Query 026325
Match_columns 240
No_of_seqs 360 out of 1730
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 10:52:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026325.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026325hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmt_A Homeobox protein BARH-l 99.8 3.1E-21 1.1E-25 139.9 4.8 63 82-144 14-76 (80)
2 2da3_A Alpha-fetoprotein enhan 99.8 3.7E-21 1.3E-25 139.2 4.0 63 82-144 14-76 (80)
3 2kt0_A Nanog, homeobox protein 99.8 5E-21 1.7E-25 139.9 4.6 64 81-144 18-81 (84)
4 2cue_A Paired box protein PAX6 99.8 1.7E-20 5.7E-25 136.1 6.3 65 82-146 4-68 (80)
5 2h1k_A IPF-1, pancreatic and d 99.8 7.3E-21 2.5E-25 131.8 4.2 61 84-144 2-62 (63)
6 2vi6_A Homeobox protein nanog; 99.8 3.8E-21 1.3E-25 132.8 2.6 61 84-144 2-62 (62)
7 1nk2_P Homeobox protein VND; h 99.8 1.9E-20 6.4E-25 134.8 6.1 65 82-146 6-70 (77)
8 1wh5_A ZF-HD homeobox family p 99.8 7.6E-21 2.6E-25 138.0 3.7 61 82-142 14-78 (80)
9 2dmu_A Homeobox protein goosec 99.8 1.7E-20 5.9E-25 132.5 5.1 63 82-144 4-66 (70)
10 2cra_A Homeobox protein HOX-B1 99.8 8.6E-21 2.9E-25 134.1 3.4 63 82-144 4-66 (70)
11 1puf_A HOX-1.7, homeobox prote 99.8 3.7E-20 1.3E-24 133.2 6.4 64 82-145 10-73 (77)
12 2dmq_A LIM/homeobox protein LH 99.8 3.4E-20 1.2E-24 134.3 5.8 62 83-144 5-66 (80)
13 2dms_A Homeobox protein OTX2; 99.8 2.7E-20 9.2E-25 134.9 5.1 63 82-144 4-66 (80)
14 2da2_A Alpha-fetoprotein enhan 99.8 1.5E-20 5.1E-25 132.8 3.6 63 82-144 4-66 (70)
15 2e1o_A Homeobox protein PRH; D 99.8 3.3E-20 1.1E-24 131.1 5.3 62 83-144 5-66 (70)
16 1fjl_A Paired protein; DNA-bin 99.8 3.7E-20 1.2E-24 134.5 5.2 63 82-144 15-77 (81)
17 1zq3_P PRD-4, homeotic bicoid 99.8 3.5E-20 1.2E-24 130.3 4.6 62 84-145 1-62 (68)
18 2hdd_A Protein (engrailed home 99.8 2.5E-20 8.5E-25 128.2 3.8 58 85-142 3-60 (61)
19 2djn_A Homeobox protein DLX-5; 99.8 1.6E-20 5.6E-25 132.7 2.9 63 82-144 4-66 (70)
20 1yz8_P Pituitary homeobox 2; D 99.8 1.3E-20 4.6E-25 132.4 2.3 63 83-145 1-63 (68)
21 2da1_A Alpha-fetoprotein enhan 99.8 2.2E-20 7.6E-25 131.9 3.3 63 82-144 4-66 (70)
22 1ig7_A Homeotic protein MSX-1; 99.8 4.8E-20 1.6E-24 125.4 4.5 57 86-142 1-57 (58)
23 3a01_A Homeodomain-containing 99.8 4E-20 1.4E-24 137.8 4.4 67 82-148 14-80 (93)
24 1wh7_A ZF-HD homeobox family p 99.8 2E-20 7E-25 135.7 2.7 60 82-142 14-78 (80)
25 2m0c_A Homeobox protein arista 99.8 4.5E-20 1.5E-24 131.8 3.8 64 81-144 5-68 (75)
26 1ahd_P Antennapedia protein mu 99.8 4.2E-20 1.4E-24 129.9 3.5 60 85-144 2-61 (68)
27 1b8i_A Ultrabithorax, protein 99.8 3.8E-20 1.3E-24 134.5 3.3 62 83-144 18-79 (81)
28 1bw5_A ISL-1HD, insulin gene e 99.8 3E-20 1E-24 129.8 2.7 61 84-144 2-62 (66)
29 2da4_A Hypothetical protein DK 99.8 3.7E-20 1.3E-24 134.2 3.2 63 82-144 5-71 (80)
30 1jgg_A Segmentation protein EV 99.8 6.2E-20 2.1E-24 125.8 4.0 58 86-143 2-59 (60)
31 2l7z_A Homeobox protein HOX-A1 99.8 1.1E-19 3.9E-24 129.4 5.3 62 83-144 5-66 (73)
32 2r5y_A Homeotic protein sex co 99.8 4.4E-20 1.5E-24 136.2 3.0 63 82-144 25-87 (88)
33 1ftt_A TTF-1 HD, thyroid trans 99.8 8.9E-20 3.1E-24 128.2 4.4 61 85-145 2-62 (68)
34 1uhs_A HOP, homeodomain only p 99.8 1.4E-19 4.6E-24 128.6 4.7 59 86-144 2-61 (72)
35 3rkq_A Homeobox protein NKX-2. 99.8 1E-19 3.4E-24 123.6 3.9 57 85-141 2-58 (58)
36 2ecc_A Homeobox and leucine zi 99.8 1.2E-19 4.1E-24 130.0 4.5 58 87-144 5-62 (76)
37 1akh_A Protein (mating-type pr 99.8 8.6E-20 2.9E-24 125.4 2.9 59 83-141 3-61 (61)
38 2k40_A Homeobox expressed in E 99.8 7.9E-20 2.7E-24 128.0 2.8 61 85-145 1-61 (67)
39 3nar_A ZHX1, zinc fingers and 99.8 1.7E-19 5.7E-24 135.2 4.6 65 83-147 23-87 (96)
40 2hi3_A Homeodomain-only protei 99.8 2.4E-19 8.1E-24 127.7 5.2 59 86-144 3-62 (73)
41 3a02_A Homeobox protein arista 99.8 1.3E-19 4.4E-24 124.2 3.2 57 88-144 2-58 (60)
42 3a03_A T-cell leukemia homeobo 99.8 2E-19 6.9E-24 121.7 3.9 54 90-143 2-55 (56)
43 1b72_A Protein (homeobox prote 99.8 1.6E-19 5.6E-24 135.5 3.6 63 83-145 32-94 (97)
44 2da5_A Zinc fingers and homeob 99.8 2.6E-19 9E-24 128.2 4.5 59 86-144 8-66 (75)
45 1x2n_A Homeobox protein pknox1 99.8 3.5E-19 1.2E-23 126.7 4.6 63 82-144 4-69 (73)
46 2dn0_A Zinc fingers and homeob 99.8 1.8E-19 6.3E-24 129.3 2.7 60 85-144 8-67 (76)
47 2cuf_A FLJ21616 protein; homeo 99.8 5.4E-19 1.8E-23 132.1 5.3 63 82-144 4-81 (95)
48 2ly9_A Zinc fingers and homeob 99.7 3.6E-19 1.2E-23 126.9 3.6 60 85-144 6-65 (74)
49 1puf_B PRE-B-cell leukemia tra 99.7 4.1E-19 1.4E-23 126.4 3.0 62 85-146 1-65 (73)
50 2ecb_A Zinc fingers and homeob 99.7 4.7E-19 1.6E-23 130.9 3.2 55 90-144 16-70 (89)
51 1b72_B Protein (PBX1); homeodo 99.7 9.1E-19 3.1E-23 128.6 4.2 61 86-146 2-65 (87)
52 1du6_A PBX1, homeobox protein 99.7 4.7E-19 1.6E-23 122.9 1.8 58 85-142 3-63 (64)
53 1k61_A Mating-type protein alp 99.7 1.2E-18 4.2E-23 119.2 3.8 55 88-142 1-58 (60)
54 2dmn_A Homeobox protein TGIF2L 99.7 1.8E-18 6.2E-23 126.2 4.9 62 83-144 5-69 (83)
55 1mnm_C Protein (MAT alpha-2 tr 99.7 1.2E-18 3.9E-23 128.2 3.5 59 83-141 25-86 (87)
56 2dmp_A Zinc fingers and homeob 99.7 2.7E-18 9.2E-23 126.9 4.8 57 88-144 16-72 (89)
57 2da6_A Hepatocyte nuclear fact 99.7 4E-18 1.4E-22 128.4 5.8 62 83-144 4-86 (102)
58 2cqx_A LAG1 longevity assuranc 99.7 4.8E-19 1.6E-23 126.0 0.6 59 85-143 8-67 (72)
59 1le8_B Mating-type protein alp 99.7 2.3E-18 7.8E-23 125.6 3.0 60 86-145 3-65 (83)
60 1au7_A Protein PIT-1, GHF-1; c 99.7 2.2E-18 7.4E-23 138.6 3.0 62 82-143 84-145 (146)
61 1e3o_C Octamer-binding transcr 99.7 2.3E-18 8E-23 140.3 2.8 61 83-143 99-159 (160)
62 1wi3_A DNA-binding protein SAT 99.7 5.9E-18 2E-22 117.5 4.2 58 83-140 5-63 (71)
63 3nau_A Zinc fingers and homeob 99.7 4.9E-18 1.7E-22 117.9 3.7 53 92-144 11-63 (66)
64 3d1n_I POU domain, class 6, tr 99.7 6E-18 2E-22 136.6 4.5 62 81-142 89-150 (151)
65 2l9r_A Homeobox protein NKX-3. 99.7 3E-18 1E-22 120.8 2.0 57 89-145 8-64 (69)
66 2xsd_C POU domain, class 3, tr 99.7 3.6E-18 1.2E-22 139.8 2.5 64 82-145 96-159 (164)
67 1x2m_A LAG1 longevity assuranc 99.7 3E-18 1E-22 118.9 0.6 49 94-142 9-58 (64)
68 1lfb_A Liver transcription fac 99.7 4.3E-18 1.5E-22 128.1 1.5 65 82-146 6-91 (99)
69 2e19_A Transcription factor 8; 99.7 1.2E-17 4.3E-22 116.0 2.8 54 89-142 7-60 (64)
70 3l1p_A POU domain, class 5, tr 99.7 2.2E-17 7.7E-22 133.8 2.8 61 83-143 94-154 (155)
71 3k2a_A Homeobox protein MEIS2; 99.6 4.5E-17 1.6E-21 114.1 2.5 59 90-148 3-64 (67)
72 2d5v_A Hepatocyte nuclear fact 99.6 4E-17 1.4E-21 133.3 2.4 63 82-144 94-156 (164)
73 1ic8_A Hepatocyte nuclear fact 99.5 7.3E-16 2.5E-20 129.0 1.0 61 82-142 112-193 (194)
74 2lk2_A Homeobox protein TGIF1; 99.5 8.7E-15 3E-19 107.6 4.4 55 90-144 10-67 (89)
75 2da7_A Zinc finger homeobox pr 99.5 1.9E-14 6.6E-19 100.4 2.7 46 94-139 14-59 (71)
76 2h8r_A Hepatocyte nuclear fact 99.4 3.7E-14 1.3E-18 120.2 3.2 60 81-140 138-218 (221)
77 1mh3_A Maltose binding-A1 home 99.3 3E-13 1E-17 123.2 1.5 56 86-141 366-421 (421)
78 2nzz_A Penetratin conjugated G 98.9 1.8E-11 6.2E-16 75.2 -2.8 23 127-149 1-23 (37)
79 2ys9_A Homeobox and leucine zi 95.5 0.0034 1.2E-07 43.4 1.0 39 97-135 18-56 (70)
80 2jn6_A Protein CGL2762, transp 88.4 0.074 2.5E-06 38.1 -0.4 44 89-136 3-47 (97)
81 1gu4_A CAAT/enhancer binding p 83.6 2.8 9.6E-05 29.3 5.8 44 137-180 29-76 (78)
82 1hjb_A Ccaat/enhancer binding 82.7 2.5 8.7E-05 30.2 5.4 46 137-182 29-78 (87)
83 1gu4_A CAAT/enhancer binding p 81.2 3.2 0.00011 29.0 5.4 36 141-176 30-65 (78)
84 1hjb_A Ccaat/enhancer binding 79.7 3.7 0.00013 29.3 5.3 35 142-176 31-65 (87)
85 1hlv_A CENP-B, major centromer 78.2 1.7 5.8E-05 32.3 3.4 50 87-139 3-52 (131)
86 2glo_A Brinker CG9653-PA; prot 77.9 1 3.5E-05 29.1 1.8 45 89-134 3-47 (59)
87 1t2k_D Cyclic-AMP-dependent tr 74.7 8.5 0.00029 25.2 5.7 32 145-176 27-58 (61)
88 1ci6_A Transcription factor AT 74.5 8.2 0.00028 25.6 5.6 31 146-176 29-59 (63)
89 2elh_A CG11849-PA, LD40883P; s 71.0 3 0.0001 29.0 2.9 45 85-134 16-60 (87)
90 1gd2_E Transcription factor PA 70.9 7.8 0.00027 26.4 4.9 31 145-175 34-64 (70)
91 3hug_A RNA polymerase sigma fa 69.7 3.4 0.00012 28.8 3.0 47 91-142 37-83 (92)
92 2dgc_A Protein (GCN4); basic d 69.0 13 0.00046 24.6 5.7 32 146-177 29-60 (63)
93 1uii_A Geminin; human, DNA rep 68.6 13 0.00043 26.2 5.6 34 144-177 43-76 (83)
94 2wt7_A Proto-oncogene protein 67.7 15 0.00053 24.1 5.8 23 152-174 28-50 (63)
95 3bni_A Putative TETR-family tr 65.5 0.73 2.5E-05 37.2 -1.5 43 97-140 49-91 (229)
96 1dh3_A Transcription factor CR 65.1 18 0.0006 23.3 5.5 30 147-176 22-51 (55)
97 1jnm_A Proto-oncogene C-JUN; B 65.0 8.9 0.0003 25.2 4.2 25 151-175 26-50 (62)
98 3lph_A Protein REV; helix-loop 64.3 4.9 0.00017 27.5 2.7 38 97-148 18-55 (72)
99 2yy0_A C-MYC-binding protein; 62.5 12 0.00042 24.0 4.3 30 147-176 19-48 (53)
100 1t6f_A Geminin; coiled-coil, c 62.0 16 0.00053 21.6 4.2 31 146-176 6-36 (37)
101 1jko_C HIN recombinase, DNA-in 60.6 2 6.9E-05 25.9 0.3 42 91-137 5-46 (52)
102 1je8_A Nitrate/nitrite respons 60.0 5 0.00017 27.5 2.3 49 89-143 19-67 (82)
103 2wt7_A Proto-oncogene protein 59.0 26 0.00089 23.0 5.6 37 140-176 23-59 (63)
104 1ci6_A Transcription factor AT 58.9 26 0.0009 23.0 5.6 30 146-175 22-51 (63)
105 1iuf_A Centromere ABP1 protein 58.6 8.7 0.0003 29.3 3.7 48 86-136 6-60 (144)
106 1p4w_A RCSB; solution structur 58.5 9.4 0.00032 27.4 3.6 48 89-142 32-79 (99)
107 1s7o_A Hypothetical UPF0122 pr 58.3 16 0.00056 26.7 5.0 47 91-142 22-68 (113)
108 2o8x_A Probable RNA polymerase 57.9 4.7 0.00016 26.1 1.8 46 91-141 15-60 (70)
109 1tc3_C Protein (TC3 transposas 57.4 5.2 0.00018 23.5 1.8 40 91-135 5-44 (51)
110 1t2k_D Cyclic-AMP-dependent tr 57.2 29 0.001 22.5 5.6 31 146-176 21-51 (61)
111 2guh_A Putative TETR-family tr 56.8 0.94 3.2E-05 36.4 -2.3 42 97-139 45-86 (214)
112 1jnm_A Proto-oncogene C-JUN; B 54.9 33 0.0011 22.3 5.6 40 138-177 20-59 (62)
113 1fse_A GERE; helix-turn-helix 54.6 8.8 0.0003 25.0 2.8 48 89-142 9-56 (74)
114 2of7_A Putative TETR-family tr 53.2 1.1 3.6E-05 37.1 -2.7 43 97-140 54-96 (260)
115 3c57_A Two component transcrip 52.6 7.7 0.00026 27.3 2.3 47 90-142 26-72 (95)
116 3s9g_A Protein hexim1; cyclin 52.3 40 0.0014 24.4 6.0 32 144-175 62-93 (104)
117 1x3u_A Transcriptional regulat 51.3 6.5 0.00022 26.1 1.7 46 92-143 17-62 (79)
118 1dip_A Delta-sleep-inducing pe 50.2 48 0.0016 22.7 5.8 30 147-176 15-44 (78)
119 1wlq_A Geminin; coiled-coil; 2 48.9 34 0.0012 24.0 5.0 32 145-176 36-67 (83)
120 2oxj_A Hybrid alpha/beta pepti 48.8 29 0.00099 20.1 3.8 23 155-177 9-31 (34)
121 3m48_A General control protein 47.9 23 0.0008 20.4 3.3 23 155-177 8-30 (33)
122 1ku3_A Sigma factor SIGA; heli 47.5 9.9 0.00034 25.1 2.1 48 91-141 10-59 (73)
123 1xsv_A Hypothetical UPF0122 pr 47.4 21 0.00071 26.0 4.1 47 91-142 25-71 (113)
124 3mzy_A RNA polymerase sigma-H 46.7 13 0.00043 27.7 2.8 45 91-141 109-153 (164)
125 1nkp_A C-MYC, MYC proto-oncoge 46.5 39 0.0013 23.7 5.2 33 142-174 54-86 (88)
126 1p9i_A Cortexillin I/GCN4 hybr 45.1 32 0.0011 19.0 3.4 24 152-175 4-27 (31)
127 2rnj_A Response regulator prot 44.3 6.9 0.00024 27.2 0.9 48 90-143 28-75 (91)
128 2wvr_A Geminin; DNA replicatio 43.7 44 0.0015 27.4 5.6 33 144-176 112-144 (209)
129 3i5g_B Myosin regulatory light 43.5 46 0.0016 24.9 5.7 41 87-127 5-50 (153)
130 2p7v_B Sigma-70, RNA polymeras 43.4 8.8 0.0003 25.0 1.3 50 91-141 5-54 (68)
131 1etf_B REV peptide; complex (R 41.4 17 0.00058 19.9 2.0 13 134-146 7-19 (26)
132 1nlw_A MAD protein, MAX dimeri 41.2 42 0.0014 23.1 4.6 18 157-174 57-74 (80)
133 3v86_A De novo design helix; c 40.9 29 0.001 18.5 2.8 22 152-173 5-26 (27)
134 2iai_A Putative transcriptiona 40.4 11 0.00039 29.9 1.7 41 97-138 36-76 (230)
135 1tty_A Sigma-A, RNA polymerase 39.8 11 0.00038 25.9 1.4 49 91-142 18-68 (87)
136 2wt7_B Transcription factor MA 39.2 82 0.0028 22.4 5.9 30 146-175 54-83 (90)
137 2lv7_A Calcium-binding protein 38.3 21 0.00072 25.2 2.8 46 88-133 26-78 (100)
138 1or7_A Sigma-24, RNA polymeras 37.2 18 0.00061 27.9 2.4 45 92-141 141-185 (194)
139 2rgt_A Fusion of LIM/homeobox 37.2 0.46 1.6E-05 37.6 -7.1 30 83-112 134-163 (169)
140 3iv1_A Tumor susceptibility ge 37.1 1E+02 0.0034 21.3 5.9 33 135-167 13-45 (78)
141 3m9b_A Proteasome-associated A 37.1 29 0.001 29.4 3.8 33 144-176 65-97 (251)
142 1rp3_A RNA polymerase sigma fa 36.7 18 0.00062 28.7 2.4 47 91-142 187-233 (239)
143 1l8d_A DNA double-strand break 36.4 70 0.0024 22.9 5.5 12 197-208 47-58 (112)
144 3q0w_A HTH-type transcriptiona 35.7 4.1 0.00014 32.7 -1.7 43 97-140 50-92 (236)
145 3ulq_B Transcriptional regulat 35.4 21 0.00072 24.9 2.3 47 88-140 26-72 (90)
146 3aqt_A Bacterial regulatory pr 35.1 7.6 0.00026 31.4 -0.2 43 97-140 52-94 (245)
147 1a93_B MAX protein, coiled coi 34.9 51 0.0017 19.2 3.4 19 153-171 13-31 (34)
148 3c3g_A Alpha/beta peptide with 34.9 66 0.0022 18.5 3.8 22 156-177 9-30 (33)
149 2rn7_A IS629 ORFA; helix, all 34.9 24 0.00081 25.0 2.6 46 89-134 4-52 (108)
150 3mq7_A Bone marrow stromal ant 34.8 84 0.0029 23.4 5.5 36 142-177 73-108 (121)
151 2wt7_B Transcription factor MA 34.5 43 0.0015 23.8 3.8 51 123-173 17-74 (90)
152 1nkp_B MAX protein, MYC proto- 33.6 56 0.0019 22.3 4.3 26 146-171 53-78 (83)
153 2l4h_A Calcium and integrin-bi 32.0 6.2 0.00021 31.7 -1.2 19 88-106 41-59 (214)
154 3t72_q RNA polymerase sigma fa 31.9 83 0.0028 22.3 5.1 51 91-142 19-69 (99)
155 3c3f_A Alpha/beta peptide with 31.7 77 0.0026 18.3 3.8 22 156-177 10-31 (34)
156 2dgc_A Protein (GCN4); basic d 30.8 66 0.0022 21.1 4.0 28 144-171 34-61 (63)
157 2jee_A YIIU; FTSZ, septum, coi 30.8 1.1E+02 0.0036 21.4 5.2 12 159-170 53-64 (81)
158 1go4_E MAD1 (mitotic arrest de 30.1 73 0.0025 23.1 4.5 28 148-175 13-40 (100)
159 3gp4_A Transcriptional regulat 29.5 1.1E+02 0.0036 23.1 5.7 16 88-103 37-52 (142)
160 2kvr_A Ubiquitin carboxyl-term 29.5 19 0.00064 27.3 1.3 23 115-137 72-94 (130)
161 2jee_A YIIU; FTSZ, septum, coi 29.3 1.3E+02 0.0045 20.9 5.5 19 147-165 27-45 (81)
162 2x7l_M HIV REV; nuclear export 28.9 55 0.0019 24.3 3.6 36 98-147 16-51 (115)
163 3clo_A Transcriptional regulat 28.8 32 0.0011 28.4 2.7 48 90-143 196-243 (258)
164 3c07_A Putative TETR-family tr 28.6 6.5 0.00022 32.8 -1.7 43 97-140 47-89 (273)
165 3ra3_B P2F; coiled coil domain 28.6 52 0.0018 17.7 2.5 13 161-173 7-19 (28)
166 2k27_A Paired box protein PAX- 28.1 58 0.002 24.5 4.0 41 90-135 24-64 (159)
167 1fi6_A EH domain protein REPS1 27.8 22 0.00076 24.3 1.3 43 91-133 2-49 (92)
168 3he5_B Synzip2; heterodimeric 27.3 1.1E+02 0.0038 18.7 5.0 26 145-170 22-47 (52)
169 3fmy_A HTH-type transcriptiona 26.5 30 0.001 22.6 1.8 42 90-138 9-50 (73)
170 2q0o_A Probable transcriptiona 26.1 33 0.0011 27.8 2.3 48 89-142 173-220 (236)
171 3gpv_A Transcriptional regulat 25.9 1E+02 0.0035 23.4 5.0 15 89-103 52-66 (148)
172 2qko_A Possible transcriptiona 25.4 19 0.00065 27.9 0.7 41 97-138 34-74 (215)
173 2q1z_A RPOE, ECF SIGE; ECF sig 24.9 19 0.00065 27.5 0.6 46 92-142 136-181 (184)
174 1q06_A Transcriptional regulat 24.9 81 0.0028 23.5 4.2 73 89-176 36-108 (135)
175 2pmy_A RAS and EF-hand domain- 24.6 17 0.00059 24.6 0.2 44 90-133 19-67 (91)
176 3vu7_H DNA repair protein REV1 24.6 1E+02 0.0035 23.0 4.6 30 94-123 39-68 (124)
177 1kd8_B GABH BLL, GCN4 acid bas 24.2 91 0.0031 18.2 3.2 20 157-176 11-30 (36)
178 2jpc_A SSRB; DNA binding prote 24.0 14 0.00048 23.1 -0.3 27 116-142 17-43 (61)
179 1u78_A TC3 transposase, transp 23.9 40 0.0014 24.4 2.2 41 90-135 5-45 (141)
180 4dzn_A Coiled-coil peptide CC- 23.7 1E+02 0.0035 17.1 4.1 27 148-174 3-29 (33)
181 2x48_A CAG38821; archeal virus 23.2 27 0.00091 21.3 0.9 36 94-134 18-53 (55)
182 2zxx_A Geminin; coiled-coil, c 22.6 1.4E+02 0.0048 20.6 4.6 25 147-171 34-58 (79)
183 2bni_A General control protein 22.5 95 0.0033 17.9 3.1 20 157-176 11-30 (34)
184 1q08_A Zn(II)-responsive regul 22.1 77 0.0026 21.9 3.4 60 115-175 8-67 (99)
185 2q24_A Putative TETR family tr 22.0 23 0.00078 27.0 0.5 42 96-139 20-61 (194)
186 3o9x_A Uncharacterized HTH-typ 21.9 38 0.0013 24.7 1.7 23 116-138 88-110 (133)
187 3q4f_C DNA repair protein XRCC 21.7 72 0.0024 25.7 3.3 16 158-173 165-180 (186)
188 1l0o_C Sigma factor; bergerat 21.6 20 0.00067 28.5 0.0 43 92-139 199-241 (243)
189 1uo4_A General control protein 21.5 1.2E+02 0.004 17.5 3.3 21 157-177 11-31 (34)
190 2xi8_A Putative transcription 21.4 13 0.00044 23.2 -0.9 23 115-137 17-39 (66)
191 1l3l_A Transcriptional activat 21.4 47 0.0016 26.8 2.3 47 89-141 171-217 (234)
192 3plu_A Ubiquitin-like modifier 21.1 45 0.0015 23.8 1.9 25 115-139 48-72 (93)
193 3bd1_A CRO protein; transcript 20.8 14 0.00049 24.5 -0.9 23 115-137 14-36 (79)
194 2r1j_L Repressor protein C2; p 20.7 14 0.00048 23.2 -0.9 24 115-138 21-44 (68)
195 1wt6_A Myotonin-protein kinase 20.6 2.2E+02 0.0075 19.7 5.5 24 152-175 50-73 (81)
196 1r8e_A Multidrug-efflux transp 20.4 1.4E+02 0.0049 24.4 5.3 34 90-136 43-76 (278)
197 1c07_A Protein (epidermal grow 20.4 30 0.001 23.8 0.8 43 91-133 3-50 (95)
No 1
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.1e-21 Score=139.87 Aligned_cols=63 Identities=29% Similarity=0.383 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 82 DGGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 82 ~~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
..+.+|.|+.|+.+|+.+||..|..++||+..++++||..|||+++||+|||||||+|+|+..
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 456788999999999999999999999999999999999999999999999999999999854
No 2
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=3.7e-21 Score=139.24 Aligned_cols=63 Identities=29% Similarity=0.439 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 82 DGGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 82 ~~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
..+.+|.|+.|+.+|+.+||.+|..++||+..++++||..|||+++||+|||||||+|+|+++
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 456788999999999999999999999999999999999999999999999999999999864
No 3
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=5e-21 Score=139.92 Aligned_cols=64 Identities=33% Similarity=0.462 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 81 VDGGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 81 ~~~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
...+.+|.|+.|+..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+++
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3456788999999999999999999999999999999999999999999999999999999865
No 4
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=1.7e-20 Score=136.05 Aligned_cols=65 Identities=28% Similarity=0.505 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHHhH
Q 026325 82 DGGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQTE 146 (240)
Q Consensus 82 ~~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~~~ 146 (240)
+++.+|+|+.|+.+|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+++..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 4 GSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp CCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 34578899999999999999999999999999999999999999999999999999999987643
No 5
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.81 E-value=7.3e-21 Score=131.80 Aligned_cols=61 Identities=31% Similarity=0.523 Sum_probs=56.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 84 GPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 84 ~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
+.+|.|+.|+..|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 4688999999999999999999999999999999999999999999999999999999864
No 6
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.81 E-value=3.8e-21 Score=132.78 Aligned_cols=61 Identities=31% Similarity=0.467 Sum_probs=53.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 84 GPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 84 ~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
+.+|.|+.|+..|+.+||..|..++||+..++.+||..+||++.+|+|||||||+|+|+++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 5688999999999999999999999999999999999999999999999999999999864
No 7
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.81 E-value=1.9e-20 Score=134.80 Aligned_cols=65 Identities=34% Similarity=0.617 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHHhH
Q 026325 82 DGGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQTE 146 (240)
Q Consensus 82 ~~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~~~ 146 (240)
..+.+|.|+.|+..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+.+.+
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcc
Confidence 44678889999999999999999999999999999999999999999999999999999987643
No 8
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.81 E-value=7.6e-21 Score=138.01 Aligned_cols=61 Identities=11% Similarity=0.229 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHH
Q 026325 82 DGGPPRKKLRLSKEQSRLLEESFRH----NHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKL 142 (240)
Q Consensus 82 ~~~~rr~R~~~t~~Q~~~Le~~F~~----~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kk 142 (240)
..++||+|+.|+.+|+..||.+|+. ++||+..+|++||..|||+++||+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 4567889999999999999999999 999999999999999999999999999999999874
No 9
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.7e-20 Score=132.51 Aligned_cols=63 Identities=30% Similarity=0.506 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 82 DGGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 82 ~~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
+++.+|+|+.|+.+|+.+||.+|..++||+..++++||..|||++.||++||||||+|+|++.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 4 GSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 345788999999999999999999999999999999999999999999999999999999864
No 10
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=8.6e-21 Score=134.13 Aligned_cols=63 Identities=29% Similarity=0.528 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 82 DGGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 82 ~~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
.++.+|+|+.|+..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 345788999999999999999999999999999999999999999999999999999999864
No 11
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.80 E-value=3.7e-20 Score=133.24 Aligned_cols=64 Identities=34% Similarity=0.499 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHHh
Q 026325 82 DGGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQT 145 (240)
Q Consensus 82 ~~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~~ 145 (240)
.++.+++|+.|+..|+.+||..|..++||+..++++||..|||+++||+|||||||+|+|+...
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 3457889999999999999999999999999999999999999999999999999999998764
No 12
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.4e-20 Score=134.25 Aligned_cols=62 Identities=29% Similarity=0.458 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 83 GGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 83 ~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
.+.+|+|+.|+.+|+.+||.+|..++||+..+++.||..|||+++||+|||||||+|+|++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999865
No 13
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=2.7e-20 Score=134.89 Aligned_cols=63 Identities=29% Similarity=0.506 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 82 DGGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 82 ~~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
..+.+|+|+.|+.+|+.+||..|..++||+..++++||..|||++++|+|||||||+|+|+++
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~ 66 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 66 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHH
Confidence 346788999999999999999999999999999999999999999999999999999999865
No 14
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.80 E-value=1.5e-20 Score=132.80 Aligned_cols=63 Identities=27% Similarity=0.438 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 82 DGGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 82 ~~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
.++.+++|+.|+.+|+.+||.+|..++||+..++.+||..|||++.||++||||||+|+|++.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 456788999999999999999999999999999999999999999999999999999999864
No 15
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=3.3e-20 Score=131.10 Aligned_cols=62 Identities=35% Similarity=0.590 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 83 GGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 83 ~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
.+.+++|++|+.+|+.+||.+|..++||+..++.+||..+||+++||++||||||+|+|+..
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 34678899999999999999999999999999999999999999999999999999999864
No 16
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.80 E-value=3.7e-20 Score=134.49 Aligned_cols=63 Identities=32% Similarity=0.489 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 82 DGGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 82 ~~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
..+.+|+|+.|+..|+.+||.+|..++||+..++..||..+||+++||++||||||+|+|++.
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 456788999999999999999999999999999999999999999999999999999999875
No 17
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.79 E-value=3.5e-20 Score=130.32 Aligned_cols=62 Identities=32% Similarity=0.604 Sum_probs=58.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHHh
Q 026325 84 GPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQT 145 (240)
Q Consensus 84 ~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~~ 145 (240)
+++|.|+.|+..|+.+||..|..++||+..++..||..|||++++|+|||||||+|+|++..
T Consensus 1 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 1 GPRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CCSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 36789999999999999999999999999999999999999999999999999999998753
No 18
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.79 E-value=2.5e-20 Score=128.25 Aligned_cols=58 Identities=31% Similarity=0.593 Sum_probs=53.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHH
Q 026325 85 PPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKL 142 (240)
Q Consensus 85 ~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kk 142 (240)
.+|.|+.|+..|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5788999999999999999999999999999999999999999999999999999986
No 19
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.6e-20 Score=132.69 Aligned_cols=63 Identities=29% Similarity=0.434 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 82 DGGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 82 ~~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
+++.+|+|+.|+.+|+.+||.+|..++||+..++++||..+||+++||++||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 446788999999999999999999999999999999999999999999999999999999753
No 20
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.79 E-value=1.3e-20 Score=132.38 Aligned_cols=63 Identities=30% Similarity=0.553 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHHh
Q 026325 83 GGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQT 145 (240)
Q Consensus 83 ~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~~ 145 (240)
|+++|.|+.|+..|+.+||..|..++||+..++..||..+||++.||++||||||+|+|+++.
T Consensus 1 g~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 1 GSQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CCSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 357889999999999999999999999999999999999999999999999999999998753
No 21
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.79 E-value=2.2e-20 Score=131.88 Aligned_cols=63 Identities=22% Similarity=0.416 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 82 DGGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 82 ~~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
..+.+|+|+.|+.+|+.+||.+|..++||+..++.+||..+||++.||++||||||+|+|++.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 345788999999999999999999999999999999999999999999999999999999864
No 22
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.79 E-value=4.8e-20 Score=125.43 Aligned_cols=57 Identities=33% Similarity=0.588 Sum_probs=55.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHH
Q 026325 86 PRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKL 142 (240)
Q Consensus 86 rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kk 142 (240)
+|+|+.|+.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 578999999999999999999999999999999999999999999999999999986
No 23
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.79 E-value=4e-20 Score=137.83 Aligned_cols=67 Identities=27% Similarity=0.436 Sum_probs=61.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHHhHHH
Q 026325 82 DGGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEME 148 (240)
Q Consensus 82 ~~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~~~~~ 148 (240)
..+.+|+|+.|+.+|+.+||..|..++||+..++.+||..+||+++||+|||||||+|+|++..+.+
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHH
Confidence 3457888999999999999999999999999999999999999999999999999999999765443
No 24
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.79 E-value=2e-20 Score=135.72 Aligned_cols=60 Identities=13% Similarity=0.330 Sum_probs=56.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHH
Q 026325 82 DGGPPRKKLRLSKEQSRLLEESFRH-----NHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKL 142 (240)
Q Consensus 82 ~~~~rr~R~~~t~~Q~~~Le~~F~~-----~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kk 142 (240)
..+++|+|+.|+.+|+..|| .|.. ++||+..+|++||..|||+++||+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 45678899999999999999 7999 999999999999999999999999999999999874
No 25
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.78 E-value=4.5e-20 Score=131.80 Aligned_cols=64 Identities=31% Similarity=0.505 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 81 VDGGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 81 ~~~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
..+++++.|+.|+..|+.+||..|..++||+..++.+||..|||++.+|+|||||||+|+|+++
T Consensus 5 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 5 NKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp CCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 3456788999999999999999999999999999999999999999999999999999999865
No 26
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.78 E-value=4.2e-20 Score=129.93 Aligned_cols=60 Identities=33% Similarity=0.557 Sum_probs=57.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 85 PPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 85 ~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
++|.|+.|+..|+..||..|..++||+..++.+||..+||+++||+|||||||+|+|++.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 478899999999999999999999999999999999999999999999999999999865
No 27
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.78 E-value=3.8e-20 Score=134.50 Aligned_cols=62 Identities=35% Similarity=0.569 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 83 GGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 83 ~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
++.+|+|+.|+..|+.+||..|..++||+..++++||..|||++++|+|||||||+|+|++.
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 45788999999999999999999999999999999999999999999999999999999864
No 28
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.78 E-value=3e-20 Score=129.79 Aligned_cols=61 Identities=30% Similarity=0.493 Sum_probs=58.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 84 GPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 84 ~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
+.+|.|+.|+.+|+..||.+|..++||+..++..||..+||++.||++||||||+|+|+++
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 4678999999999999999999999999999999999999999999999999999999864
No 29
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3.7e-20 Score=134.16 Aligned_cols=63 Identities=21% Similarity=0.381 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 82 DGGPPRKKLRLSKEQSRLLEESFRHN----HTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 82 ~~~~rr~R~~~t~~Q~~~Le~~F~~~----~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
.++.+|.|+.|+.+|+.+||.+|..+ +||+..++++||..|||+++||+|||||||+|+|+..
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 45678899999999999999999999 9999999999999999999999999999999999853
No 30
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.78 E-value=6.2e-20 Score=125.82 Aligned_cols=58 Identities=33% Similarity=0.557 Sum_probs=55.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHH
Q 026325 86 PRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLK 143 (240)
Q Consensus 86 rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk 143 (240)
+|.|+.|+.+|+..||..|..++||+..++.+||..+||++.||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999974
No 31
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.78 E-value=1.1e-19 Score=129.42 Aligned_cols=62 Identities=27% Similarity=0.468 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 83 GGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 83 ~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
.+.+|+|+.|+..|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 35788999999999999999999999999999999999999999999999999999999864
No 32
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.78 E-value=4.4e-20 Score=136.16 Aligned_cols=63 Identities=33% Similarity=0.596 Sum_probs=55.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 82 DGGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 82 ~~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
.++.+|+|+.|+..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+++
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 446788999999999999999999999999999999999999999999999999999999864
No 33
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.78 E-value=8.9e-20 Score=128.20 Aligned_cols=61 Identities=31% Similarity=0.583 Sum_probs=58.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHHh
Q 026325 85 PPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQT 145 (240)
Q Consensus 85 ~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~~ 145 (240)
++|.|+.|+..|+.+||..|..++||+..++.+||..+||++++|+|||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 5788999999999999999999999999999999999999999999999999999998653
No 34
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=1.4e-19 Score=128.62 Aligned_cols=59 Identities=22% Similarity=0.386 Sum_probs=56.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 86 PRKKLRLSKEQSRLLEESFRH-NHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 86 rr~R~~~t~~Q~~~Le~~F~~-~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
.++|+.|+.+|+.+||..|.. ++||+..++.+||..+||+++||+|||||||+|+|+++
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 467899999999999999996 99999999999999999999999999999999999864
No 35
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.77 E-value=1e-19 Score=123.57 Aligned_cols=57 Identities=37% Similarity=0.633 Sum_probs=55.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHH
Q 026325 85 PPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSK 141 (240)
Q Consensus 85 ~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~K 141 (240)
+++.|+.|+..|+..||..|..++||+..++.+||..+||++.||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 578899999999999999999999999999999999999999999999999999986
No 36
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=1.2e-19 Score=129.96 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=54.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 87 RKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 87 r~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
.+|.+||.+|+.+||.+|..++||+..+|++||..+||+++||+|||||||+|+|+.+
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 4567799999999999999999999999999999999999999999999999999865
No 37
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.77 E-value=8.6e-20 Score=125.42 Aligned_cols=59 Identities=44% Similarity=0.715 Sum_probs=48.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHH
Q 026325 83 GGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSK 141 (240)
Q Consensus 83 ~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~K 141 (240)
.+.++.|+.|+..|+.+||.+|..++||+..++..||..+||++.||++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 45778899999999999999999999999999999999999999999999999999976
No 38
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.77 E-value=7.9e-20 Score=128.01 Aligned_cols=61 Identities=33% Similarity=0.517 Sum_probs=57.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHHh
Q 026325 85 PPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQT 145 (240)
Q Consensus 85 ~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~~ 145 (240)
.+|+|+.|+.+|+.+||..|..++||+..++..||..+||+++||++||||||+|+|++..
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 3678999999999999999999999999999999999999999999999999999998754
No 39
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.77 E-value=1.7e-19 Score=135.19 Aligned_cols=65 Identities=22% Similarity=0.332 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHHhHH
Q 026325 83 GGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEM 147 (240)
Q Consensus 83 ~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~~~~ 147 (240)
...+|+|++|+..|+.+||..|..++||+..++++||..|||+++||++||||||+|+|+.+.+-
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~ 87 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKW 87 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcccH
Confidence 44678899999999999999999999999999999999999999999999999999999876443
No 40
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=2.4e-19 Score=127.73 Aligned_cols=59 Identities=22% Similarity=0.353 Sum_probs=56.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 86 PRKKLRLSKEQSRLLEESFRH-NHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 86 rr~R~~~t~~Q~~~Le~~F~~-~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
+++|+.|+.+|+.+||..|.. ++||+..++.+||..+||+++||++||||||+|+|+++
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 567899999999999999995 99999999999999999999999999999999999865
No 41
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.77 E-value=1.3e-19 Score=124.25 Aligned_cols=57 Identities=32% Similarity=0.540 Sum_probs=50.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 88 KKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 88 ~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
.|+.|+.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 478999999999999999999999999999999999999999999999999999864
No 42
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.76 E-value=2e-19 Score=121.67 Aligned_cols=54 Identities=31% Similarity=0.519 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHH
Q 026325 90 LRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLK 143 (240)
Q Consensus 90 ~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk 143 (240)
+.|+.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999985
No 43
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=1.6e-19 Score=135.45 Aligned_cols=63 Identities=33% Similarity=0.603 Sum_probs=56.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHHh
Q 026325 83 GGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQT 145 (240)
Q Consensus 83 ~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~~ 145 (240)
+..+++|+.|+..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+++.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 467889999999999999999999999999999999999999999999999999999998764
No 44
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.6e-19 Score=128.21 Aligned_cols=59 Identities=29% Similarity=0.492 Sum_probs=55.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 86 PRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 86 rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
+++|++||.+|+.+||..|..++||+..++.+||..+||+++||+|||||||+|+|+++
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 35677899999999999999999999999999999999999999999999999999865
No 45
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=3.5e-19 Score=126.73 Aligned_cols=63 Identities=22% Similarity=0.274 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 82 DGGPPRKKLRLSKEQSRLLEESFRH---NHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 82 ~~~~rr~R~~~t~~Q~~~Le~~F~~---~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
+++.+++|+.|+..|+.+||.+|.. ++||+..++++||..+||+++||++||||||+|+|+..
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 3457888999999999999999987 99999999999999999999999999999999999864
No 46
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.8e-19 Score=129.28 Aligned_cols=60 Identities=28% Similarity=0.354 Sum_probs=56.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 85 PPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 85 ~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
+.+.|++|+.+|+.+||.+|..++||+..++++||..+||+++||++||||||+|+|+++
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 556789999999999999999999999999999999999999999999999999999864
No 47
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=5.4e-19 Score=132.13 Aligned_cols=63 Identities=24% Similarity=0.379 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC---------------CCCceeeecchhhhhHHHHHH
Q 026325 82 DGGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLK---------------LKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 82 ~~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~---------------L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
..+++|.|+.|+..|+.+||.+|..++||+..++++||..|+ |++.+|++||||||+|+|+++
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 346788999999999999999999999999999999999999 999999999999999999865
No 48
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.75 E-value=3.6e-19 Score=126.94 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=57.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 85 PPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 85 ~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
.++.|+.|+.+|+.+||..|..++||+..++++||..+||+++||++||||||+|+|+++
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 567899999999999999999999999999999999999999999999999999999865
No 49
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.74 E-value=4.1e-19 Score=126.40 Aligned_cols=62 Identities=32% Similarity=0.462 Sum_probs=57.9
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHHhH
Q 026325 85 PPRKKLRLSKEQSRLLEESF---RHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQTE 146 (240)
Q Consensus 85 ~rr~R~~~t~~Q~~~Le~~F---~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~~~ 146 (240)
.+|+|+.|+..|+.+||.+| ..++||+..++..||..+||++.||++||||||+|+|++...
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 36789999999999999999 899999999999999999999999999999999999986543
No 50
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=4.7e-19 Score=130.87 Aligned_cols=55 Identities=29% Similarity=0.535 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 90 LRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 90 ~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
.+|+.+|+.+||..|..++||+..+|++||..|||+++||+|||||||+|||+++
T Consensus 16 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred ccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 3899999999999999999999999999999999999999999999999999865
No 51
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.74 E-value=9.1e-19 Score=128.65 Aligned_cols=61 Identities=33% Similarity=0.468 Sum_probs=56.9
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHHhH
Q 026325 86 PRKKLRLSKEQSRLLEESF---RHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQTE 146 (240)
Q Consensus 86 rr~R~~~t~~Q~~~Le~~F---~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~~~ 146 (240)
||+|+.|+..|+.+||.+| ..++||+..++.+||..+||++.||++||||||+|+|++...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 6789999999999999999 899999999999999999999999999999999999987533
No 52
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=4.7e-19 Score=122.90 Aligned_cols=58 Identities=31% Similarity=0.420 Sum_probs=55.7
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHH
Q 026325 85 PPRKKLRLSKEQSRLLEESF---RHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKL 142 (240)
Q Consensus 85 ~rr~R~~~t~~Q~~~Le~~F---~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kk 142 (240)
.+++|+.|+.+|+.+||.+| ..++||+..++.+||..+||++.||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 57889999999999999999 89999999999999999999999999999999999986
No 53
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.73 E-value=1.2e-18 Score=119.24 Aligned_cols=55 Identities=35% Similarity=0.519 Sum_probs=53.1
Q ss_pred CCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHH
Q 026325 88 KKLRLSKEQSRLLEESFRH---NHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKL 142 (240)
Q Consensus 88 ~R~~~t~~Q~~~Le~~F~~---~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kk 142 (240)
+|++|+.+|+.+||.+|.. ++||+..++.+||..+||++.||++||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 4789999999999999999 999999999999999999999999999999999986
No 54
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-18 Score=126.22 Aligned_cols=62 Identities=21% Similarity=0.300 Sum_probs=57.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 83 GGPPRKKLRLSKEQSRLLEESFRH---NHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 83 ~~~rr~R~~~t~~Q~~~Le~~F~~---~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
.+++++|+.|+.+|+.+|+.+|.. ++||+..+|++||..+||+++||++||||||+|+|+..
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHH
Confidence 457788999999999999999987 59999999999999999999999999999999998754
No 55
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.73 E-value=1.2e-18 Score=128.24 Aligned_cols=59 Identities=34% Similarity=0.517 Sum_probs=56.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHH
Q 026325 83 GGPPRKKLRLSKEQSRLLEESFRH---NHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSK 141 (240)
Q Consensus 83 ~~~rr~R~~~t~~Q~~~Le~~F~~---~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~K 141 (240)
.+++++|++|+.+|+.+||.+|.. ++||+..++..||..+||+++||++||||||+|+|
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 456777999999999999999999 99999999999999999999999999999999987
No 56
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.7e-18 Score=126.93 Aligned_cols=57 Identities=25% Similarity=0.418 Sum_probs=53.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 88 KKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 88 ~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
++..||.+|+.+||..|..++||+..++++||..+||+++||+|||||||+|+|+++
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 444599999999999999999999999999999999999999999999999998764
No 57
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4e-18 Score=128.38 Aligned_cols=62 Identities=19% Similarity=0.452 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHh---------------------CCCCceeeecchhhhhHHH
Q 026325 83 GGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQL---------------------KLKPRQVEVWFQNRRARSK 141 (240)
Q Consensus 83 ~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l---------------------~L~~~qVkvWFqNRR~k~K 141 (240)
++.||.|+.|++.|+.+||..|..++||+..+|++||..| +|++.+|+|||||||+++|
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 4578899999999999999999999999999999999999 7999999999999999999
Q ss_pred HHH
Q 026325 142 LKQ 144 (240)
Q Consensus 142 kk~ 144 (240)
+++
T Consensus 84 r~~ 86 (102)
T 2da6_A 84 FRQ 86 (102)
T ss_dssp HHH
T ss_pred Hhh
Confidence 865
No 58
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=4.8e-19 Score=125.97 Aligned_cols=59 Identities=24% Similarity=0.364 Sum_probs=54.9
Q ss_pred CCCCCCCCCHHHHHHHHHHH-hhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHH
Q 026325 85 PPRKKLRLSKEQSRLLEESF-RHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLK 143 (240)
Q Consensus 85 ~rr~R~~~t~~Q~~~Le~~F-~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk 143 (240)
..++|.+++.+|+.+||..| ..++||+..++.+||..+||+++||+|||||||+|+|+.
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 45667788999999999999 999999999999999999999999999999999999864
No 59
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.71 E-value=2.3e-18 Score=125.62 Aligned_cols=60 Identities=33% Similarity=0.485 Sum_probs=54.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHHh
Q 026325 86 PRKKLRLSKEQSRLLEESFRH---NHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQT 145 (240)
Q Consensus 86 rr~R~~~t~~Q~~~Le~~F~~---~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~~ 145 (240)
+++|++|+.+|+.+||.+|.. ++||+..++.+||..+||++.||++||||||+|+|+...
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 456777999999999999999 999999999999999999999999999999999998653
No 60
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.71 E-value=2.2e-18 Score=138.56 Aligned_cols=62 Identities=26% Similarity=0.425 Sum_probs=55.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHH
Q 026325 82 DGGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLK 143 (240)
Q Consensus 82 ~~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk 143 (240)
.+++||+|+.|+..|+..||..|..++||+..+|.+||..+||+++||+|||||||+|+|++
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 34678889999999999999999999999999999999999999999999999999999975
No 61
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.70 E-value=2.3e-18 Score=140.31 Aligned_cols=61 Identities=26% Similarity=0.432 Sum_probs=54.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHH
Q 026325 83 GGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLK 143 (240)
Q Consensus 83 ~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk 143 (240)
.++||+|+.|+..|+.+||..|..++||+..+|..||..+||+++||+|||||||+|+||+
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4678899999999999999999999999999999999999999999999999999999975
No 62
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=5.9e-18 Score=117.52 Aligned_cols=58 Identities=22% Similarity=0.335 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHhCCCCceeeecchhhhhHH
Q 026325 83 GGPPRKKLRLSKEQSRLLEESFRH-NHTLNPKQKEELATQLKLKPRQVEVWFQNRRARS 140 (240)
Q Consensus 83 ~~~rr~R~~~t~~Q~~~Le~~F~~-~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~ 140 (240)
..++|.|+.|+.+|+.+|+..|+. ++||+.+.|+.||.++||++++|+|||||||--.
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeee
Confidence 458899999999999999999999 9999999999999999999999999999999643
No 63
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.70 E-value=4.9e-18 Score=117.88 Aligned_cols=53 Identities=23% Similarity=0.305 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 92 LSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 92 ~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
-+.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+-+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 36899999999999999999999999999999999999999999999999754
No 64
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.70 E-value=6e-18 Score=136.61 Aligned_cols=62 Identities=23% Similarity=0.362 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHH
Q 026325 81 VDGGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKL 142 (240)
Q Consensus 81 ~~~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kk 142 (240)
..+++||+|+.|+..|+.+||.+|..++||+..++.+||..+||+++||+|||||||+|+||
T Consensus 89 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 89 EPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp SCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 34567889999999999999999999999999999999999999999999999999999986
No 65
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.70 E-value=3e-18 Score=120.83 Aligned_cols=57 Identities=40% Similarity=0.607 Sum_probs=53.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHHh
Q 026325 89 KLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQT 145 (240)
Q Consensus 89 R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~~ 145 (240)
-..++..|+..||..|..++||+..+|.+||..+||+++||+|||||||+|+|+++.
T Consensus 8 ~~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 8 HSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred CCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 356899999999999999999999999999999999999999999999999998753
No 66
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.69 E-value=3.6e-18 Score=139.77 Aligned_cols=64 Identities=27% Similarity=0.390 Sum_probs=52.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHHh
Q 026325 82 DGGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQT 145 (240)
Q Consensus 82 ~~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~~ 145 (240)
.+++||+|+.|+..|+.+||..|..++||+..+|.+||..+||+++||+|||||||+|+|++..
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 4567889999999999999999999999999999999999999999999999999999998764
No 67
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.68 E-value=3e-18 Score=118.86 Aligned_cols=49 Identities=29% Similarity=0.511 Sum_probs=45.9
Q ss_pred HHHHHHHHHHH-hhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHH
Q 026325 94 KEQSRLLEESF-RHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKL 142 (240)
Q Consensus 94 ~~Q~~~Le~~F-~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kk 142 (240)
..|+.+||+.| ..++||+..+|.+||++|||+++||+|||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 45799999999 56899999999999999999999999999999999985
No 68
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.68 E-value=4.3e-18 Score=128.15 Aligned_cols=65 Identities=17% Similarity=0.386 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH------------------hC---CCCceeeecchhhhhHH
Q 026325 82 DGGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQ------------------LK---LKPRQVEVWFQNRRARS 140 (240)
Q Consensus 82 ~~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~------------------l~---L~~~qVkvWFqNRR~k~ 140 (240)
..+.||.|+.|+..|+.+||..|..++||+..+|++||.. || |++.+|+|||||||+++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 3467888999999999999999999999999999999999 88 99999999999999999
Q ss_pred HHHHhH
Q 026325 141 KLKQTE 146 (240)
Q Consensus 141 Kkk~~~ 146 (240)
|+++..
T Consensus 86 k~k~~~ 91 (99)
T 1lfb_A 86 AFRHKL 91 (99)
T ss_dssp SCCC--
T ss_pred HHhchh
Confidence 887643
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.2e-17 Score=115.98 Aligned_cols=54 Identities=19% Similarity=0.232 Sum_probs=50.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHH
Q 026325 89 KLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKL 142 (240)
Q Consensus 89 R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kk 142 (240)
+..++.+|+..||..|..++||+..+|.+||..+||+++||+|||||||+|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 345678999999999999999999999999999999999999999999999875
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.66 E-value=2.2e-17 Score=133.84 Aligned_cols=61 Identities=30% Similarity=0.416 Sum_probs=57.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHH
Q 026325 83 GGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLK 143 (240)
Q Consensus 83 ~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk 143 (240)
+++||+|+.|+..|+..||..|..++||+..++.+||..+||+++||+|||||||+|+|+.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 4678889999999999999999999999999999999999999999999999999999973
No 71
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=4.5e-17 Score=114.11 Aligned_cols=59 Identities=22% Similarity=0.233 Sum_probs=50.7
Q ss_pred CCCCHHHHHHHHHHHh---hcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHHhHHH
Q 026325 90 LRLSKEQSRLLEESFR---HNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEME 148 (240)
Q Consensus 90 ~~~t~~Q~~~Le~~F~---~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~~~~~ 148 (240)
.+|+.+|+.+|+.+|. .++||+..++.+||..+||+++||++||||||+|+|+...++.
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 3799999999999999 9999999999999999999999999999999999998765543
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.64 E-value=4e-17 Score=133.34 Aligned_cols=63 Identities=27% Similarity=0.352 Sum_probs=54.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 82 DGGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 82 ~~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
..+.||+|+.|+..|+.+||.+|..++||+..+|..||..+||+++||+|||||||+|+|+..
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 346788999999999999999999999999999999999999999999999999999999754
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.54 E-value=7.3e-16 Score=129.05 Aligned_cols=61 Identities=16% Similarity=0.385 Sum_probs=53.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC---------------------CCCceeeecchhhhhHH
Q 026325 82 DGGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLK---------------------LKPRQVEVWFQNRRARS 140 (240)
Q Consensus 82 ~~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~---------------------L~~~qVkvWFqNRR~k~ 140 (240)
..+.||.|+.|+..|+.+||..|..++||+..+|++||..++ |++.+|++||||||+++
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 356788999999999999999999999999999999999999 99999999999999998
Q ss_pred HH
Q 026325 141 KL 142 (240)
Q Consensus 141 Kk 142 (240)
|.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 75
No 74
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.51 E-value=8.7e-15 Score=107.55 Aligned_cols=55 Identities=29% Similarity=0.320 Sum_probs=51.3
Q ss_pred CCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHH
Q 026325 90 LRLSKEQSRLLEESFRH---NHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQ 144 (240)
Q Consensus 90 ~~~t~~Q~~~Le~~F~~---~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~ 144 (240)
..|+.+++.+|+.+|.. ++||+..+|.+||.++||++.||++||+|||.|+|+..
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~ 67 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDM 67 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHH
Confidence 35899999999999987 89999999999999999999999999999999998754
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.9e-14 Score=100.44 Aligned_cols=46 Identities=20% Similarity=0.388 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhH
Q 026325 94 KEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRAR 139 (240)
Q Consensus 94 ~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k 139 (240)
++|+..|+.+|..+++|+.+++..||..+||+.++|+|||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999974
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.43 E-value=3.7e-14 Score=120.23 Aligned_cols=60 Identities=17% Similarity=0.394 Sum_probs=53.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC---------------------CCCceeeecchhhhhH
Q 026325 81 VDGGPPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLK---------------------LKPRQVEVWFQNRRAR 139 (240)
Q Consensus 81 ~~~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~---------------------L~~~qVkvWFqNRR~k 139 (240)
...+.||.|+.|++.|+.+||.+|..++||+..+|++||..+| |++.+|++||||||++
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 3456788899999999999999999999999999999999998 8999999999999987
Q ss_pred H
Q 026325 140 S 140 (240)
Q Consensus 140 ~ 140 (240)
.
T Consensus 218 ~ 218 (221)
T 2h8r_A 218 E 218 (221)
T ss_dssp C
T ss_pred h
Confidence 5
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.31 E-value=3e-13 Score=123.22 Aligned_cols=56 Identities=41% Similarity=0.672 Sum_probs=53.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHH
Q 026325 86 PRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSK 141 (240)
Q Consensus 86 rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~K 141 (240)
++.++.|+..|+..||+.|+.++||+..+|++||.++||+++||+|||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 45577899999999999999999999999999999999999999999999999976
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.95 E-value=1.8e-11 Score=75.19 Aligned_cols=23 Identities=39% Similarity=0.673 Sum_probs=19.5
Q ss_pred ceeeecchhhhhHHHHHHhHHHH
Q 026325 127 RQVEVWFQNRRARSKLKQTEMEC 149 (240)
Q Consensus 127 ~qVkvWFqNRR~k~Kkk~~~~~~ 149 (240)
+||+|||||||+|||+++.+...
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~ 23 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDAR 23 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTT
T ss_pred CCceeccHHHHHHHHHHhHHHHH
Confidence 68999999999999998765443
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.54 E-value=0.0034 Score=43.37 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=36.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchh
Q 026325 97 SRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQN 135 (240)
Q Consensus 97 ~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqN 135 (240)
.+.|+.+|...+.+.......|+.+..|+..||+-||--
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 479999999999999999999999999999999999954
No 80
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=88.45 E-value=0.074 Score=38.14 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHhCCCCceeeecchhh
Q 026325 89 KLRLSKEQSRLLEESFRHN-HTLNPKQKEELATQLKLKPRQVEVWFQNR 136 (240)
Q Consensus 89 R~~~t~~Q~~~Le~~F~~~-~~p~~~~r~~LA~~l~L~~~qVkvWFqNR 136 (240)
|..|+.++....-..+... .+ ...++|+.+|++...|..|...-
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHHH
Confidence 4568888876655555332 22 25689999999999999998543
No 81
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=83.57 E-value=2.8 Score=29.31 Aligned_cols=44 Identities=23% Similarity=0.213 Sum_probs=27.1
Q ss_pred hhHHHHHHh----HHHHHHHHHHhhchHHHHHHHHHHHHHHHhccCCC
Q 026325 137 RARSKLKQT----EMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGP 180 (240)
Q Consensus 137 R~k~Kkk~~----~~~~~~l~~~~~~l~~e~~~l~~e~~~l~~~~~~~ 180 (240)
|.+.|+++. +.....|...+..|..+...|..|+..|+.+....
T Consensus 29 rSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q~ 76 (78)
T 1gu4_A 29 KSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 444444443 34445567777777777777777887777765543
No 82
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=82.68 E-value=2.5 Score=30.18 Aligned_cols=46 Identities=24% Similarity=0.258 Sum_probs=29.5
Q ss_pred hhHHHHHHh----HHHHHHHHHHhhchHHHHHHHHHHHHHHHhccCCCCC
Q 026325 137 RARSKLKQT----EMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPT 182 (240)
Q Consensus 137 R~k~Kkk~~----~~~~~~l~~~~~~l~~e~~~l~~e~~~l~~~~~~~~~ 182 (240)
|.+.|+++. +.....|...+..|..+...|..|+..|+.+....|.
T Consensus 29 rSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 29 KSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 444444433 3444567777778888888888888888887665544
No 83
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=81.18 E-value=3.2 Score=28.99 Aligned_cols=36 Identities=28% Similarity=0.279 Sum_probs=28.1
Q ss_pred HHHHhHHHHHHHHHHhhchHHHHHHHHHHHHHHHhc
Q 026325 141 KLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAM 176 (240)
Q Consensus 141 Kkk~~~~~~~~l~~~~~~l~~e~~~l~~e~~~l~~~ 176 (240)
-+.........+......|..||..|+.++..|...
T Consensus 30 SR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E 65 (78)
T 1gu4_A 30 SRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRE 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677778889999999999999988763
No 84
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=79.65 E-value=3.7 Score=29.31 Aligned_cols=35 Identities=29% Similarity=0.286 Sum_probs=24.4
Q ss_pred HHHhHHHHHHHHHHhhchHHHHHHHHHHHHHHHhc
Q 026325 142 LKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAM 176 (240)
Q Consensus 142 kk~~~~~~~~l~~~~~~l~~e~~~l~~e~~~l~~~ 176 (240)
+.........+......|..||..|+.++..|...
T Consensus 31 R~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E 65 (87)
T 1hjb_A 31 RDKAKMRNLETQHKVLELTAENERLQKKVEQLSRE 65 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566667778888888888888877754
No 85
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=78.18 E-value=1.7 Score=32.28 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=38.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhH
Q 026325 87 RKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRAR 139 (240)
Q Consensus 87 r~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k 139 (240)
++|..|+.++...+-..+..+.... ..+||+.+|++...|..|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 3577899999888777775555544 2368999999999999999876653
No 86
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=77.91 E-value=1 Score=29.11 Aligned_cols=45 Identities=18% Similarity=0.326 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecch
Q 026325 89 KLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQ 134 (240)
Q Consensus 89 R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFq 134 (240)
|..|+.+....+...+... ........++|.++|+....|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 4578888877765555433 32112256899999999999999964
No 87
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=74.67 E-value=8.5 Score=25.17 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHhhchHHHHHHHHHHHHHHHhc
Q 026325 145 TEMECEYLKRWFGSLTEQNRRLQREVEELRAM 176 (240)
Q Consensus 145 ~~~~~~~l~~~~~~l~~e~~~l~~e~~~l~~~ 176 (240)
.+.+...|...+..|..+...|+.|+..|+.+
T Consensus 27 Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 27 LEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556666666666666666553
No 88
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=74.51 E-value=8.2 Score=25.58 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHhc
Q 026325 146 EMECEYLKRWFGSLTEQNRRLQREVEELRAM 176 (240)
Q Consensus 146 ~~~~~~l~~~~~~l~~e~~~l~~e~~~l~~~ 176 (240)
+.+...|...+..|..+...|+.|+..|+.+
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666666666666666553
No 89
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=70.98 E-value=3 Score=29.04 Aligned_cols=45 Identities=11% Similarity=0.165 Sum_probs=32.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecch
Q 026325 85 PPRKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQ 134 (240)
Q Consensus 85 ~rr~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFq 134 (240)
.++.+..|+.++....-..+.. .. -..+||+.+|++...|..|..
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~~-g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIHD-GE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHH-TC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHC-CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 3456678999886655555643 22 255889999999999988863
No 90
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=70.89 E-value=7.8 Score=26.45 Aligned_cols=31 Identities=29% Similarity=0.348 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHhhchHHHHHHHHHHHHHHHh
Q 026325 145 TEMECEYLKRWFGSLTEQNRRLQREVEELRA 175 (240)
Q Consensus 145 ~~~~~~~l~~~~~~l~~e~~~l~~e~~~l~~ 175 (240)
.+.....|......+..||..|+.++..|..
T Consensus 34 LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 34 LETQVVTLKELHSSTTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666777777777666654
No 91
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=69.72 E-value=3.4 Score=28.85 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHH
Q 026325 91 RLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKL 142 (240)
Q Consensus 91 ~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kk 142 (240)
.++..+..+|.-.|.... .-.+||..+|++...|+.+...-|.+.|+
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 477788888877554332 35689999999999998877655555443
No 92
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=68.98 E-value=13 Score=24.58 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHhcc
Q 026325 146 EMECEYLKRWFGSLTEQNRRLQREVEELRAMK 177 (240)
Q Consensus 146 ~~~~~~l~~~~~~l~~e~~~l~~e~~~l~~~~ 177 (240)
......|......|..+|..|..++..|+...
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677788999999999999998753
No 93
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=68.59 E-value=13 Score=26.25 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=28.2
Q ss_pred HhHHHHHHHHHHhhchHHHHHHHHHHHHHHHhcc
Q 026325 144 QTEMECEYLKRWFGSLTEQNRRLQREVEELRAMK 177 (240)
Q Consensus 144 ~~~~~~~~l~~~~~~l~~e~~~l~~e~~~l~~~~ 177 (240)
....++..|....+.+.+|+..|+.++++|+.+.
T Consensus 43 eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 43 EALKENEKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467778888888899999999999999998753
No 94
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=67.72 E-value=15 Score=24.12 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=10.7
Q ss_pred HHHHhhchHHHHHHHHHHHHHHH
Q 026325 152 LKRWFGSLTEQNRRLQREVEELR 174 (240)
Q Consensus 152 l~~~~~~l~~e~~~l~~e~~~l~ 174 (240)
|....+.|..+|..|+.++..|+
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~L~ 50 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIANLL 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555444443
No 95
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=65.53 E-value=0.73 Score=37.19 Aligned_cols=43 Identities=12% Similarity=0.052 Sum_probs=31.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHH
Q 026325 97 SRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARS 140 (240)
Q Consensus 97 ~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~ 140 (240)
+....+.|....|-.. ...+||++.|++...|..+|.|+-.-.
T Consensus 49 l~aA~~l~~~~G~~~~-tv~~IA~~AGvs~~t~Y~~F~sKe~Ll 91 (229)
T 3bni_A 49 LDACADLLDEVGYDAL-STRAVALRADVPIGSVYRFFGNKRQMA 91 (229)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHhcChhhc-cHHHHHHHHCCCchhHHHHcCCHHHHH
Confidence 3444455777776432 356789999999999999999975443
No 96
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=65.06 E-value=18 Score=23.28 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHhc
Q 026325 147 MECEYLKRWFGSLTEQNRRLQREVEELRAM 176 (240)
Q Consensus 147 ~~~~~l~~~~~~l~~e~~~l~~e~~~l~~~ 176 (240)
.....|......|..||..|..++..|...
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666778999999999999988864
No 97
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=65.04 E-value=8.9 Score=25.18 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=13.7
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHh
Q 026325 151 YLKRWFGSLTEQNRRLQREVEELRA 175 (240)
Q Consensus 151 ~l~~~~~~l~~e~~~l~~e~~~l~~ 175 (240)
.|....+.|..+|..|..++..|+.
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666666666555554
No 98
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=64.32 E-value=4.9 Score=27.49 Aligned_cols=38 Identities=29% Similarity=0.447 Sum_probs=24.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHHhHHH
Q 026325 97 SRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEME 148 (240)
Q Consensus 97 ~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~~~~~ 148 (240)
+.+++-.|+.|+||..+--.. | =.|||.+|+..+.+..
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-a-------------RRNRRRRWR~RQrQI~ 55 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQRQIH 55 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-H-------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-H-------------HHHHHHHHHHHHHHHH
Confidence 345555688899997543222 2 1599999998775543
No 99
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=62.51 E-value=12 Score=23.98 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHhc
Q 026325 147 MECEYLKRWFGSLTEQNRRLQREVEELRAM 176 (240)
Q Consensus 147 ~~~~~l~~~~~~l~~e~~~l~~e~~~l~~~ 176 (240)
.+++.|+.....|+.++..|.+++++++..
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777653
No 100
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=62.02 E-value=16 Score=21.56 Aligned_cols=31 Identities=26% Similarity=0.257 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHhc
Q 026325 146 EMECEYLKRWFGSLTEQNRRLQREVEELRAM 176 (240)
Q Consensus 146 ~~~~~~l~~~~~~l~~e~~~l~~e~~~l~~~ 176 (240)
.++++.|....+.-.+|..+|+.++.+|..+
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~El 36 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELAEV 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 3456666666777778888888888887653
No 101
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=60.59 E-value=2 Score=25.88 Aligned_cols=42 Identities=10% Similarity=0.223 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhh
Q 026325 91 RLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRR 137 (240)
Q Consensus 91 ~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR 137 (240)
.++.++...+...+... . ...+||+.+|++...|..|+....
T Consensus 5 ~~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHcc
Confidence 35555555555555433 2 256889999999999999986543
No 102
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=59.97 E-value=5 Score=27.52 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHH
Q 026325 89 KLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLK 143 (240)
Q Consensus 89 R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk 143 (240)
-..++..+..+|.-.+. .+ .-.++|..+|++...|+.+..+-+.|.+..
T Consensus 19 ~~~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 19 VNQLTPRERDILKLIAQ--GL----PNKMIARRLDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp GGGSCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred HccCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 34589999999987432 21 356899999999999998877666555543
No 103
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=58.96 E-value=26 Score=22.98 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=29.8
Q ss_pred HHHHHhHHHHHHHHHHhhchHHHHHHHHHHHHHHHhc
Q 026325 140 SKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAM 176 (240)
Q Consensus 140 ~Kkk~~~~~~~~l~~~~~~l~~e~~~l~~e~~~l~~~ 176 (240)
.+....+.+...|...+..|..+...|+.++..|+.+
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556777889999999999999999999988864
No 104
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=58.89 E-value=26 Score=23.04 Aligned_cols=30 Identities=23% Similarity=0.245 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHh
Q 026325 146 EMECEYLKRWFGSLTEQNRRLQREVEELRA 175 (240)
Q Consensus 146 ~~~~~~l~~~~~~l~~e~~~l~~e~~~l~~ 175 (240)
......+......|..+|..|..++..|+.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566778888999999999999988875
No 105
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=58.64 E-value=8.7 Score=29.30 Aligned_cols=48 Identities=13% Similarity=0.279 Sum_probs=37.2
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCHHHHHHHHH----Hh--CCCCceeeecchhh
Q 026325 86 PRKKLRLSKEQSRLLEESF-RHNHTLNPKQKEELAT----QL--KLKPRQVEVWFQNR 136 (240)
Q Consensus 86 rr~R~~~t~~Q~~~Le~~F-~~~~~p~~~~r~~LA~----~l--~L~~~qVkvWFqNR 136 (240)
+++|.++|-+|...|-.++ ..++..+.. +||+ ++ ++....|..|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~---~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQ---DLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 6789999999999999998 667766654 4555 77 67778888888664
No 106
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=58.46 E-value=9.4 Score=27.40 Aligned_cols=48 Identities=17% Similarity=0.108 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHH
Q 026325 89 KLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKL 142 (240)
Q Consensus 89 R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kk 142 (240)
...+++.+..+|.-.+.-. .-.++|..+|+++..|+.+..+-+.|..-
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 4568999999997765322 23689999999999999887765555543
No 107
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=58.33 E-value=16 Score=26.72 Aligned_cols=47 Identities=13% Similarity=0.124 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHH
Q 026325 91 RLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKL 142 (240)
Q Consensus 91 ~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kk 142 (240)
.+++.+..+|.-.|.... .-.++|..+|++...|+.|...-|.+.++
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 478888888887765442 24689999999999999998866666554
No 108
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=57.88 E-value=4.7 Score=26.06 Aligned_cols=46 Identities=11% Similarity=-0.033 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHH
Q 026325 91 RLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSK 141 (240)
Q Consensus 91 ~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~K 141 (240)
.+++.+..+|...|.... .-.++|..+|++...|+.|...-+.+.+
T Consensus 15 ~L~~~~r~il~l~~~~g~-----s~~eIA~~lgis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGL-----SYADAAAVCGCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 477888888887764332 2458999999999999887765544444
No 109
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=57.36 E-value=5.2 Score=23.46 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchh
Q 026325 91 RLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQN 135 (240)
Q Consensus 91 ~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqN 135 (240)
.++.++...+...|... + + ..++|+.+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g-~-s---~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V-S---LHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C-C---HHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C-C---HHHHHHHHCcCHHHHHHHHhh
Confidence 46777765555555433 2 2 557899999999999988753
No 110
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=57.20 E-value=29 Score=22.46 Aligned_cols=31 Identities=29% Similarity=0.276 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHhc
Q 026325 146 EMECEYLKRWFGSLTEQNRRLQREVEELRAM 176 (240)
Q Consensus 146 ~~~~~~l~~~~~~l~~e~~~l~~e~~~l~~~ 176 (240)
......|....+.|..+|..|..++..|+..
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e 51 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNE 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667778889999999999999988763
No 111
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=56.79 E-value=0.94 Score=36.37 Aligned_cols=42 Identities=7% Similarity=0.102 Sum_probs=30.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhH
Q 026325 97 SRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRAR 139 (240)
Q Consensus 97 ~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k 139 (240)
+......|....|-. ....+||+..|++..-|...|.||-.-
T Consensus 45 l~AA~~lf~e~G~~~-~tv~~IA~~AGvs~~tlY~~F~sKe~L 86 (214)
T 2guh_A 45 VDAAGRAFATRPYRE-ITLKDIAEDAGVSAPLIIKYFGSKEQL 86 (214)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTSCHHHHHHHHSSHHHH
T ss_pred HHHHHHHHHHcChhh-cCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 444455677777632 235578999999999999999986433
No 112
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=54.90 E-value=33 Score=22.28 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=29.5
Q ss_pred hHHHHHHhHHHHHHHHHHhhchHHHHHHHHHHHHHHHhcc
Q 026325 138 ARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMK 177 (240)
Q Consensus 138 ~k~Kkk~~~~~~~~l~~~~~~l~~e~~~l~~e~~~l~~~~ 177 (240)
.+.+....+.+...|...+..|..+...|..|+..|+.+.
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445567778899999999999999999999887653
No 113
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=54.60 E-value=8.8 Score=24.96 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHH
Q 026325 89 KLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKL 142 (240)
Q Consensus 89 R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kk 142 (240)
-..+++.+..+|...+. .+ ...++|..+|++...|+.++.+-+.|.+.
T Consensus 9 ~~~L~~~e~~il~~~~~--g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 9 KPLLTKREREVFELLVQ--DK----TTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 34588999999987432 22 34589999999999998887765555543
No 114
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=53.24 E-value=1.1 Score=37.12 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=31.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHH
Q 026325 97 SRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARS 140 (240)
Q Consensus 97 ~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~ 140 (240)
+......|....|-.. ...+||+..|++..-|..+|.|+-.-.
T Consensus 54 l~AA~~lf~e~G~~~~-Ti~~IA~~AGvs~~t~Y~yF~sKe~Ll 96 (260)
T 2of7_A 54 RAATYGLIRQQGYEAT-TVEQIAERAEVSPSTVLRYFPTREDIV 96 (260)
T ss_dssp HHHHHHHHHHHCSTTC-CHHHHHHHHTSCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHhCcccc-cHHHHHHHhCCChHHHHHHcCCHHHHH
Confidence 4445556777776432 356789999999999999999875433
No 115
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=52.62 E-value=7.7 Score=27.31 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHH
Q 026325 90 LRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKL 142 (240)
Q Consensus 90 ~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kk 142 (240)
..++..+..+|.-.+.... ..++|..+|++...|+.+..+-+.|.+.
T Consensus 26 ~~Lt~~e~~vl~l~~~g~s------~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGLT------NKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp -CCCHHHHHHHHHHHTTCC------HHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred hcCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 3589999999988643322 4689999999999998877766555544
No 116
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=52.32 E-value=40 Score=24.43 Aligned_cols=32 Identities=22% Similarity=0.174 Sum_probs=22.2
Q ss_pred HhHHHHHHHHHHhhchHHHHHHHHHHHHHHHh
Q 026325 144 QTEMECEYLKRWFGSLTEQNRRLQREVEELRA 175 (240)
Q Consensus 144 ~~~~~~~~l~~~~~~l~~e~~~l~~e~~~l~~ 175 (240)
.-......|....+.|..||++|.+|.+--+.
T Consensus 62 ~~~~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 62 RLDARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33445555666777788888888888776655
No 117
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=51.34 E-value=6.5 Score=26.12 Aligned_cols=46 Identities=30% Similarity=0.390 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHH
Q 026325 92 LSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLK 143 (240)
Q Consensus 92 ~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk 143 (240)
+++.+..+|.-+|. .+ ...++|..+|++...|+.++.+-+.|.+..
T Consensus 17 L~~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 17 LSERERQVLSAVVA--GL----PNKSIAYDLDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp HCHHHHHHHHHHTT--TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 67778888876432 22 245899999999999988877666655543
No 118
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=50.18 E-value=48 Score=22.74 Aligned_cols=30 Identities=37% Similarity=0.477 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHhc
Q 026325 147 MECEYLKRWFGSLTEQNRRLQREVEELRAM 176 (240)
Q Consensus 147 ~~~~~l~~~~~~l~~e~~~l~~e~~~l~~~ 176 (240)
.+.+.||.....|.+.|.+|..|+.-||..
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455678888888999999999999999985
No 119
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=48.86 E-value=34 Score=24.02 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHhhchHHHHHHHHHHHHHHHhc
Q 026325 145 TEMECEYLKRWFGSLTEQNRRLQREVEELRAM 176 (240)
Q Consensus 145 ~~~~~~~l~~~~~~l~~e~~~l~~e~~~l~~~ 176 (240)
...++..|....+.+.+|...|+.++.+|+.+
T Consensus 36 aL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 36 ALKENEKLHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777777777888887777764
No 120
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=48.83 E-value=29 Score=20.10 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=18.0
Q ss_pred HhhchHHHHHHHHHHHHHHHhcc
Q 026325 155 WFGSLTEQNRRLQREVEELRAMK 177 (240)
Q Consensus 155 ~~~~l~~e~~~l~~e~~~l~~~~ 177 (240)
..+.|..+|..|+.|+..|+.+.
T Consensus 9 kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 9 KVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHH
Confidence 34557788999999999998764
No 121
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=47.88 E-value=23 Score=20.42 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=18.1
Q ss_pred HhhchHHHHHHHHHHHHHHHhcc
Q 026325 155 WFGSLTEQNRRLQREVEELRAMK 177 (240)
Q Consensus 155 ~~~~l~~e~~~l~~e~~~l~~~~ 177 (240)
..+.|..+|..|+.|+..|+.+.
T Consensus 8 kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 8 KVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHh
Confidence 34557788999999999998763
No 122
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=47.45 E-value=9.9 Score=25.08 Aligned_cols=48 Identities=13% Similarity=0.105 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHhCCCCceeeecchhhhhHHH
Q 026325 91 RLSKEQSRLLEESFRHN--HTLNPKQKEELATQLKLKPRQVEVWFQNRRARSK 141 (240)
Q Consensus 91 ~~t~~Q~~~Le~~F~~~--~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~K 141 (240)
.+++.+..+|...|... .-.+ -.++|..+|++...|+.|...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s---~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHT---LEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCC---HHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCCC---HHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 47888999998887521 1122 458999999999999887765555544
No 123
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=47.42 E-value=21 Score=26.02 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHH
Q 026325 91 RLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKL 142 (240)
Q Consensus 91 ~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kk 142 (240)
.+++.+..+|.-.|.... .-.++|..+|++...|+.+...-|.+.|+
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 467778888877654332 24689999999999999888766666554
No 124
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=46.72 E-value=13 Score=27.69 Aligned_cols=45 Identities=22% Similarity=0.238 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHH
Q 026325 91 RLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSK 141 (240)
Q Consensus 91 ~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~K 141 (240)
.+++.+..+|. .|-.. + .-.++|..+|++...|+.+...-|.+.|
T Consensus 109 ~L~~~~r~v~~-~~~~g-~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr 153 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG-Y----SYREIATILSKNLKSIDNTIQRIRKKSE 153 (164)
T ss_dssp HSCHHHHHHHH-HHTTT-C----CHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC-C----CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 46777777777 43322 1 3568999999999999887765444444
No 125
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=46.50 E-value=39 Score=23.71 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=22.0
Q ss_pred HHHhHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 026325 142 LKQTEMECEYLKRWFGSLTEQNRRLQREVEELR 174 (240)
Q Consensus 142 kk~~~~~~~~l~~~~~~l~~e~~~l~~e~~~l~ 174 (240)
.+..+.+...+....+.|..+|+.|+.++++|+
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555555556677888888888888775
No 126
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=45.13 E-value=32 Score=18.95 Aligned_cols=24 Identities=42% Similarity=0.594 Sum_probs=18.8
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHh
Q 026325 152 LKRWFGSLTEQNRRLQREVEELRA 175 (240)
Q Consensus 152 l~~~~~~l~~e~~~l~~e~~~l~~ 175 (240)
|+....+|..||.+|+..+++|-+
T Consensus 4 lnallasleaenkqlkakveella 27 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELLA 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566788999999999988865
No 127
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=44.25 E-value=6.9 Score=27.17 Aligned_cols=48 Identities=13% Similarity=0.166 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHH
Q 026325 90 LRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLK 143 (240)
Q Consensus 90 ~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk 143 (240)
..+++.+..+|.-.|.- + .-.++|..+|++...|+.+..+-+.|.+..
T Consensus 28 ~~Lt~~e~~vl~l~~~g--~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 28 EMLTEREMEILLLIAKG--Y----SNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp GGCCSHHHHHHHHHHTT--C----CTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred hcCCHHHHHHHHHHHcC--C----CHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 35889999998875432 2 134789999999999998887666665543
No 128
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=43.73 E-value=44 Score=27.42 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=23.8
Q ss_pred HhHHHHHHHHHHhhchHHHHHHHHHHHHHHHhc
Q 026325 144 QTEMECEYLKRWFGSLTEQNRRLQREVEELRAM 176 (240)
Q Consensus 144 ~~~~~~~~l~~~~~~l~~e~~~l~~e~~~l~~~ 176 (240)
....++..|....+.+.+|+..|+.++.+|+.+
T Consensus 112 eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeL 144 (209)
T 2wvr_A 112 EALKENEKLHKEIEQKDNEIARLKKENKELAEV 144 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777788877887777777653
No 129
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=43.54 E-value=46 Score=24.93 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=32.6
Q ss_pred CCCCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCCCCc
Q 026325 87 RKKLRLSKEQSRLLEESFRH-----NHTLNPKQKEELATQLKLKPR 127 (240)
Q Consensus 87 r~R~~~t~~Q~~~Le~~F~~-----~~~p~~~~r~~LA~~l~L~~~ 127 (240)
.+|..+|.+|+..|+..|.. +.+.+..+...+.+.+|+.+.
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 34667999999999999964 468999998888888887654
No 130
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=43.42 E-value=8.8 Score=24.97 Aligned_cols=50 Identities=12% Similarity=0.205 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHH
Q 026325 91 RLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSK 141 (240)
Q Consensus 91 ~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~K 141 (240)
.+++.+..+|...|....+-. ..-.++|..+|++...|+.+...-+.|.|
T Consensus 5 ~L~~~er~il~l~~~l~~~~g-~s~~eIA~~lgis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTD-YTLEEVGKQFDVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSC-CCHHHHHHHHTCCHHHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHccCCCCC-CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 478888889888873211100 12457999999999999887765544444
No 131
>1etf_B REV peptide; complex (RNA/peptide), export regulator, mRNA splicing, transcription regulation, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.2.1 PDB: 1etg_B
Probab=41.44 E-value=17 Score=19.91 Aligned_cols=13 Identities=38% Similarity=0.529 Sum_probs=9.8
Q ss_pred hhhhhHHHHHHhH
Q 026325 134 QNRRARSKLKQTE 146 (240)
Q Consensus 134 qNRR~k~Kkk~~~ 146 (240)
.|||.+|+..+.+
T Consensus 7 RnRRRRWR~Rq~q 19 (26)
T 1etf_B 7 RNRRRRWRERQRA 19 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 5889999876644
No 132
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=41.24 E-value=42 Score=23.10 Aligned_cols=18 Identities=33% Similarity=0.379 Sum_probs=8.4
Q ss_pred hchHHHHHHHHHHHHHHH
Q 026325 157 GSLTEQNRRLQREVEELR 174 (240)
Q Consensus 157 ~~l~~e~~~l~~e~~~l~ 174 (240)
..+.++++.|+.++..|+
T Consensus 57 ~~l~~e~~~L~~e~~~L~ 74 (80)
T 1nlw_A 57 RKAVHQIDQLQREQRHLK 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444544444444
No 133
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=40.94 E-value=29 Score=18.51 Aligned_cols=22 Identities=41% Similarity=0.554 Sum_probs=14.7
Q ss_pred HHHHhhchHHHHHHHHHHHHHH
Q 026325 152 LKRWFGSLTEQNRRLQREVEEL 173 (240)
Q Consensus 152 l~~~~~~l~~e~~~l~~e~~~l 173 (240)
|+.+.+.|.-|.+.|+.|+..|
T Consensus 5 lkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHhcc
Confidence 4455566677777777777665
No 134
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=40.42 E-value=11 Score=29.85 Aligned_cols=41 Identities=7% Similarity=0.040 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhh
Q 026325 97 SRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRA 138 (240)
Q Consensus 97 ~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~ 138 (240)
+......|....|-.. ...+||+..|++..-|...|.++-.
T Consensus 36 l~aA~~lf~~~G~~~~-t~~~IA~~Agvs~~t~Y~~F~sKe~ 76 (230)
T 2iai_A 36 LSVAVQVFIERGYDGT-SMEHLSKAAGISKSSIYHHVTGKEE 76 (230)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTSCHHHHTTTCSSHHH
T ss_pred HHHHHHHHHHcCcccc-CHHHHHHHHCCChhHHHHhCCCHHH
Confidence 5566667877776432 3567899999999999999998743
No 135
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=39.76 E-value=11 Score=25.89 Aligned_cols=49 Identities=10% Similarity=0.095 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHH
Q 026325 91 RLSKEQSRLLEESFRHN--HTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKL 142 (240)
Q Consensus 91 ~~t~~Q~~~Le~~F~~~--~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kk 142 (240)
.+++.+..+|...|-.. .-. .-.++|..+|++...|+.|...-+.|.|.
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~---s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPK---TLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC---CHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHccCCCCCC---CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 47888888888887521 112 24588999999999999887655555543
No 136
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=39.22 E-value=82 Score=22.36 Aligned_cols=30 Identities=27% Similarity=0.290 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHh
Q 026325 146 EMECEYLKRWFGSLTEQNRRLQREVEELRA 175 (240)
Q Consensus 146 ~~~~~~l~~~~~~l~~e~~~l~~e~~~l~~ 175 (240)
+.+...|....+.|.+|+.++..|+..++.
T Consensus 54 E~e~~~L~~e~~~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 54 ENEKTQLIQQVEQLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666677777888888877777665
No 137
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=38.29 E-value=21 Score=25.15 Aligned_cols=46 Identities=13% Similarity=0.263 Sum_probs=34.7
Q ss_pred CCCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCC--CCceeeecc
Q 026325 88 KKLRLSKEQSRLLEESFRH-----NHTLNPKQKEELATQLKL--KPRQVEVWF 133 (240)
Q Consensus 88 ~R~~~t~~Q~~~Le~~F~~-----~~~p~~~~r~~LA~~l~L--~~~qVkvWF 133 (240)
....++.+++..|+..|.. +.+.+..+...+.+.+|+ +..+|+.+|
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~ 78 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVII 78 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4456899999999999964 468999999998888875 445555444
No 138
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=37.19 E-value=18 Score=27.88 Aligned_cols=45 Identities=13% Similarity=0.045 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHH
Q 026325 92 LSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSK 141 (240)
Q Consensus 92 ~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~K 141 (240)
+++.+..+|.-.|-... .-.++|..+|+++..|+.+...-|.+.|
T Consensus 141 L~~~~r~vl~l~~~~g~-----s~~EIA~~lgis~~tV~~~l~ra~~~Lr 185 (194)
T 1or7_A 141 LPEDLRMAITLRELDGL-----SYEEIAAIMDCPVGTVRSRIFRAREAID 185 (194)
T ss_dssp SCHHHHHHHHHHHTTCC-----CHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcCC-----CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 66777777766553331 2458999999999999887765555544
No 139
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=37.18 E-value=0.46 Score=37.62 Aligned_cols=30 Identities=7% Similarity=0.016 Sum_probs=21.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCH
Q 026325 83 GGPPRKKLRLSKEQSRLLEESFRHNHTLNP 112 (240)
Q Consensus 83 ~~~rr~R~~~t~~Q~~~Le~~F~~~~~p~~ 112 (240)
.+.+|.|+.|+..|++.|+..|+.++||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 457788999999999999999999998863
No 140
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=37.09 E-value=1e+02 Score=21.34 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=19.7
Q ss_pred hhhhHHHHHHhHHHHHHHHHHhhchHHHHHHHH
Q 026325 135 NRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQ 167 (240)
Q Consensus 135 NRR~k~Kkk~~~~~~~~l~~~~~~l~~e~~~l~ 167 (240)
+||.+.+-.+...+.+.|++..+.|.+-..+|.
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~ 45 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLE 45 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHH
Confidence 466666666667777777666655544444333
No 141
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=37.07 E-value=29 Score=29.40 Aligned_cols=33 Identities=18% Similarity=0.094 Sum_probs=24.0
Q ss_pred HhHHHHHHHHHHhhchHHHHHHHHHHHHHHHhc
Q 026325 144 QTEMECEYLKRWFGSLTEQNRRLQREVEELRAM 176 (240)
Q Consensus 144 ~~~~~~~~l~~~~~~l~~e~~~l~~e~~~l~~~ 176 (240)
.....+++|......+..|..+|+.|++.|+..
T Consensus 65 ~L~arNe~L~~~Lk~ar~El~~LkeElerL~sP 97 (251)
T 3m9b_A 65 SLAARNSKLMETLKEARQQLLALREEVDRLGQP 97 (251)
T ss_dssp HHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 334455566777777888888888888888864
No 142
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=36.67 E-value=18 Score=28.73 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHH
Q 026325 91 RLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKL 142 (240)
Q Consensus 91 ~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kk 142 (240)
.+++.+..+|.-.|.... ...+||..+|++...|+.+...-|.+.|+
T Consensus 187 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEEL-----PAKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCC-----CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 377778788877764332 35689999999999998877655555443
No 143
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=36.41 E-value=70 Score=22.85 Aligned_cols=12 Identities=42% Similarity=0.797 Sum_probs=8.7
Q ss_pred CCCCCCCCCCcc
Q 026325 197 LSMCPRCERVTT 208 (240)
Q Consensus 197 ~~~cp~c~~~~~ 208 (240)
...||-|+...+
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 447999987554
No 144
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=35.72 E-value=4.1 Score=32.68 Aligned_cols=43 Identities=12% Similarity=0.124 Sum_probs=30.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHH
Q 026325 97 SRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARS 140 (240)
Q Consensus 97 ~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~ 140 (240)
+....+.|....|-. ....+||+..|++..-|..+|.||..-.
T Consensus 50 l~aA~~lf~e~G~~~-~t~~~IA~~aGvs~~tlY~~F~sK~~L~ 92 (236)
T 3q0w_A 50 LATAENLLEDRPLAD-ISVDDLAKGAGISRPTFYFYFPSKEAVL 92 (236)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCcHHHHHHHCCCHHHHH
Confidence 344445577776632 2356789999999999999999985433
No 145
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=35.39 E-value=21 Score=24.88 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=33.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHH
Q 026325 88 KKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARS 140 (240)
Q Consensus 88 ~R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~ 140 (240)
....|+..+..+|.-.++-. ...++|..||++++.|+....+-+.|.
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~G~------s~~eIA~~L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEKGF------TNQEIADALHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp ---CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 44569999999998776322 256899999999999887665544443
No 146
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=35.11 E-value=7.6 Score=31.38 Aligned_cols=43 Identities=9% Similarity=0.029 Sum_probs=31.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHH
Q 026325 97 SRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARS 140 (240)
Q Consensus 97 ~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~ 140 (240)
+....+.|....|-. ....+||+..|++..-|..+|.|+-.-.
T Consensus 52 l~aA~~lf~~~G~~~-~t~~~IA~~aGvs~~t~Y~~F~sKe~Ll 94 (245)
T 3aqt_A 52 ITSARTLMAERGVDN-VGIAEITEGANIGTGTFYNYFPDREQLL 94 (245)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHTTSCGGGGGGTCSSHHHHH
T ss_pred HHHHHHHHHhcCccc-CcHHHHHHHhCCChHHHHHHcCCHHHHH
Confidence 444555677776633 2356889999999999999999985443
No 147
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=34.91 E-value=51 Score=19.17 Aligned_cols=19 Identities=26% Similarity=0.358 Sum_probs=10.5
Q ss_pred HHHhhchHHHHHHHHHHHH
Q 026325 153 KRWFGSLTEQNRRLQREVE 171 (240)
Q Consensus 153 ~~~~~~l~~e~~~l~~e~~ 171 (240)
.+..+.|+.+|..|..++.
T Consensus 13 qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 13 QQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 3444455566666666654
No 148
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=34.90 E-value=66 Score=18.47 Aligned_cols=22 Identities=0% Similarity=0.164 Sum_probs=16.8
Q ss_pred hhchHHHHHHHHHHHHHHHhcc
Q 026325 156 FGSLTEQNRRLQREVEELRAMK 177 (240)
Q Consensus 156 ~~~l~~e~~~l~~e~~~l~~~~ 177 (240)
.+.|..+|..|+.|+..|+.+.
T Consensus 9 vEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 9 LXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 3456778888999998888753
No 149
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=34.86 E-value=24 Score=24.96 Aligned_cols=46 Identities=15% Similarity=0.223 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHHHHhhc--CCCCH-HHHHHHHHHhCCCCceeeecch
Q 026325 89 KLRLSKEQSRLLEESFRHN--HTLNP-KQKEELATQLKLKPRQVEVWFQ 134 (240)
Q Consensus 89 R~~~t~~Q~~~Le~~F~~~--~~p~~-~~r~~LA~~l~L~~~qVkvWFq 134 (240)
+..|+.++....-..+... .+.+. ....++|..+|++...|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 4578888876554444322 12221 3467899999999999999964
No 150
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=34.78 E-value=84 Score=23.44 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=26.1
Q ss_pred HHHhHHHHHHHHHHhhchHHHHHHHHHHHHHHHhcc
Q 026325 142 LKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMK 177 (240)
Q Consensus 142 kk~~~~~~~~l~~~~~~l~~e~~~l~~e~~~l~~~~ 177 (240)
-+..+.++..|++......+|.++|+++++.+....
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 344567777788888888888888888887666543
No 151
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=34.51 E-value=43 Score=23.83 Aligned_cols=51 Identities=22% Similarity=0.152 Sum_probs=24.5
Q ss_pred CCCCceeeecchhhhhHHH-------HHHhHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 026325 123 KLKPRQVEVWFQNRRARSK-------LKQTEMECEYLKRWFGSLTEQNRRLQREVEEL 173 (240)
Q Consensus 123 ~L~~~qVkvWFqNRR~k~K-------kk~~~~~~~~l~~~~~~l~~e~~~l~~e~~~l 173 (240)
||+..+|..|=|-||.-.- ++++..+...|......|..+.+.|..|+..+
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~ 74 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRL 74 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666665555443211 12222333444444455555555555555544
No 152
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=33.61 E-value=56 Score=22.33 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHH
Q 026325 146 EMECEYLKRWFGSLTEQNRRLQREVE 171 (240)
Q Consensus 146 ~~~~~~l~~~~~~l~~e~~~l~~e~~ 171 (240)
+.+...+....+.|..++..|+.++.
T Consensus 53 ~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 53 RRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444455555544443
No 153
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A
Probab=32.01 E-value=6.2 Score=31.70 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=16.3
Q ss_pred CCCCCCHHHHHHHHHHHhh
Q 026325 88 KKLRLSKEQSRLLEESFRH 106 (240)
Q Consensus 88 ~R~~~t~~Q~~~Le~~F~~ 106 (240)
..+.|+..++..|.+.|..
T Consensus 41 ~~t~~s~~ei~~l~~~F~~ 59 (214)
T 2l4h_A 41 DLTFLTKQEILLAHRRFCE 59 (214)
T ss_dssp SCCSCCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHH
Confidence 4578999999999999976
No 154
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=31.93 E-value=83 Score=22.31 Aligned_cols=51 Identities=12% Similarity=0.181 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHH
Q 026325 91 RLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKL 142 (240)
Q Consensus 91 ~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kk 142 (240)
.+++.+..++.-.|-...+ ....-.++|..+|++...|+.+...-+.+.|.
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~ 69 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 69 (99)
T ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 3677788888777743211 01135688999999999998766544444443
No 155
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=31.74 E-value=77 Score=18.28 Aligned_cols=22 Identities=5% Similarity=0.122 Sum_probs=16.8
Q ss_pred hhchHHHHHHHHHHHHHHHhcc
Q 026325 156 FGSLTEQNRRLQREVEELRAMK 177 (240)
Q Consensus 156 ~~~l~~e~~~l~~e~~~l~~~~ 177 (240)
.+.|..+|..|+.|+..|+.+.
T Consensus 10 VEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 10 LEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHH
Confidence 3456778888999998888753
No 156
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=30.78 E-value=66 Score=21.09 Aligned_cols=28 Identities=29% Similarity=0.138 Sum_probs=17.9
Q ss_pred HhHHHHHHHHHHhhchHHHHHHHHHHHH
Q 026325 144 QTEMECEYLKRWFGSLTEQNRRLQREVE 171 (240)
Q Consensus 144 ~~~~~~~~l~~~~~~l~~e~~~l~~e~~ 171 (240)
..+.+...|...+..|..+...|+.++.
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3355556677777777777777777654
No 157
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=30.77 E-value=1.1e+02 Score=21.38 Aligned_cols=12 Identities=25% Similarity=0.468 Sum_probs=5.5
Q ss_pred hHHHHHHHHHHH
Q 026325 159 LTEQNRRLQREV 170 (240)
Q Consensus 159 l~~e~~~l~~e~ 170 (240)
|..||.+|+.|.
T Consensus 53 L~~en~qLk~E~ 64 (81)
T 2jee_A 53 LERENNHLKEQQ 64 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 158
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=30.12 E-value=73 Score=23.09 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=16.1
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHh
Q 026325 148 ECEYLKRWFGSLTEQNRRLQREVEELRA 175 (240)
Q Consensus 148 ~~~~l~~~~~~l~~e~~~l~~e~~~l~~ 175 (240)
++..++...+.|..|+.+|.+++..|..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666666666666655543
No 159
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=29.52 E-value=1.1e+02 Score=23.13 Aligned_cols=16 Identities=13% Similarity=0.079 Sum_probs=12.3
Q ss_pred CCCCCCHHHHHHHHHH
Q 026325 88 KKLRLSKEQSRLLEES 103 (240)
Q Consensus 88 ~R~~~t~~Q~~~Le~~ 103 (240)
....|+.+++..|...
T Consensus 37 g~R~Y~~~dl~~l~~I 52 (142)
T 3gp4_A 37 GVRKFGAEDLRWILFT 52 (142)
T ss_dssp SCBCBCHHHHHHHHHH
T ss_pred CCeeeCHHHHHHHHHH
Confidence 3567999999988664
No 160
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=29.51 E-value=19 Score=27.32 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=19.1
Q ss_pred HHHHHHHhCCCCceeeecchhhh
Q 026325 115 KEELATQLKLKPRQVEVWFQNRR 137 (240)
Q Consensus 115 r~~LA~~l~L~~~qVkvWFqNRR 137 (240)
...+|+.+|+...+++.|+-..|
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHhCCCcccEEEEEeecC
Confidence 46789999999999999985433
No 161
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=29.33 E-value=1.3e+02 Score=20.86 Aligned_cols=19 Identities=37% Similarity=0.349 Sum_probs=8.0
Q ss_pred HHHHHHHHHhhchHHHHHH
Q 026325 147 MECEYLKRWFGSLTEQNRR 165 (240)
Q Consensus 147 ~~~~~l~~~~~~l~~e~~~ 165 (240)
.+.+.||..+..|.++++.
T Consensus 27 mEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 27 MEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 162
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=28.88 E-value=55 Score=24.27 Aligned_cols=36 Identities=31% Similarity=0.477 Sum_probs=23.2
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHHhHH
Q 026325 98 RLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEM 147 (240)
Q Consensus 98 ~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~~~~ 147 (240)
.+++-.|+.|+||..+--.. | -.|||.+||.++.+.
T Consensus 16 RiIkiLyQSNPyP~peGTRq-a-------------RRNRRRRWR~RQrQI 51 (115)
T 2x7l_M 16 RLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQRQI 51 (115)
T ss_dssp HHHHHHHHSSCCCCCCCCTT-T-------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCCchh-h-------------hHhHHHHHHHHHHHH
Confidence 44455688899997542111 1 169999999876543
No 163
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=28.77 E-value=32 Score=28.44 Aligned_cols=48 Identities=19% Similarity=0.126 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHH
Q 026325 90 LRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLK 143 (240)
Q Consensus 90 ~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk 143 (240)
..+++.+..+|.-.|+.- .-.++|..||+++..|++...+-|.|.|..
T Consensus 196 ~~L~~~erevl~L~~~G~------s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~ 243 (258)
T 3clo_A 196 NILSEREKEILRCIRKGL------SSKEIAATLYISVNTVNRHRQNILEKLSVG 243 (258)
T ss_dssp TSSCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred ccCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 468999999988864222 256899999999999998887666666544
No 164
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=28.57 E-value=6.5 Score=32.75 Aligned_cols=43 Identities=7% Similarity=0.031 Sum_probs=31.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHH
Q 026325 97 SRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARS 140 (240)
Q Consensus 97 ~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~ 140 (240)
+....+.|....|-.. ...+||+..|++..-|..+|.||-.-.
T Consensus 47 l~AA~~lf~e~G~~~~-S~~~IA~~AGVs~~tlY~hF~sKe~Ll 89 (273)
T 3c07_A 47 LETAMRLFQERGYDRT-TMRAIAQEAGVSVGNAYYYFAGKEHLI 89 (273)
T ss_dssp HHHHHHHHHHTCSTTC-CHHHHHHHHTSCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHhCCcccc-CHHHHHHHHCCCHHHHHHHcCCHHHHH
Confidence 4455556877776432 356789999999999999999975443
No 165
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=28.57 E-value=52 Score=17.68 Aligned_cols=13 Identities=38% Similarity=0.739 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 026325 161 EQNRRLQREVEEL 173 (240)
Q Consensus 161 ~e~~~l~~e~~~l 173 (240)
+.|.+|++|+..|
T Consensus 7 qknarlkqeiaal 19 (28)
T 3ra3_B 7 QKNARLKQEIAAL 19 (28)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHH
Confidence 3444555555444
No 166
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=28.07 E-value=58 Score=24.50 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchh
Q 026325 90 LRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQN 135 (240)
Q Consensus 90 ~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqN 135 (240)
..++.++...+...+... + -..++|+.+|++...|..|++.
T Consensus 24 ~~~s~e~r~~ii~l~~~G-~----s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG-V----RPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHH
Confidence 468888777776666543 2 2457899999999999999864
No 167
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=27.80 E-value=22 Score=24.29 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCCCCceeeecc
Q 026325 91 RLSKEQSRLLEESFRH-----NHTLNPKQKEELATQLKLKPRQVEVWF 133 (240)
Q Consensus 91 ~~t~~Q~~~Le~~F~~-----~~~p~~~~r~~LA~~l~L~~~qVkvWF 133 (240)
.++.++...++..|.. +.+.+..+...+...+|++...|+.+|
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~ 49 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIW 49 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 4688899999999964 356788888887777887665544433
No 168
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=27.26 E-value=1.1e+02 Score=18.65 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHhhchHHHHHHHHHHH
Q 026325 145 TEMECEYLKRWFGSLTEQNRRLQREV 170 (240)
Q Consensus 145 ~~~~~~~l~~~~~~l~~e~~~l~~e~ 170 (240)
.+.+.+.|......|..|..+|..|+
T Consensus 22 lerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 22 LERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666666654
No 169
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=26.48 E-value=30 Score=22.60 Aligned_cols=42 Identities=5% Similarity=-0.031 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhh
Q 026325 90 LRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRA 138 (240)
Q Consensus 90 ~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~ 138 (240)
..++.+.+..+...... + ..+||+.+|++...|..|-.+++.
T Consensus 9 ~~~~g~~lr~~R~~~gl----t---q~elA~~~gvs~~tis~~E~G~~~ 50 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSL----T---QKEASEIFGGGVNAFSRYEKGNAX 50 (73)
T ss_dssp CCCCHHHHHHHHHHTTC----C---HHHHHHHHCSCTTHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHcCC----C---HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 46888888888765432 2 468999999999999999887653
No 170
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=26.13 E-value=33 Score=27.79 Aligned_cols=48 Identities=19% Similarity=0.156 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHH
Q 026325 89 KLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKL 142 (240)
Q Consensus 89 R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kk 142 (240)
...+++.+.++|.-.++-. .-.++|..||++++.|+.+..|-+.|..-
T Consensus 173 ~~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKGK------TASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp GGSCCHHHHHHHHHHHTTC------CHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 4568999998886654222 24688999999999999888766666543
No 171
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=25.95 E-value=1e+02 Score=23.37 Aligned_cols=15 Identities=20% Similarity=0.175 Sum_probs=10.8
Q ss_pred CCCCCHHHHHHHHHH
Q 026325 89 KLRLSKEQSRLLEES 103 (240)
Q Consensus 89 R~~~t~~Q~~~Le~~ 103 (240)
.+.|+.+++..|...
T Consensus 52 ~R~Y~~~dl~~l~~I 66 (148)
T 3gpv_A 52 DRIFNEEALKYLEMI 66 (148)
T ss_dssp CEEBCHHHHHHHHHH
T ss_pred CeecCHHHHHHHHHH
Confidence 456888888888644
No 172
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=25.35 E-value=19 Score=27.93 Aligned_cols=41 Identities=7% Similarity=0.071 Sum_probs=30.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhh
Q 026325 97 SRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRA 138 (240)
Q Consensus 97 ~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~ 138 (240)
+....+.|.+..|-. -...+||+..|++..-|..+|.|+..
T Consensus 34 l~aa~~lf~~~G~~~-~tv~~IA~~agvs~~t~Y~~F~sK~~ 74 (215)
T 2qko_A 34 VNAAIEVLAREGARG-LTFRAVDVEANVPKGTASNYFPSRDD 74 (215)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHSSSTTTCHHHHCSCHHH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHcCCCcchHHHhCCCHHH
Confidence 444555687777643 33568899999999999999998743
No 173
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=24.95 E-value=19 Score=27.50 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHH
Q 026325 92 LSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKL 142 (240)
Q Consensus 92 ~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kk 142 (240)
+++.+..+|.-.|-... .-.++|..+|+++..|+.+...-|.+.|+
T Consensus 136 L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 136 LPEAQRALIERAFFGDL-----THRELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp SCHHHHHHHHHHHHSCC-----SSCCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 56666666655443321 12367888889998888877655555543
No 174
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=24.90 E-value=81 Score=23.50 Aligned_cols=73 Identities=10% Similarity=-0.002 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHHHHHhHHHHHHHHHHhhchHHHHHHHHH
Q 026325 89 KLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQR 168 (240)
Q Consensus 89 R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~~~~~~~~l~~~~~~l~~e~~~l~~ 168 (240)
.+.|+.+++..|... ...+.+|++...|+.++........ ....-...+......+.++..+|+.
T Consensus 36 ~R~Y~~~dl~~l~~I-------------~~lr~~G~sl~eI~~~l~~~~~~~~--~~~~~~~~l~~~~~~l~~~i~~L~~ 100 (135)
T 1q06_A 36 YRTYTQQHLNELTLL-------------RQARQVGFNLEESGELVNLFNDPQR--HSADVKRRTLEKVAEIERHIEELQS 100 (135)
T ss_dssp CEECCHHHHHHHHHH-------------HHHHHTTCCHHHHHHHHHHHHCTTC--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeeCHHHHHHHHHH-------------HHHHHCCCCHHHHHHHHHhhhcCCc--hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446999998888643 1234555555555555543221100 0011122333444445555555555
Q ss_pred HHHHHHhc
Q 026325 169 EVEELRAM 176 (240)
Q Consensus 169 e~~~l~~~ 176 (240)
....|..+
T Consensus 101 ~~~~L~~~ 108 (135)
T 1q06_A 101 MRDQLLAL 108 (135)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 175
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=24.63 E-value=17 Score=24.58 Aligned_cols=44 Identities=23% Similarity=0.323 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCCCCceeeecc
Q 026325 90 LRLSKEQSRLLEESFRH-----NHTLNPKQKEELATQLKLKPRQVEVWF 133 (240)
Q Consensus 90 ~~~t~~Q~~~Le~~F~~-----~~~p~~~~r~~LA~~l~L~~~qVkvWF 133 (240)
..++.+++..|...|.. +.+.+..+...+...+|++..+|+.+|
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~ 67 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVF 67 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHH
Confidence 45788899999999864 357888888888888886655554444
No 176
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=24.59 E-value=1e+02 Score=23.03 Aligned_cols=30 Identities=10% Similarity=0.012 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHhC
Q 026325 94 KEQSRLLEESFRHNHTLNPKQKEELATQLK 123 (240)
Q Consensus 94 ~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~ 123 (240)
.+-...|+.|+.....|...+.+.|++-|.
T Consensus 39 ~evK~lL~~Wv~s~~~P~~~DV~~l~~yL~ 68 (124)
T 3vu7_H 39 NDVKTLLREWITTISDPMEEDILQVVKYCT 68 (124)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455778899999889999999999887763
No 177
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=24.25 E-value=91 Score=18.23 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=13.3
Q ss_pred hchHHHHHHHHHHHHHHHhc
Q 026325 157 GSLTEQNRRLQREVEELRAM 176 (240)
Q Consensus 157 ~~l~~e~~~l~~e~~~l~~~ 176 (240)
+.|..++..|+.|+..|+.+
T Consensus 11 EeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 11 EELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 34556677777777777654
No 178
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=23.97 E-value=14 Score=23.09 Aligned_cols=27 Identities=15% Similarity=0.227 Sum_probs=21.5
Q ss_pred HHHHHHhCCCCceeeecchhhhhHHHH
Q 026325 116 EELATQLKLKPRQVEVWFQNRRARSKL 142 (240)
Q Consensus 116 ~~LA~~l~L~~~qVkvWFqNRR~k~Kk 142 (240)
.++|..+|+++..|+.+..+-+.|.+.
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 578999999999999887766655544
No 179
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=23.87 E-value=40 Score=24.41 Aligned_cols=41 Identities=15% Similarity=0.206 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchh
Q 026325 90 LRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQN 135 (240)
Q Consensus 90 ~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqN 135 (240)
..++.++...+...+... + -..++|+.+|++...|..|+..
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHc
Confidence 467888877776666543 2 2457899999999999999864
No 180
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=23.72 E-value=1e+02 Score=17.10 Aligned_cols=27 Identities=26% Similarity=0.323 Sum_probs=15.6
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHH
Q 026325 148 ECEYLKRWFGSLTEQNRRLQREVEELR 174 (240)
Q Consensus 148 ~~~~l~~~~~~l~~e~~~l~~e~~~l~ 174 (240)
+...|+++...|..|...|+=|+..|+
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666666665554
No 181
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=23.24 E-value=27 Score=21.33 Aligned_cols=36 Identities=14% Similarity=0.259 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecch
Q 026325 94 KEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQ 134 (240)
Q Consensus 94 ~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFq 134 (240)
.++...+...|... + ...++|+.+|++...|..|+.
T Consensus 18 ~~~~~~i~~l~~~g-~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKMG-Y----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHTT-C----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 55555555555432 2 255789999999999988864
No 182
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=22.58 E-value=1.4e+02 Score=20.61 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=11.0
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHH
Q 026325 147 MECEYLKRWFGSLTEQNRRLQREVE 171 (240)
Q Consensus 147 ~~~~~l~~~~~~l~~e~~~l~~e~~ 171 (240)
.++..|....+.+.+|...|+.++.
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~ 58 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENK 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433
No 183
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=22.52 E-value=95 Score=17.93 Aligned_cols=20 Identities=5% Similarity=0.312 Sum_probs=15.7
Q ss_pred hchHHHHHHHHHHHHHHHhc
Q 026325 157 GSLTEQNRRLQREVEELRAM 176 (240)
Q Consensus 157 ~~l~~e~~~l~~e~~~l~~~ 176 (240)
+.|..+|..|..|+..|+.+
T Consensus 11 EeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 11 EEILSKGHHICNELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHH
Confidence 44667888889999888875
No 184
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=22.09 E-value=77 Score=21.85 Aligned_cols=60 Identities=12% Similarity=0.061 Sum_probs=31.0
Q ss_pred HHHHHHHhCCCCceeeecchhhhhHHHHHHhHHHHHHHHHHhhchHHHHHHHHHHHHHHHh
Q 026325 115 KEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRA 175 (240)
Q Consensus 115 r~~LA~~l~L~~~qVkvWFqNRR~k~Kkk~~~~~~~~l~~~~~~l~~e~~~l~~e~~~l~~ 175 (240)
....++.+|++-..|+..+..+..... .....-...+......+.++..+|+.....|..
T Consensus 8 ~I~~lr~lGfsL~eIk~~l~~~~~~~~-~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~ 67 (99)
T 1q08_A 8 FIRHARQLGFSLESIRELLSIRIDPEH-HTCQESKGIVQERLQEVEARIAELQSMQRSLQR 67 (99)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHCGGG-CBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHhCCCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577888888888887765431110 001112234444445555555555555555444
No 185
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=22.01 E-value=23 Score=26.96 Aligned_cols=42 Identities=14% Similarity=0.093 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhH
Q 026325 96 QSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRAR 139 (240)
Q Consensus 96 Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k 139 (240)
-+..-...|....| . ....+||+..|++..-|..+|.||-.-
T Consensus 20 Il~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~L 61 (194)
T 2q24_A 20 ILAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREAL 61 (194)
T ss_dssp HHHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHHH
Confidence 34555666888888 5 678899999999999999999997543
No 186
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=21.86 E-value=38 Score=24.74 Aligned_cols=23 Identities=4% Similarity=-0.051 Sum_probs=19.4
Q ss_pred HHHHHHhCCCCceeeecchhhhh
Q 026325 116 EELATQLKLKPRQVEVWFQNRRA 138 (240)
Q Consensus 116 ~~LA~~l~L~~~qVkvWFqNRR~ 138 (240)
.+||+.+|++...|..|-.+++.
T Consensus 88 ~~la~~~g~s~~~i~~~E~g~~~ 110 (133)
T 3o9x_A 88 KEASEIFGGGVNAFSRYEKGNAQ 110 (133)
T ss_dssp HHHHHHHCSCTTHHHHHHHTSSC
T ss_pred HHHHHHHCCCHHHHHHHHCCCCC
Confidence 47899999999999999887653
No 187
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=21.73 E-value=72 Score=25.68 Aligned_cols=16 Identities=38% Similarity=0.466 Sum_probs=7.6
Q ss_pred chHHHHHHHHHHHHHH
Q 026325 158 SLTEQNRRLQREVEEL 173 (240)
Q Consensus 158 ~l~~e~~~l~~e~~~l 173 (240)
.|+.+|..|++|++.|
T Consensus 165 ~L~a~N~hLqkENeRL 180 (186)
T 3q4f_C 165 ENQAKNEHLQKENERL 180 (186)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444455544444
No 188
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=21.58 E-value=20 Score=28.48 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhH
Q 026325 92 LSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRAR 139 (240)
Q Consensus 92 ~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k 139 (240)
+++.+..+|.-.|.. .....++|..+|++...|+.++..-|.+
T Consensus 199 L~~~~r~vl~l~~~~-----g~s~~EIA~~lgis~~tV~~~~~ra~~~ 241 (243)
T 1l0o_C 199 LDERERLIVYLRYYK-----DQTQSEVASRLGISQVQMSRLEKKILQH 241 (243)
T ss_dssp ------------------------------------------------
T ss_pred CCHHHHHHHHHHHhc-----CCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 566666666654432 2345689999999999999888755444
No 189
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=21.50 E-value=1.2e+02 Score=17.53 Aligned_cols=21 Identities=5% Similarity=0.237 Sum_probs=15.9
Q ss_pred hchHHHHHHHHHHHHHHHhcc
Q 026325 157 GSLTEQNRRLQREVEELRAMK 177 (240)
Q Consensus 157 ~~l~~e~~~l~~e~~~l~~~~ 177 (240)
+.|..+|..|..|+..|+.+.
T Consensus 11 EeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 11 EEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 446678888888888888753
No 190
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=21.45 E-value=13 Score=23.19 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCCceeeecchhhh
Q 026325 115 KEELATQLKLKPRQVEVWFQNRR 137 (240)
Q Consensus 115 r~~LA~~l~L~~~qVkvWFqNRR 137 (240)
..+||+.+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998764
No 191
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=21.38 E-value=47 Score=26.82 Aligned_cols=47 Identities=19% Similarity=0.111 Sum_probs=34.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhhhhHHH
Q 026325 89 KLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSK 141 (240)
Q Consensus 89 R~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNRR~k~K 141 (240)
...+++.+.++|.-.+. .. .-.++|..||+++..|+....|-+.|..
T Consensus 171 ~~~Lt~~e~~vl~~~~~-g~-----s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAV-GK-----TMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCCHHHHHHHHHHTT-TC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHc-CC-----CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 44699999988866432 21 2468899999999999887776655544
No 192
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=21.07 E-value=45 Score=23.81 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=20.9
Q ss_pred HHHHHHHhCCCCceeeecchhhhhH
Q 026325 115 KEELATQLKLKPRQVEVWFQNRRAR 139 (240)
Q Consensus 115 r~~LA~~l~L~~~qVkvWFqNRR~k 139 (240)
++.|+.+.|+++.+++.+|..|--+
T Consensus 48 K~~I~~k~Gip~~qQrLif~Gk~Lk 72 (93)
T 3plu_A 48 KKVLSLQIGTQPNKIVLQKGGSVLK 72 (93)
T ss_dssp HHHHHHHHTCCGGGEEEEETTEECC
T ss_pred HHHHHHHhCCCHHHEEEEeCCEEcc
Confidence 6678999999999999999876543
No 193
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=20.79 E-value=14 Score=24.49 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCCceeeecchhhh
Q 026325 115 KEELATQLKLKPRQVEVWFQNRR 137 (240)
Q Consensus 115 r~~LA~~l~L~~~qVkvWFqNRR 137 (240)
..+||+.+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46899999999999999998765
No 194
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=20.68 E-value=14 Score=23.19 Aligned_cols=24 Identities=8% Similarity=0.270 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCCceeeecchhhhh
Q 026325 115 KEELATQLKLKPRQVEVWFQNRRA 138 (240)
Q Consensus 115 r~~LA~~l~L~~~qVkvWFqNRR~ 138 (240)
..+||+.+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 467999999999999999987653
No 195
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=20.56 E-value=2.2e+02 Score=19.73 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=17.2
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHh
Q 026325 152 LKRWFGSLTEQNRRLQREVEELRA 175 (240)
Q Consensus 152 l~~~~~~l~~e~~~l~~e~~~l~~ 175 (240)
....+..|..|.++|+.++.+|+.
T Consensus 50 ae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 50 AEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455677888888888888764
No 196
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=20.44 E-value=1.4e+02 Score=24.35 Aligned_cols=34 Identities=6% Similarity=-0.137 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCceeeecchhh
Q 026325 90 LRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNR 136 (240)
Q Consensus 90 ~~~t~~Q~~~Le~~F~~~~~p~~~~r~~LA~~l~L~~~qVkvWFqNR 136 (240)
+.|+..++..|... ...+.+|++-.+|+..+.++
T Consensus 43 R~y~~~~~~~l~~i-------------~~l~~~g~~l~~i~~~~~~~ 76 (278)
T 1r8e_A 43 RYYTDSQLIHLDLI-------------KSLKYIGTPLEEMKKAQDLE 76 (278)
T ss_dssp EEEETGGGGHHHHH-------------HHHHHTTCCHHHHHHHTTSC
T ss_pred cccCHHHHHHHHHH-------------HHHHHCCCCHHHHHHHHHhC
Confidence 45777777777433 22355666666666666544
No 197
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=20.39 E-value=30 Score=23.81 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCCCCceeeecc
Q 026325 91 RLSKEQSRLLEESFRH-----NHTLNPKQKEELATQLKLKPRQVEVWF 133 (240)
Q Consensus 91 ~~t~~Q~~~Le~~F~~-----~~~p~~~~r~~LA~~l~L~~~qVkvWF 133 (240)
.++.++...|+..|.. +.+.+..+...+...+|++...|+.+|
T Consensus 3 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~ 50 (95)
T 1c07_A 3 VVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIW 50 (95)
T ss_dssp SSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHH
Confidence 3677888999999853 356888888777777777665554443
Done!