Query 026330
Match_columns 240
No_of_seqs 246 out of 1664
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 11:01:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026330.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026330hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2djb_A Polycomb group ring fin 99.5 9.9E-15 3.4E-19 104.0 6.4 61 20-89 8-69 (72)
2 1t1h_A Gspef-atpub14, armadill 99.5 7.8E-15 2.7E-19 105.7 5.4 63 22-92 3-65 (78)
3 3ng2_A RNF4, snurf, ring finge 99.5 1.2E-14 4.1E-19 102.6 3.8 58 23-89 6-70 (71)
4 2ecw_A Tripartite motif-contai 99.5 5.3E-14 1.8E-18 102.0 7.0 71 21-94 13-83 (85)
5 3ztg_A E3 ubiquitin-protein li 99.5 3.9E-14 1.3E-18 105.2 6.1 65 20-91 6-72 (92)
6 2yur_A Retinoblastoma-binding 99.5 4E-14 1.4E-18 101.5 5.7 55 20-81 8-63 (74)
7 2kr4_A Ubiquitin conjugation f 99.5 5.2E-14 1.8E-18 104.1 5.6 60 23-91 10-69 (85)
8 2ysl_A Tripartite motif-contai 99.5 4.7E-14 1.6E-18 100.1 4.8 58 22-85 15-72 (73)
9 2egp_A Tripartite motif-contai 99.5 1.4E-14 4.9E-19 104.2 2.1 72 21-94 6-77 (79)
10 2d8t_A Dactylidin, ring finger 99.5 1.7E-14 5.7E-19 102.5 2.2 56 22-86 10-65 (71)
11 2ecv_A Tripartite motif-contai 99.4 8.6E-14 3E-18 100.9 5.9 70 22-94 14-83 (85)
12 2ecy_A TNF receptor-associated 99.4 4.1E-14 1.4E-18 99.0 4.0 56 22-85 10-65 (66)
13 2csy_A Zinc finger protein 183 99.4 8.2E-14 2.8E-18 101.3 5.6 52 21-81 9-60 (81)
14 2kre_A Ubiquitin conjugation f 99.4 1.8E-14 6.3E-19 109.9 1.0 61 23-92 25-85 (100)
15 2xeu_A Ring finger protein 4; 99.4 6.2E-14 2.1E-18 96.6 3.6 55 26-89 2-63 (64)
16 3lrq_A E3 ubiquitin-protein li 99.4 8.5E-14 2.9E-18 105.5 4.4 61 23-91 18-79 (100)
17 2ct2_A Tripartite motif protei 99.4 2.8E-13 9.4E-18 99.2 7.0 60 20-85 8-71 (88)
18 1wgm_A Ubiquitin conjugation f 99.4 1E-13 3.5E-18 105.3 4.7 61 23-92 18-79 (98)
19 1jm7_A BRCA1, breast cancer ty 99.4 7.4E-14 2.5E-18 106.8 2.9 60 25-90 19-78 (112)
20 3fl2_A E3 ubiquitin-protein li 99.4 1.4E-13 4.9E-18 107.8 4.1 56 25-88 50-106 (124)
21 2ect_A Ring finger protein 126 99.4 2.7E-13 9.3E-18 97.6 5.0 60 20-88 8-70 (78)
22 2ysj_A Tripartite motif-contai 99.4 4.1E-13 1.4E-17 92.9 5.4 49 22-76 15-63 (63)
23 1g25_A CDK-activating kinase a 99.4 3E-13 1E-17 94.3 4.7 56 26-89 2-62 (65)
24 2y43_A E3 ubiquitin-protein li 99.4 9E-14 3.1E-18 104.7 1.8 60 23-91 18-78 (99)
25 2ea6_A Ring finger protein 4; 99.4 2.1E-13 7.3E-18 95.3 3.6 53 21-82 9-68 (69)
26 1z6u_A NP95-like ring finger p 99.4 1.5E-13 5.2E-18 111.8 2.5 58 24-89 75-133 (150)
27 3hct_A TNF receptor-associated 99.3 9E-13 3.1E-17 102.5 5.7 59 22-88 13-71 (118)
28 2c2l_A CHIP, carboxy terminus 99.3 1.4E-12 4.7E-17 113.7 6.4 62 23-92 204-265 (281)
29 2ecn_A Ring finger protein 141 99.3 2.4E-13 8.2E-18 95.9 1.1 54 22-85 10-63 (70)
30 2yu4_A E3 SUMO-protein ligase 99.3 1.6E-12 5.6E-17 97.6 5.7 66 24-92 4-73 (94)
31 4ayc_A E3 ubiquitin-protein li 99.3 4.8E-13 1.7E-17 106.9 2.8 49 25-82 51-99 (138)
32 2kiz_A E3 ubiquitin-protein li 99.3 1.6E-12 5.3E-17 91.4 4.8 52 22-82 9-63 (69)
33 2ckl_A Polycomb group ring fin 99.3 1.2E-12 4E-17 100.2 4.1 51 24-83 12-63 (108)
34 2ecj_A Tripartite motif-contai 99.3 1.4E-12 4.7E-17 88.3 3.5 50 21-76 9-58 (58)
35 2f42_A STIP1 homology and U-bo 99.3 4.3E-12 1.5E-16 106.4 6.9 63 21-91 100-162 (179)
36 4ap4_A E3 ubiquitin ligase RNF 99.3 1.5E-12 5.2E-17 101.5 3.8 58 25-91 5-69 (133)
37 1rmd_A RAG1; V(D)J recombinati 99.3 8.5E-13 2.9E-17 102.1 2.3 56 24-87 20-75 (116)
38 2ep4_A Ring finger protein 24; 99.3 3.3E-12 1.1E-16 90.9 4.8 52 22-82 10-64 (74)
39 2ecm_A Ring finger and CHY zin 99.3 3.7E-12 1.3E-16 85.4 4.6 47 26-81 4-54 (55)
40 1jm7_B BARD1, BRCA1-associated 99.3 2.9E-13 9.9E-18 105.2 -1.2 57 24-91 19-76 (117)
41 1x4j_A Ring finger protein 38; 99.3 2.8E-12 9.7E-17 91.7 4.1 51 23-82 19-72 (75)
42 2ckl_B Ubiquitin ligase protei 99.3 2.1E-12 7.1E-17 105.9 3.3 57 24-88 51-109 (165)
43 3l11_A E3 ubiquitin-protein li 99.2 5.4E-13 1.8E-17 103.1 -0.2 53 22-82 10-62 (115)
44 2l0b_A E3 ubiquitin-protein li 99.2 4.2E-12 1.4E-16 94.6 4.0 50 24-82 37-89 (91)
45 1iym_A EL5; ring-H2 finger, ub 99.2 4.6E-12 1.6E-16 85.0 3.6 48 25-81 3-54 (55)
46 1chc_A Equine herpes virus-1 r 99.2 6.4E-12 2.2E-16 87.9 4.4 48 25-81 3-51 (68)
47 3hcs_A TNF receptor-associated 99.2 1.4E-11 4.8E-16 101.2 5.6 59 22-88 13-71 (170)
48 1v87_A Deltex protein 2; ring- 99.2 2E-11 6.9E-16 93.8 6.0 53 26-82 24-94 (114)
49 3knv_A TNF receptor-associated 99.2 3.4E-12 1.2E-16 102.8 1.2 51 23-81 27-77 (141)
50 4ap4_A E3 ubiquitin ligase RNF 99.2 7.6E-12 2.6E-16 97.5 3.2 57 24-89 69-132 (133)
51 1e4u_A Transcriptional repress 99.2 1.9E-11 6.7E-16 89.0 4.0 56 22-85 6-65 (78)
52 1bor_A Transcription factor PM 99.1 8.2E-12 2.8E-16 85.0 0.8 47 24-82 3-49 (56)
53 2bay_A PRE-mRNA splicing facto 99.1 6.2E-11 2.1E-15 82.5 4.4 55 27-90 3-58 (61)
54 2ecl_A Ring-box protein 2; RNF 99.1 5.1E-11 1.7E-15 86.9 3.5 50 26-84 14-78 (81)
55 2y1n_A E3 ubiquitin-protein li 99.0 1.1E-10 3.8E-15 108.2 4.7 54 25-86 330-383 (389)
56 2vje_A E3 ubiquitin-protein li 99.0 1.4E-10 4.9E-15 81.0 3.5 48 25-81 6-56 (64)
57 3htk_C E3 SUMO-protein ligase 99.0 9.9E-11 3.4E-15 103.2 2.8 61 24-91 178-241 (267)
58 2vje_B MDM4 protein; proto-onc 99.0 2.7E-10 9.2E-15 79.4 3.2 48 25-81 5-55 (63)
59 4ic3_A E3 ubiquitin-protein li 98.9 2.2E-10 7.6E-15 82.1 1.8 45 25-82 22-67 (74)
60 3dpl_R Ring-box protein 1; ubi 98.9 5.9E-10 2E-14 85.7 4.1 48 26-82 36-101 (106)
61 2ecg_A Baculoviral IAP repeat- 98.8 7.3E-10 2.5E-14 79.4 2.1 45 25-82 23-68 (75)
62 2ea5_A Cell growth regulator w 98.8 3.2E-09 1.1E-13 75.1 4.4 47 23-82 11-58 (68)
63 2d8s_A Cellular modulator of i 98.8 8.2E-09 2.8E-13 75.4 6.2 53 23-82 11-70 (80)
64 2yho_A E3 ubiquitin-protein li 98.7 5.4E-10 1.9E-14 81.3 -1.7 44 26-82 17-61 (79)
65 4a0k_B E3 ubiquitin-protein li 98.7 2.4E-09 8.3E-14 83.8 0.5 48 26-82 47-112 (117)
66 1wim_A KIAA0161 protein; ring 98.7 4.1E-09 1.4E-13 78.5 1.0 61 25-86 3-70 (94)
67 3t6p_A Baculoviral IAP repeat- 98.5 2.1E-08 7.3E-13 91.7 1.3 45 25-82 293-338 (345)
68 2ct0_A Non-SMC element 1 homol 98.4 5.5E-07 1.9E-11 64.9 5.5 50 25-81 13-63 (74)
69 1vyx_A ORF K3, K3RING; zinc-bi 98.2 2.1E-06 7.1E-11 59.2 4.6 50 25-81 4-58 (60)
70 3k1l_B Fancl; UBC, ring, RWD, 98.0 2.9E-06 9.8E-11 77.5 3.2 59 24-82 305-373 (381)
71 3vk6_A E3 ubiquitin-protein li 97.7 3.1E-05 1.1E-09 58.6 3.9 51 29-87 3-54 (101)
72 3m62_A Ubiquitin conjugation f 97.2 0.00036 1.2E-08 71.0 5.5 62 22-92 886-948 (968)
73 3nw0_A Non-structural maintena 96.8 0.00077 2.6E-08 58.4 4.0 48 27-81 180-228 (238)
74 2jun_A Midline-1; B-BOX, TRIM, 96.3 0.0019 6.4E-08 47.9 2.4 32 26-57 2-36 (101)
75 2ko5_A Ring finger protein Z; 93.0 0.11 3.9E-06 38.6 4.3 48 24-81 25-72 (99)
76 2cs3_A Protein C14ORF4, MY039 92.7 0.12 4.1E-06 37.5 4.0 39 24-62 12-54 (93)
77 4fo9_A E3 SUMO-protein ligase 91.4 0.2 6.9E-06 45.8 4.9 57 26-87 214-271 (360)
78 3i2d_A E3 SUMO-protein ligase 91.2 0.14 4.8E-06 46.9 3.7 56 26-86 248-304 (371)
79 2lri_C Autoimmune regulator; Z 85.3 0.73 2.5E-05 31.7 3.4 49 24-79 9-59 (66)
80 2rgt_A Fusion of LIM/homeobox 76.5 2.9 9.8E-05 33.2 4.5 48 26-84 32-79 (169)
81 2l5u_A Chromodomain-helicase-D 73.9 2.1 7E-05 28.7 2.5 49 23-78 7-57 (61)
82 1weo_A Cellulose synthase, cat 72.9 12 0.00042 27.3 6.6 49 26-82 15-70 (93)
83 2k16_A Transcription initiatio 71.3 0.96 3.3E-05 31.4 0.3 53 23-80 14-69 (75)
84 2xqn_T Testin, TESS; metal-bin 70.5 2.8 9.6E-05 31.4 2.9 46 26-82 29-75 (126)
85 1m3v_A FLIN4, fusion of the LI 70.1 2.3 7.9E-05 32.0 2.3 51 26-85 31-84 (122)
86 2d8v_A Zinc finger FYVE domain 68.7 3 0.0001 28.9 2.4 34 23-57 4-38 (67)
87 1fjk_A Cardiac phospholamban; 67.8 5.2 0.00018 25.6 3.2 10 229-238 34-43 (52)
88 2jtn_A LIM domain-binding prot 67.5 3.3 0.00011 33.3 2.9 46 26-82 86-131 (182)
89 2l3k_A Rhombotin-2, linker, LI 62.6 27 0.00091 26.0 7.1 34 26-59 35-70 (123)
90 2lbm_A Transcriptional regulat 61.4 8.9 0.0003 30.3 4.2 56 23-78 59-116 (142)
91 1mm2_A MI2-beta; PHD, zinc fin 61.1 2.3 8E-05 28.5 0.7 50 23-79 5-56 (61)
92 2xjy_A Rhombotin-2; oncoprotei 60.6 6.5 0.00022 29.5 3.2 48 26-82 28-78 (131)
93 3u5n_A E3 ubiquitin-protein li 59.8 1.8 6.3E-05 35.9 -0.1 50 24-80 4-55 (207)
94 3ql9_A Transcriptional regulat 59.0 7.5 0.00026 30.2 3.3 56 23-78 53-110 (129)
95 2cup_A Skeletal muscle LIM-pro 58.4 4.2 0.00014 29.1 1.7 47 26-83 32-79 (101)
96 1wen_A Inhibitor of growth fam 58.3 7.8 0.00027 26.8 3.0 49 24-80 13-66 (71)
97 1vfy_A Phosphatidylinositol-3- 57.5 5.3 0.00018 27.6 2.1 29 27-55 11-43 (73)
98 2yw8_A RUN and FYVE domain-con 56.5 4.9 0.00017 28.4 1.7 32 25-56 17-52 (82)
99 1z2q_A LM5-1; membrane protein 56.4 4.7 0.00016 28.6 1.7 32 25-56 19-54 (84)
100 1wil_A KIAA1045 protein; ring 54.9 10 0.00035 27.5 3.2 56 22-77 10-74 (89)
101 1weu_A Inhibitor of growth fam 54.2 6 0.00021 28.9 1.9 46 25-79 34-85 (91)
102 1rut_X Flinc4, fusion protein 54.2 4 0.00014 33.0 1.1 49 26-83 31-82 (188)
103 1x4u_A Zinc finger, FYVE domai 53.3 4.8 0.00016 28.6 1.3 31 25-55 12-46 (84)
104 1f62_A Transcription factor WS 53.0 5.4 0.00019 25.3 1.4 45 29-78 2-49 (51)
105 3arc_L Photosystem II reaction 52.8 6.2 0.00021 23.9 1.5 17 221-237 11-27 (37)
106 1joc_A EEA1, early endosomal a 52.5 4.6 0.00016 31.0 1.1 30 26-55 68-101 (125)
107 1wd2_A Ariadne-1 protein homol 52.1 0.88 3E-05 30.7 -2.7 33 27-59 6-46 (60)
108 3mjh_B Early endosome antigen 51.7 2.8 9.7E-05 25.2 -0.2 15 26-40 4-18 (34)
109 2o35_A Hypothetical protein DU 51.7 6.1 0.00021 29.5 1.6 14 48-61 42-55 (105)
110 3fyb_A Protein of unknown func 51.6 6.1 0.00021 29.5 1.6 14 48-61 41-54 (104)
111 1fp0_A KAP-1 corepressor; PHD 51.5 5.9 0.0002 28.8 1.5 50 23-79 21-72 (88)
112 1iml_A CRIP, cysteine rich int 50.6 12 0.00041 25.2 3.0 45 25-80 25-71 (76)
113 1x64_A Alpha-actinin-2 associa 50.5 17 0.00059 25.3 3.9 42 25-83 23-64 (89)
114 2lv9_A Histone-lysine N-methyl 50.3 3.7 0.00013 30.1 0.3 47 25-78 26-75 (98)
115 3mpx_A FYVE, rhogef and PH dom 50.2 3.4 0.00011 37.5 0.0 53 26-80 374-430 (434)
116 1yod_A Water-solublized phosph 49.8 20 0.00068 20.5 3.2 12 228-239 12-23 (30)
117 1wfk_A Zinc finger, FYVE domai 49.2 6.8 0.00023 28.2 1.5 32 25-56 7-42 (88)
118 1x62_A C-terminal LIM domain p 48.9 8.8 0.0003 26.2 2.0 41 25-82 13-53 (79)
119 3t7l_A Zinc finger FYVE domain 48.5 6 0.0002 28.5 1.1 32 26-57 19-54 (90)
120 3o36_A Transcription intermedi 47.6 5.6 0.00019 32.1 1.0 48 26-80 3-52 (184)
121 2dar_A PDZ and LIM domain prot 44.7 16 0.00053 25.6 2.9 42 26-84 24-65 (90)
122 2yql_A PHD finger protein 21A; 44.6 2.3 8E-05 27.8 -1.5 48 24-78 6-55 (56)
123 1wep_A PHF8; structural genomi 43.1 43 0.0015 23.1 5.0 53 23-80 8-64 (79)
124 1dvp_A HRS, hepatocyte growth 42.1 9.4 0.00032 31.7 1.5 33 24-56 158-194 (220)
125 1y02_A CARP2, FYVE-ring finger 41.9 7.5 0.00026 29.8 0.8 35 24-58 16-54 (120)
126 2pv0_B DNA (cytosine-5)-methyl 41.4 39 0.0013 30.9 5.6 56 24-79 90-148 (386)
127 1wyh_A SLIM 2, skeletal muscle 40.1 26 0.00088 23.0 3.3 40 27-83 5-46 (72)
128 1z60_A TFIIH basal transcripti 39.5 15 0.00052 24.6 1.9 40 28-76 16-58 (59)
129 3zyq_A Hepatocyte growth facto 38.6 13 0.00043 31.2 1.8 32 25-56 162-197 (226)
130 1nyp_A Pinch protein; LIM doma 38.4 22 0.00076 23.0 2.7 40 27-83 5-44 (66)
131 2d8z_A Four and A half LIM dom 38.0 29 0.001 22.6 3.3 38 28-82 6-43 (70)
132 2l43_A N-teminal domain from h 37.7 5.5 0.00019 28.7 -0.5 52 23-81 21-77 (88)
133 3hd7_B Syntaxin-1A; membrane p 37.0 40 0.0014 24.9 4.3 20 219-238 80-99 (109)
134 2d8x_A Protein pinch; LIM doma 36.8 21 0.00072 23.4 2.4 25 29-53 7-31 (70)
135 1x63_A Skeletal muscle LIM-pro 36.7 34 0.0012 23.1 3.6 40 28-84 16-57 (82)
136 3a1b_A DNA (cytosine-5)-methyl 36.3 28 0.00096 28.0 3.4 53 23-78 75-133 (159)
137 1x4l_A Skeletal muscle LIM-pro 34.8 31 0.0011 22.7 3.0 40 27-83 5-48 (72)
138 2cur_A Skeletal muscle LIM-pro 34.3 48 0.0017 21.5 3.9 34 26-59 30-64 (69)
139 2jmo_A Parkin; IBR, E3 ligase, 33.8 3 0.0001 29.5 -2.5 16 44-59 55-70 (80)
140 1v6g_A Actin binding LIM prote 33.8 24 0.00082 23.9 2.4 40 28-84 16-55 (81)
141 2lat_A Dolichyl-diphosphooligo 33.7 22 0.00076 21.7 1.8 21 219-239 4-24 (37)
142 2ro1_A Transcription intermedi 33.3 10 0.00034 31.0 0.3 48 27-79 2-49 (189)
143 1x68_A FHL5 protein; four-and- 32.4 33 0.0011 22.9 2.9 39 28-83 6-48 (76)
144 2cuq_A Four and A half LIM dom 32.3 33 0.0011 23.0 2.9 39 28-83 16-54 (80)
145 2cor_A Pinch protein; LIM doma 32.3 36 0.0012 23.1 3.1 41 26-83 14-54 (79)
146 1b8t_A Protein (CRP1); LIM dom 32.0 38 0.0013 27.1 3.6 34 26-59 33-67 (192)
147 2e6r_A Jumonji/ARID domain-con 31.8 2.9 0.0001 30.4 -2.9 51 23-78 12-65 (92)
148 2ysm_A Myeloid/lymphoid or mix 31.2 14 0.00046 27.3 0.7 48 25-77 5-55 (111)
149 1xwh_A Autoimmune regulator; P 31.0 5.9 0.0002 26.8 -1.3 47 25-78 6-54 (66)
150 2jmi_A Protein YNG1, ING1 homo 30.9 11 0.00038 27.4 0.1 48 23-78 22-75 (90)
151 2cu8_A Cysteine-rich protein 2 30.8 30 0.001 23.1 2.4 40 27-83 9-49 (76)
152 1x4k_A Skeletal muscle LIM-pro 30.8 35 0.0012 22.4 2.7 39 28-83 6-46 (72)
153 2fiy_A Protein FDHE homolog; F 29.8 4.6 0.00016 35.9 -2.5 46 25-79 180-231 (309)
154 1x61_A Thyroid receptor intera 29.7 60 0.0021 21.1 3.8 34 26-59 32-66 (72)
155 1tac_A TAT protein; transcript 29.6 81 0.0028 22.6 4.5 32 42-92 19-50 (86)
156 1x3h_A Leupaxin; paxillin fami 28.7 33 0.0011 23.0 2.4 39 28-83 16-54 (80)
157 2vnf_A ING 4, P29ING4, inhibit 27.5 10 0.00035 25.2 -0.5 45 25-78 8-58 (60)
158 2yt5_A Metal-response element- 27.1 7 0.00024 26.1 -1.4 54 25-80 4-62 (66)
159 2d8y_A Eplin protein; LIM doma 27.0 45 0.0015 23.1 2.9 34 26-59 41-75 (91)
160 1wig_A KIAA1808 protein; LIM d 26.9 51 0.0017 21.9 3.1 37 28-81 6-42 (73)
161 1j2o_A FLIN2, fusion of rhombo 26.9 57 0.002 23.7 3.6 34 26-59 29-65 (114)
162 1rkl_A Dolichyl-diphosphooligo 26.7 27 0.00092 21.2 1.3 21 219-239 4-24 (36)
163 1x6a_A LIMK-2, LIM domain kina 26.6 34 0.0012 23.1 2.1 37 28-81 16-52 (81)
164 1b8t_A Protein (CRP1); LIM dom 25.4 52 0.0018 26.2 3.3 43 26-79 141-184 (192)
165 2puy_A PHD finger protein 21A; 25.1 10 0.00034 25.0 -0.9 47 26-79 4-52 (60)
166 2gmg_A Hypothetical protein PF 24.3 39 0.0013 25.3 2.1 28 38-79 66-93 (105)
167 2dlo_A Thyroid receptor-intera 24.3 34 0.0012 23.1 1.8 39 27-82 15-53 (81)
168 2dj7_A Actin-binding LIM prote 23.5 35 0.0012 23.3 1.7 32 26-57 41-72 (80)
169 3c6w_A P28ING5, inhibitor of g 22.4 15 0.00053 24.2 -0.4 45 25-78 7-57 (59)
170 1zbd_B Rabphilin-3A; G protein 22.3 49 0.0017 25.6 2.4 49 25-78 53-106 (134)
171 3shb_A E3 ubiquitin-protein li 22.2 12 0.0004 26.4 -1.1 46 29-78 28-76 (77)
172 2l4z_A DNA endonuclease RBBP8, 22.1 55 0.0019 24.4 2.7 14 27-40 61-74 (123)
173 2g6q_A Inhibitor of growth pro 21.8 16 0.00056 24.4 -0.4 45 25-78 9-59 (62)
174 1g47_A Pinch protein; LIM doma 21.7 72 0.0024 21.0 3.0 41 26-83 10-52 (77)
175 2ehe_A Four and A half LIM dom 21.7 63 0.0022 21.7 2.8 39 28-83 16-56 (82)
176 3v43_A Histone acetyltransfera 21.6 19 0.00065 26.7 -0.1 48 26-78 60-111 (112)
177 2vpb_A Hpygo1, pygopus homolog 20.7 44 0.0015 22.4 1.7 30 25-54 6-40 (65)
178 3asl_A E3 ubiquitin-protein li 20.5 19 0.00064 24.6 -0.3 45 29-78 20-68 (70)
179 1wem_A Death associated transc 20.5 72 0.0025 21.6 2.8 53 26-79 15-70 (76)
180 2egq_A FHL1 protein; LIM domai 20.1 61 0.0021 21.4 2.3 38 28-82 16-58 (77)
181 2e6s_A E3 ubiquitin-protein li 20.0 17 0.00057 25.5 -0.6 45 29-78 28-76 (77)
No 1
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=9.9e-15 Score=103.99 Aligned_cols=61 Identities=21% Similarity=0.501 Sum_probs=52.5
Q ss_pred CCCCCCCccccccccccCCCcEEc-CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceecc
Q 026330 20 GSENYNGCFDCNICLDFAYDPVVT-LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLY 89 (240)
Q Consensus 20 ~~~~~~~~~~C~ICle~~~~pv~t-~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~ 89 (240)
+.+..++.+.|+||++.+.+|+++ +|||.||..||.+|++.+ ..||+||..+..+++..+.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---------~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS---------NRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC---------SSCTTTCCCCCSSCSCCCC
T ss_pred hHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC---------CcCCCcCcccCcccccccC
Confidence 345667889999999999999997 999999999999999853 8999999999887766553
No 2
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.53 E-value=7.8e-15 Score=105.74 Aligned_cols=63 Identities=30% Similarity=0.632 Sum_probs=54.6
Q ss_pred CCCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceeccCCC
Q 026330 22 ENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGRG 92 (240)
Q Consensus 22 ~~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~~~g 92 (240)
+...+++.|+||++.+.+|++++|||+||..||.+|++.. ...||+|+..+...++.++....
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~--------~~~CP~C~~~~~~~~l~~n~~l~ 65 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAG--------HKTCPKSQETLLHAGLTPNYVLK 65 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTT--------CCBCTTTCCBCSSCCCEECTTTH
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHC--------cCCCCCCcCCCChhhCccCHHHH
Confidence 4556789999999999999999999999999999999842 38899999999888888776543
No 3
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.49 E-value=1.2e-14 Score=102.58 Aligned_cols=58 Identities=34% Similarity=0.813 Sum_probs=51.4
Q ss_pred CCCCccccccccccCCCc-------EEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceecc
Q 026330 23 NYNGCFDCNICLDFAYDP-------VVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLY 89 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~p-------v~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~ 89 (240)
..+++..|+||++.+.++ +.++|||.||..||.+|++.+ ..||+||..+..+++.++|
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---------NTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC---------SBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC---------CCCCCCCCccChhheeecc
Confidence 445678999999999887 889999999999999999854 7999999999988888776
No 4
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.48 E-value=5.3e-14 Score=102.02 Aligned_cols=71 Identities=25% Similarity=0.556 Sum_probs=58.1
Q ss_pred CCCCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceeccCCCCC
Q 026330 21 SENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGRGQT 94 (240)
Q Consensus 21 ~~~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~~~g~~ 94 (240)
.+..++.+.|+||++.+.+|++++|||.||..||..|+.... .......||+||..+..+++.+++.....
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~---~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNR---NTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSB---CTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred HHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhcc---CCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 345677899999999999999999999999999999998631 11235899999999998888887665543
No 5
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.48 E-value=3.9e-14 Score=105.16 Aligned_cols=65 Identities=28% Similarity=0.499 Sum_probs=53.2
Q ss_pred CCCCCCCccccccccccCCCcEEcC-CCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCC-CcCcceeccCC
Q 026330 20 GSENYNGCFDCNICLDFAYDPVVTL-CGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADI-SHTTMVPLYGR 91 (240)
Q Consensus 20 ~~~~~~~~~~C~ICle~~~~pv~t~-CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v-~~~~l~p~~~~ 91 (240)
+.+...+++.|+||++.+.+|++++ |||+||..||..|+... +...||+||..+ ..+++.+++..
T Consensus 6 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-------~~~~CP~Cr~~~~~~~~~~~n~~l 72 (92)
T 3ztg_A 6 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES-------DEHTCPTCHQNDVSPDALIANKFL 72 (92)
T ss_dssp SCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHC-------TTCCCTTTCCSSCCTTSCEECHHH
T ss_pred ccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhc-------CCCcCcCCCCcCCCccccCcCHHH
Confidence 3456678899999999999999999 99999999999999743 237999999997 45566665443
No 6
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.47 E-value=4e-14 Score=101.54 Aligned_cols=55 Identities=31% Similarity=0.611 Sum_probs=47.2
Q ss_pred CCCCCCCccccccccccCCCcEEcC-CCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026330 20 GSENYNGCFDCNICLDFAYDPVVTL-CGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 20 ~~~~~~~~~~C~ICle~~~~pv~t~-CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
+.+...+++.|+||++.+.+|++++ |||.||..||.+|++.. +...||+||+.+.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-------~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES-------DEHTCPTCHQNDV 63 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHS-------SSSCCSSSCCSSC
T ss_pred ccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhc-------CCCcCCCCCCcCC
Confidence 3456678899999999999999999 99999999999999843 2368999999754
No 7
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.46 E-value=5.2e-14 Score=104.09 Aligned_cols=60 Identities=17% Similarity=0.192 Sum_probs=53.8
Q ss_pred CCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceeccCC
Q 026330 23 NYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGR 91 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~~~ 91 (240)
...+++.|+||++.+++||+++|||+||..||.+|+... ..||+|+..+...+++++...
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~---------~~cP~~~~~l~~~~l~pn~~L 69 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNS---------PTDPFNRQMLTESMLEPVPEL 69 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHC---------SBCTTTCCBCCGGGCEECHHH
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcC---------CCCCCCcCCCChHhcchHHHH
Confidence 456789999999999999999999999999999999842 789999999998888888654
No 8
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=4.7e-14 Score=100.10 Aligned_cols=58 Identities=29% Similarity=0.678 Sum_probs=49.2
Q ss_pred CCCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcc
Q 026330 22 ENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTM 85 (240)
Q Consensus 22 ~~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l 85 (240)
+..++.+.|+||++.+.+|++++|||.||..||.+|++.. .....||+||..+..+++
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~------~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETS------CGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSS------CSCCCCSSSCCCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcC------CCCCCCCCCCCcCCcccC
Confidence 4566789999999999999999999999999999999731 234799999999876654
No 9
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.45 E-value=1.4e-14 Score=104.20 Aligned_cols=72 Identities=25% Similarity=0.465 Sum_probs=57.7
Q ss_pred CCCCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceeccCCCCC
Q 026330 21 SENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGRGQT 94 (240)
Q Consensus 21 ~~~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~~~g~~ 94 (240)
.+..++++.|+||++.+.+|++++|||.||..||.+|++... ........||+||..+...++.+++.....
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~--~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAV--TSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCS--SSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcc--cCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 346678899999999999999999999999999999998421 011235899999999988888877665543
No 10
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.7e-14 Score=102.52 Aligned_cols=56 Identities=23% Similarity=0.617 Sum_probs=48.5
Q ss_pred CCCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcce
Q 026330 22 ENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMV 86 (240)
Q Consensus 22 ~~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~ 86 (240)
+...+.+.|+||++.+.+|+.++|||.||..||.+|+... ..||+||..+..++++
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---------~~CP~Cr~~~~~~~~~ 65 (71)
T 2d8t_A 10 APSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG---------KRCALCRQEIPEDFLD 65 (71)
T ss_dssp CSSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS---------SBCSSSCCBCCHHHHS
T ss_pred ccCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC---------CcCcCcCchhCHhhcc
Confidence 3455678999999999999999999999999999999833 7999999998766554
No 11
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=8.6e-14 Score=100.87 Aligned_cols=70 Identities=23% Similarity=0.523 Sum_probs=57.1
Q ss_pred CCCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceeccCCCCC
Q 026330 22 ENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGRGQT 94 (240)
Q Consensus 22 ~~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~~~g~~ 94 (240)
+..++.+.|+||++.+.+|+.++|||.||..||..|+.... .......||+||..+...++.+++.....
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~---~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSM---LDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHH---HTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhh---cCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 45667899999999999999999999999999999998631 11235899999999988888777665543
No 12
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=4.1e-14 Score=98.97 Aligned_cols=56 Identities=25% Similarity=0.661 Sum_probs=48.3
Q ss_pred CCCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcc
Q 026330 22 ENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTM 85 (240)
Q Consensus 22 ~~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l 85 (240)
+..++.+.|+||++.+.+|+.++|||.||..||.+|++. ....||+||+.+..+++
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--------~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSS--------SSPKCTACQESIVKDKV 65 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTT--------SSCCCTTTCCCCCTTTC
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHh--------CcCCCCCCCcCCChhhc
Confidence 355678999999999999999999999999999999962 23789999999876654
No 13
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=8.2e-14 Score=101.25 Aligned_cols=52 Identities=33% Similarity=0.717 Sum_probs=46.3
Q ss_pred CCCCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026330 21 SENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 21 ~~~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
.+..++.+.|+||++.+.+|++++|||.||..||.+|++.. ..||+||..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---------~~CP~Cr~~~~ 60 (81)
T 2csy_A 9 SEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRAT---------PRCYICDQPTG 60 (81)
T ss_dssp SSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHC---------SBCSSSCCBCC
T ss_pred cccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCC---------CcCCCcCcccc
Confidence 34556789999999999999999999999999999999843 79999999885
No 14
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.42 E-value=1.8e-14 Score=109.86 Aligned_cols=61 Identities=16% Similarity=0.203 Sum_probs=54.2
Q ss_pred CCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceeccCCC
Q 026330 23 NYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGRG 92 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~~~g 92 (240)
...+.+.|+||++.+.+||+++|||+||..||.+|+.. ...||+|+..+...+++++....
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~---------~~~cP~~~~~l~~~~L~pn~~Lk 85 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN---------SPTDPFNRQTLTESMLEPVPELK 85 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS---------CSBCSSSCCBCCTTSSEECHHHH
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc---------CCCCCCCCCCCChhhceECHHHH
Confidence 45678999999999999999999999999999999983 37999999999998999886543
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.42 E-value=6.2e-14 Score=96.63 Aligned_cols=55 Identities=35% Similarity=0.829 Sum_probs=49.4
Q ss_pred CccccccccccCCCc-------EEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceecc
Q 026330 26 GCFDCNICLDFAYDP-------VVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLY 89 (240)
Q Consensus 26 ~~~~C~ICle~~~~p-------v~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~ 89 (240)
+++.|+||++.+.++ +.++|||.||..||.+|++.. ..||+||..+..+++.++|
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---------NTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC---------SBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC---------CCCCCCCccCCccceeeee
Confidence 467899999999887 789999999999999999853 7999999999998888876
No 16
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.42 E-value=8.5e-14 Score=105.54 Aligned_cols=61 Identities=31% Similarity=0.724 Sum_probs=52.8
Q ss_pred CCCCccccccccccCCCcEE-cCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceeccCC
Q 026330 23 NYNGCFDCNICLDFAYDPVV-TLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGR 91 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~pv~-t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~~~ 91 (240)
.+++++.|+||++.+.+|+. ++|||.||..||.+|+.... ..||+||..+..+++++++..
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~--------~~CP~Cr~~~~~~~l~~~~~~ 79 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR--------AQCPHCRAPLQLRELVNCRWA 79 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTC--------SBCTTTCCBCCGGGCEECTTH
T ss_pred cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCc--------CCCCCCCCcCCHHHhHhhHHH
Confidence 44567899999999999999 99999999999999999542 689999999988888776543
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2.8e-13 Score=99.20 Aligned_cols=60 Identities=25% Similarity=0.627 Sum_probs=50.2
Q ss_pred CCCCCCCccccccccccCCC----cEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcc
Q 026330 20 GSENYNGCFDCNICLDFAYD----PVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTM 85 (240)
Q Consensus 20 ~~~~~~~~~~C~ICle~~~~----pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l 85 (240)
+.+..++.+.|+||++.+.+ |++++|||.||..||.+|++... ....||+||..+...++
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~------~~~~CP~Cr~~~~~~~i 71 (88)
T 2ct2_A 8 NLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI------NGVRCPFCSKITRITSL 71 (88)
T ss_dssp SCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS------SCBCCTTTCCCBCCSST
T ss_pred ChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC------CCcCCCCCCCcccchhH
Confidence 34566788999999999998 99999999999999999998541 34799999998876543
No 18
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.42 E-value=1e-13 Score=105.33 Aligned_cols=61 Identities=16% Similarity=0.087 Sum_probs=54.2
Q ss_pred CCCCccccccccccCCCcEEcCCC-CcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceeccCCC
Q 026330 23 NYNGCFDCNICLDFAYDPVVTLCG-HLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGRG 92 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~pv~t~CG-H~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~~~g 92 (240)
...+++.|+||++++++||+++|| |+||..||.+|+.. ...||+|+..+...+++++....
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~---------~~~cP~~~~~l~~~~L~pn~~Lk 79 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS---------DQTDPFNRSPLTMDQIRPNTELK 79 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT---------SCBCTTTCSBCCTTTSEECHHHH
T ss_pred cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh---------CCCCCCCCCCCChhhceEcHHHH
Confidence 445789999999999999999999 99999999999983 27899999999998999886544
No 19
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.40 E-value=7.4e-14 Score=106.83 Aligned_cols=60 Identities=33% Similarity=0.800 Sum_probs=50.5
Q ss_pred CCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceeccC
Q 026330 25 NGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYG 90 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~~ 90 (240)
.+.+.|+||++.+.+|+.++|||.||..||.+|+.... ....||+||..+...++.++..
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~------~~~~CP~Cr~~~~~~~~~~~~~ 78 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKK------GPSQCPLCKNDITKRSLQESTR 78 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSS------SSCCCTTTSCCCCTTTCBCCCS
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCC------CCCCCcCCCCcCCHhhcCccHH
Confidence 45688999999999999999999999999999998431 3368999999998777666544
No 20
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.39 E-value=1.4e-13 Score=107.77 Aligned_cols=56 Identities=27% Similarity=0.693 Sum_probs=47.6
Q ss_pred CCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc-Ccceec
Q 026330 25 NGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH-TTMVPL 88 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~-~~l~p~ 88 (240)
++++.|+||++.+.+|+.++|||+||..||..|+... ...||+||..+.. .++.++
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--------~~~CP~Cr~~~~~~~~~~~n 106 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQ--------VFSCPACRYDLGRSYAMQVN 106 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT--------CCBCTTTCCBCCTTCCCCCC
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHC--------cCCCCCCCccCCCCCCCCCC
Confidence 4568999999999999999999999999999999843 2699999999876 444444
No 21
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.39 E-value=2.7e-13 Score=97.57 Aligned_cols=60 Identities=23% Similarity=0.555 Sum_probs=48.7
Q ss_pred CCCCCCCccccccccccCCCc---EEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceec
Q 026330 20 GSENYNGCFDCNICLDFAYDP---VVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPL 88 (240)
Q Consensus 20 ~~~~~~~~~~C~ICle~~~~p---v~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~ 88 (240)
+.+...+...|+||++.+.++ ++++|||.||..||.+|++.. ..||+||+.+...++.++
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~---------~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 8 TEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH---------DSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp CCTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT---------CSCTTTCCCCCCSCSCCC
T ss_pred CcccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC---------CcCcCcCCccCCcccCCC
Confidence 344556789999999999765 557999999999999999843 799999999877665544
No 22
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=4.1e-13 Score=92.90 Aligned_cols=49 Identities=33% Similarity=0.725 Sum_probs=42.6
Q ss_pred CCCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCc
Q 026330 22 ENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVC 76 (240)
Q Consensus 22 ~~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvC 76 (240)
+..++++.|+||++.+.+|++++|||.||..||.+|++.. .....||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~------~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETS------CGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHC------SSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcC------CCCCcCcCC
Confidence 4567789999999999999999999999999999999842 134789998
No 23
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.38 E-value=3e-13 Score=94.28 Aligned_cols=56 Identities=21% Similarity=0.509 Sum_probs=47.8
Q ss_pred Cccccccccc-cCCCc----EEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceecc
Q 026330 26 GCFDCNICLD-FAYDP----VVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLY 89 (240)
Q Consensus 26 ~~~~C~ICle-~~~~p----v~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~ 89 (240)
++..|+||++ .+.+| ++++|||.||..||.+|+... ...||+||+.+..++++++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~--------~~~CP~Cr~~~~~~~~~~~~ 62 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG--------AGNCPECGTPLRKSNFRVQL 62 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT--------SSSCTTTCCCCSSCCCEEEC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC--------CCcCCCCCCccccccceeec
Confidence 3678999999 88888 568999999999999998733 37899999999988887764
No 24
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.37 E-value=9e-14 Score=104.74 Aligned_cols=60 Identities=25% Similarity=0.626 Sum_probs=51.4
Q ss_pred CCCCccccccccccCCCcEEc-CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceeccCC
Q 026330 23 NYNGCFDCNICLDFAYDPVVT-LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGR 91 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~pv~t-~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~~~ 91 (240)
..++.+.|+||++.+.+|+++ +|||.||..||.+|+... ..||+||..+...++.+++..
T Consensus 18 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---------~~CP~Cr~~~~~~~l~~n~~l 78 (99)
T 2y43_A 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK---------TQCPTCCVTVTEPDLKNNRIL 78 (99)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC---------CBCTTTCCBCCGGGCEECHHH
T ss_pred hCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC---------CCCCCCCCcCChhhCCcCHHH
Confidence 345678999999999999998 899999999999999832 799999999988777776543
No 25
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2.1e-13 Score=95.27 Aligned_cols=53 Identities=34% Similarity=0.775 Sum_probs=45.8
Q ss_pred CCCCCCccccccccccCCCc-------EEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026330 21 SENYNGCFDCNICLDFAYDP-------VVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 21 ~~~~~~~~~C~ICle~~~~p-------v~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
.+...+...|+||++.+.++ +.++|||.||..||.+|++.. ..||+||..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---------NTCPTCRKKINH 68 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC---------SSCTTTCCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC---------CCCCCCCCccCc
Confidence 34566789999999999887 889999999999999999853 799999988753
No 26
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.36 E-value=1.5e-13 Score=111.82 Aligned_cols=58 Identities=31% Similarity=0.715 Sum_probs=48.8
Q ss_pred CCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcC-cceecc
Q 026330 24 YNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHT-TMVPLY 89 (240)
Q Consensus 24 ~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~-~l~p~~ 89 (240)
..+.+.|+||++.+.+|++++|||+||..||..|+... ...||+||..+... .+.+++
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~--------~~~CP~Cr~~~~~~~~l~~n~ 133 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQ--------VFSCPACRHDLGQNYIMIPNE 133 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT--------CCBCTTTCCBCCTTCCCCBCH
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhC--------CCcCCCCCccCCCCCCCCCCH
Confidence 34678999999999999999999999999999999843 26899999998766 455443
No 27
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.34 E-value=9e-13 Score=102.54 Aligned_cols=59 Identities=29% Similarity=0.607 Sum_probs=51.7
Q ss_pred CCCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceec
Q 026330 22 ENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPL 88 (240)
Q Consensus 22 ~~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~ 88 (240)
+..++.+.|+||++.+.+|+.++|||.||..||.+|+.... ..||+||..+..+++.++
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~--------~~CP~Cr~~~~~~~~~~~ 71 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG--------HKCPVDNEILLENQLFPD 71 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC--------SBCTTTCCBCCGGGCEEC
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCC--------CCCCCCCCCcCHHhcccC
Confidence 46677899999999999999999999999999999998653 489999999987766554
No 28
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.32 E-value=1.4e-12 Score=113.68 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=53.5
Q ss_pred CCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceeccCCC
Q 026330 23 NYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGRG 92 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~~~g 92 (240)
...+.+.|+||++.+.+||+++|||+||..||.+|+.... ..||+|+..+...+++|+....
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~--------~~cP~~~~~~~~~~l~~n~~l~ 265 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG--------HFNPVTRSPLTQEQLIPNLAMK 265 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTC--------SSCTTTCCCCCGGGCEECHHHH
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCC--------CCCcCCCCCCchhcCcccHHHH
Confidence 3457899999999999999999999999999999998532 4599999999988998886543
No 29
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=2.4e-13 Score=95.90 Aligned_cols=54 Identities=30% Similarity=0.791 Sum_probs=46.5
Q ss_pred CCCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcc
Q 026330 22 ENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTM 85 (240)
Q Consensus 22 ~~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l 85 (240)
+...+...|+||++.+.+ +.++|||.||..||.+|++. ...||+||..+...+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR---------HRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC---------CSSCHHHHHCTTCCCC
T ss_pred hcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC---------cCcCCCcCCcccCCCc
Confidence 455678999999999999 89999999999999999983 3899999998875543
No 30
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=1.6e-12 Score=97.56 Aligned_cols=66 Identities=21% Similarity=0.410 Sum_probs=53.7
Q ss_pred CCCccccccccccCCCcEEcC-CCCcccHHHHHHHHHhhccccCCCCCCCCCC--ccCC-CCcCcceeccCCC
Q 026330 24 YNGCFDCNICLDFAYDPVVTL-CGHLYCWPCIYKWLHVQSASLASDEHPQCPV--CKAD-ISHTTMVPLYGRG 92 (240)
Q Consensus 24 ~~~~~~C~ICle~~~~pv~t~-CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPv--Cr~~-v~~~~l~p~~~~g 92 (240)
..+++.|+||++.+.+||+++ |||+||..||.+|+.... .......||+ |+.. +...+++++....
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~---~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~ 73 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQ---KRKKKAYCPQIGCSHTDIRKSDLIQDEALR 73 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHH---TTTCCBCCCSTTCCCCCBCGGGEEECHHHH
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHcc---CcCCCCCCCcCcCcccccCHhhCcCCHHHH
Confidence 356799999999999999995 999999999999998541 1123479999 9887 8888898886544
No 31
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.31 E-value=4.8e-13 Score=106.89 Aligned_cols=49 Identities=31% Similarity=0.900 Sum_probs=43.9
Q ss_pred CCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026330 25 NGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
++++.|+||++.+.+|++++|||.||..||..|+... ..||+||..+..
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK---------IECPICRKDIKS 99 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTC---------SBCTTTCCBCCC
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcC---------CcCCCCCCcCCC
Confidence 4567899999999999999999999999999999843 789999998864
No 32
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.31 E-value=1.6e-12 Score=91.42 Aligned_cols=52 Identities=31% Similarity=0.705 Sum_probs=43.3
Q ss_pred CCCCCccccccccccCC---CcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026330 22 ENYNGCFDCNICLDFAY---DPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 22 ~~~~~~~~C~ICle~~~---~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
+..++...|+||++.+. .++.++|||.||..||.+|++.. ..||+||..+..
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~---------~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN---------KKCPICRVDIEA 63 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC---------SBCTTTCSBSCS
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC---------CCCcCcCccccC
Confidence 44566789999999884 45778999999999999999854 679999988754
No 33
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.30 E-value=1.2e-12 Score=100.19 Aligned_cols=51 Identities=27% Similarity=0.731 Sum_probs=45.5
Q ss_pred CCCccccccccccCCCcEEc-CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcC
Q 026330 24 YNGCFDCNICLDFAYDPVVT-LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHT 83 (240)
Q Consensus 24 ~~~~~~C~ICle~~~~pv~t-~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~ 83 (240)
.++++.|+||++.+.+|+.+ +|||.||..||..|+... ..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---------~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS---------KYCPICDVQVHKT 63 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC---------SBCTTTCCBSCSS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC---------CcCcCCCcccccc
Confidence 35678999999999999997 999999999999999832 8999999998764
No 34
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.4e-12 Score=88.32 Aligned_cols=50 Identities=36% Similarity=0.936 Sum_probs=42.4
Q ss_pred CCCCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCc
Q 026330 21 SENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVC 76 (240)
Q Consensus 21 ~~~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvC 76 (240)
.+..++.+.|+||++.+.+|++++|||.||..||.+|++.. .....||+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~------~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDL------ERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSS------CCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhc------CCCCCCCCC
Confidence 34566789999999999999999999999999999997631 134899998
No 35
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.28 E-value=4.3e-12 Score=106.40 Aligned_cols=63 Identities=16% Similarity=0.248 Sum_probs=54.9
Q ss_pred CCCCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceeccCC
Q 026330 21 SENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGR 91 (240)
Q Consensus 21 ~~~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~~~ 91 (240)
.....+.+.||||++.+.+||+++|||+||..||..|+.... ..||+|+..+...+++||...
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~--------~tcP~t~~~l~~~~L~pN~~L 162 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG--------HFDPVTRSPLTQDQLIPNLAM 162 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC--------SBCTTTCCBCCGGGCEECHHH
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCC--------CCCCCCcCCCChhhCcchHHH
Confidence 345678899999999999999999999999999999998531 369999999998899988654
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.28 E-value=1.5e-12 Score=101.51 Aligned_cols=58 Identities=34% Similarity=0.797 Sum_probs=51.6
Q ss_pred CCccccccccccCCCc-------EEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceeccCC
Q 026330 25 NGCFDCNICLDFAYDP-------VVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGR 91 (240)
Q Consensus 25 ~~~~~C~ICle~~~~p-------v~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~~~ 91 (240)
.+++.|+||++.+.+| +.++|||.||+.||.+|++.+ ..||+||+.+..+++.+++..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~~CP~Cr~~~~~~~l~~l~i~ 69 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---------NTCPTCRKKINHKRYHPIYIG 69 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC---------SBCTTTCCBCTTTCEEECBCS
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC---------CCCCCCCCcCccccccccccC
Confidence 4678999999999988 899999999999999999843 799999999998888887654
No 37
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.28 E-value=8.5e-13 Score=102.07 Aligned_cols=56 Identities=34% Similarity=0.743 Sum_probs=48.4
Q ss_pred CCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCccee
Q 026330 24 YNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVP 87 (240)
Q Consensus 24 ~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p 87 (240)
..+++.|+||++.+.+|+.++|||.||..||.+|+.... ..||+||..+...++.+
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~--------~~CP~Cr~~~~~~~~~~ 75 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMG--------SYCPSCRYPCFPTDLES 75 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC--------SBCTTTCCBCCGGGCBC
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCc--------CcCCCCCCCCCHhhccc
Confidence 345789999999999999999999999999999998532 78999999988766543
No 38
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.3e-12 Score=90.92 Aligned_cols=52 Identities=27% Similarity=0.646 Sum_probs=43.2
Q ss_pred CCCCCccccccccccCCCcE---EcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026330 22 ENYNGCFDCNICLDFAYDPV---VTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 22 ~~~~~~~~C~ICle~~~~pv---~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
++.+++..|+||++.+.++. +++|||.||..||.+|++.+ ..||+||..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~---------~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR---------KVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC---------SBCTTTCCBCSS
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC---------CcCCCcCccccc
Confidence 35567889999999997663 34999999999999999854 689999988753
No 39
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.26 E-value=3.7e-12 Score=85.36 Aligned_cols=47 Identities=34% Similarity=0.665 Sum_probs=41.2
Q ss_pred CccccccccccCCC----cEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026330 26 GCFDCNICLDFAYD----PVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 26 ~~~~C~ICle~~~~----pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
++..|+||++.+.+ +++++|||.||..||.+|++.. ..||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG---------YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT---------CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC---------CcCCCCCCcCC
Confidence 46789999999865 7788999999999999999854 89999998764
No 40
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.26 E-value=2.9e-13 Score=105.19 Aligned_cols=57 Identities=21% Similarity=0.521 Sum_probs=49.5
Q ss_pred CCCccccccccccCCCcEEc-CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceeccCC
Q 026330 24 YNGCFDCNICLDFAYDPVVT-LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGR 91 (240)
Q Consensus 24 ~~~~~~C~ICle~~~~pv~t-~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~~~ 91 (240)
+.+.+.|+||++.+.+|+++ +|||+||..||..|+. ..||+||..+...++.+++..
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-----------~~CP~Cr~~~~~~~~~~n~~l 76 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-----------TGCPVCYTPAWIQDLKINRQL 76 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-----------TBCSSSCCBCSCSSCCCCHHH
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-----------CCCcCCCCcCccccccccHHH
Confidence 35678999999999999999 9999999999999986 689999999877777666543
No 41
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=2.8e-12 Score=91.70 Aligned_cols=51 Identities=27% Similarity=0.600 Sum_probs=43.7
Q ss_pred CCCCccccccccccCCCc---EEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026330 23 NYNGCFDCNICLDFAYDP---VVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~p---v~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
..++...|+||++.+.++ +.++|||.||..||.+|++.. ..||+||+.+..
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~---------~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN---------RTCPICRADSGP 72 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC---------SSCTTTCCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC---------CcCcCcCCcCCC
Confidence 345678999999999877 678999999999999999854 789999988754
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.25 E-value=2.1e-12 Score=105.87 Aligned_cols=57 Identities=28% Similarity=0.669 Sum_probs=46.9
Q ss_pred CCCccccccccccCCCcEEc-CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc-Ccceec
Q 026330 24 YNGCFDCNICLDFAYDPVVT-LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH-TTMVPL 88 (240)
Q Consensus 24 ~~~~~~C~ICle~~~~pv~t-~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~-~~l~p~ 88 (240)
..+.+.|+||++.+.+|+.+ +|||.||..||.+|+... ...||+||..+.. ..+.++
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~--------~~~CP~Cr~~~~~~~~l~~~ 109 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSG--------NKECPTCRKKLVSKRSLRPD 109 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTT--------CCBCTTTCCBCCSGGGEEEC
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhC--------cCCCCCCCCcCCCcccCCcC
Confidence 34568999999999999987 999999999999999842 3789999999853 344443
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.25 E-value=5.4e-13 Score=103.05 Aligned_cols=53 Identities=26% Similarity=0.650 Sum_probs=46.0
Q ss_pred CCCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026330 22 ENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 22 ~~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
....+++.|+||++.+.+|++++|||+||..||.+|+... ...||+||..+..
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--------~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKA--------SLCCPFCRRRVSS 62 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTT--------TSBCTTTCCBCHH
T ss_pred cCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHC--------cCCCCCCCcccCc
Confidence 3455689999999999999999999999999999999742 3789999998863
No 44
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.24 E-value=4.2e-12 Score=94.55 Aligned_cols=50 Identities=26% Similarity=0.616 Sum_probs=42.9
Q ss_pred CCCccccccccccCCC---cEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026330 24 YNGCFDCNICLDFAYD---PVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 24 ~~~~~~C~ICle~~~~---pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
..++..|+||++.+.+ ++.++|||.||..||.+|++.. ..||+||..+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~---------~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS---------GTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT---------CBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC---------CcCcCcCccCCC
Confidence 4567899999999877 6778999999999999999843 799999988753
No 45
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.23 E-value=4.6e-12 Score=84.99 Aligned_cols=48 Identities=27% Similarity=0.746 Sum_probs=41.0
Q ss_pred CCccccccccccCCC---cEEcC-CCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026330 25 NGCFDCNICLDFAYD---PVVTL-CGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 25 ~~~~~C~ICle~~~~---pv~t~-CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
+++..|+||++.+.+ ++.++ |||.||..||.+|++.. ..||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~---------~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH---------STCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC---------CSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcC---------CcCcCCCCEeE
Confidence 456789999999977 67776 99999999999999743 78999998763
No 46
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.23 E-value=6.4e-12 Score=87.86 Aligned_cols=48 Identities=31% Similarity=0.883 Sum_probs=42.2
Q ss_pred CCccccccccccCCCc-EEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026330 25 NGCFDCNICLDFAYDP-VVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 25 ~~~~~C~ICle~~~~p-v~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
+++..|+||++.+.++ +.++|||.||..|+.+|++.. ..||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~---------~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN---------PTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS---------CSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc---------CcCcCCChhhH
Confidence 3467899999999997 778999999999999999843 79999998875
No 47
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.19 E-value=1.4e-11 Score=101.22 Aligned_cols=59 Identities=29% Similarity=0.607 Sum_probs=51.6
Q ss_pred CCCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceec
Q 026330 22 ENYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPL 88 (240)
Q Consensus 22 ~~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~ 88 (240)
+..++.+.|+||++.+.+|+.++|||+||..||.+|+.... ..||+||..+..+++.++
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~--------~~CP~Cr~~~~~~~~~~~ 71 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG--------HKCPVDNEILLENQLFPD 71 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC--------SBCTTTCCBCCGGGCEEC
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCC--------CCCCCCccCcchhhhhhh
Confidence 46678899999999999999999999999999999998653 599999999987766554
No 48
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.19 E-value=2e-11 Score=93.78 Aligned_cols=53 Identities=26% Similarity=0.495 Sum_probs=41.9
Q ss_pred CccccccccccCCCcE------------------EcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026330 26 GCFDCNICLDFAYDPV------------------VTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 26 ~~~~C~ICle~~~~pv------------------~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
.+..|+||++.+.+++ .++|||.||..||.+|+.... ......||+||+.+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~----~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN----KDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC----CSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc----CCCCCcCCCCCCccCC
Confidence 4568999999997654 679999999999999996321 1234799999988754
No 49
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.18 E-value=3.4e-12 Score=102.82 Aligned_cols=51 Identities=24% Similarity=0.580 Sum_probs=45.1
Q ss_pred CCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026330 23 NYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
..++.+.|+||++.+.+|+.++|||.||..||.+|+... ...||+||..+.
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~--------~~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSG--------PQNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGS--------CEECHHHHHTTC
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcC--------CCCCCCCCCccc
Confidence 556789999999999999999999999999999999743 268999998764
No 50
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.18 E-value=7.6e-12 Score=97.51 Aligned_cols=57 Identities=35% Similarity=0.820 Sum_probs=51.2
Q ss_pred CCCccccccccccCCCc-------EEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceecc
Q 026330 24 YNGCFDCNICLDFAYDP-------VVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLY 89 (240)
Q Consensus 24 ~~~~~~C~ICle~~~~p-------v~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~ 89 (240)
.++...|+||++.+.++ +.++|||.||..||.+|++.. ..||+||+.+..+++.++|
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---------NTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC---------SBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC---------CCCCCCCCcCChhcceeee
Confidence 35678899999999876 889999999999999999854 7999999999999998887
No 51
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.15 E-value=1.9e-11 Score=89.04 Aligned_cols=56 Identities=20% Similarity=0.449 Sum_probs=44.2
Q ss_pred CCCCCccccccccccCC--CcEEcC--CCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcc
Q 026330 22 ENYNGCFDCNICLDFAY--DPVVTL--CGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTM 85 (240)
Q Consensus 22 ~~~~~~~~C~ICle~~~--~pv~t~--CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l 85 (240)
+..++++.|+||++.+. +++.++ |||.||..|+.+++.. ....||+||+.+....+
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~--------~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD--------ENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS--------SCSBCTTTCCBCSSCSS
T ss_pred cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc--------CCCCCCCCCCccCCCch
Confidence 45677899999999884 455555 9999999999998752 23799999999876544
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.12 E-value=8.2e-12 Score=84.96 Aligned_cols=47 Identities=28% Similarity=0.498 Sum_probs=40.6
Q ss_pred CCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026330 24 YNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 24 ~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
..+.+.|+||++.+.+|++++|||+||..||..| ...||+||+.+..
T Consensus 3 e~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~------------~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS------------GMQCPICQAPWPL 49 (56)
T ss_dssp SCCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS------------SSSCSSCCSSSSC
T ss_pred cccCCCceEeCCccCCeEEcCCCCcccHHHHccC------------CCCCCcCCcEeec
Confidence 3567899999999999999999999999998762 2789999988753
No 53
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.10 E-value=6.2e-11 Score=82.48 Aligned_cols=55 Identities=13% Similarity=0.225 Sum_probs=49.8
Q ss_pred ccccccccccCCCcEEc-CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceeccC
Q 026330 27 CFDCNICLDFAYDPVVT-LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYG 90 (240)
Q Consensus 27 ~~~C~ICle~~~~pv~t-~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~~ 90 (240)
.+.|+||++.+.+||++ +|||+|+..||.+|++.+ .+||+++..+..++++++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~---------~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT---------GNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH---------SBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC---------CCCcCCcCCCChhhcEECcc
Confidence 47899999999999999 999999999999999854 56999999999999998854
No 54
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=5.1e-11 Score=86.92 Aligned_cols=50 Identities=30% Similarity=0.675 Sum_probs=40.8
Q ss_pred CccccccccccCCC--------------cEEc-CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCc
Q 026330 26 GCFDCNICLDFAYD--------------PVVT-LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTT 84 (240)
Q Consensus 26 ~~~~C~ICle~~~~--------------pv~t-~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~ 84 (240)
++..|+||++.+.+ ++++ +|||.||..||.+|++.+ ..||+||+.+...+
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~---------~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN---------NRCPLCQQDWVVQR 78 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC---------CBCTTTCCBCCEEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC---------CCCCCcCCCcchhh
Confidence 46779999999866 4455 599999999999999843 79999999886544
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.04 E-value=1.1e-10 Score=108.22 Aligned_cols=54 Identities=30% Similarity=0.743 Sum_probs=46.3
Q ss_pred CCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcce
Q 026330 25 NGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMV 86 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~ 86 (240)
+....|+||++.+.+|+.++|||.||+.|+..|+... ...||+||..+....++
T Consensus 330 ~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~--------~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 330 STFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESE--------GQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp TSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHT--------CSBCTTTCCBCCEEEEC
T ss_pred CCCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcC--------CCCCCCCCCccCCceeE
Confidence 3447899999999999999999999999999999843 28999999998765543
No 56
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.02 E-value=1.4e-10 Score=81.01 Aligned_cols=48 Identities=31% Similarity=0.661 Sum_probs=42.1
Q ss_pred CCccccccccccCCCcEEc--CCCCc-ccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026330 25 NGCFDCNICLDFAYDPVVT--LCGHL-YCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~t--~CGH~-FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
+++..|.||++...+++.+ +|||. +|+.|+.+|.+.. ..||+||+.+.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~---------~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN---------KPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT---------CCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC---------CcCCCcCcchh
Confidence 3567899999999999987 99999 8999999999733 78999999884
No 57
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.00 E-value=9.9e-11 Score=103.22 Aligned_cols=61 Identities=20% Similarity=0.287 Sum_probs=52.4
Q ss_pred CCCccccccccccCCCcEEc-CCCCcccHHHHHHHHHhhccccCCCCCCCCCC--ccCCCCcCcceeccCC
Q 026330 24 YNGCFDCNICLDFAYDPVVT-LCGHLYCWPCIYKWLHVQSASLASDEHPQCPV--CKADISHTTMVPLYGR 91 (240)
Q Consensus 24 ~~~~~~C~ICle~~~~pv~t-~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPv--Cr~~v~~~~l~p~~~~ 91 (240)
...++.||||++.+++||+. .|||+||..||.+|+... +...||+ |+..+...+++++...
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~-------~~~~CPvtGCr~~l~~~dL~pN~~L 241 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGY-------TTRDCPQAACSQVVSMRDFVRDPIM 241 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTC-------SCEECSGGGCSCEECGGGEEECHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhC-------CCCCCCcccccCcCchhhCCcCHHH
Confidence 34679999999999999985 999999999999999732 3368999 9999999999887654
No 58
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.96 E-value=2.7e-10 Score=79.36 Aligned_cols=48 Identities=29% Similarity=0.663 Sum_probs=41.7
Q ss_pred CCccccccccccCCCcEEc--CCCCc-ccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026330 25 NGCFDCNICLDFAYDPVVT--LCGHL-YCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~t--~CGH~-FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
+....|.||++...+++++ +|||. +|+.|+.+|.+.. ..||+||+.+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~---------~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG---------ASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT---------CBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC---------CcCCCcCchhh
Confidence 3457899999999999887 99998 9999999998732 79999999884
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.93 E-value=2.2e-10 Score=82.07 Aligned_cols=45 Identities=33% Similarity=0.682 Sum_probs=39.9
Q ss_pred CCccccccccccCCCcEEcCCCCc-ccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026330 25 NGCFDCNICLDFAYDPVVTLCGHL-YCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~t~CGH~-FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
+++..|+||++.+.+++.++|||. ||..|+..| ..||+||..+..
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-------------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-------------DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-------------SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-------------ccCCCcCcCccC
Confidence 456789999999999999999999 999999876 469999998853
No 60
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.92 E-value=5.9e-10 Score=85.74 Aligned_cols=48 Identities=25% Similarity=0.677 Sum_probs=40.1
Q ss_pred CccccccccccCCCc------------------EEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026330 26 GCFDCNICLDFAYDP------------------VVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 26 ~~~~C~ICle~~~~p------------------v~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
++..|+||++.+.++ +.++|||.||..||.+|+..+ ..||+||+.+..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~---------~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR---------QVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC---------SBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC---------CcCcCCCCccee
Confidence 457799999998765 446999999999999999843 789999998643
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=7.3e-10 Score=79.40 Aligned_cols=45 Identities=33% Similarity=0.686 Sum_probs=38.6
Q ss_pred CCccccccccccCCCcEEcCCCCc-ccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026330 25 NGCFDCNICLDFAYDPVVTLCGHL-YCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~t~CGH~-FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
++...|+||++.+.+++.++|||. ||..|+.+ ...||+||..+..
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-------------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-------------VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-------------CSBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-------------CCCCccCCceecC
Confidence 345789999999999999999999 99999942 1789999998854
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=3.2e-09 Score=75.10 Aligned_cols=47 Identities=26% Similarity=0.605 Sum_probs=40.3
Q ss_pred CCCCccccccccccCCCcEEcCCCCc-ccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026330 23 NYNGCFDCNICLDFAYDPVVTLCGHL-YCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~pv~t~CGH~-FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
..++...|.||++...+++.++|||. ||+.|+.. ...||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-------------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-------------FQQCPMCRQFVQE 58 (68)
T ss_dssp SCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-------------CSSCTTTCCCCCC
T ss_pred cCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-------------CCCCCCCCcchhc
Confidence 34457899999999999999999999 99999973 1789999998854
No 63
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=8.2e-09 Score=75.44 Aligned_cols=53 Identities=23% Similarity=0.545 Sum_probs=42.9
Q ss_pred CCCCccccccccccC--CCcEEcCCC-----CcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026330 23 NYNGCFDCNICLDFA--YDPVVTLCG-----HLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 23 ~~~~~~~C~ICle~~--~~pv~t~CG-----H~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
...++..|.||++.+ .++++++|. |.|+..||.+|+... +...||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~-------~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS-------DTRCCELCKYEFIM 70 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH-------CCSBCSSSCCBCCC
T ss_pred CCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC-------CCCCCCCCCCeeec
Confidence 344567899999877 457888996 999999999999964 23689999998754
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.74 E-value=5.4e-10 Score=81.32 Aligned_cols=44 Identities=27% Similarity=0.785 Sum_probs=38.5
Q ss_pred CccccccccccCCCcEEcCCCCc-ccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026330 26 GCFDCNICLDFAYDPVVTLCGHL-YCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 26 ~~~~C~ICle~~~~pv~t~CGH~-FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
++..|.||++...+++.++|||. ||..|+..| ..||+||..+..
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-------------~~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-------------QSCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-------------SBCTTTCCBCCE
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-------------CcCCCCCchhhC
Confidence 45689999999999999999999 999998654 479999998864
No 65
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.69 E-value=2.4e-09 Score=83.80 Aligned_cols=48 Identities=27% Similarity=0.718 Sum_probs=0.8
Q ss_pred CccccccccccCCCc-----------------EE-cCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026330 26 GCFDCNICLDFAYDP-----------------VV-TLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 26 ~~~~C~ICle~~~~p-----------------v~-t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
++..|+||++.+.++ ++ ++|+|.||..||.+|+..+ ..||+||+.+..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~---------~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR---------QVCPLDNREWEF 112 (117)
T ss_dssp CC-------------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC---------CcCCCCCCeeee
Confidence 346899999998763 22 4899999999999999854 789999988643
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.66 E-value=4.1e-09 Score=78.47 Aligned_cols=61 Identities=18% Similarity=0.502 Sum_probs=45.0
Q ss_pred CCccccccccccCCCcEEc---CCCCcccHHHHHHHHHhhccccCCCCCCCCCC--ccCC--CCcCcce
Q 026330 25 NGCFDCNICLDFAYDPVVT---LCGHLYCWPCIYKWLHVQSASLASDEHPQCPV--CKAD--ISHTTMV 86 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~t---~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPv--Cr~~--v~~~~l~ 86 (240)
++.++|+||++.+.+++.+ +|||.||..|+..+++..-. ........||. |+.. +..+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~-~g~~~~i~CP~~~C~~~~~~~~~~i~ 70 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIK-EGLETAISCPDAACPKQGHLQENEIE 70 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHH-HCSCCCEECSCTTCSSCCEECHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhh-cCCcccccCccccCCCCCccCHHHHH
Confidence 3578899999999887554 79999999999999985410 01112468999 9988 6655443
No 67
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.50 E-value=2.1e-08 Score=91.70 Aligned_cols=45 Identities=31% Similarity=0.753 Sum_probs=39.8
Q ss_pred CCccccccccccCCCcEEcCCCCc-ccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026330 25 NGCFDCNICLDFAYDPVVTLCGHL-YCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~t~CGH~-FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
+++..|+||++.+.+|+.++|||. ||..|+..| ..||+||..+..
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-------------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-------------RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-------------SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-------------CcCCCCCCCccC
Confidence 356889999999999999999999 999999765 479999998853
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.35 E-value=5.5e-07 Score=64.87 Aligned_cols=50 Identities=26% Similarity=0.644 Sum_probs=40.3
Q ss_pred CCccccccccccCCCcEE-cCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026330 25 NGCFDCNICLDFAYDPVV-TLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~-t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
+....|.||.+.+...+. ..|+|.|+..||.+|++.+ ...+||.|+....
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~-------~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSN-------AEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTC-------SSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhc-------CCCCCCCCcCcCC
Confidence 456889999999976544 3899999999999999843 2378999997764
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.15 E-value=2.1e-06 Score=59.22 Aligned_cols=50 Identities=20% Similarity=0.495 Sum_probs=40.5
Q ss_pred CCccccccccccCCCcEEcCCC--C---cccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026330 25 NGCFDCNICLDFAYDPVVTLCG--H---LYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~t~CG--H---~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
++...|.||++...++.++||. + .|+..||.+|+... +...||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~-------~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTIS-------RNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHH-------TCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhC-------CCCccCCCCCeee
Confidence 4567899999988777778865 4 89999999999854 2479999998764
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.97 E-value=2.9e-06 Score=77.51 Aligned_cols=59 Identities=31% Similarity=0.635 Sum_probs=42.0
Q ss_pred CCCccccccccccCCC----cEE----cCCCCcccHHHHHHHHHhhcccc--CCCCCCCCCCccCCCCc
Q 026330 24 YNGCFDCNICLDFAYD----PVV----TLCGHLYCWPCIYKWLHVQSASL--ASDEHPQCPVCKADISH 82 (240)
Q Consensus 24 ~~~~~~C~ICle~~~~----pv~----t~CGH~FC~~CI~~wl~~~s~~~--~~~~~~~CPvCr~~v~~ 82 (240)
.++..+|+||++.+.+ |.. ..|||.|+..||++|++....+. -+.-...||.||+.++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 3467899999999876 322 37999999999999998643111 00112579999998753
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.66 E-value=3.1e-05 Score=58.57 Aligned_cols=51 Identities=18% Similarity=0.417 Sum_probs=39.3
Q ss_pred ccccccccCCC-cEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCccee
Q 026330 29 DCNICLDFAYD-PVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVP 87 (240)
Q Consensus 29 ~C~ICle~~~~-pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p 87 (240)
.|++|.-.+.. ...+||.|.||..|+..|.+... ..||.|+..+..-+..+
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~--------k~Cp~C~~~V~rVe~~~ 54 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGD--------KMCPGCSDPVQRIEQCT 54 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTC--------CBCTTTCCBCSEEEEEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccC--------CCCcCcCCeeeeeEEec
Confidence 47888776654 45679999999999999987443 89999999986544433
No 72
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=97.16 E-value=0.00036 Score=71.00 Aligned_cols=62 Identities=13% Similarity=0.049 Sum_probs=54.9
Q ss_pred CCCCCccccccccccCCCcEEcCCC-CcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceeccCCC
Q 026330 22 ENYNGCFDCNICLDFAYDPVVTLCG-HLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGRG 92 (240)
Q Consensus 22 ~~~~~~~~C~ICle~~~~pv~t~CG-H~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~~~g 92 (240)
.+..++|.|||-.+.++|||+++.| ++|-..+|.+|+.. ..+||.-+.++..++++|+....
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~---------~~tdP~Tr~~L~~~~liPN~~Lk 948 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS---------DSTDPFNRMPLKLEDVTPNEELR 948 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT---------CCBCTTTCCBCCGGGCEECHHHH
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc---------CCCCCCCCCCCCcccccccHHHH
Confidence 4556789999999999999999998 69999999999984 37899999999999999997654
No 73
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.82 E-value=0.00077 Score=58.38 Aligned_cols=48 Identities=27% Similarity=0.650 Sum_probs=38.7
Q ss_pred ccccccccccCCCcEEc-CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026330 27 CFDCNICLDFAYDPVVT-LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 27 ~~~C~ICle~~~~pv~t-~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
-..|.||.+.+...+.= .|+|.|+..|+.+|++.+ ....||.|+....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~-------~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSN-------AEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTC-------SSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhC-------CCCCCCCCCCCCC
Confidence 57799999999866543 499999999999999743 2379999987653
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.26 E-value=0.0019 Score=47.85 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=27.4
Q ss_pred Ccccccccccc-CCCcEE--cCCCCcccHHHHHHH
Q 026330 26 GCFDCNICLDF-AYDPVV--TLCGHLYCWPCIYKW 57 (240)
Q Consensus 26 ~~~~C~ICle~-~~~pv~--t~CGH~FC~~CI~~w 57 (240)
++..|+||.+. ..+++. +.|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 45789999975 678888 899999999999874
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=92.96 E-value=0.11 Score=38.61 Aligned_cols=48 Identities=27% Similarity=0.527 Sum_probs=36.3
Q ss_pred CCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026330 24 YNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 24 ~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
.-+-+.|..|.-..+. .+.-..|-+|..|+...|.. ...||+|+..+.
T Consensus 25 ~~G~~nCKsCWf~~k~-LV~C~dHYLCl~CLtlmL~~---------SdrCpIC~~pLP 72 (99)
T 2ko5_A 25 HLGPQFCKSCWFENKG-LVECNNHYLCLNCLTLLLSV---------SNRCPICKMPLP 72 (99)
T ss_dssp CSCCCCCCSSCSCCSS-EEECSSCEEEHHHHHHTCSS---------SSEETTTTEECC
T ss_pred ccCcccChhhccccCC-eeeecchhhHHHHHHHHHhh---------ccCCcccCCcCC
Confidence 3456889999876663 34445599999999888874 389999998774
No 76
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=92.74 E-value=0.12 Score=37.49 Aligned_cols=39 Identities=28% Similarity=0.686 Sum_probs=31.6
Q ss_pred CCCccccccccccCCCcEEcCC----CCcccHHHHHHHHHhhc
Q 026330 24 YNGCFDCNICLDFAYDPVVTLC----GHLYCWPCIYKWLHVQS 62 (240)
Q Consensus 24 ~~~~~~C~ICle~~~~pv~t~C----GH~FC~~CI~~wl~~~s 62 (240)
....+.|.+|.+.+.+.-...| +|.||.+|-...++.+.
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~ 54 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQG 54 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHH
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcC
Confidence 3567899999999988644433 69999999999999764
No 77
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=91.39 E-value=0.2 Score=45.75 Aligned_cols=57 Identities=19% Similarity=0.399 Sum_probs=42.6
Q ss_pred CccccccccccCCCcEE-cCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCccee
Q 026330 26 GCFDCNICLDFAYDPVV-TLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVP 87 (240)
Q Consensus 26 ~~~~C~ICle~~~~pv~-t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p 87 (240)
-.+.|||-...++.|+. ..|.|.-|.+- ..|++... ......||+|.+.+..++++.
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl-~sfL~~~~----~~~~W~CPiC~k~~~~~dL~I 271 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDA-ALYLQMNE----KKPTWICPVCDKKAAYESLIL 271 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEH-HHHHHHHH----HSCCCBCTTTCSBCCGGGEEE
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCH-HHHHHHHh----hCCCeECCCCCcccCHHHeEE
Confidence 35789999999999977 58999977753 35555332 235699999999998776653
No 78
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=91.17 E-value=0.14 Score=46.93 Aligned_cols=56 Identities=30% Similarity=0.532 Sum_probs=41.7
Q ss_pred CccccccccccCCCcEE-cCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcce
Q 026330 26 GCFDCNICLDFAYDPVV-TLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMV 86 (240)
Q Consensus 26 ~~~~C~ICle~~~~pv~-t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~ 86 (240)
-.+.|||-...+..|+. ..|.|+-|.+- ..|++... ......||+|.+.+..++|+
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl-~sfL~~~~----~~~~W~CPIC~k~~~~~dL~ 304 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDA-LWFLHSQL----QIPTWQCPVCQIDIALENLA 304 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEH-HHHHHHHH----HSCCCBCTTTCCBCCGGGEE
T ss_pred EeecCCCccccccccCcCCcCCCcceECH-HHHHHHhh----cCCceeCCCCCcccCHHHee
Confidence 35889999999999987 48999977764 34555331 23569999999988766554
No 79
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=85.34 E-value=0.73 Score=31.72 Aligned_cols=49 Identities=20% Similarity=0.488 Sum_probs=34.2
Q ss_pred CCCccccccccccCCCcEEc--CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCC
Q 026330 24 YNGCFDCNICLDFAYDPVVT--LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKAD 79 (240)
Q Consensus 24 ~~~~~~C~ICle~~~~pv~t--~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~ 79 (240)
......|.||.+.-. ++. .|...|+..|+...+.. ...+...||.|++.
T Consensus 9 ~~~~~~C~vC~~~~~--ll~Cd~C~~~~H~~Cl~P~l~~-----~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 9 LAPGARCGVCGDGTD--VLRCTHCAAAFHWRCHFPAGTS-----RPGTGLRCRSCSGD 59 (66)
T ss_dssp CCTTCCCTTTSCCTT--CEECSSSCCEECHHHHCTTTCC-----CCSSSCCCTTTTTC
T ss_pred CCCCCCcCCCCCCCe--EEECCCCCCceecccCCCccCc-----CCCCCEECccccCC
Confidence 344567999986432 332 78899999999776652 22456899999754
No 80
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=76.51 E-value=2.9 Score=33.25 Aligned_cols=48 Identities=21% Similarity=0.504 Sum_probs=36.8
Q ss_pred CccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCc
Q 026330 26 GCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTT 84 (240)
Q Consensus 26 ~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~ 84 (240)
+.|.|..|...+.......=|..||..|..+... ..|..|...|...+
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~-----------~~C~~C~~~I~~~~ 79 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG-----------TKCAACQLGIPPTQ 79 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS-----------CBCTTTCCBCCTTS
T ss_pred ccCccCCCCCcCCCCCcccCCeeeeccccccccc-----------ccccccccccCCCc
Confidence 6799999998886654456789999999877665 67888887776543
No 81
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=73.92 E-value=2.1 Score=28.75 Aligned_cols=49 Identities=18% Similarity=0.440 Sum_probs=33.4
Q ss_pred CCCCccccccccccCCCcEEc--CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccC
Q 026330 23 NYNGCFDCNICLDFAYDPVVT--LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKA 78 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~pv~t--~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~ 78 (240)
+..++..|.||.+. .-++. .|...|+..|+..-+.. ...+...||.|.+
T Consensus 7 ~~~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~-----~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 7 ETDHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEK-----APEGKWSCPHCEK 57 (61)
T ss_dssp SSCCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCS-----CCCSSCCCTTGGG
T ss_pred cCCCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCC-----CCCCceECccccc
Confidence 44566789999874 22332 68889999998754331 2345689999975
No 82
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=72.91 E-value=12 Score=27.35 Aligned_cols=49 Identities=31% Similarity=0.553 Sum_probs=34.8
Q ss_pred CccccccccccCC-----CcEE--cCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026330 26 GCFDCNICLDFAY-----DPVV--TLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 26 ~~~~C~ICle~~~-----~pv~--t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
..-.|.||-|.+- ++.+ -.|+-..|.+|..-=.+ .+...||.|+...+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErk--------eG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERR--------EGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHH--------TSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHh--------ccCccccccCCcccc
Confidence 4578999999863 2222 26888889999864343 245899999988753
No 83
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=71.33 E-value=0.96 Score=31.44 Aligned_cols=53 Identities=23% Similarity=0.429 Sum_probs=34.3
Q ss_pred CCCCccccccccccCCCcEEc---CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCC
Q 026330 23 NYNGCFDCNICLDFAYDPVVT---LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADI 80 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~pv~t---~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v 80 (240)
..++...|.||...-..-..+ .|...|+..|+..-.. ........||.|+..+
T Consensus 14 ~~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~-----~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 14 WGNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAA-----PPEEMQWFCPKCANKI 69 (75)
T ss_dssp SSCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSC-----CCSSSCCCCTTTHHHH
T ss_pred cCCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCcc-----CCCCCCEEChhccCch
Confidence 445567799998765432233 6888999999853222 1112468999997654
No 84
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=70.46 E-value=2.8 Score=31.41 Aligned_cols=46 Identities=24% Similarity=0.363 Sum_probs=36.5
Q ss_pred CccccccccccCCC-cEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026330 26 GCFDCNICLDFAYD-PVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 26 ~~~~C~ICle~~~~-pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
+.|.|..|...+.. .....=|..||..|..+... ..|..|...|..
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~-----------~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA-----------VVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSC-----------CBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcC-----------ccCcccCCcCCc
Confidence 56999999998865 34457788999999876544 789999998875
No 85
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=70.09 E-value=2.3 Score=32.01 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=38.0
Q ss_pred CccccccccccCCC---cEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcc
Q 026330 26 GCFDCNICLDFAYD---PVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTM 85 (240)
Q Consensus 26 ~~~~C~ICle~~~~---pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l 85 (240)
+.|.|..|...+.+ .....=|..||..|..+.+... ..|-.|...|....+
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~---------~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNS---------GAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCC---------CSSSCSSCCSCCEES
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCC---------CccccCCCCcCchhe
Confidence 45899999998863 3445678899999998876511 289999998875443
No 86
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=68.72 E-value=3 Score=28.90 Aligned_cols=34 Identities=32% Similarity=0.525 Sum_probs=25.3
Q ss_pred CCCCccccccccccCCCcEEcCC-CCcccHHHHHHH
Q 026330 23 NYNGCFDCNICLDFAYDPVVTLC-GHLYCWPCIYKW 57 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~pv~t~C-GH~FC~~CI~~w 57 (240)
..++..-|.||.+.+. -.-+.| |-+||..|..+.
T Consensus 4 ~~ee~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 4 GSSGLPWCCICNEDAT-LRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp SCCCCSSCTTTCSCCC-EEETTTTSEEECSSHHHHH
T ss_pred cCcCCCeeEEeCCCCe-EEecCCCCceehHHHHHHH
Confidence 4456678999999855 234688 789999997653
No 87
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=67.77 E-value=5.2 Score=25.63 Aligned_cols=10 Identities=40% Similarity=0.926 Sum_probs=4.8
Q ss_pred HHHHHHHHHh
Q 026330 229 LFCCFLLCLI 238 (240)
Q Consensus 229 ~~~~~~l~l~ 238 (240)
=||++++|||
T Consensus 34 nfclilicll 43 (52)
T 1fjk_A 34 NFCLILIFLL 43 (52)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3445555554
No 88
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=67.55 E-value=3.3 Score=33.30 Aligned_cols=46 Identities=20% Similarity=0.507 Sum_probs=26.6
Q ss_pred CccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026330 26 GCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 26 ~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
+.|.|..|...+.......=|..||..|..+.+. .+|..|...|..
T Consensus 86 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~-----------~kC~~C~~~I~~ 131 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG-----------TKCAACQLGIPP 131 (182)
T ss_dssp STTSCTTTCCCCSSCCEEETTEEECHHHHHHTTS-----------CCCTTTCCCCCS
T ss_pred ccCccCCCCCccCCCceeECCEeeecCccccccc-----------cccccCCCccCC
Confidence 3456666665554332234456677777655333 678888776643
No 89
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=62.63 E-value=27 Score=25.96 Aligned_cols=34 Identities=26% Similarity=0.703 Sum_probs=26.7
Q ss_pred CccccccccccCC--CcEEcCCCCcccHHHHHHHHH
Q 026330 26 GCFDCNICLDFAY--DPVVTLCGHLYCWPCIYKWLH 59 (240)
Q Consensus 26 ~~~~C~ICle~~~--~pv~t~CGH~FC~~CI~~wl~ 59 (240)
+.|.|..|...+. +.....=|..||..|..+.+.
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHH
T ss_pred ccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhc
Confidence 6789999998883 345556788999999988776
No 90
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=61.40 E-value=8.9 Score=30.29 Aligned_cols=56 Identities=18% Similarity=0.368 Sum_probs=35.4
Q ss_pred CCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhcccc--CCCCCCCCCCccC
Q 026330 23 NYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASL--ASDEHPQCPVCKA 78 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~--~~~~~~~CPvCr~ 78 (240)
++..+..|.+|.+--.--.--.|-..||..||..-+....-+. ...+...||.|..
T Consensus 59 ~Dg~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 59 SDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TTSCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3445678999987543111127889999999987664211000 1245699999974
No 91
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=61.13 E-value=2.3 Score=28.46 Aligned_cols=50 Identities=20% Similarity=0.381 Sum_probs=32.0
Q ss_pred CCCCccccccccccCCCcEEc--CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCC
Q 026330 23 NYNGCFDCNICLDFAYDPVVT--LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKAD 79 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~pv~t--~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~ 79 (240)
....+..|.||.+.- -++. .|...|+..|+..-+.. ...+...||.|...
T Consensus 5 ~d~~~~~C~vC~~~g--~ll~Cd~C~~~fH~~Cl~ppl~~-----~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 5 SDHHMEFCRVCKDGG--ELLCCDTCPSSYHIHCLNPPLPE-----IPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCSSCTTTCCCS--SCBCCSSSCCCBCSSSSSSCCSS-----CCSSCCCCTTTTTT
T ss_pred ccCCCCcCCCCCCCC--CEEEcCCCCHHHcccccCCCcCc-----CCCCccCChhhcCc
Confidence 344567799998632 2222 57788999998643331 22356889999754
No 92
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=60.62 E-value=6.5 Score=29.47 Aligned_cols=48 Identities=17% Similarity=0.374 Sum_probs=36.5
Q ss_pred CccccccccccCC---CcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026330 26 GCFDCNICLDFAY---DPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 26 ~~~~C~ICle~~~---~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
+.|.|..|...+. ......=|..||..|..+.... ...|..|...|..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~---------~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ---------DGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC---------CEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC---------ccChhhcCCccCc
Confidence 5799999998885 3455677889999998876651 0289999988764
No 93
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=59.84 E-value=1.8 Score=35.85 Aligned_cols=50 Identities=14% Similarity=0.223 Sum_probs=32.8
Q ss_pred CCCccccccccccCCCcEEc--CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCC
Q 026330 24 YNGCFDCNICLDFAYDPVVT--LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADI 80 (240)
Q Consensus 24 ~~~~~~C~ICle~~~~pv~t--~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v 80 (240)
...+..|.+|.+--. ++. .|...|+..|+..-+.. ...+...||.|+..-
T Consensus 4 d~~~~~C~~C~~~g~--ll~Cd~C~~~~H~~Cl~p~l~~-----~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNGGD--LLCCEKCPKVFHLTCHVPTLLS-----FPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCCEE--EEECSSSSCEECTTTSSSCCSS-----CCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCCc--eEEcCCCCCccCCccCCCCCCC-----CCCCCEEeCceeCcc
Confidence 345567999985421 222 68889999998654441 224568999998654
No 94
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=58.95 E-value=7.5 Score=30.23 Aligned_cols=56 Identities=18% Similarity=0.369 Sum_probs=33.3
Q ss_pred CCCCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhcccc--CCCCCCCCCCccC
Q 026330 23 NYNGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASL--ASDEHPQCPVCKA 78 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~--~~~~~~~CPvCr~ 78 (240)
++..+..|.||.+--.-..--.|-..||..||.+-+....-+. ...+...|+.|..
T Consensus 53 ~Dg~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 53 SDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TTSCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 3344567999987532111126889999999987532110000 1245699999964
No 95
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=58.39 E-value=4.2 Score=29.08 Aligned_cols=47 Identities=26% Similarity=0.533 Sum_probs=34.5
Q ss_pred CccccccccccCCCc-EEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcC
Q 026330 26 GCFDCNICLDFAYDP-VVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHT 83 (240)
Q Consensus 26 ~~~~C~ICle~~~~p-v~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~ 83 (240)
+.|.|..|...+... ....=|..||..|..+.. ..+|..|...|...
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~-----------~~~C~~C~~~I~~~ 79 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRED-----------SPKCKGCFKAIVAG 79 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCC-----------CCBCSSSCCBCCSS
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhhc-----------CCccccCCCccccC
Confidence 568899998888653 345668899999875432 27899999888643
No 96
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=58.34 E-value=7.8 Score=26.75 Aligned_cols=49 Identities=20% Similarity=0.550 Sum_probs=30.8
Q ss_pred CCCccccccccccCCCcEEc--C--CC-CcccHHHHHHHHHhhccccCCCCCCCCCCccCCC
Q 026330 24 YNGCFDCNICLDFAYDPVVT--L--CG-HLYCWPCIYKWLHVQSASLASDEHPQCPVCKADI 80 (240)
Q Consensus 24 ~~~~~~C~ICle~~~~pv~t--~--CG-H~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v 80 (240)
.++...| ||.+.-....+. . |. ..|+..|+. |.. ...+...||.|+..-
T Consensus 13 ~~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg--l~~-----~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 13 PNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTT-----KPRGKWFCPRCSQES 66 (71)
T ss_dssp TTSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT--CSS-----CCSSCCCCTTTSSCS
T ss_pred CCCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC--cCc-----CCCCCEECCCCCccc
Confidence 3456677 898864443332 3 55 589999986 331 223568999997543
No 97
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=57.51 E-value=5.3 Score=27.56 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=21.2
Q ss_pred ccccccccccCCCcEE----cCCCCcccHHHHH
Q 026330 27 CFDCNICLDFAYDPVV----TLCGHLYCWPCIY 55 (240)
Q Consensus 27 ~~~C~ICle~~~~pv~----t~CGH~FC~~CI~ 55 (240)
+..|.+|...+.--.. -.||.+||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 3579999987753211 3799999999964
No 98
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=56.48 E-value=4.9 Score=28.42 Aligned_cols=32 Identities=22% Similarity=0.512 Sum_probs=23.0
Q ss_pred CCccccccccccCCCcEE----cCCCCcccHHHHHH
Q 026330 25 NGCFDCNICLDFAYDPVV----TLCGHLYCWPCIYK 56 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~----t~CGH~FC~~CI~~ 56 (240)
++...|.+|...|.--.. -.||.+||..|...
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 345679999988753211 37999999999743
No 99
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=56.36 E-value=4.7 Score=28.62 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=23.3
Q ss_pred CCccccccccccCCCcE----EcCCCCcccHHHHHH
Q 026330 25 NGCFDCNICLDFAYDPV----VTLCGHLYCWPCIYK 56 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv----~t~CGH~FC~~CI~~ 56 (240)
++...|.+|...|.--. --.||.+||..|...
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 45568999998875321 137999999999644
No 100
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=54.90 E-value=10 Score=27.52 Aligned_cols=56 Identities=16% Similarity=0.380 Sum_probs=34.3
Q ss_pred CCCCCccccccccccCCCcEE--cCCCCcccHHHHHHHHHhhccc-------cCCCCCCCCCCcc
Q 026330 22 ENYNGCFDCNICLDFAYDPVV--TLCGHLYCWPCIYKWLHVQSAS-------LASDEHPQCPVCK 77 (240)
Q Consensus 22 ~~~~~~~~C~ICle~~~~pv~--t~CGH~FC~~CI~~wl~~~s~~-------~~~~~~~~CPvCr 77 (240)
+....+..|.||...-.+-.. --|+-.|+..|+.+.=..+.++ ........|+.|.
T Consensus 10 e~~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 10 EPVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp CCCCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred cCCCCCcccCccccccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 344567889999854433211 2589999999998862222110 1123458999994
No 101
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=54.24 E-value=6 Score=28.89 Aligned_cols=46 Identities=22% Similarity=0.592 Sum_probs=29.3
Q ss_pred CCccccccccccCCCcEEc---C--CC-CcccHHHHHHHHHhhccccCCCCCCCCCCccCC
Q 026330 25 NGCFDCNICLDFAYDPVVT---L--CG-HLYCWPCIYKWLHVQSASLASDEHPQCPVCKAD 79 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~t---~--CG-H~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~ 79 (240)
.+...| ||.+.... ..+ . |. ..|+..|+. |.. ...+...||.|+..
T Consensus 34 ~e~~yC-iC~~~~~g-~MI~CD~~dC~~~WfH~~CVg--l~~-----~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 34 NEPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVG--LTT-----KPRGKWFCPRCSQE 85 (91)
T ss_dssp CCCBCS-TTCCBCCS-CCCCCSCSSCSCCCCCSTTTT--CSS-----CCCSSCCCTTTCCC
T ss_pred CCCcEE-ECCCCCCC-CEeEecCCCCCCCCEecccCC--cCc-----CCCCCEECcCccCc
Confidence 355667 99886543 244 3 54 579999985 321 12356899999754
No 102
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=54.19 E-value=4 Score=32.98 Aligned_cols=49 Identities=20% Similarity=0.463 Sum_probs=36.9
Q ss_pred CccccccccccCCC---cEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcC
Q 026330 26 GCFDCNICLDFAYD---PVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHT 83 (240)
Q Consensus 26 ~~~~C~ICle~~~~---pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~ 83 (240)
+.|.|..|...+.+ .....=|..||..|..+.+... ..|..|...|...
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~---------~~C~~C~~~I~~~ 82 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNS---------GACSACGQSIPAS 82 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCC---------EECTTTCCEECTT
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccccC---------CccccCCCccccC
Confidence 56999999988764 5556778999999987765410 1699999888653
No 103
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.31 E-value=4.8 Score=28.57 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=22.0
Q ss_pred CCccccccccccCCCcEE----cCCCCcccHHHHH
Q 026330 25 NGCFDCNICLDFAYDPVV----TLCGHLYCWPCIY 55 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~----t~CGH~FC~~CI~ 55 (240)
++...|.+|...|.--.. -.||.+||..|..
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 445679999988743211 3799999999853
No 104
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=52.99 E-value=5.4 Score=25.31 Aligned_cols=45 Identities=24% Similarity=0.541 Sum_probs=28.5
Q ss_pred ccccccccCCCcEEc---CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccC
Q 026330 29 DCNICLDFAYDPVVT---LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKA 78 (240)
Q Consensus 29 ~C~ICle~~~~pv~t---~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~ 78 (240)
.|.||.+.-.+..++ .|...|+..|+..=+. ....+...||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~-----~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALY-----EVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCC-----SCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcC-----CCCCCcEECcCccc
Confidence 478888654322222 6888999999864333 12235688999965
No 105
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=52.85 E-value=6.2 Score=23.90 Aligned_cols=17 Identities=41% Similarity=0.604 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHHHHHHH
Q 026330 221 SLNRISIFLFCCFLLCL 237 (240)
Q Consensus 221 ~l~~~~~f~~~~~~l~l 237 (240)
-|+|-+++++.+.|+.|
T Consensus 11 ELNRTSLy~GLLlifvl 27 (37)
T 3arc_L 11 ELNRTSLYLGLLLILVL 27 (37)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred eechhhHHHHHHHHHHH
Confidence 47888888877766665
No 106
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=52.45 E-value=4.6 Score=30.98 Aligned_cols=30 Identities=23% Similarity=0.516 Sum_probs=21.8
Q ss_pred CccccccccccCCCcE----EcCCCCcccHHHHH
Q 026330 26 GCFDCNICLDFAYDPV----VTLCGHLYCWPCIY 55 (240)
Q Consensus 26 ~~~~C~ICle~~~~pv----~t~CGH~FC~~CI~ 55 (240)
+...|.+|...|.--. --.||++||..|..
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 3467999998875321 13799999999964
No 107
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=52.12 E-value=0.88 Score=30.73 Aligned_cols=33 Identities=24% Similarity=0.662 Sum_probs=22.8
Q ss_pred ccccccccccCCCc-----EEc-C--CCCcccHHHHHHHHH
Q 026330 27 CFDCNICLDFAYDP-----VVT-L--CGHLYCWPCIYKWLH 59 (240)
Q Consensus 27 ~~~C~ICle~~~~p-----v~t-~--CGH~FC~~CI~~wl~ 59 (240)
.-.||-|...++.. +.- . |++.|||.|...|-.
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 35688887776542 221 3 899999999888765
No 108
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=51.74 E-value=2.8 Score=25.17 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=12.5
Q ss_pred CccccccccccCCCc
Q 026330 26 GCFDCNICLDFAYDP 40 (240)
Q Consensus 26 ~~~~C~ICle~~~~p 40 (240)
+.|.||||+..+..+
T Consensus 4 EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 4 EGFICPQCMKSLGSA 18 (34)
T ss_dssp EEEECTTTCCEESSH
T ss_pred cccCCcHHHHHcCCH
Confidence 469999999888765
No 109
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=51.66 E-value=6.1 Score=29.53 Aligned_cols=14 Identities=21% Similarity=0.847 Sum_probs=12.1
Q ss_pred cccHHHHHHHHHhh
Q 026330 48 LYCWPCIYKWLHVQ 61 (240)
Q Consensus 48 ~FC~~CI~~wl~~~ 61 (240)
.||..||.+|+...
T Consensus 42 GFCRNCLskWy~~a 55 (105)
T 2o35_A 42 GFCRNCLSNWYREA 55 (105)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 39999999999854
No 110
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=51.56 E-value=6.1 Score=29.47 Aligned_cols=14 Identities=36% Similarity=0.956 Sum_probs=11.9
Q ss_pred cccHHHHHHHHHhh
Q 026330 48 LYCWPCIYKWLHVQ 61 (240)
Q Consensus 48 ~FC~~CI~~wl~~~ 61 (240)
.||..||.+|+...
T Consensus 41 GFCRNCLskWy~~a 54 (104)
T 3fyb_A 41 DFCRNCLAKWLMEA 54 (104)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 39999999999843
No 111
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=51.48 E-value=5.9 Score=28.80 Aligned_cols=50 Identities=18% Similarity=0.362 Sum_probs=33.3
Q ss_pred CCCCccccccccccCCCcEEc--CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCC
Q 026330 23 NYNGCFDCNICLDFAYDPVVT--LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKAD 79 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~pv~t--~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~ 79 (240)
....+..|.+|.+.-. ++. .|.-.|+..|+..-+.. ...+...||.|...
T Consensus 21 ~d~n~~~C~vC~~~g~--LL~CD~C~~~fH~~Cl~PpL~~-----~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 21 LDDSATICRVCQKPGD--LVMCNQCEFCFHLDCHLPALQD-----VPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSCCSSSCSSSC--CEECTTSSCEECTTSSSTTCCC-----CCSSSCCCCSCCCC
T ss_pred cCCCCCcCcCcCCCCC--EEECCCCCCceecccCCCCCCC-----CcCCCcCCccccCC
Confidence 4456678999997532 222 67788999998654431 23456899999753
No 112
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=50.57 E-value=12 Score=25.22 Aligned_cols=45 Identities=20% Similarity=0.355 Sum_probs=33.3
Q ss_pred CCccccccccccCCC-cEEcCCCCcccH-HHHHHHHHhhccccCCCCCCCCCCccCCC
Q 026330 25 NGCFDCNICLDFAYD-PVVTLCGHLYCW-PCIYKWLHVQSASLASDEHPQCPVCKADI 80 (240)
Q Consensus 25 ~~~~~C~ICle~~~~-pv~t~CGH~FC~-~CI~~wl~~~s~~~~~~~~~~CPvCr~~v 80 (240)
.+.|.|..|...+.. .....=|..||. .|..+.+. .+|-.|...+
T Consensus 25 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~-----------~~C~~C~~~~ 71 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG-----------PKGFGRGGAE 71 (76)
T ss_dssp TTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSS-----------CCCSSCCCSS
T ss_pred CCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhC-----------ccCCCcCCce
Confidence 357999999988865 445567889999 69876554 7788886543
No 113
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=50.45 E-value=17 Score=25.31 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=31.9
Q ss_pred CCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcC
Q 026330 25 NGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHT 83 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~ 83 (240)
.....|..|.+.+.+.++..-+..|+..| ..|-.|+..+...
T Consensus 23 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~C-----------------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGAVVKARDKYRHPEC-----------------FVCADCNLNLKQK 64 (89)
T ss_dssp CSCCBCTTTCCBCCSCCEESSSCEECTTT-----------------CCCSSSCCCTTTS
T ss_pred CcCCCcccCCCEecccEEEECCceECccC-----------------CEecCCCCCCCCC
Confidence 44567999999888766667777777766 7788998887654
No 114
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=50.31 E-value=3.7 Score=30.13 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=29.9
Q ss_pred CCccccccccccCCCcEEc---CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccC
Q 026330 25 NGCFDCNICLDFAYDPVVT---LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKA 78 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~t---~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~ 78 (240)
.+...| ||...-.+..++ .|...|+..|+..-.. .......||.|+.
T Consensus 26 ~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~------~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQ------HIPDTYLCERCQP 75 (98)
T ss_dssp CCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTT------SCCSSBCCTTTSS
T ss_pred CCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCcc------CCCCCEECCCCcC
Confidence 345677 887765544444 6788888999743111 1223589999974
No 115
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=50.24 E-value=3.4 Score=37.46 Aligned_cols=53 Identities=17% Similarity=0.297 Sum_probs=0.0
Q ss_pred CccccccccccCCCc----EEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCC
Q 026330 26 GCFDCNICLDFAYDP----VVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADI 80 (240)
Q Consensus 26 ~~~~C~ICle~~~~p----v~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v 80 (240)
+...|.+|...+.-- .-..||+.||..|....+.... ......+.|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~--~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKY--LKDRMAKVCDGCFGEL 430 (434)
T ss_dssp -----------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCC--CCCCcCEecHHHHHHH
Confidence 356799999877522 1137999999999876654221 1112346777776544
No 116
>1yod_A Water-solublized phospholamban; protein design, water-soluble, de novo protein; 1.80A {Synthetic}
Probab=49.82 E-value=20 Score=20.55 Aligned_cols=12 Identities=17% Similarity=0.296 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhh
Q 026330 228 FLFCCFLLCLIV 239 (240)
Q Consensus 228 f~~~~~~l~l~~ 239 (240)
.=||++++||+|
T Consensus 12 vNfcLilICllL 23 (30)
T 1yod_A 12 INRCLREICQEL 23 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345555556543
No 117
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=49.22 E-value=6.8 Score=28.20 Aligned_cols=32 Identities=19% Similarity=0.218 Sum_probs=23.0
Q ss_pred CCccccccccccCCCcE--E--cCCCCcccHHHHHH
Q 026330 25 NGCFDCNICLDFAYDPV--V--TLCGHLYCWPCIYK 56 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv--~--t~CGH~FC~~CI~~ 56 (240)
.+...|.+|...|.--. . -.||.+||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 34567999998775321 1 38999999999744
No 118
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.87 E-value=8.8 Score=26.25 Aligned_cols=41 Identities=17% Similarity=0.243 Sum_probs=30.1
Q ss_pred CCccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026330 25 NGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
.....|..|.+.+.+.++..-+..|+..| ..|-.|+..+..
T Consensus 13 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~C-----------------F~C~~C~~~L~~ 53 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGVFVKLRDRHRHPEC-----------------YVCTDCGTNLKQ 53 (79)
T ss_dssp CCCCCCSSSCCCCCSSCEECSSCEECTTT-----------------TSCSSSCCCHHH
T ss_pred CCCCccccCCCCccCcEEEECcceeCcCc-----------------CeeCCCCCCCCC
Confidence 45578999999887766667777777666 678888877643
No 119
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=48.53 E-value=6 Score=28.53 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=22.9
Q ss_pred CccccccccccCCCc----EEcCCCCcccHHHHHHH
Q 026330 26 GCFDCNICLDFAYDP----VVTLCGHLYCWPCIYKW 57 (240)
Q Consensus 26 ~~~~C~ICle~~~~p----v~t~CGH~FC~~CI~~w 57 (240)
+...|.+|...+.-- .-..||++||..|...+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 346799999877522 11389999999997543
No 120
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=47.60 E-value=5.6 Score=32.13 Aligned_cols=48 Identities=15% Similarity=0.284 Sum_probs=31.4
Q ss_pred CccccccccccCCCcEE--cCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCC
Q 026330 26 GCFDCNICLDFAYDPVV--TLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADI 80 (240)
Q Consensus 26 ~~~~C~ICle~~~~pv~--t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v 80 (240)
++..|.+|.+-=. ++ -.|...|+..|+..-+.. ...+...||.|+..-
T Consensus 3 ~~~~C~~C~~~g~--ll~Cd~C~~~~H~~C~~p~l~~-----~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNGGE--LLCCEKCPKVFHLSCHVPTLTN-----FPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCCSS--CEECSSSSCEECTTTSSSCCSS-----CCSSCCCCTTTSCSS
T ss_pred CCCccccCCCCCe--eeecCCCCcccCccccCCCCCC-----CCCCCEECccccCcc
Confidence 3466999986522 22 268888999997654441 223568999998654
No 121
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.67 E-value=16 Score=25.58 Aligned_cols=42 Identities=17% Similarity=0.277 Sum_probs=32.1
Q ss_pred CccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCc
Q 026330 26 GCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTT 84 (240)
Q Consensus 26 ~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~ 84 (240)
....|..|.+.+.+.++..-|..|+..| ..|-.|+..+....
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~~~~~H~~C-----------------F~C~~C~~~L~~~~ 65 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVALGKSWHPEE-----------------FNCAHCKNTMAYIG 65 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEETTEEECTTT-----------------CBCSSSCCBCSSSC
T ss_pred CCCCCccCCCEecceEEEECCccccccC-----------------CccCCCCCCCCCCE
Confidence 3467999999888777777787777766 78999988876443
No 122
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.58 E-value=2.3 Score=27.84 Aligned_cols=48 Identities=19% Similarity=0.420 Sum_probs=30.2
Q ss_pred CCCccccccccccCCCcEEc--CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccC
Q 026330 24 YNGCFDCNICLDFAYDPVVT--LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKA 78 (240)
Q Consensus 24 ~~~~~~C~ICle~~~~pv~t--~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~ 78 (240)
..++..|.||.+.- .++. .|...|+..|+..-+.. ...+...||.|..
T Consensus 6 ~~~~~~C~vC~~~g--~ll~Cd~C~~~~H~~Cl~ppl~~-----~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKSG--QLLMCDTCSRVYHLDCLDPPLKT-----IPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCSS--CCEECSSSSCEECSSSSSSCCCS-----CCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCCC--eEEEcCCCCcceECccCCCCcCC-----CCCCceEChhhhC
Confidence 34567799999752 2222 68888888888643331 1234577888853
No 123
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=43.06 E-value=43 Score=23.07 Aligned_cols=53 Identities=17% Similarity=0.262 Sum_probs=31.8
Q ss_pred CCCCccccccccccCC-CcEEc---CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCC
Q 026330 23 NYNGCFDCNICLDFAY-DPVVT---LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADI 80 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~-~pv~t---~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v 80 (240)
...+...| ||..... +-..+ .|...|+..|+.--.... .......||.|+...
T Consensus 8 ~~~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~----~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 8 MALVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENA----VDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHH----TTCSBBCCTTTTTTS
T ss_pred ccCCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccc----cCCCeEECCCccccc
Confidence 33455667 8987663 22222 688899999984322111 112458999998643
No 124
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=42.13 E-value=9.4 Score=31.71 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=23.3
Q ss_pred CCCccccccccccCCCc----EEcCCCCcccHHHHHH
Q 026330 24 YNGCFDCNICLDFAYDP----VVTLCGHLYCWPCIYK 56 (240)
Q Consensus 24 ~~~~~~C~ICle~~~~p----v~t~CGH~FC~~CI~~ 56 (240)
..+...|.+|...+.-- ---.||+.||..|...
T Consensus 158 W~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 158 WADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 34567899999887522 1137999999999643
No 125
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=41.86 E-value=7.5 Score=29.81 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=21.9
Q ss_pred CCCccccccccccCCCc----EEcCCCCcccHHHHHHHH
Q 026330 24 YNGCFDCNICLDFAYDP----VVTLCGHLYCWPCIYKWL 58 (240)
Q Consensus 24 ~~~~~~C~ICle~~~~p----v~t~CGH~FC~~CI~~wl 58 (240)
+.+...|..|...+.-- .--.||.+||..|.....
T Consensus 16 d~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~ 54 (120)
T 1y02_A 16 TGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG 54 (120)
T ss_dssp ----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--
T ss_pred ccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCC
Confidence 34456799999887532 113799999999975443
No 126
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=41.35 E-value=39 Score=30.93 Aligned_cols=56 Identities=16% Similarity=0.330 Sum_probs=34.8
Q ss_pred CCCccccccccccCCCcEEc--CCCCcccHHHHHHHHHhhccc-cCCCCCCCCCCccCC
Q 026330 24 YNGCFDCNICLDFAYDPVVT--LCGHLYCWPCIYKWLHVQSAS-LASDEHPQCPVCKAD 79 (240)
Q Consensus 24 ~~~~~~C~ICle~~~~pv~t--~CGH~FC~~CI~~wl~~~s~~-~~~~~~~~CPvCr~~ 79 (240)
+..+..|.+|-+--.--.-- .|...||..||.+.+-..... ........|=+|...
T Consensus 90 DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 90 DGYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 33467899998754211111 688999999999987421100 112355899999754
No 127
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.08 E-value=26 Score=23.02 Aligned_cols=40 Identities=15% Similarity=0.395 Sum_probs=29.7
Q ss_pred ccccccccccCC--CcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcC
Q 026330 27 CFDCNICLDFAY--DPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHT 83 (240)
Q Consensus 27 ~~~C~ICle~~~--~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~ 83 (240)
...|..|.+.+. +.++..-|..|+..| ..|-.|+..+...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C-----------------F~C~~C~~~L~~~ 46 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHC-----------------FLCSGCEQPLGSR 46 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTT-----------------CBCTTTCCBTTTS
T ss_pred CCCCccCCCccccCccEEEECccccCccc-----------------CeECCCCCcCCCC
Confidence 357899998887 456767777777666 6788888877654
No 128
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=39.51 E-value=15 Score=24.62 Aligned_cols=40 Identities=28% Similarity=0.625 Sum_probs=27.8
Q ss_pred cccccccccCCCcEE---cCCCCcccHHHHHHHHHhhccccCCCCCCCCCCc
Q 026330 28 FDCNICLDFAYDPVV---TLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVC 76 (240)
Q Consensus 28 ~~C~ICle~~~~pv~---t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvC 76 (240)
..|-.|...+.+..+ ..|++.||.+|= .+++. .-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD-~fiHe--------~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCD-VFVHD--------SLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHH-HTTTT--------TSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchh-HHHHh--------hccCCcCC
Confidence 348888888866542 489999999994 23332 23789887
No 129
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=38.55 E-value=13 Score=31.24 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=23.2
Q ss_pred CCccccccccccCCCc----EEcCCCCcccHHHHHH
Q 026330 25 NGCFDCNICLDFAYDP----VVTLCGHLYCWPCIYK 56 (240)
Q Consensus 25 ~~~~~C~ICle~~~~p----v~t~CGH~FC~~CI~~ 56 (240)
.+...|.+|...+.-- ---.||..||..|...
T Consensus 162 ~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 162 VDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred ccCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 3456899999877532 1137999999999654
No 130
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=38.40 E-value=22 Score=23.02 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=29.5
Q ss_pred ccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcC
Q 026330 27 CFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHT 83 (240)
Q Consensus 27 ~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~ 83 (240)
...|..|.+.+.+.++..-|..|+..| ..|-.|+..+...
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C-----------------F~C~~C~~~L~~~ 44 (66)
T 1nyp_A 5 VPICGACRRPIEGRVVNAMGKQWHVEH-----------------FVCAKCEKPFLGH 44 (66)
T ss_dssp CCEETTTTEECCSCEECCTTSBEETTT-----------------CBCTTTCCBCSSS
T ss_pred CCCCcccCCEecceEEEECccccccCc-----------------CEECCCCCCCCCC
Confidence 356888988887777777777777666 6788888877543
No 131
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.96 E-value=29 Score=22.64 Aligned_cols=38 Identities=21% Similarity=0.352 Sum_probs=27.7
Q ss_pred cccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026330 28 FDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 28 ~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
..|..|.+.+.+..+..-+..|+..| ..|-.|+..+..
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C-----------------F~C~~C~~~L~~ 43 (70)
T 2d8z_A 6 SGCVQCKKPITTGGVTYREQPWHKEC-----------------FVCTACRKQLSG 43 (70)
T ss_dssp CBCSSSCCBCCSSEEESSSSEEETTT-----------------SBCSSSCCBCTT
T ss_pred CCCcccCCeeccceEEECccccCCCC-----------------CccCCCCCcCCc
Confidence 46888888887666666777776665 678888877753
No 132
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=37.75 E-value=5.5 Score=28.71 Aligned_cols=52 Identities=17% Similarity=0.271 Sum_probs=34.2
Q ss_pred CCCCccccccccccC--CCcEEc---CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026330 23 NYNGCFDCNICLDFA--YDPVVT---LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 23 ~~~~~~~C~ICle~~--~~pv~t---~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
..+++..|.||.+.- .+..++ .|.-.|+..|+..-+ ...+...||.|.....
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~-------vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY-------IPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS-------CCSSCCCCHHHHHHTT
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc-------cCCCceECccccCccc
Confidence 345678899999764 222233 688899999985421 2235689999976543
No 133
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=37.05 E-value=40 Score=24.91 Aligned_cols=20 Identities=25% Similarity=0.703 Sum_probs=13.0
Q ss_pred HHhhhHHHHHHHHHHHHHHh
Q 026330 219 VKSLNRISIFLFCCFLLCLI 238 (240)
Q Consensus 219 ~~~l~~~~~f~~~~~~l~l~ 238 (240)
.++=++.|++++||+++.++
T Consensus 80 k~~rkk~~i~l~~~~i~~~i 99 (109)
T 3hd7_B 80 SKARRKKIMIIICCVILGII 99 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCcceehHHHHHHHHHH
Confidence 34556677777777776654
No 134
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.79 E-value=21 Score=23.45 Aligned_cols=25 Identities=20% Similarity=0.510 Sum_probs=11.5
Q ss_pred ccccccccCCCcEEcCCCCcccHHH
Q 026330 29 DCNICLDFAYDPVVTLCGHLYCWPC 53 (240)
Q Consensus 29 ~C~ICle~~~~pv~t~CGH~FC~~C 53 (240)
.|..|.+.+.+.++..-+..|+..|
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~H~~C 31 (70)
T 2d8x_A 7 GCHQCGEFIIGRVIKAMNNSWHPEC 31 (70)
T ss_dssp BCSSSCCBCCSCCEEETTEEECTTT
T ss_pred cCccCCCEecceEEEECcccccccC
Confidence 4555555554444434444444333
No 135
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.66 E-value=34 Score=23.09 Aligned_cols=40 Identities=25% Similarity=0.478 Sum_probs=29.9
Q ss_pred cccccccccCC--CcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCc
Q 026330 28 FDCNICLDFAY--DPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTT 84 (240)
Q Consensus 28 ~~C~ICle~~~--~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~ 84 (240)
..|..|.+.+. +.++..-+..|+..| ..|-.|+..+....
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C-----------------F~C~~C~~~L~~~~ 57 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEYKGTVWHKDC-----------------FTCSNCKQVIGTGS 57 (82)
T ss_dssp CBCSSSCCBCCSSSCEEECSSCEEETTT-----------------CCCSSSCCCCTTSC
T ss_pred CcCccCCcccccCceEEEECcccccccc-----------------CchhhCCCccCCCc
Confidence 57999998887 556666777777666 77889988876543
No 136
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=36.27 E-value=28 Score=27.96 Aligned_cols=53 Identities=19% Similarity=0.350 Sum_probs=34.6
Q ss_pred CCCCccccccccccCCCcEEc-----CCCCcccHHHHHHHHHhhccc-cCCCCCCCCCCccC
Q 026330 23 NYNGCFDCNICLDFAYDPVVT-----LCGHLYCWPCIYKWLHVQSAS-LASDEHPQCPVCKA 78 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~pv~t-----~CGH~FC~~CI~~wl~~~s~~-~~~~~~~~CPvCr~ 78 (240)
++..+..|.||-+-- .++ .|-..||..||...+...... ........|-+|..
T Consensus 75 eDG~~~yC~wC~~Gg---~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 75 DDGYQSYCTICCGGR---EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp TTSSBSSCTTTSCCS---EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCCCcceeeEecCCC---eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 333467899998743 233 577899999999887642211 12345688999964
No 137
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.83 E-value=31 Score=22.70 Aligned_cols=40 Identities=13% Similarity=0.313 Sum_probs=28.9
Q ss_pred ccccccccccCCC----cEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcC
Q 026330 27 CFDCNICLDFAYD----PVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHT 83 (240)
Q Consensus 27 ~~~C~ICle~~~~----pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~ 83 (240)
...|..|.+.+.+ .++..-+..|+..| ..|-.|+..+...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~C-----------------F~C~~C~~~L~~~ 48 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDC-----------------FNCKKCSLSLVGR 48 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTT-----------------CBCSSSCCBCTTS
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCccc-----------------CEeccCCCcCCCC
Confidence 3568999988874 55666677777666 6788898877543
No 138
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.32 E-value=48 Score=21.50 Aligned_cols=34 Identities=21% Similarity=0.572 Sum_probs=26.1
Q ss_pred CccccccccccCCC-cEEcCCCCcccHHHHHHHHH
Q 026330 26 GCFDCNICLDFAYD-PVVTLCGHLYCWPCIYKWLH 59 (240)
Q Consensus 26 ~~~~C~ICle~~~~-pv~t~CGH~FC~~CI~~wl~ 59 (240)
+.|.|..|...+.. .....=|..||..|..+.+.
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 30 DCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp TTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHT
T ss_pred CcCEECCCCCCCCCCccEeECCEEECHHHhHHHhc
Confidence 56899999988754 34456688999999887765
No 139
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=33.84 E-value=3 Score=29.45 Aligned_cols=16 Identities=25% Similarity=0.746 Sum_probs=13.3
Q ss_pred CCCCcccHHHHHHHHH
Q 026330 44 LCGHLYCWPCIYKWLH 59 (240)
Q Consensus 44 ~CGH~FC~~CI~~wl~ 59 (240)
.||+.||+.|...|-.
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 5899999999877643
No 140
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.79 E-value=24 Score=23.94 Aligned_cols=40 Identities=28% Similarity=0.507 Sum_probs=29.2
Q ss_pred cccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCc
Q 026330 28 FDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTT 84 (240)
Q Consensus 28 ~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~ 84 (240)
..|..|.+.+.+.++..-+..|+..| ..|-.|+..+...+
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~wH~~C-----------------F~C~~C~~~L~~~~ 55 (81)
T 1v6g_A 16 TRCFSCDQFIEGEVVSALGKTYHPDC-----------------FVCAVCRLPFPPGD 55 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTTT-----------------SSCSSSCCCCCSSS
T ss_pred CcCccccCEeccceEEECCceeCccC-----------------CccccCCCCCCCCC
Confidence 37889998887666666677766666 77888988876443
No 141
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=33.67 E-value=22 Score=21.65 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=17.0
Q ss_pred HHhhhHHHHHHHHHHHHHHhh
Q 026330 219 VKSLNRISIFLFCCFLLCLIV 239 (240)
Q Consensus 219 ~~~l~~~~~f~~~~~~l~l~~ 239 (240)
|.-|.++..||+++.++..++
T Consensus 4 D~qL~~lan~lG~~~~~LIVl 24 (37)
T 2lat_A 4 DVQLAIFANMLGVSLFLLVVL 24 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556888999999998887665
No 142
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=33.31 E-value=10 Score=31.01 Aligned_cols=48 Identities=17% Similarity=0.334 Sum_probs=29.6
Q ss_pred ccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCC
Q 026330 27 CFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKAD 79 (240)
Q Consensus 27 ~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~ 79 (240)
+..|.+|.+--.--.--.|...|+..|+..-+. ....+...||.|+..
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~-----~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQ-----DVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCS-----SCCCTTCCTTTTSCS
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcc-----cCCCCCCCCcCccCC
Confidence 356889986532111125777888999854333 122456899999765
No 143
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.39 E-value=33 Score=22.94 Aligned_cols=39 Identities=13% Similarity=0.323 Sum_probs=29.7
Q ss_pred cccccccccCCC----cEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcC
Q 026330 28 FDCNICLDFAYD----PVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHT 83 (240)
Q Consensus 28 ~~C~ICle~~~~----pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~ 83 (240)
..|..|.+.+.+ .++..-+..|+..| ..|-.|+..+...
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C-----------------F~C~~C~~~L~~~ 48 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSEC-----------------FNCGKCSVSLVGK 48 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGG-----------------CBCTTTCCBCSSS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCccc-----------------CChhhCCCcCCCC
Confidence 569999998885 56666777777777 7789998887643
No 144
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.32 E-value=33 Score=23.01 Aligned_cols=39 Identities=18% Similarity=0.344 Sum_probs=27.2
Q ss_pred cccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcC
Q 026330 28 FDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHT 83 (240)
Q Consensus 28 ~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~ 83 (240)
..|..|.+.+.+.++..-+..|+..| ..|-.|+..+...
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~C-----------------F~C~~C~~~L~~~ 54 (80)
T 2cuq_A 16 PRCARCSKTLTQGGVTYRDQPWHREC-----------------LVCTGCQTPLAGQ 54 (80)
T ss_dssp CCCTTTCCCCCSCCEESSSSEECTTT-----------------CBCSSSCCBCTTC
T ss_pred CcCCCCCCEecCcEEEECCchhhhhh-----------------CCcccCCCcCCCC
Confidence 56888888776665666666666655 6788888877543
No 145
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.27 E-value=36 Score=23.12 Aligned_cols=41 Identities=15% Similarity=0.357 Sum_probs=29.1
Q ss_pred CccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcC
Q 026330 26 GCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHT 83 (240)
Q Consensus 26 ~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~ 83 (240)
....|.-|.+.+.+.++..-|..|+..| ..|-.|+..+...
T Consensus 14 ~~~~C~~C~~~I~~~~v~a~~~~~H~~C-----------------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 14 GKYICQKCHAIIDEQPLIFKNDPYHPDH-----------------FNCANCGKELTAD 54 (79)
T ss_dssp CCCBCTTTCCBCCSCCCCCSSSCCCTTT-----------------SBCSSSCCBCCTT
T ss_pred CCCCCccCCCEecceEEEECcceeCCCC-----------------CEeCCCCCccCCC
Confidence 3467888888887666666676666555 6788888877644
No 146
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=32.03 E-value=38 Score=27.09 Aligned_cols=34 Identities=26% Similarity=0.539 Sum_probs=26.8
Q ss_pred CccccccccccCCCc-EEcCCCCcccHHHHHHHHH
Q 026330 26 GCFDCNICLDFAYDP-VVTLCGHLYCWPCIYKWLH 59 (240)
Q Consensus 26 ~~~~C~ICle~~~~p-v~t~CGH~FC~~CI~~wl~ 59 (240)
+.|.|..|...+.+. ....=|..||..|..+...
T Consensus 33 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~ 67 (192)
T 1b8t_A 33 SCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYG 67 (192)
T ss_dssp TTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHS
T ss_pred CCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcC
Confidence 679999999888654 4445688999999988765
No 147
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.83 E-value=2.9 Score=30.42 Aligned_cols=51 Identities=20% Similarity=0.385 Sum_probs=32.2
Q ss_pred CCCCccccccccccCCCc-EEc--CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccC
Q 026330 23 NYNGCFDCNICLDFAYDP-VVT--LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKA 78 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~p-v~t--~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~ 78 (240)
...++..|.||.+.-.+. +++ .|...|+..|+..-+. ....+...||.|..
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~-----~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLP-----EIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCS-----SCCSSCCCCHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcc-----cCCCCCcCCccCcC
Confidence 445567899998765322 232 6888888888753332 12234588999964
No 148
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=31.18 E-value=14 Score=27.29 Aligned_cols=48 Identities=25% Similarity=0.420 Sum_probs=31.0
Q ss_pred CCccccccccccCCC-cEE--cCCCCcccHHHHHHHHHhhccccCCCCCCCCCCcc
Q 026330 25 NGCFDCNICLDFAYD-PVV--TLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCK 77 (240)
Q Consensus 25 ~~~~~C~ICle~~~~-pv~--t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr 77 (240)
.++..|.||.+.-.. ..+ ..|+..|+..|+...+.. .......||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~-----~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTP-----LKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCT-----TTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcccc-----ccccCccCCcCC
Confidence 457789999876542 222 379999999998654331 123456777664
No 149
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=31.05 E-value=5.9 Score=26.78 Aligned_cols=47 Identities=17% Similarity=0.407 Sum_probs=30.6
Q ss_pred CCccccccccccCCCcEEc--CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccC
Q 026330 25 NGCFDCNICLDFAYDPVVT--LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKA 78 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~t--~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~ 78 (240)
.++..|.||.+.- -++. .|...|+..|+..-+.. ...+...||.|..
T Consensus 6 ~~~~~C~vC~~~g--~ll~CD~C~~~fH~~Cl~ppl~~-----~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDGG--ELICCDGCPRAFHLACLSPPLRE-----IPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCCS--SCEECSSCCCEECTTTSSSCCSS-----CCSSCCCCHHHHH
T ss_pred CCCCCCccCCCCC--CEEEcCCCChhhcccccCCCcCc-----CCCCCeECccccC
Confidence 4567899999742 2222 68888889998643331 1235688999964
No 150
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=30.87 E-value=11 Score=27.40 Aligned_cols=48 Identities=25% Similarity=0.544 Sum_probs=28.3
Q ss_pred CCCCccccccccccCCCcEEc--CCC---CcccHHHHHHHHHhhccccCCCCCCCCCC-ccC
Q 026330 23 NYNGCFDCNICLDFAYDPVVT--LCG---HLYCWPCIYKWLHVQSASLASDEHPQCPV-CKA 78 (240)
Q Consensus 23 ~~~~~~~C~ICle~~~~pv~t--~CG---H~FC~~CI~~wl~~~s~~~~~~~~~~CPv-Cr~ 78 (240)
+.++...| ||...-....+. .|. ..|+..|+. |.. ...+...||. |+.
T Consensus 22 ~~~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVg--l~~-----~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 22 NNQEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVG--LKQ-----APKGKWYCSKDCKE 75 (90)
T ss_dssp --CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSS--CSS-----CTTSCCCSSHHHHH
T ss_pred CCCCCcEE-EeCCCCCCCEEEecCCCCccccCcCccCC--CCc-----CCCCCccCChhhcc
Confidence 34456777 999754443332 333 578888985 221 2235689999 863
No 151
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.83 E-value=30 Score=23.10 Aligned_cols=40 Identities=20% Similarity=0.425 Sum_probs=29.1
Q ss_pred ccccccccccCC-CcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcC
Q 026330 27 CFDCNICLDFAY-DPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHT 83 (240)
Q Consensus 27 ~~~C~ICle~~~-~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~ 83 (240)
...|..|.+.+. ...+..-+..|+..| ..|-.|+..+...
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~C-----------------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFC-----------------LKCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTT-----------------CBCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCC-----------------CCCCCCCCccCCC
Confidence 467999999887 455556677766666 7788998887643
No 152
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.80 E-value=35 Score=22.36 Aligned_cols=39 Identities=18% Similarity=0.369 Sum_probs=28.0
Q ss_pred cccccccccCC--CcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcC
Q 026330 28 FDCNICLDFAY--DPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHT 83 (240)
Q Consensus 28 ~~C~ICle~~~--~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~ 83 (240)
..|..|.+.+. +.++..-|..|+..| ..|-.|+..+...
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C-----------------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHETC-----------------FICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETTT-----------------TCCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceEEEECcCeecccC-----------------CcccccCCccCCC
Confidence 46889998887 346666677766665 6788888877544
No 153
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=29.76 E-value=4.6 Score=35.90 Aligned_cols=46 Identities=22% Similarity=0.484 Sum_probs=34.8
Q ss_pred CCccccccccccCCCcEEc----CCC--CcccHHHHHHHHHhhccccCCCCCCCCCCccCC
Q 026330 25 NGCFDCNICLDFAYDPVVT----LCG--HLYCWPCIYKWLHVQSASLASDEHPQCPVCKAD 79 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~t----~CG--H~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~ 79 (240)
...-.||+|-....-.++. .=| +.+|.-|-..|-..+ .+||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R---------~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVR---------IKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCT---------TSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecC---------cCCcCCCCC
Confidence 4568999999988766554 234 577999999997744 899999765
No 154
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.70 E-value=60 Score=21.14 Aligned_cols=34 Identities=26% Similarity=0.566 Sum_probs=26.9
Q ss_pred CccccccccccCCCc-EEcCCCCcccHHHHHHHHH
Q 026330 26 GCFDCNICLDFAYDP-VVTLCGHLYCWPCIYKWLH 59 (240)
Q Consensus 26 ~~~~C~ICle~~~~p-v~t~CGH~FC~~CI~~wl~ 59 (240)
+.|.|..|...+... ....=|..||..|..+.+.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 32 GCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp TTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred cCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 569999999888543 4456789999999988775
No 155
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=29.59 E-value=81 Score=22.64 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=21.3
Q ss_pred EcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcCcceeccCCC
Q 026330 42 VTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTTMVPLYGRG 92 (240)
Q Consensus 42 ~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~~l~p~~~~g 92 (240)
.++|..-||..|- ..|.+| +..+.|-..|++.
T Consensus 19 ~T~C~~CyCKkCc----------------~HCq~C---F~~KGLGIsYgRk 50 (86)
T 1tac_A 19 KTASNRAHAKKSA----------------YHSQVA---FITKGLGISYGRK 50 (86)
T ss_dssp TTCSSCSSTTTTT----------------TTCCCS---CSSTTSSSSSCCC
T ss_pred CCCCCCceecchh----------------hhhhHH---HccCCCceEeccc
Confidence 4689988998884 567777 5455554455544
No 156
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.67 E-value=33 Score=23.04 Aligned_cols=39 Identities=15% Similarity=0.289 Sum_probs=26.5
Q ss_pred cccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcC
Q 026330 28 FDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHT 83 (240)
Q Consensus 28 ~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~ 83 (240)
..|..|.+.+.+.++..-+..|+..| ..|-.|+..+...
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~C-----------------F~C~~C~~~L~~~ 54 (80)
T 1x3h_A 16 PKCGGCNRPVLENYLSAMDTVWHPEC-----------------FVCGDCFTSFSTG 54 (80)
T ss_dssp CBCTTTCCBCCSSCEEETTEEECTTT-----------------CBCSSSCCBSCSS
T ss_pred CccccCCCeecceeEEECCCeEecCc-----------------CChhhCCCCCCCC
Confidence 46888888777655555565555555 6788888877544
No 157
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=27.54 E-value=10 Score=25.16 Aligned_cols=45 Identities=22% Similarity=0.585 Sum_probs=27.9
Q ss_pred CCccccccccccCCCcEEc---C--CC-CcccHHHHHHHHHhhccccCCCCCCCCCCccC
Q 026330 25 NGCFDCNICLDFAYDPVVT---L--CG-HLYCWPCIYKWLHVQSASLASDEHPQCPVCKA 78 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~t---~--CG-H~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~ 78 (240)
++...| ||.+.-.. ..+ . |. ..|+..|+. +.. ...+...||.|++
T Consensus 8 ~e~~~C-~C~~~~~g-~mi~CD~cdC~~~wfH~~Cvg--l~~-----~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVG--LTT-----KPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEECCS-EEEECSCTTCSSCEEETGGGT--CSS-----CCSSCCCCHHHHC
T ss_pred CCCCEE-ECCCcCCC-CEEEeCCCCCCCceEehhcCC--CCc-----CCCCCEECcCccC
Confidence 345667 89886443 344 3 54 579999986 331 2235688998864
No 158
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=27.14 E-value=7 Score=26.11 Aligned_cols=54 Identities=24% Similarity=0.396 Sum_probs=33.5
Q ss_pred CCccccccccccCC---CcEEc--CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCC
Q 026330 25 NGCFDCNICLDFAY---DPVVT--LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADI 80 (240)
Q Consensus 25 ~~~~~C~ICle~~~---~pv~t--~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v 80 (240)
.++..|.||.+... +.+++ .|...|+..|+..-+.... ....+...|+.|....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~--~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSV--IDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHH--HHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccc--cCCCCCEECCCCcCcc
Confidence 45678999997632 23333 7888999999865332100 0023568999997543
No 159
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.01 E-value=45 Score=23.12 Aligned_cols=34 Identities=26% Similarity=0.660 Sum_probs=19.9
Q ss_pred CccccccccccCCCc-EEcCCCCcccHHHHHHHHH
Q 026330 26 GCFDCNICLDFAYDP-VVTLCGHLYCWPCIYKWLH 59 (240)
Q Consensus 26 ~~~~C~ICle~~~~p-v~t~CGH~FC~~CI~~wl~ 59 (240)
+.|.|..|...+.+. ....=|..||..|..+.+.
T Consensus 41 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~ 75 (91)
T 2d8y_A 41 SCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFK 75 (91)
T ss_dssp TTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSC
T ss_pred CCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhC
Confidence 456777776666542 3334566777777655443
No 160
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.93 E-value=51 Score=21.93 Aligned_cols=37 Identities=19% Similarity=0.442 Sum_probs=28.3
Q ss_pred cccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026330 28 FDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 28 ~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
..|.-|...+.+.++..-+..|+..| ..|-.|+..+.
T Consensus 6 ~~C~~C~~~I~~~~v~a~~~~wH~~C-----------------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITGRVLEAGEKHYHPSC-----------------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSSCCBCCSSCCBCTTT-----------------SCCSSSCCCCC
T ss_pred CCcccCCCEecCeeEEeCCCCCCCCc-----------------CEeCCCCCCCC
Confidence 46888998887766667777777666 67888888876
No 161
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=26.86 E-value=57 Score=23.69 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=27.0
Q ss_pred CccccccccccCCC---cEEcCCCCcccHHHHHHHHH
Q 026330 26 GCFDCNICLDFAYD---PVVTLCGHLYCWPCIYKWLH 59 (240)
Q Consensus 26 ~~~~C~ICle~~~~---pv~t~CGH~FC~~CI~~wl~ 59 (240)
+.|.|..|...+.+ .....=|..||..|..+.+.
T Consensus 29 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGG 65 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHT
T ss_pred hcCcccccCCchhcCCCeeEEECCeeechHHHHHHhC
Confidence 57999999998864 44456688999999988776
No 162
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=26.67 E-value=27 Score=21.16 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=16.6
Q ss_pred HHhhhHHHHHHHHHHHHHHhh
Q 026330 219 VKSLNRISIFLFCCFLLCLIV 239 (240)
Q Consensus 219 ~~~l~~~~~f~~~~~~l~l~~ 239 (240)
|.-|.++..||+++.++..++
T Consensus 4 D~qL~~lan~lG~~~~~LIvl 24 (36)
T 1rkl_A 4 DEQLNSLAITFGIVMMTLIVI 24 (36)
T ss_dssp SCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456888999999988877655
No 163
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.63 E-value=34 Score=23.09 Aligned_cols=37 Identities=24% Similarity=0.358 Sum_probs=27.2
Q ss_pred cccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCC
Q 026330 28 FDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADIS 81 (240)
Q Consensus 28 ~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~ 81 (240)
..|..|.+.+.+.++..-+..|+..| ..|-.|+..+.
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~C-----------------F~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMTGPFMVAGEFKYHPEC-----------------FACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCCSCCBCCTTCCBCTTS-----------------CBCTTTCCBCC
T ss_pred CcCccCCCCcCceEEEECCceecccc-----------------CCccCCCCccC
Confidence 46888888887666666676666655 67888888775
No 164
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=25.37 E-value=52 Score=26.25 Aligned_cols=43 Identities=23% Similarity=0.440 Sum_probs=30.7
Q ss_pred CccccccccccCCC-cEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCC
Q 026330 26 GCFDCNICLDFAYD-PVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKAD 79 (240)
Q Consensus 26 ~~~~C~ICle~~~~-pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~ 79 (240)
+.|.|..|...+.. .....=|..||..|..+.+. .+|-.|...
T Consensus 141 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~-----------~kc~~C~~~ 184 (192)
T 1b8t_A 141 SCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFG-----------PKGFGFGQG 184 (192)
T ss_dssp TTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTC-----------CCCCCCCCC
T ss_pred hcCCccccCCCCCCCcccccCCEEeCHHHHHHhcC-----------CcCCCCCCc
Confidence 45788888777743 34456678899999877665 778888654
No 165
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=25.09 E-value=10 Score=24.97 Aligned_cols=47 Identities=19% Similarity=0.443 Sum_probs=29.3
Q ss_pred CccccccccccCCCcEEc--CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCC
Q 026330 26 GCFDCNICLDFAYDPVVT--LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKAD 79 (240)
Q Consensus 26 ~~~~C~ICle~~~~pv~t--~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~ 79 (240)
.+..|.||.+. ..++. .|...|+..|+..-+.. ...+...||.|...
T Consensus 4 ~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~~-----~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPLKT-----IPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCC--SSCEECSSSSCEECGGGSSSCCSS-----CCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCC--CcEEEcCCCCcCEECCcCCCCcCC-----CCCCceEChhccCh
Confidence 45678999874 22222 67788888888643331 12345788888643
No 166
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=24.27 E-value=39 Score=25.28 Aligned_cols=28 Identities=21% Similarity=0.555 Sum_probs=18.1
Q ss_pred CCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCC
Q 026330 38 YDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKAD 79 (240)
Q Consensus 38 ~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~ 79 (240)
..+.-..||+.|+. .......||.|+..
T Consensus 66 ~p~~C~~CG~~F~~--------------~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 66 KPAQCRKCGFVFKA--------------EINIPSRCPKCKSE 93 (105)
T ss_dssp CCCBBTTTCCBCCC--------------CSSCCSSCSSSCCC
T ss_pred ECcChhhCcCeecc--------------cCCCCCCCcCCCCC
Confidence 34455679999821 12244899999875
No 167
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.25 E-value=34 Score=23.11 Aligned_cols=39 Identities=23% Similarity=0.496 Sum_probs=26.8
Q ss_pred ccccccccccCCCcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026330 27 CFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 27 ~~~C~ICle~~~~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
...|..|.+.+.+.++..-+..|+..| ..|-.|+..+..
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C-----------------F~C~~C~~~L~~ 53 (81)
T 2dlo_A 15 LEKCATCSQPILDRILRAMGKAYHPGC-----------------FTCVVCHRGLDG 53 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTEEECTTT-----------------CBCSSSCCBCTT
T ss_pred CCccccCCCeecceeEEECCccccHHh-----------------cCcccCCCccCC
Confidence 356888888777665556666666555 678888877753
No 168
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.54 E-value=35 Score=23.31 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=16.0
Q ss_pred CccccccccccCCCcEEcCCCCcccHHHHHHH
Q 026330 26 GCFDCNICLDFAYDPVVTLCGHLYCWPCIYKW 57 (240)
Q Consensus 26 ~~~~C~ICle~~~~pv~t~CGH~FC~~CI~~w 57 (240)
+.|.|..|...+.......=|..||..|..+.
T Consensus 41 ~CF~C~~C~~~L~~~~~~~~g~~yC~~~y~~~ 72 (80)
T 2dj7_A 41 SCFKCQTCSVILTGEYISKDGVPYCESDYHAQ 72 (80)
T ss_dssp TTCBCSSSCCBCSSCCEEETTEEECTTHHHHH
T ss_pred ccCCcCcCCCCcCCCeEEECCEEECHHHHHHH
Confidence 34556666555543222334555666665443
No 169
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=22.36 E-value=15 Score=24.23 Aligned_cols=45 Identities=22% Similarity=0.572 Sum_probs=28.1
Q ss_pred CCccccccccccCCCcEEc---C--CC-CcccHHHHHHHHHhhccccCCCCCCCCCCccC
Q 026330 25 NGCFDCNICLDFAYDPVVT---L--CG-HLYCWPCIYKWLHVQSASLASDEHPQCPVCKA 78 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~t---~--CG-H~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~ 78 (240)
++...| ||.+.... ..+ . |. ..|+..|+. +.. ...+...||.|++
T Consensus 7 ~e~~yC-~C~~~~~g-~mi~CD~~~C~~~wfH~~Cvg--l~~-----~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSYG-EMIGCDNPDCPIEWFHFACVD--LTT-----KPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECCS-EEEECSCTTCSSCEEETGGGT--CSS-----CCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCCC-CeeEeeCCCCCCCCEecccCC--ccc-----CCCCCEECcCccC
Confidence 345667 89886443 344 3 55 589999986 331 1235688999864
No 170
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=22.27 E-value=49 Score=25.57 Aligned_cols=49 Identities=18% Similarity=0.325 Sum_probs=30.7
Q ss_pred CCccccccccccCC---Cc--EEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccC
Q 026330 25 NGCFDCNICLDFAY---DP--VVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKA 78 (240)
Q Consensus 25 ~~~~~C~ICle~~~---~p--v~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~ 78 (240)
.+...|.+|...+. .. +-..|.|.+|..|-..... ........|-+|+.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~-----~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSN-----NRPHPVWLCKICLE 106 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCC-----SSSSCCEEEHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCC-----CCCccceechhhHH
Confidence 46788999998873 22 2347999999988432100 11234577878864
No 171
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=22.21 E-value=12 Score=26.37 Aligned_cols=46 Identities=20% Similarity=0.403 Sum_probs=27.4
Q ss_pred ccccccccCCCcEEc---CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccC
Q 026330 29 DCNICLDFAYDPVVT---LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKA 78 (240)
Q Consensus 29 ~C~ICle~~~~pv~t---~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~ 78 (240)
.|.||...-.+..++ .|...|+..|+..-|... ..+....||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~----P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSV----PSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSC----CSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCC----CCCCceECcCccc
Confidence 456666554333333 688889999987554421 1222388999975
No 172
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=22.14 E-value=55 Score=24.41 Aligned_cols=14 Identities=21% Similarity=0.164 Sum_probs=9.7
Q ss_pred ccccccccccCCCc
Q 026330 27 CFDCNICLDFAYDP 40 (240)
Q Consensus 27 ~~~C~ICle~~~~p 40 (240)
...|.-|.+.+.+.
T Consensus 61 ~~~C~~C~~~I~~~ 74 (123)
T 2l4z_A 61 WKRCAGCGGKIADR 74 (123)
T ss_dssp CSBBSSSSSBCCSS
T ss_pred CCcCcCCCCCcCCc
Confidence 35688888777655
No 173
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=21.83 E-value=16 Score=24.40 Aligned_cols=45 Identities=22% Similarity=0.597 Sum_probs=28.2
Q ss_pred CCccccccccccCCCcEEc---C--CC-CcccHHHHHHHHHhhccccCCCCCCCCCCccC
Q 026330 25 NGCFDCNICLDFAYDPVVT---L--CG-HLYCWPCIYKWLHVQSASLASDEHPQCPVCKA 78 (240)
Q Consensus 25 ~~~~~C~ICle~~~~pv~t---~--CG-H~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~ 78 (240)
++...| ||.+... ...+ . |. ..|+..|+. +.. ...+...||.|+.
T Consensus 9 ~e~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg--l~~-----~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTY-----KPKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSS-----CCSSCCCCHHHHT
T ss_pred CCCcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCC--cCc-----CCCCCEECcCccc
Confidence 345667 9988643 3344 3 44 789999986 221 2235688999964
No 174
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.75 E-value=72 Score=21.02 Aligned_cols=41 Identities=22% Similarity=0.427 Sum_probs=26.7
Q ss_pred CccccccccccCC--CcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcC
Q 026330 26 GCFDCNICLDFAY--DPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHT 83 (240)
Q Consensus 26 ~~~~C~ICle~~~--~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~ 83 (240)
....|.-|.+.+. +.++..-|..|+..| ..|-.|+..+...
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~C-----------------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNSNGELYHEQC-----------------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEETTEEECTTT-----------------CCCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceEEEeCccEecccc-----------------CeECCCCCCCCCC
Confidence 3467888888774 445555666666555 6777787776543
No 175
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.71 E-value=63 Score=21.70 Aligned_cols=39 Identities=13% Similarity=0.319 Sum_probs=26.3
Q ss_pred cccccccccCC--CcEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCcC
Q 026330 28 FDCNICLDFAY--DPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHT 83 (240)
Q Consensus 28 ~~C~ICle~~~--~pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~~ 83 (240)
..|..|.+.+. +.++..-+..++..| ..|-.|+..+...
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C-----------------F~C~~C~~~L~~~ 56 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELFYEDRHFHEGC-----------------FRCCRCQRSLADE 56 (82)
T ss_dssp CBCTTTCCBCCSSCCBCCCSSCCCBTTT-----------------SBCTTTCCBCSSC
T ss_pred CcCccCCCccccCcEEEEeCCccccccC-----------------CeecCCCCccCCC
Confidence 46888888776 444444566666555 6788888877644
No 176
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=21.59 E-value=19 Score=26.68 Aligned_cols=48 Identities=19% Similarity=0.432 Sum_probs=29.8
Q ss_pred CccccccccccCCC--cEEc--CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccC
Q 026330 26 GCFDCNICLDFAYD--PVVT--LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKA 78 (240)
Q Consensus 26 ~~~~C~ICle~~~~--pv~t--~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~ 78 (240)
+...|.||.+.-.+ .++. .|...|+..|+..-+.. ...+...||.|+.
T Consensus 60 ~C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~-----~P~~~W~C~~C~~ 111 (112)
T 3v43_A 60 ECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTR-----MPKGMWICQICRP 111 (112)
T ss_dssp TTCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSS-----CCSSCCCCTTTSC
T ss_pred cCCccccccCcCCCccceEEcCCCCCeeecccCCCCCCC-----CCCCCeECCCCCC
Confidence 34467788764322 2222 68889999998654441 2234689999974
No 177
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=20.74 E-value=44 Score=22.45 Aligned_cols=30 Identities=20% Similarity=0.601 Sum_probs=20.1
Q ss_pred CCccccccccccCCCc--EE--c-CCCCcccHHHH
Q 026330 25 NGCFDCNICLDFAYDP--VV--T-LCGHLYCWPCI 54 (240)
Q Consensus 25 ~~~~~C~ICle~~~~p--v~--t-~CGH~FC~~CI 54 (240)
+....|.+|.....+- .+ - .|.-.|+..|+
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 4567899999876432 21 2 68889999998
No 178
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=20.55 E-value=19 Score=24.65 Aligned_cols=45 Identities=20% Similarity=0.398 Sum_probs=27.7
Q ss_pred ccccccccCCCcEEc---CCCCcccHHHHHHHHHhhccccCCCC-CCCCCCccC
Q 026330 29 DCNICLDFAYDPVVT---LCGHLYCWPCIYKWLHVQSASLASDE-HPQCPVCKA 78 (240)
Q Consensus 29 ~C~ICle~~~~pv~t---~CGH~FC~~CI~~wl~~~s~~~~~~~-~~~CPvCr~ 78 (240)
.|.||...-....++ .|...|+..|+..-|.. ...+ ...||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~-----~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSS-----VPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSS-----CCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCC-----CCCCCCcCCcCccC
Confidence 456777543333333 68889999998643331 1123 689999975
No 179
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.54 E-value=72 Score=21.62 Aligned_cols=53 Identities=17% Similarity=0.284 Sum_probs=30.2
Q ss_pred CccccccccccCCCcEEc---CCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCC
Q 026330 26 GCFDCNICLDFAYDPVVT---LCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKAD 79 (240)
Q Consensus 26 ~~~~C~ICle~~~~pv~t---~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~ 79 (240)
+...| ||.....+-..+ .|...|+..|+.--...............||.|+..
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 45667 898876543233 688999999984211110000001245899999753
No 180
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=20.08 E-value=61 Score=21.45 Aligned_cols=38 Identities=21% Similarity=0.450 Sum_probs=26.2
Q ss_pred cccccccccCCC-----cEEcCCCCcccHHHHHHHHHhhccccCCCCCCCCCCccCCCCc
Q 026330 28 FDCNICLDFAYD-----PVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISH 82 (240)
Q Consensus 28 ~~C~ICle~~~~-----pv~t~CGH~FC~~CI~~wl~~~s~~~~~~~~~~CPvCr~~v~~ 82 (240)
..|.-|.+.+.. .++..-+..|+..| ..|-.|+..+..
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~C-----------------F~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYC-----------------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEETTEEEETTT-----------------CBCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCceeEEECcceeCccc-----------------CEehhcCCCCCC
Confidence 568888888774 45555566666555 678888877753
No 181
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.03 E-value=17 Score=25.48 Aligned_cols=45 Identities=24% Similarity=0.460 Sum_probs=28.1
Q ss_pred ccccccccCCCc-EEc--CCCCcccHHHHHHHHHhhccccCCCC-CCCCCCccC
Q 026330 29 DCNICLDFAYDP-VVT--LCGHLYCWPCIYKWLHVQSASLASDE-HPQCPVCKA 78 (240)
Q Consensus 29 ~C~ICle~~~~p-v~t--~CGH~FC~~CI~~wl~~~s~~~~~~~-~~~CPvCr~ 78 (240)
.|.||...-... +++ .|...|+..|+..-|.. ...+ ...||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~-----~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDK-----VPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSS-----CCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccC-----CCCCCCcCCcCccC
Confidence 677888643333 332 68889999998643331 1123 688999964
Done!