BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026324
         (240 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
           Cellular Modulator Of Immune Recognition Protein
          Length = 80

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 55  SPSKLVECRICH-EEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQY 111
           +PS    CRICH E D++S +  PC C GSL + H+ C+Q+W        CE+C+ ++
Sbjct: 11  TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 68


>pdb|1VYX|A Chain A, Solution Structure Of The Kshv K3 N-Terminal Domain
          Length = 60

 Score = 35.4 bits (80), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 62  CRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112
           C IC+EE  +      C C G L+  HR C+  W     +T C+IC   YN
Sbjct: 9   CWICNEELGNERFR-ACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58


>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
           Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
           Northeast Structural Genomics Consortium (Nesg) Target
           Hr4710b
          Length = 91

 Score = 30.4 bits (67), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 15/62 (24%)

Query: 62  CRICHEE--DEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPGYTAPP 119
           C IC  E    D   E+PC       Y H+ CV  W  + G  TC +CR  +      PP
Sbjct: 43  CPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQKSG--TCPVCRCMF------PP 89

Query: 120 PL 121
           PL
Sbjct: 90  PL 91


>pdb|2AAA|A Chain A, Calcium Binding In Alpha-Amylases: An X-Ray Diffraction
           Study At 2.1 Angstroms Resolution Of Two Enzymes From
           Aspergillus
          Length = 484

 Score = 28.9 bits (63), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 31/75 (41%)

Query: 10  DRLLTESTIEAAIESGNGSQQATPSAKDDRTAEFSTHRMDKSIGSSPSKLVECRICHEED 69
           D   T+S   A  +  +GSQ  T  +    +    T  +  S  +S +KL+E   C    
Sbjct: 385 DAFYTDSNTIAMAKGTSGSQVITVLSNKGSSGSSYTLTLSGSGYTSGTKLIEAYTCTSVT 444

Query: 70  EDSNMEIPCSCCGSL 84
            DS+ +IP      L
Sbjct: 445 VDSSGDIPVPMASGL 459


>pdb|1IGR|A Chain A, Type 1 Insulin-Like Growth Factor Receptor (Domains 1-3)
          Length = 478

 Score = 27.3 bits (59), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 37/103 (35%), Gaps = 27/103 (26%)

Query: 43  FSTHRMDKSIGSSPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDT 102
           ++T+R  K   S+  K    R C E +E         CC      H +C+        DT
Sbjct: 176 WTTNRCQKMCPSTCGK----RACTENNE---------CC------HPECLGSCSAPDNDT 216

Query: 103 TCEICREQYNPGY---TAPPPLFRYGGNFRANWEISGRDLHHN 142
            C  CR  Y  G      PP  +R+ G     W    RD   N
Sbjct: 217 ACVACRHYYYAGVCVPACPPNTYRFEG-----WRCVDRDFCAN 254


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,982,086
Number of Sequences: 62578
Number of extensions: 287570
Number of successful extensions: 725
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 717
Number of HSP's gapped (non-prelim): 21
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)