BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026326
(240 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SFC6|GDIR_ARATH Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1
PE=1 SV=1
Length = 240
Score = 203 bits (516), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 106/204 (51%), Positives = 144/204 (70%), Gaps = 13/204 (6%)
Query: 36 ISEVLLADEEEEEEYDDEDVKEGDGVVAGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLG 95
+SE L EEEE D+D K GP ++KE +EKDKDD+SLR+WKE+LLG
Sbjct: 44 MSESSLCATEEEE---DDDSK--------LQLGPQYTIKEHLEKDKDDESLRKWKEQLLG 92
Query: 96 CVE-GDLNGQMEPEVKFHSIGIISDDFGEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTF 154
V+ ++ ++PEV+ S+ IIS +I +P + N G + FTLKEGS++ LK TF
Sbjct: 93 SVDVTNIGETLDPEVRIDSLAIISPGRPDIVLLVPENGNPKG-MWFTLKEGSKYNLKFTF 151
Query: 155 NVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYS 214
+V +NIVSGL Y+NTVWK G++VD++K MLGTF+PQ EPY H + EETTPSG+ ARG YS
Sbjct: 152 HVNNNIVSGLRYTNTVWKTGVKVDRAKEMLGTFSPQLEPYNHVMPEETTPSGMFARGSYS 211
Query: 215 AKLKFEDDDRRCHMELNYSFEIKK 238
A+ KF DDD +C++E+NYSF+I+K
Sbjct: 212 ARTKFLDDDNKCYLEINYSFDIRK 235
>sp|Q95UQ1|GDIR1_DICDI Putative rho GDP-dissociation inhibitor 1 OS=Dictyostelium
discoideum GN=rdiA PE=1 SV=1
Length = 197
Score = 115 bits (287), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 108/194 (55%), Gaps = 16/194 (8%)
Query: 54 DVKEGDGVVAGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGC-VEGDLNGQMEPEVKFH 112
D E + V + PG VS+ + ++D +D++L+R+KE LLG V + + +K
Sbjct: 3 DNHEEESNVPAYVPGKHVSVDQLKQQDAEDEALKRYKESLLGTGVHAPKDDPRKLVIKEM 62
Query: 113 SIGIISDDFGEITTPLPIDKNQNGHVL----FTLKEGSRFQLKLTFNVMHNIVSGLTYSN 168
I I G T P+D + + F LKE +++ LTFN+ H+IVSGL +N
Sbjct: 63 KIQI----EGRPDTIYPLDTKELIKEMKTKPFVLKESCHYKITLTFNIQHDIVSGLKQTN 118
Query: 169 TVWKAGLQVDQSKGMLGTFAPQREPYVHTLEE-----ETTPSGVLARGLYSAKLKFEDDD 223
TV++ G++V K MLG+FAPQ H++ E PSG+LARG Y+AK+ F DDD
Sbjct: 119 TVYRKGIKVSTEKHMLGSFAPQ--ALAHSVTNPRHGWEEAPSGMLARGSYTAKVVFTDDD 176
Query: 224 RRCHMELNYSFEIK 237
H+ + Y+F IK
Sbjct: 177 NEEHLSVEYAFSIK 190
>sp|Q61599|GDIR2_MOUSE Rho GDP-dissociation inhibitor 2 OS=Mus musculus GN=Arhgdib PE=1
SV=3
Length = 200
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 104/198 (52%), Gaps = 8/198 (4%)
Query: 42 ADEEEEEEYDDEDVKEGDGVVAGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDL 101
A + EE DD D K + P P SLKE E DKDD+SL ++K+ LLG V
Sbjct: 6 AQPQLEEADDDLDSK------LNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDVPVVA 59
Query: 102 NGQMEPEVKFHSIGIISDDF-GEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNI 160
+ + P V + ++ D G IT L D F LKEG +++K+ F V +I
Sbjct: 60 DPTV-PNVTVTRLSLVCDSAPGPITMDLTGDLEALKKDTFVLKEGIEYRVKINFKVNKDI 118
Query: 161 VSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFE 220
VSGL Y ++ G++VD++ M+G++ P+ E Y E P G+LARG Y K F
Sbjct: 119 VSGLKYVQHTYRTGMRVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFT 178
Query: 221 DDDRRCHMELNYSFEIKK 238
DDD++ H+ ++ IKK
Sbjct: 179 DDDKQDHLTWEWNLAIKK 196
>sp|P19803|GDIR1_BOVIN Rho GDP-dissociation inhibitor 1 OS=Bos taurus GN=ARHGDIA PE=1 SV=3
Length = 204
Score = 108 bits (269), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 111/219 (50%), Gaps = 27/219 (12%)
Query: 28 MKTEKPLTISEVLLADEEEEEEYDDEDVKEGDGVVAGFSPGPLVSLKEQIEKDKDDDSLR 87
M ++P +A E EE+E+ + P S++E E DKDD+SLR
Sbjct: 1 MAEQEPTAEQLAQIAAENEEDEHS-----------VNYKPPAQKSIQEIQELDKDDESLR 49
Query: 88 RWKEKLLG--CVEGDLNGQMEPEVKFHSIGIISDDFGEITTPLPIDKNQNGHV------L 139
++KE LLG V D N P V + ++ T P P++ + G +
Sbjct: 50 KYKEALLGRVAVSADPNV---PNVVVTRLTLVCS-----TAPGPLELDLTGDLESFKKQS 101
Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
F LKEG +++K++F V IVSG+ Y ++ G+++D++ M+G++ P+ E Y
Sbjct: 102 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 161
Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
E P G+LARG Y+ K +F DDDR H+ ++ IKK
Sbjct: 162 MEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTIKK 200
>sp|Q9TU03|GDIR2_BOVIN Rho GDP-dissociation inhibitor 2 OS=Bos taurus GN=ARHGDIB PE=2 SV=3
Length = 200
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 105/198 (53%), Gaps = 7/198 (3%)
Query: 44 EEEEEEYDDEDVKEGDGVVAGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLG--CVEGDL 101
E+ E + +ED E DG + + P P SLKE E DKDD+SL ++K+ LLG V D
Sbjct: 3 EKAPEPHVEEDDDELDGKL-NYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDGPVVADP 61
Query: 102 NGQMEPEVKFHSIGIISDDF-GEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNI 160
P V + ++ + G IT L D F LKEG +++K+ F V +I
Sbjct: 62 TA---PNVTVTRLTLVCESAPGPITMDLTGDLEALKKETFVLKEGVEYRVKINFKVNKDI 118
Query: 161 VSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFE 220
VSGL Y ++ G++VD++ M+G++ P+ E Y E P G+LARG Y K F
Sbjct: 119 VSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPIEEAPKGMLARGTYHNKSFFT 178
Query: 221 DDDRRCHMELNYSFEIKK 238
DDD+ H+ ++ IKK
Sbjct: 179 DDDKHDHLTWEWNLSIKK 196
>sp|Q4R4J0|GDIR1_MACFA Rho GDP-dissociation inhibitor 1 OS=Macaca fascicularis GN=ARHGDIA
PE=2 SV=1
Length = 204
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 111/219 (50%), Gaps = 27/219 (12%)
Query: 28 MKTEKPLTISEVLLADEEEEEEYDDEDVKEGDGVVAGFSPGPLVSLKEQIEKDKDDDSLR 87
M ++P +A E EE+E+ + P S++E E DKDD+SLR
Sbjct: 1 MAEQEPTAEQLAQIAAENEEDEHS-----------VNYKPPAQKSIQEIQELDKDDESLR 49
Query: 88 RWKEKLLG--CVEGDLNGQMEPEVKFHSIGIISDDFGEITTPLPIDKNQNGHV------L 139
++KE LLG V D N P V + ++ + P P++ + G +
Sbjct: 50 KYKEALLGRVAVSADPNV---PNVVVTGLTLVCS-----SAPGPLELDLTGDLESFKKQS 101
Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
F LKEG +++K++F V IVSG+ Y ++ G+++D++ M+G++ P+ E Y
Sbjct: 102 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 161
Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
E P G+LARG YS K +F DDD+ H+ ++ IKK
Sbjct: 162 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKK 200
>sp|P52565|GDIR1_HUMAN Rho GDP-dissociation inhibitor 1 OS=Homo sapiens GN=ARHGDIA PE=1
SV=3
Length = 204
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 111/219 (50%), Gaps = 27/219 (12%)
Query: 28 MKTEKPLTISEVLLADEEEEEEYDDEDVKEGDGVVAGFSPGPLVSLKEQIEKDKDDDSLR 87
M ++P +A E EE+E+ + P S++E E DKDD+SLR
Sbjct: 1 MAEQEPTAEQLAQIAAENEEDEHS-----------VNYKPPAQKSIQEIQELDKDDESLR 49
Query: 88 RWKEKLLG--CVEGDLNGQMEPEVKFHSIGIISDDFGEITTPLPIDKNQNGHV------L 139
++KE LLG V D N P V + ++ + P P++ + G +
Sbjct: 50 KYKEALLGRVAVSADPNV---PNVVVTGLTLVCS-----SAPGPLELDLTGDLESFKKQS 101
Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
F LKEG +++K++F V IVSG+ Y ++ G+++D++ M+G++ P+ E Y
Sbjct: 102 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 161
Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
E P G+LARG YS K +F DDD+ H+ ++ IKK
Sbjct: 162 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKK 200
>sp|Q5XI73|GDIR1_RAT Rho GDP-dissociation inhibitor 1 OS=Rattus norvegicus GN=Arhgdia
PE=1 SV=1
Length = 204
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 111/219 (50%), Gaps = 27/219 (12%)
Query: 28 MKTEKPLTISEVLLADEEEEEEYDDEDVKEGDGVVAGFSPGPLVSLKEQIEKDKDDDSLR 87
M ++P +A E EE+E+ + P S++E E DKDD+SLR
Sbjct: 1 MAEQEPTAEQLAQIAAENEEDEHS-----------VNYKPPAQKSIQEIQELDKDDESLR 49
Query: 88 RWKEKLLG--CVEGDLNGQMEPEVKFHSIGIISDDFGEITTPLPIDKNQNGHV------L 139
++KE LLG V D N P V + ++ T P P++ + G +
Sbjct: 50 KYKEALLGRVAVSADPNV---PNVIVTRLTLVCS-----TAPGPLELDLTGDLESFKKQS 101
Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
F LKEG +++K++F V IVSG+ Y ++ G+++D++ M+G++ P+ E Y
Sbjct: 102 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 161
Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
E P G+LARG Y+ K +F DDD+ H+ ++ IKK
Sbjct: 162 MEEAPKGMLARGSYNIKSRFTDDDKTDHLSWEWNLTIKK 200
>sp|Q99PT1|GDIR1_MOUSE Rho GDP-dissociation inhibitor 1 OS=Mus musculus GN=Arhgdia PE=1
SV=3
Length = 204
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 111/219 (50%), Gaps = 27/219 (12%)
Query: 28 MKTEKPLTISEVLLADEEEEEEYDDEDVKEGDGVVAGFSPGPLVSLKEQIEKDKDDDSLR 87
M ++P +A E EE+E+ + P S++E E DKDD+SLR
Sbjct: 1 MAEQEPTAEQLAQIAAENEEDEHS-----------VNYKPPAQKSIQEIQELDKDDESLR 49
Query: 88 RWKEKLLG--CVEGDLNGQMEPEVKFHSIGIISDDFGEITTPLPIDKNQNGHV------L 139
++KE LLG V D N P V + ++ T P P++ + G +
Sbjct: 50 KYKEALLGRVAVSADPNV---PNVIVTRLTLVCS-----TAPGPLELDLTGDLESFKKQS 101
Query: 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLE 199
F LKEG +++K++F V IVSG+ Y ++ G+++D++ M+G++ P+ E Y
Sbjct: 102 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 161
Query: 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
E P G+LARG Y+ K +F DDD+ H+ ++ IKK
Sbjct: 162 MEEAPKGMLARGSYNIKSRFTDDDKTDHLSWEWNLTIKK 200
>sp|O14224|GDIR_SCHPO Rho GDP-dissociation inhibitor OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC6F12.06 PE=1 SV=1
Length = 205
Score = 104 bits (259), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 95/189 (50%), Gaps = 20/189 (10%)
Query: 65 FSPGPLVSLKEQ------IEKDKDDDSLRRWKEKLLGCVEGDLNGQMEPEVKFHSIGIIS 118
F GP VSL E+ ++ D +D+SL++WK L G V + ++
Sbjct: 21 FEHGPPVSLGEKKSLNEYMKMDAEDESLQKWKASLGITGTGYSPSNDRRTVVILKLSLLV 80
Query: 119 DDFGEITTPLPIDKNQNGHVL--------FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTV 170
D P+D N FT+KEGS F++ + F V H ++SGL Y TV
Sbjct: 81 DGRD------PVDVNMEDAASVEQIRKKGFTIKEGSEFKIGVKFRVQHEVISGLRYVQTV 134
Query: 171 WKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMEL 230
+ G VD++ M+G++ P PY T E + P+G+LARG Y A KF DDD+ H E
Sbjct: 135 RRRGFVVDKTSTMIGSYGPSETPYDFTSEPDEAPTGMLARGHYEANGKFVDDDKVVHHEF 194
Query: 231 NYSFEIKKS 239
++F++ KS
Sbjct: 195 VWAFDVAKS 203
>sp|P52566|GDIR2_HUMAN Rho GDP-dissociation inhibitor 2 OS=Homo sapiens GN=ARHGDIB PE=1
SV=3
Length = 201
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 96/177 (54%), Gaps = 4/177 (2%)
Query: 64 GFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDL-NGQMEPEVKFHSIGIISDDF- 121
+ P P SLKE E DKDD+SL ++K+ LLG +G + P V + ++ +
Sbjct: 23 NYKPPPQKSLKELQEMDKDDESLIKYKKTLLG--DGPVVTDPKAPNVVVTRLTLVCESAP 80
Query: 122 GEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSK 181
G IT L D LKEGS +++K+ F V +IVSGL Y ++ G++VD++
Sbjct: 81 GPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKAT 140
Query: 182 GMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
M+G++ P+ E Y E P G+LARG Y K F DDD++ H+ ++ IKK
Sbjct: 141 FMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKK 197
>sp|Q62160|GDIR3_MOUSE Rho GDP-dissociation inhibitor 3 OS=Mus musculus GN=Arhgdig PE=2
SV=1
Length = 225
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 105/201 (52%), Gaps = 5/201 (2%)
Query: 37 SEVLLADEEEEEEYDDEDVKEGDGVVAGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGC 96
+ VLLAD++ E DE + E +V + S+ + D D SL ++K+ LLG
Sbjct: 23 ARVLLADKDGESTPSDEVLDE---IVPEYQAPGKKSMLAIWQLDPGDVSLVKYKQALLGP 79
Query: 97 VEGDLNGQMEPEVKFHSIGIISDDF-GEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFN 155
+ ++ + P V+ + ++++ G I L D + + +F LKEG +++K+TF
Sbjct: 80 LPPIMDPSL-PNVQVTRLTLLTEQAPGPIIMDLTGDLDALKNQVFVLKEGIEYKVKITFK 138
Query: 156 VMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSA 215
V IVSGL + ++ GL+VD++ M+G++ P+ + Y E P G LARGLY
Sbjct: 139 VNKEIVSGLKCLHHTYRRGLRVDKAIFMVGSYGPRAQEYEFVTSVEEAPRGALARGLYVV 198
Query: 216 KLKFEDDDRRCHMELNYSFEI 236
+ F DDDR H+ + +
Sbjct: 199 RSLFTDDDRLNHLSWEWHLHV 219
>sp|Q0II80|GDIR3_BOVIN Rho GDP-dissociation inhibitor 3 OS=Bos taurus GN=ARHGDIG PE=2 SV=1
Length = 225
Score = 91.3 bits (225), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 103/210 (49%), Gaps = 23/210 (10%)
Query: 37 SEVLLADEE----EEEEYDDEDVKEGDGVVAGFSPGPLVSLKEQIEKDKDDDSLRRWKEK 92
+ VLL D+E EE DE V E +PG SL E + D DD+SL ++K
Sbjct: 23 ARVLLTDKEGGQLPPEEALDEAVPEYR------APGK-KSLLEIQQLDPDDESLVKYKRA 75
Query: 93 LLGCVEGDLNGQMEPEVKFHSIGIISDDFGEITTPLPIDKNQNGHV------LFTLKEGS 146
LLG V ++ + P V+ + +IS+ P PI + G + +F LKEG
Sbjct: 76 LLGPVLPAVDPSL-PNVQVTRLTLISEQ-----APGPIVMDLTGELAALKNQVFVLKEGV 129
Query: 147 RFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSG 206
+++K+TF V IVSGL + ++ GL+VD++ M+G++ P + Y E P G
Sbjct: 130 DYKVKITFKVNKEIVSGLKCLHHTYRHGLRVDKAVYMVGSYGPSAQEYEFVTPVEEAPRG 189
Query: 207 VLARGLYSAKLKFEDDDRRCHMELNYSFEI 236
L RG Y F DDDR H+ + +
Sbjct: 190 ALVRGAYVVTSFFTDDDRTAHLSWEWGLYV 219
>sp|Q12434|GDIR_YEAST Rho GDP-dissociation inhibitor OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RDI1 PE=1 SV=1
Length = 202
Score = 87.4 bits (215), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 88/167 (52%), Gaps = 8/167 (4%)
Query: 80 DKDDDSLRRWKEKL---LGCVEGDLNGQMEPEVKFHSIGIISDDFGEITTPLPIDKN--Q 134
D +D+SL +WKE L + + G V +++ + IT L +K +
Sbjct: 35 DAEDESLAKWKESLGLSSDVLPLEFPGDKRKVVVQKIQLLVNTEPNPITFDLTNEKTIKE 94
Query: 135 NGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAP--QRE 192
+ +KE S ++LK+ F V H I++GL Y + KAG+ VD+ LG++AP + +
Sbjct: 95 LASKRYKIKENSIYKLKIVFKVQHEIITGLRYVQYIKKAGIAVDKIDDHLGSYAPNTKTK 154
Query: 193 PYVHT-LEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
P+ L E PSG LARG YSA KF DDD+ H+ LN+ EI K
Sbjct: 155 PFYEVELPESEAPSGFLARGNYSAVSKFIDDDKTNHLTLNWGVEIVK 201
>sp|Q99819|GDIR3_HUMAN Rho GDP-dissociation inhibitor 3 OS=Homo sapiens GN=ARHGDIG PE=2
SV=2
Length = 225
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 13/205 (6%)
Query: 37 SEVLLADEEEEEEYDDEDVKEGDGVVAGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGC 96
+ VLLAD+E DE + E V +PG SL E + D DD SL ++K LLG
Sbjct: 23 ARVLLADKEGGPPAVDEVLDEA--VPEYRAPG-RKSLLEIRQLDPDDRSLAKYKRVLLGP 79
Query: 97 VEGDLNGQMEPEVKFHSIGIISDD-----FGEITTPLPIDKNQNGHVLFTLKEGSRFQLK 151
+ ++ + P V+ + ++S+ ++T L + K+Q +F LKEG +++K
Sbjct: 80 LPPAVDPSL-PNVQVTRLTLLSEQAPGPVVMDLTGDLAVLKDQ----VFVLKEGVDYRVK 134
Query: 152 LTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARG 211
++F V IVSGL + ++ GL+VD++ M+G++ P + Y E P G L RG
Sbjct: 135 ISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQEYEFVTPVEEAPRGALVRG 194
Query: 212 LYSAKLKFEDDDRRCHMELNYSFEI 236
Y F DDDR H+ + I
Sbjct: 195 PYLVVSLFTDDDRTHHLSWEWGLCI 219
>sp|Q20496|GDIR_CAEEL Probable rho GDP-dissociation inhibitor OS=Caenorhabditis elegans
GN=rhi-1 PE=2 SV=1
Length = 191
Score = 84.0 bits (206), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 90/173 (52%), Gaps = 5/173 (2%)
Query: 69 PLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQMEPEVKFHSIGIISDDFGEITTPL 128
P S+ E + DK+D+SL+ +K KLLG ++ + V S+ ++ + G+
Sbjct: 20 PQKSIDELLNADKEDESLKVYKAKLLGQGTVIVDEKNPLRVIVRSVELLIN--GKTAQSF 77
Query: 129 PID---KNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLG 185
+ K N + ++KEGS ++L F+V I SGL Y + V ++G+ V+ K M+G
Sbjct: 78 DLSDPAKLVNSDLSVSIKEGSNYRLSFAFHVQREITSGLHYKHKVKRSGITVENEKYMMG 137
Query: 186 TFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238
++AP+ E + E PSG++ RG Y K DDD +++ ++ I K
Sbjct: 138 SYAPKLEIQEYKSPNEEAPSGMMHRGKYKVYSKITDDDNNVYLDWQWTLHITK 190
>sp|P80237|GDIR1_CAVPO Rho GDP-dissociation inhibitor 1 (Fragments) OS=Cavia porcellus
GN=ARHGDIA PE=1 SV=1
Length = 111
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 33/143 (23%)
Query: 96 CVEGDLNGQMEPEVKFHSIGIISDDFGEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFN 155
V D N EP V + ++ T P P++ + G + F++K++F
Sbjct: 2 AVSADPN---EPNVIVTRLTLVCS-----TAPGPLELDLTGDL-------ESFKIKISFR 46
Query: 156 VMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSA 215
Y ++ G+++D++ M+G++ P+ E Y E P G+LAR
Sbjct: 47 ----------YIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLAR----- 91
Query: 216 KLKFEDDDRRCHMELNYSFEIKK 238
F DDD+ H+ + IKK
Sbjct: 92 ---FTDDDKTDHLSGERNLTIKK 111
>sp|Q25BI3|DPOL_HIS1I DNA polymerase OS=His1 virus (isolate Australia/Victoria) PE=3 SV=1
Length = 717
Score = 35.0 bits (79), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 8 EAGPSRGVVNAEEKKDKQREMKTEKPLTISEVLLADEE 45
EA +G+VNA EK + E+++ +P TISE++ ++EE
Sbjct: 635 EADLEKGLVNAAEKANGHIEIESTRPQTISEIIWSNEE 672
>sp|Q8XPD7|Y026_CLOPE DegV domain-containing protein CPE0026 OS=Clostridium perfringens
(strain 13 / Type A) GN=CPE0026 PE=4 SV=1
Length = 291
Score = 33.9 bits (76), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 35 TISEVLLADEEEEEEYDDEDVKEGDGVVAGFSPGPLVSLKEQIEKD-KDDDSLRRWKE 91
T + L+A EE E+Y D D+K D A G LV Q++KD K D + W E
Sbjct: 97 TYNSSLIAREELLEKYPDADIKIVDTRAACLGQGLLVYYAAQMKKDGKSIDEIYSWVE 154
>sp|Q11QA6|RPOC_CYTH3 DNA-directed RNA polymerase subunit beta' OS=Cytophaga hutchinsonii
(strain ATCC 33406 / NCIMB 9469) GN=rpoC PE=3 SV=1
Length = 1438
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Query: 88 RWKEKLLGCVEGDLNGQ----MEPEVKFHSIGIISDDFGEITTPLPIDKNQNGHVLFTLK 143
R+++ LLG D +G+ + PE+K H G+ D E+ P I K ++ T+K
Sbjct: 351 RFRQNLLGK-RVDYSGRSVIVVGPELKMHECGLPKDMAAELFKPFIIRKLIERGIVKTVK 409
Query: 144 EGSRFQLK---LTFNVMHNIVSG----LTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVH 196
+ + + ++++ N++ G L + T+ + G+Q Q K + G A Q P V
Sbjct: 410 SAKKIVDRKDPVVWDILENVLKGHPILLNRAPTLHRLGIQAFQPKLIEGK-AIQLHPLVC 468
Query: 197 T 197
T
Sbjct: 469 T 469
>sp|B7GG75|IF2_ANOFW Translation initiation factor IF-2 OS=Anoxybacillus flavithermus
(strain DSM 21510 / WK1) GN=infB PE=3 SV=1
Length = 723
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 49 EYDDEDVKEGDGVVAGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQMEPE 108
EYD + +V GF+ P + K E +K D L R K++ +E + G ++PE
Sbjct: 565 EYDIMLASASNAIVIGFNVRPDANAKRVAEAEKVDIRLHRIIYKVIEEIEAAMKGMLDPE 624
Query: 109 VKFHSIG 115
+ IG
Sbjct: 625 YEEKVIG 631
>sp|Q56XP9|ERFL1_ARATH Ethylene-responsive transcription factor-like protein At4g13040
OS=Arabidopsis thaliana GN=At4g13040 PE=2 SV=2
Length = 226
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 157 MHN----IVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQRE 192
+HN ++ G+ Y N W+A ++V++ + LGTF+ Q E
Sbjct: 109 VHNQEPCLMRGVYYKNMKWQAAIKVEKKQIHLGTFSSQEE 148
>sp|Q1WUF4|IF2_LACS1 Translation initiation factor IF-2 OS=Lactobacillus salivarius
(strain UCC118) GN=infB PE=3 SV=1
Length = 737
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 59 DGVVAGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQMEPE 108
+ ++ GF+ P K+Q E D D L R K + +E + G +EPE
Sbjct: 589 NAIIVGFNVRPTPLAKQQAESDNVDIRLHRVIYKAIDEIETAMKGMLEPE 638
>sp|A8F4X2|MURC_THELT UDP-N-acetylmuramate--L-alanine ligase OS=Thermotoga lettingae
(strain ATCC BAA-301 / DSM 14385 / TMO) GN=murC PE=3
SV=1
Length = 445
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 130 IDKNQNGHVLFTLKE--GSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTF 187
ID+N+NG F E G + L L HNI++ + +W AG +V++ L F
Sbjct: 235 IDRNRNGLFQFAKIEINGKEYNLTLKVPGEHNILNAMAVITLLWSAGHEVEEVLKALEDF 294
Query: 188 APQREPYVHTLEEE 201
+ T+ +E
Sbjct: 295 TGTYRRFTVTVIDE 308
>sp|A5FIJ4|RPOC_FLAJ1 DNA-directed RNA polymerase subunit beta' OS=Flavobacterium
johnsoniae (strain ATCC 17061 / DSM 2064 / UW101)
GN=rpoC PE=3 SV=1
Length = 1436
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 17/129 (13%)
Query: 84 DSLR----RWKEKLLGCVEGDLNGQ----MEPEVKFHSIGIISDDFGEITTPLPIDKNQN 135
DSL+ R+++ LLG D + + + PE+K + G+ D E+ P I K
Sbjct: 350 DSLKGKQGRFRQNLLGK-RVDYSARSVIVVGPELKLYECGLPKDMASELYKPFVIRKLIE 408
Query: 136 GHVLFTLKEGSRFQLK---LTFNVMHNIVSG----LTYSNTVWKAGLQVDQSKGMLGTFA 188
++ T+K + K + ++++ N++ G L + T+ + G+Q Q K + G A
Sbjct: 409 RGIVKTVKSAKKIIDKKEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGK-A 467
Query: 189 PQREPYVHT 197
Q P V T
Sbjct: 468 IQLHPLVCT 476
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,870,247
Number of Sequences: 539616
Number of extensions: 4805274
Number of successful extensions: 23907
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 230
Number of HSP's that attempted gapping in prelim test: 21976
Number of HSP's gapped (non-prelim): 1380
length of query: 240
length of database: 191,569,459
effective HSP length: 114
effective length of query: 126
effective length of database: 130,053,235
effective search space: 16386707610
effective search space used: 16386707610
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)