Query 026327
Match_columns 240
No_of_seqs 117 out of 215
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 10:55:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026327.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026327hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2diia1 a.240.1.1 (A:8-55) TFI 66.5 0.87 6.4E-05 29.2 0.9 12 29-40 31-42 (48)
2 d1oqja_ d.217.1.1 (A:) Glucoco 37.9 5.2 0.00038 28.5 1.2 23 29-53 35-57 (90)
3 d1wyha1 g.39.1.3 (A:35-66) Fou 37.9 2.2 0.00016 25.2 -0.8 21 59-82 8-28 (32)
4 d1wlza1 a.39.1.7 (A:229-311) D 36.6 10 0.00074 24.8 2.5 35 3-41 11-45 (83)
5 d1h5pa_ d.217.1.1 (A:) Nuclear 26.0 9.4 0.00068 27.4 0.8 22 30-53 41-63 (95)
6 d1qk7a_ g.3.6.2 (A:) Lectin SH 25.5 8.2 0.00059 22.2 0.3 6 50-55 21-26 (32)
7 d1snla_ a.39.1.7 (A:) Nucleobi 24.4 9.5 0.00069 26.0 0.6 21 21-41 73-93 (99)
8 d1ufna_ d.217.1.1 (A:) Putativ 22.0 12 0.0009 26.6 0.8 20 32-53 49-68 (94)
9 d2eyqa1 b.34.18.1 (A:466-545) 21.6 13 0.00097 25.5 0.9 9 40-48 13-21 (80)
10 d1qjta_ a.39.1.6 (A:) Eps15 {M 18.6 17 0.0012 25.0 0.9 18 24-41 53-70 (99)
No 1
>d2diia1 a.240.1.1 (A:8-55) TFIIH basal transcription factor complex p62 subunit, BTF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=66.49 E-value=0.87 Score=29.21 Aligned_cols=12 Identities=33% Similarity=0.354 Sum_probs=10.1
Q ss_pred cccccCHHHHHH
Q 026327 29 EKGVLSVSEFVL 40 (240)
Q Consensus 29 etG~LTPeEFV~ 40 (240)
-+||||+|||-+
T Consensus 31 vs~VitseEFWa 42 (48)
T d2diia1 31 VSQVISAEEFWA 42 (48)
T ss_dssp TTTSSCHHHHHH
T ss_pred HhccccHHHHHH
Confidence 379999999954
No 2
>d1oqja_ d.217.1.1 (A:) Glucocorticoid modulatory element binding protein-1 (Gmeb1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.95 E-value=5.2 Score=28.54 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=18.5
Q ss_pred cccccCHHHHHHhcccccccCCcee
Q 026327 29 EKGVLSVSEFVLAGDNLVSKCPTWS 53 (240)
Q Consensus 29 etG~LTPeEFV~AGD~LV~kfPTW~ 53 (240)
+...+||.||+.-|..--.| .|+
T Consensus 35 ~g~w~TP~EFe~~~gk~~sK--~WK 57 (90)
T d1oqja_ 35 NDQLISPKHFVHLAGKSTLK--DWK 57 (90)
T ss_dssp TTEEECHHHHHHHTTCGGGS--CHH
T ss_pred CCEEECHHHHhhhcCccccC--CCc
Confidence 45679999999999887776 565
No 3
>d1wyha1 g.39.1.3 (A:35-66) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.89 E-value=2.2 Score=25.16 Aligned_cols=21 Identities=29% Similarity=0.702 Sum_probs=16.8
Q ss_pred CCCCCCCCCCCCeeEEecCCcchh
Q 026327 59 PSKRKSYLPADKQFLITRNVPCLR 82 (240)
Q Consensus 59 ~~k~k~yLP~dKQfLvTRnVPC~~ 82 (240)
|--.|+|+|++-++.- ||||.
T Consensus 8 PIGtkSFip~~~~~yC---vpCYE 28 (32)
T d1wyha1 8 PLGSRSFVPDKGAHYC---VPCYE 28 (32)
T ss_dssp BTTTSCEEEETTEEEE---HHHHH
T ss_pred cccccccccCCCcEEE---Eeccc
Confidence 4457899999999874 88885
No 4
>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.63 E-value=10 Score=24.76 Aligned_cols=35 Identities=14% Similarity=0.242 Sum_probs=23.5
Q ss_pred hHHHHHHHHhhhhhhhccCCCCCccccccccCHHHHHHh
Q 026327 3 LQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLA 41 (240)
Q Consensus 3 ~~~~l~s~~~~~~eyltPv~~~S~F~etG~LTPeEFV~A 41 (240)
|+.++.+.+..+++.+.-.-+ ..+|.||.+||.++
T Consensus 11 l~~~i~~~~~~l~~~F~~~D~----~~~G~i~~~ef~~~ 45 (83)
T d1wlza1 11 LHKAVTSHYHAITQEFENFDT----MKTNTISREEFRAI 45 (83)
T ss_dssp HHHHHHHTHHHHHHHHHHHCT----TCSSCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCC----CCCceEChhHHHHH
Confidence 455666666666666644333 34899999999875
No 5
>d1h5pa_ d.217.1.1 (A:) Nuclear autoantigen Sp100b {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.99 E-value=9.4 Score=27.38 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=17.1
Q ss_pred cc-ccCHHHHHHhcccccccCCcee
Q 026327 30 KG-VLSVSEFVLAGDNLVSKCPTWS 53 (240)
Q Consensus 30 tG-~LTPeEFV~AGD~LV~kfPTW~ 53 (240)
.| .+||.||+.-|...-.| .|+
T Consensus 41 ~g~w~TP~EFe~~~Gk~~sK--dWK 63 (95)
T d1h5pa_ 41 DKKWFTPREFEIEGDRGASK--NWK 63 (95)
T ss_dssp TTEEECHHHHHHHHTCSTTC--CHH
T ss_pred CCcEeCHHHHhhccCCcccC--CCc
Confidence 45 89999999998866555 565
No 6
>d1qk7a_ g.3.6.2 (A:) Lectin SHL-I {Chinese bird spider (Selenocosmia huwena) [TaxId: 29017]}
Probab=25.49 E-value=8.2 Score=22.21 Aligned_cols=6 Identities=50% Similarity=1.503 Sum_probs=5.3
Q ss_pred CceecC
Q 026327 50 PTWSWE 55 (240)
Q Consensus 50 PTW~W~ 55 (240)
|||+|.
T Consensus 21 ~twkwc 26 (32)
T d1qk7a_ 21 RTWKWC 26 (32)
T ss_dssp SSSCBE
T ss_pred Cceeee
Confidence 799996
No 7
>d1snla_ a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.43 E-value=9.5 Score=25.96 Aligned_cols=21 Identities=10% Similarity=0.194 Sum_probs=16.3
Q ss_pred CCCCCccccccccCHHHHHHh
Q 026327 21 HRTVSAFKEKGVLSVSEFVLA 41 (240)
Q Consensus 21 v~~~S~F~etG~LTPeEFV~A 41 (240)
+.+.-..-..|.||-+||++|
T Consensus 73 ~~~~~D~d~DG~Is~~EF~~~ 93 (99)
T d1snla_ 73 VMKNVDTNQDRLVTLEEFLAS 93 (99)
T ss_dssp HHHHTCSSCSSEEEHHHHHHH
T ss_pred HHHHcCCCCCCcCcHHHHHHH
Confidence 334456677899999999986
No 8
>d1ufna_ d.217.1.1 (A:) Putative nuclear protein homolog 5830484a20rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.97 E-value=12 Score=26.62 Aligned_cols=20 Identities=40% Similarity=0.689 Sum_probs=15.0
Q ss_pred ccCHHHHHHhcccccccCCcee
Q 026327 32 VLSVSEFVLAGDNLVSKCPTWS 53 (240)
Q Consensus 32 ~LTPeEFV~AGD~LV~kfPTW~ 53 (240)
.+||.||+..|..--.| .|+
T Consensus 49 w~TP~eFe~~~gk~~~K--~WK 68 (94)
T d1ufna_ 49 WLTVKEFLNEGGRATSK--DWK 68 (94)
T ss_dssp EECHHHHHHHHTCTTCS--CHH
T ss_pred EECHHHHHHhcCccccC--CCc
Confidence 79999999988854444 454
No 9
>d2eyqa1 b.34.18.1 (A:466-545) Transcription-repair coupling factor, RRCF, middle domain {Escherichia coli [TaxId: 562]}
Probab=21.61 E-value=13 Score=25.46 Aligned_cols=9 Identities=22% Similarity=0.254 Sum_probs=7.2
Q ss_pred Hhccccccc
Q 026327 40 LAGDNLVSK 48 (240)
Q Consensus 40 ~AGD~LV~k 48 (240)
..|||+||.
T Consensus 13 ~~GD~VVH~ 21 (80)
T d2eyqa1 13 HIGQPVVHL 21 (80)
T ss_dssp CTTCEEEET
T ss_pred CCCCEEEEc
Confidence 678888885
No 10
>d1qjta_ a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.57 E-value=17 Score=24.97 Aligned_cols=18 Identities=44% Similarity=0.610 Sum_probs=14.0
Q ss_pred CCccccccccCHHHHHHh
Q 026327 24 VSAFKEKGVLSVSEFVLA 41 (240)
Q Consensus 24 ~S~F~etG~LTPeEFV~A 41 (240)
....-..|.||-+||+.|
T Consensus 53 ~~D~d~dG~L~~~EF~~a 70 (99)
T d1qjta_ 53 LADTDGKGVLSKQEFFVA 70 (99)
T ss_dssp HHCCSSSSSCCSHHHHHH
T ss_pred HHcCCCCCccCHHHHHHH
Confidence 344567899999999865
Done!