Query 026326
Match_columns 240
No_of_seqs 131 out of 278
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 06:34:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026326.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026326hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3205 Rho GDP-dissociation i 100.0 1.8E-79 4E-84 528.9 21.3 174 65-240 24-199 (200)
2 PF02115 Rho_GDI: RHO protein 100.0 9.7E-78 2.1E-82 523.9 16.9 175 63-239 25-200 (200)
3 PF02221 E1_DerP2_DerF2: ML do 96.1 0.2 4.4E-06 39.4 12.0 93 139-236 25-134 (134)
4 cd00917 PG-PI_TP The phosphati 94.2 0.83 1.8E-05 36.7 10.4 85 142-228 24-116 (122)
5 smart00737 ML Domain involved 92.1 2.3 5E-05 33.2 9.8 82 142-227 21-111 (118)
6 cd00258 GM2-AP GM2 activator p 90.2 4.8 0.0001 35.0 10.7 39 197-237 122-160 (162)
7 PF11797 DUF3324: Protein of u 88.9 5.1 0.00011 33.0 9.6 84 149-238 43-131 (140)
8 cd00912 ML The ML (MD-2-relate 77.8 31 0.00067 27.4 9.4 87 139-227 23-120 (127)
9 PF04234 CopC: CopC domain; I 74.0 27 0.00058 26.8 7.9 76 150-237 22-97 (97)
10 cd00915 MD-1_MD-2 MD-1 and MD- 72.1 51 0.0011 27.6 9.6 85 139-230 28-126 (130)
11 PF15432 Sec-ASP3: Accessory S 67.1 17 0.00036 30.4 5.7 77 141-237 49-125 (128)
12 KOG4680 Uncharacterized conser 66.9 85 0.0018 27.2 10.7 81 150-237 58-145 (153)
13 PF14524 Wzt_C: Wzt C-terminal 66.5 56 0.0012 25.1 8.3 96 106-221 10-109 (142)
14 COG2372 CopC Uncharacterized p 61.8 25 0.00054 29.6 5.8 77 151-238 50-126 (127)
15 cd00916 Npc2_like Niemann-Pick 47.7 1.5E+02 0.0032 23.9 10.1 83 139-227 23-116 (123)
16 PF00379 Chitin_bind_4: Insect 45.4 45 0.00097 22.8 4.1 29 200-233 18-46 (52)
17 PF09026 CENP-B_dimeris: Centr 44.8 7 0.00015 31.7 -0.1 6 60-65 41-46 (101)
18 PF05351 GMP_PDE_delta: GMP-PD 44.2 48 0.001 28.8 4.9 79 147-226 62-147 (157)
19 TIGR03711 acc_sec_asp3 accesso 43.8 63 0.0014 27.4 5.4 54 140-201 59-112 (135)
20 PF04379 DUF525: Protein of un 34.2 1.7E+02 0.0036 22.8 6.1 33 181-215 50-86 (90)
21 PF15043 CNRIP1: CB1 cannabino 33.6 2.1E+02 0.0044 25.1 7.1 49 107-156 5-54 (161)
22 PHA00407 phage lambda Rz1-like 33.1 15 0.00033 28.7 0.1 12 85-96 27-38 (84)
23 PF13752 DUF4165: Domain of un 32.2 72 0.0016 26.8 4.0 30 208-237 91-120 (124)
24 COG3241 Azurin [Energy product 31.3 75 0.0016 27.2 4.0 49 102-161 95-143 (151)
25 PF02494 HYR: HYR domain; Int 30.9 1.4E+02 0.0029 21.8 5.0 31 202-233 48-78 (81)
26 cd01759 PLAT_PL PLAT/LH2 domai 30.1 85 0.0018 25.5 4.0 43 147-191 2-44 (113)
27 PRK10301 hypothetical protein; 29.3 57 0.0012 26.6 2.9 30 207-237 95-124 (124)
28 PRK13211 N-acetylglucosamine-b 28.9 6.2E+02 0.014 25.6 11.6 84 139-237 321-405 (478)
29 PF10651 DUF2479: Domain of un 27.4 67 0.0015 27.1 3.1 41 193-239 83-126 (170)
30 smart00700 JHBP Juvenile hormo 27.3 4.1E+02 0.0088 22.9 8.9 10 84-93 21-30 (225)
31 cd07816 Bet_v1-like Ligand-bin 27.3 1.3E+02 0.0028 24.5 4.7 28 210-237 92-120 (148)
32 PF11687 DUF3284: Domain of un 26.9 2.1E+02 0.0044 23.0 5.7 61 162-235 40-101 (120)
33 KOG4063 Major epididymal secre 23.8 5E+02 0.011 22.8 10.2 95 139-238 49-158 (158)
34 cd00237 p23 p23 binds heat sho 22.4 2.1E+02 0.0046 22.6 5.0 39 112-155 13-53 (106)
35 PF04787 Pox_H7: Late protein 22.3 72 0.0016 27.5 2.4 24 209-232 29-53 (147)
36 PF06155 DUF971: Protein of un 20.4 22 0.00047 26.9 -1.1 39 194-232 49-87 (89)
37 COG2967 ApaG Uncharacterized p 20.1 1.5E+02 0.0032 25.0 3.7 31 192-227 79-110 (126)
No 1
>KOG3205 consensus Rho GDP-dissociation inhibitor [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-79 Score=528.94 Aligned_cols=174 Identities=47% Similarity=0.794 Sum_probs=169.4
Q ss_pred ccCCcccChHHHHhcCCCchhHHHHHhhhCCCcCCCCCCCCCCcEEEEEEEEEeCCCCceEeeCCCCCCC--CCceeEEe
Q 026326 65 FSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQMEPEVKFHSIGIISDDFGEITTPLPIDKNQ--NGHVLFTL 142 (240)
Q Consensus 65 yk~g~~ksl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~p~V~i~~L~L~~egr~~i~~~L~~~~~~--k~~~~f~I 142 (240)
|++||+|||+||+++|+|||||||||++|||.++ .+.++++|+|+|.+|+|+|+||||++++|+++.+. +++ .|+|
T Consensus 24 yk~~p~ksl~E~~~~DkdDESL~kwKe~Llg~~~-~~~~~~dp~VvV~~LtLl~~~r~pi~ldlt~~~~~~~k~~-~f~i 101 (200)
T KOG3205|consen 24 YKLPPQKSLKEILELDKDDESLRKWKEQLLGSVD-VIVDPNDPRVVVLKLTLLSEGRPPIVLDLTGDLSPELKKQ-WFTI 101 (200)
T ss_pred cCCCchhhHHHHHhcCcchHHHHHHHHHhCCCCC-cccCCCCCeEEEEEEEEEeCCCCCeEEeCCCCccccccCc-eEEe
Confidence 9999999999999999999999999999999887 57789999999999999999999999999988754 776 9999
Q ss_pred ccCCeEEEEEEEEEeceeeecceeEEEEEEcceEeecccccccccCCCCCCeeEecCCCCCCceeeeeeeeeeeEEEEeC
Q 026326 143 KEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDD 222 (240)
Q Consensus 143 KEGs~Y~i~i~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~mlGSY~P~~e~Y~~~fp~EeAPSGmLaRG~Y~akSkFvDD 222 (240)
|||+.|+|+|+|+|||+|||||||+|+|||.||+||++..|||||+|++++|+|.+|+|||||||||||+|+|+|+|+||
T Consensus 102 KEGs~Y~lki~F~Vq~eIvSGLrY~q~v~r~Gv~VDk~~~MlGSy~P~~e~ye~~~p~eeAPsGmlaRG~Ys~~skF~DD 181 (200)
T KOG3205|consen 102 KEGSEYRLKISFRVQREIVSGLRYVQTVYRTGVKVDKTKYMLGSYGPQAEPYEFVTPEEEAPSGMLARGSYSAKSKFTDD 181 (200)
T ss_pred ecCcEEEEEEEEEEeeheeccceeeeEEeecceEEeehhhhcccCCCCCcceeeeCCcccCCccceeecceeeeeEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEEeEEEeecC
Q 026326 223 DRRCHMELNYSFEIKKSR 240 (240)
Q Consensus 223 Dk~~hL~~eWsfeI~Kd~ 240 (240)
|++|||+|+|+|+|+|+|
T Consensus 182 Dk~~hLe~~w~~~I~K~W 199 (200)
T KOG3205|consen 182 DKTCHLEWNWTFDIKKEW 199 (200)
T ss_pred CCceEEEEEEEEEEeecc
Confidence 999999999999999998
No 2
>PF02115 Rho_GDI: RHO protein GDP dissociation inhibitor; InterPro: IPR000406 The GDP dissociation inhibitor for rho proteins, rho GDI, regulates GDP/GTP exchange by inhibiting the dissociation of GDP from them. The protein contains 204 amino acids, with a calculated Mr value of 23,421. Hydropathy analysis shows it to be largely hydrophilic, with a single hydrophobic region. Results of database searches suggest rho GDI is a novel protein, currently with no known homologue. The protein plays an important role in the activation of the superoxide (O2-)-generating NADPH oxidase of phagocytes. This process requires the interaction of membrane-associated cytochrome b559 with 3 cytosolic components: p47-phox, p67-phox and a heterodimer of the small G-protein p21rac1 and rho GDI []. The association of p21rac and GDI inhibits dissociation of GDP from p21rac, thereby maintaining it in an inactive form. The proteins are attached via a lipid tail on p21rac that binds to the hydrophobic region of GDI []. Dissociation of these proteins might be mediated by the release of lipids (e.g., arachidonate and phosphatidate) from membranes through the action of phospholipases []. The lipids may then compete with the lipid tail on p21rac for the hydrophobic pocket on GDI.; GO: 0005094 Rho GDP-dissociation inhibitor activity, 0005737 cytoplasm; PDB: 2JHV_A 2JHU_A 2JI0_A 2JHS_A 1RHO_A 2JHW_A 1FT3_A 2JHZ_B 1QVY_C 1FST_B ....
Probab=100.00 E-value=9.7e-78 Score=523.91 Aligned_cols=175 Identities=47% Similarity=0.792 Sum_probs=144.6
Q ss_pred ccccCCcccChHHHHhcCCCchhHHHHHhhhCCCcCCCCCCCCCCcEEEEEEEEEeCCCCceEeeCCCCC-CCCCceeEE
Q 026326 63 AGFSPGPLVSLKEQIEKDKDDDSLRRWKEKLLGCVEGDLNGQMEPEVKFHSIGIISDDFGEITTPLPIDK-NQNGHVLFT 141 (240)
Q Consensus 63 ~~yk~g~~ksl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~p~V~i~~L~L~~egr~~i~~~L~~~~-~~k~~~~f~ 141 (240)
++|++|++|||+||++||++||||||||+||||.++ .++++++|+|+|++|+|+|+|||||+++|+++. .++++ +|+
T Consensus 25 ~~yk~~~~ksl~e~~~lD~eDESL~k~Ke~LLG~~~-~~~d~~~p~V~v~~l~l~~eg~p~i~ldl~~~~~~~k~~-~f~ 102 (200)
T PF02115_consen 25 PGYKPPPKKSLKEIQELDKEDESLRKWKESLLGSAD-VIGDPNDPKVIVKSLTLVVEGRPPIVLDLTGDLEDLKKK-PFT 102 (200)
T ss_dssp ----------HHHHHHTTTT-HHHHHHHHHHH-SS---SS-STS-SEEEEEEEEEETTSS-EEEETTS-GGGGGGS-EEE
T ss_pred cccCCCccCCHHHHHhcCcCcHHHHHHHHhhcCCCc-ccCCCCCCeEEEEEEEEEcCCCCCeeeeccCccccccCC-cEE
Confidence 459999999999999999999999999999999876 577888999999999999999999999999885 46776 999
Q ss_pred eccCCeEEEEEEEEEeceeeecceeEEEEEEcceEeecccccccccCCCCCCeeEecCCCCCCceeeeeeeeeeeEEEEe
Q 026326 142 LKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFED 221 (240)
Q Consensus 142 IKEGs~Y~i~i~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~mlGSY~P~~e~Y~~~fp~EeAPSGmLaRG~Y~akSkFvD 221 (240)
|||||+|+|+|+|+|||+||+||||+|+|||+||+|++++.|||||+|++++|+|+||+++|||||||||+|+|+|+|+|
T Consensus 103 IKEGs~Y~l~i~F~V~~~ivsGL~Y~q~Vkr~Gi~Vdk~~~miGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~aks~f~D 182 (200)
T PF02115_consen 103 IKEGSKYRLKITFKVQHEIVSGLKYVQTVKRKGIPVDKREEMIGSYAPQTEPYEKTFPEEEAPSGMLARGSYTAKSKFVD 182 (200)
T ss_dssp EETT-EEEEEEEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEEEEE--ESSEEEEEEEEEE--BSTTT-EEEEEEEEEEE
T ss_pred ccCCCEEEEEEEEEECCccccCcEEEEEEEECCEeEcccceeeeccCCCCcceEEeCcCccCCCceeEeeeeeEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEEeEEEeec
Q 026326 222 DDRRCHMELNYSFEIKKS 239 (240)
Q Consensus 222 DDk~~hL~~eWsfeI~Kd 239 (240)
||+++||+|+|+|+|+||
T Consensus 183 dD~~~~l~~~w~feI~Kd 200 (200)
T PF02115_consen 183 DDKNVHLEWEWSFEIKKD 200 (200)
T ss_dssp TTSSECEEEEEEEEEESS
T ss_pred CCCcEEEEEEEEEEEecC
Confidence 999999999999999996
No 3
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=96.06 E-value=0.2 Score=39.38 Aligned_cols=93 Identities=19% Similarity=0.319 Sum_probs=64.7
Q ss_pred eEEeccCCeEEEEEEEEEeceeeecceeEEEEEEcc-eEeecc----c-ccccc---cC---CCC-C---CeeEecC-CC
Q 026326 139 LFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAG-LQVDQS----K-GMLGT---FA---PQR-E---PYVHTLE-EE 201 (240)
Q Consensus 139 ~f~IKEGs~Y~i~i~FkVq~eIVsGLkY~q~VkR~G-I~Vdk~----e-~mlGS---Y~---P~~-e---~Y~~~fp-~E 201 (240)
+-.++-|..++|.+.|.+.+...++++..-.++-.| ++|--. . ..-.. .. |-. . .|++.++ +.
T Consensus 25 pC~~~~g~~~~i~~~f~~~~~~~~~~~~~v~~~~~g~~~ip~~g~~~~~d~C~~~~~~~~~CPi~~G~~~~~~~~~~i~~ 104 (134)
T PF02221_consen 25 PCPLKRGQPVTITIDFNTSKKDSDGLKVKVEAKVGGWIPIPFPGLCEYYDLCDNLFGNGLSCPIKAGEYYTYTYTIPIPK 104 (134)
T ss_dssp SEEEETTSEEEEEEEEEECSSBBSSEEEEEEEEETTEEEEEEESSSCEEEEEGTSCCSSTTSTBTTTEEEEEEEEEEEST
T ss_pred CCcccCCCEEEEEEEEEEccccccCCEEEEEEEECCcEEEccccccCccchhhhcccccccCccCCCcEEEEEEEEEccc
Confidence 566899999999999999999999999877778887 877554 1 22221 11 222 1 2344443 34
Q ss_pred CCCceeeeeeeeeeeEEEEeCCCceEEEEEEeEEE
Q 026326 202 TTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEI 236 (240)
Q Consensus 202 eAPSGmLaRG~Y~akSkFvDDDk~~hL~~eWsfeI 236 (240)
..| .|+|+++.+++|+++...+=++-.++|
T Consensus 105 ~~p-----~~~~~i~~~l~d~~~~~i~C~~~~v~I 134 (134)
T PF02221_consen 105 IYP-----PGKYTIQWKLTDQDGEEIACFEFPVKI 134 (134)
T ss_dssp TSS-----SEEEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred cee-----eEEEEEEEEEEeCCCCEEEEEEEEeEC
Confidence 444 459999999999998777666666655
No 4
>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure. These proteins belong to the ML domain family.
Probab=94.19 E-value=0.83 Score=36.68 Aligned_cols=85 Identities=14% Similarity=0.076 Sum_probs=56.6
Q ss_pred eccCCeEEEEEEEEEeceeeecceeEEEEEEcceEeecccc-c---c---cccCCCC-CCeeEecCCCCCCceeeeeeee
Q 026326 142 LKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKG-M---L---GTFAPQR-EPYVHTLEEETTPSGVLARGLY 213 (240)
Q Consensus 142 IKEGs~Y~i~i~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~-m---l---GSY~P~~-e~Y~~~fp~EeAPSGmLaRG~Y 213 (240)
++.|...+|.+.|....++-+|++-.=.++-.||++-.... . + |--=|=. ..+.+.. .-+-| .++-.|+|
T Consensus 24 ~~~G~~~ti~~~~~~~~~v~~g~~~~v~~~~~~i~~~~~~~DlC~~~~~~g~~CPi~~G~~~~~~-~~~ip-~~~P~g~y 101 (122)
T cd00917 24 PAAGQNLTIEASGSVGKEIEDGAYVVVEVKYGFIRLLSETYDLCDETKNVDLSCPIEPGDKFLTK-LVDLP-GEIPPGKY 101 (122)
T ss_pred cCCCCcEEEEEEEEECcCcCCCCEEEEEEEECCEEeecccCCcccccccCCCcCCcCCCcEEEEE-EeeCC-CCCCCceE
Confidence 77889999999999998888887766678888988764433 1 1 2111221 2222222 13444 45566899
Q ss_pred eeeEEEEeCCCceEE
Q 026326 214 SAKLKFEDDDRRCHM 228 (240)
Q Consensus 214 ~akSkFvDDDk~~hL 228 (240)
+++.++.|+|++...
T Consensus 102 ~v~~~l~d~~~~~i~ 116 (122)
T cd00917 102 TVSARAYTKDDEEIT 116 (122)
T ss_pred EEEEEEECCCCCEEE
Confidence 999999998777653
No 5
>smart00737 ML Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
Probab=92.09 E-value=2.3 Score=33.18 Aligned_cols=82 Identities=22% Similarity=0.348 Sum_probs=50.1
Q ss_pred eccCCeEEEEEEEEEeceeeecceeEEEEEE-cc--eEeecccc-c---ccccCCCC--CCeeEecCCCCCCceeeeeee
Q 026326 142 LKEGSRFQLKLTFNVMHNIVSGLTYSNTVWK-AG--LQVDQSKG-M---LGTFAPQR--EPYVHTLEEETTPSGVLARGL 212 (240)
Q Consensus 142 IKEGs~Y~i~i~FkVq~eIVsGLkY~q~VkR-~G--I~Vdk~e~-m---lGSY~P~~--e~Y~~~fp~EeAPSGmLaRG~ 212 (240)
++-|...+|.+.|...+++-+ |+ +++..+ .| |++-.... . +|..=|-. +.|.|.+.- ..|+ .+-+|+
T Consensus 21 ~~~g~~~~i~i~f~~~~~~~~-~~-~~v~~~~~g~~ip~~~~~~d~C~~~~~~CPl~~G~~~~~~~~~-~v~~-~~P~~~ 96 (118)
T smart00737 21 PVRGKTLTISISFTLNEDISK-LK-VVVHVKIGGIEVPIPGETYDLCKLLGSKCPIEKGETVNYTNSL-TVPG-IFPPGK 96 (118)
T ss_pred CCCCCEEEEEEEEEEcccceE-EE-EEEEEEECCEEEeccCCCCCccccCCCCCCCCCCeeEEEEEee-Eccc-cCCCeE
Confidence 477899999999999888755 54 444444 44 55543222 1 24333443 233333321 1232 555789
Q ss_pred eeeeEEEEeCCCceE
Q 026326 213 YSAKLKFEDDDRRCH 227 (240)
Q Consensus 213 Y~akSkFvDDDk~~h 227 (240)
|+++..++|+|+...
T Consensus 97 ~~v~~~l~d~~~~~i 111 (118)
T smart00737 97 YTVKWELTDEDGEEL 111 (118)
T ss_pred EEEEEEEEcCCCCEE
Confidence 999999999887765
No 6
>cd00258 GM2-AP GM2 activator protein (GM2-AP) is a non-enzymatic lysosomal protein that acts as cofactor in the sequential degradation of gangliosides. GM2A is an essential cofactor for beta-hexosaminidase A (Hex A) in the enzymatic hydrolysis of GM2 ganglioside to GM3. Mutation of the gene results in the AB variant of Tay-Sachs disease. GM2-AP and similar proteins belong to the ML domain family.
Probab=90.22 E-value=4.8 Score=35.04 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=28.7
Q ss_pred ecCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEeEEEe
Q 026326 197 TLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIK 237 (240)
Q Consensus 197 ~fp~EeAPSGmLaRG~Y~akSkFvDDDk~~hL~~eWsfeI~ 237 (240)
..|.-+-|+ ||.+|+|.++... +.+|+...=.+-+|.++
T Consensus 122 ~lP~~~LPs-~l~~G~Y~i~~~l-~~~g~~l~C~~~~~sL~ 160 (162)
T cd00258 122 TLPNVDLPS-WLTNGNYRITGIL-MADGKELGCGKFTFSLE 160 (162)
T ss_pred ecccccCCC-ccCCCcEEEEEEE-CCCCCEEEEEEEEEEEe
Confidence 555556684 9999999999966 77777766666666654
No 7
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=88.85 E-value=5.1 Score=33.04 Aligned_cols=84 Identities=19% Similarity=0.221 Sum_probs=57.5
Q ss_pred EEEEEEEEec---eeeecceeEEEEEEcce--EeecccccccccCCCCCCeeEecCCCCCCceeeeeeeeeeeEEEEeCC
Q 026326 149 QLKLTFNVMH---NIVSGLTYSNTVWKAGL--QVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDD 223 (240)
Q Consensus 149 ~i~i~FkVq~---eIVsGLkY~q~VkR~GI--~Vdk~e~mlGSY~P~~e~Y~~~fp~EeAPSGmLaRG~Y~akSkFvDDD 223 (240)
+-.|..+++| .+++.|+..-.|++.|= .+.+.+..-.+.||++. +.|..++..- -|.=|+|+++.+...++
T Consensus 43 ~~~i~~~l~N~~~~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~-f~~~i~~~~~---~lk~G~Y~l~~~~~~~~ 118 (140)
T PF11797_consen 43 RNVIQANLQNPQPAILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSN-FNFPIPLGGK---KLKPGKYTLKITAKSGK 118 (140)
T ss_pred eeEEEEEEECCCchhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCe-EEeEecCCCc---CccCCEEEEEEEEEcCC
Confidence 3344455544 48889999999988883 56666666779999875 5555555321 56669999999999987
Q ss_pred CceEEEEEEeEEEee
Q 026326 224 RRCHMELNYSFEIKK 238 (240)
Q Consensus 224 k~~hL~~eWsfeI~K 238 (240)
++ | .|+=.|.|..
T Consensus 119 ~~-W-~f~k~F~It~ 131 (140)
T PF11797_consen 119 KT-W-TFTKDFTITA 131 (140)
T ss_pred cE-E-EEEEEEEECH
Confidence 72 1 3444677754
No 8
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi. These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.
Probab=77.75 E-value=31 Score=27.42 Aligned_cols=87 Identities=17% Similarity=0.214 Sum_probs=57.9
Q ss_pred eEEeccCCeEEEEEEEEEeceeeecceeEEEEEEcceEeecc---ccc--c----cccCCCC--CCeeEecCCCCCCcee
Q 026326 139 LFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQS---KGM--L----GTFAPQR--EPYVHTLEEETTPSGV 207 (240)
Q Consensus 139 ~f~IKEGs~Y~i~i~FkVq~eIVsGLkY~q~VkR~GI~Vdk~---e~m--l----GSY~P~~--e~Y~~~fp~EeAPSGm 207 (240)
+=.++-|..++|.+.|..+.++ +.|+..=.++..||++-.. .-. . +..=|-. +.|+|..... -|+=+
T Consensus 23 pC~~~~g~~~~i~~~f~~~~~~-~~~~~~v~~~~~gi~~p~~~~~~d~C~~~~~~~~~CPl~~G~~~~~~~~~~-v~~~~ 100 (127)
T cd00912 23 PCPDHRGGNYNLSVTGTLREDI-KSLYVDLALMSQGIKVLNPDNSYDFCEAGLPKPSFCPLRKGQQYSYAKTVN-VPEFT 100 (127)
T ss_pred CCcccCCCeEEEEEEEEECccc-cEEEEEEEEEECCEEeccCCCCCCcccccCcccccCCcCCCCEEEEEEEEe-cCccc
Confidence 4568899999999999887765 5556666777789886542 212 1 3344543 2555554322 44335
Q ss_pred eeeeeeeeeEEEEeCCCceE
Q 026326 208 LARGLYSAKLKFEDDDRRCH 227 (240)
Q Consensus 208 LaRG~Y~akSkFvDDDk~~h 227 (240)
+.++.|.++..-+|+|+...
T Consensus 101 ~P~~~~~v~~~l~~~~~~~v 120 (127)
T cd00912 101 IPTIEYQVVLEDVTDKGEVL 120 (127)
T ss_pred CCCeeEEEEEEEEcCCCCEE
Confidence 67789999999999887754
No 9
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=74.03 E-value=27 Score=26.83 Aligned_cols=76 Identities=20% Similarity=0.292 Sum_probs=41.2
Q ss_pred EEEEEEEeceeeecceeEEEEEEcceEeecccccccccCCCCCCeeEecCCCCCCceeeeeeeeeeeEEEEeCCCceEEE
Q 026326 150 LKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHME 229 (240)
Q Consensus 150 i~i~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~mlGSY~P~~e~Y~~~fp~EeAPSGmLaRG~Y~akSkFvDDDk~~hL~ 229 (240)
|+|+| +..|-.++--+.++--.|-+|.....-+.. .....+..+|.. |+-|.|++.-+.+-.||+.- +
T Consensus 22 v~L~F--~e~v~~~~s~v~v~~~~g~~v~~~~~~~~~---~~~~~~~~l~~~------l~~G~YtV~wrvvs~DGH~~-~ 89 (97)
T PF04234_consen 22 VTLTF--SEPVEPGFSSVTVTDPDGKRVDLGEPTVDG---DGKTLTVPLPPP------LPPGTYTVSWRVVSADGHPV-S 89 (97)
T ss_dssp EEEEE--SS---CCC-EEEEEEEEETTSCTCEEEEEE---STTEEEEEESS---------SEEEEEEEEEEETTSCEE-E
T ss_pred EEEEe--CCCCccCccEEEEEcCCCceeecCcceecC---CceEEEEECCCC------CCCceEEEEEEEEecCCCCc-C
Confidence 45555 233333555566665555333322211111 123344433322 77799999999999999988 8
Q ss_pred EEEeEEEe
Q 026326 230 LNYSFEIK 237 (240)
Q Consensus 230 ~eWsfeI~ 237 (240)
=.|+|.|+
T Consensus 90 G~~~F~V~ 97 (97)
T PF04234_consen 90 GSFSFTVK 97 (97)
T ss_dssp EEEEEEE-
T ss_pred CEEEEEEC
Confidence 89999874
No 10
>cd00915 MD-1_MD-2 MD-1 and MD-2 are cofactors required for LPS signaling through cell surface receptors. MD-2 and its binding partner, Toll-like receptor 4 (TLR4), are essential for the innate immune responses of mammalian cells to bacterial lipopolysaccharide (LPS); MD-2 directly binds the lipid A moiety of LPS. The TLR4-like receptor, RP105, which mediates LPS-induced lymphocyte proliferation, interacts with MD-1; MD-1 enhances RP105-mediated LPS-induced growth of B cells. These proteins belong to the ML domain family.
Probab=72.13 E-value=51 Score=27.65 Aligned_cols=85 Identities=15% Similarity=0.246 Sum_probs=60.3
Q ss_pred eEEeccCCeEEEEEEEEEeceeeecceeEEEEEEcceEeeccccccc--------ccCCCC--CC--ee--EecCCCCCC
Q 026326 139 LFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLG--------TFAPQR--EP--YV--HTLEEETTP 204 (240)
Q Consensus 139 ~f~IKEGs~Y~i~i~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~mlG--------SY~P~~--e~--Y~--~~fp~EeAP 204 (240)
+=.++-|..+.|.+.|.-..+ +.-|+..=...=.|+++=...+. | ++=|.. +. |. +.+|...=|
T Consensus 28 pC~l~rg~n~~I~~~f~~~~d-~~~L~~~v~~~~~g~~lP~~~e~-~C~~g~~~~s~CP~~kGet~~Y~~p~slpi~~yP 105 (130)
T cd00915 28 PCSTLKGTNGFIRIKFILRRD-IKELYFNLSLNVNGIEVLTRSEI-ICHGYLDKYSFCGALKGETVYYVGPFSFKGILIP 105 (130)
T ss_pred cccceeCCcEEEEEEEEECcc-cceeEEEEEEEECCccCCCCCcc-cccCCCcccccCCccCCceEEEeeeecccccccC
Confidence 456888999999999998554 77888877778889655533333 5 666764 34 55 556655555
Q ss_pred ceeeeeeeeeeeEEEEeCCCceEEEE
Q 026326 205 SGVLARGLYSAKLKFEDDDRRCHMEL 230 (240)
Q Consensus 205 SGmLaRG~Y~akSkFvDDDk~~hL~~ 230 (240)
. |+|.++-..+|+++....=|
T Consensus 106 ~-----~~y~V~weL~d~~~~~l~Cf 126 (130)
T cd00915 106 Q-----GQYRCVAELIVENRETVACA 126 (130)
T ss_pred C-----ccEEEEEEEECCCCCEEEEE
Confidence 4 69999999999877665333
No 11
>PF15432 Sec-ASP3: Accessory Sec secretory system ASP3
Probab=67.07 E-value=17 Score=30.36 Aligned_cols=77 Identities=22% Similarity=0.368 Sum_probs=55.7
Q ss_pred EeccCCeEEEEEEEEEeceeeecceeEEEEEEcceEeecccccccccCCCCCCeeEecCCCCCCceeeeeeeeeeeEEEE
Q 026326 141 TLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFE 220 (240)
Q Consensus 141 ~IKEGs~Y~i~i~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~mlGSY~P~~e~Y~~~fp~EeAPSGmLaRG~Y~akSkFv 220 (240)
.||.|.+|+|++.+.++.+ +--|++++.- |+..+.|+..-=+...-+|+.|.+. |+-+..-+
T Consensus 49 lLk~G~~Y~l~~~~~~~P~---~svylki~F~-----dr~~e~i~~~i~k~~~~~F~yP~~a----------ysY~I~Li 110 (128)
T PF15432_consen 49 LLKRGHTYQLKFNIDVVPE---NSVYLKIIFF-----DRQGEEIEEQIIKNDSFEFTYPEEA----------YSYTISLI 110 (128)
T ss_pred EecCCCEEEEEEEEEEccC---CeEEEEEEEE-----ccCCCEeeEEEEecCceEEeCCCCc----------eEEEEEEe
Confidence 4899999999999999764 7778888876 7888888887777666777777653 44444555
Q ss_pred eCCCceEEEEEEeEEEe
Q 026326 221 DDDRRCHMELNYSFEIK 237 (240)
Q Consensus 221 DDDk~~hL~~eWsfeI~ 237 (240)
.. |..+|.|. .|.|.
T Consensus 111 na-G~~~l~F~-~i~I~ 125 (128)
T PF15432_consen 111 NA-GCQSLTFH-SIEIS 125 (128)
T ss_pred eC-CCCeeEEe-EEEEE
Confidence 54 55555654 56554
No 12
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]
Probab=66.93 E-value=85 Score=27.20 Aligned_cols=81 Identities=21% Similarity=0.254 Sum_probs=54.3
Q ss_pred EEEEEEEeceeeecceeEEEEEEcceEeecccccccccC--CCC-C----CeeEecCCCCCCceeeeeeeeeeeEEEEeC
Q 026326 150 LKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFA--PQR-E----PYVHTLEEETTPSGVLARGLYSAKLKFEDD 222 (240)
Q Consensus 150 i~i~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~mlGSY~--P~~-e----~Y~~~fp~EeAPSGmLaRG~Y~akSkFvDD 222 (240)
+++.=.|-.+ |++=+|+-.|+=.||+|-+...=|=.-. |-. . .++...|+.+.| |+|.++.+-+|.
T Consensus 58 f~i~~ntg~t-Is~Gk~VIeV~y~gi~ihsethDLCdetsCPVepG~f~~~hsq~LPg~tPP------G~Y~lkm~~~d~ 130 (153)
T KOG4680|consen 58 FSISGNTGET-ISEGKYVIEVSYGGIRIHSETHDLCDETSCPVEPGDFLVAHSQVLPGYTPP------GSYVLKMTAYDA 130 (153)
T ss_pred EEEecccccE-eeCCeEEEEEEEeeEEEeeccccccccccCCcCcCceeeeeeEeccCcCCC------ceEEEEEEeecC
Confidence 3344444333 5677888888889999876655443222 111 1 366677877776 799999999999
Q ss_pred CCceEEEEEEeEEEe
Q 026326 223 DRRCHMELNYSFEIK 237 (240)
Q Consensus 223 Dk~~hL~~eWsfeI~ 237 (240)
+|...-=...+|.|.
T Consensus 131 ~~~~LTCisfsf~i~ 145 (153)
T KOG4680|consen 131 KGKELTCISFSFDIG 145 (153)
T ss_pred CCCEEEEEEEEEEee
Confidence 998776666666664
No 13
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=66.54 E-value=56 Score=25.12 Aligned_cols=96 Identities=19% Similarity=0.297 Sum_probs=51.6
Q ss_pred CCcEEEEEEEEEeCCCCceEeeCCCCCCCCCceeEEeccCCeEEEEEEEEEeceeeecceeE-EEEEEcceEeecc-ccc
Q 026326 106 EPEVKFHSIGIISDDFGEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIVSGLTYS-NTVWKAGLQVDQS-KGM 183 (240)
Q Consensus 106 ~p~V~i~~L~L~~egr~~i~~~L~~~~~~k~~~~f~IKEGs~Y~i~i~FkVq~eIVsGLkY~-q~VkR~GI~Vdk~-e~m 183 (240)
+.++.|.++.+.-.+.. ... .+.-|..++++|+|++.+. +.++.+- +.....|+.|-.. ..+
T Consensus 10 ~~~~~I~~v~i~~~~g~-----------~~~----~~~~ge~~~i~i~~~~~~~-i~~~~~~~~i~~~~g~~v~~~~t~~ 73 (142)
T PF14524_consen 10 NGEARITSVRILDSDGE-----------PTS----SFESGEPIRIRIDYEVNED-IDDPVFGFAIRDSDGQRVFGTNTYD 73 (142)
T ss_dssp -SSEEEEEEEEEETTEE-----------S-S----SEETTSEEEEEEEEEESS--EEEEEEEEEEEETT--EEEEEEHHH
T ss_pred CCCEEEEEEEEEeCCCC-----------Eee----EEeCCCEEEEEEEEEECCC-CCccEEEEEEEcCCCCEEEEECccc
Confidence 45688888887764221 112 1566888999999999554 5555543 3334566665433 333
Q ss_pred ccccCCC--CCCeeEecCCCCCCceeeeeeeeeeeEEEEe
Q 026326 184 LGTFAPQ--REPYVHTLEEETTPSGVLARGLYSAKLKFED 221 (240)
Q Consensus 184 lGSY~P~--~e~Y~~~fp~EeAPSGmLaRG~Y~akSkFvD 221 (240)
.+..-+. ...|++.+. -|.= |.-|.|.+..-+.+
T Consensus 74 ~~~~~~~~~~g~~~~~~~---i~~~-L~~G~Y~i~v~l~~ 109 (142)
T PF14524_consen 74 SGFPIPLSEGGTYEVTFT---IPKP-LNPGEYSISVGLGD 109 (142)
T ss_dssp HT--EEE-TT-EEEEEEE---EE---B-SEEEEEEEEEEE
T ss_pred cCccccccCCCEEEEEEE---EcCc-cCCCeEEEEEEEEe
Confidence 3422222 345555543 3343 88899999999943
No 14
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=61.79 E-value=25 Score=29.59 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=52.9
Q ss_pred EEEEEEeceeeecceeEEEEEEcceEeecccccccccCCCCCCeeEecCCCCCCceeeeeeeeeeeEEEEeCCCceEEEE
Q 026326 151 KLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMEL 230 (240)
Q Consensus 151 ~i~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~mlGSY~P~~e~Y~~~fp~EeAPSGmLaRG~Y~akSkFvDDDk~~hL~~ 230 (240)
.+.| +-.|-.|+-+.+.+.-.|-.|.....++..-.- ..++.. +.--|.+|.|.+-=+++-.|||.- +=
T Consensus 50 ~L~F--se~ve~~fs~~~l~~~d~~~v~t~~~~~~~~~~--~~l~v~------l~~~L~aG~Y~v~WrvvS~DGH~v-~G 118 (127)
T COG2372 50 TLEF--SEGVEPGFSGAKLTGPDGEEVATAGTKLDEQNH--TQLEVP------LPQPLKAGVYTVDWRVVSSDGHVV-KG 118 (127)
T ss_pred EEec--CCccCCCcceeEEECCCCCccccCcccccccCC--cEEEec------CcccCCCCcEEEEEEEEecCCcEe-cc
Confidence 4556 244556778888888877777666555432110 113332 223588999999999999999998 88
Q ss_pred EEeEEEee
Q 026326 231 NYSFEIKK 238 (240)
Q Consensus 231 eWsfeI~K 238 (240)
.++|.|++
T Consensus 119 ~~sFsV~~ 126 (127)
T COG2372 119 SISFSVGA 126 (127)
T ss_pred EEEEEecC
Confidence 89998864
No 15
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=47.69 E-value=1.5e+02 Score=23.86 Aligned_cols=83 Identities=23% Similarity=0.273 Sum_probs=54.9
Q ss_pred eEEeccCCeEEEEEEEEEeceeeecceeEEEEEEcceEeecc----cc--cccccCCCC--C--CeeEecCCC-CCCcee
Q 026326 139 LFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQS----KG--MLGTFAPQR--E--PYVHTLEEE-TTPSGV 207 (240)
Q Consensus 139 ~f~IKEGs~Y~i~i~FkVq~eIVsGLkY~q~VkR~GI~Vdk~----e~--mlGSY~P~~--e--~Y~~~fp~E-eAPSGm 207 (240)
|=+|+-|...+|.|.|.-+.+ ...|+-.-...-.||++--. .. -+|.-=|=. + .|.+.+|.. ..|
T Consensus 23 PC~l~rG~~~~~~i~F~~~~~-~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~~v~~~~P--- 98 (123)
T cd00916 23 PCKLKRGSTAKVSIDFTPNFD-STSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSLPVLAPYP--- 98 (123)
T ss_pred CCEEECCCEEEEEEEEEcCcc-cceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEeeeccccCC---
Confidence 678999999999999976555 56777776777778775421 10 112322332 2 366656643 345
Q ss_pred eeeeeeeeeEEEEeCCCceE
Q 026326 208 LARGLYSAKLKFEDDDRRCH 227 (240)
Q Consensus 208 LaRG~Y~akSkFvDDDk~~h 227 (240)
.++|.++-..+|+++...
T Consensus 99 --~i~~~v~~~L~d~~~~~~ 116 (123)
T cd00916 99 --GISVTVEWELTDDDGQVL 116 (123)
T ss_pred --CeEEEEEEEEEcCCCCEE
Confidence 467999999999877754
No 16
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=45.44 E-value=45 Score=22.84 Aligned_cols=29 Identities=34% Similarity=0.577 Sum_probs=22.0
Q ss_pred CCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEe
Q 026326 200 EETTPSGVLARGLYSAKLKFEDDDRRCHMELNYS 233 (240)
Q Consensus 200 ~EeAPSGmLaRG~Y~akSkFvDDDk~~hL~~eWs 233 (240)
.++...+--.||+|. |+|+||+.+ ++.|.
T Consensus 18 ~~~~~~~~~v~GsY~----y~~pdG~~~-~V~Y~ 46 (52)
T PF00379_consen 18 PETEDEGGVVRGSYS----YIDPDGQTR-TVTYV 46 (52)
T ss_pred cccCCCCCEEEEEEE----EECCCCCEE-EEEEE
Confidence 345556677789997 899999987 77774
No 17
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=44.85 E-value=7 Score=31.67 Aligned_cols=6 Identities=33% Similarity=0.268 Sum_probs=0.5
Q ss_pred Cccccc
Q 026326 60 GVVAGF 65 (240)
Q Consensus 60 ~~~~~y 65 (240)
++++.|
T Consensus 41 ~p~p~f 46 (101)
T PF09026_consen 41 VPVPEF 46 (101)
T ss_dssp -----H
T ss_pred ccchhH
Confidence 555554
No 18
>PF05351 GMP_PDE_delta: GMP-PDE, delta subunit; InterPro: IPR008015 GMP-PDE delta subunit was originally identified as a fourth subunit of rod-specific cGMP phosphodiesterase (PDE) (3.1.4.35 from EC). The precise function of PDE delta subunit in the rod specific GMP-PDE complex is unclear. In addition, PDE delta subunit is not confined to photoreceptor cells but is widely distributed in different tissues. PDE delta subunit is thought to be a specific soluble transport factor for certain prenylated proteins and Arl2-GTP a regulator of PDE-mediated transport [].; PDB: 3RBQ_B 3GQQ_C 3T5I_A 3T5G_B 1KSG_B 1KSJ_B 1KSH_B.
Probab=44.24 E-value=48 Score=28.75 Aligned_cols=79 Identities=13% Similarity=0.178 Sum_probs=56.0
Q ss_pred eEEEEEEEEEeceeeecceeEEEEEEcceEeecccccccccCCCCC---CeeEecC--CCCCCceeeeeeee--eeeEEE
Q 026326 147 RFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQRE---PYVHTLE--EETTPSGVLARGLY--SAKLKF 219 (240)
Q Consensus 147 ~Y~i~i~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~mlGSY~P~~e---~Y~~~fp--~EeAPSGmLaRG~Y--~akSkF 219 (240)
.-.-+|.|.|-.++|.++|-+|.++=+|-.+..-..-.|=--|++. .+.|.+| .+..|.-|++ |.| ..-|.|
T Consensus 62 ~V~~~i~Fsvg~~pv~nFRmierhyF~~~llk~~dF~FGFcIP~S~NTwE~iye~p~l~~~l~~~mi~-gp~et~sdSfy 140 (157)
T PF05351_consen 62 TVGREIEFSVGDEPVNNFRMIERHYFRDQLLKSFDFEFGFCIPNSTNTWEHIYEFPPLSQMLPAEMIS-GPYETKSDSFY 140 (157)
T ss_dssp EEEEEEEEEE-SS-ECCEEEEEEEEETTEEEEEEEEEEEEE-TTCEEEEEEEEEB--CSCCHHHHHHC-TTTTEEEEEEE
T ss_pred hheEEEEEEECceeccccEeeEeeeecCceeeEEEeeeeeEcCCCccceeEEEEcCCCCchhHHHHHc-CCCcceEEEEE
Confidence 3456799999889999999999999999999999998888889975 3556566 3344554443 766 456677
Q ss_pred EeCCCce
Q 026326 220 EDDDRRC 226 (240)
Q Consensus 220 vDDDk~~ 226 (240)
.+||+-+
T Consensus 141 fv~~~Li 147 (157)
T PF05351_consen 141 FVDDKLI 147 (157)
T ss_dssp EETTEEE
T ss_pred EeCCEEE
Confidence 7776543
No 19
>TIGR03711 acc_sec_asp3 accessory Sec system protein Asp3. This protein is designated Asp3 because, along with SecY2, SecA2, and other proteins it is part of the accessory Sec system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=43.85 E-value=63 Score=27.40 Aligned_cols=54 Identities=20% Similarity=0.333 Sum_probs=39.3
Q ss_pred EEeccCCeEEEEEEEEEeceeeecceeEEEEEEcceEeecccccccccCCCCCCeeEecCCC
Q 026326 140 FTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEE 201 (240)
Q Consensus 140 f~IKEGs~Y~i~i~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~mlGSY~P~~e~Y~~~fp~E 201 (240)
-.||.|.+|+|.+.+.+.. .|--|++++.= |+....|++.-=+...-+|..|.+
T Consensus 59 PlLk~g~~Y~i~~n~~~~P---~~s~~~ki~F~-----dr~~~ei~~~i~~~~~~~F~yP~~ 112 (135)
T TIGR03711 59 PLLKRGQTYKLSLNADASP---EGSVYLKITFF-----DRQGEEIGTEIEKDDSIIFIYPDE 112 (135)
T ss_pred cEEcCCCEEEEEEeeeeCC---CceEEEEEEEe-----ccCCceeceEEEecCceEEECCCc
Confidence 3589999999999998854 36677777653 666777777766666666666655
No 20
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=34.20 E-value=1.7e+02 Score=22.81 Aligned_cols=33 Identities=30% Similarity=0.530 Sum_probs=21.6
Q ss_pred cccccccC---CCCCCeeEecC-CCCCCceeeeeeeeee
Q 026326 181 KGMLGTFA---PQREPYVHTLE-EETTPSGVLARGLYSA 215 (240)
Q Consensus 181 e~mlGSY~---P~~e~Y~~~fp-~EeAPSGmLaRG~Y~a 215 (240)
.-.+|.++ |.. .|+|..- .=.+|.|. ++|+|..
T Consensus 50 ~GVVG~~P~L~pGe-~f~Y~S~~~l~t~~G~-M~G~y~~ 86 (90)
T PF04379_consen 50 EGVVGQQPVLAPGE-SFEYTSGCPLSTPSGS-MEGSYTM 86 (90)
T ss_dssp ESBTTB--EE-TTE-EEEEEEEEEESSSEEE-EEEEEEE
T ss_pred CceEccCceECCCC-cEEEcCCCCcCCCCEE-EEEEEEE
Confidence 44677776 544 6777655 44678998 8999974
No 21
>PF15043 CNRIP1: CB1 cannabinoid receptor-interacting protein 1
Probab=33.58 E-value=2.1e+02 Score=25.14 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=32.5
Q ss_pred CcEEEEEEEEEeC-CCCceEeeCCCCCCCCCceeEEeccCCeEEEEEEEEE
Q 026326 107 PEVKFHSIGIISD-DFGEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNV 156 (240)
Q Consensus 107 p~V~i~~L~L~~e-gr~~i~~~L~~~~~~k~~~~f~IKEGs~Y~i~i~FkV 156 (240)
|...-.+|+|..+ +..|+-+...+.-=.+.. +++|-=|++|+|.|.||=
T Consensus 5 ~~~f~vslslk~~pn~~PVffKvDG~RF~q~R-TiKl~tdskYkv~V~~kP 54 (161)
T PF15043_consen 5 PGLFRVSLSLKIQPNDGPVFFKVDGQRFGQNR-TIKLLTDSKYKVDVTIKP 54 (161)
T ss_pred CceEEEEEEEEeCCCCCcEEEEecccccCCce-EEEEecCCEEEEEEEEcC
Confidence 5445566677665 344677775433212333 788899999999999985
No 22
>PHA00407 phage lambda Rz1-like protein
Probab=33.06 E-value=15 Score=28.72 Aligned_cols=12 Identities=58% Similarity=1.215 Sum_probs=10.1
Q ss_pred hHHHHHhhhCCC
Q 026326 85 SLRRWKEKLLGC 96 (240)
Q Consensus 85 SL~kwKesLLG~ 96 (240)
-|+|||++|+|.
T Consensus 27 tl~rwkaaLIGl 38 (84)
T PHA00407 27 TLRRWKAALIGL 38 (84)
T ss_pred hhHHHHHHHHHH
Confidence 589999999773
No 23
>PF13752 DUF4165: Domain of unknown function (DUF4165)
Probab=32.24 E-value=72 Score=26.81 Aligned_cols=30 Identities=27% Similarity=0.464 Sum_probs=27.6
Q ss_pred eeeeeeeeeEEEEeCCCceEEEEEEeEEEe
Q 026326 208 LARGLYSAKLKFEDDDRRCHMELNYSFEIK 237 (240)
Q Consensus 208 LaRG~Y~akSkFvDDDk~~hL~~eWsfeI~ 237 (240)
|.-|.|++++-..|-+|.+.-+|.|.|-|-
T Consensus 91 l~dG~ytvk~eiL~s~g~vV~t~s~~~~ID 120 (124)
T PF13752_consen 91 LGDGTYTVKSEILDSQGTVVQTYSYPFTID 120 (124)
T ss_pred CCCCcEEEEEEeeccCCCEEEeeeEeEEEe
Confidence 477999999999999999999999999874
No 24
>COG3241 Azurin [Energy production and conversion]
Probab=31.27 E-value=75 Score=27.17 Aligned_cols=49 Identities=16% Similarity=0.108 Sum_probs=30.2
Q ss_pred CCCCCCcEEEEEEEEEeCCCCceEeeCCCCCCCCCceeEEeccCCeEEEEEEEEEeceee
Q 026326 102 NGQMEPEVKFHSIGIISDDFGEITTPLPIDKNQNGHVLFTLKEGSRFQLKLTFNVMHNIV 161 (240)
Q Consensus 102 ~~~~~p~V~i~~L~L~~egr~~i~~~L~~~~~~k~~~~f~IKEGs~Y~i~i~FkVq~eIV 161 (240)
..+++|+|+-.---|-...+..|++| +-+|++|.+|.+-.+|-=+-...
T Consensus 95 vkpdD~RViAHTklIGgGE~~S~Tfd-----------~~kL~~g~~Y~FfCtFPGH~ALM 143 (151)
T COG3241 95 VKPDDARVIAHTKLIGGGEETSLTFD-----------PAKLADGVEYKFFCTFPGHGALM 143 (151)
T ss_pred CCCCCcceEEEeeeecCCccceEecC-----------HHHhcCCceEEEEEecCCcHHhh
Confidence 36778888665422222223345555 34589999999999996544333
No 25
>PF02494 HYR: HYR domain; InterPro: IPR003410 This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin that is composed exclusively of this repeat. This domain probably corresponds to a new superfamily in the immunoglobulin fold. The function of this domain is uncertain it may be involved in cell adhesion. In the Sushi repeat-containing protein (SrpX), this domain is found between two sushi repeats.
Probab=30.88 E-value=1.4e+02 Score=21.76 Aligned_cols=31 Identities=10% Similarity=0.232 Sum_probs=24.5
Q ss_pred CCCceeeeeeeeeeeEEEEeCCCceEEEEEEe
Q 026326 202 TTPSGVLARGLYSAKLKFEDDDRRCHMELNYS 233 (240)
Q Consensus 202 eAPSGmLaRG~Y~akSkFvDDDk~~hL~~eWs 233 (240)
-.|..+|.-|.|.++-+.+|.-|+.- +....
T Consensus 48 ~~~g~~f~~G~t~V~ytA~D~~GN~a-~C~f~ 78 (81)
T PF02494_consen 48 HPPGDLFPVGTTTVTYTATDAAGNSA-TCSFT 78 (81)
T ss_pred CCCCceEeeceEEEEEEEEECCCCEE-EEEEE
Confidence 45667899999999999999988765 54433
No 26
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=30.06 E-value=85 Score=25.49 Aligned_cols=43 Identities=21% Similarity=0.300 Sum_probs=27.2
Q ss_pred eEEEEEEEEEeceeeecceeEEEEEEcceEeecccccccccCCCC
Q 026326 147 RFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQSKGMLGTFAPQR 191 (240)
Q Consensus 147 ~Y~i~i~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~mlGSY~P~~ 191 (240)
+|+++|+|--+.+ +.|=-++..--.+|.. ...+...|++.|+.
T Consensus 2 ~Yqv~V~~s~~~~-~~g~~~vsL~G~~g~s-~~~~i~~g~l~pg~ 44 (113)
T cd01759 2 RYKVSVTLSGKKK-VTGTILVSLYGNKGNT-RQYEIFKGTLKPGN 44 (113)
T ss_pred eEEEEEEEecccc-cCceEEEEEEcCCCCc-cceEEEeeeecCCC
Confidence 6999999977544 6666666555444433 44455577777764
No 27
>PRK10301 hypothetical protein; Provisional
Probab=29.30 E-value=57 Score=26.64 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=26.1
Q ss_pred eeeeeeeeeeEEEEeCCCceEEEEEEeEEEe
Q 026326 207 VLARGLYSAKLKFEDDDRRCHMELNYSFEIK 237 (240)
Q Consensus 207 mLaRG~Y~akSkFvDDDk~~hL~~eWsfeI~ 237 (240)
-|.-|+|++.=+.+-.|||.- +=.|+|.|+
T Consensus 95 ~L~~G~YtV~Wrvvs~DGH~~-~G~~~F~V~ 124 (124)
T PRK10301 95 SLKPGTYTVDWHVVSVDGHKT-KGHYTFSVK 124 (124)
T ss_pred CCCCccEEEEEEEEecCCCcc-CCeEEEEEC
Confidence 456799999999999999987 888888874
No 28
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=28.86 E-value=6.2e+02 Score=25.59 Aligned_cols=84 Identities=14% Similarity=0.222 Sum_probs=52.9
Q ss_pred eEEeccCCeEEEEEEEEEeceeeecceeEEEEEEc-ceEeecccccccccCCCCCCeeEecCCCCCCceeeeeeeeeeeE
Q 026326 139 LFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKA-GLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKL 217 (240)
Q Consensus 139 ~f~IKEGs~Y~i~i~FkVq~eIVsGLkY~q~VkR~-GI~Vdk~e~mlGSY~P~~e~Y~~~fp~EeAPSGmLaRG~Y~akS 217 (240)
.++|.+|+ ++|.|.|... ..+...-+|+-+ |-.+...+.-|+. ..+.++++...+- =|+|+++.
T Consensus 321 eY~I~dG~---~~i~ftv~a~--g~~~vta~V~d~~g~~~~~~~~~v~d-----~s~~vtL~Ls~~~-----AG~y~Lvv 385 (478)
T PRK13211 321 EYKIGDGA---ATLDFTVTAT--GDMNVEATVYNHDGEALGSKSQTVND-----GSQSVSLDLSKLK-----AGHHMLVV 385 (478)
T ss_pred eeEEcCCc---EEEEEEEEec--cceEEEEEEEcCCCCeeeeeeEEecC-----CceeEEEecccCC-----CceEEEEE
Confidence 58888884 5788888654 355555555432 2222222222221 2255555554433 48999999
Q ss_pred EEEeCCCceEEEEEEeEEEe
Q 026326 218 KFEDDDRRCHMELNYSFEIK 237 (240)
Q Consensus 218 kFvDDDk~~hL~~eWsfeI~ 237 (240)
+-+|+||....+=..+|.++
T Consensus 386 ~~t~~dG~~~~q~~~~~~v~ 405 (478)
T PRK13211 386 KAKPKDGELIKQQTLDFMLE 405 (478)
T ss_pred EEEeCCCceeeeeeEEEEEE
Confidence 99999999987777788775
No 29
>PF10651 DUF2479: Domain of unknown function (DUF2479); InterPro: IPR018913 This domain is found in phage from a number of different bacteria including (Listeria phage A118 (Bacteriophage A118)). It is thought to be a putative long tail fibre protein.; PDB: 4DIV_L 3UH8_A.
Probab=27.43 E-value=67 Score=27.06 Aligned_cols=41 Identities=29% Similarity=0.344 Sum_probs=24.8
Q ss_pred CeeEecCCCCCCceeee-eeeeeeeEEEEe--CCCceEEEEEEeEEEeec
Q 026326 193 PYVHTLEEETTPSGVLA-RGLYSAKLKFED--DDRRCHMELNYSFEIKKS 239 (240)
Q Consensus 193 ~Y~~~fp~EeAPSGmLa-RG~Y~akSkFvD--DDk~~hL~~eWsfeI~Kd 239 (240)
..+|++|.+ +|+ -|.|.|...|.. ++...| +.+.+|.|.++
T Consensus 83 ~i~y~lp~~-----~l~~~G~v~a~~~i~~~~~~~~~~-t~~F~F~V~~s 126 (170)
T PF10651_consen 83 IIQYTLPDE-----FLKHVGKVKAQLFIYYNGDGQSIS-TANFTFEVEDS 126 (170)
T ss_dssp EEEEE--TT-----TTHSSEEEEEEEEEEEESSSEEEE----EEEEEE--
T ss_pred EEEEEECHH-----HhccCcEEEEEEEEEECCCCCEEE-EeeEEEEEecc
Confidence 466666654 443 599999988888 555555 88899999864
No 30
>smart00700 JHBP Juvenile hormone binding protein domains in insects. The juvenile hormone exerts pleiotropic functions during insect life cycles and its binding proteins regulate these functions.
Probab=27.35 E-value=4.1e+02 Score=22.95 Aligned_cols=10 Identities=20% Similarity=0.355 Sum_probs=6.4
Q ss_pred hhHHHHHhhh
Q 026326 84 DSLRRWKEKL 93 (240)
Q Consensus 84 ESL~kwKesL 93 (240)
++++.+..+|
T Consensus 21 ~~~~~~~~~~ 30 (225)
T smart00700 21 DAIEALLPQL 30 (225)
T ss_pred HHHHHHHHHH
Confidence 3566677666
No 31
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=27.25 E-value=1.3e+02 Score=24.47 Aligned_cols=28 Identities=25% Similarity=0.468 Sum_probs=21.4
Q ss_pred eeeeeeeEEEEeC-CCceEEEEEEeEEEe
Q 026326 210 RGLYSAKLKFEDD-DRRCHMELNYSFEIK 237 (240)
Q Consensus 210 RG~Y~akSkFvDD-Dk~~hL~~eWsfeI~ 237 (240)
--+|.+..+|+.. ++.+.+.|...|+-.
T Consensus 92 ~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~ 120 (148)
T cd07816 92 YKSYKVEIKFVPKGDGGCVVKWTIEYEKK 120 (148)
T ss_pred eEEEEEEEEEEECCCCCEEEEEEEEEEEC
Confidence 3578889999875 667888888888743
No 32
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=26.92 E-value=2.1e+02 Score=23.00 Aligned_cols=61 Identities=18% Similarity=0.382 Sum_probs=40.9
Q ss_pred ecceeEEEEEEcceEeecccccccccCCCCCCeeEecCCCCCCceeeeeeeeeeeEEEEeCCCc-eEEEEEEeEE
Q 026326 162 SGLTYSNTVWKAGLQVDQSKGMLGTFAPQREPYVHTLEEETTPSGVLARGLYSAKLKFEDDDRR-CHMELNYSFE 235 (240)
Q Consensus 162 sGLkY~q~VkR~GI~Vdk~e~mlGSY~P~~e~Y~~~fp~EeAPSGmLaRG~Y~akSkFvDDDk~-~hL~~eWsfe 235 (240)
.|++|....++.+ ....-|-.|.|+ ..|.+.| .-+||++.++=.+.+-|.. +-+.++-.++
T Consensus 40 ~G~~Y~K~~~~~~----~~~v~It~~~~~-~~Y~~~~--------~s~~~~~~i~Y~i~~~~~~~~~v~y~E~~~ 101 (120)
T PF11687_consen 40 KGFSYQKKFKNKR----EAKVKITEYEPN-KRYAATF--------SSSRGTFTISYEIEPLDDGSIEVTYEEEYE 101 (120)
T ss_pred CCcEEEEEcCCCC----EEEEEEEEEcCC-CEEEEEE--------EecCCCEEEEEEEEECCCCcEEEEEEEEEc
Confidence 7888888877654 233337788885 4566655 3467888888888876655 6666655543
No 33
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=23.79 E-value=5e+02 Score=22.76 Aligned_cols=95 Identities=19% Similarity=0.288 Sum_probs=60.5
Q ss_pred eEEeccCCeEEEEEEEEEeceeeecceeEEEEEEcceEeecc-----ccc-----ccccCCCC--CC--eeEecC-CCCC
Q 026326 139 LFTLKEGSRFQLKLTFNVMHNIVSGLTYSNTVWKAGLQVDQS-----KGM-----LGTFAPQR--EP--YVHTLE-EETT 203 (240)
Q Consensus 139 ~f~IKEGs~Y~i~i~FkVq~eIVsGLkY~q~VkR~GI~Vdk~-----e~m-----lGSY~P~~--e~--Y~~~fp-~EeA 203 (240)
+=.||-|.+++|.|.|++.++.-+=..-+|..-=.+|+|.=. --. =|=|=|-. |. |...|| -++=
T Consensus 49 pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~~lg~v~vPfpl~~~dacv~~~l~~gv~CPl~age~ytY~~slpI~~~y 128 (158)
T KOG4063|consen 49 PCQLKKGTEASIQIDFAPSRDTTKLKTVVHGITLGSVPVPFPLPASDACVCGNLLHGVYCPLSAGEDYTYLNSLPITENY 128 (158)
T ss_pred ceEEecCCeEEEEEEEeeccchhhhhheeeeeecccEeecCCCCCCcccccccccccccCcccCCCceEEEEEeeccccC
Confidence 677999999999999999988765555555554444766311 111 12344442 33 556666 3466
Q ss_pred CceeeeeeeeeeeEEEEeCCCceEEEEEEeEEEee
Q 026326 204 PSGVLARGLYSAKLKFEDDDRRCHMELNYSFEIKK 238 (240)
Q Consensus 204 PSGmLaRG~Y~akSkFvDDDk~~hL~~eWsfeI~K 238 (240)
|++-+ .+.-.-.|+|+..-.=|+-.-+|+|
T Consensus 129 P~v~v-----~iew~L~D~d~~~~~Cf~ipakIk~ 158 (158)
T KOG4063|consen 129 PEVSV-----IIEWQLQDQDNEKAVCFEIPAKIKK 158 (158)
T ss_pred CceeE-----EEEEEEecCCCCeEEEEEEEeeecC
Confidence 77544 3556778998887666666666654
No 34
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=22.40 E-value=2.1e+02 Score=22.64 Aligned_cols=39 Identities=8% Similarity=0.141 Sum_probs=24.5
Q ss_pred EEEEEEeCCCCceEeeCCCCCCCCCceeEEec--cCCeEEEEEEEE
Q 026326 112 HSIGIISDDFGEITTPLPIDKNQNGHVLFTLK--EGSRFQLKLTFN 155 (240)
Q Consensus 112 ~~L~L~~egr~~i~~~L~~~~~~k~~~~f~IK--EGs~Y~i~i~Fk 155 (240)
.-|+|.+++..++.++|+. .. +.|..+ +|.+|.+.|.|-
T Consensus 13 V~ltI~v~d~~d~~v~l~~----~~-l~f~~~~~~g~~y~~~l~l~ 53 (106)
T cd00237 13 VFIEFCVEDSKDVKVDFEK----SK-LTFSCLNGDNVKIYNEIELY 53 (106)
T ss_pred EEEEEEeCCCCCcEEEEec----CE-EEEEEECCCCcEEEEEEEee
Confidence 3456677666666777652 12 566655 568888777774
No 35
>PF04787 Pox_H7: Late protein H7; InterPro: IPR006872 This is a family of poxvirus late H7 proteins.
Probab=22.34 E-value=72 Score=27.55 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=21.8
Q ss_pred eeeeeeeeEEE-EeCCCceEEEEEE
Q 026326 209 ARGLYSAKLKF-EDDDRRCHMELNY 232 (240)
Q Consensus 209 aRG~Y~akSkF-vDDDk~~hL~~eW 232 (240)
.||.++....| +|+||+..++|+|
T Consensus 29 L~~~~P~~tifsid~~g~f~iDF~Y 53 (147)
T PF04787_consen 29 LLNKHPNDTIFSIDEDGKFFIDFEY 53 (147)
T ss_pred HhcCCCcceeeeEcCCCCEEEEeee
Confidence 46889999999 9999999999998
No 36
>PF06155 DUF971: Protein of unknown function (DUF971); InterPro: IPR010376 This domain is found in gamma-butyrobetaine dioxygenase and trimethyllysine dioxygenase proteins.; PDB: 2L6N_A 3LUU_A 2L6P_A 3MS5_A 3O2G_A 3N6W_A.
Probab=20.43 E-value=22 Score=26.90 Aligned_cols=39 Identities=10% Similarity=0.277 Sum_probs=26.5
Q ss_pred eeEecCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEE
Q 026326 194 YVHTLEEETTPSGVLARGLYSAKLKFEDDDRRCHMELNY 232 (240)
Q Consensus 194 Y~~~fp~EeAPSGmLaRG~Y~akSkFvDDDk~~hL~~eW 232 (240)
.....|.+-.|..+-.-|.|.+...|-|+...-..+|+|
T Consensus 49 ~~~~~~~~v~~~~i~~~G~y~l~i~WsDGH~sgiY~~~~ 87 (89)
T PF06155_consen 49 DTADIPPDVRPKSIEPVGNYALRITWSDGHDSGIYPWEW 87 (89)
T ss_dssp ---GCGTTTTEEEEEEETTTEEEEEETTSB---EEEHHH
T ss_pred cccccCCCceEeEEEECCCCEEEEEECCCCceeEecHHH
Confidence 355678899999998889999999998765552236554
No 37
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=20.12 E-value=1.5e+02 Score=25.04 Aligned_cols=31 Identities=35% Similarity=0.468 Sum_probs=23.3
Q ss_pred CCeeEecC-CCCCCceeeeeeeeeeeEEEEeCCCceE
Q 026326 192 EPYVHTLE-EETTPSGVLARGLYSAKLKFEDDDRRCH 227 (240)
Q Consensus 192 e~Y~~~fp-~EeAPSGmLaRG~Y~akSkFvDDDk~~h 227 (240)
+.|+|+.- +=.+|+|. .||+|.+ +|+||..+
T Consensus 79 ~~y~YtSg~~l~Tp~G~-M~GhY~M----~~e~G~~F 110 (126)
T COG2967 79 EEYQYTSGCPLDTPSGT-MQGHYEM----IDEDGETF 110 (126)
T ss_pred CceEEcCCcCccCCcce-EEEEEEE----ecCCCcEE
Confidence 45777765 66889996 4899986 57888766
Done!