Query 026329
Match_columns 240
No_of_seqs 140 out of 801
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 10:59:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026329.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026329hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nmla1 d.330.1.1 (A:2-101) En 18.8 52 0.0038 22.0 3.5 22 177-198 24-45 (100)
2 d2p7tc1 f.14.1.1 (C:86-119) Po 8.7 84 0.0061 16.2 1.6 15 142-156 4-18 (34)
3 d1r3jc_ f.14.1.1 (C:) Potassiu 5.9 2.7E+02 0.02 17.5 3.8 12 143-154 69-80 (103)
4 d1oyja2 c.47.1.5 (A:2-85) Clas 4.9 94 0.0069 19.3 0.6 28 4-31 1-28 (84)
5 d2gmha2 d.16.1.8 (A:237-335) E 3.0 2.3E+02 0.016 18.4 1.3 16 225-240 66-81 (99)
6 d1pvma3 g.41.13.1 (A:143-178) 3.0 2.6E+02 0.019 14.3 1.3 11 4-14 17-27 (36)
7 d1rkla_ f.23.30.1 (A:) Oligosa 3.0 1.9E+02 0.014 15.0 0.7 12 147-158 10-21 (36)
8 d2e74f1 f.23.25.1 (F:1-32) Pet 2.2 4E+02 0.029 13.2 1.3 16 142-157 4-19 (32)
9 d1wpga4 f.33.1.1 (A:1-124,A:24 2.1 1.1E+03 0.079 18.5 5.1 18 174-191 93-110 (472)
10 d1scjb_ d.58.3.2 (B:) Subtilis 2.1 3E+02 0.022 16.2 0.9 12 228-239 48-59 (71)
No 1
>d2nmla1 d.330.1.1 (A:2-101) Enhancer of rudimentary homolog, ERH {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.80 E-value=52 Score=22.03 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCC
Q 026329 177 GALIMDSFLGNLQEAIFTMNPE 198 (240)
Q Consensus 177 ~sl~~dg~~~~~qe~~~~~~~~ 198 (240)
+..++||+...++|++.+.++.
T Consensus 24 v~~cmegiC~iYEe~Lk~~~p~ 45 (100)
T d2nmla1 24 VNECMEGVCKMYEEHLKRMNPN 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCC
Confidence 5789999999999999887764
No 2
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=8.65 E-value=84 Score=16.16 Aligned_cols=15 Identities=27% Similarity=0.625 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHhe
Q 026329 142 EYVSALLLVVGLILF 156 (240)
Q Consensus 142 ~~~~v~~it~Gv~lf 156 (240)
+..++++|+.|+.-+
T Consensus 4 rcvavvvmvagits~ 18 (34)
T d2p7tc1 4 RCVAVVVMVAGITSF 18 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEeccchh
Confidence 456777788887653
No 3
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=5.94 E-value=2.7e+02 Score=17.45 Aligned_cols=12 Identities=25% Similarity=0.634 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 026329 143 YVSALLLVVGLI 154 (240)
Q Consensus 143 ~~~v~~it~Gv~ 154 (240)
.++++.+..|+.
T Consensus 69 ~~~~~~~~~Gi~ 80 (103)
T d1r3jc_ 69 CVAVVVMVAGIT 80 (103)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 4
>d1oyja2 c.47.1.5 (A:2-85) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}
Probab=4.95 E-value=94 Score=19.25 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=18.4
Q ss_pred ccccceeEEeeecCCCchhhHHHHHHHH
Q 026329 4 NEEQTRSLFGISLTDRPKWQQFLICSSG 31 (240)
Q Consensus 4 ~~~~~~~~~g~~~~~~~~~~~l~~~~~g 31 (240)
+|+++++++|...+-.....++++--.|
T Consensus 1 a~~~~l~Ly~~~~Sp~~~rvr~~L~~kg 28 (84)
T d1oyja2 1 AEEKELVLLDFWVSPFGQRCRIAMAEKG 28 (84)
T ss_dssp CCSCCEEEEECTTCHHHHHHHHHHHHHT
T ss_pred CCCCceEEEcCCCChHHHHHHHHHHHcC
Confidence 4788889998777655555555554444
No 5
>d2gmha2 d.16.1.8 (A:237-335) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}
Probab=3.03 E-value=2.3e+02 Score=18.38 Aligned_cols=16 Identities=13% Similarity=0.283 Sum_probs=11.2
Q ss_pred cHHHHHHHHhhCCCCC
Q 026329 225 ELFKAWNSCSQVAFLK 240 (240)
Q Consensus 225 el~~~~~f~~~~p~v~ 240 (240)
+-.+.++-+++||.++
T Consensus 66 ~p~~~lq~fK~HP~I~ 81 (99)
T d2gmha2 66 SPFREFQRWKHHPSIK 81 (99)
T ss_dssp CHHHHHHHHTTSTTTH
T ss_pred CHHHHHHHHhcCHHHH
Confidence 3456777788888764
No 6
>d1pvma3 g.41.13.1 (A:143-178) Hypothetical protein Ta0289 C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=2.99 E-value=2.6e+02 Score=14.27 Aligned_cols=11 Identities=27% Similarity=0.362 Sum_probs=7.4
Q ss_pred ccccceeEEee
Q 026329 4 NEEQTRSLFGI 14 (240)
Q Consensus 4 ~~~~~~~~~g~ 14 (240)
||++++++|--
T Consensus 17 ~~kgeikvfrc 27 (36)
T d1pvma3 17 NEKGEIKVFRC 27 (36)
T ss_dssp CTTSCEEEEEE
T ss_pred cCCCcEEEEEc
Confidence 56777777753
No 7
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.98 E-value=1.9e+02 Score=14.95 Aligned_cols=12 Identities=33% Similarity=0.808 Sum_probs=6.7
Q ss_pred HHHHHHHHheec
Q 026329 147 LLLVVGLILFTL 158 (240)
Q Consensus 147 ~~it~Gv~lf~~ 158 (240)
+.+++|+++.++
T Consensus 10 ~~i~fgi~mmtl 21 (36)
T d1rkla_ 10 LAITFGIVMMTL 21 (36)
T ss_dssp HHHHHHHHHHHH
T ss_pred EEeehhHHHHHH
Confidence 455666665443
No 8
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.17 E-value=4e+02 Score=13.24 Aligned_cols=16 Identities=44% Similarity=0.567 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHhee
Q 026329 142 EYVSALLLVVGLILFT 157 (240)
Q Consensus 142 ~~~~v~~it~Gv~lf~ 157 (240)
+.+.+.++++|++...
T Consensus 4 eil~aa~lsfglifvg 19 (32)
T d2e74f1 4 EMLYAALLSFGLIFVG 19 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHH
Confidence 4566677777776543
No 9
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=2.14 E-value=1.1e+03 Score=18.47 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026329 174 MISGALIMDSFLGNLQEA 191 (240)
Q Consensus 174 ll~~sl~~dg~~~~~qe~ 191 (240)
.+.+..+..+..+.+||.
T Consensus 93 ~I~~vv~~n~~i~~~qe~ 110 (472)
T d1wpga4 93 VILLILIANAIVGVWQER 110 (472)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhheeeeeeeEEeEEec
Confidence 344556778888999986
No 10
>d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]}
Probab=2.10 E-value=3e+02 Score=16.21 Aligned_cols=12 Identities=17% Similarity=0.016 Sum_probs=9.1
Q ss_pred HHHHHHhhCCCC
Q 026329 228 KAWNSCSQVAFL 239 (240)
Q Consensus 228 ~~~~f~~~~p~v 239 (240)
+.++.++++|+|
T Consensus 48 ~~~~~L~~~p~V 59 (71)
T d1scjb_ 48 KAVKELKKDPSV 59 (71)
T ss_dssp HHHHHHHTSTTE
T ss_pred HHHHHHHcCCCc
Confidence 467778888876
Done!