Query 026329
Match_columns 240
No_of_seqs 140 out of 801
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 10:59:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026329.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026329hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 97.4 0.00057 1.9E-08 51.3 7.4 71 88-160 34-105 (110)
2 2i68_A Protein EMRE; transmemb 97.0 0.0005 1.7E-08 53.8 3.8 70 89-160 35-105 (137)
3 2nml_A Enhancer of rudimentary 11.4 1.9E+02 0.0066 20.9 3.1 22 177-198 25-46 (104)
4 1vf5_F Protein PET M; photosyn 7.3 3.5E+02 0.012 15.5 2.5 17 142-158 4-20 (35)
5 1q90_M Cytochrome B6F complex 7.0 3.5E+02 0.012 15.9 2.5 17 142-158 5-21 (39)
6 1mzw_B U4/U6 snRNP 60KDA prote 4.7 1.4E+02 0.0047 16.7 -0.3 12 6-17 10-21 (31)
7 2ao6_B NCOA-2, 14-MER fragment 4.0 1.8E+02 0.0063 15.2 -0.1 7 101-107 15-21 (26)
8 2ekk_A UBA domain from E3 ubiq 3.0 8.6E+02 0.03 14.0 2.3 17 221-237 31-47 (47)
9 2kv5_A FST, putative uncharact 2.8 7.7E+02 0.026 13.9 1.7 14 145-158 8-21 (33)
10 2xtc_A F-box-like/WD repeat-co 2.7 6.2E+02 0.021 17.6 1.6 12 34-45 8-19 (90)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.36 E-value=0.00057 Score=51.28 Aligned_cols=71 Identities=11% Similarity=0.198 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhHHHHH-hhccchhhhhhhhhccccccccChhhHHHHHHHHHHHHheeccC
Q 026329 88 VKLSAVLMGSHGLTKGSLAFLNYPAQLMF-KSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 160 (240)
Q Consensus 88 ~~~s~~~~~~~~~~n~aL~yvs~p~~~l~-Ks~k~i~vmi~~~l~~g~~kry~~~~~~~v~~it~Gv~lf~~~~ 160 (240)
....+.+..+..+-+.|++++|.++---. .+..++.+.+.++++ ++++.++.|++.+.++..|+++....+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~--~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF--FGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 33345677777888899999999987665 999999999999999 899999999999999999999987755
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=96.99 E-value=0.0005 Score=53.79 Aligned_cols=70 Identities=10% Similarity=0.185 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCChhHHHHH-hhccchhhhhhhhhccccccccChhhHHHHHHHHHHHHheeccC
Q 026329 89 KLSAVLMGSHGLTKGSLAFLNYPAQLMF-KSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 160 (240)
Q Consensus 89 ~~s~~~~~~~~~~n~aL~yvs~p~~~l~-Ks~k~i~vmi~~~l~~g~~kry~~~~~~~v~~it~Gv~lf~~~~ 160 (240)
...+++..+..+-+.++++++.+.-... .+..++.+.++++++ ++++.++.++++++++.+|+++....+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~--lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF--FGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHH--HC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3345677788899999999999965555 999999999999999 899999999999999999999987755
No 3
>2nml_A Enhancer of rudimentary homolog; HEF2/ERH fold, pseudo beta barrel, interaction network, transcription, cell cycle; 1.55A {Homo sapiens} SCOP: d.330.1.1 PDB: 1w9g_A 1wwq_A 1wz7_A
Probab=11.42 E-value=1.9e+02 Score=20.87 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCCC
Q 026329 177 GALIMDSFLGNLQEAIFTMNPE 198 (240)
Q Consensus 177 ~sl~~dg~~~~~qe~~~~~~~~ 198 (240)
+..++||+...++|++.+.++.
T Consensus 25 v~~~megiC~iYE~~LK~~nP~ 46 (104)
T 2nml_A 25 VNECMEGVCKMYEEHLKRMNPN 46 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCC
Confidence 5789999999999999887763
No 4
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=7.25 E-value=3.5e+02 Score=15.54 Aligned_cols=17 Identities=41% Similarity=0.520 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHheec
Q 026329 142 EYVSALLLVVGLILFTL 158 (240)
Q Consensus 142 ~~~~v~~it~Gv~lf~~ 158 (240)
+++....++.|.+++.+
T Consensus 4 EIf~~A~i~~~LvLvGl 20 (35)
T 1vf5_F 4 EMLYAALLSFGLIFVGW 20 (35)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555443
No 5
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=7.03 E-value=3.5e+02 Score=15.91 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHheec
Q 026329 142 EYVSALLLVVGLILFTL 158 (240)
Q Consensus 142 ~~~~v~~it~Gv~lf~~ 158 (240)
+++....++.|++++.+
T Consensus 5 EIf~~A~i~~~L~LvGl 21 (39)
T 1q90_M 5 FIAGTALTMVGMTLVGL 21 (39)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555566666655443
No 6
>1mzw_B U4/U6 snRNP 60KDA protein; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
Probab=4.67 E-value=1.4e+02 Score=16.72 Aligned_cols=12 Identities=25% Similarity=0.382 Sum_probs=8.4
Q ss_pred ccceeEEeeecC
Q 026329 6 EQTRSLFGISLT 17 (240)
Q Consensus 6 ~~~~~~~g~~~~ 17 (240)
.+|+++||.+-.
T Consensus 10 gePi~lFGE~~~ 21 (31)
T 1mzw_B 10 GEPITLFGEGPA 21 (31)
T ss_dssp TCCSEETTCCHH
T ss_pred CCCeeecCCChH
Confidence 477888887644
No 7
>2ao6_B NCOA-2, 14-MER fragment of nuclear receptor coactivator 2; , human androgen receptor ligand binding domain; HET: R18; 1.89A {Homo sapiens}
Probab=4.01 E-value=1.8e+02 Score=15.24 Aligned_cols=7 Identities=14% Similarity=0.468 Sum_probs=4.8
Q ss_pred HHHHhhc
Q 026329 101 TKGSLAF 107 (240)
Q Consensus 101 ~n~aL~y 107 (240)
+|.|++|
T Consensus 15 gnaalry 21 (26)
T 2ao6_B 15 GNAALRY 21 (26)
T ss_pred chHHHHH
Confidence 6677776
No 8
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=2.95 E-value=8.6e+02 Score=13.97 Aligned_cols=17 Identities=18% Similarity=-0.060 Sum_probs=12.6
Q ss_pred hhcccHHHHHHHHhhCC
Q 026329 221 LLTGELFKAWNSCSQVA 237 (240)
Q Consensus 221 ~~~gel~~~~~f~~~~p 237 (240)
-.+|++-.+++++-.||
T Consensus 31 ~~~~n~e~A~~~L~~h~ 47 (47)
T 2ekk_A 31 LNTSTMEQATEYLLTHP 47 (47)
T ss_dssp HHSCSHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHcCC
Confidence 34567778888888876
No 9
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=2.83 E-value=7.7e+02 Score=13.87 Aligned_cols=14 Identities=29% Similarity=0.406 Sum_probs=8.9
Q ss_pred HHHHHHHHHHheec
Q 026329 145 SALLLVVGLILFTL 158 (240)
Q Consensus 145 ~v~~it~Gv~lf~~ 158 (240)
.+..+.+|+++-..
T Consensus 8 IIaPivVGvvl~L~ 21 (33)
T 2kv5_A 8 VIAPIFVGLVLEMI 21 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45667778776544
No 10
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=2.75 E-value=6.2e+02 Score=17.56 Aligned_cols=12 Identities=25% Similarity=0.318 Sum_probs=9.7
Q ss_pred HHHhhHHHHhhh
Q 026329 34 FGYLVNGVCEEY 45 (240)
Q Consensus 34 ~~~l~~g~~qE~ 45 (240)
+-|++|-|+||-
T Consensus 8 vN~LI~RYLqEs 19 (90)
T 2xtc_A 8 VNFLVYRYLQES 19 (90)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 458899999985
Done!