Query 026328
Match_columns 240
No_of_seqs 133 out of 843
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 06:36:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026328.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026328hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2182 Hydrolytic enzymes of 100.0 2.5E-43 5.4E-48 318.4 14.4 204 13-232 277-503 (514)
2 PF05577 Peptidase_S28: Serine 100.0 4.6E-40 1E-44 303.3 5.5 192 13-220 217-434 (434)
3 KOG2183 Prolylcarboxypeptidase 100.0 2.2E-38 4.8E-43 280.2 14.8 215 2-237 257-490 (492)
4 PF05576 Peptidase_S37: PS-10 98.7 2.8E-07 6.1E-12 83.3 11.8 173 11-229 232-412 (448)
5 COG3977 Alanine-alpha-ketoisov 71.1 2.9 6.2E-05 37.3 2.0 30 135-165 84-113 (417)
6 PF01738 DLH: Dienelactone hyd 69.9 4.2 9E-05 33.5 2.8 66 150-227 146-217 (218)
7 COG3544 Uncharacterized protei 60.9 10 0.00023 31.1 3.3 23 211-233 167-189 (190)
8 KOG1454 Predicted hydrolase/ac 56.5 16 0.00036 32.6 4.2 39 150-190 265-307 (326)
9 PRK10673 acyl-CoA esterase; Pr 56.1 14 0.0003 30.6 3.5 37 150-188 196-236 (255)
10 PHA02857 monoglyceride lipase; 48.4 37 0.00081 28.6 5.0 58 150-230 210-272 (276)
11 PLN02385 hydrolase; alpha/beta 46.9 37 0.00081 30.1 4.9 61 150-232 280-346 (349)
12 TIGR03611 RutD pyrimidine util 44.9 31 0.00068 27.9 3.9 37 150-188 199-239 (257)
13 TIGR03100 hydr1_PEP hydrolase, 43.8 23 0.00049 30.4 3.0 56 149-229 207-273 (274)
14 PF03713 DUF305: Domain of unk 41.5 32 0.0007 26.8 3.3 25 212-236 37-61 (151)
15 PLN02298 hydrolase, alpha/beta 39.7 51 0.0011 28.8 4.6 63 150-234 252-320 (330)
16 PRK10162 acetyl esterase; Prov 36.4 58 0.0013 28.7 4.5 42 150-191 249-294 (318)
17 KOG3043 Predicted hydrolase re 35.8 1.2E+02 0.0026 26.0 5.9 68 151-231 166-240 (242)
18 PLN02679 hydrolase, alpha/beta 34.1 66 0.0014 28.8 4.5 36 150-187 293-337 (360)
19 PRK11460 putative hydrolase; P 33.5 57 0.0012 27.3 3.7 54 149-224 148-209 (232)
20 PF00326 Peptidase_S9: Prolyl 32.8 53 0.0011 26.6 3.4 63 148-229 143-211 (213)
21 TIGR01249 pro_imino_pep_1 prol 32.2 55 0.0012 28.3 3.6 36 150-187 249-288 (306)
22 PLN02824 hydrolase, alpha/beta 30.2 73 0.0016 27.1 4.0 36 150-187 235-274 (294)
23 PLN02578 hydrolase 28.1 81 0.0018 28.1 4.0 35 150-187 297-335 (354)
24 cd06224 REM Guanine nucleotide 28.0 75 0.0016 23.2 3.3 23 211-233 61-83 (122)
25 COG4297 Uncharacterized protei 26.3 84 0.0018 24.7 3.2 20 208-228 129-148 (163)
26 PF00618 RasGEF_N: RasGEF N-te 25.2 89 0.0019 22.3 3.1 20 214-233 70-89 (104)
27 TIGR03044 PS_II_psb27 photosys 24.8 1.1E+02 0.0024 23.9 3.6 28 208-235 56-83 (135)
28 cd02173 ECT CTP:phosphoethanol 23.6 49 0.0011 26.1 1.5 16 150-165 2-17 (152)
29 TIGR01738 bioH putative pimelo 23.0 91 0.002 24.7 3.1 37 150-188 189-229 (245)
30 PRK00870 haloalkane dehalogena 21.1 1.1E+02 0.0023 26.3 3.3 36 150-187 240-281 (302)
31 PF13326 PSII_Pbs27: Photosyst 20.6 74 0.0016 25.1 2.0 27 208-234 68-94 (145)
32 TIGR02427 protocat_pcaD 3-oxoa 20.4 1.3E+02 0.0029 23.7 3.6 37 150-188 194-234 (251)
33 PRK06548 ribonuclease H; Provi 20.3 83 0.0018 25.2 2.2 20 220-239 73-92 (161)
No 1
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=100.00 E-value=2.5e-43 Score=318.42 Aligned_cols=204 Identities=32% Similarity=0.550 Sum_probs=165.3
Q ss_pred HHHHHHHHHHhhhccCCc-----------cccChhcccccCCChhHHHHHHHHHHHHhhCCC-CCCcCcCCh--hhcccC
Q 026328 13 FLYFLADAAVTAFQYGNP-----------DKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSF-GASVQTYNQ--KRLKNT 78 (240)
Q Consensus 13 F~~~l~~~~~~~~Qy~~~-----------~~~C~~l~~~~~~~~~~l~~~a~~~~~~~~~~~-~~~~~~~~~--~~~~~~ 78 (240)
|+..|...|++.+||... .++|+.|.+. +..+.+.++.++++.+.+... ++....|+. ..+++.
T Consensus 277 ff~nv~~~FqgvvQY~gd~~~~~~~~~~i~~~C~~l~n~--t~~d~v~~~~~~~~~~~~~~~~~c~~~~Y~~~i~~~~n~ 354 (514)
T KOG2182|consen 277 FFSNVYSNFQGVVQYSGDNSNATASGLGIPAMCDILNNK--TPGDDVVAVNKYMNWFNNGFGYGCLDNTYNGMISYLKNS 354 (514)
T ss_pred HHHHHHHhhhhheeecCCCCcccccccChhHHHHHhhcC--CCCchHHHHHHHHHHHHhccCCCcCCccHHHHHHHhhcc
Confidence 778899999999999643 4689999983 344678899998887765431 122233332 345554
Q ss_pred CCC--CCCCCccccccccccccccccCCCCCCccccccCchhHHHhhHhhcC-----CCCCCChhhhhhhcCC-CCCCCC
Q 026328 79 AVT--DQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFG-----EGIYPDVDSTNIYYGG-TKIAGS 150 (240)
Q Consensus 79 ~~~--~~~~~R~W~yQ~CtE~g~fqt~~~~~~~~s~~~~~~~~~~~C~~~Fg-----~~~~p~~~~~N~~yGG-~~~~~s 150 (240)
... ...++|+|+||||||||||||+++++.+|+..++++|+.++|+++|| ..+.+.|+.||.+||| .+++++
T Consensus 355 ~~~~~~~~a~r~W~wQtCtEfG~yQttds~~~iFgs~vp~~~fid~C~dlFG~~y~~~~i~~~V~~TN~~YGG~~~~~at 434 (514)
T KOG2182|consen 355 TEPGEDAAADRLWTWQTCTEFGYYQTTDSGNSIFGSTVPLDYFIDLCMDLFGAEYTAKGIDPNVDQTNYKYGGRDNYNAT 434 (514)
T ss_pred cCcCcccccchhhhhhhcccceeeEecCCCCccccCCCChHHHHHHHHHHhCchhhhhHHHHHHHHhhhhcCcccccCcc
Confidence 332 23567999999999999999999888899999999999999999999 3568889999999999 578999
Q ss_pred eEEEeCCCCCCcccccccCC-CCCCCeEEEEcCCCccccCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 026328 151 KIVFTNGSQDPWRHASKQTS-SPDMPSYLITCHNCGHGTDLRGCPQSPLTPEGDAQNCSAPDAVHKVRQQVIEKIDLWLS 229 (240)
Q Consensus 151 ni~ftnG~~DPW~~~~~~~~-~~~~~~~vi~~~~~~Hc~Dl~~~~~~~~~~~~~~~~~~dp~~l~~ar~~~~~~i~~Wl~ 229 (240)
||+|+||++||||.+|...+ ...+.+++|. |++||.||++. .+.|+++|+.||+.|.+.|++||.
T Consensus 435 nVvf~NG~~DPWh~LG~~~st~~~~~~~li~--gtsHCaDMyp~------------~~sD~~~L~~aR~~i~~~l~~wl~ 500 (514)
T KOG2182|consen 435 NVVFPNGSLDPWHALGLQNSTDSSVVSILIN--GTSHCADMYPA------------RDSDSPSLKAARNRIDQNLARWLH 500 (514)
T ss_pred eEEecCCCCCchhhhccccCCCCCceEEEec--CCccccccCCC------------CCCccHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998774 3345567775 99999999973 457999999999999999999998
Q ss_pred hcc
Q 026328 230 ECQ 232 (240)
Q Consensus 230 ~~~ 232 (240)
...
T Consensus 501 ~~~ 503 (514)
T KOG2182|consen 501 QQP 503 (514)
T ss_pred hcc
Confidence 764
No 2
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=100.00 E-value=4.6e-40 Score=303.30 Aligned_cols=192 Identities=34% Similarity=0.569 Sum_probs=111.0
Q ss_pred HHHHHHHHHHhhhccCCc------------cccChhcccccCCChhHHHHHHHHHHHHhhCCCCC---CcCcCChh----
Q 026328 13 FLYFLADAAVTAFQYGNP------------DKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGA---SVQTYNQK---- 73 (240)
Q Consensus 13 F~~~l~~~~~~~~Qy~~~------------~~~C~~l~~~~~~~~~~l~~~a~~~~~~~~~~~~~---~~~~~~~~---- 73 (240)
|+..+...++.++||+++ ..+|+.|++.. ..+.+.+++.+.+.+....... .+..++..
T Consensus 217 ~~~~~~~~~~~~~qy~~~~~~~~~~~~~~i~~~C~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (434)
T PF05577_consen 217 FFSSIADAFQGMVQYPYPGNFNSPLPAWPIRQLCDSLTNAS--WPDEVLRLAALAQWYNNFNTTCYSNSCADFDYNCFDS 294 (434)
T ss_dssp HHHHHHHHHHHHT--SS-EESSSEE-SSHHHHHHHHCHTSS--SHHHHHHHHHHHHHHCCCH-SCCHHCCC--SS-BSST
T ss_pred HHHHHHHHHHHHHhcCCCcccccCCCCcchHHHhhhhcccc--cCchhHHHHHHHHHHHHhcCccccccccccccccccC
Confidence 455667788889999542 57999998753 2233334444433321111000 11111100
Q ss_pred hcccCCCCCCCCCccccccccccccccccCCCCCCccccccCchhHHHhhHhhcCCC-----CCCChhhhhhhcCC-CCC
Q 026328 74 RLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFGEG-----IYPDVDSTNIYYGG-TKI 147 (240)
Q Consensus 74 ~~~~~~~~~~~~~R~W~yQ~CtE~g~fqt~~~~~~~~s~~~~~~~~~~~C~~~Fg~~-----~~p~~~~~N~~yGG-~~~ 147 (240)
...+..+....++|+|.||+|||||||||+++..+++++.++++++.++|+++||.. +.++++++|.+||| +++
T Consensus 295 ~~~~~~~~~~~~~R~W~wQtCtE~G~fqt~~~~~~l~~~~~~l~~~~~~C~~~Fg~~~~~~~i~~~~~~tN~~YGG~~~~ 374 (434)
T PF05577_consen 295 TYDDSSFDDNADDRQWLWQTCTEFGYFQTADGPNSLFSRLVNLDYYQDQCQDVFGPGPNPESIPPNVDWTNNYYGGWWNP 374 (434)
T ss_dssp T---SS----HHHHHHHHHHCCT-B----B-SSSSSS-B---HHHHHHHHHHHHS----T------TCHHHHHHTTT--T
T ss_pred CCCcccccccccchhhHHHhhhhccceeccCCCCCcccCCCCHHHHHHHHHHHhCCCccccccccchhHHhheeCccccC
Confidence 111111111234799999999999999999887889999999999999999999854 35579999999999 889
Q ss_pred CCCeEEEeCCCCCCcccccccCC-CCCCCeEEEEcCCCccccCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 026328 148 AGSKIVFTNGSQDPWRHASKQTS-SPDMPSYLITCHNCGHGTDLRGCPQSPLTPEGDAQNCSAPDAVHKVRQQV 220 (240)
Q Consensus 148 ~~sni~ftnG~~DPW~~~~~~~~-~~~~~~~vi~~~~~~Hc~Dl~~~~~~~~~~~~~~~~~~dp~~l~~ar~~~ 220 (240)
+++||+||||++||||.+|+.+. +..+++++|+ |++||.||+. +++.||++|++||++|
T Consensus 375 ~~tnviFtNG~~DPW~~lgv~~~~~~~~~~~~I~--g~~Hc~Dl~~------------~~~~D~~~l~~aR~~i 434 (434)
T PF05577_consen 375 NATNVIFTNGELDPWRALGVTSDSSDSVPAIVIP--GGAHCSDLYP------------PNPNDPPELKAARQRI 434 (434)
T ss_dssp T--SEEEEEETT-CCGGGS--S-SSSSEEEEEET--T--TTGGGS---------------TT--HHHHHHHHH-
T ss_pred CCCeEEeeCCCCCCcccccCCCCCCCCcccEEEC--CCeeeccccC------------CCCCCCHHHHHHHhhC
Confidence 99999999999999999998763 5677888886 9999999997 4668999999999987
No 3
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=100.00 E-value=2.2e-38 Score=280.16 Aligned_cols=215 Identities=25% Similarity=0.385 Sum_probs=174.5
Q ss_pred CCC-CcCC-CchHHHHHHHHHHH--hhhccCCc------------cccChhcccccCCChhHHHHHHHHHHHHhhCCCCC
Q 026328 2 FDA-AELE-IEGDFLYFLADAAV--TAFQYGNP------------DKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGA 65 (240)
Q Consensus 2 Fg~-~~l~-~~~dF~~~l~~~~~--~~~Qy~~~------------~~~C~~l~~~~~~~~~~l~~~a~~~~~~~~~~~~~ 65 (240)
|.+ ..|. +..++...|.+++. .||+|.++ +.+|..|.....+..++|+++.+.++.+||++ +
T Consensus 257 f~lc~~ln~d~~~l~d~l~ea~~ylAMVdYPy~t~Fl~pLPa~PV~~~C~~i~~~~~~~~~ll~~i~a~~~~yyNyt--g 334 (492)
T KOG2183|consen 257 FKLCKPLNDDIGDLKDYLREAYEYLAMVDYPYPTSFLAPLPAWPVKVVCKYINAPGPNDSDLLDRIFAAVNLYYNYT--G 334 (492)
T ss_pred hhhcccccccHHHHHHHHHHHHHHHHHhcCCCCccccCcCCCCcHHHHHHHhccCCCChHHHHHHHHHHhhheeccC--C
Confidence 443 5555 33456667775554 46778764 57999998765455789999999999999875 5
Q ss_pred CcCcCChhhcccCCCCCCCCCccccccccccccccccCCCC-CCccccccCchhHHHhhHhhcCCCCCCChhhhhhhcCC
Q 026328 66 SVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPAN-DSVRSSKVDTRYHLDLCKNVFGEGIYPDVDSTNIYYGG 144 (240)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~R~W~yQ~CtE~g~fqt~~~~-~~~~s~~~~~~~~~~~C~~~Fg~~~~p~~~~~N~~yGG 144 (240)
+..|||.. +.+.....+.|.|.||+|||+.+..+++.. .|+....+|.+.+++.|...|| +.|+++|++.+|||
T Consensus 335 ~~~C~d~s---d~t~~~~~d~~gW~~QaCtEmVMp~~~ng~~~mf~~~~fn~~~y~e~C~~~~~--v~prP~wi~t~fgg 409 (492)
T KOG2183|consen 335 SEKCYDIS---DPTYGSGLDDLGWPWQACTEMVMPMCSNGVDDMFPDCPFNSESYQEGCMQTFG--VTPRPKWITTEFGG 409 (492)
T ss_pred Ccchhccc---cccCCCCCCcCCCchhhhhhhhhccccCCCcccCCCCCCCHHHHHHHHHHhcC--CCCCCcceehhhcc
Confidence 67799864 333334566899999999999998776654 6777889999999999999998 89999999999999
Q ss_pred CCC-CCCeEEEeCCCCCCcccccccCC-CCCCCeEEEEcCCCccccCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 026328 145 TKI-AGSKIVFTNGSQDPWRHASKQTS-SPDMPSYLITCHNCGHGTDLRGCPQSPLTPEGDAQNCSAPDAVHKVRQQVIE 222 (240)
Q Consensus 145 ~~~-~~sni~ftnG~~DPW~~~~~~~~-~~~~~~~vi~~~~~~Hc~Dl~~~~~~~~~~~~~~~~~~dp~~l~~ar~~~~~ 222 (240)
.++ ..|||||+||.+|||+..|+++. +..+.+++|+ +|+||.|||. +++.||++|+++|++|++
T Consensus 410 ~~l~~~SNiIFSNG~LDPWSGGGV~~nis~svvav~~k--~GAHHlDLR~------------~~~~DP~~v~~aR~~Ei~ 475 (492)
T KOG2183|consen 410 ADLSAFSNIIFSNGLLDPWSGGGVLKNISDSVVAVTIK--EGAHHLDLRA------------SHPEDPESVVEARELEIQ 475 (492)
T ss_pred ccchhhcceeeeCCCcCCccCcCeeccccCcEEEEEec--CCccceeccC------------CCCCCcHHHHHHHHHHHH
Confidence 888 45899999999999999999874 5566667776 9999999997 577999999999999999
Q ss_pred HHHHHHhhccccCCC
Q 026328 223 KIDLWLSECQSVGWR 237 (240)
Q Consensus 223 ~i~~Wl~~~~~~~~~ 237 (240)
+|++||++++...++
T Consensus 476 iI~~WI~~~~r~~~~ 490 (492)
T KOG2183|consen 476 IIKKWIKEFYRVLGE 490 (492)
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999998876543
No 4
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=98.66 E-value=2.8e-07 Score=83.33 Aligned_cols=173 Identities=18% Similarity=0.416 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHHhhhccCCccccChhcccccCCChhHHHHHHHHHHHHhhCCCCCCcCcCChhhcccCCCCCCCCCcccc
Q 026328 11 GDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGASVQTYNQKRLKNTAVTDQSADRLWW 90 (240)
Q Consensus 11 ~dF~~~l~~~~~~~~Qy~~~~~~C~~l~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~W~ 90 (240)
.-|-+.+-+..-..|||+... -|+.|-....+..+ +.+..++... ..+..| ++... ....+.+
T Consensus 232 ra~E~~VLe~~faFWQy~~~~-~C~~IP~~~~~Asd--deL~~~l~~i------sg~s~y-----sDq~l---~~y~pyy 294 (448)
T PF05576_consen 232 RAYEYAVLEYPFAFWQYGTPA-DCASIPADAKTASD--DELFDFLDAI------SGFSFY-----SDQGL---EPYTPYY 294 (448)
T ss_pred HHHHHHHhhhhhHhhccCCcc-chhcCCCCcCCCCH--HHHHHHHHhh------cCcccc-----ccCCc---ccccChH
Confidence 345555443333789999554 69887542111111 2222222211 012222 22211 2346999
Q ss_pred ccccccccccccCCCCCCccccccCchhHHHhhHhhc-CCCC----CCC-hhhhhhhcCCCCCCCCeEEEeCCCCCCccc
Q 026328 91 FQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVF-GEGI----YPD-VDSTNIYYGGTKIAGSKIVFTNGSQDPWRH 164 (240)
Q Consensus 91 yQ~CtE~g~fqt~~~~~~~~s~~~~~~~~~~~C~~~F-g~~~----~p~-~~~~N~~yGG~~~~~sni~ftnG~~DPW~~ 164 (240)
||.-||+||+...-+ .+...++...+. =...| |.++ .|. ...+..+ ..-+++|+||++|+.|||.+
T Consensus 295 yQA~teLG~p~~~~~--hl~~~ll~~g~~---~~r~fvP~~i~m~Fdp~am~dI~~W---vr~~~~rmlFVYG~nDPW~A 366 (448)
T PF05576_consen 295 YQAGTELGYPGYDTP--HLRKKLLRYGYQ---PPRNFVPRDIPMKFDPTAMRDIDRW---VRNNGPRMLFVYGENDPWSA 366 (448)
T ss_pred HHHHhhcCCCCCCCc--chhccccccCCC---CcccCCCCCCCCCcCHHHHHHHHHH---HHhCCCeEEEEeCCCCCccc
Confidence 999999999766321 121222222111 12333 2222 111 2222221 13378999999999999999
Q ss_pred ccccC--CCCCCCeEEEEcCCCccccCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 026328 165 ASKQT--SSPDMPSYLITCHNCGHGTDLRGCPQSPLTPEGDAQNCSAPDAVHKVRQQVIEKIDLWLS 229 (240)
Q Consensus 165 ~~~~~--~~~~~~~~vi~~~~~~Hc~Dl~~~~~~~~~~~~~~~~~~dp~~l~~ar~~~~~~i~~Wl~ 229 (240)
.++.- ...+.-+++.| |+.|..++.++ | ...|.+.++.|.+|-.
T Consensus 367 ~~f~l~~g~~ds~v~~~P--ggnHga~I~~L----------------~---~~~r~~a~a~l~~WaG 412 (448)
T PF05576_consen 367 EPFRLGKGKRDSYVFTAP--GGNHGARIAGL----------------P---EAERAEATARLRRWAG 412 (448)
T ss_pred CccccCCCCcceEEEEcC--CCcccccccCC----------------C---HHHHHHHHHHHHHHcC
Confidence 98764 34555666775 99999998863 2 3468889999999975
No 5
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=71.05 E-value=2.9 Score=37.27 Aligned_cols=30 Identities=30% Similarity=0.364 Sum_probs=26.2
Q ss_pred hhhhhhhcCCCCCCCCeEEEeCCCCCCcccc
Q 026328 135 VDSTNIYYGGTKIAGSKIVFTNGSQDPWRHA 165 (240)
Q Consensus 135 ~~~~N~~yGG~~~~~sni~ftnG~~DPW~~~ 165 (240)
+..+|++|| ||+.+.||..|||++.-.-.+
T Consensus 84 a~~l~~~yg-wnit~~NIalTnGSQs~fFYl 113 (417)
T COG3977 84 AKMLRREYG-WNITAQNIALTNGSQSAFFYL 113 (417)
T ss_pred HHHHHHHhC-CCCccceeeecCCccchHHHH
Confidence 677899987 999999999999999887654
No 6
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=69.89 E-value=4.2 Score=33.53 Aligned_cols=66 Identities=14% Similarity=0.168 Sum_probs=32.9
Q ss_pred CeEEEeCCCCCCccccccc----C-C-CCCCCeEEEEcCCCccccCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 026328 150 SKIVFTNGSQDPWRHASKQ----T-S-SPDMPSYLITCHNCGHGTDLRGCPQSPLTPEGDAQNCSAPDAVHKVRQQVIEK 223 (240)
Q Consensus 150 sni~ftnG~~DPW~~~~~~----~-~-~~~~~~~vi~~~~~~Hc~Dl~~~~~~~~~~~~~~~~~~dp~~l~~ar~~~~~~ 223 (240)
.-+++..|+.||+...... + . ....++-+.-.+|+.|..+.... ...++..-.++.++++++
T Consensus 146 ~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~~------------~~~~~~aa~~a~~~~~~f 213 (218)
T PF01738_consen 146 APVLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYPGAGHGFANPSR------------PPYDPAAAEDAWQRTLAF 213 (218)
T ss_dssp S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTTS------------TT--HHHHHHHHHHHHHH
T ss_pred CCEeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECCCCcccccCCCC------------cccCHHHHHHHHHHHHHH
Confidence 3589999999999886521 1 1 12233333334689998876641 124555555566665555
Q ss_pred HHHH
Q 026328 224 IDLW 227 (240)
Q Consensus 224 i~~W 227 (240)
+++.
T Consensus 214 f~~~ 217 (218)
T PF01738_consen 214 FKRH 217 (218)
T ss_dssp HCC-
T ss_pred HHhc
Confidence 5443
No 7
>COG3544 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.91 E-value=10 Score=31.07 Aligned_cols=23 Identities=13% Similarity=0.462 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc
Q 026328 211 DAVHKVRQQVIEKIDLWLSECQS 233 (240)
Q Consensus 211 ~~l~~ar~~~~~~i~~Wl~~~~~ 233 (240)
++|.++++.+++.+++||+.|+.
T Consensus 167 e~II~aQ~aEI~qM~qwl~~~~~ 189 (190)
T COG3544 167 EQIIEAQEAEINQMEQWLKAWYG 189 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHccC
Confidence 35778899999999999999875
No 8
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=56.53 E-value=16 Score=32.59 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=28.4
Q ss_pred CeEEEeCCCCCCcccccc----cCCCCCCCeEEEEcCCCccccCC
Q 026328 150 SKIVFTNGSQDPWRHASK----QTSSPDMPSYLITCHNCGHGTDL 190 (240)
Q Consensus 150 sni~ftnG~~DPW~~~~~----~~~~~~~~~~vi~~~~~~Hc~Dl 190 (240)
-.|+++.|+.|||-+.-. ....++...++|+ +++||.=+
T Consensus 265 ~pvlii~G~~D~~~p~~~~~~~~~~~pn~~~~~I~--~~gH~~h~ 307 (326)
T KOG1454|consen 265 CPVLIIWGDKDQIVPLELAEELKKKLPNAELVEIP--GAGHLPHL 307 (326)
T ss_pred CceEEEEcCcCCccCHHHHHHHHhhCCCceEEEeC--CCCccccc
Confidence 349999999999988652 1223666678886 89999443
No 9
>PRK10673 acyl-CoA esterase; Provisional
Probab=56.12 E-value=14 Score=30.56 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=25.2
Q ss_pred CeEEEeCCCCCCcccccccC----CCCCCCeEEEEcCCCcccc
Q 026328 150 SKIVFTNGSQDPWRHASKQT----SSPDMPSYLITCHNCGHGT 188 (240)
Q Consensus 150 sni~ftnG~~DPW~~~~~~~----~~~~~~~~vi~~~~~~Hc~ 188 (240)
--++++.|+.||+......+ ..++....+++ +++|..
T Consensus 196 ~P~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~--~~gH~~ 236 (255)
T PRK10673 196 HPALFIRGGNSPYVTEAYRDDLLAQFPQARAHVIA--GAGHWV 236 (255)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHhCCCcEEEEeC--CCCCee
Confidence 36999999999997654321 23455556665 899964
No 10
>PHA02857 monoglyceride lipase; Provisional
Probab=48.41 E-value=37 Score=28.57 Aligned_cols=58 Identities=14% Similarity=0.310 Sum_probs=37.8
Q ss_pred CeEEEeCCCCCCccccccc----C-CCCCCCeEEEEcCCCccccCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 026328 150 SKIVFTNGSQDPWRHASKQ----T-SSPDMPSYLITCHNCGHGTDLRGCPQSPLTPEGDAQNCSAPDAVHKVRQQVIEKI 224 (240)
Q Consensus 150 sni~ftnG~~DPW~~~~~~----~-~~~~~~~~vi~~~~~~Hc~Dl~~~~~~~~~~~~~~~~~~dp~~l~~ar~~~~~~i 224 (240)
--|+++.|+.|++-+.... + ..++....+++ +++|..=+ +..+.|+++.+.|
T Consensus 210 ~Pvliv~G~~D~i~~~~~~~~l~~~~~~~~~~~~~~--~~gH~~~~---------------------e~~~~~~~~~~~~ 266 (276)
T PHA02857 210 TPILILQGTNNEISDVSGAYYFMQHANCNREIKIYE--GAKHHLHK---------------------ETDEVKKSVMKEI 266 (276)
T ss_pred CCEEEEecCCCCcCChHHHHHHHHHccCCceEEEeC--CCcccccC---------------------CchhHHHHHHHHH
Confidence 4689999999998764321 1 11233445665 88985211 1135688889999
Q ss_pred HHHHhh
Q 026328 225 DLWLSE 230 (240)
Q Consensus 225 ~~Wl~~ 230 (240)
..||..
T Consensus 267 ~~~l~~ 272 (276)
T PHA02857 267 ETWIFN 272 (276)
T ss_pred HHHHHH
Confidence 999976
No 11
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=46.87 E-value=37 Score=30.07 Aligned_cols=61 Identities=25% Similarity=0.321 Sum_probs=38.4
Q ss_pred CeEEEeCCCCCCccccccc----C--CCCCCCeEEEEcCCCccccCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 026328 150 SKIVFTNGSQDPWRHASKQ----T--SSPDMPSYLITCHNCGHGTDLRGCPQSPLTPEGDAQNCSAPDAVHKVRQQVIEK 223 (240)
Q Consensus 150 sni~ftnG~~DPW~~~~~~----~--~~~~~~~~vi~~~~~~Hc~Dl~~~~~~~~~~~~~~~~~~dp~~l~~ar~~~~~~ 223 (240)
--+++++|+.|+....... + .+++...++++ +++|+. .. .+|+ +.++++.+.
T Consensus 280 ~P~Lii~G~~D~vv~~~~~~~l~~~~~~~~~~l~~i~--~~gH~l--~~---------------e~p~---~~~~~v~~~ 337 (349)
T PLN02385 280 LPLLILHGEADKVTDPSVSKFLYEKASSSDKKLKLYE--DAYHSI--LE---------------GEPD---EMIFQVLDD 337 (349)
T ss_pred CCEEEEEeCCCCccChHHHHHHHHHcCCCCceEEEeC--CCeeec--cc---------------CCCh---hhHHHHHHH
Confidence 5689999999998765421 1 12344456665 888863 21 2343 235667788
Q ss_pred HHHHHhhcc
Q 026328 224 IDLWLSECQ 232 (240)
Q Consensus 224 i~~Wl~~~~ 232 (240)
|..||.+..
T Consensus 338 i~~wL~~~~ 346 (349)
T PLN02385 338 IISWLDSHS 346 (349)
T ss_pred HHHHHHHhc
Confidence 889997653
No 12
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=44.90 E-value=31 Score=27.91 Aligned_cols=37 Identities=14% Similarity=0.256 Sum_probs=24.4
Q ss_pred CeEEEeCCCCCCccccccc----CCCCCCCeEEEEcCCCcccc
Q 026328 150 SKIVFTNGSQDPWRHASKQ----TSSPDMPSYLITCHNCGHGT 188 (240)
Q Consensus 150 sni~ftnG~~DPW~~~~~~----~~~~~~~~~vi~~~~~~Hc~ 188 (240)
-.+++++|+.|++.+.... +..++...++++ +++|..
T Consensus 199 ~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~--~~gH~~ 239 (257)
T TIGR03611 199 HPVLLIANRDDMLVPYTQSLRLAAALPNAQLKLLP--YGGHAS 239 (257)
T ss_pred ccEEEEecCcCcccCHHHHHHHHHhcCCceEEEEC--CCCCCc
Confidence 4699999999999764321 122344456665 888874
No 13
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=43.77 E-value=23 Score=30.43 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=36.0
Q ss_pred CCeEEEeCCCCCCcccccc------c-----CCCCCCCeEEEEcCCCccccCCcCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 026328 149 GSKIVFTNGSQDPWRHASK------Q-----TSSPDMPSYLITCHNCGHGTDLRGCPQSPLTPEGDAQNCSAPDAVHKVR 217 (240)
Q Consensus 149 ~sni~ftnG~~DPW~~~~~------~-----~~~~~~~~~vi~~~~~~Hc~Dl~~~~~~~~~~~~~~~~~~dp~~l~~ar 217 (240)
.--+++..|..||+...-. . ..++......++ ++.|+.- ...+|
T Consensus 207 ~~P~ll~~g~~D~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~--~~~H~l~-----------------------~e~~~ 261 (274)
T TIGR03100 207 QGPVLFILSGNDLTAQEFADSVLGEPAWRGALEDPGIERVEID--GADHTFS-----------------------DRVWR 261 (274)
T ss_pred CCcEEEEEcCcchhHHHHHHHhccChhhHHHhhcCCeEEEecC--CCCcccc-----------------------cHHHH
Confidence 4578888899999854211 0 012444445554 8999521 13578
Q ss_pred HHHHHHHHHHHh
Q 026328 218 QQVIEKIDLWLS 229 (240)
Q Consensus 218 ~~~~~~i~~Wl~ 229 (240)
+++.+.|.+||.
T Consensus 262 ~~v~~~i~~wL~ 273 (274)
T TIGR03100 262 EWVAARTTEWLR 273 (274)
T ss_pred HHHHHHHHHHHh
Confidence 889999999985
No 14
>PF03713 DUF305: Domain of unknown function (DUF305); InterPro: IPR005183 A domain that is found in small family of bacterial secreted proteins with no known function. It ia also found in Paramecium bursaria Chlorella virus 1 (PBCV-1). This domain is short and found in one or two copies. The domain has a conserved HH motif that may be functionally important.; PDB: 2QF9_B 3BT5_A.
Probab=41.46 E-value=32 Score=26.77 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCC
Q 026328 212 AVHKVRQQVIEKIDLWLSECQSVGW 236 (240)
Q Consensus 212 ~l~~ar~~~~~~i~~Wl~~~~~~~~ 236 (240)
.|+..+..++..++.||..|..+..
T Consensus 37 ~I~~~Q~~ei~~m~~wl~~~~~~~~ 61 (151)
T PF03713_consen 37 QIIAAQQAEIAQMQAWLQSWGGPPP 61 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT--SS
T ss_pred HHHHHHHHHHHHHHHHhhhchhhhc
Confidence 4677888999999999999977644
No 15
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=39.71 E-value=51 Score=28.79 Aligned_cols=63 Identities=21% Similarity=0.201 Sum_probs=37.9
Q ss_pred CeEEEeCCCCCCcccccccC------CCCCCCeEEEEcCCCccccCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 026328 150 SKIVFTNGSQDPWRHASKQT------SSPDMPSYLITCHNCGHGTDLRGCPQSPLTPEGDAQNCSAPDAVHKVRQQVIEK 223 (240)
Q Consensus 150 sni~ftnG~~DPW~~~~~~~------~~~~~~~~vi~~~~~~Hc~Dl~~~~~~~~~~~~~~~~~~dp~~l~~ar~~~~~~ 223 (240)
--+++++|..|++-+..... ..+....++++ |+.|..=+ .+|+ ..++.+.+.
T Consensus 252 ~PvLii~G~~D~ivp~~~~~~l~~~i~~~~~~l~~~~--~a~H~~~~-----------------e~pd---~~~~~~~~~ 309 (330)
T PLN02298 252 IPFIVLHGSADVVTDPDVSRALYEEAKSEDKTIKIYD--GMMHSLLF-----------------GEPD---ENIEIVRRD 309 (330)
T ss_pred CCEEEEecCCCCCCCHHHHHHHHHHhccCCceEEEcC--CcEeeeec-----------------CCCH---HHHHHHHHH
Confidence 46999999999998754211 12233445554 77885322 1232 345667777
Q ss_pred HHHHHhhcccc
Q 026328 224 IDLWLSECQSV 234 (240)
Q Consensus 224 i~~Wl~~~~~~ 234 (240)
|.+||...-.+
T Consensus 310 i~~fl~~~~~~ 320 (330)
T PLN02298 310 ILSWLNERCTG 320 (330)
T ss_pred HHHHHHHhccC
Confidence 77888765443
No 16
>PRK10162 acetyl esterase; Provisional
Probab=36.40 E-value=58 Score=28.66 Aligned_cols=42 Identities=14% Similarity=0.051 Sum_probs=26.1
Q ss_pred CeEEEeCCCCCCccccccc---CC-CCCCCeEEEEcCCCccccCCc
Q 026328 150 SKIVFTNGSQDPWRHASKQ---TS-SPDMPSYLITCHNCGHGTDLR 191 (240)
Q Consensus 150 sni~ftnG~~DPW~~~~~~---~~-~~~~~~~vi~~~~~~Hc~Dl~ 191 (240)
..++++.|+.||.+.-+.. .. ...+++-++..+|..|.....
T Consensus 249 Pp~~i~~g~~D~L~de~~~~~~~L~~aGv~v~~~~~~g~~H~f~~~ 294 (318)
T PRK10162 249 PPCFIAGAEFDPLLDDSRLLYQTLAAHQQPCEFKLYPGTLHAFLHY 294 (318)
T ss_pred CCeEEEecCCCcCcChHHHHHHHHHHcCCCEEEEEECCCceehhhc
Confidence 4789999999999875532 00 112333333345899986654
No 17
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=35.83 E-value=1.2e+02 Score=26.01 Aligned_cols=68 Identities=18% Similarity=0.223 Sum_probs=42.9
Q ss_pred eEEEeCCCCCCccccccc-------CCCCCCCeEEEEcCCCccccCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 026328 151 KIVFTNGSQDPWRHASKQ-------TSSPDMPSYLITCHNCGHGTDLRGCPQSPLTPEGDAQNCSAPDAVHKVRQQVIEK 223 (240)
Q Consensus 151 ni~ftnG~~DPW~~~~~~-------~~~~~~~~~vi~~~~~~Hc~Dl~~~~~~~~~~~~~~~~~~dp~~l~~ar~~~~~~ 223 (240)
=|+|.-|+.|+-.+...+ +.++...+.+--.+|-+|.+=-+- ...+.|+.+++-++..+.
T Consensus 166 Pilfl~ae~D~~~p~~~v~~~ee~lk~~~~~~~~v~~f~g~~HGf~~~r-------------~~~~~Ped~~~~eea~~~ 232 (242)
T KOG3043|consen 166 PILFLFAELDEDVPPKDVKAWEEKLKENPAVGSQVKTFSGVGHGFVARR-------------ANISSPEDKKAAEEAYQR 232 (242)
T ss_pred CEEEEeecccccCCHHHHHHHHHHHhcCcccceeEEEcCCccchhhhhc-------------cCCCChhHHHHHHHHHHH
Confidence 489999999999776532 223333333333457777654321 113345667888888888
Q ss_pred HHHHHhhc
Q 026328 224 IDLWLSEC 231 (240)
Q Consensus 224 i~~Wl~~~ 231 (240)
+..|++++
T Consensus 233 ~~~Wf~~y 240 (242)
T KOG3043|consen 233 FISWFKHY 240 (242)
T ss_pred HHHHHHHh
Confidence 88898865
No 18
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=34.06 E-value=66 Score=28.80 Aligned_cols=36 Identities=25% Similarity=0.495 Sum_probs=23.1
Q ss_pred CeEEEeCCCCCCcccccc------c---CCCCCCCeEEEEcCCCccc
Q 026328 150 SKIVFTNGSQDPWRHASK------Q---TSSPDMPSYLITCHNCGHG 187 (240)
Q Consensus 150 sni~ftnG~~DPW~~~~~------~---~~~~~~~~~vi~~~~~~Hc 187 (240)
--++++.|+.||..+... . +.-++...++|+ +++|+
T Consensus 293 ~PtLii~G~~D~~~p~~~~~~~~~~~l~~~ip~~~l~~i~--~aGH~ 337 (360)
T PLN02679 293 LPILVLWGDQDPFTPLDGPVGKYFSSLPSQLPNVTLYVLE--GVGHC 337 (360)
T ss_pred CCEEEEEeCCCCCcCchhhHHHHHHhhhccCCceEEEEcC--CCCCC
Confidence 358999999999876531 0 112333445665 89996
No 19
>PRK11460 putative hydrolase; Provisional
Probab=33.46 E-value=57 Score=27.29 Aligned_cols=54 Identities=15% Similarity=0.294 Sum_probs=33.8
Q ss_pred CCeEEEeCCCCCCccccccc-------C-CCCCCCeEEEEcCCCccccCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 026328 149 GSKIVFTNGSQDPWRHASKQ-------T-SSPDMPSYLITCHNCGHGTDLRGCPQSPLTPEGDAQNCSAPDAVHKVRQQV 220 (240)
Q Consensus 149 ~sni~ftnG~~DPW~~~~~~-------~-~~~~~~~~vi~~~~~~Hc~Dl~~~~~~~~~~~~~~~~~~dp~~l~~ar~~~ 220 (240)
...|++.+|+.||+-+.... + ........++ +++.|.. .++++..+++.+
T Consensus 148 ~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~--~~~gH~i--------------------~~~~~~~~~~~l 205 (232)
T PRK11460 148 ATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIV--EDLGHAI--------------------DPRLMQFALDRL 205 (232)
T ss_pred CCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEE--CCCCCCC--------------------CHHHHHHHHHHH
Confidence 46799999999999875421 1 1112222334 4788852 256777777777
Q ss_pred HHHH
Q 026328 221 IEKI 224 (240)
Q Consensus 221 ~~~i 224 (240)
.++|
T Consensus 206 ~~~l 209 (232)
T PRK11460 206 RYTV 209 (232)
T ss_pred HHHc
Confidence 7666
No 20
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=32.76 E-value=53 Score=26.63 Aligned_cols=63 Identities=19% Similarity=0.375 Sum_probs=33.4
Q ss_pred CCCeEEEeCCCCCCccccccc-----C-CCCCCCeEEEEcCCCccccCCcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 026328 148 AGSKIVFTNGSQDPWRHASKQ-----T-SSPDMPSYLITCHNCGHGTDLRGCPQSPLTPEGDAQNCSAPDAVHKVRQQVI 221 (240)
Q Consensus 148 ~~sni~ftnG~~DPW~~~~~~-----~-~~~~~~~~vi~~~~~~Hc~Dl~~~~~~~~~~~~~~~~~~dp~~l~~ar~~~~ 221 (240)
...-|++++|+.|+=-+..-. . .....++.++..|++.|... .+..-++..+++.
T Consensus 143 ~~~P~li~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH~~~-------------------~~~~~~~~~~~~~ 203 (213)
T PF00326_consen 143 IKPPVLIIHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGHGFG-------------------NPENRRDWYERIL 203 (213)
T ss_dssp GGSEEEEEEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SSSTT-------------------SHHHHHHHHHHHH
T ss_pred CCCCEEEEccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCC-------------------CchhHHHHHHHHH
Confidence 356799999999985432210 0 01233344443468999322 2333345666666
Q ss_pred HHHHHHHh
Q 026328 222 EKIDLWLS 229 (240)
Q Consensus 222 ~~i~~Wl~ 229 (240)
++++++|+
T Consensus 204 ~f~~~~l~ 211 (213)
T PF00326_consen 204 DFFDKYLK 211 (213)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 66666654
No 21
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=32.21 E-value=55 Score=28.33 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=24.2
Q ss_pred CeEEEeCCCCCCccccccc----CCCCCCCeEEEEcCCCccc
Q 026328 150 SKIVFTNGSQDPWRHASKQ----TSSPDMPSYLITCHNCGHG 187 (240)
Q Consensus 150 sni~ftnG~~DPW~~~~~~----~~~~~~~~~vi~~~~~~Hc 187 (240)
--+++++|+.|++.+.... ..-+....++++ +++|+
T Consensus 249 ~P~lii~g~~D~~~p~~~~~~~~~~~~~~~~~~~~--~~gH~ 288 (306)
T TIGR01249 249 IPTYIVHGRYDLCCPLQSAWALHKAFPEAELKVTN--NAGHS 288 (306)
T ss_pred CCeEEEecCCCCCCCHHHHHHHHHhCCCCEEEEEC--CCCCC
Confidence 3689999999999876432 112344455665 78897
No 22
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=30.18 E-value=73 Score=27.11 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=23.4
Q ss_pred CeEEEeCCCCCCccccccc----CCCCCCCeEEEEcCCCccc
Q 026328 150 SKIVFTNGSQDPWRHASKQ----TSSPDMPSYLITCHNCGHG 187 (240)
Q Consensus 150 sni~ftnG~~DPW~~~~~~----~~~~~~~~~vi~~~~~~Hc 187 (240)
--+++++|+.|++...... +..+....++|+ +++|.
T Consensus 235 ~P~lvi~G~~D~~~~~~~~~~~~~~~~~~~~~~i~--~~gH~ 274 (294)
T PLN02824 235 CPVLIAWGEKDPWEPVELGRAYANFDAVEDFIVLP--GVGHC 274 (294)
T ss_pred CCeEEEEecCCCCCChHHHHHHHhcCCccceEEeC--CCCCC
Confidence 3689999999999765321 112223345665 88996
No 23
>PLN02578 hydrolase
Probab=28.07 E-value=81 Score=28.06 Aligned_cols=35 Identities=26% Similarity=0.480 Sum_probs=21.4
Q ss_pred CeEEEeCCCCCCccccccc----CCCCCCCeEEEEcCCCccc
Q 026328 150 SKIVFTNGSQDPWRHASKQ----TSSPDMPSYLITCHNCGHG 187 (240)
Q Consensus 150 sni~ftnG~~DPW~~~~~~----~~~~~~~~~vi~~~~~~Hc 187 (240)
--+++++|+.|||-+.... +.-++...++| +++||
T Consensus 297 ~PvLiI~G~~D~~v~~~~~~~l~~~~p~a~l~~i---~~GH~ 335 (354)
T PLN02578 297 CPLLLLWGDLDPWVGPAKAEKIKAFYPDTTLVNL---QAGHC 335 (354)
T ss_pred CCEEEEEeCCCCCCCHHHHHHHHHhCCCCEEEEe---CCCCC
Confidence 3589999999999654321 11233333444 57887
No 24
>cd06224 REM Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately N-terminal to the RasGef (Cdc25-like) domain. REM contacts the GTPase and is assumed to participate in the catalytic activity of the exchange factor. Proteins with the REM domain include Sos1 and Sos2, which relay signals from tyrosine-kinase mediated signalling to Ras, RasGRP1-4, RasGRF1,2, CNrasGEF, and RAP-specific nucleotide exchange factors, to name a few.
Probab=27.97 E-value=75 Score=23.23 Aligned_cols=23 Identities=13% Similarity=0.406 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc
Q 026328 211 DAVHKVRQQVIEKIDLWLSECQS 233 (240)
Q Consensus 211 ~~l~~ar~~~~~~i~~Wl~~~~~ 233 (240)
.....+|.+++..|+.||.++..
T Consensus 61 ~~~~~~~~~v~~~l~~Wv~~~~~ 83 (122)
T cd06224 61 KKSKPIRLRVLNVLRTWVENYPY 83 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 34667899999999999998754
No 25
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=26.25 E-value=84 Score=24.71 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 026328 208 SAPDAVHKVRQQVIEKIDLWL 228 (240)
Q Consensus 208 ~dp~~l~~ar~~~~~~i~~Wl 228 (240)
..|.++.++|++|+. +-.|.
T Consensus 129 g~~t~~aear~~I~~-vplp~ 148 (163)
T COG4297 129 GAPTDLAEARARIKS-VPLPV 148 (163)
T ss_pred CCCccHHHHHHHHHc-CCCcc
Confidence 457788999999876 44443
No 26
>PF00618 RasGEF_N: RasGEF N-terminal motif; InterPro: IPR000651 The crystal structure of the guanine nucleotide exchange factor (GEF) region of human Sos1 complexes with Ras has been solved []. The structure consists of two distinct alpha helical structural domains: the N-terminal domain which seems to have a purely structural role and the C-terminal domain which is sufficient for catalytic activity and contains all residues that interact with Ras. A main feature of the catalytic domain is the protrusion of a helical hairpin important for the nucleotide-exchange mechanism. The N-terminal domain is likely to be important for the stability and correct placement of the hairpin structure. This entry represents a domain found in several GEF for Ras-like small GTPases which lies N-terminal to the RasGef (Cdc25-like) domain. ; GO: 0005085 guanyl-nucleotide exchange factor activity, 0051056 regulation of small GTPase mediated signal transduction, 0005622 intracellular; PDB: 3CF6_E 2BYV_E 1NVW_S 1BKD_S 1XDV_A 2II0_A 1NVU_S 1NVX_S 1NVV_S 1XD4_B ....
Probab=25.24 E-value=89 Score=22.34 Aligned_cols=20 Identities=15% Similarity=0.569 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 026328 214 HKVRQQVIEKIDLWLSECQS 233 (240)
Q Consensus 214 ~~ar~~~~~~i~~Wl~~~~~ 233 (240)
..+|.+++..|+.||+++..
T Consensus 70 ~~i~~rv~~~l~~Wi~~~~~ 89 (104)
T PF00618_consen 70 EPIRLRVLNVLKYWIENYPD 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHChH
Confidence 45788999999999998654
No 27
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=24.83 E-value=1.1e+02 Score=23.87 Aligned_cols=28 Identities=7% Similarity=0.087 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhccccC
Q 026328 208 SAPDAVHKVRQQVIEKIDLWLSECQSVG 235 (240)
Q Consensus 208 ~dp~~l~~ar~~~~~~i~~Wl~~~~~~~ 235 (240)
.|.|...+++....+.|..|+..|+...
T Consensus 56 kd~p~~~~a~~~ar~~indyvsrYRr~~ 83 (135)
T TIGR03044 56 DDDPNKSEAQAEARQLINDYISRYRRRP 83 (135)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4556677888888888888998886653
No 28
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=23.65 E-value=49 Score=26.13 Aligned_cols=16 Identities=25% Similarity=0.574 Sum_probs=14.3
Q ss_pred CeEEEeCCCCCCcccc
Q 026328 150 SKIVFTNGSQDPWRHA 165 (240)
Q Consensus 150 sni~ftnG~~DPW~~~ 165 (240)
.+|+|++|.+||-|..
T Consensus 2 ~~iv~~~G~FD~~H~G 17 (152)
T cd02173 2 DKVVYVDGAFDLFHIG 17 (152)
T ss_pred CeEEEEcCcccCCCHH
Confidence 5799999999999885
No 29
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=22.99 E-value=91 Score=24.68 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=24.0
Q ss_pred CeEEEeCCCCCCccccccc----CCCCCCCeEEEEcCCCcccc
Q 026328 150 SKIVFTNGSQDPWRHASKQ----TSSPDMPSYLITCHNCGHGT 188 (240)
Q Consensus 150 sni~ftnG~~DPW~~~~~~----~~~~~~~~~vi~~~~~~Hc~ 188 (240)
.-+++++|+.|+....... +.-++....+++ +++|..
T Consensus 189 ~Pvlii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~--~~gH~~ 229 (245)
T TIGR01738 189 VPFLRLYGYLDGLVPAKVVPYLDKLAPHSELYIFA--KAAHAP 229 (245)
T ss_pred CCEEEEeecCCcccCHHHHHHHHHhCCCCeEEEeC--CCCCCc
Confidence 3589999999998764321 122344455665 889973
No 30
>PRK00870 haloalkane dehalogenase; Provisional
Probab=21.10 E-value=1.1e+02 Score=26.27 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=22.3
Q ss_pred CeEEEeCCCCCCcccccccCC---CCCCC---eEEEEcCCCccc
Q 026328 150 SKIVFTNGSQDPWRHASKQTS---SPDMP---SYLITCHNCGHG 187 (240)
Q Consensus 150 sni~ftnG~~DPW~~~~~~~~---~~~~~---~~vi~~~~~~Hc 187 (240)
.=++++.|+.||......... -++.. ..+|+ +++|.
T Consensus 240 ~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~i~--~~gH~ 281 (302)
T PRK00870 240 KPFLTAFSDSDPITGGGDAILQKRIPGAAGQPHPTIK--GAGHF 281 (302)
T ss_pred CceEEEecCCCCcccCchHHHHhhcccccccceeeec--CCCcc
Confidence 458999999999876433211 12221 34565 88896
No 31
>PF13326 PSII_Pbs27: Photosystem II Pbs27; PDB: 2KND_A 2KMF_A 2Y6X_A.
Probab=20.58 E-value=74 Score=25.06 Aligned_cols=27 Identities=11% Similarity=0.063 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhcccc
Q 026328 208 SAPDAVHKVRQQVIEKIDLWLSECQSV 234 (240)
Q Consensus 208 ~dp~~l~~ar~~~~~~i~~Wl~~~~~~ 234 (240)
.|.+...++.+...+.|..||..|+..
T Consensus 68 ~d~~~~~~~~~~ar~~in~~vs~YRr~ 94 (145)
T PF13326_consen 68 KDDPNRAEAAAEARELINDYVSRYRRG 94 (145)
T ss_dssp TT-TTHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhCCC
Confidence 456677888899999999999998765
No 32
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=20.42 E-value=1.3e+02 Score=23.73 Aligned_cols=37 Identities=19% Similarity=0.103 Sum_probs=23.7
Q ss_pred CeEEEeCCCCCCccccccc----CCCCCCCeEEEEcCCCcccc
Q 026328 150 SKIVFTNGSQDPWRHASKQ----TSSPDMPSYLITCHNCGHGT 188 (240)
Q Consensus 150 sni~ftnG~~DPW~~~~~~----~~~~~~~~~vi~~~~~~Hc~ 188 (240)
--|++++|+.|+.-+.... +..+....++++ +++|+.
T Consensus 194 ~Pvlii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~--~~gH~~ 234 (251)
T TIGR02427 194 VPTLCIAGDQDGSTPPELVREIADLVPGARFAEIR--GAGHIP 234 (251)
T ss_pred CCeEEEEeccCCcCChHHHHHHHHhCCCceEEEEC--CCCCcc
Confidence 4689999999999764321 112333445665 888963
No 33
>PRK06548 ribonuclease H; Provisional
Probab=20.29 E-value=83 Score=25.20 Aligned_cols=20 Identities=25% Similarity=0.659 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhccccCCCCC
Q 026328 220 VIEKIDLWLSECQSVGWRSS 239 (240)
Q Consensus 220 ~~~~i~~Wl~~~~~~~~~~~ 239 (240)
+++.|.+||..|++++||-+
T Consensus 73 vi~~i~~W~~~Wk~~gWk~s 92 (161)
T PRK06548 73 VINSLTKWVYSWKMRKWRKA 92 (161)
T ss_pred HHHHHHHHHHHHHHCCCccc
Confidence 56778889999999888743
Done!