Query 026324
Match_columns 240
No_of_seqs 236 out of 801
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 10:50:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026324.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026324hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.8 2.7E-19 9.4E-24 127.6 4.2 56 57-113 4-59 (60)
2 2d8s_A Cellular modulator of i 99.7 3.3E-17 1.1E-21 122.8 6.0 64 56-119 12-76 (80)
3 2kiz_A E3 ubiquitin-protein li 98.1 3.9E-06 1.3E-10 58.7 5.0 53 55-114 10-64 (69)
4 2ep4_A Ring finger protein 24; 98.0 8.4E-06 2.9E-10 57.8 5.7 50 57-113 13-64 (74)
5 2ect_A Ring finger protein 126 97.9 6.2E-06 2.1E-10 59.0 3.4 52 56-114 12-65 (78)
6 1x4j_A Ring finger protein 38; 97.9 6.3E-06 2.2E-10 58.8 3.2 51 56-113 20-72 (75)
7 2ecm_A Ring finger and CHY zin 97.9 6.4E-06 2.2E-10 54.9 2.8 48 58-112 4-54 (55)
8 1v87_A Deltex protein 2; ring- 97.9 1.1E-05 3.8E-10 61.6 4.6 51 59-114 25-95 (114)
9 1chc_A Equine herpes virus-1 r 97.8 2.1E-05 7E-10 54.7 4.0 49 58-113 4-52 (68)
10 1iym_A EL5; ring-H2 finger, ub 97.8 7.2E-06 2.5E-10 54.8 1.4 48 58-112 4-54 (55)
11 2ecl_A Ring-box protein 2; RNF 97.8 8.1E-06 2.8E-10 59.8 1.8 27 85-113 50-76 (81)
12 2l0b_A E3 ubiquitin-protein li 97.7 2.1E-05 7.1E-10 58.6 3.5 51 56-113 37-89 (91)
13 2yur_A Retinoblastoma-binding 97.7 2.9E-05 9.8E-10 55.5 3.4 51 56-112 12-63 (74)
14 2ct2_A Tripartite motif protei 97.6 4.7E-05 1.6E-09 55.1 4.6 53 56-113 12-68 (88)
15 2ea6_A Ring finger protein 4; 97.6 1.7E-05 5.9E-10 54.8 1.9 51 56-113 12-68 (69)
16 2d8t_A Dactylidin, ring finger 97.6 1.7E-05 5.9E-10 56.0 1.3 51 56-114 12-62 (71)
17 2ecn_A Ring finger protein 141 97.6 2.3E-05 8E-10 54.8 2.0 49 57-114 13-61 (70)
18 2ysl_A Tripartite motif-contai 97.6 4E-05 1.4E-09 53.8 3.1 52 56-113 17-69 (73)
19 2ecv_A Tripartite motif-contai 97.5 0.00015 5.2E-09 51.6 6.0 52 56-113 16-71 (85)
20 2ecw_A Tripartite motif-contai 97.5 8.9E-05 3E-09 52.9 4.7 51 57-113 17-71 (85)
21 2ecy_A TNF receptor-associated 97.5 5.8E-05 2E-09 52.4 3.2 51 56-113 12-62 (66)
22 2csy_A Zinc finger protein 183 97.5 0.0001 3.4E-09 53.2 4.4 49 56-112 12-60 (81)
23 2djb_A Polycomb group ring fin 97.5 8.9E-05 3.1E-09 52.4 3.6 51 56-114 12-63 (72)
24 2ct0_A Non-SMC element 1 homol 97.4 7.5E-05 2.6E-09 55.0 3.2 54 56-114 12-65 (74)
25 3ng2_A RNF4, snurf, ring finge 97.4 3.8E-05 1.3E-09 53.5 1.4 51 56-113 7-63 (71)
26 3ztg_A E3 ubiquitin-protein li 97.4 0.00012 4.2E-09 53.7 3.9 52 55-112 9-61 (92)
27 3dpl_R Ring-box protein 1; ubi 97.4 6.4E-05 2.2E-09 58.5 2.4 48 59-113 37-101 (106)
28 1t1h_A Gspef-atpub14, armadill 97.4 0.00011 3.7E-09 52.4 3.4 52 55-113 4-55 (78)
29 2xeu_A Ring finger protein 4; 97.4 3E-05 1E-09 52.7 0.3 49 58-113 2-56 (64)
30 2ysj_A Tripartite motif-contai 97.3 0.00025 8.5E-09 48.6 4.4 46 56-107 17-63 (63)
31 2ecj_A Tripartite motif-contai 97.2 0.00023 7.8E-09 47.6 3.5 46 56-107 12-58 (58)
32 2egp_A Tripartite motif-contai 97.1 8.5E-05 2.9E-09 52.8 0.1 52 56-113 9-65 (79)
33 3lrq_A E3 ubiquitin-protein li 97.0 0.00027 9.2E-09 53.4 2.2 50 57-113 20-70 (100)
34 4a0k_B E3 ubiquitin-protein li 97.0 0.00014 4.6E-09 57.9 0.3 48 59-113 48-112 (117)
35 1g25_A CDK-activating kinase a 96.9 0.00054 1.9E-08 47.3 3.2 49 59-113 3-55 (65)
36 1jm7_A BRCA1, breast cancer ty 96.9 0.00074 2.5E-08 50.9 3.6 50 59-114 21-71 (112)
37 3fl2_A E3 ubiquitin-protein li 96.8 0.00076 2.6E-08 52.3 3.4 49 58-113 51-99 (124)
38 4ayc_A E3 ubiquitin-protein li 96.8 0.00033 1.1E-08 55.7 1.2 46 59-112 53-98 (138)
39 1e4u_A Transcriptional repress 96.8 0.0011 3.9E-08 48.5 4.0 53 57-113 9-62 (78)
40 2y43_A E3 ubiquitin-protein li 96.7 0.00048 1.6E-08 51.3 1.8 48 58-113 21-69 (99)
41 4ap4_A E3 ubiquitin ligase RNF 96.7 0.00027 9.1E-09 54.2 0.1 51 57-114 5-61 (133)
42 2ckl_B Ubiquitin ligase protei 96.6 0.0007 2.4E-08 55.0 2.1 49 58-113 53-102 (165)
43 3hct_A TNF receptor-associated 96.4 0.0014 4.9E-08 50.5 2.6 52 56-114 15-66 (118)
44 1z6u_A NP95-like ring finger p 96.4 0.0016 5.5E-08 52.9 3.0 50 58-114 77-126 (150)
45 2ckl_A Polycomb group ring fin 96.4 0.00073 2.5E-08 51.2 0.7 48 58-113 14-62 (108)
46 1rmd_A RAG1; V(D)J recombinati 96.4 0.00085 2.9E-08 51.4 1.0 50 58-114 22-71 (116)
47 3k1l_B Fancl; UBC, ring, RWD, 96.4 0.0017 5.7E-08 61.0 3.1 58 56-116 305-376 (381)
48 2y1n_A E3 ubiquitin-protein li 96.1 0.0027 9.1E-08 59.9 3.1 50 58-114 331-380 (389)
49 4ap4_A E3 ubiquitin ligase RNF 95.7 0.002 6.7E-08 49.2 0.4 51 57-114 70-126 (133)
50 2kr4_A Ubiquitin conjugation f 95.7 0.012 3.9E-07 43.3 4.3 50 56-113 11-60 (85)
51 3l11_A E3 ubiquitin-protein li 95.6 0.0015 5E-08 50.0 -0.7 50 57-113 13-62 (115)
52 2c2l_A CHIP, carboxy terminus 95.3 0.011 3.8E-07 50.3 3.7 50 57-113 206-255 (281)
53 2vje_B MDM4 protein; proto-onc 94.8 0.0088 3E-07 41.6 1.3 50 56-112 4-55 (63)
54 1jm7_B BARD1, BRCA1-associated 94.8 0.0078 2.7E-07 46.2 1.0 46 58-113 21-67 (117)
55 2kre_A Ubiquitin conjugation f 94.7 0.021 7.1E-07 43.5 3.2 50 56-113 26-75 (100)
56 4ic3_A E3 ubiquitin-protein li 94.5 0.0066 2.3E-07 43.3 0.1 44 58-113 23-67 (74)
57 2yu4_A E3 SUMO-protein ligase 94.4 0.031 1E-06 41.6 3.6 50 55-110 3-59 (94)
58 1wgm_A Ubiquitin conjugation f 94.4 0.037 1.3E-06 41.9 4.1 51 56-113 19-69 (98)
59 3knv_A TNF receptor-associated 94.4 0.0063 2.2E-07 49.0 -0.3 51 55-112 27-77 (141)
60 3hcs_A TNF receptor-associated 94.3 0.021 7.1E-07 46.3 2.6 52 56-114 15-66 (170)
61 2vje_A E3 ubiquitin-protein li 94.3 0.016 5.5E-07 40.3 1.6 47 58-112 7-56 (64)
62 1bor_A Transcription factor PM 94.2 0.012 4.3E-07 39.7 0.8 46 57-113 4-49 (56)
63 3nw0_A Non-structural maintena 93.3 0.049 1.7E-06 47.7 3.2 52 57-114 178-230 (238)
64 2ea5_A Cell growth regulator w 93.3 0.095 3.3E-06 37.0 4.2 46 56-113 12-58 (68)
65 2f42_A STIP1 homology and U-bo 93.0 0.051 1.7E-06 45.9 2.9 51 56-113 103-153 (179)
66 1wim_A KIAA0161 protein; ring 92.7 0.054 1.9E-06 39.9 2.4 49 58-111 4-62 (94)
67 2ecg_A Baculoviral IAP repeat- 92.6 0.057 1.9E-06 38.3 2.2 44 58-113 24-68 (75)
68 3t6p_A Baculoviral IAP repeat- 86.8 0.1 3.4E-06 48.1 -0.6 44 58-113 294-338 (345)
69 2lri_C Autoimmune regulator; Z 85.6 0.27 9.4E-06 35.0 1.3 53 53-111 6-60 (66)
70 2bay_A PRE-mRNA splicing facto 83.6 0.53 1.8E-05 32.5 2.0 46 60-113 4-50 (61)
71 2yho_A E3 ubiquitin-protein li 83.3 0.24 8.1E-06 35.8 0.1 44 59-114 18-62 (79)
72 1weu_A Inhibitor of growth fam 82.4 0.76 2.6E-05 34.9 2.6 54 53-112 30-87 (91)
73 3htk_C E3 SUMO-protein ligase 81.6 0.65 2.2E-05 41.7 2.3 52 56-113 178-232 (267)
74 1weo_A Cellulose synthase, cat 75.5 8.1 0.00028 29.5 6.4 54 57-113 14-70 (93)
75 1wen_A Inhibitor of growth fam 69.0 1.1 3.9E-05 32.1 0.3 52 54-111 11-66 (71)
76 2ku3_A Bromodomain-containing 63.7 1.2 4E-05 32.1 -0.5 53 55-110 12-66 (71)
77 2ysm_A Myeloid/lymphoid or mix 62.9 1.3 4.4E-05 33.7 -0.5 51 54-107 2-54 (111)
78 2l43_A N-teminal domain from h 62.9 1.1 3.7E-05 33.4 -0.9 55 55-111 21-76 (88)
79 2k16_A Transcription initiatio 58.2 1.3 4.5E-05 31.4 -1.1 53 57-112 16-70 (75)
80 1f62_A Transcription factor WS 57.9 2 6.8E-05 28.2 -0.2 46 61-109 2-49 (51)
81 2jwa_A Receptor tyrosine-prote 55.4 16 0.00054 24.3 3.9 30 208-238 13-42 (44)
82 2vpb_A Hpygo1, pygopus homolog 44.7 7.7 0.00027 27.2 1.2 35 56-93 5-41 (65)
83 2ri7_A Nucleosome-remodeling f 43.0 3.8 0.00013 33.1 -0.8 52 56-111 5-60 (174)
84 2yql_A PHD finger protein 21A; 42.0 1.7 5.8E-05 29.4 -2.6 48 56-109 6-55 (56)
85 1wep_A PHF8; structural genomi 41.9 23 0.0008 25.1 3.5 53 57-113 10-66 (79)
86 2l5u_A Chromodomain-helicase-D 41.0 6.4 0.00022 27.0 0.3 48 56-109 8-57 (61)
87 2vnf_A ING 4, P29ING4, inhibit 39.8 1.3 4.5E-05 30.6 -3.5 49 55-109 6-58 (60)
88 2ko5_A Ring finger protein Z; 38.0 12 0.00041 28.9 1.4 49 58-115 27-75 (99)
89 1e8j_A Rubredoxin; iron-sulfur 36.3 28 0.00096 23.5 2.9 35 101-135 3-40 (52)
90 2e6r_A Jumonji/ARID domain-con 35.9 2.5 8.4E-05 31.7 -2.8 51 57-110 14-66 (92)
91 2lbm_A Transcriptional regulat 33.7 22 0.00076 28.8 2.4 47 56-108 60-115 (142)
92 2jmi_A Protein YNG1, ING1 homo 33.6 3.7 0.00013 31.0 -2.1 51 55-109 22-75 (90)
93 1wem_A Death associated transc 32.9 17 0.00057 25.6 1.4 52 58-113 15-73 (76)
94 2yt5_A Metal-response element- 32.3 3.9 0.00013 28.1 -2.0 52 56-110 3-61 (66)
95 4rxn_A Rubredoxin; electron tr 31.8 22 0.00076 24.3 1.8 36 101-136 3-41 (54)
96 1dx8_A Rubredoxin; electron tr 31.4 60 0.002 23.1 4.1 36 101-136 7-45 (70)
97 3v43_A Histone acetyltransfera 30.8 21 0.00071 27.1 1.7 34 58-94 4-43 (112)
98 3kv5_D JMJC domain-containing 30.5 6.1 0.00021 37.9 -1.7 54 57-114 35-92 (488)
99 2g6q_A Inhibitor of growth pro 29.8 2.5 8.6E-05 29.5 -3.4 51 55-109 7-59 (62)
100 2kn9_A Rubredoxin; metalloprot 29.5 27 0.00091 25.9 2.1 36 101-136 27-65 (81)
101 3u5n_A E3 ubiquitin-protein li 29.5 5 0.00017 33.6 -2.2 49 58-112 6-56 (207)
102 1wew_A DNA-binding family prot 29.5 49 0.0017 23.4 3.5 53 54-111 11-73 (78)
103 1wev_A Riken cDNA 1110020M19; 27.8 3 0.0001 30.9 -3.5 52 58-112 15-74 (88)
104 1znf_A 31ST zinc finger from X 26.5 23 0.00077 18.0 0.9 12 102-113 2-13 (27)
105 2v3b_B Rubredoxin 2, rubredoxi 26.0 35 0.0012 23.2 2.0 35 102-136 4-41 (55)
106 1x4i_A Inhibitor of growth pro 25.6 11 0.00039 26.6 -0.6 52 56-111 3-56 (70)
107 1ard_A Yeast transcription fac 24.8 25 0.00084 18.0 0.9 12 102-113 3-14 (29)
108 3ql9_A Transcriptional regulat 24.2 32 0.0011 27.4 1.8 48 55-108 53-109 (129)
109 3c6w_A P28ING5, inhibitor of g 24.1 3.6 0.00012 28.3 -3.4 48 56-109 6-57 (59)
110 1s24_A Rubredoxin 2; electron 22.8 39 0.0013 25.3 1.9 36 101-136 35-73 (87)
111 2lvu_A Zinc finger and BTB dom 28.4 18 0.00061 18.5 0.0 12 102-113 3-14 (26)
112 2kvh_A Zinc finger and BTB dom 22.7 24 0.00082 18.1 0.5 12 102-113 4-15 (27)
113 1yk4_A Rubredoxin, RD; electro 22.6 35 0.0012 23.0 1.4 34 102-135 3-39 (52)
114 3o36_A Transcription intermedi 22.5 9.3 0.00032 31.2 -1.8 49 58-112 3-53 (184)
115 2m0f_A Zinc finger and BTB dom 22.2 27 0.00092 17.8 0.7 12 102-113 3-14 (29)
116 2kgg_A Histone demethylase jar 22.2 15 0.00053 24.2 -0.4 44 61-108 4-52 (52)
117 2jny_A Uncharacterized BCR; st 21.8 25 0.00085 25.0 0.6 32 73-114 10-41 (67)
118 2lv9_A Histone-lysine N-methyl 21.3 34 0.0012 25.5 1.3 49 56-108 25-74 (98)
119 1p1p_A AA-conotoxin PIVA; neur 20.9 34 0.0011 20.1 0.9 15 73-87 9-23 (26)
120 2rsd_A E3 SUMO-protein ligase 20.6 22 0.00074 24.7 0.1 48 56-108 7-63 (68)
121 2kvf_A Zinc finger and BTB dom 20.3 28 0.00097 17.8 0.5 12 102-113 4-15 (28)
122 3asl_A E3 ubiquitin-protein li 20.3 7.6 0.00026 27.5 -2.4 46 61-109 20-68 (70)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.76 E-value=2.7e-19 Score=127.59 Aligned_cols=56 Identities=34% Similarity=0.777 Sum_probs=50.7
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 57 ~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
++...||||+++.+ ++++.||.|+|++||||+.||++|++++++.+||+|+++|+.
T Consensus 4 ~~~~~CrIC~~~~~-~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELG-NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECS-CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCC-CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 46679999998754 468999999999999999999999999999999999999975
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3.3e-17 Score=122.76 Aligned_cols=64 Identities=34% Similarity=0.833 Sum_probs=55.2
Q ss_pred CCCCCeeeEeccCCC-CCCcccccccCCCcccccHHHHHHHHHHhCCccccccccccccCccCCC
Q 026324 56 PSKLVECRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPGYTAPP 119 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~-d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~yt~p~ 119 (240)
+.+...|+||+++.+ +++++.||.|+|+++++|+.||++|+..+++.+|++|+++|......+|
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P 76 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSG 76 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCC
Confidence 445678999998763 4678999999999999999999999999998999999999987754443
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.09 E-value=3.9e-06 Score=58.74 Aligned_cols=53 Identities=26% Similarity=0.627 Sum_probs=41.1
Q ss_pred CCCCCCeeeEeccCCCC--CCcccccccCCCcccccHHHHHHHHHHhCCccccccccccccC
Q 026324 55 SPSKLVECRICHEEDED--SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (240)
Q Consensus 55 ~~~~~~~CRIC~e~~~d--~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (240)
.......|.||++...+ .....||. +.+|..|+.+|++.++ .|++|+.++...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCM-----HLFHQVCVDQWLITNK--KCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTS-----CEEEHHHHHHHHHHCS--BCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCC-----CHHHHHHHHHHHHcCC--CCcCcCccccCc
Confidence 34566789999987542 34567875 6799999999998765 699999998753
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=8.4e-06 Score=57.76 Aligned_cols=50 Identities=24% Similarity=0.590 Sum_probs=38.8
Q ss_pred CCCCeeeEeccCCCCCC--cccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 57 SKLVECRICHEEDEDSN--MEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 57 ~~~~~CRIC~e~~~d~~--L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
.....|.||++...+.. ...||. +.+|..|+.+|++.+. .|++|++++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~f~~~Ci~~~~~~~~--~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCK-----HAFHRKCLIKWLEVRK--VCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTT-----EEEEHHHHHHHHHHCS--BCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCC-----CEecHHHHHHHHHcCC--cCCCcCccccc
Confidence 45678999999864432 234764 6899999999998764 89999998864
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.91 E-value=6.2e-06 Score=59.00 Aligned_cols=52 Identities=23% Similarity=0.701 Sum_probs=40.1
Q ss_pred CCCCCeeeEeccCCCCC--CcccccccCCCcccccHHHHHHHHHHhCCccccccccccccC
Q 026324 56 PSKLVECRICHEEDEDS--NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~--~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (240)
......|.||++...+. ....||. +.+|..|+.+|++.+ ..|++|++++...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCN-----HLFHDSCIVPWLEQH--DSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTS-----CEEETTTTHHHHTTT--CSCTTTCCCCCCS
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCC-----CeecHHHHHHHHHcC--CcCcCcCCccCCc
Confidence 34567899999886432 2346875 689999999999655 5899999998754
No 6
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.90 E-value=6.3e-06 Score=58.80 Aligned_cols=51 Identities=33% Similarity=0.748 Sum_probs=40.0
Q ss_pred CCCCCeeeEeccCCCCC--CcccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 56 PSKLVECRICHEEDEDS--NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~--~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
..+...|.||++...+. ....||. +.+|..|+.+|++.+ ..|++|++++.+
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~~--~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCN-----HEFHAKCVDKWLKAN--RTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTT-----EEEETTHHHHHHHHC--SSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCC-----CHhHHHHHHHHHHcC--CcCcCcCCcCCC
Confidence 34667999999886433 2567875 689999999999875 489999998864
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.88 E-value=6.4e-06 Score=54.95 Aligned_cols=48 Identities=25% Similarity=0.587 Sum_probs=38.5
Q ss_pred CCCeeeEeccCCCC---CCcccccccCCCcccccHHHHHHHHHHhCCccccccccccc
Q 026324 58 KLVECRICHEEDED---SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (240)
Q Consensus 58 ~~~~CRIC~e~~~d---~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (240)
....|.||++...+ .....||. +.+|..|+.+|++.+ ..|++|++++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCG-----HLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTS-----CEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCC-----CcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 45689999987532 34678875 689999999999887 68999998764
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.88 E-value=1.1e-05 Score=61.63 Aligned_cols=51 Identities=24% Similarity=0.480 Sum_probs=38.7
Q ss_pred CCeeeEeccCCCCCC--------------c---ccccccCCCcccccHHHHHHHHHH---hCCccccccccccccC
Q 026324 59 LVECRICHEEDEDSN--------------M---EIPCSCCGSLKYAHRKCVQRWCNE---KGDTTCEICREQYNPG 114 (240)
Q Consensus 59 ~~~CRIC~e~~~d~~--------------L---~~PC~C~GslkyvH~~CL~~W~~~---k~~~~CEiCk~~y~~~ 114 (240)
...|-||++...+.. . ..||. +..|..||.+|+.. +....|++|+..|...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 358999998753211 1 56776 78999999999975 4467999999999754
No 9
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.77 E-value=2.1e-05 Score=54.72 Aligned_cols=49 Identities=27% Similarity=0.722 Sum_probs=39.6
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 58 ~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
....|.||++...+.....||. +..|..|+.+|+..+ ..|++|+.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCL-----HAFCYVCITRWIRQN--PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTT-----EEESTTHHHHHHHHS--CSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCC-----CeeHHHHHHHHHhCc--CcCcCCChhhHh
Confidence 4568999999876544778876 679999999999765 489999998863
No 10
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.75 E-value=7.2e-06 Score=54.80 Aligned_cols=48 Identities=35% Similarity=0.750 Sum_probs=36.6
Q ss_pred CCCeeeEeccCCCC--CCcccc-cccCCCcccccHHHHHHHHHHhCCccccccccccc
Q 026324 58 KLVECRICHEEDED--SNMEIP-CSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (240)
Q Consensus 58 ~~~~CRIC~e~~~d--~~L~~P-C~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (240)
+...|-||++...+ .....| |. +..|..|+.+|++.+ ..|++|++++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~-----H~f~~~Ci~~w~~~~--~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCG-----HGFHAECVDMWLGSH--STCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSC-----CEECTTHHHHTTTTC--CSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCC-----CcccHHHHHHHHHcC--CcCcCCCCEeE
Confidence 45689999988643 344555 64 689999999999664 58999998764
No 11
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.75 E-value=8.1e-06 Score=59.81 Aligned_cols=27 Identities=19% Similarity=0.719 Sum_probs=23.9
Q ss_pred ccccHHHHHHHHHHhCCcccccccccccc
Q 026324 85 KYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 85 kyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
+..|..||.+|++.++ +|++|++++..
T Consensus 50 H~FH~~Ci~~Wl~~~~--~CP~CR~~~~~ 76 (81)
T 2ecl_A 50 HSFHNCCMSLWVKQNN--RCPLCQQDWVV 76 (81)
T ss_dssp CEEEHHHHHHHTTTCC--BCTTTCCBCCE
T ss_pred CccChHHHHHHHHhCC--CCCCcCCCcch
Confidence 7899999999998764 89999999864
No 12
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.71 E-value=2.1e-05 Score=58.60 Aligned_cols=51 Identities=33% Similarity=0.824 Sum_probs=40.0
Q ss_pred CCCCCeeeEeccCCCCC--CcccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 56 PSKLVECRICHEEDEDS--NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~--~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
.+....|-||++...++ ....||. +.+|..|+.+|++.+ ..|++|++++.+
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQKS--GTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTT-----EEEEHHHHHHHHTTT--CBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCC-----ChHHHHHHHHHHHcC--CcCcCcCccCCC
Confidence 45678999999875432 3467866 789999999999755 489999998864
No 13
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.65 E-value=2.9e-05 Score=55.50 Aligned_cols=51 Identities=24% Similarity=0.505 Sum_probs=41.8
Q ss_pred CCCCCeeeEeccCCCCCCcccc-cccCCCcccccHHHHHHHHHHhCCccccccccccc
Q 026324 56 PSKLVECRICHEEDEDSNMEIP-CSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~~L~~P-C~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (240)
..+...|.||++...+ +...| |. +..|..|+.+|+..++...|++|++++.
T Consensus 12 ~~~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 12 IPDELLCLICKDIMTD-AVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp SCGGGSCSSSCCCCTT-CEECSSSC-----CEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCCcCCChHHhC-CeEcCCCC-----CHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 3456789999887654 66778 75 7899999999999887789999999754
No 14
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.65 E-value=4.7e-05 Score=55.06 Aligned_cols=53 Identities=19% Similarity=0.491 Sum_probs=42.1
Q ss_pred CCCCCeeeEeccCCCC---CCcccccccCCCcccccHHHHHHHHHHh-CCcccccccccccc
Q 026324 56 PSKLVECRICHEEDED---SNMEIPCSCCGSLKYAHRKCVQRWCNEK-GDTTCEICREQYNP 113 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d---~~L~~PC~C~GslkyvH~~CL~~W~~~k-~~~~CEiCk~~y~~ 113 (240)
..+...|.||++...+ .+...||. +.+|..|+.+|++.+ +...|++|++.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCG-----HTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSS-----CEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred ccCCCCCccCCccccccCCCeEECCCC-----ChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 4456789999988643 25667875 789999999999876 46799999998864
No 15
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.63 E-value=1.7e-05 Score=54.78 Aligned_cols=51 Identities=25% Similarity=0.592 Sum_probs=39.0
Q ss_pred CCCCCeeeEeccCCCC----C--CcccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 56 PSKLVECRICHEEDED----S--NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d----~--~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
..+...|-||++...+ . ....||. +.+|..|+.+|++.+ ..|++|++++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHHC--SSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHcC--CCCCCCCCccCc
Confidence 3566789999987422 1 2567886 789999999999874 589999998763
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=1.7e-05 Score=56.04 Aligned_cols=51 Identities=22% Similarity=0.488 Sum_probs=40.4
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCccccccccccccC
Q 026324 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (240)
..+...|.||++...+ +...||. +..|..|+.+|+..+ ..|++|++.+...
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 12 SLTVPECAICLQTCVH-PVSLPCK-----HVFCYLCVKGASWLG--KRCALCRQEIPED 62 (71)
T ss_dssp SSSCCBCSSSSSBCSS-EEEETTT-----EEEEHHHHHHCTTCS--SBCSSSCCBCCHH
T ss_pred CCCCCCCccCCcccCC-CEEccCC-----CHHHHHHHHHHHHCC--CcCcCcCchhCHh
Confidence 3456789999987643 5667876 789999999999754 6899999998753
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=2.3e-05 Score=54.84 Aligned_cols=49 Identities=31% Similarity=0.805 Sum_probs=40.4
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCccccccccccccC
Q 026324 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (240)
Q Consensus 57 ~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (240)
.+...|.||++...+ ...||. +.+|..|+.+|+. +...|++|++++...
T Consensus 13 ~~~~~C~IC~~~~~~--~~~~Cg-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 13 TDEEECCICMDGRAD--LILPCA-----HSFCQKCIDKWSD--RHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCSSSCCSCCS--EEETTT-----EEECHHHHHHSSC--CCSSCHHHHHCTTCC
T ss_pred CCCCCCeeCCcCccC--cccCCC-----CcccHHHHHHHHH--CcCcCCCcCCcccCC
Confidence 456789999998765 778886 6799999999997 456899999988743
No 18
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=4e-05 Score=53.80 Aligned_cols=52 Identities=21% Similarity=0.442 Sum_probs=41.3
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHH-hCCcccccccccccc
Q 026324 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE-KGDTTCEICREQYNP 113 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~-k~~~~CEiCk~~y~~ 113 (240)
..+...|.||++...+ +...||. +.+|..|+.+|++. ++...|++|++++..
T Consensus 17 ~~~~~~C~IC~~~~~~-~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 17 LQEEVICPICLDILQK-PVTIDCG-----HNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCBCTTTCSBCSS-EEECTTC-----CEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CccCCEeccCCcccCC-eEEcCCC-----ChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 4567799999987654 5566875 77999999999975 456799999999864
No 19
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.55 E-value=0.00015 Score=51.61 Aligned_cols=52 Identities=27% Similarity=0.662 Sum_probs=41.7
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHH----hCCcccccccccccc
Q 026324 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE----KGDTTCEICREQYNP 113 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~----k~~~~CEiCk~~y~~ 113 (240)
..+...|.||++...+ +...||. +.+|..|+.+|+.. ++...|++|+..+..
T Consensus 16 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQ-PLSLDCG-----HSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCTTTCSCCSS-CBCCSSS-----CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred ccCCCCCCCCCcccCC-ceeCCCC-----CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 3456789999988654 5566876 67899999999987 357899999999875
No 20
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.54 E-value=8.9e-05 Score=52.88 Aligned_cols=51 Identities=25% Similarity=0.562 Sum_probs=41.4
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHh----CCcccccccccccc
Q 026324 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEK----GDTTCEICREQYNP 113 (240)
Q Consensus 57 ~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k----~~~~CEiCk~~y~~ 113 (240)
.+...|.||++...+ +...||. +.+|..|+.+|+..+ +...|++|+.++..
T Consensus 17 ~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKE-PVSADCN-----HSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSS-CEECTTS-----CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCc-ceeCCCC-----CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 456789999887654 5677875 679999999999984 47899999998864
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.51 E-value=5.8e-05 Score=52.44 Aligned_cols=51 Identities=16% Similarity=0.361 Sum_probs=40.0
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
..+...|.||++...+ +...||. +..|..|+.+|++ ++...|++|+.++..
T Consensus 12 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCS-PKQTECG-----HRFCESCMAALLS-SSSPKCTACQESIVK 62 (66)
T ss_dssp CCCCEECTTTCCEESS-CCCCSSS-----CCCCHHHHHHHHT-TSSCCCTTTCCCCCT
T ss_pred CCcCCCCCCCChHhcC-eeECCCC-----CHHHHHHHHHHHH-hCcCCCCCCCcCCCh
Confidence 4567889999887643 5557876 6789999999997 456689999998864
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.49 E-value=0.0001 Score=53.19 Aligned_cols=49 Identities=18% Similarity=0.467 Sum_probs=39.7
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCccccccccccc
Q 026324 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (240)
......|.||++...+ +...||. +..|..|+.+|++. ...|++|++++.
T Consensus 12 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQN-PVVTKCR-----HYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCS-EEECTTS-----CEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcC-eeEccCC-----CHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 3456789999887654 6678886 67899999999975 458999999986
No 23
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.45 E-value=8.9e-05 Score=52.42 Aligned_cols=51 Identities=18% Similarity=0.356 Sum_probs=40.0
Q ss_pred CCCCCeeeEeccCCCCCCcc-cccccCCCcccccHHHHHHHHHHhCCccccccccccccC
Q 026324 56 PSKLVECRICHEEDEDSNME-IPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~~L~-~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (240)
..+...|.||++...+ +.. .||. +..|..|+.+|++. ...|++|++++...
T Consensus 12 ~~~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 12 LTPYILCSICKGYLID-ATTITECL-----HTFCKSCIVRHFYY--SNRCPKCNIVVHQT 63 (72)
T ss_dssp CCGGGSCTTTSSCCSS-CEECSSSC-----CEECHHHHHHHHHH--CSSCTTTCCCCCSS
T ss_pred cCCCCCCCCCChHHHC-cCEECCCC-----CHHHHHHHHHHHHc--CCcCCCcCcccCcc
Confidence 3456789999887655 444 5886 67899999999976 45899999998753
No 24
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.44 E-value=7.5e-05 Score=55.04 Aligned_cols=54 Identities=20% Similarity=0.542 Sum_probs=40.5
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCccccccccccccC
Q 026324 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (240)
++....|-||++.-..+. .-+ .|. .-.|..||.+|++.++..+|++|++++...
T Consensus 12 ~~~i~~C~IC~~~i~~g~-~C~-~C~---h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQ-SCE-TCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSSCBCSSSCCBCSSSE-ECS-SSC---CEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred cCCCCcCcchhhHcccCC-ccC-CCC---chhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 346679999988764322 111 443 578999999999988778999999998743
No 25
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.43 E-value=3.8e-05 Score=53.51 Aligned_cols=51 Identities=25% Similarity=0.576 Sum_probs=39.7
Q ss_pred CCCCCeeeEeccCCCC------CCcccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 56 PSKLVECRICHEEDED------SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d------~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
+++...|-||++...+ .....||. +..|..|+.+|++.+ ..|++|++++..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINH 63 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCCBCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHcC--CCCCCCCCccCh
Confidence 4567789999987421 12567876 689999999999876 489999999874
No 26
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.40 E-value=0.00012 Score=53.73 Aligned_cols=52 Identities=21% Similarity=0.471 Sum_probs=42.8
Q ss_pred CCCCCCeeeEeccCCCCCCcccc-cccCCCcccccHHHHHHHHHHhCCccccccccccc
Q 026324 55 SPSKLVECRICHEEDEDSNMEIP-CSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (240)
Q Consensus 55 ~~~~~~~CRIC~e~~~d~~L~~P-C~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (240)
...+...|-||++... ++...| |. +..++.||.+|+..++...|++|+.++.
T Consensus 9 ~~~~~~~C~IC~~~~~-~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMT-DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECS-SCEECTTTC-----CEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhc-CceECCCCC-----CHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3456789999998765 367778 65 6789999999999888889999999974
No 27
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.39 E-value=6.4e-05 Score=58.48 Aligned_cols=48 Identities=21% Similarity=0.508 Sum_probs=35.3
Q ss_pred CCeeeEeccCCCCC-----------------CcccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 59 LVECRICHEEDEDS-----------------NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 59 ~~~CRIC~e~~~d~-----------------~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
...|-||++..++. ....||. +..|..||.+|+..+ .+|++|+++|..
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~~--~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKTR--QVCPLDNREWEF 101 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTS-----CEEEHHHHHHHHTTC--SBCSSSCSBCCE
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccC-----cEECHHHHHHHHHcC--CcCcCCCCccee
Confidence 35688887764321 1335665 789999999999764 589999999863
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.38 E-value=0.00011 Score=52.40 Aligned_cols=52 Identities=21% Similarity=0.399 Sum_probs=41.4
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 55 ~~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
...+.-.|.||++.-.+ +...||. +..++.|+.+|+.. +..+|++|++++..
T Consensus 4 ~~~~~~~C~IC~~~~~~-Pv~~~Cg-----H~fc~~Ci~~~~~~-~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKD-PVIVSTG-----QTYERSSIQKWLDA-GHKTCPKSQETLLH 55 (78)
T ss_dssp CCSSSSSCTTTSCCCSS-EEEETTT-----EEEEHHHHHHHHTT-TCCBCTTTCCBCSS
T ss_pred CCcccCCCCCccccccC-CEEcCCC-----CeecHHHHHHHHHH-CcCCCCCCcCCCCh
Confidence 34567899999887654 6777876 78999999999974 46789999998864
No 29
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.36 E-value=3e-05 Score=52.74 Aligned_cols=49 Identities=22% Similarity=0.565 Sum_probs=37.9
Q ss_pred CCCeeeEeccCCCC------CCcccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 58 KLVECRICHEEDED------SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 58 ~~~~CRIC~e~~~d------~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
+...|.||++...+ .....||. +..|..|+.+|++.+ ..|++|+.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHHC--SBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHcC--CCCCCCCccCCc
Confidence 45689999987422 12567876 689999999999874 589999998864
No 30
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.30 E-value=0.00025 Score=48.63 Aligned_cols=46 Identities=24% Similarity=0.510 Sum_probs=36.4
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHh-CCcccccc
Q 026324 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEK-GDTTCEIC 107 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k-~~~~CEiC 107 (240)
..+...|.||++...+ +...||. +..|+.|+.+|++.+ +...|++|
T Consensus 17 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQK-PVTIDCG-----HNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSS-CEECTTS-----SEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCC-eEEeCCC-----CcchHHHHHHHHHcCCCCCcCcCC
Confidence 4567799999987654 6666876 679999999999864 46789988
No 31
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.24 E-value=0.00023 Score=47.59 Aligned_cols=46 Identities=24% Similarity=0.683 Sum_probs=36.0
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHH-hCCcccccc
Q 026324 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE-KGDTTCEIC 107 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~-k~~~~CEiC 107 (240)
..+...|.||++...+ +...||. +..|..|+.+|++. ++...|++|
T Consensus 12 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKE-PVIIECG-----HNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSS-CCCCSSC-----CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCc-cEeCCCC-----CccCHHHHHHHHHhcCCCCCCCCC
Confidence 3456789999988754 5667876 67899999999875 456789887
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.08 E-value=8.5e-05 Score=52.76 Aligned_cols=52 Identities=25% Similarity=0.570 Sum_probs=41.5
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHh-----CCcccccccccccc
Q 026324 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEK-----GDTTCEICREQYNP 113 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k-----~~~~CEiCk~~y~~ 113 (240)
..+...|.||++...+ +...||. +..+..|+.+|++.+ +...|++|+.++..
T Consensus 9 ~~~~~~C~IC~~~~~~-p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 9 VQEEVTCPICLELLTE-PLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCEETTTTEECSS-CCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cccCCCCcCCCcccCC-eeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 3467899999987654 5667876 678999999999873 47799999999874
No 33
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=96.99 E-value=0.00027 Score=53.35 Aligned_cols=50 Identities=30% Similarity=0.663 Sum_probs=40.9
Q ss_pred CCCCeeeEeccCCCCCCcc-cccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 57 SKLVECRICHEEDEDSNME-IPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 57 ~~~~~CRIC~e~~~d~~L~-~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
.+...|-||++...+ +.. .||. +..|..||.+|+..++ ..|++|+.++..
T Consensus 20 ~~~~~C~IC~~~~~~-p~~~~~Cg-----H~FC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD-ARLCPHCS-----KLCCFSCIRRWLTEQR-AQCPHCRAPLQL 70 (100)
T ss_dssp HHHTBCTTTCSBCSS-EEECTTTC-----CEEEHHHHHHHHHHTC-SBCTTTCCBCCG
T ss_pred CCCCCCccCCccccC-ccccCCCC-----ChhhHHHHHHHHHHCc-CCCCCCCCcCCH
Confidence 355789999988754 555 8886 7899999999999875 689999999864
No 34
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.96 E-value=0.00014 Score=57.91 Aligned_cols=48 Identities=21% Similarity=0.508 Sum_probs=0.4
Q ss_pred CCeeeEeccCCCCC-----------------CcccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 59 LVECRICHEEDEDS-----------------NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 59 ~~~CRIC~e~~~d~-----------------~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
...|-||+++-++. .+..||. +..|..|+.+|++.+ ..|++|+++|..
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~-----H~FH~~CI~~Wl~~~--~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKTR--QVCPLDNREWEF 112 (117)
T ss_dssp C-----------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcC-----ceEcHHHHHHHHHcC--CcCCCCCCeeee
Confidence 35799998774321 1223565 789999999999875 489999999864
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.94 E-value=0.00054 Score=47.26 Aligned_cols=49 Identities=18% Similarity=0.370 Sum_probs=36.8
Q ss_pred CCeeeEecc-CCCC--CC-cccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 59 LVECRICHE-EDED--SN-MEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 59 ~~~CRIC~e-~~~d--~~-L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
...|-||++ ...+ .. +..||+ +.++..|+.+|+.. +...|++|+.++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTC-----CCEEHHHHHHHHHT-TSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCC-----CHhHHHHHHHHHHc-CCCcCCCCCCcccc
Confidence 457999998 3222 11 457887 67999999999864 45789999999864
No 36
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.85 E-value=0.00074 Score=50.85 Aligned_cols=50 Identities=24% Similarity=0.646 Sum_probs=39.7
Q ss_pred CCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHh-CCccccccccccccC
Q 026324 59 LVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEK-GDTTCEICREQYNPG 114 (240)
Q Consensus 59 ~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k-~~~~CEiCk~~y~~~ 114 (240)
...|.||++...+ +...||. +.+|..|+.+|+..+ +...|++|+..+...
T Consensus 21 ~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKE-PVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSS-CCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcC-eEECCCC-----CHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 4589999987643 5667876 788999999999875 457899999988753
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.80 E-value=0.00076 Score=52.34 Aligned_cols=49 Identities=18% Similarity=0.425 Sum_probs=39.2
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 58 ~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
+...|.||++...+ +...||. +..|..|+.+|+. .+...|++|+..+..
T Consensus 51 ~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR-PITTVCQ-----HNVCKDCLDRSFR-AQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS-EEECTTS-----CEEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC-cEEeeCC-----CcccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence 34689999987653 6667876 6789999999998 345689999999975
No 38
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.77 E-value=0.00033 Score=55.66 Aligned_cols=46 Identities=26% Similarity=0.696 Sum_probs=37.3
Q ss_pred CCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCccccccccccc
Q 026324 59 LVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (240)
Q Consensus 59 ~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (240)
...|.||++...+ +...||+ +..|..|+.+|+..+ ..|++|++++.
T Consensus 53 ~~~C~iC~~~~~~-~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYFIE-AVTLNCA-----HSFCSYCINEWMKRK--IECPICRKDIK 98 (138)
T ss_dssp HSBCTTTCSBCSS-EEEETTS-----CEEEHHHHHHHTTTC--SBCTTTCCBCC
T ss_pred cCCCcccCcccCC-ceECCCC-----CCccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 3479999987654 6677875 789999999999754 58999999885
No 39
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.77 E-value=0.0011 Score=48.52 Aligned_cols=53 Identities=32% Similarity=0.638 Sum_probs=41.9
Q ss_pred CCCCeeeEeccCCC-CCCcccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 57 SKLVECRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 57 ~~~~~CRIC~e~~~-d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
++...|-||++... +.....||.|. +.+++.|+.+|... +...|++|+++|..
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CG---H~fC~~Cl~~~~~~-~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCG---YQICRFCWHRIRTD-ENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTS---CCCCHHHHHHHTTS-SCSBCTTTCCBCSS
T ss_pred ccCCcCCccCccCccccccccccCCC---CCcCHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 45678999999764 34567888884 66899999998754 56799999999974
No 40
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=96.74 E-value=0.00048 Score=51.35 Aligned_cols=48 Identities=29% Similarity=0.555 Sum_probs=38.0
Q ss_pred CCCeeeEeccCCCCCCccc-ccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 58 KLVECRICHEEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 58 ~~~~CRIC~e~~~d~~L~~-PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
+...|.||++...+ +... ||+ +..|..|+.+|+..+ ..|++|+..+..
T Consensus 21 ~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNI-AMIIPQCS-----HNYCSLCIRKFLSYK--TQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSS-EEECTTTC-----CEEEHHHHHHHHTTC--CBCTTTCCBCCG
T ss_pred CCCCcccCChhhCC-cCEECCCC-----CHhhHHHHHHHHHCC--CCCCCCCCcCCh
Confidence 45689999988654 4444 776 689999999999854 589999998874
No 41
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.70 E-value=0.00027 Score=54.18 Aligned_cols=51 Identities=24% Similarity=0.518 Sum_probs=39.6
Q ss_pred CCCCeeeEeccCCCC------CCcccccccCCCcccccHHHHHHHHHHhCCccccccccccccC
Q 026324 57 SKLVECRICHEEDED------SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (240)
Q Consensus 57 ~~~~~CRIC~e~~~d------~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (240)
++...|-||++...+ .....||. +..|..|+.+|++.+. .|++|++.+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNAN--TCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTTCS--BCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHhCC--CCCCCCCcCccc
Confidence 456789999987432 12677887 7899999999997654 899999998743
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=96.62 E-value=0.0007 Score=55.00 Aligned_cols=49 Identities=20% Similarity=0.502 Sum_probs=38.3
Q ss_pred CCCeeeEeccCCCCCCccc-ccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 58 KLVECRICHEEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 58 ~~~~CRIC~e~~~d~~L~~-PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
....|-||++...+ +... ||. +.+|..|+.+|+.. +...|++|+..+..
T Consensus 53 ~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN-TMTTKECL-----HRFCADCIITALRS-GNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS-EEEETTTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC-cCEeCCCC-----ChhHHHHHHHHHHh-CcCCCCCCCCcCCC
Confidence 44589999887654 4444 776 78999999999984 35689999999853
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=96.43 E-value=0.0014 Score=50.51 Aligned_cols=52 Identities=19% Similarity=0.447 Sum_probs=41.2
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCccccccccccccC
Q 026324 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (240)
..+...|.||++...+ +...||. +..+..|+.+|+..++. .|++|+.++...
T Consensus 15 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~~ 66 (118)
T 3hct_A 15 LESKYECPICLMALRE-AVQTPCG-----HRFCKACIIKSIRDAGH-KCPVDNEILLEN 66 (118)
T ss_dssp CCGGGBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHHHCS-BCTTTCCBCCGG
T ss_pred CCCCCCCCcCChhhcC-eEECCcC-----ChhhHHHHHHHHhhCCC-CCCCCCCCcCHH
Confidence 4456789999977653 5667775 67999999999988754 899999998753
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=96.42 E-value=0.0016 Score=52.94 Aligned_cols=50 Identities=20% Similarity=0.436 Sum_probs=39.9
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCccccccccccccC
Q 026324 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (240)
Q Consensus 58 ~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (240)
+...|.||++...+ +...||. +.++..|+.+|+.. +...|++|+..+...
T Consensus 77 ~~~~C~IC~~~~~~-pv~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ-PVTTECF-----HNVCKDCLQRSFKA-QVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS-EEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC-CEEcCCC-----CchhHHHHHHHHHh-CCCcCCCCCccCCCC
Confidence 34689999887653 6667886 67899999999985 446899999998754
No 45
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.39 E-value=0.00073 Score=51.23 Aligned_cols=48 Identities=23% Similarity=0.483 Sum_probs=38.6
Q ss_pred CCCeeeEeccCCCCCCccc-ccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 58 KLVECRICHEEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 58 ~~~~CRIC~e~~~d~~L~~-PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
+...|.||++...+ +... ||. +..|..|+.+|+..+ ..|++|+..+..
T Consensus 14 ~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFID-ATTIIECL-----HSFCKTCIVRYLETS--KYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSS-EEEETTTC-----CEEEHHHHHHHHTSC--SBCTTTCCBSCS
T ss_pred CcCCCccCChHHhC-cCEeCCCC-----ChhhHHHHHHHHHhC--CcCcCCCccccc
Confidence 45689999887654 5554 886 678999999999765 689999998864
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=96.36 E-value=0.00085 Score=51.37 Aligned_cols=50 Identities=28% Similarity=0.566 Sum_probs=39.9
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCccccccccccccC
Q 026324 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (240)
Q Consensus 58 ~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (240)
+...|.||++...+ +...||. +..+..|+.+|+..+ ...|++|+.++...
T Consensus 22 ~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 22 KSISCQICEHILAD-PVETSCK-----HLFCRICILRCLKVM-GSYCPSCRYPCFPT 71 (116)
T ss_dssp HHTBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHHT-CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcHhcC-cEEcCCC-----CcccHHHHHHHHhHC-cCcCCCCCCCCCHh
Confidence 45689999887654 6667876 678999999999875 35899999998753
No 47
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.36 E-value=0.0017 Score=60.98 Aligned_cols=58 Identities=21% Similarity=0.669 Sum_probs=42.6
Q ss_pred CCCCCeeeEeccCCCC-CCc-ccccc---cCCCcccccHHHHHHHHHHhCC---------ccccccccccccCcc
Q 026324 56 PSKLVECRICHEEDED-SNM-EIPCS---CCGSLKYAHRKCVQRWCNEKGD---------TTCEICREQYNPGYT 116 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d-~~L-~~PC~---C~GslkyvH~~CL~~W~~~k~~---------~~CEiCk~~y~~~yt 116 (240)
.....+|-||++.-.+ +.+ ...|. |+ +..|..||.+|++..++ ..|+.|+++....|.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~---h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~ 376 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCV---LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFA 376 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCC---CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccC---CccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHH
Confidence 3567899999988643 332 34564 54 78999999999987532 589999998876543
No 48
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=96.11 E-value=0.0027 Score=59.87 Aligned_cols=50 Identities=26% Similarity=0.662 Sum_probs=39.9
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCccccccccccccC
Q 026324 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (240)
Q Consensus 58 ~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (240)
....|.||++...+ +...||. +..|..|+.+|+.. +...|++|+.++...
T Consensus 331 ~~~~C~ICle~~~~-pv~lpCG-----H~FC~~Ci~~wl~~-~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDKD-VKIEPCG-----HLMCTSCLTSWQES-EGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBCC-EEEETTC-----CEECHHHHHHHHHH-TCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCCC-eEEeCCC-----ChhhHHHHHHHHhc-CCCCCCCCCCccCCc
Confidence 34799999887643 6778987 45799999999984 456899999988753
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=95.75 E-value=0.002 Score=49.23 Aligned_cols=51 Identities=24% Similarity=0.535 Sum_probs=38.5
Q ss_pred CCCCeeeEeccCCCC----C--CcccccccCCCcccccHHHHHHHHHHhCCccccccccccccC
Q 026324 57 SKLVECRICHEEDED----S--NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (240)
Q Consensus 57 ~~~~~CRIC~e~~~d----~--~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (240)
++...|-||++...+ . ....||. +..|..|+.+|++.+. .|++|+..+..+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNAN--TCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTS-----BEEEHHHHHHHHHHCS--BCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCC-----ChhhHHHHHHHHHcCC--CCCCCCCcCChh
Confidence 456789999876421 1 2456665 7899999999998754 899999998753
No 50
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=95.65 E-value=0.012 Score=43.35 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=40.1
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
..+.-.|-||++--.+ +...||+ +-.-+.|+++|+.. ..+|++|++++..
T Consensus 11 ~p~~~~CpI~~~~m~d-PV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTD-PVRLPSG-----TVMDRSIILRHLLN--SPTDPFNRQMLTE 60 (85)
T ss_dssp CCTTTBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred CchheECcccCchhcC-CeECCCC-----CEECHHHHHHHHhc--CCCCCCCcCCCCh
Confidence 3467899999887654 7888874 56789999999985 4689999998864
No 51
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=95.63 E-value=0.0015 Score=49.96 Aligned_cols=50 Identities=22% Similarity=0.555 Sum_probs=39.4
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 57 ~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
.+...|.||++...+ +...||. +..+..|+.+|+.. +...|++|++.+..
T Consensus 13 ~~~~~C~iC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVE-PVTLPCN-----HTLCKPCFQSTVEK-ASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSS-CEECTTS-----CEECHHHHCCCCCT-TTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCc-eeEcCCC-----CHHhHHHHHHHHhH-CcCCCCCCCcccCc
Confidence 345689999987653 6667876 67999999999964 34789999999863
No 52
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.33 E-value=0.011 Score=50.35 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=40.1
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 57 ~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
...-.|-||++--.+ |.+.||+ +-.-+.|+.+|+..++.. |++|+.++..
T Consensus 206 ~~~~~c~i~~~~~~d-Pv~~~~g-----h~f~~~~i~~~~~~~~~~-cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMRE-PCITPSG-----ITYDRKDIEEHLQRVGHF-NPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSS-EEECSSC-----CEEETTHHHHHHHHTCSS-CTTTCCCCCG
T ss_pred CcccCCcCcCCHhcC-CeECCCC-----CEECHHHHHHHHHHCCCC-CcCCCCCCch
Confidence 456789999887654 8889975 567799999999876644 9999998864
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=94.80 E-value=0.0088 Score=41.58 Aligned_cols=50 Identities=20% Similarity=0.531 Sum_probs=36.8
Q ss_pred CCCCCeeeEeccCCCCCC-cccccccCCCccc-ccHHHHHHHHHHhCCccccccccccc
Q 026324 56 PSKLVECRICHEEDEDSN-MEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYN 112 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~~-L~~PC~C~Gslky-vH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (240)
.+....|.||++...+.. +..||+ +. +=..|+.+|.+.+ ..|++|++++.
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~pCg-----H~~~C~~C~~~~~~~~--~~CPiCR~~i~ 55 (63)
T 2vje_B 4 QNLLKPCSLCEKRPRDGNIIHGRTG-----HLVTCFHCARRLKKAG--ASCPICKKEIQ 55 (63)
T ss_dssp GGGGSBCTTTSSSBSCEEEEETTEE-----EEEECHHHHHHHHHTT--CBCTTTCCBCC
T ss_pred CCcCCCCcccCCcCCCeEEEecCCC-----CHhHHHHHHHHHHHhC--CcCCCcCchhh
Confidence 345678999998764422 235987 44 5789999998654 58999999875
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.76 E-value=0.0078 Score=46.24 Aligned_cols=46 Identities=22% Similarity=0.464 Sum_probs=37.2
Q ss_pred CCCeeeEeccCCCCCCccc-ccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 58 KLVECRICHEEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 58 ~~~~CRIC~e~~~d~~L~~-PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
+...|.||++...+ +... ||. +..++.|+.+|+. ..|++|+..+..
T Consensus 21 ~~~~C~IC~~~~~~-pv~~~~Cg-----H~fC~~Ci~~~~~----~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILRE-PVCLGGCE-----HIFCSNCVSDCIG----TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCSS-CBCCCSSS-----CCBCTTTGGGGTT----TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhhC-ccEeCCCC-----CHHHHHHHHHHhc----CCCcCCCCcCcc
Confidence 46789999887654 5555 886 7889999999987 689999999853
No 55
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=94.65 E-value=0.021 Score=43.45 Aligned_cols=50 Identities=12% Similarity=0.118 Sum_probs=40.2
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
..+.-.|-||++--.+ |...||+ +-.-+.|+.+|+.. ..+|++|++++..
T Consensus 26 ~p~~~~CpI~~~~m~d-PV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 75 (100)
T 2kre_A 26 APDEFRDPLMDTLMTD-PVRLPSG-----TIMDRSIILRHLLN--SPTDPFNRQTLTE 75 (100)
T ss_dssp CSTTTBCTTTCSBCSS-EEEETTT-----EEEEHHHHHHHTTS--CSBCSSSCCBCCT
T ss_pred CcHhhCCcCccCcccC-CeECCCC-----CEEchHHHHHHHHc--CCCCCCCCCCCCh
Confidence 3567899999887654 8888874 56889999999974 5689999999864
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=94.53 E-value=0.0066 Score=43.31 Aligned_cols=44 Identities=18% Similarity=0.561 Sum_probs=35.5
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCccc-ccHHHHHHHHHHhCCcccccccccccc
Q 026324 58 KLVECRICHEEDEDSNMEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 58 ~~~~CRIC~e~~~d~~L~~PC~C~Gslky-vH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
+...|.||++...+ +...||. +. ....|+.+| ..|++|+..+..
T Consensus 23 ~~~~C~iC~~~~~~-~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIA-IVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCC-EEEETTC-----CBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCC-EEEcCCC-----ChhHHHHhhhcC------ccCCCcCcCccC
Confidence 44689999987643 6677986 56 899999999 689999998864
No 57
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.45 E-value=0.031 Score=41.63 Aligned_cols=50 Identities=20% Similarity=0.366 Sum_probs=39.0
Q ss_pred CCCCCCeeeEeccCCCCCCcccc-cccCCCcccccHHHHHHHHHHh----CCccccc--cccc
Q 026324 55 SPSKLVECRICHEEDEDSNMEIP-CSCCGSLKYAHRKCVQRWCNEK----GDTTCEI--CREQ 110 (240)
Q Consensus 55 ~~~~~~~CRIC~e~~~d~~L~~P-C~C~GslkyvH~~CL~~W~~~k----~~~~CEi--Ck~~ 110 (240)
+....-.|-||++--.+ |...| |. +-.-+.||.+|+... +..+|++ |...
T Consensus 3 ~~~~~~~CPI~~~~~~d-PV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKK-PVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCSSCCBCTTTCSBCSS-EEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCCcEeECcCcCchhcC-CEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 44566789999887654 77776 76 567899999999875 4679999 8866
No 58
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=94.45 E-value=0.037 Score=41.88 Aligned_cols=51 Identities=18% Similarity=0.066 Sum_probs=39.7
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
..+.-.|-||++--.+ |...||. | +-.-+.||++|+.. ..+|++|++++..
T Consensus 19 ~p~~~~CpI~~~~m~d-PV~~~cG--~--htf~r~cI~~~l~~--~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCD-PVVLPSS--R--VTVDRSTIARHLLS--DQTDPFNRSPLTM 69 (98)
T ss_dssp CCTTTBCTTTCSBCSS-EEECTTT--C--CEEEHHHHHHHTTT--SCBCTTTCSBCCT
T ss_pred CcHhcCCcCccccccC-CeECCCC--C--eEECHHHHHHHHHh--CCCCCCCCCCCCh
Confidence 3457789999887654 7788866 1 35779999999986 4589999999874
No 59
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=94.38 E-value=0.0063 Score=48.96 Aligned_cols=51 Identities=14% Similarity=0.309 Sum_probs=39.5
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCccccccccccc
Q 026324 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (240)
Q Consensus 55 ~~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (240)
...+.-.|-||++...+ +...||. +..++.|+.+|++. +...|++|+.+..
T Consensus 27 ~l~~~~~C~IC~~~~~~-pv~~~Cg-----H~FC~~Ci~~~~~~-~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRR-PFQAQCG-----HRYCSFCLASILSS-GPQNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHGGG-SCEECHHHHHTTC
T ss_pred cCCcCcCCCCCChhhcC-cEECCCC-----CccCHHHHHHHHhc-CCCCCCCCCCccc
Confidence 34567789999987654 5667776 67899999999964 4568999998653
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=94.33 E-value=0.021 Score=46.34 Aligned_cols=52 Identities=19% Similarity=0.447 Sum_probs=40.9
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCccccccccccccC
Q 026324 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (240)
..+.-.|-||++...+ +...||. +.+.+.|+.+|++.++. .|++|+.++...
T Consensus 15 ~~~~~~C~IC~~~~~~-pv~~~Cg-----H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 15 LESKYECPICLMALRE-AVQTPCG-----HRFCKACIIKSIRDAGH-KCPVDNEILLEN 66 (170)
T ss_dssp CCGGGBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHHHCS-BCTTTCCBCCGG
T ss_pred CCCCCCCCCCChhhcC-cEECCCC-----CHHHHHHHHHHHHhCCC-CCCCCccCcchh
Confidence 4566789999987654 5666765 67899999999987654 899999988753
No 61
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=94.27 E-value=0.016 Score=40.35 Aligned_cols=47 Identities=17% Similarity=0.516 Sum_probs=34.9
Q ss_pred CCCeeeEeccCCCCCCccc--ccccCCCccc-ccHHHHHHHHHHhCCccccccccccc
Q 026324 58 KLVECRICHEEDEDSNMEI--PCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYN 112 (240)
Q Consensus 58 ~~~~CRIC~e~~~d~~L~~--PC~C~Gslky-vH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (240)
+...|.||++...+ .... ||+ +. +=..|+.+|.+.+ ..|++|++++.
T Consensus 7 ~~~~C~IC~~~~~~-~~~~~~pCg-----H~~~C~~C~~~~~~~~--~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKN-GCIVHGKTG-----HLMACFTCAKKLKKRN--KPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSC-EEEEETTEE-----EEEECHHHHHHHHHTT--CCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCC-EEEECCCCC-----ChhhHHHHHHHHHHcC--CcCCCcCcchh
Confidence 45689999987654 3433 987 44 3489999999643 48999999875
No 62
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.17 E-value=0.012 Score=39.65 Aligned_cols=46 Identities=20% Similarity=0.558 Sum_probs=35.4
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 57 ~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
.+...|.||++...+ +...||. +..+..|+.+| ...|++|++++..
T Consensus 4 ~~~~~C~IC~~~~~~-p~~l~Cg-----H~fC~~Ci~~~-----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC-PKLLPCL-----HTLCSGCLEAS-----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBC-CSCSTTS-----CCSBTTTCSSS-----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCC-eEEcCCC-----CcccHHHHccC-----CCCCCcCCcEeec
Confidence 356779999887654 6778876 56789998873 5689999998864
No 63
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=93.27 E-value=0.049 Score=47.67 Aligned_cols=52 Identities=21% Similarity=0.574 Sum_probs=39.8
Q ss_pred CCCCeeeEeccCCCCCCcccccc-cCCCcccccHHHHHHHHHHhCCccccccccccccC
Q 026324 57 SKLVECRICHEEDEDSNMEIPCS-CCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (240)
Q Consensus 57 ~~~~~CRIC~e~~~d~~L~~PC~-C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (240)
+....|-||.+--..+ .-|. |. .-.|..|+.+|++.++...|+.|+..++..
T Consensus 178 ~~i~~C~iC~~iv~~g---~~C~~C~---~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 178 DAVKICNICHSLLIQG---QSCETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TTCCBCTTTCSBCSSC---EECSSSC---CEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCCcCcchhhHHhCC---cccCccC---hHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 3588999998765322 2332 44 579999999999988888999999987643
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.25 E-value=0.095 Score=36.95 Aligned_cols=46 Identities=20% Similarity=0.533 Sum_probs=34.5
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCccc-ccHHHHHHHHHHhCCcccccccccccc
Q 026324 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~~L~~PC~C~Gslky-vH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
..+...|.||++... +....||. +. +-..|+++ ...|++|++++..
T Consensus 12 ~~~~~~C~IC~~~~~-~~v~~pCg-----H~~~C~~C~~~------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTV-NWVLLPCR-----HTCLCDGCVKY------FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCC-CCEETTTT-----BCCSCTTHHHH------CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCC-CEEEECCC-----ChhhhHHHHhc------CCCCCCCCcchhc
Confidence 345678999998764 36788997 34 66788873 3689999998864
No 65
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=93.02 E-value=0.051 Score=45.95 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=41.0
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
....-.|-||++--.+ |.+.||+ +-.=+.|+.+|+...+. +|++|+.++..
T Consensus 103 ip~~f~CPI~~elm~D-PV~~~~G-----htfer~~I~~~l~~~~~-tcP~t~~~l~~ 153 (179)
T 2f42_A 103 IPDYLCGKISFELMRE-PCITPSG-----ITYDRKDIEEHLQRVGH-FDPVTRSPLTQ 153 (179)
T ss_dssp CCGGGBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHHTCS-BCTTTCCBCCG
T ss_pred CcHhhcccCccccCCC-CeECCCC-----CEECHHHHHHHHHhCCC-CCCCCcCCCCh
Confidence 3467789999887654 8888875 56789999999988665 79999998864
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.73 E-value=0.054 Score=39.86 Aligned_cols=49 Identities=20% Similarity=0.449 Sum_probs=37.4
Q ss_pred CCCeeeEeccCCCCCCcc--cccccCCCcccccHHHHHHHHHHh---C---Cccccc--ccccc
Q 026324 58 KLVECRICHEEDEDSNME--IPCSCCGSLKYAHRKCVQRWCNEK---G---DTTCEI--CREQY 111 (240)
Q Consensus 58 ~~~~CRIC~e~~~d~~L~--~PC~C~GslkyvH~~CL~~W~~~k---~---~~~CEi--Ck~~y 111 (240)
+...|-||++...+..+. .||. +..-+.|+.+++..+ + ...|+. |+..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~Cg-----H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQ-----CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTT-----EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CCcCCcccCcccccccceEcCCCC-----CcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 456899999886544443 4787 689999999999864 2 479999 99884
No 67
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.55 E-value=0.057 Score=38.28 Aligned_cols=44 Identities=18% Similarity=0.572 Sum_probs=33.5
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCccc-ccHHHHHHHHHHhCCcccccccccccc
Q 026324 58 KLVECRICHEEDEDSNMEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 58 ~~~~CRIC~e~~~d~~L~~PC~C~Gslky-vH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
+...|.||++... ++...||. +. +...|+++. ..|++|+.++..
T Consensus 24 ~~~~C~IC~~~~~-~~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNI-AIVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCC-CBCCSSSC-----CCCBCHHHHHHC------SBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCC-CEEEecCC-----CHHHHHHHhhCC------CCCccCCceecC
Confidence 3468999998764 36778986 45 788998643 689999998864
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=86.81 E-value=0.1 Score=48.09 Aligned_cols=44 Identities=23% Similarity=0.663 Sum_probs=35.7
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCccc-ccHHHHHHHHHHhCCcccccccccccc
Q 026324 58 KLVECRICHEEDEDSNMEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 58 ~~~~CRIC~e~~~d~~L~~PC~C~Gslky-vH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
+...|.||++...+ +...||. +. +...|+.+| ..|++|+.++..
T Consensus 294 ~~~~C~IC~~~~~~-~v~lpCg-----H~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS-VVFIPCG-----HLVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC-EEEETTC-----CEEECTTTGGGC------SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc-eEEcCCC-----ChhHhHHHHhcC------CcCCCCCCCccC
Confidence 45799999987643 6677987 45 889999998 589999999864
No 69
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=85.60 E-value=0.27 Score=34.99 Aligned_cols=53 Identities=13% Similarity=0.308 Sum_probs=36.9
Q ss_pred CCCCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHH--hCCcccccccccc
Q 026324 53 GSSPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQY 111 (240)
Q Consensus 53 ~~~~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiCk~~y 111 (240)
+..+.....|.||.+.+ .|+ -| .+=-+..|..||.-.+.. ++++.|..|...-
T Consensus 6 ~~~~~~~~~C~vC~~~~---~ll-~C--d~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 6 QQNLAPGARCGVCGDGT---DVL-RC--THCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTCCCTTTSCCT---TCE-EC--SSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred ccCCCCCCCcCCCCCCC---eEE-EC--CCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 34455667899997543 333 23 333479999999877765 4789999997654
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=83.60 E-value=0.53 Score=32.54 Aligned_cols=46 Identities=11% Similarity=0.197 Sum_probs=33.6
Q ss_pred CeeeEeccCCCCCCccc-ccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 60 VECRICHEEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 60 ~~CRIC~e~~~d~~L~~-PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
-.|.||++--.+ +.+. ||. .-.=+.|+++|+++.+ +|+++++++..
T Consensus 4 ~~CpIs~~~m~d-PV~~~~sG-----~~yer~~I~~~l~~~~--~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRR-PVLSPKSR-----TIFEKSLLEQYVKDTG--NDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSS-EEEETTTT-----EEEEHHHHHHHHHHHS--BCTTTCCBCCG
T ss_pred EEecCCCCCCCC-CEEeCCCC-----cEEcHHHHHHHHHhCC--CCcCCcCCCCh
Confidence 467787766543 5555 443 4678999999998765 59999988864
No 71
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=83.28 E-value=0.24 Score=35.80 Aligned_cols=44 Identities=23% Similarity=0.640 Sum_probs=33.0
Q ss_pred CCeeeEeccCCCCCCcccccccCCCccc-ccHHHHHHHHHHhCCccccccccccccC
Q 026324 59 LVECRICHEEDEDSNMEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYNPG 114 (240)
Q Consensus 59 ~~~CRIC~e~~~d~~L~~PC~C~Gslky-vH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (240)
...|.||++...+ ....||. +. +=..|+.+| ..|++|+.++...
T Consensus 18 ~~~C~IC~~~~~~-~v~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEIN-STFCPCG-----HTVCCESCAAQL------QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCC-EEEETTC-----BCCBCHHHHTTC------SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCc-EEEECCC-----CHHHHHHHHHhc------CcCCCCCchhhCe
Confidence 4589999887643 6778987 33 457898877 3999999988643
No 72
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=82.36 E-value=0.76 Score=34.87 Aligned_cols=54 Identities=22% Similarity=0.528 Sum_probs=35.3
Q ss_pred CCCCCCCCeeeEeccCCCCCCccc--ccccCCCcccccHHHHHHHHHH--hCCccccccccccc
Q 026324 53 GSSPSKLVECRICHEEDEDSNMEI--PCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQYN 112 (240)
Q Consensus 53 ~~~~~~~~~CRIC~e~~~d~~L~~--PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiCk~~y~ 112 (240)
+..+.+...| ||...+. +.|+. -|.|+ ..|.|..|+. +.. ++.+.|+.|...-+
T Consensus 30 ~~d~~e~~yC-iC~~~~~-g~MI~CD~~dC~--~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 30 PVDPNEPTYC-LCHQVSY-GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCCSCCCBCS-TTCCBCC-SCCCCCSCSSCS--CCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CcCCCCCcEE-ECCCCCC-CCEeEecCCCCC--CCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 4455677888 9987653 34542 23353 2699999997 333 46899999976543
No 73
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=81.57 E-value=0.65 Score=41.71 Aligned_cols=52 Identities=15% Similarity=0.274 Sum_probs=40.0
Q ss_pred CCCCCeeeEeccCCCCCCccc-ccccCCCcccccHHHHHHHHHHhCCccccc--ccccccc
Q 026324 56 PSKLVECRICHEEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGDTTCEI--CREQYNP 113 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~~L~~-PC~C~GslkyvH~~CL~~W~~~k~~~~CEi--Ck~~y~~ 113 (240)
......|-||++--.+ |... .|+ +-.=+.|+.+|+..++...|++ |++.+..
T Consensus 178 ~~~el~CPIcl~~f~D-PVts~~CG-----HsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 178 GKIELTCPITCKPYEA-PLISRKCN-----HVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp SBCCSBCTTTSSBCSS-EEEESSSC-----CEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred CceeeECcCccCcccC-CeeeCCCC-----CcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 3566789999876543 5543 554 5678999999998877889999 9998864
No 74
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=75.46 E-value=8.1 Score=29.55 Aligned_cols=54 Identities=26% Similarity=0.583 Sum_probs=38.4
Q ss_pred CCCCeeeEeccCC---CCCCcccccccCCCcccccHHHHHHHHHHhCCcccccccccccc
Q 026324 57 SKLVECRICHEED---EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (240)
Q Consensus 57 ~~~~~CRIC~e~~---~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (240)
.....|.||-++- .++.+..-|+=.+ --|=+.|++-=+++ ++..|+.||.+|+-
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~--FPvCrpCyEYErke-G~q~CpqCktrYkr 70 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECG--FPACRPCYEYERRE-GTQNCPQCKTRYKR 70 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSC--CCCCHHHHHHHHHT-SCSSCTTTCCCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccC--ChhhHHHHHHHHhc-cCccccccCCcccc
Confidence 3567999998773 4566666665332 24778898765544 67899999999973
No 75
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=69.04 E-value=1.1 Score=32.09 Aligned_cols=52 Identities=23% Similarity=0.556 Sum_probs=33.6
Q ss_pred CCCCCCCeeeEeccCCCCCCccc--ccccCCCcccccHHHHHHHHHH--hCCcccccccccc
Q 026324 54 SSPSKLVECRICHEEDEDSNMEI--PCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQY 111 (240)
Q Consensus 54 ~~~~~~~~CRIC~e~~~d~~L~~--PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiCk~~y 111 (240)
..+.+...| ||...+. +.|+. -|.|. ..+.|..|+. +.. ++.+.|+.|...-
T Consensus 11 ~d~~~~~~C-~C~~~~~-g~MI~CD~~~C~--~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 11 VDPNEPTYC-LCHQVSY-GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCTTSCCCS-TTCCCSC-SSEECCSCSSCS--CCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred cCCCCCCEE-ECCCCCC-CCEeEeeCCCCC--CccEecccCC--cCcCCCCCEECCCCCccc
Confidence 445667788 8977653 45553 12243 2699999998 433 4788999996543
No 76
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=63.69 E-value=1.2 Score=32.09 Aligned_cols=53 Identities=17% Similarity=0.321 Sum_probs=34.3
Q ss_pred CCCCCCeeeEeccCC--CCCCcccccccCCCcccccHHHHHHHHHHhCCccccccccc
Q 026324 55 SPSKLVECRICHEED--EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQ 110 (240)
Q Consensus 55 ~~~~~~~CRIC~e~~--~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~ 110 (240)
.......|.||...+ +++.|+ -|. +=-+.+|..|+.--..-+|++.|+.|...
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll-~CD--~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVIL-FCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEE-ECS--SSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEE-ECC--CCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 345667899998775 233443 333 33368999998643344678889888653
No 77
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=62.91 E-value=1.3 Score=33.68 Aligned_cols=51 Identities=20% Similarity=0.339 Sum_probs=32.1
Q ss_pred CCCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHH--hCCcccccc
Q 026324 54 SSPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEIC 107 (240)
Q Consensus 54 ~~~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiC 107 (240)
+...+...|.||.+.++.++|+ -| .+=-+..|..||.-.... ++.+.|.-|
T Consensus 2 s~~~~~~~C~~C~~~g~~~~ll-~C--~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C 54 (111)
T 2ysm_A 2 SSGSSGANCAVCDSPGDLLDQF-FC--TTCGQHYHGMCLDIAVTPLKRAGWQCPEC 54 (111)
T ss_dssp CCCCCCSCBTTTCCCCCTTTSE-EC--SSSCCEECTTTTTCCCCTTTSTTCCCTTT
T ss_pred CCCCCCCCCcCCCCCCCCcCCe-EC--CCCCCCcChHHhCCccccccccCccCCcC
Confidence 3445777899998877544554 33 333478999999876543 345544444
No 78
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=62.86 E-value=1.1 Score=33.45 Aligned_cols=55 Identities=20% Similarity=0.370 Sum_probs=34.8
Q ss_pred CCCCCCeeeEeccCC-CCCCcccccccCCCcccccHHHHHHHHHHhCCcccccccccc
Q 026324 55 SPSKLVECRICHEED-EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQY 111 (240)
Q Consensus 55 ~~~~~~~CRIC~e~~-~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y 111 (240)
...+...|.||...+ .+.+...-|. +=-..+|..|+.--..-++.+.|..|...-
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD--~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECS--SSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECC--CCCchhhcccCCCCccCCCceECccccCcc
Confidence 345668899998765 2222233333 333578999986433445788899886544
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=58.19 E-value=1.3 Score=31.40 Aligned_cols=53 Identities=21% Similarity=0.387 Sum_probs=34.7
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHH--hCCccccccccccc
Q 026324 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQYN 112 (240)
Q Consensus 57 ~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiCk~~y~ 112 (240)
.+...|.||...+++..|+. |.+=-.+.|..|+.--... .+.+.|+.|.....
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~---CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIG---CDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEE---CSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEE---cCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 34567999987764444543 3343489999998754433 26788999976553
No 80
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=57.89 E-value=2 Score=28.24 Aligned_cols=46 Identities=26% Similarity=0.642 Sum_probs=29.2
Q ss_pred eeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHH--hCCcccccccc
Q 026324 61 ECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICRE 109 (240)
Q Consensus 61 ~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiCk~ 109 (240)
.|.||...++++.|+. |.+=-+..|..|+.-=+.+ ++.+.|..|..
T Consensus 2 ~C~vC~~~~~~~~ll~---Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLIL---CDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEE---CTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEE---CCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 5888987765444442 3344478999998532222 46788888854
No 81
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=55.39 E-value=16 Score=24.30 Aligned_cols=30 Identities=27% Similarity=0.513 Sum_probs=18.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q 026324 208 LLILRTIGILLPIYVMVKAFTAIQRRRHQQV 238 (240)
Q Consensus 208 ~~llraaGillP~Yi~~rai~~~q~~r~q~~ 238 (240)
....-+.| +|-+.|++-++-.+-|||+||+
T Consensus 13 ~Ia~~vVG-vll~vi~~l~~~~~~RRR~~~~ 42 (44)
T 2jwa_A 13 SIISAVVG-ILLVVVLGVVFGILIKRRQQKI 42 (44)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHCSCC
T ss_pred chHHHHHH-HHHHHHHHHHHHhheehhhhhc
Confidence 34556667 4445556666677777777775
No 82
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=44.69 E-value=7.7 Score=27.21 Aligned_cols=35 Identities=37% Similarity=0.764 Sum_probs=21.2
Q ss_pred CCCCCeeeEeccCCCCCCccccc--ccCCCcccccHHHHH
Q 026324 56 PSKLVECRICHEEDEDSNMEIPC--SCCGSLKYAHRKCVQ 93 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~~L~~PC--~C~GslkyvH~~CL~ 93 (240)
......|-+|.....++..-.-| .|+ +|.|..|+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~---~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQ---KWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTC---CEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccCcc---ccCchhccC
Confidence 34566899998875443333444 354 899999974
No 83
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=43.03 E-value=3.8 Score=33.13 Aligned_cols=52 Identities=19% Similarity=0.422 Sum_probs=33.8
Q ss_pred CCCCCeeeEeccCCC-CCCcccccccCCCcccccHHHHHHHHHH---hCCcccccccccc
Q 026324 56 PSKLVECRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCNE---KGDTTCEICREQY 111 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~-d~~L~~PC~C~GslkyvH~~CL~~W~~~---k~~~~CEiCk~~y 111 (240)
..+...| +|....+ ++.|+.=-.| -.|.|..|+.---.. .+...|+.|...-
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd~C---~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCDRC---QNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECTTT---CCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeECCCC---CchhChhhcCCchhhccCccCeecCCCcchh
Confidence 3466789 9987653 4456542234 489999999643332 4688999998654
No 84
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.05 E-value=1.7 Score=29.36 Aligned_cols=48 Identities=19% Similarity=0.428 Sum_probs=27.1
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHH--hCCcccccccc
Q 026324 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICRE 109 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiCk~ 109 (240)
......|.+|...+ .|+ - |.+--+..|..||.--+.. ++.+.|..|..
T Consensus 6 ~~~~~~C~vC~~~g---~ll-~--Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKSG---QLL-M--CDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCSS---CCE-E--CSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCCC---eEE-E--cCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 34567799998653 332 2 2233467888887633222 35666666643
No 85
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=41.90 E-value=23 Score=25.15 Aligned_cols=53 Identities=21% Similarity=0.365 Sum_probs=34.6
Q ss_pred CCCCeeeEeccCCC-CCCcccccccCCCcccccHHHHHHHHHHh---CCcccccccccccc
Q 026324 57 SKLVECRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCNEK---GDTTCEICREQYNP 113 (240)
Q Consensus 57 ~~~~~CRIC~e~~~-d~~L~~PC~C~GslkyvH~~CL~~W~~~k---~~~~CEiCk~~y~~ 113 (240)
.....| ||....+ +..|+.==.|. .|.|..|+.-=-... ....|+.|.....+
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQ---DWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTC---CEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCC---CcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 455667 8877654 44565422343 799999986433332 57899999877654
No 86
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=41.00 E-value=6.4 Score=27.01 Aligned_cols=48 Identities=17% Similarity=0.484 Sum_probs=32.0
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHH--hCCcccccccc
Q 026324 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICRE 109 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiCk~ 109 (240)
......|.+|...+ .|+. |.+=-+..|..||.--+.+ ++.+.|..|..
T Consensus 8 ~~~~~~C~vC~~~g---~ll~---CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQGG---EIIL---CDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCCS---SEEE---CSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCCC---cEEE---CCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 34567899998643 3332 3344478999998864432 57899999965
No 87
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=39.82 E-value=1.3 Score=30.60 Aligned_cols=49 Identities=24% Similarity=0.598 Sum_probs=29.5
Q ss_pred CCCCCCeeeEeccCCCCCCccc--ccccCCCcccccHHHHHHHHHH--hCCcccccccc
Q 026324 55 SPSKLVECRICHEEDEDSNMEI--PCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICRE 109 (240)
Q Consensus 55 ~~~~~~~CRIC~e~~~d~~L~~--PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiCk~ 109 (240)
.+++...| ||...+. +.|+. -|.|+ ..+.|..|+. +.. ++.+.|+.|..
T Consensus 6 d~~e~~~C-~C~~~~~-g~mi~CD~cdC~--~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 6 DPNEPTYC-LCHQVSY-GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp ---CCEET-TTTEECC-SEEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCCEE-ECCCcCC-CCEEEeCCCCCC--CceEehhcCC--CCcCCCCCEECcCccC
Confidence 34566778 8977653 44542 22243 2689999998 433 36788888854
No 88
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=38.02 E-value=12 Score=28.92 Aligned_cols=49 Identities=18% Similarity=0.431 Sum_probs=34.9
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHHhCCccccccccccccCc
Q 026324 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPGY 115 (240)
Q Consensus 58 ~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~y 115 (240)
..--|+.|+-++. .|+. |+ -+|.=..||..-+..++ .|+||+++.....
T Consensus 27 G~~nCKsCWf~~k--~LV~-C~----dHYLCl~CLtlmL~~Sd--rCpIC~~pLPtkl 75 (99)
T 2ko5_A 27 GPQFCKSCWFENK--GLVE-CN----NHYLCLNCLTLLLSVSN--RCPICKMPLPTKL 75 (99)
T ss_dssp CCCCCCSSCSCCS--SEEE-CS----SCEEEHHHHHHTCSSSS--EETTTTEECCCCS
T ss_pred CcccChhhccccC--Ceee-ec----chhhHHHHHHHHHhhcc--CCcccCCcCCcce
Confidence 3457888877653 4553 32 37899999887776554 8999999987654
No 89
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=36.30 E-value=28 Score=23.47 Aligned_cols=35 Identities=20% Similarity=0.578 Sum_probs=20.5
Q ss_pred CccccccccccccCccCCCCcccccc---ccCCCcccc
Q 026324 101 DTTCEICREQYNPGYTAPPPLFRYGG---NFRANWEIS 135 (240)
Q Consensus 101 ~~~CEiCk~~y~~~yt~p~~~~~~~~---~~~~~w~~~ 135 (240)
...|.+|++.|.+.--.|..-...|. ++..+|..+
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP 40 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACP 40 (52)
T ss_dssp CEECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCS
T ss_pred cEEeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCC
Confidence 46899999999865433322222233 345667654
No 90
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.89 E-value=2.5 Score=31.65 Aligned_cols=51 Identities=24% Similarity=0.382 Sum_probs=31.7
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHH--HhCCccccccccc
Q 026324 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCN--EKGDTTCEICREQ 110 (240)
Q Consensus 57 ~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~--~k~~~~CEiCk~~ 110 (240)
.+...|.||...++++.|+ -| .+=-+..|..||.-=+. -++.+.|+.|...
T Consensus 14 ~~~~~C~vC~~~~~~~~ll-~C--D~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLL-FC--DGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCE-EC--TTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEE-Ec--CCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 4456799998776433333 22 23336899999863222 2467889888654
No 91
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=33.74 E-value=22 Score=28.79 Aligned_cols=47 Identities=26% Similarity=0.429 Sum_probs=33.1
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHH---------HhCCccccccc
Q 026324 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCN---------EKGDTTCEICR 108 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~---------~k~~~~CEiCk 108 (240)
......|++|.+.++ |+ - |.+=-+-.|..||..=+. ..+++.|..|.
T Consensus 60 Dg~~d~C~vC~~GG~---Ll-c--CD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGN---LI-C--CDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp TSCBCSCSSSCCCSS---EE-E--CSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCCCCeecccCCCCc---EE-e--CCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 456789999987753 32 1 222237899999997652 46899999995
No 92
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=33.59 E-value=3.7 Score=30.96 Aligned_cols=51 Identities=25% Similarity=0.457 Sum_probs=31.4
Q ss_pred CCCCCCeeeEeccCCCCCCcc--cccccCCCcccccHHHHHHHHHHhCCccccc-ccc
Q 026324 55 SPSKLVECRICHEEDEDSNME--IPCSCCGSLKYAHRKCVQRWCNEKGDTTCEI-CRE 109 (240)
Q Consensus 55 ~~~~~~~CRIC~e~~~d~~L~--~PC~C~GslkyvH~~CL~~W~~~k~~~~CEi-Ck~ 109 (240)
.+.+...| ||...+. +.|+ --|.|. ..|.|..|+.-=-..++.+.|+. |..
T Consensus 22 ~~~~~~yC-iC~~~~~-g~MI~CD~c~C~--~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 22 NNQEEVYC-FCRNVSY-GPMVACDNPACP--FEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp --CCSCCS-TTTCCCS-SSEECCCSSSCS--CSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCCCcEE-EeCCCCC-CCEEEecCCCCc--cccCcCccCCCCcCCCCCccCChhhcc
Confidence 34567788 9987543 3454 234454 26999999862111246899999 874
No 93
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=32.85 E-value=17 Score=25.64 Aligned_cols=52 Identities=23% Similarity=0.425 Sum_probs=33.7
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHH-------HhCCcccccccccccc
Q 026324 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCN-------EKGDTTCEICREQYNP 113 (240)
Q Consensus 58 ~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~-------~k~~~~CEiCk~~y~~ 113 (240)
....| ||.....+..|+.==.|. .|.|..|+.-=.. ......|+.|.....+
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd~C~---~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCDRCE---EWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECSSSC---CEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CCCEE-ECCCccCCCCEEEeCCCC---CcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 35677 887776544565422343 8999999853222 2367899999876543
No 94
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=32.26 E-value=3.9 Score=28.06 Aligned_cols=52 Identities=21% Similarity=0.326 Sum_probs=33.3
Q ss_pred CCCCCeeeEeccCCC--CCCcccccccCCCcccccHHHHHHHHH-----HhCCccccccccc
Q 026324 56 PSKLVECRICHEEDE--DSNMEIPCSCCGSLKYAHRKCVQRWCN-----EKGDTTCEICREQ 110 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~--d~~L~~PC~C~GslkyvH~~CL~~W~~-----~k~~~~CEiCk~~ 110 (240)
+.+...|.+|...+. ++.|+ - |.+=-+.+|..|+.--+. .++.+.|..|...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll-~--Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMV-I--CDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEE-E--CSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCEE-E--CCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 456678999987642 23443 2 233346889999875332 4578889888654
No 95
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=31.82 E-value=22 Score=24.32 Aligned_cols=36 Identities=22% Similarity=0.465 Sum_probs=20.9
Q ss_pred CccccccccccccCccCCCCcccccc---ccCCCccccc
Q 026324 101 DTTCEICREQYNPGYTAPPPLFRYGG---NFRANWEISG 136 (240)
Q Consensus 101 ~~~CEiCk~~y~~~yt~p~~~~~~~~---~~~~~w~~~~ 136 (240)
...|.+|++.|.+..--|..-...|. ++..+|..+.
T Consensus 3 ~y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~ 41 (54)
T 4rxn_A 3 KYTCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPL 41 (54)
T ss_dssp CEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTT
T ss_pred ceECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcC
Confidence 35899999999875433322222222 3556776653
No 96
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=31.39 E-value=60 Score=23.15 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=22.6
Q ss_pred CccccccccccccCccCCCCcccccc---ccCCCccccc
Q 026324 101 DTTCEICREQYNPGYTAPPPLFRYGG---NFRANWEISG 136 (240)
Q Consensus 101 ~~~CEiCk~~y~~~yt~p~~~~~~~~---~~~~~w~~~~ 136 (240)
...|.+|++.|.+.--.|..-...|. ++..+|..+.
T Consensus 7 ~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~ 45 (70)
T 1dx8_A 7 KYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPA 45 (70)
T ss_dssp CEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTT
T ss_pred eEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCC
Confidence 56899999999865433332222333 4567887664
No 97
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=30.80 E-value=21 Score=27.06 Aligned_cols=34 Identities=18% Similarity=0.484 Sum_probs=21.5
Q ss_pred CCCeeeEeccCCCC------CCcccccccCCCcccccHHHHHH
Q 026324 58 KLVECRICHEEDED------SNMEIPCSCCGSLKYAHRKCVQR 94 (240)
Q Consensus 58 ~~~~CRIC~e~~~d------~~L~~PC~C~GslkyvH~~CL~~ 94 (240)
....|.+|+..++. ++|+ - |.+=-+..|..||.-
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll-~--C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELI-S--CADCGNSGHPSCLKF 43 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCE-E--CTTTCCEECHHHHTC
T ss_pred cCccccccCCchhhCcCCCchhce-E--hhhcCCCCCCchhcC
Confidence 45689999876421 2444 2 333346889999963
No 98
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=30.46 E-value=6.1 Score=37.91 Aligned_cols=54 Identities=19% Similarity=0.286 Sum_probs=34.4
Q ss_pred CCCCeeeEeccCCC-CCCcccccccCCCcccccHHHHHHHHHHh---CCccccccccccccC
Q 026324 57 SKLVECRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCNEK---GDTTCEICREQYNPG 114 (240)
Q Consensus 57 ~~~~~CRIC~e~~~-d~~L~~PC~C~GslkyvH~~CL~~W~~~k---~~~~CEiCk~~y~~~ 114 (240)
.....| ||....+ ++.|+.=-.|. .|.|..|+.-=-... +...|+.|.....+.
T Consensus 35 ~~~~yC-~C~~~~d~~~~MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~ 92 (488)
T 3kv5_D 35 PPPVYC-VCRQPYDVNRFMIECDICK---DWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSS 92 (488)
T ss_dssp CCCEET-TTTEECCTTSCEEEBTTTC---CEEEHHHHTCCGGGGGGEEEBCCHHHHHHHCSC
T ss_pred CCCeEE-eCCCcCCCCCCeEEccCCC---CceeeeecCcCcccccCCCEEECCCCcCCcCcc
Confidence 445566 8877643 45666533454 799999985432222 468999998765543
No 99
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=29.76 E-value=2.5 Score=29.47 Aligned_cols=51 Identities=25% Similarity=0.524 Sum_probs=29.0
Q ss_pred CCCCCCeeeEeccCCCCCCccc--ccccCCCcccccHHHHHHHHHHhCCcccccccc
Q 026324 55 SPSKLVECRICHEEDEDSNMEI--PCSCCGSLKYAHRKCVQRWCNEKGDTTCEICRE 109 (240)
Q Consensus 55 ~~~~~~~CRIC~e~~~d~~L~~--PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~ 109 (240)
.+++...| ||...+. +.|+. -|.|+ ..+.|..|+.-=-..++.+.|+.|..
T Consensus 7 d~~e~~yC-~C~~~~~-g~MI~CD~c~C~--~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 7 DPNEPTYC-LCNQVSY-GEMIGCDNEQCP--IEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp ---CCEET-TTTEECC-SEEEECSCTTCS--SCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCCCCcEE-ECCCCCC-CCeeeeeCCCCC--cccEecccCCcCcCCCCCEECcCccc
Confidence 34566777 8877543 34542 23354 27999999872111236778888754
No 100
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=29.54 E-value=27 Score=25.90 Aligned_cols=36 Identities=17% Similarity=0.351 Sum_probs=22.1
Q ss_pred CccccccccccccCccCCCCcccccc---ccCCCccccc
Q 026324 101 DTTCEICREQYNPGYTAPPPLFRYGG---NFRANWEISG 136 (240)
Q Consensus 101 ~~~CEiCk~~y~~~yt~p~~~~~~~~---~~~~~w~~~~ 136 (240)
...|.+|++.|.+..-.|..-...|. ++..+|..+.
T Consensus 27 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPv 65 (81)
T 2kn9_A 27 LFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPD 65 (81)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTT
T ss_pred eEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCC
Confidence 46899999999875433332233333 4556787654
No 101
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=29.51 E-value=5 Score=33.63 Aligned_cols=49 Identities=22% Similarity=0.399 Sum_probs=33.8
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHH--hCCccccccccccc
Q 026324 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQYN 112 (240)
Q Consensus 58 ~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiCk~~y~ 112 (240)
....|.+|..++ .|+ - |.|--+..|..|+.-.+.. +|.+.|..|...-+
T Consensus 6 ~~~~C~~C~~~g---~ll-~--Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 6 NEDWCAVCQNGG---DLL-C--CEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SCSSBTTTCCCE---EEE-E--CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCC---ceE-E--cCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 445799998654 232 2 4444578999998665543 57899999987654
No 102
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=29.47 E-value=49 Score=23.44 Aligned_cols=53 Identities=30% Similarity=0.552 Sum_probs=33.5
Q ss_pred CCCCCCCeeeEeccCCCCCCcccccc---cCCCcccccHHHHHHHHHHh-------CCcccccccccc
Q 026324 54 SSPSKLVECRICHEEDEDSNMEIPCS---CCGSLKYAHRKCVQRWCNEK-------GDTTCEICREQY 111 (240)
Q Consensus 54 ~~~~~~~~CRIC~e~~~d~~L~~PC~---C~GslkyvH~~CL~~W~~~k-------~~~~CEiCk~~y 111 (240)
..+.....| ||...++++.|+ -|. |. .|.|-.|+.-=-..+ ....|+.|+..-
T Consensus 11 ~~~~~~~~C-iC~~~~~~g~MI-~CD~~~C~---~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 11 FQPEIKVRC-VCGNSLETDSMI-QCEDPRCH---VWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp SSCCCCCCC-SSCCCCCCSCEE-ECSSTTTC---CEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred cCCCCCEEe-ECCCcCCCCCEE-EECCccCC---ccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 344577888 898875555554 333 54 599999975322221 367888887543
No 103
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=27.85 E-value=3 Score=30.86 Aligned_cols=52 Identities=15% Similarity=0.341 Sum_probs=35.7
Q ss_pred CCCeeeEeccCCC--CCCcccccccCCCcccccHHHHHHHHH------HhCCccccccccccc
Q 026324 58 KLVECRICHEEDE--DSNMEIPCSCCGSLKYAHRKCVQRWCN------EKGDTTCEICREQYN 112 (240)
Q Consensus 58 ~~~~CRIC~e~~~--d~~L~~PC~C~GslkyvH~~CL~~W~~------~k~~~~CEiCk~~y~ 112 (240)
....|.+|...+. ++.|+. |.+=-+..|..|+.--+. .++.+.|..|....+
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~---CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVE---CQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEE---CSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEE---CCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 4568999988753 234443 333346889999876553 357899999987665
No 104
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=26.54 E-value=23 Score=17.99 Aligned_cols=12 Identities=17% Similarity=0.739 Sum_probs=9.5
Q ss_pred cccccccccccc
Q 026324 102 TTCEICREQYNP 113 (240)
Q Consensus 102 ~~CEiCk~~y~~ 113 (240)
..|++|+..|..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 369999998864
No 105
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=25.97 E-value=35 Score=23.21 Aligned_cols=35 Identities=20% Similarity=0.437 Sum_probs=20.7
Q ss_pred ccccccccccccCccCCCCcccccc---ccCCCccccc
Q 026324 102 TTCEICREQYNPGYTAPPPLFRYGG---NFRANWEISG 136 (240)
Q Consensus 102 ~~CEiCk~~y~~~yt~p~~~~~~~~---~~~~~w~~~~ 136 (240)
..|.+|++.|.+.---|..-...|. ++..+|..+.
T Consensus 4 y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~ 41 (55)
T 2v3b_B 4 WQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPD 41 (55)
T ss_dssp EEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTT
T ss_pred EEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCC
Confidence 5799999999865433332222333 3556776543
No 106
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.56 E-value=11 Score=26.64 Aligned_cols=52 Identities=23% Similarity=0.396 Sum_probs=31.5
Q ss_pred CCCCCeeeEeccCCCCCCccc--ccccCCCcccccHHHHHHHHHHhCCcccccccccc
Q 026324 56 PSKLVECRICHEEDEDSNMEI--PCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQY 111 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~~L~~--PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y 111 (240)
+++...| ||...+. +.|+. -|.|+ ..|.|..|+.-=-..++.+.|+.|....
T Consensus 3 ~~~~~yC-~C~~~~~-g~MI~CD~cdC~--~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 3 SGSSGYC-ICNQVSY-GEMVGCDNQDCP--IEWFHYGCVGLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CSCCCCS-TTSCCCC-SSEECCSCTTCS--CCCEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred CCCCeEE-EcCCCCC-CCEeEeCCCCCC--ccCCcccccccCcCCCCCEECCCCCccc
Confidence 4456667 4766543 35542 23343 3799999987322224678899997654
No 107
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=24.80 E-value=25 Score=18.03 Aligned_cols=12 Identities=25% Similarity=0.872 Sum_probs=9.7
Q ss_pred cccccccccccc
Q 026324 102 TTCEICREQYNP 113 (240)
Q Consensus 102 ~~CEiCk~~y~~ 113 (240)
..|++|+..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 479999998864
No 108
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=24.19 E-value=32 Score=27.42 Aligned_cols=48 Identities=27% Similarity=0.436 Sum_probs=32.8
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHH------H---HhCCccccccc
Q 026324 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWC------N---EKGDTTCEICR 108 (240)
Q Consensus 55 ~~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~------~---~k~~~~CEiCk 108 (240)
.+.....|++|.+.++ |+ - |.+--+-.|.+||.+=+ + .++.+.|..|.
T Consensus 53 ~Dg~~~~C~vC~dGG~---Ll-c--Cd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~ 109 (129)
T 3ql9_A 53 SDGMDEQCRWCAEGGN---LI-C--CDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICH 109 (129)
T ss_dssp TTSCBSSCTTTCCCSE---EE-E--CSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred CCCCCCcCeecCCCCe---eE-e--cCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence 3556678999987642 22 1 23344789999999752 2 46789999993
No 109
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=24.07 E-value=3.6 Score=28.30 Aligned_cols=48 Identities=25% Similarity=0.539 Sum_probs=28.8
Q ss_pred CCCCCeeeEeccCCCCCCccc--ccccCCCcccccHHHHHHHHHH--hCCcccccccc
Q 026324 56 PSKLVECRICHEEDEDSNMEI--PCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICRE 109 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~~L~~--PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiCk~ 109 (240)
+++...| ||...+. +.|+. -|.|+ ..+.|..|+. +.. ++.+.|+.|..
T Consensus 6 ~~e~~yC-~C~~~~~-g~mi~CD~~~C~--~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 6 SNEPTYC-LCHQVSY-GEMIGCDNPDCP--IEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp --CCEET-TTTEECC-SEEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCcEE-ECCCCCC-CCeeEeeCCCCC--CCCEecccCC--cccCCCCCEECcCccC
Confidence 3456677 8877543 34542 22243 1699999987 333 36788888854
No 110
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=22.84 E-value=39 Score=25.34 Aligned_cols=36 Identities=17% Similarity=0.382 Sum_probs=21.5
Q ss_pred CccccccccccccCccCCCCcccccc---ccCCCccccc
Q 026324 101 DTTCEICREQYNPGYTAPPPLFRYGG---NFRANWEISG 136 (240)
Q Consensus 101 ~~~CEiCk~~y~~~yt~p~~~~~~~~---~~~~~w~~~~ 136 (240)
...|.+|++.|.+..-.|..-...|. ++..+|..+.
T Consensus 35 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPv 73 (87)
T 1s24_A 35 KWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPD 73 (87)
T ss_dssp EEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSS
T ss_pred eEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCC
Confidence 46899999999865433332222233 4556776643
No 111
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=28.39 E-value=18 Score=18.45 Aligned_cols=12 Identities=25% Similarity=0.742 Sum_probs=9.8
Q ss_pred cccccccccccc
Q 026324 102 TTCEICREQYNP 113 (240)
Q Consensus 102 ~~CEiCk~~y~~ 113 (240)
..|+.|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (26)
T 2lvu_A 3 YVCERCGKRFVQ 14 (26)
Confidence 469999998874
No 112
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=22.65 E-value=24 Score=18.11 Aligned_cols=12 Identities=17% Similarity=0.703 Sum_probs=9.7
Q ss_pred cccccccccccc
Q 026324 102 TTCEICREQYNP 113 (240)
Q Consensus 102 ~~CEiCk~~y~~ 113 (240)
..|+.|+..|..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvh_A 4 FSCSLCPQRSRD 15 (27)
T ss_dssp EECSSSSCEESS
T ss_pred ccCCCcChhhCC
Confidence 479999998863
No 113
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=22.55 E-value=35 Score=22.98 Aligned_cols=34 Identities=21% Similarity=0.490 Sum_probs=19.2
Q ss_pred ccccccccccccCccCCCCcccccc---ccCCCcccc
Q 026324 102 TTCEICREQYNPGYTAPPPLFRYGG---NFRANWEIS 135 (240)
Q Consensus 102 ~~CEiCk~~y~~~yt~p~~~~~~~~---~~~~~w~~~ 135 (240)
..|.+|++.|.+..--|..-...|. ++..+|..+
T Consensus 3 ~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP 39 (52)
T 1yk4_A 3 LSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCP 39 (52)
T ss_dssp EEESSSSCEEETTTCBGGGTBCTTCCGGGSCTTCBCT
T ss_pred EEeCCCCeEECCCcCCcccCcCCCCCHhHCCCCCcCC
Confidence 5799999999765322222222222 345667654
No 114
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=22.53 E-value=9.3 Score=31.22 Aligned_cols=49 Identities=22% Similarity=0.478 Sum_probs=33.0
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHH--hCCccccccccccc
Q 026324 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQYN 112 (240)
Q Consensus 58 ~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiCk~~y~ 112 (240)
+...|.+|..+++ | .- |.+--+..|..|+.--+.. +|.+.|..|...=+
T Consensus 3 ~~~~C~~C~~~g~---l-l~--Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNGGE---L-LC--CEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCCSS---C-EE--CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCCCe---e-ee--cCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 3457999986542 3 22 3444478999998655543 57899999986543
No 115
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.19 E-value=27 Score=17.78 Aligned_cols=12 Identities=25% Similarity=0.780 Sum_probs=9.4
Q ss_pred cccccccccccc
Q 026324 102 TTCEICREQYNP 113 (240)
Q Consensus 102 ~~CEiCk~~y~~ 113 (240)
..|++|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2m0f_A 3 LKCRECGKQFTT 14 (29)
T ss_dssp EECTTTSCEESC
T ss_pred ccCCCCCCccCC
Confidence 479999988863
No 116
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=22.15 E-value=15 Score=24.19 Aligned_cols=44 Identities=23% Similarity=0.492 Sum_probs=27.3
Q ss_pred eeeEeccCCC-CCCcccccc--cCCCcccccHHHHHHHHH--HhCCccccccc
Q 026324 61 ECRICHEEDE-DSNMEIPCS--CCGSLKYAHRKCVQRWCN--EKGDTTCEICR 108 (240)
Q Consensus 61 ~CRIC~e~~~-d~~L~~PC~--C~GslkyvH~~CL~~W~~--~k~~~~CEiCk 108 (240)
.|-+|....+ +..|+. |. |. .|.|..|+.-=.. .+....|+.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~-Cd~~C~---~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQ-CDGGCD---EWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEE-CTTTTC---CEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEE-eCCCCC---ccCcccccCCCccccCCCCEECCCCC
Confidence 4667877654 345654 33 54 7999999764332 24677888774
No 117
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=21.84 E-value=25 Score=25.01 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=23.5
Q ss_pred CcccccccCCCcccccHHHHHHHHHHhCCccccccccccccC
Q 026324 73 NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (240)
Q Consensus 73 ~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (240)
.|..| .|+|.+.|.- .++...|+-|+..|+..
T Consensus 10 iL~CP-~ck~~L~~~~---------~~g~LvC~~c~~~YPI~ 41 (67)
T 2jny_A 10 VLACP-KDKGPLRYLE---------SEQLLVNERLNLAYRID 41 (67)
T ss_dssp CCBCT-TTCCBCEEET---------TTTEEEETTTTEEEEEE
T ss_pred HhCCC-CCCCcCeEeC---------CCCEEEcCCCCccccCC
Confidence 46667 7888887642 35778999999999753
No 118
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=21.32 E-value=34 Score=25.50 Aligned_cols=49 Identities=22% Similarity=0.445 Sum_probs=31.2
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHH-HhCCccccccc
Q 026324 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCN-EKGDTTCEICR 108 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~-~k~~~~CEiCk 108 (240)
..+...| ||...++++.|+. |.+=-.+.|..|+.-=.. ..+.+.|+.|+
T Consensus 25 ~~d~vrC-iC~~~~~~~~mi~---Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~ 74 (98)
T 2lv9_A 25 GTDVTRC-ICGFTHDDGYMIC---CDKCSVWQHIDCMGIDRQHIPDTYLCERCQ 74 (98)
T ss_dssp CCCBCCC-TTSCCSCSSCEEE---BTTTCBEEETTTTTCCTTSCCSSBCCTTTS
T ss_pred CCCCEEe-ECCCccCCCcEEE---cCCCCCcCcCcCCCCCccCCCCCEECCCCc
Confidence 3455678 8877666666664 333347999999853111 12468999996
No 119
>1p1p_A AA-conotoxin PIVA; neurotoxin, acetylcholine receptor binding, transcription regulation; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.3
Probab=20.92 E-value=34 Score=20.12 Aligned_cols=15 Identities=33% Similarity=0.662 Sum_probs=11.1
Q ss_pred CcccccccCCCcccc
Q 026324 73 NMEIPCSCCGSLKYA 87 (240)
Q Consensus 73 ~L~~PC~C~Gslkyv 87 (240)
.--.||+|+|.-.|.
T Consensus 9 aachpc~c~~rp~yc 23 (26)
T 1p1p_A 9 AACHPCSCKDRPSYC 23 (26)
T ss_dssp SSCCTTTSTTCCGGG
T ss_pred ccccccccCCCCCcc
Confidence 346899999876654
No 120
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=20.61 E-value=22 Score=24.69 Aligned_cols=48 Identities=31% Similarity=0.633 Sum_probs=28.0
Q ss_pred CCCCCeeeEeccCCCCCCcccccc---cCCCcccccHHHHHHHHHHh------CCccccccc
Q 026324 56 PSKLVECRICHEEDEDSNMEIPCS---CCGSLKYAHRKCVQRWCNEK------GDTTCEICR 108 (240)
Q Consensus 56 ~~~~~~CRIC~e~~~d~~L~~PC~---C~GslkyvH~~CL~~W~~~k------~~~~CEiCk 108 (240)
+++...| ||....+++.|+ -|. |+ .|.|-.|+.-=-... ....|+.|+
T Consensus 7 ~e~~v~C-~C~~~~~~g~mI-~CD~~~C~---~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr 63 (68)
T 2rsd_A 7 PEAKVRC-ICSSTMVNDSMI-QCEDQRCQ---VWQHLNCVLIPDKPGESAEVPPVFYCELCR 63 (68)
T ss_dssp SSCEECC-TTCCCSCCSCEE-ECSCTTTC---EEEETTTSCCCSSTTSCCCCCSSCCCHHHH
T ss_pred CCCCEEe-ECCCCcCCCCEE-EECCCCCC---CeEchhhCCCCcccccccCCCCcEECcCcc
Confidence 4455667 887665555554 353 65 699999963211111 146677775
No 121
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.35 E-value=28 Score=17.82 Aligned_cols=12 Identities=17% Similarity=0.869 Sum_probs=9.7
Q ss_pred cccccccccccc
Q 026324 102 TTCEICREQYNP 113 (240)
Q Consensus 102 ~~CEiCk~~y~~ 113 (240)
..|++|+..|..
T Consensus 4 ~~C~~C~k~f~~ 15 (28)
T 2kvf_A 4 YSCSVCGKRFSL 15 (28)
T ss_dssp EECSSSCCEESC
T ss_pred ccCCCCCcccCC
Confidence 479999998864
No 122
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=20.25 E-value=7.6 Score=27.52 Aligned_cols=46 Identities=17% Similarity=0.376 Sum_probs=25.1
Q ss_pred eeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHH--hC-Ccccccccc
Q 026324 61 ECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KG-DTTCEICRE 109 (240)
Q Consensus 61 ~CRIC~e~~~d~~L~~PC~C~GslkyvH~~CL~~W~~~--k~-~~~CEiCk~ 109 (240)
.|.+|...++.+.|+ -| .+=-+..|..||.-=+.+ +| .+.|..|..
T Consensus 20 ~C~~C~~~~~~~~ll-~C--D~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQL-MC--DECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEE-EC--TTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEE-Ec--CCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 456676554433443 33 333467898887632222 34 667777753
Done!