Query 026324
Match_columns 240
No_of_seqs 236 out of 801
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 06:32:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026324.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026324hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12428 DUF3675: Protein of u 100.0 2.6E-44 5.7E-49 291.2 8.3 115 113-228 1-118 (118)
2 KOG1609 Protein involved in mR 99.8 3.3E-21 7E-26 172.3 3.0 186 54-240 73-269 (323)
3 PHA02825 LAP/PHD finger-like p 99.8 2.1E-20 4.7E-25 158.2 3.6 77 54-141 3-79 (162)
4 smart00744 RINGv The RING-vari 99.7 1.3E-17 2.7E-22 116.1 3.1 48 61-108 1-49 (49)
5 PHA02862 5L protein; Provision 99.7 1.6E-17 3.4E-22 139.1 3.8 54 59-114 2-55 (156)
6 PF12906 RINGv: RING-variant d 99.7 1.8E-17 3.9E-22 114.4 1.5 46 62-107 1-47 (47)
7 KOG3053 Uncharacterized conser 99.5 2.3E-14 5E-19 129.6 4.0 67 54-120 15-90 (293)
8 COG5183 SSM4 Protein involved 99.5 2.2E-14 4.9E-19 144.8 4.1 56 58-113 11-67 (1175)
9 PF13639 zf-RING_2: Ring finge 97.5 3.1E-05 6.7E-10 51.6 0.7 41 61-108 2-44 (44)
10 KOG4628 Predicted E3 ubiquitin 97.2 0.00037 8.1E-09 66.2 4.5 48 60-113 230-279 (348)
11 PHA02929 N1R/p28-like protein; 97.0 0.00056 1.2E-08 61.9 3.4 50 57-113 172-228 (238)
12 cd00162 RING RING-finger (Real 97.0 0.00063 1.4E-08 43.2 2.6 44 61-110 1-44 (45)
13 COG5540 RING-finger-containing 96.8 0.00085 1.8E-08 63.1 3.3 49 58-113 322-373 (374)
14 PLN03208 E3 ubiquitin-protein 96.7 0.0017 3.6E-08 57.3 3.8 51 57-113 16-80 (193)
15 COG5243 HRD1 HRD ubiquitin lig 96.4 0.0042 9E-08 60.0 4.9 52 56-114 284-347 (491)
16 smart00184 RING Ring finger. E 96.4 0.0035 7.6E-08 38.3 2.7 39 62-107 1-39 (39)
17 PF13920 zf-C3HC4_3: Zinc fing 96.3 0.002 4.4E-08 44.0 1.7 46 59-112 2-48 (50)
18 PF00097 zf-C3HC4: Zinc finger 96.3 0.0022 4.8E-08 41.7 1.7 41 62-107 1-41 (41)
19 PF12678 zf-rbx1: RING-H2 zinc 96.2 0.0029 6.4E-08 47.0 2.0 41 61-108 21-73 (73)
20 PF11793 FANCL_C: FANCL C-term 96.1 0.0022 4.8E-08 47.5 1.0 53 59-114 2-68 (70)
21 PF12861 zf-Apc11: Anaphase-pr 96.1 0.0042 9.2E-08 48.3 2.5 33 78-113 50-83 (85)
22 KOG0802 E3 ubiquitin ligase [P 95.7 0.0074 1.6E-07 59.9 2.9 48 57-111 289-340 (543)
23 KOG0317 Predicted E3 ubiquitin 95.6 0.019 4.1E-07 53.5 4.9 54 53-114 233-286 (293)
24 PHA02926 zinc finger-like prot 95.5 0.012 2.6E-07 53.3 3.4 60 56-122 167-238 (242)
25 KOG0828 Predicted E3 ubiquitin 94.9 0.023 5.1E-07 56.5 3.4 56 52-113 564-635 (636)
26 smart00504 Ubox Modified RING 94.5 0.042 9.1E-07 38.3 3.1 45 61-113 3-47 (63)
27 PF13923 zf-C3HC4_2: Zinc fing 94.3 0.019 4.1E-07 37.3 1.0 38 62-107 1-39 (39)
28 KOG0823 Predicted E3 ubiquitin 93.7 0.089 1.9E-06 47.7 4.3 52 55-112 43-95 (230)
29 COG5219 Uncharacterized conser 92.5 0.037 8.1E-07 58.8 0.1 53 57-112 1467-1523(1525)
30 KOG1493 Anaphase-promoting com 91.8 0.057 1.2E-06 41.6 0.3 49 61-113 22-82 (84)
31 PF14634 zf-RING_5: zinc-RING 91.7 0.13 2.9E-06 34.3 2.0 42 61-109 1-44 (44)
32 PF06210 DUF1003: Protein of u 90.6 1.5 3.3E-05 35.3 7.4 49 176-224 5-56 (108)
33 TIGR00599 rad18 DNA repair pro 90.5 0.18 3.8E-06 49.0 2.5 50 56-113 23-72 (397)
34 KOG0827 Predicted E3 ubiquitin 90.5 0.22 4.7E-06 48.6 3.0 45 59-108 4-52 (465)
35 KOG1785 Tyrosine kinase negati 89.5 0.13 2.9E-06 50.3 0.7 50 57-112 367-416 (563)
36 COG5194 APC11 Component of SCF 89.1 0.24 5.2E-06 38.5 1.7 27 85-113 56-82 (88)
37 PF05290 Baculo_IE-1: Baculovi 87.9 0.4 8.7E-06 40.4 2.4 56 58-114 79-134 (140)
38 PF05883 Baculo_RING: Baculovi 87.8 0.29 6.3E-06 41.1 1.5 41 57-99 24-69 (134)
39 PF14570 zf-RING_4: RING/Ubox 87.0 0.51 1.1E-05 33.1 2.2 45 62-112 1-48 (48)
40 PLN02189 cellulose synthase 81.5 1 2.2E-05 48.6 2.5 51 58-112 33-87 (1040)
41 KOG0804 Cytoplasmic Zn-finger 80.1 0.63 1.4E-05 46.1 0.4 49 55-112 171-222 (493)
42 PLN02436 cellulose synthase A 80.0 1.7 3.6E-05 47.2 3.5 52 57-112 34-89 (1094)
43 KOG4265 Predicted E3 ubiquitin 79.8 1.8 4E-05 41.5 3.4 50 57-113 288-337 (349)
44 KOG2930 SCF ubiquitin ligase, 78.5 1.4 3E-05 35.9 1.8 27 85-113 83-109 (114)
45 PF15227 zf-C3HC4_4: zinc fing 77.5 1.1 2.4E-05 29.9 0.9 40 62-107 1-42 (42)
46 KOG1734 Predicted RING-contain 77.2 0.82 1.8E-05 42.9 0.2 65 56-136 221-294 (328)
47 COG4420 Predicted membrane pro 75.9 14 0.00029 32.9 7.4 49 176-224 59-110 (191)
48 KOG0825 PHD Zn-finger protein 75.0 2.8 6.2E-05 44.4 3.4 30 76-112 142-171 (1134)
49 KOG4445 Uncharacterized conser 74.8 2.1 4.6E-05 40.7 2.2 53 57-114 113-188 (368)
50 COG5432 RAD18 RING-finger-cont 72.6 1.6 3.5E-05 41.4 0.9 48 57-112 23-70 (391)
51 KOG1002 Nucleotide excision re 72.0 2.8 6.1E-05 42.7 2.5 58 55-118 532-592 (791)
52 PF04564 U-box: U-box domain; 70.9 2.4 5.1E-05 31.2 1.3 46 61-113 6-51 (73)
53 TIGR00570 cdk7 CDK-activating 70.4 4.3 9.4E-05 38.4 3.2 49 60-114 4-56 (309)
54 PF13445 zf-RING_UBOX: RING-ty 69.0 3.4 7.3E-05 28.0 1.6 39 62-105 1-43 (43)
55 KOG2177 Predicted E3 ubiquitin 68.9 2.3 5E-05 35.6 1.0 46 56-109 10-55 (386)
56 KOG1645 RING-finger-containing 63.7 5.8 0.00013 39.2 2.7 49 58-110 3-54 (463)
57 PLN02195 cellulose synthase A 63.5 6.9 0.00015 42.3 3.4 52 58-112 5-59 (977)
58 PLN02638 cellulose synthase A 63.3 8.9 0.00019 41.8 4.2 52 58-112 16-70 (1079)
59 KOG0287 Postreplication repair 61.5 3 6.5E-05 40.4 0.4 47 58-112 22-68 (442)
60 PF10367 Vps39_2: Vacuolar sor 60.2 3.2 7E-05 31.3 0.2 33 57-94 76-109 (109)
61 PF08746 zf-RING-like: RING-li 60.1 4.7 0.0001 27.2 1.0 22 86-107 22-43 (43)
62 PLN02400 cellulose synthase 58.2 8.5 0.00018 42.0 3.0 53 57-112 34-89 (1085)
63 PLN02915 cellulose synthase A 56.2 11 0.00024 41.1 3.4 53 57-112 13-68 (1044)
64 KOG1039 Predicted E3 ubiquitin 55.5 9.4 0.0002 36.6 2.6 50 57-111 159-220 (344)
65 PF14569 zf-UDP: Zinc-binding 54.5 15 0.00031 28.5 3.0 54 57-113 7-63 (80)
66 PF10272 Tmpp129: Putative tra 51.9 16 0.00035 35.3 3.5 35 75-112 306-351 (358)
67 KOG0320 Predicted E3 ubiquitin 48.0 19 0.00042 31.9 3.1 51 54-111 126-177 (187)
68 PF07800 DUF1644: Protein of u 47.2 27 0.00058 30.3 3.8 39 59-99 2-49 (162)
69 PF05191 ADK_lid: Adenylate ki 42.6 11 0.00024 24.7 0.6 19 102-120 2-20 (36)
70 smart00249 PHD PHD zinc finger 42.2 8 0.00017 24.3 -0.1 29 62-93 2-30 (47)
71 KOG1941 Acetylcholine receptor 41.0 14 0.0003 36.6 1.2 60 57-121 363-429 (518)
72 PF00301 Rubredoxin: Rubredoxi 38.6 18 0.00039 25.1 1.2 35 102-136 2-39 (47)
73 COG5574 PEX10 RING-finger-cont 37.9 39 0.00085 31.6 3.6 52 55-113 211-263 (271)
74 KOG0802 E3 ubiquitin ligase [P 35.9 23 0.00051 35.4 2.0 48 55-114 475-522 (543)
75 PF09788 Tmemb_55A: Transmembr 35.4 51 0.0011 30.6 3.9 66 163-228 183-249 (256)
76 cd00730 rubredoxin Rubredoxin; 34.7 35 0.00076 23.9 2.2 34 102-135 2-38 (50)
77 KOG2164 Predicted E3 ubiquitin 34.2 36 0.00078 34.4 3.0 50 59-114 186-238 (513)
78 PF11874 DUF3394: Domain of un 31.7 29 0.00063 30.6 1.7 20 218-237 163-182 (183)
79 PF13894 zf-C2H2_4: C2H2-type 31.6 19 0.00041 19.5 0.4 11 103-113 2-12 (24)
80 COG4846 CcdC Membrane protein 30.6 2.7E+02 0.0058 23.9 7.2 47 177-224 96-142 (163)
81 PF11118 DUF2627: Protein of u 30.3 2.5E+02 0.0053 21.7 6.3 48 175-225 3-59 (77)
82 COG1983 PspC Putative stress-r 30.3 59 0.0013 24.5 2.9 15 213-227 45-59 (70)
83 KOG1952 Transcription factor N 29.8 51 0.0011 35.5 3.3 55 55-112 187-247 (950)
84 PF04532 DUF587: Protein of un 27.7 21 0.00046 32.1 0.1 27 65-91 93-122 (215)
85 PF00096 zf-C2H2: Zinc finger, 27.6 23 0.00049 19.7 0.2 11 103-113 2-12 (23)
86 KOG3899 Uncharacterized conser 26.9 42 0.0009 32.2 1.9 27 86-112 328-365 (381)
87 COG5416 Uncharacterized integr 26.8 3.4E+02 0.0073 21.9 6.8 35 199-235 55-90 (98)
88 KOG0801 Predicted E3 ubiquitin 26.8 33 0.00072 30.3 1.2 24 57-80 175-200 (205)
89 PRK10747 putative protoheme IX 26.5 2.8E+02 0.0061 26.1 7.5 8 220-227 55-62 (398)
90 PF05210 Sprouty: Sprouty prot 26.3 49 0.0011 26.9 2.0 19 75-98 59-77 (108)
91 KOG1973 Chromatin remodeling p 26.2 37 0.0008 31.2 1.5 47 63-111 222-269 (274)
92 PF11431 Transport_MerF: Membr 26.2 1.3E+02 0.0028 21.1 3.7 21 217-237 24-46 (46)
93 PF07301 DUF1453: Protein of u 24.7 1.7E+02 0.0037 25.0 5.1 53 176-234 94-146 (148)
94 PF10571 UPF0547: Uncharacteri 24.2 38 0.00082 20.7 0.8 12 101-112 14-25 (26)
95 COG5175 MOT2 Transcriptional r 23.9 74 0.0016 31.2 3.0 50 58-113 13-65 (480)
96 PF06679 DUF1180: Protein of u 21.8 87 0.0019 27.1 2.8 23 208-230 98-120 (163)
97 PRK11877 psaI photosystem I re 21.7 1.3E+02 0.0029 20.2 3.1 34 199-232 3-36 (38)
98 PHA03375 hypothetical protein; 21.7 32 0.0007 36.3 0.2 27 65-91 99-128 (844)
99 PF04423 Rad50_zn_hook: Rad50 21.4 58 0.0013 22.4 1.4 23 91-113 8-32 (54)
100 PF04641 Rtf2: Rtf2 RING-finge 21.4 90 0.0019 28.2 3.0 50 56-113 110-162 (260)
101 COG1773 Rubredoxin [Energy pro 20.4 77 0.0017 22.9 1.8 35 101-135 3-40 (55)
102 PF13153 DUF3985: Protein of u 20.3 3E+02 0.0065 18.9 5.5 35 176-224 3-37 (44)
No 1
>PF12428 DUF3675: Protein of unknown function (DUF3675) ; InterPro: IPR022143 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF00097 from PFAM. There are two completely conserved residues (R and L) that may be functionally important.
Probab=100.00 E-value=2.6e-44 Score=291.16 Aligned_cols=115 Identities=55% Similarity=1.055 Sum_probs=112.2
Q ss_pred cCccCCCCcccccc---ccCCCcccccccCCCCCeeeeeecccccccCCCCccccCCCCCcchhHHHHHHHHHHHHHHhh
Q 026324 113 PGYTAPPPLFRYGG---NFRANWEISGRDLHHNPQLITMVTGEREFLDSDFDEYYTPSSRSLICCRIVAITFMVLLVLRH 189 (240)
Q Consensus 113 ~~yt~p~~~~~~~~---~~~~~w~~~~~dl~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~Crs~ai~~m~lLllrh 189 (240)
|+||+|+|+++.++ ++|++|+++++|+|+ ||+++|+++|++++++||++|+++|++|++||||+|||||+||||||
T Consensus 1 PgYTaPp~~~~~~~~~i~ir~~we~~~~d~~~-~~~~a~~~ae~~~l~~~y~e~~~~~~~~a~~CRsvAli~m~LLllRh 79 (118)
T PF12428_consen 1 PGYTAPPKKFQPGETAIDIRGNWEISRRDLRD-PRFLAMAAAERQFLESEYDEYAASNTRGAACCRSVALIFMVLLLLRH 79 (118)
T ss_pred CCCCCCCCCCCcCccceEecCCccccccCccc-hhhhhhhhhhhhccccccccccccCCCceeHHHHHHHHHHHHHHHHH
Confidence 68999999999998 899999999999998 99999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 026324 190 TLPIIISGAGEYSLTLFTLLILRTIGILLPIYVMVKAFT 228 (240)
Q Consensus 190 ~~~~~~~~~~~~~~~~ft~~llraaGillP~Yi~~rai~ 228 (240)
+++++++|+|+|+|++||+++|||+|||||||||+|+|+
T Consensus 80 al~l~~~~~~~~s~~lftl~~LRaaGilLP~Yim~rais 118 (118)
T PF12428_consen 80 ALALVTGGAEDYSFTLFTLLLLRAAGILLPCYIMARAIS 118 (118)
T ss_pred HHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999984
No 2
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.82 E-value=3.3e-21 Score=172.29 Aligned_cols=186 Identities=30% Similarity=0.439 Sum_probs=147.0
Q ss_pred CCCCCCCeeeEeccCCCCC---CcccccccCCCcccccHHHHHHHHHHhCCccccccccccccCccCCCCcccccc---c
Q 026324 54 SSPSKLVECRICHEEDEDS---NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPGYTAPPPLFRYGG---N 127 (240)
Q Consensus 54 ~~~~~~~~CRIC~e~~~d~---~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~yt~p~~~~~~~~---~ 127 (240)
+.+.....||||+++.++. .++.||.|+|+++|||+.|+++|+..|++..||+|++.|.+.++.+++...+.. .
T Consensus 73 ~~~~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~~~~~~~~~~~~~~ 152 (323)
T KOG1609|consen 73 ESPSSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTKLKPLIVISKVRSG 152 (323)
T ss_pred cCCCCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecceeecceeehhhhhhH
Confidence 4555678999999987543 589999999999999999999999999999999999999998888777654433 1
Q ss_pred cCCCccccc-ccCCCCCeeeeeecccccccCCCCccccCCCCCcchhHHHHH-HHHHHHHHHhhhhhhhccC---CCchh
Q 026324 128 FRANWEISG-RDLHHNPQLITMVTGEREFLDSDFDEYYTPSSRSLICCRIVA-ITFMVLLVLRHTLPIIISG---AGEYS 202 (240)
Q Consensus 128 ~~~~w~~~~-~dl~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~Crs~a-i~~m~lLllrh~~~~~~~~---~~~~~ 202 (240)
..+.|.... ..++. +..+++..+.+.++...++++....+.++..++.++ +.++++.+.++.+.+.... ...+.
T Consensus 153 ~~~~~~~~~~~~~~~-~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 231 (323)
T KOG1609|consen 153 ALSERTLSGMILLKV-ALLVAIIVSVLPLLLGLLFELVLGVPSLVVESPLANPLALVALGLLGFKIWIFIILSGYIFILK 231 (323)
T ss_pred hhhheeeehhhhhhh-hhhheeeEEeehhhhhhhHHHhccccccccCCCccCchhheeecceechHHHHHHHHHHHHHHH
Confidence 122343333 23444 777788888888888888887777778888899888 8899999999999886432 23567
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcC
Q 026324 203 LTLFTLLILRTIGILLPIYVMVKAFTAIQRRRHQQVNY 240 (240)
Q Consensus 203 ~~~ft~~llraaGillP~Yi~~rai~~~q~~r~q~~~~ 240 (240)
.+.+.+.++|+.+++++.+++++++-..|.++.+.+.|
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (323)
T KOG1609|consen 232 SLKVKLVLIRAVIFLLLIKVVLAAVVILQLLLQRLVGY 269 (323)
T ss_pred HHHHHHhHhhhhccchhhhhhhhhHHHHHHHHhcceeE
Confidence 77777899999999999999987777778887776654
No 3
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=99.80 E-value=2.1e-20 Score=158.15 Aligned_cols=77 Identities=27% Similarity=0.576 Sum_probs=62.9
Q ss_pred CCCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCccccccccccccCccCCCCccccccccCCCcc
Q 026324 54 SSPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPGYTAPPPLFRYGGNFRANWE 133 (240)
Q Consensus 54 ~~~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~yt~p~~~~~~~~~~~~~w~ 133 (240)
+.+...+.||||+++++ .+.+||.|+|++||||++||++|++++++..||+|+++|.... ..+|+ ..|.
T Consensus 3 ~~s~~~~~CRIC~~~~~--~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~-~~kpl--------~~W~ 71 (162)
T PHA02825 3 DVSLMDKCCWICKDEYD--VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKK-NYKKC--------TKWR 71 (162)
T ss_pred CcCCCCCeeEecCCCCC--CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEE-ecCCC--------cccc
Confidence 44567889999998864 4679999999999999999999999999999999999998762 33333 3577
Q ss_pred cccccCCC
Q 026324 134 ISGRDLHH 141 (240)
Q Consensus 134 ~~~~dl~~ 141 (240)
.+.+|.++
T Consensus 72 ~~~~dc~~ 79 (162)
T PHA02825 72 CSFRDCHD 79 (162)
T ss_pred ccCcchhh
Confidence 77777665
No 4
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=99.69 E-value=1.3e-17 Score=116.09 Aligned_cols=48 Identities=58% Similarity=1.342 Sum_probs=43.8
Q ss_pred eeeEeccC-CCCCCcccccccCCCcccccHHHHHHHHHHhCCccccccc
Q 026324 61 ECRICHEE-DEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICR 108 (240)
Q Consensus 61 ~CRIC~e~-~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk 108 (240)
+||||+++ +++++++.||.|+|+++|||++||++|+.++++.+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 59999983 3456899999999999999999999999999999999996
No 5
>PHA02862 5L protein; Provisional
Probab=99.68 E-value=1.6e-17 Score=139.11 Aligned_cols=54 Identities=30% Similarity=0.692 Sum_probs=49.0
Q ss_pred CCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCccccccccccccC
Q 026324 59 LVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (240)
Q Consensus 59 ~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (240)
...||||++++++. .+||.|+|++||||++||++|++.+++..||+|+++|..+
T Consensus 2 ~diCWIC~~~~~e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 2 SDICWICNDVCDER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CCEEEEecCcCCCC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 35899999987544 6999999999999999999999999999999999999754
No 6
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=99.66 E-value=1.8e-17 Score=114.38 Aligned_cols=46 Identities=52% Similarity=1.276 Sum_probs=37.6
Q ss_pred eeEeccCCCC-CCcccccccCCCcccccHHHHHHHHHHhCCcccccc
Q 026324 62 CRICHEEDED-SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEIC 107 (240)
Q Consensus 62 CRIC~e~~~d-~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC 107 (240)
||||++++++ ++|++||.|+|+++|||++||++|+.++++.+||+|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 8999998754 469999999999999999999999999999999998
No 7
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=2.3e-14 Score=129.57 Aligned_cols=67 Identities=31% Similarity=0.737 Sum_probs=58.3
Q ss_pred CCCCCCCeeeEeccCCCCCC---cccccccCCCcccccHHHHHHHHHHhC------CccccccccccccCccCCCC
Q 026324 54 SSPSKLVECRICHEEDEDSN---MEIPCSCCGSLKYAHRKCVQRWCNEKG------DTTCEICREQYNPGYTAPPP 120 (240)
Q Consensus 54 ~~~~~~~~CRIC~e~~~d~~---L~~PC~C~GslkyvH~~CL~~W~~~k~------~~~CEiCk~~y~~~yt~p~~ 120 (240)
+..+.++.||||+..++|+. ++.||.|+|+.||||+.||.+|+++|+ ...|.+|+.+|...|+...+
T Consensus 15 ~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P~l~~ 90 (293)
T KOG3053|consen 15 DNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFPQLGP 90 (293)
T ss_pred CccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeeccccCh
Confidence 45667899999999998864 799999999999999999999999984 57999999999988765544
No 8
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.47 E-value=2.2e-14 Score=144.77 Aligned_cols=56 Identities=41% Similarity=0.999 Sum_probs=52.0
Q ss_pred CCCeeeEeccCC-CCCCcccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 58 KLVECRICHEED-EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 58 ~~~~CRIC~e~~-~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
+...||||+.++ +|++|..||+|+||+||+|++||..|...+++++|+|||++|+.
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F 67 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF 67 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeee
Confidence 447999999987 67899999999999999999999999999999999999999864
No 9
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.50 E-value=3.1e-05 Score=51.63 Aligned_cols=41 Identities=39% Similarity=1.066 Sum_probs=31.7
Q ss_pred eeeEeccCCC--CCCcccccccCCCcccccHHHHHHHHHHhCCccccccc
Q 026324 61 ECRICHEEDE--DSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICR 108 (240)
Q Consensus 61 ~CRIC~e~~~--d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk 108 (240)
.|-||+++-+ +.....||. +..|.+|+++|++.++ +|++|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~~~~~~~--~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCG-----HVFHRSCIKEWLKRNN--SCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTS-----EEEEHHHHHHHHHHSS--B-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCC-----CeeCHHHHHHHHHhCC--cCCccC
Confidence 6899998853 334567764 8999999999998864 999995
No 10
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00037 Score=66.17 Aligned_cols=48 Identities=29% Similarity=0.763 Sum_probs=40.0
Q ss_pred CeeeEeccCCCCC-C-cccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 60 VECRICHEEDEDS-N-MEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 60 ~~CRIC~e~~~d~-~-L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
..|-||+|+-.++ . -+.||+ +..|..|+..|+.+. ...|++||+.-..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~-----H~FH~~CIDpWL~~~-r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCS-----HKFHVNCIDPWLTQT-RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCC-----CchhhccchhhHhhc-CccCCCCCCcCCC
Confidence 7999999997543 2 479998 889999999999988 4579999997653
No 11
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.00 E-value=0.00056 Score=61.94 Aligned_cols=50 Identities=34% Similarity=0.701 Sum_probs=37.8
Q ss_pred CCCCeeeEeccCCCCCC-------cccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 57 SKLVECRICHEEDEDSN-------MEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 57 ~~~~~CRIC~e~~~d~~-------L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
+...+|-||++.-.+.+ ...||. +..|..|+.+|+..+ .+|++|+.+|..
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~-----H~FC~~CI~~Wl~~~--~tCPlCR~~~~~ 228 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCN-----HVFCIECIDIWKKEK--NTCPVCRTPFIS 228 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCC-----CcccHHHHHHHHhcC--CCCCCCCCEeeE
Confidence 34679999999743221 345665 789999999999754 489999998863
No 12
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=96.98 E-value=0.00063 Score=43.25 Aligned_cols=44 Identities=36% Similarity=0.949 Sum_probs=33.2
Q ss_pred eeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCccccccccc
Q 026324 61 ECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQ 110 (240)
Q Consensus 61 ~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~ 110 (240)
.|-||++...+.....||. +..|..|+.+|+.. +...|++|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~-----H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCG-----HVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCC-----ChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 4789988764333455576 57999999999987 56689999875
No 13
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.00085 Score=63.07 Aligned_cols=49 Identities=35% Similarity=0.750 Sum_probs=39.7
Q ss_pred CCCeeeEeccCC--CCCCcccccccCCCcccccHHHHHHHHH-HhCCcccccccccccc
Q 026324 58 KLVECRICHEED--EDSNMEIPCSCCGSLKYAHRKCVQRWCN-EKGDTTCEICREQYNP 113 (240)
Q Consensus 58 ~~~~CRIC~e~~--~d~~L~~PC~C~GslkyvH~~CL~~W~~-~k~~~~CEiCk~~y~~ 113 (240)
...+|-||.+.. .|.-++.||. +-.|..|+.+|+. .|. .|++|+.+.+|
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~-----H~FH~~Cv~kW~~~y~~--~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCD-----HRFHVGCVDKWLLGYSN--KCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccC-----ceechhHHHHHHhhhcc--cCCccCCCCCC
Confidence 448999999875 3445799998 7899999999998 454 79999987653
No 14
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=96.69 E-value=0.0017 Score=57.32 Aligned_cols=51 Identities=16% Similarity=0.585 Sum_probs=40.5
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHH--------------hCCcccccccccccc
Q 026324 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--------------KGDTTCEICREQYNP 113 (240)
Q Consensus 57 ~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~--------------k~~~~CEiCk~~y~~ 113 (240)
.+..+|-||++... .+.++||. +.....||.+|+.. ++...|++|+..+..
T Consensus 16 ~~~~~CpICld~~~-dPVvT~CG-----H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 16 GGDFDCNICLDQVR-DPVVTLCG-----HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCccCCccCCCcCC-CcEEcCCC-----chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 45678999998765 47788886 78999999999863 235689999998853
No 15
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.0042 Score=59.96 Aligned_cols=52 Identities=29% Similarity=0.698 Sum_probs=40.0
Q ss_pred CCCCCeeeEeccCC--CC----------CCcccccccCCCcccccHHHHHHHHHHhCCccccccccccccC
Q 026324 56 PSKLVECRICHEED--ED----------SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (240)
Q Consensus 56 ~~~~~~CRIC~e~~--~d----------~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (240)
.+....|-||.++- .+ .|-..||. +..|-.||+.|+..++ +|+||+.+....
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCG-----HilHl~CLknW~ERqQ--TCPICr~p~ifd 347 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCG-----HILHLHCLKNWLERQQ--TCPICRRPVIFD 347 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCccccccc-----ceeeHHHHHHHHHhcc--CCCcccCccccc
Confidence 45667999999882 11 13468998 7899999999998775 899999985433
No 16
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=96.35 E-value=0.0035 Score=38.28 Aligned_cols=39 Identities=38% Similarity=1.026 Sum_probs=30.1
Q ss_pred eeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCcccccc
Q 026324 62 CRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEIC 107 (240)
Q Consensus 62 CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC 107 (240)
|.||++.. ......||. +..|..|+.+|++ ++...|++|
T Consensus 1 C~iC~~~~-~~~~~~~C~-----H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL-KDPVVLPCG-----HTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCC-CCcEEecCC-----ChHHHHHHHHHHH-hCcCCCCCC
Confidence 67888773 346778877 5789999999998 455678876
No 17
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=96.33 E-value=0.002 Score=43.97 Aligned_cols=46 Identities=28% Similarity=0.689 Sum_probs=35.9
Q ss_pred CCeeeEeccCCCCCCcccccccCCCccc-ccHHHHHHHHHHhCCccccccccccc
Q 026324 59 LVECRICHEEDEDSNMEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYN 112 (240)
Q Consensus 59 ~~~CRIC~e~~~d~~L~~PC~C~Gslky-vH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (240)
...|.||++... +....||+ +. +-..|+.+|.+ +...|++|+++++
T Consensus 2 ~~~C~iC~~~~~-~~~~~pCg-----H~~~C~~C~~~~~~--~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPR-DVVLLPCG-----HLCFCEECAERLLK--RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBS-SEEEETTC-----EEEEEHHHHHHHHH--TTSBBTTTTBB-S
T ss_pred cCCCccCCccCC-ceEEeCCC-----ChHHHHHHhHHhcc--cCCCCCcCChhhc
Confidence 357999998754 36789997 56 89999999998 5669999998875
No 18
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.31 E-value=0.0022 Score=41.66 Aligned_cols=41 Identities=34% Similarity=0.944 Sum_probs=34.7
Q ss_pred eeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCcccccc
Q 026324 62 CRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEIC 107 (240)
Q Consensus 62 CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC 107 (240)
|.||++...+.....||. +.+...|+.+|++.++...|++|
T Consensus 1 C~iC~~~~~~~~~~~~C~-----H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCG-----HSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTS-----EEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCC-----CcchHHHHHHHHHhcCCccCCcC
Confidence 778988776544589998 88999999999998888889987
No 19
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=96.19 E-value=0.0029 Score=47.01 Aligned_cols=41 Identities=37% Similarity=0.918 Sum_probs=29.0
Q ss_pred eeeEeccCCCC-----------CC-cccccccCCCcccccHHHHHHHHHHhCCccccccc
Q 026324 61 ECRICHEEDED-----------SN-MEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICR 108 (240)
Q Consensus 61 ~CRIC~e~~~d-----------~~-L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk 108 (240)
.|-||+++..+ -+ ...+|+ +..|..||.+|++.+. +|++|+
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~-----H~FH~~Ci~~Wl~~~~--~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCG-----HIFHFHCISQWLKQNN--TCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTS-----EEEEHHHHHHHHTTSS--B-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccC-----CCEEHHHHHHHHhcCC--cCCCCC
Confidence 49999877521 11 234664 8899999999997665 999996
No 20
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.11 E-value=0.0022 Score=47.49 Aligned_cols=53 Identities=25% Similarity=0.421 Sum_probs=25.5
Q ss_pred CCeeeEeccCCC-C-CCcccc---cccCCCcccccHHHHHHHHHHhC---------CccccccccccccC
Q 026324 59 LVECRICHEEDE-D-SNMEIP---CSCCGSLKYAHRKCVQRWCNEKG---------DTTCEICREQYNPG 114 (240)
Q Consensus 59 ~~~CRIC~e~~~-d-~~L~~P---C~C~GslkyvH~~CL~~W~~~k~---------~~~CEiCk~~y~~~ 114 (240)
+.+|.||++... + .....- ..|. +..|..||.+|+.... ...|+.|+.+.+..
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~---~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCG---KKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT-------B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccC---CHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 468999987642 2 222333 4565 7899999999998631 24799999887643
No 21
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.10 E-value=0.0042 Score=48.28 Aligned_cols=33 Identities=21% Similarity=0.750 Sum_probs=27.5
Q ss_pred cccCCCcccccHHHHHHHHHHh-CCcccccccccccc
Q 026324 78 CSCCGSLKYAHRKCVQRWCNEK-GDTTCEICREQYNP 113 (240)
Q Consensus 78 C~C~GslkyvH~~CL~~W~~~k-~~~~CEiCk~~y~~ 113 (240)
+.|. +-+|..||.+|++.. .+..|++|+++|+.
T Consensus 50 g~C~---H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 50 GKCS---HNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred ccCc---cHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 4554 789999999999974 46799999999875
No 22
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.0074 Score=59.90 Aligned_cols=48 Identities=29% Similarity=0.678 Sum_probs=39.6
Q ss_pred CCCCeeeEeccCCCCC----CcccccccCCCcccccHHHHHHHHHHhCCcccccccccc
Q 026324 57 SKLVECRICHEEDEDS----NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQY 111 (240)
Q Consensus 57 ~~~~~CRIC~e~~~d~----~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y 111 (240)
.....|.||.|+.... +-..||. +-.|..||++|++.+. +|++|+..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~-----Hifh~~CL~~W~er~q--tCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCG-----HIFHDSCLRSWFERQQ--TCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecc-----cchHHHHHHHHHHHhC--cCCcchhhh
Confidence 4567999999986432 6788987 8999999999999854 899999944
No 23
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.019 Score=53.51 Aligned_cols=54 Identities=31% Similarity=0.880 Sum_probs=44.8
Q ss_pred CCCCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCccccccccccccC
Q 026324 53 GSSPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (240)
Q Consensus 53 ~~~~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (240)
.+.+.....|-+|++.-. ++--+||. +..=-.|++.|+++|. .|++|+..++|.
T Consensus 233 ~~i~~a~~kC~LCLe~~~-~pSaTpCG-----HiFCWsCI~~w~~ek~--eCPlCR~~~~ps 286 (293)
T KOG0317|consen 233 SSIPEATRKCSLCLENRS-NPSATPCG-----HIFCWSCILEWCSEKA--ECPLCREKFQPS 286 (293)
T ss_pred ccCCCCCCceEEEecCCC-CCCcCcCc-----chHHHHHHHHHHcccc--CCCcccccCCCc
Confidence 356778899999998764 36679998 6778899999999987 499999999864
No 24
>PHA02926 zinc finger-like protein; Provisional
Probab=95.55 E-value=0.012 Score=53.33 Aligned_cols=60 Identities=25% Similarity=0.546 Sum_probs=43.2
Q ss_pred CCCCCeeeEeccCCC------C--CCcccccccCCCcccccHHHHHHHHHHhC----CccccccccccccCccCCCCcc
Q 026324 56 PSKLVECRICHEEDE------D--SNMEIPCSCCGSLKYAHRKCVQRWCNEKG----DTTCEICREQYNPGYTAPPPLF 122 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~------d--~~L~~PC~C~GslkyvH~~CL~~W~~~k~----~~~CEiCk~~y~~~yt~p~~~~ 122 (240)
.+...+|-||++.-- + -.+..||. +.....|+.+|.+.+. ...|++|+..|.. -.|.+.+
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~Cn-----HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~--I~pSrf~ 238 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCN-----HIFCITCINIWHRTRRETGASDNCPICRTRFRN--ITMSKFY 238 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCC-----chHHHHHHHHHHHhccccCcCCcCCCCcceeee--eccccce
Confidence 456789999998631 1 13566776 7899999999998642 4579999999973 3444443
No 25
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.023 Score=56.55 Aligned_cols=56 Identities=27% Similarity=0.675 Sum_probs=42.5
Q ss_pred CCCCCCCCCeeeEeccCCC------C----------CCcccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 52 IGSSPSKLVECRICHEEDE------D----------SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 52 ~~~~~~~~~~CRIC~e~~~------d----------~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
+|...+....|-||...-+ + +.+.+||. +..|+.||++|.+... ..|+.|+.+..+
T Consensus 564 ~~~~~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~-----HifH~~CL~~WMd~yk-l~CPvCR~pLPp 635 (636)
T KOG0828|consen 564 LEAFVRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCH-----HIFHRQCLLQWMDTYK-LICPVCRCPLPP 635 (636)
T ss_pred ccchhhccccceEeccccceeeccCcchhhhhhhhccccccchH-----HHHHHHHHHHHHhhhc-ccCCccCCCCCC
Confidence 4556678899999976521 1 35778998 7999999999998432 579999987653
No 26
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=94.49 E-value=0.042 Score=38.29 Aligned_cols=45 Identities=18% Similarity=0.351 Sum_probs=36.5
Q ss_pred eeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 61 ECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 61 ~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
.|.||.+.-.+ +...||+ +.+-+.|+.+|+.. ..+|++|++++..
T Consensus 3 ~Cpi~~~~~~~-Pv~~~~G-----~v~~~~~i~~~~~~--~~~cP~~~~~~~~ 47 (63)
T smart00504 3 LCPISLEVMKD-PVILPSG-----QTYERRAIEKWLLS--HGTDPVTGQPLTH 47 (63)
T ss_pred CCcCCCCcCCC-CEECCCC-----CEEeHHHHHHHHHH--CCCCCCCcCCCCh
Confidence 68899887654 7888874 67899999999987 4589999988853
No 27
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=94.31 E-value=0.019 Score=37.30 Aligned_cols=38 Identities=26% Similarity=0.864 Sum_probs=29.2
Q ss_pred eeEeccCCCCCC-cccccccCCCcccccHHHHHHHHHHhCCcccccc
Q 026324 62 CRICHEEDEDSN-MEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEIC 107 (240)
Q Consensus 62 CRIC~e~~~d~~-L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC 107 (240)
|-||++...+ + ...||. +...+.|+++|++.+ .+|++|
T Consensus 1 C~iC~~~~~~-~~~~~~CG-----H~fC~~C~~~~~~~~--~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-PVVVTPCG-----HSFCKECIEKYLEKN--PKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-EEEECTTS-----EEEEHHHHHHHHHCT--SB-TTT
T ss_pred CCCCCCcccC-cCEECCCC-----CchhHHHHHHHHHCc--CCCcCC
Confidence 6789877654 5 578887 789999999999873 689887
No 28
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.67 E-value=0.089 Score=47.69 Aligned_cols=52 Identities=17% Similarity=0.619 Sum_probs=42.8
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHh-CCccccccccccc
Q 026324 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEK-GDTTCEICREQYN 112 (240)
Q Consensus 55 ~~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k-~~~~CEiCk~~y~ 112 (240)
.+...-.|-||++..+| +.+++|. +..==-||-+|+..+ +...|++||....
T Consensus 43 ~~~~~FdCNICLd~akd-PVvTlCG-----HLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLAKD-PVVTLCG-----HLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCCCceeeeeeccccCC-CEEeecc-----cceehHHHHHHHhhcCCCeeCCccccccc
Confidence 46677899999998765 8999998 666778999999876 4667899998764
No 29
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.46 E-value=0.037 Score=58.84 Aligned_cols=53 Identities=26% Similarity=0.725 Sum_probs=38.5
Q ss_pred CCCCeeeEeccCCC--CCCc-ccccc-cCCCcccccHHHHHHHHHHhCCccccccccccc
Q 026324 57 SKLVECRICHEEDE--DSNM-EIPCS-CCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (240)
Q Consensus 57 ~~~~~CRIC~e~~~--d~~L-~~PC~-C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (240)
+...+|-||..--. |..+ ..-|. |+ ...|-.||-+|++++++..|++|+.++.
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCk---nKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCK---NKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhh---hhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 56789999975421 2222 23332 33 4699999999999999999999998775
No 30
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.77 E-value=0.057 Score=41.63 Aligned_cols=49 Identities=24% Similarity=0.656 Sum_probs=35.5
Q ss_pred eeeEeccCC-----------CCCCcccccccCCCcccccHHHHHHHHHHhC-Ccccccccccccc
Q 026324 61 ECRICHEED-----------EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKG-DTTCEICREQYNP 113 (240)
Q Consensus 61 ~CRIC~e~~-----------~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~-~~~CEiCk~~y~~ 113 (240)
.|-||..+. ++-||+-- .|. +-+|..|+.+|++.+. ...|+.|+++|+.
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C~---h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWG-YCL---HAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHH-HHH---HHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 677776552 23355433 443 7899999999999764 5699999999975
No 31
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=91.66 E-value=0.13 Score=34.27 Aligned_cols=42 Identities=29% Similarity=0.665 Sum_probs=34.3
Q ss_pred eeeEeccCC--CCCCcccccccCCCcccccHHHHHHHHHHhCCcccccccc
Q 026324 61 ECRICHEED--EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICRE 109 (240)
Q Consensus 61 ~CRIC~e~~--~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~ 109 (240)
.|-||++.. +..+.+.+|. +.+..+|++++. .....|++|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~Cg-----H~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCG-----HIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccC-----CHHHHHHHHhhc--CCCCCCcCCCC
Confidence 377898876 3356799997 889999999998 66789999975
No 32
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=90.56 E-value=1.5 Score=35.33 Aligned_cols=49 Identities=22% Similarity=0.364 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhhhhhhhc-c--CCCchhHHHHHHHHHHHHhhHHHHHHHH
Q 026324 176 IVAITFMVLLVLRHTLPIII-S--GAGEYSLTLFTLLILRTIGILLPIYVMV 224 (240)
Q Consensus 176 s~ai~~m~lLllrh~~~~~~-~--~~~~~~~~~ft~~llraaGillP~Yi~~ 224 (240)
...+++++++++|-++.+.. . ..|-|+|.++++++-=.|.++-|+..|.
T Consensus 5 ~Fi~~~~~~~~~Wi~~N~~~~~~~~fDpyPFilLnl~lS~~Aa~~ap~Ilms 56 (108)
T PF06210_consen 5 TFIIIFTVFLAVWILLNILAPPRPAFDPYPFILLNLVLSLEAAYQAPLILMS 56 (108)
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888863 2 4589999999998888888888885554
No 33
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.55 E-value=0.18 Score=49.03 Aligned_cols=50 Identities=20% Similarity=0.507 Sum_probs=40.1
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
.+....|.||++... .+.+.||. +.....|+..|+..++ .|++|+..+..
T Consensus 23 Le~~l~C~IC~d~~~-~PvitpCg-----H~FCs~CI~~~l~~~~--~CP~Cr~~~~~ 72 (397)
T TIGR00599 23 LDTSLRCHICKDFFD-VPVLTSCS-----HTFCSLCIRRCLSNQP--KCPLCRAEDQE 72 (397)
T ss_pred cccccCCCcCchhhh-CccCCCCC-----CchhHHHHHHHHhCCC--CCCCCCCcccc
Confidence 346679999988764 46778987 7888999999997653 89999998753
No 34
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.49 E-value=0.22 Score=48.58 Aligned_cols=45 Identities=27% Similarity=0.770 Sum_probs=32.3
Q ss_pred CCeeeEeccCCC-CCCc--ccccccCCCcccccHHHHHHHHHHhCC-ccccccc
Q 026324 59 LVECRICHEEDE-DSNM--EIPCSCCGSLKYAHRKCVQRWCNEKGD-TTCEICR 108 (240)
Q Consensus 59 ~~~CRIC~e~~~-d~~L--~~PC~C~GslkyvH~~CL~~W~~~k~~-~~CEiCk 108 (240)
..+|.||-+.-+ +.++ +.-|. +.+|..||++|+..-.. +.|+||+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cG-----hifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCG-----HIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred cceeeEeccCCccccccccccchh-----hHHHHHHHHHHHccCCccCCCCcee
Confidence 578999943322 2233 34444 68999999999987654 6999998
No 35
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=89.47 E-value=0.13 Score=50.31 Aligned_cols=50 Identities=30% Similarity=0.721 Sum_probs=41.0
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCccccccccccc
Q 026324 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (240)
Q Consensus 57 ~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (240)
+....|.||-+.+.+ .-+-||. +..-..||..|..+.+...|+.|+.+.+
T Consensus 367 sTFeLCKICaendKd-vkIEPCG-----HLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 367 STFELCKICAENDKD-VKIEPCG-----HLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred chHHHHHHhhccCCC-ccccccc-----chHHHHHHHhhcccCCCCCCCceeeEec
Confidence 344689999777654 5578997 6778899999999988889999998876
No 36
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=89.08 E-value=0.24 Score=38.53 Aligned_cols=27 Identities=30% Similarity=0.755 Sum_probs=24.4
Q ss_pred ccccHHHHHHHHHHhCCcccccccccccc
Q 026324 85 KYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 85 kyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
+-.|-.|+.+|++.|| .|++++++|+.
T Consensus 56 HaFH~HCI~rWL~Tk~--~CPld~q~w~~ 82 (88)
T COG5194 56 HAFHDHCIYRWLDTKG--VCPLDRQTWVL 82 (88)
T ss_pred hHHHHHHHHHHHhhCC--CCCCCCceeEE
Confidence 6799999999999977 89999999974
No 37
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=87.90 E-value=0.4 Score=40.43 Aligned_cols=56 Identities=25% Similarity=0.626 Sum_probs=46.2
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCccccccccccccC
Q 026324 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (240)
Q Consensus 58 ~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (240)
..-+|-||+|...|..+..|=.|.|. +.---=|.+-|--.+-.-.|++|++.|+..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY-~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGY-SICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccch-HHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 67899999999888899999999983 344555678888877788999999999853
No 38
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=87.79 E-value=0.29 Score=41.08 Aligned_cols=41 Identities=29% Similarity=0.631 Sum_probs=29.1
Q ss_pred CCCCeeeEeccCCCC--CCcccccccCCCc---ccccHHHHHHHHHHh
Q 026324 57 SKLVECRICHEEDED--SNMEIPCSCCGSL---KYAHRKCVQRWCNEK 99 (240)
Q Consensus 57 ~~~~~CRIC~e~~~d--~~L~~PC~C~Gsl---kyvH~~CL~~W~~~k 99 (240)
+...+|+||++.-.+ +-...+|. |++ |..|..|+++|-+++
T Consensus 24 ~~~~EC~IC~~~I~~~~GvV~vt~~--g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 24 RCTVECQICFDRIDNNDGVVYVTDG--GTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred ccCeeehhhhhhhhcCCCEEEEecC--CeehHHHHHHHHHHHHHHhhc
Confidence 457899999987533 44555554 444 459999999996554
No 39
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=87.01 E-value=0.51 Score=33.10 Aligned_cols=45 Identities=29% Similarity=0.671 Sum_probs=20.5
Q ss_pred eeEeccCCC-CCCcccccccCCCcccccHHHHHHHHHHh--CCccccccccccc
Q 026324 62 CRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCNEK--GDTTCEICREQYN 112 (240)
Q Consensus 62 CRIC~e~~~-d~~L~~PC~C~GslkyvH~~CL~~W~~~k--~~~~CEiCk~~y~ 112 (240)
|.+|.++.+ .+.-..||.|. ++-|+.=|.+-+ ++..|+-|+++|+
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cg------f~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECG------FQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----------HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCC------CcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 456766642 34457999995 456766666554 4789999999985
No 40
>PLN02189 cellulose synthase
Probab=81.52 E-value=1 Score=48.55 Aligned_cols=51 Identities=25% Similarity=0.672 Sum_probs=38.7
Q ss_pred CCCeeeEeccCC---CCCCcccccc-cCCCcccccHHHHHHHHHHhCCccccccccccc
Q 026324 58 KLVECRICHEED---EDSNMEIPCS-CCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (240)
Q Consensus 58 ~~~~CRIC~e~~---~d~~L~~PC~-C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (240)
....|+||-++- .++.+...|+ |. --|=+.|.+ .-.+.|+..|+.||+.|+
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~---fpvCr~Cye-yer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECG---FPVCRPCYE-YERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCC---Cccccchhh-hhhhcCCccCcccCCchh
Confidence 445999998873 4567888998 63 248889984 344457889999999998
No 41
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=80.14 E-value=0.63 Score=46.08 Aligned_cols=49 Identities=24% Similarity=0.691 Sum_probs=34.9
Q ss_pred CCCCCCeeeEeccCCCC---CCcccccccCCCcccccHHHHHHHHHHhCCccccccccccc
Q 026324 55 SPSKLVECRICHEEDED---SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (240)
Q Consensus 55 ~~~~~~~CRIC~e~~~d---~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (240)
..-+.+.|-+|+|.-++ +.+-.+|. +-.|-.|+++|-.. +|++|++--.
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~-----Hsfh~~cl~~w~~~----scpvcR~~q~ 222 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCN-----HSFHCSCLMKWWDS----SCPVCRYCQS 222 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecc-----cccchHHHhhcccC----cChhhhhhcC
Confidence 34677999999987433 34556665 77999999999654 5666665443
No 42
>PLN02436 cellulose synthase A
Probab=80.01 E-value=1.7 Score=47.15 Aligned_cols=52 Identities=25% Similarity=0.675 Sum_probs=39.3
Q ss_pred CCCCeeeEeccC---CCCCCcccccc-cCCCcccccHHHHHHHHHHhCCccccccccccc
Q 026324 57 SKLVECRICHEE---DEDSNMEIPCS-CCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (240)
Q Consensus 57 ~~~~~CRIC~e~---~~d~~L~~PC~-C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (240)
.....|+||-++ ..++.+...|+ |. --|=+.|.+ .-.+.|+..|+.||+.|+
T Consensus 34 ~~~~iCqICGD~Vg~t~dGe~FVACn~C~---fpvCr~Cye-yer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 34 LSGQTCQICGDEIELTVDGEPFVACNECA---FPVCRPCYE-YERREGNQACPQCKTRYK 89 (1094)
T ss_pred cCCccccccccccCcCCCCCEEEeeccCC---Cccccchhh-hhhhcCCccCcccCCchh
Confidence 345699999887 35678888888 53 248889984 344457889999999998
No 43
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.79 E-value=1.8 Score=41.50 Aligned_cols=50 Identities=26% Similarity=0.589 Sum_probs=32.3
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 57 ~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
+..++|=||+.+..+ -++.||.= --.=..|.+.-.-. ...|+||++.+..
T Consensus 288 ~~gkeCVIClse~rd-t~vLPCRH----LCLCs~Ca~~Lr~q--~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRD-TVVLPCRH----LCLCSGCAKSLRYQ--TNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcc-eEEecchh----hehhHhHHHHHHHh--hcCCCccccchHh
Confidence 668999999988754 56777650 01123455554422 3479999998863
No 44
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=78.50 E-value=1.4 Score=35.88 Aligned_cols=27 Identities=19% Similarity=0.586 Sum_probs=23.8
Q ss_pred ccccHHHHHHHHHHhCCcccccccccccc
Q 026324 85 KYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 85 kyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
+-.|.-|+.+|++.++ .|++|.++...
T Consensus 83 HaFH~hCisrWlktr~--vCPLdn~eW~~ 109 (114)
T KOG2930|consen 83 HAFHFHCISRWLKTRN--VCPLDNKEWVF 109 (114)
T ss_pred hHHHHHHHHHHHhhcC--cCCCcCcceeE
Confidence 6799999999998876 89999998764
No 45
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=77.53 E-value=1.1 Score=29.90 Aligned_cols=40 Identities=28% Similarity=0.715 Sum_probs=26.9
Q ss_pred eeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCC--cccccc
Q 026324 62 CRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGD--TTCEIC 107 (240)
Q Consensus 62 CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~--~~CEiC 107 (240)
|-||++-.. ++...+|. +-+=+.||.+|.++.+. ..|++|
T Consensus 1 CpiC~~~~~-~Pv~l~CG-----H~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK-DPVSLPCG-----HSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S-SEEE-SSS-----SEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC-CccccCCc-----CHHHHHHHHHHHHccCCcCCCCcCC
Confidence 667877664 37888887 56788999999987654 588877
No 46
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.18 E-value=0.82 Score=42.86 Aligned_cols=65 Identities=25% Similarity=0.655 Sum_probs=45.1
Q ss_pred CCCCCeeeEeccC-----CCCC----CcccccccCCCcccccHHHHHHHHHHhCCccccccccccccCccCCCCcccccc
Q 026324 56 PSKLVECRICHEE-----DEDS----NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPGYTAPPPLFRYGG 126 (240)
Q Consensus 56 ~~~~~~CRIC~e~-----~~d~----~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~yt~p~~~~~~~~ 126 (240)
-.+...|-+|-.. ++|+ .-..-|+ +-.|+-|+.-|+-..+..+|+-||++-..+ +
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCn-----HvFHEfCIrGWcivGKkqtCPYCKekVdl~-----------r 284 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCN-----HVFHEFCIRGWCIVGKKQTCPYCKEKVDLK-----------R 284 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecc-----cchHHHhhhhheeecCCCCCchHHHHhhHh-----------h
Confidence 3456789999644 2222 1234555 789999999999988888999999876532 2
Q ss_pred ccCCCccccc
Q 026324 127 NFRANWEISG 136 (240)
Q Consensus 127 ~~~~~w~~~~ 136 (240)
-++..|+.++
T Consensus 285 mfsnpWekph 294 (328)
T KOG1734|consen 285 MFSNPWEKPH 294 (328)
T ss_pred hccCccccch
Confidence 3566787643
No 47
>COG4420 Predicted membrane protein [Function unknown]
Probab=75.91 E-value=14 Score=32.94 Aligned_cols=49 Identities=27% Similarity=0.444 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhhhhhhhc---cCCCchhHHHHHHHHHHHHhhHHHHHHHH
Q 026324 176 IVAITFMVLLVLRHTLPIII---SGAGEYSLTLFTLLILRTIGILLPIYVMV 224 (240)
Q Consensus 176 s~ai~~m~lLllrh~~~~~~---~~~~~~~~~~ft~~llraaGillP~Yi~~ 224 (240)
...+.+.++|++|..+.+.+ ..-+.|+|.++.+++.-.|.|--|+..|.
T Consensus 59 ~fil~~~~~ll~Wi~lNl~~~~~~~wDpyPFi~LnLllS~~AaiqAp~IlmS 110 (191)
T COG4420 59 AFILTFTLLLLLWIVLNLFLVPGLAWDPYPFILLNLLLSTLAAIQAPLILMS 110 (191)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCcCCCccHHHHHHHHHHHHHHHHhHHHHH
Confidence 45677888999999998863 33589999999999999999988886554
No 48
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=75.01 E-value=2.8 Score=44.41 Aligned_cols=30 Identities=23% Similarity=0.559 Sum_probs=24.9
Q ss_pred cccccCCCcccccHHHHHHHHHHhCCccccccccccc
Q 026324 76 IPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (240)
Q Consensus 76 ~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (240)
.+|.| |.|..|+..|.+--+ +|++|+.+|-
T Consensus 142 k~c~H-----~FC~~Ci~sWsR~aq--TCPiDR~EF~ 171 (1134)
T KOG0825|consen 142 KHTAH-----YFCEECVGSWSRCAQ--TCPVDRGEFG 171 (1134)
T ss_pred ccccc-----ccHHHHhhhhhhhcc--cCchhhhhhh
Confidence 45654 999999999997654 8999999995
No 49
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=74.77 E-value=2.1 Score=40.74 Aligned_cols=53 Identities=26% Similarity=0.519 Sum_probs=37.6
Q ss_pred CCCCeeeEeccCCCCC--CcccccccCCCcccccHHHHHHHHHHh---------------------CCcccccccccccc
Q 026324 57 SKLVECRICHEEDEDS--NMEIPCSCCGSLKYAHRKCVQRWCNEK---------------------GDTTCEICREQYNP 113 (240)
Q Consensus 57 ~~~~~CRIC~e~~~d~--~L~~PC~C~GslkyvH~~CL~~W~~~k---------------------~~~~CEiCk~~y~~ 113 (240)
-...+|-||+=...++ -.+++|. +|.|-.||.|.+++- -...|++|+...+.
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~C~-----Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTACD-----HYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCCceEEEEEeecCCCceeeehhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 3446677776554333 4578887 899999999998651 14579999987754
Q ss_pred C
Q 026324 114 G 114 (240)
Q Consensus 114 ~ 114 (240)
.
T Consensus 188 e 188 (368)
T KOG4445|consen 188 E 188 (368)
T ss_pred c
Confidence 3
No 50
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=72.59 E-value=1.6 Score=41.41 Aligned_cols=48 Identities=25% Similarity=0.571 Sum_probs=37.4
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCccccccccccc
Q 026324 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (240)
Q Consensus 57 ~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (240)
..+-.||||++--. -++++||+ +-.-.-|+.+.++... .|++|++++.
T Consensus 23 Ds~lrC~IC~~~i~-ip~~TtCg-----HtFCslCIR~hL~~qp--~CP~Cr~~~~ 70 (391)
T COG5432 23 DSMLRCRICDCRIS-IPCETTCG-----HTFCSLCIRRHLGTQP--FCPVCREDPC 70 (391)
T ss_pred hhHHHhhhhhheee-cceecccc-----cchhHHHHHHHhcCCC--CCccccccHH
Confidence 35678999987653 37889987 4566789998887765 8999998875
No 51
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=71.97 E-value=2.8 Score=42.73 Aligned_cols=58 Identities=26% Similarity=0.651 Sum_probs=45.5
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHH---hCCccccccccccccCccCC
Q 026324 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE---KGDTTCEICREQYNPGYTAP 118 (240)
Q Consensus 55 ~~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~---k~~~~CEiCk~~y~~~yt~p 118 (240)
......+|-+|+++.+| ..++-|+ +-.-+.|+..++.. +.+.+|+.|.-.....-+.|
T Consensus 532 enk~~~~C~lc~d~aed-~i~s~Ch-----H~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~ 592 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAED-YIESSCH-----HKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEP 592 (791)
T ss_pred cccCceeecccCChhhh-hHhhhhh-----HHHHHHHHHHHHHhhhcccCCCCccccccccccccch
Confidence 34567899999988765 7888887 56778999999875 45799999999887765555
No 52
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=70.95 E-value=2.4 Score=31.16 Aligned_cols=46 Identities=20% Similarity=0.362 Sum_probs=30.8
Q ss_pred eeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 61 ECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 61 ~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
.|-|+++--. ++.+.|++ +..=+.|+++|+.. +..+|++|+++...
T Consensus 6 ~CpIt~~lM~-dPVi~~~G-----~tyer~~I~~~l~~-~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 6 LCPITGELMR-DPVILPSG-----HTYERSAIERWLEQ-NGGTDPFTRQPLSE 51 (73)
T ss_dssp B-TTTSSB-S-SEEEETTS-----EEEEHHHHHHHHCT-TSSB-TTT-SB-SG
T ss_pred CCcCcCcHhh-CceeCCcC-----CEEcHHHHHHHHHc-CCCCCCCCCCcCCc
Confidence 4666655443 37778755 68899999999988 45689999887764
No 53
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.39 E-value=4.3 Score=38.43 Aligned_cols=49 Identities=18% Similarity=0.403 Sum_probs=35.6
Q ss_pred CeeeEeccCCCCC----CcccccccCCCcccccHHHHHHHHHHhCCccccccccccccC
Q 026324 60 VECRICHEEDEDS----NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (240)
Q Consensus 60 ~~CRIC~e~~~d~----~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (240)
..|-+|....-.+ -+++||. +-+=.+|+.+.+. ++...|+.|+..++..
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~~CG-----H~~C~sCv~~l~~-~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFV-RGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCcCCCCCccCcccccccCCCC-----CcccHHHHHHHhc-CCCCCCCCCCCccchh
Confidence 5799999864222 2677776 5677899999654 3566999999988754
No 54
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=68.99 E-value=3.4 Score=28.00 Aligned_cols=39 Identities=26% Similarity=0.701 Sum_probs=20.8
Q ss_pred eeEeccCCC-C-CCcccccccCCCcccccHHHHHHHHHHh--CCcccc
Q 026324 62 CRICHEEDE-D-SNMEIPCSCCGSLKYAHRKCVQRWCNEK--GDTTCE 105 (240)
Q Consensus 62 CRIC~e~~~-d-~~L~~PC~C~GslkyvH~~CL~~W~~~k--~~~~CE 105 (240)
|-||.+-.+ + .++..||. +-+=++||++|.+.+ +..+|+
T Consensus 1 CpIc~e~~~~~n~P~~L~CG-----H~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKEFSTEENPPMVLPCG-----HVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT----TTSS-EEE-SSS------EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCccccccCCCCCCEEEeCc-----cHHHHHHHHHHHhcCCCCeeeCc
Confidence 567777322 2 35789987 678899999999875 455663
No 55
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.91 E-value=2.3 Score=35.64 Aligned_cols=46 Identities=28% Similarity=0.678 Sum_probs=38.1
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCcccccccc
Q 026324 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICRE 109 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~ 109 (240)
..+...|.||++...+. .+.||. +.+=+.|+..+.. ....|+.|+.
T Consensus 10 ~~~~~~C~iC~~~~~~p-~~l~C~-----H~~c~~C~~~~~~--~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP-VLLPCG-----HNFCRACLTRSWE--GPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcC-cccccc-----chHhHHHHHHhcC--CCcCCcccCC
Confidence 45778999999987653 888887 6778899999988 7789999994
No 56
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.67 E-value=5.8 Score=39.15 Aligned_cols=49 Identities=18% Similarity=0.577 Sum_probs=36.3
Q ss_pred CCCeeeEeccCCC---CCCcccccccCCCcccccHHHHHHHHHHhCCccccccccc
Q 026324 58 KLVECRICHEEDE---DSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQ 110 (240)
Q Consensus 58 ~~~~CRIC~e~~~---d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~ 110 (240)
....|-||+++-. +..++.| .|. +..-..|+++|+-++-...|+.|+.+
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl-~cg---hlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSL-QCG---HLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred ccccCceeeeeeeecCceEEeee-ccc---ccccHHHHHHHHhhhhhhhCcccCCh
Confidence 3468999998842 3456666 232 57889999999986667899999864
No 57
>PLN02195 cellulose synthase A
Probab=63.51 E-value=6.9 Score=42.26 Aligned_cols=52 Identities=21% Similarity=0.487 Sum_probs=35.7
Q ss_pred CCCeeeEeccCC---CCCCcccccccCCCcccccHHHHHHHHHHhCCccccccccccc
Q 026324 58 KLVECRICHEED---EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (240)
Q Consensus 58 ~~~~CRIC~e~~---~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (240)
....|+||-++- .++.+..-|+=.| --|=+.|.+-= ++-|+..|+.||++|+
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~--~pvCrpCyeye-r~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECS--YPLCKACLEYE-IKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCC--Cccccchhhhh-hhcCCccCCccCCccc
Confidence 456899998763 3456666665333 24778887433 3347889999999998
No 58
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=63.28 E-value=8.9 Score=41.82 Aligned_cols=52 Identities=23% Similarity=0.576 Sum_probs=36.4
Q ss_pred CCCeeeEeccCC---CCCCcccccccCCCcccccHHHHHHHHHHhCCccccccccccc
Q 026324 58 KLVECRICHEED---EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (240)
Q Consensus 58 ~~~~CRIC~e~~---~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (240)
....|+||-++- .++.+..-|+=.| --|=+.|.+-=. .-|+..|+.||++|+
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~--FPVCrpCYEYEr-~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCA--FPVCRPCYEYER-KDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCC--Cccccchhhhhh-hcCCccCCccCCchh
Confidence 455999998773 4566666665433 237788874333 347889999999998
No 59
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=61.53 E-value=3 Score=40.39 Aligned_cols=47 Identities=28% Similarity=0.569 Sum_probs=37.3
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCccccccccccc
Q 026324 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (240)
Q Consensus 58 ~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (240)
..-.|-||++=.. -+++.||+ +-.-.-|+...++.+. .|+.|..+|.
T Consensus 22 ~lLRC~IC~eyf~-ip~itpCs-----HtfCSlCIR~~L~~~p--~CP~C~~~~~ 68 (442)
T KOG0287|consen 22 DLLRCGICFEYFN-IPMITPCS-----HTFCSLCIRKFLSYKP--QCPTCCVTVT 68 (442)
T ss_pred HHHHHhHHHHHhc-Cceecccc-----chHHHHHHHHHhccCC--CCCceecccc
Confidence 4568999988764 48999987 4566788888887765 8999998875
No 60
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=60.17 E-value=3.2 Score=31.35 Aligned_cols=33 Identities=24% Similarity=0.700 Sum_probs=24.1
Q ss_pred CCCCeeeEeccCCCCCC-cccccccCCCcccccHHHHHH
Q 026324 57 SKLVECRICHEEDEDSN-MEIPCSCCGSLKYAHRKCVQR 94 (240)
Q Consensus 57 ~~~~~CRIC~e~~~d~~-L~~PC~C~GslkyvH~~CL~~ 94 (240)
.....|.+|...-..+. .+-||+ ..+|..|++|
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~-----~v~H~~C~~r 109 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCG-----HVVHYSCIKR 109 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCC-----eEEecccccC
Confidence 34567999988865444 467875 6899999864
No 61
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=60.14 E-value=4.7 Score=27.19 Aligned_cols=22 Identities=18% Similarity=0.730 Sum_probs=15.8
Q ss_pred cccHHHHHHHHHHhCCcccccc
Q 026324 86 YAHRKCVQRWCNEKGDTTCEIC 107 (240)
Q Consensus 86 yvH~~CL~~W~~~k~~~~CEiC 107 (240)
-.|..|++++++.+.+..|+.|
T Consensus 22 r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 22 RLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp EE-HHHHHHHTTT-SS-B-TTT
T ss_pred hHHHHHHHHHHhcCCCCCCcCC
Confidence 3999999999998887789877
No 62
>PLN02400 cellulose synthase
Probab=58.23 E-value=8.5 Score=42.00 Aligned_cols=53 Identities=23% Similarity=0.578 Sum_probs=35.9
Q ss_pred CCCCeeeEeccCC---CCCCcccccccCCCcccccHHHHHHHHHHhCCccccccccccc
Q 026324 57 SKLVECRICHEED---EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (240)
Q Consensus 57 ~~~~~CRIC~e~~---~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (240)
.....|+||-++- .++.+..-|+=.| --|=+.|.+-= ..-|+..|+.||++|+
T Consensus 34 ~~gqiCqICGD~VG~t~dGe~FVAC~eCa--FPVCRpCYEYE-RkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 34 LNGQICQICGDDVGVTETGDVFVACNECA--FPVCRPCYEYE-RKDGTQCCPQCKTRYR 89 (1085)
T ss_pred cCCceeeecccccCcCCCCCEEEEEccCC--Cccccchhhee-cccCCccCcccCCccc
Confidence 3456999998773 4566666665433 23677776322 2347889999999998
No 63
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=56.23 E-value=11 Score=41.07 Aligned_cols=53 Identities=26% Similarity=0.729 Sum_probs=36.6
Q ss_pred CCCCeeeEeccCC---CCCCcccccccCCCcccccHHHHHHHHHHhCCccccccccccc
Q 026324 57 SKLVECRICHEED---EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (240)
Q Consensus 57 ~~~~~CRIC~e~~---~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (240)
-....|.||-++- .++.+..-|+=.| --|=+.|.+ .=.+.|+..|+.||++|+
T Consensus 13 ~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~--fpvCr~cye-ye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 13 ADAKTCRVCGDEVGVKEDGQPFVACHVCG--FPVCKPCYE-YERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CCcchhhccccccCcCCCCCEEEEeccCC--Cccccchhh-hhhhcCCccCCccCCchh
Confidence 3567899998773 3456666665333 247788883 333447889999999998
No 64
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.53 E-value=9.4 Score=36.62 Aligned_cols=50 Identities=24% Similarity=0.585 Sum_probs=35.7
Q ss_pred CCCCeeeEeccCCCCCC-----c-c-cccccCCCcccccHHHHHHHHHHhC-----Ccccccccccc
Q 026324 57 SKLVECRICHEEDEDSN-----M-E-IPCSCCGSLKYAHRKCVQRWCNEKG-----DTTCEICREQY 111 (240)
Q Consensus 57 ~~~~~CRIC~e~~~d~~-----L-~-~PC~C~GslkyvH~~CL~~W~~~k~-----~~~CEiCk~~y 111 (240)
...+.|-||.+...+.. + + .+|. +..=.+|+.+|...+. ...|++|+..-
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~-----H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCN-----HSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcc-----hhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 55789999998754322 2 3 3365 4566789999997665 68999998754
No 65
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=54.48 E-value=15 Score=28.51 Aligned_cols=54 Identities=24% Similarity=0.581 Sum_probs=23.6
Q ss_pred CCCCeeeEeccCC---CCCCcccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 57 SKLVECRICHEED---EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 57 ~~~~~CRIC~e~~---~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
.....|.||-++- .++.+..-|.=.+ --|=+.|.+-=.++ |+..|+.|+.+|+-
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~--fPvCr~CyEYErke-g~q~CpqCkt~ykr 63 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECA--FPVCRPCYEYERKE-GNQVCPQCKTRYKR 63 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS-------HHHHHHHHHT-S-SB-TTT--B---
T ss_pred cCCcccccccCccccCCCCCEEEEEcccC--CccchhHHHHHhhc-CcccccccCCCccc
Confidence 3567899997763 4566766665433 34778887765544 56799999999974
No 66
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=51.94 E-value=16 Score=35.27 Aligned_cols=35 Identities=23% Similarity=0.714 Sum_probs=26.3
Q ss_pred ccccccCCCcccccHHHHHHHHHHh-----------CCccccccccccc
Q 026324 75 EIPCSCCGSLKYAHRKCVQRWCNEK-----------GDTTCEICREQYN 112 (240)
Q Consensus 75 ~~PC~C~GslkyvH~~CL~~W~~~k-----------~~~~CEiCk~~y~ 112 (240)
-.+|-|+- --=.+|+.||+.++ |+..|+.|+..|=
T Consensus 306 C~~C~CRP---mWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 306 CQQCYCRP---MWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred Cccccccc---hHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 35777762 23578999999875 4679999999884
No 67
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.99 E-value=19 Score=31.87 Aligned_cols=51 Identities=16% Similarity=0.475 Sum_probs=36.3
Q ss_pred CCCCCCCeeeEeccCCCCC-CcccccccCCCcccccHHHHHHHHHHhCCcccccccccc
Q 026324 54 SSPSKLVECRICHEEDEDS-NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQY 111 (240)
Q Consensus 54 ~~~~~~~~CRIC~e~~~d~-~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y 111 (240)
..++...-|-||++..++. +.-+-|+ +.+=.+|++.-++. ..+|++|+...
T Consensus 126 ~~~~~~~~CPiCl~~~sek~~vsTkCG-----HvFC~~Cik~alk~--~~~CP~C~kkI 177 (187)
T KOG0320|consen 126 LRKEGTYKCPICLDSVSEKVPVSTKCG-----HVFCSQCIKDALKN--TNKCPTCRKKI 177 (187)
T ss_pred cccccccCCCceecchhhccccccccc-----hhHHHHHHHHHHHh--CCCCCCccccc
Confidence 4455668999999987543 3345565 56778888887754 55999999744
No 68
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=47.24 E-value=27 Score=30.34 Aligned_cols=39 Identities=26% Similarity=0.556 Sum_probs=25.9
Q ss_pred CCeeeEeccCCCCC---------CcccccccCCCcccccHHHHHHHHHHh
Q 026324 59 LVECRICHEEDEDS---------NMEIPCSCCGSLKYAHRKCVQRWCNEK 99 (240)
Q Consensus 59 ~~~CRIC~e~~~d~---------~L~~PC~C~GslkyvH~~CL~~W~~~k 99 (240)
...|-||.+-.-.. .--.|=-|.. .|-|.+||.+..+..
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~T--s~rhSNCLdqfkka~ 49 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDT--SYRHSNCLDQFKKAY 49 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCC--ccchhHHHHHHHHHh
Confidence 46799998875221 1123334664 488999999998764
No 69
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=42.63 E-value=11 Score=24.67 Aligned_cols=19 Identities=21% Similarity=0.593 Sum_probs=14.0
Q ss_pred ccccccccccccCccCCCC
Q 026324 102 TTCEICREQYNPGYTAPPP 120 (240)
Q Consensus 102 ~~CEiCk~~y~~~yt~p~~ 120 (240)
+.|+.|+..|...|..|+.
T Consensus 2 r~C~~Cg~~Yh~~~~pP~~ 20 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNPPKV 20 (36)
T ss_dssp EEETTTTEEEETTTB--SS
T ss_pred cCcCCCCCccccccCCCCC
Confidence 4799999999988776643
No 70
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=41.03 E-value=14 Score=36.63 Aligned_cols=60 Identities=27% Similarity=0.719 Sum_probs=43.9
Q ss_pred CCCCeeeEeccCC--CCCCc-ccccccCCCcccccHHHHHHHHHHhCCccccccccccc----cCccCCCCc
Q 026324 57 SKLVECRICHEED--EDSNM-EIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN----PGYTAPPPL 121 (240)
Q Consensus 57 ~~~~~CRIC~e~~--~d~~L-~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~----~~yt~p~~~ 121 (240)
+.+-.|-.|-+.- .+++| -.||+ +..|..|++..+..+++..|+-|+.--. |+|-..+|.
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCs-----HIfH~rCl~e~L~~n~~rsCP~CrklrSs~~rpgfvgs~~V 429 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCS-----HIFHLRCLQEILENNGTRSCPNCRKLRSSMKRPGFVGSVPV 429 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchh-----HHHHHHHHHHHHHhCCCCCCccHHHHHhhccCCCCcCCCcc
Confidence 4567898997653 33455 58998 7999999999999999999999994322 555444443
No 72
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=38.59 E-value=18 Score=25.07 Aligned_cols=35 Identities=20% Similarity=0.473 Sum_probs=19.2
Q ss_pred ccccccccccccCccCCCCcccccc---ccCCCccccc
Q 026324 102 TTCEICREQYNPGYTAPPPLFRYGG---NFRANWEISG 136 (240)
Q Consensus 102 ~~CEiCk~~y~~~yt~p~~~~~~~~---~~~~~w~~~~ 136 (240)
..|.+|++.|.+..--|..-...|. ++..+|..+.
T Consensus 2 y~C~~CgyvYd~~~Gd~~~~i~pGt~F~~Lp~~w~CP~ 39 (47)
T PF00301_consen 2 YQCPVCGYVYDPEKGDPENGIPPGTPFEDLPDDWVCPV 39 (47)
T ss_dssp EEETTTSBEEETTTBBGGGTB-TT--GGGS-TT-B-TT
T ss_pred cCCCCCCEEEcCCcCCcccCcCCCCCHHHCCCCCcCcC
Confidence 4799999999877544433233333 4556777654
No 73
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.89 E-value=39 Score=31.58 Aligned_cols=52 Identities=29% Similarity=0.617 Sum_probs=39.5
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHH-HHHHhCCcccccccccccc
Q 026324 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQR-WCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 55 ~~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~-W~~~k~~~~CEiCk~~y~~ 113 (240)
.+.....|-||.+..+ .+.-+||. +..=-.||.. |..+|- ..|++|++.-.|
T Consensus 211 ip~~d~kC~lC~e~~~-~ps~t~Cg-----HlFC~~Cl~~~~t~~k~-~~CplCRak~~p 263 (271)
T COG5574 211 IPLADYKCFLCLEEPE-VPSCTPCG-----HLFCLSCLLISWTKKKY-EFCPLCRAKVYP 263 (271)
T ss_pred ccccccceeeeecccC-Cccccccc-----chhhHHHHHHHHHhhcc-ccCchhhhhccc
Confidence 4456788999988765 37778887 6777889999 887664 469999986654
No 74
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.88 E-value=23 Score=35.37 Aligned_cols=48 Identities=27% Similarity=0.616 Sum_probs=36.2
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCccccccccccccC
Q 026324 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (240)
Q Consensus 55 ~~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (240)
..+....|+||.++- ..-+.||. |..|+.+|...+. .|+.|+......
T Consensus 475 l~~~~~~~~~~~~~~--~~~~~~~~--------~~~~l~~~~~~~~--~~pl~~~~~~~~ 522 (543)
T KOG0802|consen 475 LREPNDVCAICYQEM--SARITPCS--------HALCLRKWLYVQE--VCPLCHTYMKED 522 (543)
T ss_pred hhcccCcchHHHHHH--Hhcccccc--------chhHHHhhhhhcc--ccCCCchhhhcc
Confidence 346678999998776 23356666 9999999998876 799998776543
No 75
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=35.43 E-value=51 Score=30.62 Aligned_cols=66 Identities=20% Similarity=0.152 Sum_probs=40.0
Q ss_pred ccCCCCCcchhHHHHHHHHHHHHHHhhhhhhh-ccCCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 026324 163 YYTPSSRSLICCRIVAITFMVLLVLRHTLPII-ISGAGEYSLTLFTLLILRTIGILLPIYVMVKAFT 228 (240)
Q Consensus 163 ~~~~~~~~~~~Crs~ai~~m~lLllrh~~~~~-~~~~~~~~~~~ft~~llraaGillP~Yi~~rai~ 228 (240)
|...+.-|..|.|.-+|+|.+|-++=-++++. .-|+-.++...--++++=+..||+-++.+.|+++
T Consensus 183 CrKvSSVG~~faRkR~i~f~llgllfliiaigltvGT~~~A~~~~giY~~wv~~~l~a~~~~~rs~y 249 (256)
T PF09788_consen 183 CRKVSSVGPRFARKRAIIFFLLGLLFLIIAIGLTVGTWTYAKTYGGIYVSWVGLFLIALICLIRSIY 249 (256)
T ss_pred CceeccccchHhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCcEeHHHHHHHHHHHHHHHHhhe
Confidence 33334445679998888888876666666664 3444444333322444555556677777888774
No 76
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=34.71 E-value=35 Score=23.89 Aligned_cols=34 Identities=24% Similarity=0.541 Sum_probs=19.9
Q ss_pred ccccccccccccCccCCCCcccccc---ccCCCcccc
Q 026324 102 TTCEICREQYNPGYTAPPPLFRYGG---NFRANWEIS 135 (240)
Q Consensus 102 ~~CEiCk~~y~~~yt~p~~~~~~~~---~~~~~w~~~ 135 (240)
..|.+|++.|.+..-.|..-...|. ++..+|..+
T Consensus 2 y~C~~CgyiYd~~~Gd~~~~i~pGt~f~~Lp~~w~CP 38 (50)
T cd00730 2 YECRICGYIYDPAEGDPDEGIPPGTPFEDLPDDWVCP 38 (50)
T ss_pred cCCCCCCeEECCCCCCcccCcCCCCCHhHCCCCCCCC
Confidence 4799999999876433322222232 345567654
No 77
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.17 E-value=36 Score=34.45 Aligned_cols=50 Identities=26% Similarity=0.574 Sum_probs=35.5
Q ss_pred CCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHH---hCCccccccccccccC
Q 026324 59 LVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE---KGDTTCEICREQYNPG 114 (240)
Q Consensus 59 ~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~---k~~~~CEiCk~~y~~~ 114 (240)
...|-||+++..- +..+-|. +..=-.||-+..+. ++-..|++|...+.++
T Consensus 186 ~~~CPICL~~~~~-p~~t~CG-----HiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k 238 (513)
T KOG2164|consen 186 DMQCPICLEPPSV-PVRTNCG-----HIFCGPCILQYWNYSAIKGPCSCPICRSTITLK 238 (513)
T ss_pred CCcCCcccCCCCc-ccccccC-----ceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence 7899999998754 3333365 55666787776664 3677999998887653
No 78
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=31.75 E-value=29 Score=30.59 Aligned_cols=20 Identities=25% Similarity=0.567 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 026324 218 LPIYVMVKAFTAIQRRRHQQ 237 (240)
Q Consensus 218 lP~Yi~~rai~~~q~~r~q~ 237 (240)
+|-.+++-.|..+||||+++
T Consensus 163 iPAlLLL~lv~~lQrRR~~~ 182 (183)
T PF11874_consen 163 IPALLLLGLVAWLQRRRRRK 182 (183)
T ss_pred HHHHHHHHHHHHHhhhhccC
Confidence 46666666778899999875
No 79
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=31.63 E-value=19 Score=19.50 Aligned_cols=11 Identities=27% Similarity=0.990 Sum_probs=7.3
Q ss_pred ccccccccccc
Q 026324 103 TCEICREQYNP 113 (240)
Q Consensus 103 ~CEiCk~~y~~ 113 (240)
.|++|+..|..
T Consensus 2 ~C~~C~~~~~~ 12 (24)
T PF13894_consen 2 QCPICGKSFRS 12 (24)
T ss_dssp E-SSTS-EESS
T ss_pred CCcCCCCcCCc
Confidence 69999998864
No 80
>COG4846 CcdC Membrane protein involved in cytochrome C biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=30.57 E-value=2.7e+02 Score=23.93 Aligned_cols=47 Identities=21% Similarity=0.457 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCchhHHHHHHHHHHHHhhHHHHHHHH
Q 026324 177 VAITFMVLLVLRHTLPIIISGAGEYSLTLFTLLILRTIGILLPIYVMV 224 (240)
Q Consensus 177 ~ai~~m~lLllrh~~~~~~~~~~~~~~~~ft~~llraaGillP~Yi~~ 224 (240)
...|++-||++|.++-..+++.-++. .+--+|.+-|.|.+.|-=+.+
T Consensus 96 F~~ILigLLiiRi~~K~~is~sid~g-eLsGMF~ilAf~MIvPWRiaM 142 (163)
T COG4846 96 FPVILIGLLIIRIVMKYIISGSIDVG-ELSGMFWILAFGMIVPWRIAM 142 (163)
T ss_pred chhHHHHHHHHHHHHHHHHcCCccHH-HhhhHHHHHHHHhhhHHHHHH
Confidence 46788999999999999988876653 333456677888888865444
No 81
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=30.27 E-value=2.5e+02 Score=21.71 Aligned_cols=48 Identities=15% Similarity=0.236 Sum_probs=32.0
Q ss_pred HHHHHHHHH---------HHHHhhhhhhhccCCCchhHHHHHHHHHHHHhhHHHHHHHHH
Q 026324 175 RIVAITFMV---------LLVLRHTLPIIISGAGEYSLTLFTLLILRTIGILLPIYVMVK 225 (240)
Q Consensus 175 rs~ai~~m~---------lLllrh~~~~~~~~~~~~~~~~ft~~llraaGillP~Yi~~r 225 (240)
|.+|+++++ ..+.|+++=-.+.... + +++.-+++..+-|++.+++++=
T Consensus 3 R~iAlliLvIPg~~a~yGiklMRD~~F~~~~~p~--~-~lwlqfl~G~~lf~~G~~Fi~G 59 (77)
T PF11118_consen 3 RFIALLILVIPGILAAYGIKLMRDTVFGILFSPF--P-SLWLQFLAGLLLFAIGVGFIAG 59 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--h-hHHHHHHHHHHHHHHHHHHHHh
Confidence 667776665 4667777766544332 2 4466677888888888888775
No 82
>COG1983 PspC Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]
Probab=30.25 E-value=59 Score=24.53 Aligned_cols=15 Identities=13% Similarity=0.304 Sum_probs=12.2
Q ss_pred HHhhHHHHHHHHHHH
Q 026324 213 TIGILLPIYVMVKAF 227 (240)
Q Consensus 213 aaGillP~Yi~~rai 227 (240)
..|+.++.||+++.|
T Consensus 45 ~~~~~ii~Yiia~~i 59 (70)
T COG1983 45 LTGFGIIAYIIAALI 59 (70)
T ss_pred chhHHHHHHHHHHHH
Confidence 567788999999865
No 83
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=29.76 E-value=51 Score=35.50 Aligned_cols=55 Identities=22% Similarity=0.549 Sum_probs=39.8
Q ss_pred CCCCCCeeeEeccCCCC-CCcccccccCCCcccccHHHHHHHHHHh-----CCccccccccccc
Q 026324 55 SPSKLVECRICHEEDED-SNMEIPCSCCGSLKYAHRKCVQRWCNEK-----GDTTCEICREQYN 112 (240)
Q Consensus 55 ~~~~~~~CRIC~e~~~d-~~L~~PC~C~GslkyvH~~CL~~W~~~k-----~~~~CEiCk~~y~ 112 (240)
......+|-||.+.-.- .++- +|+.=.+.+|..|+++|-..+ ..|.|+-|+..++
T Consensus 187 l~~~~yeCmIC~e~I~~t~~~W---SC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 187 LSNRKYECMICTERIKRTAPVW---SCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred HhcCceEEEEeeeeccccCCce---ecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 34667899999987532 1221 344445779999999999764 3789999998776
No 84
>PF04532 DUF587: Protein of unknown function (DUF587); InterPro: IPR007618 This domain is found at the N-termini of some human herpesvirus U58 proteins, and some cytomegalovirus UL87 proteins. This region is always found N-terminal to the UL87 (IPR004285 from INTERPRO), which has no known function.
Probab=27.70 E-value=21 Score=32.12 Aligned_cols=27 Identities=37% Similarity=0.603 Sum_probs=19.7
Q ss_pred eccCCCCC--C-cccccccCCCcccccHHH
Q 026324 65 CHEEDEDS--N-MEIPCSCCGSLKYAHRKC 91 (240)
Q Consensus 65 C~e~~~d~--~-L~~PC~C~GslkyvH~~C 91 (240)
|..++.|. . ...|+.|.|.+-|||+++
T Consensus 93 CyCdeWd~~eyl~~~~~~C~GP~LYVhr~r 122 (215)
T PF04532_consen 93 CYCDEWDTNEYLAECAYFCRGPLLYVHRKR 122 (215)
T ss_pred eeecceehhhHHhhCCcccCCceEEEEccc
Confidence 55555432 3 379999999999999943
No 85
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=27.61 E-value=23 Score=19.71 Aligned_cols=11 Identities=27% Similarity=1.011 Sum_probs=9.3
Q ss_pred ccccccccccc
Q 026324 103 TCEICREQYNP 113 (240)
Q Consensus 103 ~CEiCk~~y~~ 113 (240)
.|+.|+..|+.
T Consensus 2 ~C~~C~~~f~~ 12 (23)
T PF00096_consen 2 KCPICGKSFSS 12 (23)
T ss_dssp EETTTTEEESS
T ss_pred CCCCCCCccCC
Confidence 69999999974
No 86
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.89 E-value=42 Score=32.20 Aligned_cols=27 Identities=22% Similarity=0.624 Sum_probs=21.7
Q ss_pred cccHHHHHHHHHHh-----------CCccccccccccc
Q 026324 86 YAHRKCVQRWCNEK-----------GDTTCEICREQYN 112 (240)
Q Consensus 86 yvH~~CL~~W~~~k-----------~~~~CEiCk~~y~ 112 (240)
.--++||.+|+..+ |+-.|+.|+..|-
T Consensus 328 ~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 328 LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 45689999999643 5789999999885
No 87
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=26.85 E-value=3.4e+02 Score=21.85 Aligned_cols=35 Identities=23% Similarity=0.539 Sum_probs=21.4
Q ss_pred CchhHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHH
Q 026324 199 GEYSLTLFTLLILRT-IGILLPIYVMVKAFTAIQRRRH 235 (240)
Q Consensus 199 ~~~~~~~ft~~llra-aGillP~Yi~~rai~~~q~~r~ 235 (240)
+..++++...+++=+ .|.|+-+.++. .+++|.||+
T Consensus 55 g~~~~PLilvil~s~v~G~Li~~~~~~--~Ri~~lrr~ 90 (98)
T COG5416 55 GQWELPLILVILGAAVVGALIAMFAGI--ARILQLRRE 90 (98)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHH
Confidence 336777776666655 66666665543 466776664
No 88
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.82 E-value=33 Score=30.26 Aligned_cols=24 Identities=38% Similarity=0.800 Sum_probs=18.6
Q ss_pred CCCCeeeEeccCCCC--CCccccccc
Q 026324 57 SKLVECRICHEEDED--SNMEIPCSC 80 (240)
Q Consensus 57 ~~~~~CRIC~e~~~d--~~L~~PC~C 80 (240)
....+|-||+|+.+. ..-..||.|
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCLC 200 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCLC 200 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceEE
Confidence 456799999998754 345789999
No 89
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=26.46 E-value=2.8e+02 Score=26.13 Aligned_cols=8 Identities=0% Similarity=0.248 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 026324 220 IYVMVKAF 227 (240)
Q Consensus 220 ~Yi~~rai 227 (240)
+|++.|.+
T Consensus 55 ~~~~~~~~ 62 (398)
T PRK10747 55 LFAIEWLL 62 (398)
T ss_pred HHHHHHHH
Confidence 34444444
No 90
>PF05210 Sprouty: Sprouty protein (Spry); InterPro: IPR007875 Sprouty (Spry) and Spred (Sprouty related EVH1 domain) proteins have been identified as inhibitors of the Ras/mitogen-activated protein kinase (MAPK) cascade, a pathway crucial for developmental processes initiated by activation of various receptor tyrosine kinases [1,2]. These proteins share a conserved, C-terminal cysteine-rich region, the SPR domain. This domain has been defined as a novel cytosol to membrane translocation domain [, , , ]. It has been found to be a PtdIns(4,5)P2-binding domain that targets the proteins to a cellular localization that maximizes their inhibitory potential [, ]. It also mediates homodimer formation of these proteins [, ]. The SPR domain can occur in association with the WH1 domain (see IPR000697 from INTERPRO) (located in the N-terminal part of the proteins) in the Spred proteins.; GO: 0007275 multicellular organismal development, 0009966 regulation of signal transduction, 0016020 membrane
Probab=26.26 E-value=49 Score=26.93 Aligned_cols=19 Identities=37% Similarity=0.982 Sum_probs=15.8
Q ss_pred ccccccCCCcccccHHHHHHHHHH
Q 026324 75 EIPCSCCGSLKYAHRKCVQRWCNE 98 (240)
Q Consensus 75 ~~PC~C~GslkyvH~~CL~~W~~~ 98 (240)
..||+|.. +..|..||.--
T Consensus 59 d~PCSC~~-----~~~c~~RW~~L 77 (108)
T PF05210_consen 59 DHPCSCDT-----PSRCCARWLAL 77 (108)
T ss_pred CCccccCC-----ccchHHHHHHH
Confidence 46999986 88999999854
No 91
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=26.19 E-value=37 Score=31.18 Aligned_cols=47 Identities=26% Similarity=0.464 Sum_probs=31.2
Q ss_pred eEeccCCCCCCcccccccCCCc-ccccHHHHHHHHHHhCCcccccccccc
Q 026324 63 RICHEEDEDSNMEIPCSCCGSL-KYAHRKCVQRWCNEKGDTTCEICREQY 111 (240)
Q Consensus 63 RIC~e~~~d~~L~~PC~C~Gsl-kyvH~~CL~~W~~~k~~~~CEiCk~~y 111 (240)
+||.. ..-+.|+ -|.|.+=- .|+|-.|+--=..-+|.+.|+-|+..-
T Consensus 222 C~Cnq-vsyg~Mi-~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 222 CICNQ-VSYGKMI-GCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAEN 269 (274)
T ss_pred EEecc-ccccccc-ccCCCCCCcceEEEeccccccCCCCcccchhhhhhh
Confidence 35652 2223444 57665544 899999977555557899999998653
No 92
>PF11431 Transport_MerF: Membrane transport protein MerF; InterPro: IPR021091 This entry represents Mercury ion transport protein MerF, which has a core helix-loop-helix domain. It also has two vicinal pairs of cysteine residues which are involved in the transport of Hg(II) across the membrane and are exposed to the cytoplasm []. ; PDB: 1WAZ_A 2LJ2_A 2H3O_A.
Probab=26.17 E-value=1.3e+02 Score=21.10 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=10.2
Q ss_pred HHHHHHHHHH--HHHHHHHHHhh
Q 026324 217 LLPIYVMVKA--FTAIQRRRHQQ 237 (240)
Q Consensus 217 llP~Yi~~ra--i~~~q~~r~q~ 237 (240)
|+|...+.-+ ++++.|+|++|
T Consensus 24 L~PaLa~fi~lt~yal~r~~~~~ 46 (46)
T PF11431_consen 24 LLPALAVFIGLTIYALWRRRRKQ 46 (46)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHhccC
Confidence 5565544443 34555555554
No 93
>PF07301 DUF1453: Protein of unknown function (DUF1453); InterPro: IPR009916 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. Members of this family seem to be found exclusively in the Order Bacillales.
Probab=24.75 E-value=1.7e+02 Score=24.97 Aligned_cols=53 Identities=23% Similarity=0.347 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 026324 176 IVAITFMVLLVLRHTLPIIISGAGEYSLTLFTLLILRTIGILLPIYVMVKAFTAIQRRR 234 (240)
Q Consensus 176 s~ai~~m~lLllrh~~~~~~~~~~~~~~~~ft~~llraaGillP~Yi~~rai~~~q~~r 234 (240)
...+++..||++|-++-..+++.-| .-.+-.+|++=|.|.++| |=++.+.+-|
T Consensus 94 aF~~ili~LlviR~~l~~~l~~~i~-~~~~~~mFf~lAfgmIvp-----WRiamy~kyr 146 (148)
T PF07301_consen 94 AFIFILIGLLVIRIVLKSYLSGSID-PGQLSGMFFLLAFGMIVP-----WRIAMYIKYR 146 (148)
T ss_pred cHHHHHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHHH-----HHHHHHHHHh
Confidence 3567888889999999999887432 223334556666666555 4455555544
No 94
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=24.24 E-value=38 Score=20.66 Aligned_cols=12 Identities=17% Similarity=0.587 Sum_probs=9.9
Q ss_pred Cccccccccccc
Q 026324 101 DTTCEICREQYN 112 (240)
Q Consensus 101 ~~~CEiCk~~y~ 112 (240)
...|+.|++.|.
T Consensus 14 ~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 14 AKFCPHCGYDFE 25 (26)
T ss_pred cCcCCCCCCCCc
Confidence 458999999885
No 95
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=23.86 E-value=74 Score=31.18 Aligned_cols=50 Identities=26% Similarity=0.641 Sum_probs=32.4
Q ss_pred CCCeeeEeccCCC-CCCcccccccCCCcccccHHHHHHHHHHh--CCcccccccccccc
Q 026324 58 KLVECRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCNEK--GDTTCEICREQYNP 113 (240)
Q Consensus 58 ~~~~CRIC~e~~~-d~~L~~PC~C~GslkyvH~~CL~~W~~~k--~~~~CEiCk~~y~~ 113 (240)
+...|-.|.++-+ ...-..||.|- | +-|---|-+-+ -+..|+-|+..|.-
T Consensus 13 eed~cplcie~mditdknf~pc~cg----y--~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCG----Y--QICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred ccccCcccccccccccCCcccCCcc----c--HHHHHHHHHHHhhccCCChHhhhhccc
Confidence 4446999998853 22446799984 3 33434454433 36799999999863
No 96
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=21.79 E-value=87 Score=27.09 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=16.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Q 026324 208 LLILRTIGILLPIYVMVKAFTAI 230 (240)
Q Consensus 208 ~~llraaGillP~Yi~~rai~~~ 230 (240)
++++-.+..++-.|+++|+++.-
T Consensus 98 ~~Vl~g~s~l~i~yfvir~~R~r 120 (163)
T PF06679_consen 98 LYVLVGLSALAILYFVIRTFRLR 120 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 45555666677799999988743
No 97
>PRK11877 psaI photosystem I reaction center subunit VIII; Reviewed
Probab=21.70 E-value=1.3e+02 Score=20.19 Aligned_cols=34 Identities=18% Similarity=0.370 Sum_probs=24.2
Q ss_pred CchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 026324 199 GEYSLTLFTLLILRTIGILLPIYVMVKAFTAIQR 232 (240)
Q Consensus 199 ~~~~~~~ft~~llraaGillP~Yi~~rai~~~q~ 232 (240)
++|+-+.+--++.=..|+++|...|+-...-||+
T Consensus 3 g~~aas~LPsI~VPlVGlvfPai~Mallf~yIe~ 36 (38)
T PRK11877 3 GDFAASWLPWIFVPLVGWVFPAVFMVLLGRYITA 36 (38)
T ss_pred chHhHHhCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4565555556667789999999998876655553
No 98
>PHA03375 hypothetical protein; Provisional
Probab=21.66 E-value=32 Score=36.29 Aligned_cols=27 Identities=33% Similarity=0.751 Sum_probs=19.9
Q ss_pred eccCCCC--CCc-ccccccCCCcccccHHH
Q 026324 65 CHEEDED--SNM-EIPCSCCGSLKYAHRKC 91 (240)
Q Consensus 65 C~e~~~d--~~L-~~PC~C~GslkyvH~~C 91 (240)
|.+++.| +.| ..+|.|.|.+-|||+++
T Consensus 99 CycdeWd~~eyl~~~~~~C~gP~LYvhr~r 128 (844)
T PHA03375 99 CYCDEWDVNEYLAKTACNCRGPLLYIHRSR 128 (844)
T ss_pred ccccchhhhhhhhhcccccCCceEEEEecc
Confidence 5555543 233 79999999999999953
No 99
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=21.41 E-value=58 Score=22.40 Aligned_cols=23 Identities=13% Similarity=0.494 Sum_probs=11.4
Q ss_pred HHHHHHHHh--CCcccccccccccc
Q 026324 91 CVQRWCNEK--GDTTCEICREQYNP 113 (240)
Q Consensus 91 CL~~W~~~k--~~~~CEiCk~~y~~ 113 (240)
-++++++.- ....|++|+.+|..
T Consensus 8 ~~~k~i~~l~~~~~~CPlC~r~l~~ 32 (54)
T PF04423_consen 8 ELKKYIEELKEAKGCCPLCGRPLDE 32 (54)
T ss_dssp HHHHHHHHHTT-SEE-TTT--EE-H
T ss_pred HHHHHHHHHhcCCCcCCCCCCCCCH
Confidence 355666542 23399999999864
No 100
>PF04641 Rtf2: Rtf2 RING-finger
Probab=21.40 E-value=90 Score=28.25 Aligned_cols=50 Identities=18% Similarity=0.474 Sum_probs=33.5
Q ss_pred CCCCCeeeEeccCCCC-CC--cccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 56 PSKLVECRICHEEDED-SN--MEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d-~~--L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
....-.|-|...+-.. .. .+.||.| .+-+.+|++- +....|++|+.+|..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~-----V~s~~alke~---k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGC-----VFSEKALKEL---KKSKKCPVCGKPFTE 162 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCC-----EeeHHHHHhh---cccccccccCCcccc
Confidence 3445566666555432 12 4789998 6777787776 235579999999974
No 101
>COG1773 Rubredoxin [Energy production and conversion]
Probab=20.35 E-value=77 Score=22.90 Aligned_cols=35 Identities=20% Similarity=0.470 Sum_probs=20.9
Q ss_pred CccccccccccccCccCCCCcccccc---ccCCCcccc
Q 026324 101 DTTCEICREQYNPGYTAPPPLFRYGG---NFRANWEIS 135 (240)
Q Consensus 101 ~~~CEiCk~~y~~~yt~p~~~~~~~~---~~~~~w~~~ 135 (240)
...|.+|++.|.+.--.|..-..-|. ++..+|..+
T Consensus 3 ~~~C~~CG~vYd~e~Gdp~~gi~pgT~fedlPd~w~CP 40 (55)
T COG1773 3 RWRCSVCGYVYDPEKGDPRCGIAPGTPFEDLPDDWVCP 40 (55)
T ss_pred ceEecCCceEeccccCCccCCCCCCCchhhCCCccCCC
Confidence 35899999999876433332222233 455677653
No 102
>PF13153 DUF3985: Protein of unknown function (DUF3985)
Probab=20.32 E-value=3e+02 Score=18.88 Aligned_cols=35 Identities=37% Similarity=0.692 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCchhHHHHHHHHHHHHhhHHHHHHHH
Q 026324 176 IVAITFMVLLVLRHTLPIIISGAGEYSLTLFTLLILRTIGILLPIYVMV 224 (240)
Q Consensus 176 s~ai~~m~lLllrh~~~~~~~~~~~~~~~~ft~~llraaGillP~Yi~~ 224 (240)
++|+|+.+||+ |.+.-.+..-+|...|+|-++.++
T Consensus 3 ila~illvlli--------------yv~~kvayvalkilai~lii~~iv 37 (44)
T PF13153_consen 3 ILAIILLVLLI--------------YVFFKVAYVALKILAILLIIFLIV 37 (44)
T ss_pred HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666643 233334455677777766665543
Done!