BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026326
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DOA|B Chain B, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 219
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 99/183 (54%), Gaps = 16/183 (8%)
Query: 64 GFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLG--CVEGDLNGQMEPEVKFHSIGIISDDF 121
+ P S++E E DKDD+SLR++KE LLG V D N P V + ++
Sbjct: 41 NYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNV---PNVVVTRLTLVCS-- 95
Query: 122 GEITTPLPIDKNQNGHV------LFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGL 175
T P P++ + G + F LKEG +++K++F V IVSG+ Y ++ G+
Sbjct: 96 ---TAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGV 152
Query: 176 QVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFE 235
++D++ M+G++ P+ E Y E P G+LARG Y+ K +F DDDR H+ ++
Sbjct: 153 KIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLT 212
Query: 236 IKK 238
IKK
Sbjct: 213 IKK 215
>pdb|4F38|B Chain B, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 204
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 99/183 (54%), Gaps = 16/183 (8%)
Query: 64 GFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLG--CVEGDLNGQMEPEVKFHSIGIISDDF 121
+ P S++E E DKDD+SLR++KE LLG V D N P V + ++
Sbjct: 26 NYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNV---PNVVVTRLTLVCS-- 80
Query: 122 GEITTPLPIDKNQNGHV------LFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGL 175
T P P++ + G + F LKEG +++K++F V IVSG+ Y ++ G+
Sbjct: 81 ---TAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGV 137
Query: 176 QVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFE 235
++D++ M+G++ P+ E Y E P G+LARG Y+ K +F DDDR H+ ++
Sbjct: 138 KIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLT 197
Query: 236 IKK 238
IKK
Sbjct: 198 IKK 200
>pdb|1FST|A Chain A, Crystal Structure Of Truncated Human Rhogdi Triple Mutant
pdb|1FST|B Chain B, Crystal Structure Of Truncated Human Rhogdi Triple Mutant
Length = 182
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 98/182 (53%), Gaps = 16/182 (8%)
Query: 65 FSPGPLVSLKEQIEKDKDDDSLRRWKEKLLG--CVEGDLNGQMEPEVKFHSIGIISDDFG 122
+ P S++E E DKDD+SLR++KE LLG V D N P V + ++
Sbjct: 5 YKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPN---VPNVVVTGLTLVCS--- 58
Query: 123 EITTPLPIDKNQNGHV------LFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQ 176
+ P P++ + G + F LKEG +++K++F V IVSG+ Y ++AG+
Sbjct: 59 --SAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRAGVA 116
Query: 177 VDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEI 236
+D + M+G++ P+ E Y E P G+LARG YS K +F DDD+ H+ ++ I
Sbjct: 117 IDATDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 176
Query: 237 KK 238
KK
Sbjct: 177 KK 178
>pdb|1CC0|E Chain E, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|F Chain F, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1HH4|D Chain D, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|E Chain E, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 204
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 99/183 (54%), Gaps = 16/183 (8%)
Query: 64 GFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLG--CVEGDLNGQMEPEVKFHSIGIISDDF 121
+ P S++E E DKDD+SLR++KE LLG V D N P V + ++
Sbjct: 26 NYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNV---PNVVVTGLTLVCS-- 80
Query: 122 GEITTPLPIDKNQNGHV------LFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGL 175
+ P P++ + G + F LKEG +++K++F V IVSG+ Y ++ G+
Sbjct: 81 ---SAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGV 137
Query: 176 QVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFE 235
++D++ M+G++ P+ E Y E P G+LARG YS K +F DDD+ H+ ++
Sbjct: 138 KIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLT 197
Query: 236 IKK 238
IKK
Sbjct: 198 IKK 200
>pdb|1DS6|B Chain B, Crystal Structure Of A Rac-Rhogdi Complex
Length = 180
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 96/176 (54%), Gaps = 4/176 (2%)
Query: 65 FSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDL-NGQMEPEVKFHSIGIISDDF-G 122
+ P P SLKE E DKDD+SL ++K+ LLG +G + P V + ++ + G
Sbjct: 3 YKPPPQKSLKELQEMDKDDESLIKYKKTLLG--DGPVVTDPKAPNVVVTRLTLVCESAPG 60
Query: 123 EITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKG 182
IT L D LKEGS +++K+ F V +IVSGL Y ++ G++VD++
Sbjct: 61 PITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATF 120
Query: 183 MLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
M+G++ P+ E Y E P G+LARG Y K F DDD++ H+ ++ IKK
Sbjct: 121 MVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKK 176
>pdb|1FSO|A Chain A, Crystal Structure Of Truncated Human Rhogdi Quadruple
Mutant
Length = 139
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 61/99 (61%)
Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
F LKEG +++K++F V IVSG+ Y ++AG+ +D + M+G++ P+ E Y
Sbjct: 37 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRAGVAIDATDYMVGSYGPRAEEYEFLTP 96
Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
E P G+LARG YS K +F DDD+ H+ ++F IKK
Sbjct: 97 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNFTIKK 135
>pdb|2JHW|A Chain A, Crystal Structure Of Rhogdi E155a, E157a Mutant
pdb|2JHW|B Chain B, Crystal Structure Of Rhogdi E155a, E157a Mutant
Length = 138
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 61/99 (61%)
Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
F LKEG +++K++F V IVSG+ Y ++ G+++D++ M+G++ P+ E Y
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEAYAFLTP 97
Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
E P G+LARG YS K +F DDD+ H+ ++ IKK
Sbjct: 98 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKK 136
>pdb|1AJW|A Chain A, Structure Of Rhogdi: A C-Terminal Binding Domain Targets
An N-Terminal Inhibitory Peptide To Gtpases, Nmr, 20
Structures
pdb|1GDF|A Chain A, Structure Of Rhogdi: A C-Terminal Binding Domain Targets
An N-Terminal Inhibitory Peptide To Gtpases, Nmr,
Minimized Average Structure
Length = 145
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 69/120 (57%), Gaps = 6/120 (5%)
Query: 125 TTPLPIDKNQNGHV------LFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVD 178
T P P++ + G + F LKEG +++K++F V IVSG+ Y ++ G+++D
Sbjct: 22 TAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKID 81
Query: 179 QSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
++ M+G++ P+ E Y E P G+LARG Y+ K +F DDDR H+ ++ IKK
Sbjct: 82 KTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTIKK 141
>pdb|2JHZ|A Chain A, Crystal Structure Of Rhogdi E155s, E157s Mutant
pdb|2JHZ|B Chain B, Crystal Structure Of Rhogdi E155s, E157s Mutant
Length = 138
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 61/99 (61%)
Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
F LKEG +++K++F V IVSG+ Y ++ G+++D++ M+G++ P+ E Y
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAESYSFLTP 97
Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
E P G+LARG YS K +F DDD+ H+ ++ IKK
Sbjct: 98 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKK 136
>pdb|1KMT|A Chain A, Crystal Structure Of Rhogdi Glu(154,155)ala Mutant
pdb|1KMT|B Chain B, Crystal Structure Of Rhogdi Glu(154,155)ala Mutant
Length = 141
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 11/142 (7%)
Query: 103 GQMEPEVKFHSIGIISDDFGEITTPLPIDKNQNGHV------LFTLKEGSRFQLKLTFNV 156
G M P V + ++ + P P++ + G + F LKEG +++K++F V
Sbjct: 1 GAMVPNVVVTGLTLVCS-----SAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRV 55
Query: 157 MHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAK 216
IVSG+ Y ++ G+++D++ M+G++ P+ Y E P G+LARG YS K
Sbjct: 56 NREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIK 115
Query: 217 LKFEDDDRRCHMELNYSFEIKK 238
+F DDD+ H+ ++ IKK
Sbjct: 116 SRFTDDDKTDHLSWEWNLTIKK 137
>pdb|2BXW|A Chain A, Crystal Structure Of Rhogdi Lys(135,138,141)tyr Mutant
pdb|2BXW|B Chain B, Crystal Structure Of Rhogdi Lys(135,138,141)tyr Mutant
Length = 141
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 11/142 (7%)
Query: 103 GQMEPEVKFHSIGIISDDFGEITTPLPIDKNQNGHV------LFTLKEGSRFQLKLTFNV 156
G M P V + ++ + P P++ + G + F LKEG +++K++F V
Sbjct: 1 GAMVPNVVVTGLTLVCS-----SAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRV 55
Query: 157 MHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAK 216
IVSG+ Y ++ G+ +D + M+G++ P+ E Y E P G+LARG YS K
Sbjct: 56 NREIVSGMKYIQHTYRYGVYIDYTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIK 115
Query: 217 LKFEDDDRRCHMELNYSFEIKK 238
+F DDD+ H+ ++ IKK
Sbjct: 116 SRFTDDDKTDHLSWEWNLTIKK 137
>pdb|2JHX|A Chain A, Crystal Structure Of Rhogdi E155h, E157h Mutant
pdb|2JHX|B Chain B, Crystal Structure Of Rhogdi E155h, E157h Mutant
pdb|2JHY|A Chain A, Crystal Structure Of Rhogdi E155h, E157h Mutant
Length = 138
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 61/99 (61%)
Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
F LKEG +++K++F V IVSG+ Y ++ G+++D++ M+G++ P+ E Y
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEHYHFLTP 97
Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
E P G+LARG YS K +F DDD+ H+ ++ IKK
Sbjct: 98 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKK 136
>pdb|1FT3|A Chain A, Crystal Structure Of Truncated Rhogdi K141a Mutant
pdb|1FT3|B Chain B, Crystal Structure Of Truncated Rhogdi K141a Mutant
Length = 139
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 60/99 (60%)
Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
F LKEG +++K++F V IVSG+ Y ++ G+++D + M+G++ P+ E Y
Sbjct: 37 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDATDYMVGSYGPRAEEYEFLTP 96
Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
E P G+LARG YS K +F DDD+ H+ ++ IKK
Sbjct: 97 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKK 135
>pdb|2JHS|A Chain A, Crystal Structure Of Rhogdi K135h,K138h,K141h Mutant
Length = 138
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 59/99 (59%)
Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
F LKEG +++K++F V IVSG+ Y ++ G+ +D + M+G++ P+ E Y
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRHGVHIDHTDYMVGSYGPRAEEYEFLTP 97
Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
E P G+LARG YS K +F DDD+ H+ ++ IKK
Sbjct: 98 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKK 136
>pdb|2JHT|A Chain A, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
pdb|2JHT|B Chain B, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
pdb|2JHT|C Chain C, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
pdb|2JHT|D Chain D, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
Length = 138
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 59/99 (59%)
Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
F LKEG +++K++F V IVSG+ Y ++ G+ +D + M+G++ P+ E Y
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRTGVTIDTTDYMVGSYGPRAEEYEFLTP 97
Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
E P G+LARG YS K +F DDD+ H+ ++ IKK
Sbjct: 98 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKK 136
>pdb|1QVY|A Chain A, Crystal Structure Of Rhogdi K(199,200)r Double Mutant
pdb|1QVY|B Chain B, Crystal Structure Of Rhogdi K(199,200)r Double Mutant
pdb|1QVY|C Chain C, Crystal Structure Of Rhogdi K(199,200)r Double Mutant
pdb|1QVY|D Chain D, Crystal Structure Of Rhogdi K(199,200)r Double Mutant
Length = 139
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 61/99 (61%)
Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
F LKEG +++K++F V IVSG+ Y ++ G+++D++ M+G++ P+ E Y
Sbjct: 37 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 96
Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
E P G+LARG YS K +F DDD+ H+ ++ I++
Sbjct: 97 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIRR 135
>pdb|2JHU|A Chain A, Crystal Structure Of Rhogdi E154a,E155a Mutant
pdb|2JHU|B Chain B, Crystal Structure Of Rhogdi E154a,E155a Mutant
pdb|2JHV|A Chain A, Crystal Structure Of Rhogdi E154a,e155a Mutant
pdb|2JHV|B Chain B, Crystal Structure Of Rhogdi E154a,e155a Mutant
pdb|2JHV|C Chain C, Crystal Structure Of Rhogdi E154a,e155a Mutant
pdb|2JHV|D Chain D, Crystal Structure Of Rhogdi E154a,e155a Mutant
pdb|2JHV|E Chain E, Crystal Structure Of Rhogdi E154a,e155a Mutant
pdb|2JHV|F Chain F, Crystal Structure Of Rhogdi E154a,e155a Mutant
Length = 138
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 60/99 (60%)
Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
F LKEG +++K++F V IVSG+ Y ++ G+++D++ M+G++ P+ Y
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAAAYEFLTP 97
Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
E P G+LARG YS K +F DDD+ H+ ++ IKK
Sbjct: 98 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKK 136
>pdb|2JI0|A Chain A, Crystal Structure Of Rhogdi K138y, K141y Mutant
Length = 138
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 59/99 (59%)
Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
F LKEG +++K++F V IVSG+ Y ++ G+ +D + M+G++ P+ E Y
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVYIDYTDYMVGSYGPRAEEYEFLTP 97
Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
E P G+LARG YS K +F DDD+ H+ ++ IKK
Sbjct: 98 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKK 136
>pdb|1FT0|A Chain A, Crystal Structure Of Truncated Human Rhogdi K113a Mutant
pdb|1FT0|B Chain B, Crystal Structure Of Truncated Human Rhogdi K113a Mutant
Length = 139
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 60/99 (60%)
Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
F LKEG +++ ++F V IVSG+ Y ++ G+++D++ M+G++ P+ E Y
Sbjct: 37 FVLKEGVEYRIAISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 96
Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
E P G+LARG YS K +F DDD+ H+ ++ IKK
Sbjct: 97 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKK 135
>pdb|1RHO|A Chain A, Structure Of Rho Guanine Nucleotide Dissociation Inhibitor
pdb|1RHO|B Chain B, Structure Of Rho Guanine Nucleotide Dissociation Inhibitor
pdb|1RHO|C Chain C, Structure Of Rho Guanine Nucleotide Dissociation Inhibitor
Length = 145
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 58/99 (58%)
Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
F LKEG +++K++F V IVSG Y ++ G+++D++ +G++ P+ E Y
Sbjct: 44 FVLKEGVEYRIKISFRVNREIVSGXKYIEHTYRKGVKIDKTDYXVGSYGPRAEEYEFLTP 103
Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
E P G LARG YS K +F DDD+ H+ ++ IKK
Sbjct: 104 VEEAPKGXLARGSYSIKSRFTDDDKTDHLSWEWNLTIKK 142
>pdb|3LVC|A Chain A, Crystal Structure Of Gfp-Like Protein Acegfp_g222e (A.
Coeru Colorless Form.
pdb|3LVC|B Chain B, Crystal Structure Of Gfp-Like Protein Acegfp_g222e (A.
Coeru Colorless Form.
pdb|3LVD|A Chain A, Crystal Structure Of Gfp-Like Protein Acegfp_g222e (A.
Coeru Uv-Photoconverted Green Form.
pdb|3LVD|B Chain B, Crystal Structure Of Gfp-Like Protein Acegfp_g222e (A.
Coeru Uv-Photoconverted Green Form
Length = 236
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 98 EGDLNGQMEPEVKF------HSIGIISDDFGEITTPL--PIDKNQNGHVLFTLKEGSRFQ 149
E D N + EVKF + I + DF E L ++ N N H ++ + + ++
Sbjct: 99 EDDGNYKSRAEVKFEGDTLVNRIELTGTDFKEDGNILGNKMEYNYNAHNVYIMTDKAKNG 158
Query: 150 LKLTFNVMHNIVSG 163
+K+ F + HNI G
Sbjct: 159 IKVNFKIRHNIEDG 172
>pdb|3LVA|A Chain A, Crystal Structure Of Colorless Gfp-Like Protein From
Aequore Coerulescens
pdb|3LVA|B Chain B, Crystal Structure Of Colorless Gfp-Like Protein From
Aequore Coerulescens
Length = 236
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 98 EGDLNGQMEPEVKF------HSIGIISDDFGEITTPL--PIDKNQNGHVLFTLKEGSRFQ 149
E D N + EVKF + I + DF E L ++ N N H ++ + + ++
Sbjct: 99 EDDGNYKSRAEVKFEGDTLVNRIELTGTDFKEDGNILGNKMEYNYNAHNVYIMTDKAKNG 158
Query: 150 LKLTFNVMHNIVSG 163
+K+ F + HNI G
Sbjct: 159 IKVNFKIRHNIEDG 172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,887,282
Number of Sequences: 62578
Number of extensions: 276171
Number of successful extensions: 468
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 436
Number of HSP's gapped (non-prelim): 67
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)