHHHHHHHhh
Q 026323 48 LYCWPCIYKWLHVQ 61 (240)
Q Consensus 48 ~FC~~CI~~wl~~~ 61 (240)
.||..|+..|.+..
T Consensus 42 gFCRNCLs~Wy~ea 55 (104)
T COG3492 42 GFCRNCLSNWYREA 55 (104)
T ss_pred HHHHHHHHHHHHHH
Confidence 49999999999965
No 161
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=34.34 E-value=19 Score=22.70 Aligned_cols=17 Identities=29% Similarity=0.473 Sum_probs=9.5
Q ss_pred hhhHHHHHHHHHHHHHH
Q 026323 221 SLNRISIFLFCCFLLCL 237 (240)
Q Consensus 221 ~l~~~~~f~~~~~~l~l 237 (240)
-|+|-+++++.+.|.-|
T Consensus 11 ELNRTSLY~GLllifvl 27 (37)
T PF02419_consen 11 ELNRTSLYWGLLLIFVL 27 (37)
T ss_dssp E--CCHHHHHHHHHHHH
T ss_pred chhHHhHHHHHHHHHHH
Confidence 57777777766655544
No 162
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=33.29 E-value=37 Score=19.95 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=13.9
Q ss_pred ccccccccCCCc--EEcCCCCcccHHH
Q 026323 29 DCNICLDFAYDP--VVTLCGHLYCWPC 53 (240)
Q Consensus 29 ~C~ICle~~~~p--v~t~CGH~FC~~C 53 (240)
.|..|.+.+.+. ++..=+..|+..|
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~C 27 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPEC 27 (39)
T ss_pred CccccCCcccCCcEEEEeCCccccccC
Confidence 377788777653 3333345555544
No 163
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=33.24 E-value=27 Score=30.64 Aligned_cols=16 Identities=31% Similarity=0.758 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhhC
Q 026323 225 ISIFLFCCFLLCLIVF 240 (240)
Q Consensus 225 ~~~f~~~~~~l~l~~f 240 (240)
.+|.+.++|++|-|||
T Consensus 133 ClIIIAVLfLICT~Lf 148 (227)
T PF05399_consen 133 CLIIIAVLFLICTLLF 148 (227)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566778888888887
No 164
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=33.09 E-value=32 Score=30.44 Aligned_cols=23 Identities=35% Similarity=0.833 Sum_probs=17.3
Q ss_pred cHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 50 CWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 50 C~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
|..|....-. +.+.||+||+...
T Consensus 197 C~sC~qqIHR---------NAPiCPlCK~KsR 219 (230)
T PF10146_consen 197 CQSCHQQIHR---------NAPICPLCKAKSR 219 (230)
T ss_pred hHhHHHHHhc---------CCCCCcccccccc
Confidence 8889876554 4599999997653
No 165
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.40 E-value=9.7 Score=36.90 Aligned_cols=38 Identities=21% Similarity=0.502 Sum_probs=30.4
Q ss_pred CCCCCccccccc-cccCCCcEEc--CCCCcccHHHHHHHHH
Q 026323 22 ENYNGCFDCNIC-LDFAYDPVVT--LCGHLYCWPCIYKWLH 59 (240)
Q Consensus 22 ~~~~~~~~C~IC-le~~~~pv~t--~CGH~FC~~CI~~wl~ 59 (240)
-...++..|.+| .+.+.+..++ -|.-.+|..||..-+.
T Consensus 214 ~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~ 254 (448)
T KOG0314|consen 214 GELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALI 254 (448)
T ss_pred ccCCccccCceecchhhHHHHHhhhhhcccCCccccccccc
Confidence 355678999999 7777777665 6889999999987665
No 166
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.69 E-value=26 Score=33.62 Aligned_cols=32 Identities=25% Similarity=0.623 Sum_probs=24.3
Q ss_pred CCccccccccccCCCc------EEcCCCCcccHHHHHH
Q 026323 25 NGCFDCNICLDFAYDP------VVTLCGHLYCWPCIYK 56 (240)
Q Consensus 25 ~~~~~C~ICle~~~~p------v~t~CGH~FC~~CI~~ 56 (240)
+..-.||-|.-.+... .-+.|||.|||.|-..
T Consensus 366 ~N~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~ 403 (445)
T KOG1814|consen 366 SNSKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAEL 403 (445)
T ss_pred hcCCCCCcccceeecCCCccceeeccccccceeehhhh
Confidence 4557799998877543 4578999999999754
No 167
>PF12132 DUF3587: Protein of unknown function (DUF3587); InterPro: IPR021982 This entry is represented by Hyposoter fugitivus ichnovirus, Gp7; it is a family of uncharacterised viral proteins.
Probab=31.05 E-value=33 Score=29.72 Aligned_cols=24 Identities=33% Similarity=0.715 Sum_probs=18.4
Q ss_pred cCCCcEEcCCC----CcccHHHHHHHHH
Q 026323 36 FAYDPVVTLCG----HLYCWPCIYKWLH 59 (240)
Q Consensus 36 ~~~~pv~t~CG----H~FC~~CI~~wl~ 59 (240)
.+.+|....|. |.||+.++..||.
T Consensus 150 ~f~~p~~~~C~~gHfHHyCs~HV~~WL~ 177 (199)
T PF12132_consen 150 KFVKPSVDECEYGHFHHYCSQHVNSWLN 177 (199)
T ss_pred cccCCCCCCCCCCCcChhhHHHHHHHHH
Confidence 34556556665 7899999999998
No 168
>PF08525 OapA_N: Opacity-associated protein A N-terminal motif; InterPro: IPR013731 This domain is found in the Haemophilus influenzae opacity-associated protein (OapA). It is required for efficient nasopharyngeal mucosal colonisation, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [, ]. This motif occurs at the N terminus of these proteins. It contains a conserved histidine followed by a run of hydrophobic residues. Many of the proteins in this entry are unassigned peptidases belonging to MEROPS peptidase family M23B.
Probab=30.36 E-value=70 Score=19.09 Aligned_cols=18 Identities=22% Similarity=0.525 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 026323 222 LNRISIFLFCCFLLCLIV 239 (240)
Q Consensus 222 l~~~~~f~~~~~~l~l~~ 239 (240)
++|+.+.++..+++-+++
T Consensus 9 ~Hr~~l~~l~~v~l~ll~ 26 (30)
T PF08525_consen 9 LHRRALIALSAVVLVLLL 26 (30)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 355556555555555554
No 169
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=28.70 E-value=43 Score=36.01 Aligned_cols=47 Identities=32% Similarity=0.731 Sum_probs=33.3
Q ss_pred ccccccccccCC-----CcEE--cCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 27 CFDCNICLDFAY-----DPVV--TLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 27 ~~~C~ICle~~~-----~pv~--t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
.-.|.||-|.+. ++-+ -.||--.|.+|.. +=. ..+...||.||...+
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYE-YEr-------~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYE-YER-------KDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhh-hhh-------hcCCccCCccCCchh
Confidence 458999999873 2333 2788889999983 222 235699999998765
No 170
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=27.85 E-value=40 Score=30.03 Aligned_cols=22 Identities=36% Similarity=0.904 Sum_probs=16.5
Q ss_pred cHHHHHHHHHhhccccCCCCCCCCCCccCCC
Q 026323 50 CWPCIYKWLHVQSASLASDEHPQCPVCKADI 80 (240)
Q Consensus 50 C~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v 80 (240)
|..|....-. +.+.||+|+...
T Consensus 252 ClsChqqIHR---------NAPiCPlCKaKs 273 (286)
T KOG4451|consen 252 CLSCHQQIHR---------NAPICPLCKAKS 273 (286)
T ss_pred HHHHHHHHhc---------CCCCCcchhhcc
Confidence 7888766554 459999998764
No 171
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=27.54 E-value=41 Score=22.20 Aligned_cols=32 Identities=19% Similarity=0.375 Sum_probs=21.7
Q ss_pred cccccccccCCCc----EEcCCCCcccHHHHHHHHH
Q 026323 28 FDCNICLDFAYDP----VVTLCGHLYCWPCIYKWLH 59 (240)
Q Consensus 28 ~~C~ICle~~~~p----v~t~CGH~FC~~CI~~wl~ 59 (240)
..|.+|...+.-- .-..||+.||..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 4588887665431 2248999999999865443
No 172
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=27.40 E-value=59 Score=29.45 Aligned_cols=59 Identities=20% Similarity=0.249 Sum_probs=48.7
Q ss_pred CCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceeccCC
Q 026323 25 NGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGR 91 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~~~ 91 (240)
.+...|.|-++++.+||+++-|=+|-..=|.+.++.-. .-=|+-+..+.+..++||+..
T Consensus 209 pd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvg--------hfdpvtr~~Lte~q~ipN~al 267 (284)
T KOG4642|consen 209 PDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVG--------HFDPVTRWPLTEYQLIPNLAL 267 (284)
T ss_pred cchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhc--------cCCchhcccCCHHhhccchHH
Confidence 35577799999999999999999999999988887432 445888889998888888754
No 173
>PLN02195 cellulose synthase A
Probab=27.25 E-value=68 Score=34.20 Aligned_cols=48 Identities=19% Similarity=0.415 Sum_probs=34.3
Q ss_pred CccccccccccCC-----CcEE--cCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 26 GCFDCNICLDFAY-----DPVV--TLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 26 ~~~~C~ICle~~~-----~pv~--t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
..-.|.||-|.+. ++-+ -.|+--.|.+|.. +=. .++...||.|+...+
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCye-yer-------~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLE-YEI-------KEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhh-hhh-------hcCCccCCccCCccc
Confidence 3457999999763 3333 3788889999983 222 236699999998876
No 174
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=27.18 E-value=34 Score=25.98 Aligned_cols=37 Identities=35% Similarity=0.825 Sum_probs=28.4
Q ss_pred ccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 27 CFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 27 ~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
.-.|-||...++.+ ||.||..|-++ + ..|..|-+.+.
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAYk--k-----------GiCamCGKki~ 80 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAYK--K-----------GICAMCGKKIL 80 (90)
T ss_pred CccccccccccccC-----CCccChhhhcc--c-----------CcccccCCeec
Confidence 34799999877664 78999999653 2 78999987763
No 175
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=26.63 E-value=43 Score=32.42 Aligned_cols=45 Identities=33% Similarity=0.784 Sum_probs=32.8
Q ss_pred CccccccccccCCC-cEEc-CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 26 GCFDCNICLDFAYD-PVVT-LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 26 ~~~~C~ICle~~~~-pv~t-~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
..|+|-+|..-+.. |.++ .=..++|.+|.++-+. .+|-+|...|.
T Consensus 359 ~CF~Cv~C~r~ldgipFtvd~~n~v~Cv~dfh~kfA-----------PrCs~C~~PI~ 405 (468)
T KOG1701|consen 359 GCFTCVVCARCLDGIPFTVDSQNNVYCVPDFHKKFA-----------PRCSVCGNPIL 405 (468)
T ss_pred CceEEEEeccccCCccccccCCCceeeehhhhhhcC-----------cchhhccCCcc
Confidence 57888888877754 3333 4557888888877666 88999987764
No 176
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=25.92 E-value=56 Score=22.63 Aligned_cols=30 Identities=20% Similarity=0.385 Sum_probs=14.8
Q ss_pred hhhhHhHHH-HHhhhHHHHHHHHHHHHHHhh
Q 026323 210 RLRRHEMQA-VKSLNRISIFLFCCFLLCLIV 239 (240)
Q Consensus 210 r~~~~~~q~-~~~l~~~~~f~~~~~~l~l~~ 239 (240)
+.||++|+. ..-+..|.+=.+..|++++.+
T Consensus 17 ~ERk~~~~e~~~kv~tVVlP~l~~~~~~Ivv 47 (56)
T PF15012_consen 17 KERKKEMQEAQQKVFTVVLPTLAAVFLFIVV 47 (56)
T ss_pred HHHHHHHHHHHHhheeEehhHHHHHHHHHhh
Confidence 468888664 334444444344444444433
No 177
>PHA02849 putative transmembrane protein; Provisional
Probab=25.79 E-value=52 Score=24.35 Aligned_cols=16 Identities=19% Similarity=0.474 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhh
Q 026323 224 RISIFLFCCFLLCLIV 239 (240)
Q Consensus 224 ~~~~f~~~~~~l~l~~ 239 (240)
-|++|+++.+|++.||
T Consensus 19 vi~v~v~vI~i~~flL 34 (82)
T PHA02849 19 VILVFVLVISFLAFML 34 (82)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3777888877777765
No 178
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.53 E-value=45 Score=26.34 Aligned_cols=41 Identities=22% Similarity=0.421 Sum_probs=28.4
Q ss_pred cccccccccCCCcE--------------EcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCcc
Q 026323 28 FDCNICLDFAYDPV--------------VTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCK 77 (240)
Q Consensus 28 ~~C~ICle~~~~pv--------------~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr 77 (240)
..|--|+..+.++. -..|.+.||.+|=.-+-+ .-..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe---------~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHE---------SLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhh---------hccCCcCCC
Confidence 45888988776531 247999999999654433 226799885
No 179
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=25.09 E-value=53 Score=35.22 Aligned_cols=48 Identities=29% Similarity=0.710 Sum_probs=34.1
Q ss_pred CccccccccccCC-----CcEE--cCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 26 GCFDCNICLDFAY-----DPVV--TLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 26 ~~~~C~ICle~~~-----~pv~--t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
..-.|.||-|.+. ++-+ -.|+--.|.+|.. +=. ..+...||.|+...+
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cye-ye~-------~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYE-YER-------SEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhh-hhh-------hcCCccCCccCCchh
Confidence 4567999999873 2333 2788889999983 222 235689999998765
No 180
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=24.78 E-value=32 Score=35.37 Aligned_cols=54 Identities=24% Similarity=0.523 Sum_probs=36.2
Q ss_pred CCccccccccccCCCc----------EEcCCCCcc--------------------cHHHHHHHHHhhccccCCCCCCCCC
Q 026323 25 NGCFDCNICLDFAYDP----------VVTLCGHLY--------------------CWPCIYKWLHVQSASLASDEHPQCP 74 (240)
Q Consensus 25 ~~~~~C~ICle~~~~p----------v~t~CGH~F--------------------C~~CI~~wl~~~s~~~~~~~~~~CP 74 (240)
.+--.|.-|++.+.|| ..|.||..| |..|..++-..-. -.-..+...||
T Consensus 99 pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~n-RRfHAQp~aCp 177 (750)
T COG0068 99 PDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLN-RRFHAQPIACP 177 (750)
T ss_pred CchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccc-cccccccccCc
Confidence 3557899999998776 336788877 9999987755210 00112447899
Q ss_pred CccCC
Q 026323 75 VCKAD 79 (240)
Q Consensus 75 vCr~~ 79 (240)
.|.-.
T Consensus 178 ~CGP~ 182 (750)
T COG0068 178 KCGPH 182 (750)
T ss_pred ccCCC
Confidence 99653
No 181
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=24.35 E-value=70 Score=24.93 Aligned_cols=45 Identities=24% Similarity=0.386 Sum_probs=27.4
Q ss_pred CccccccccccCC---C--cEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccC
Q 026323 26 GCFDCNICLDFAY---D--PVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKA 78 (240)
Q Consensus 26 ~~~~C~ICle~~~---~--pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~ 78 (240)
++..|.+|...+. + -+-..|.|.+|..|-.. . .......|-+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~--~------~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY--S------KKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE--T------SSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc--C------CCCCCEEChhhHH
Confidence 5678999987642 2 24458999999998543 1 1123467777754
No 182
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=24.16 E-value=35 Score=30.43 Aligned_cols=11 Identities=45% Similarity=1.053 Sum_probs=8.6
Q ss_pred CCCCCccCCCC
Q 026323 71 PQCPVCKADIS 81 (240)
Q Consensus 71 ~~CPvCr~~v~ 81 (240)
..|+.|+..+.
T Consensus 275 ~~C~~C~skF~ 285 (296)
T COG5242 275 PVCKKCKSKFS 285 (296)
T ss_pred CcCcccccccc
Confidence 78888987764
No 183
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.10 E-value=28 Score=32.18 Aligned_cols=48 Identities=27% Similarity=0.568 Sum_probs=38.1
Q ss_pred CCccccccccccCCCcEEc-CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 25 NGCFDCNICLDFAYDPVVT-LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~t-~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
.....|-||...+.-|... -|+|-||.-|...|.... ..||.|+...+
T Consensus 103 ~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~---------~~~~d~~~~~~ 151 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMG---------NDCPDCRGKIS 151 (324)
T ss_pred CCccceeeeeeeEEecccccCceeeeeecCCchhhhhh---------hccchhhcCcC
Confidence 3457788999888877655 599999999999998854 78888876654
No 184
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=23.82 E-value=17 Score=24.34 Aligned_cols=13 Identities=23% Similarity=0.759 Sum_probs=6.9
Q ss_pred CCCCCccCCCCcC
Q 026323 71 PQCPVCKADISHT 83 (240)
Q Consensus 71 ~~CPvCr~~v~~~ 83 (240)
..||+|.+++...
T Consensus 21 ~~CPlC~r~l~~e 33 (54)
T PF04423_consen 21 GCCPLCGRPLDEE 33 (54)
T ss_dssp EE-TTT--EE-HH
T ss_pred CcCCCCCCCCCHH
Confidence 3899999988653
No 185
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=23.62 E-value=64 Score=24.49 Aligned_cols=13 Identities=15% Similarity=0.585 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHH
Q 026323 225 ISIFLFCCFLLCL 237 (240)
Q Consensus 225 ~~~f~~~~~~l~l 237 (240)
++||+.|.+++|+
T Consensus 35 m~~lvI~~iFil~ 47 (94)
T PF05393_consen 35 MWFLVICGIFILL 47 (94)
T ss_pred hhHHHHHHHHHHH
Confidence 3456655555555
No 186
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=23.57 E-value=78 Score=32.85 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=23.1
Q ss_pred ccccccccCCCcEE--cCCCCcccHHHHHHHHHhh
Q 026323 29 DCNICLDFAYDPVV--TLCGHLYCWPCIYKWLHVQ 61 (240)
Q Consensus 29 ~C~ICle~~~~pv~--t~CGH~FC~~CI~~wl~~~ 61 (240)
.|.+|-..++.-.+ --|||.-+..|+++|+...
T Consensus 781 ~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~ 815 (839)
T KOG0269|consen 781 KCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKA 815 (839)
T ss_pred CceeecceeeeeEeecccccccccHHHHHHHHhcC
Confidence 46666655543222 1599999999999999854
No 187
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=23.29 E-value=58 Score=30.52 Aligned_cols=42 Identities=21% Similarity=0.572 Sum_probs=27.7
Q ss_pred ccccccccccCCCc-EE--cCCCCcccHHHHHHHHHhhccccCCCCCCCCCCcc
Q 026323 27 CFDCNICLDFAYDP-VV--TLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCK 77 (240)
Q Consensus 27 ~~~C~ICle~~~~p-v~--t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr 77 (240)
...|-.|.+..... .. -.|.+.||.+|= .+++.. -..||-|.
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCD-v~iHes--------Lh~CpgCe 374 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNVFCLDCD-VFIHES--------LHNCPGCE 374 (378)
T ss_pred CcceeeeccccCCCCcEEchhccceeeccch-HHHHhh--------hhcCCCcC
Confidence 34488886655433 22 389999999995 344432 26899995
No 188
>PLN02400 cellulose synthase
Probab=23.08 E-value=45 Score=35.89 Aligned_cols=47 Identities=32% Similarity=0.611 Sum_probs=33.4
Q ss_pred ccccccccccCC-----CcEE--cCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026323 27 CFDCNICLDFAY-----DPVV--TLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 27 ~~~C~ICle~~~-----~pv~--t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
.-.|.||-|.+- ++-+ -.|+--.|.+|.. + + ...+...||.||...+
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYE-Y-E------RkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYE-Y-E------RKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhh-e-e------cccCCccCcccCCccc
Confidence 358999999973 2332 2788889999973 2 1 2246689999998776
No 189
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=22.51 E-value=53 Score=21.89 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHhh
Q 026323 226 SIFLFCCFLLCLIV 239 (240)
Q Consensus 226 ~~f~~~~~~l~l~~ 239 (240)
|+.+.+.++.||+|
T Consensus 6 wiili~iv~~Cl~l 19 (47)
T PRK10299 6 WVVLVVVVLACLLL 19 (47)
T ss_pred ehHHHHHHHHHHHH
Confidence 44455555555544
No 190
>PHA02975 hypothetical protein; Provisional
Probab=22.45 E-value=63 Score=23.30 Aligned_cols=20 Identities=35% Similarity=0.652 Sum_probs=12.1
Q ss_pred HhhhHHHHHHHHHHHHHHhh
Q 026323 220 KSLNRISIFLFCCFLLCLIV 239 (240)
Q Consensus 220 ~~l~~~~~f~~~~~~l~l~~ 239 (240)
++...+++++++.+++|+++
T Consensus 40 ~~~~~~~~ii~i~~v~~~~~ 59 (69)
T PHA02975 40 KSSLSIILIIFIIFITCIAV 59 (69)
T ss_pred CCchHHHHHHHHHHHHHHHH
Confidence 45555666666666666654
No 191
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=22.30 E-value=8.9 Score=25.77 Aligned_cols=30 Identities=30% Similarity=0.701 Sum_probs=16.3
Q ss_pred ccccc--ccccCCC-----c-EEc--CCCCcccHHHHHHH
Q 026323 28 FDCNI--CLDFAYD-----P-VVT--LCGHLYCWPCIYKW 57 (240)
Q Consensus 28 ~~C~I--Cle~~~~-----p-v~t--~CGH~FC~~CI~~w 57 (240)
..|+- |...+.. . .++ .|++.||+.|-..|
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 36765 7665521 1 122 49999999998776
No 192
>PHA02657 hypothetical protein; Provisional
Probab=21.26 E-value=1e+02 Score=23.34 Aligned_cols=19 Identities=26% Similarity=0.576 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHHHHhh
Q 026323 221 SLNRISIFLFCCFLLCLIV 239 (240)
Q Consensus 221 ~l~~~~~f~~~~~~l~l~~ 239 (240)
|.-.|.+|+++.+|+|.+|
T Consensus 26 ~imVitvfv~vI~il~flL 44 (95)
T PHA02657 26 SILVFTIFIFVVCILIYLL 44 (95)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 5556788888877777654
No 193
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=21.22 E-value=93 Score=20.23 Aligned_cols=32 Identities=31% Similarity=0.602 Sum_probs=25.1
Q ss_pred CCccccccccccCCCc-EEcCCCCcccHHHHHH
Q 026323 25 NGCFDCNICLDFAYDP-VVTLCGHLYCWPCIYK 56 (240)
Q Consensus 25 ~~~~~C~ICle~~~~p-v~t~CGH~FC~~CI~~ 56 (240)
.+.+.|..|...+.+. ....=|..||..|..+
T Consensus 24 ~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~ 56 (58)
T PF00412_consen 24 PECFKCSKCGKPLNDGDFYEKDGKPYCKDCYQK 56 (58)
T ss_dssp TTTSBETTTTCBTTTSSEEEETTEEEEHHHHHH
T ss_pred ccccccCCCCCccCCCeeEeECCEEECHHHHhh
Confidence 3679999999988765 4566778999999764
No 194
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=21.22 E-value=72 Score=29.82 Aligned_cols=45 Identities=7% Similarity=-0.106 Sum_probs=32.9
Q ss_pred CCccccccccccCCCcEEcCCCC-cccHHHHHHHHHhhccccCCCCCCCCCCccCCC
Q 026323 25 NGCFDCNICLDFAYDPVVTLCGH-LYCWPCIYKWLHVQSASLASDEHPQCPVCKADI 80 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~t~CGH-~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v 80 (240)
-...+|-.|-+-...-+..+|+| .||..|.. +. ....||+|....
T Consensus 341 ~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s---------~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 341 MSSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--AS---------ASPTSSTCDHND 386 (394)
T ss_pred hhhcccccccCceeeeEeecCCcccChhhhhh--cc---------cCCccccccccc
Confidence 34577888888777767779997 67999876 22 238999997543
No 195
>PHA02844 putative transmembrane protein; Provisional
Probab=21.06 E-value=72 Score=23.36 Aligned_cols=14 Identities=14% Similarity=0.071 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHh
Q 026323 225 ISIFLFCCFLLCLI 238 (240)
Q Consensus 225 ~~~f~~~~~~l~l~ 238 (240)
+++++++++++|++
T Consensus 49 ~~~ii~i~~v~~~~ 62 (75)
T PHA02844 49 KIWILTIIFVVFAT 62 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344444443
No 196
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.93 E-value=85 Score=28.47 Aligned_cols=37 Identities=24% Similarity=0.448 Sum_probs=29.0
Q ss_pred CCCCccccccccc-----cCCCcEEcCCCCcccHHHHHHHHH
Q 026323 23 NYNGCFDCNICLD-----FAYDPVVTLCGHLYCWPCIYKWLH 59 (240)
Q Consensus 23 ~~~~~~~C~ICle-----~~~~pv~t~CGH~FC~~CI~~wl~ 59 (240)
.......|++|.. ..+..+...||+.||+.|.+-|..
T Consensus 91 ~~~~~~~ls~~~s~e~~~~~e~~~~y~~~~~f~i~~~~i~~~ 132 (271)
T COG5574 91 RFNREETLSIEYSRETNIDKEGEVLYPCGIFFCIGCDYIWSI 132 (271)
T ss_pred ccccccccccccCcccccccccceeeecccccchhhhHHHHH
Confidence 3455678888887 344567789999999999998876
No 197
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=20.63 E-value=41 Score=30.54 Aligned_cols=60 Identities=23% Similarity=0.369 Sum_probs=37.7
Q ss_pred cccccccccCC--CcEEc-----CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCccee
Q 026323 28 FDCNICLDFAY--DPVVT-----LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVP 87 (240)
Q Consensus 28 ~~C~ICle~~~--~pv~t-----~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p 87 (240)
..|.+|.+.+. +...+ .|+-+.+..|+...+......-...-...||.|++.+.-.+++.
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~w~~lv~ 249 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLSWTTLVD 249 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceeeHHHHHH
Confidence 58999998873 23333 57778888999884432211111123478999998776555554
No 198
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=20.46 E-value=40 Score=19.39 Aligned_cols=12 Identities=42% Similarity=1.043 Sum_probs=9.1
Q ss_pred CCCCCccCCCCc
Q 026323 71 PQCPVCKADISH 82 (240)
Q Consensus 71 ~~CPvCr~~v~~ 82 (240)
..||+|.+.+..
T Consensus 2 v~CPiC~~~v~~ 13 (26)
T smart00734 2 VQCPVCFREVPE 13 (26)
T ss_pred CcCCCCcCcccH
Confidence 469999887744
No 200
>PHA02898 virion envelope protein; Provisional
Probab=20.41 E-value=1e+02 Score=23.41 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=18.9
Q ss_pred HHhhhHHHHHHHHHHHHHHhhC
Q 026323 219 VKSLNRISIFLFCCFLLCLIVF 240 (240)
Q Consensus 219 ~~~l~~~~~f~~~~~~l~l~~f 240 (240)
=|.|+-|+|.|+...+|.+++|
T Consensus 44 wRalSii~FIlgivl~lG~~if 65 (92)
T PHA02898 44 LRSISIISFILAIILILGIIFF 65 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999998876
Done!