BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026331
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And
Group-1 Pollen Allergen From Maize
Length = 245
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 101/231 (43%), Gaps = 26/231 (11%)
Query: 22 GGWINAHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGACFQI 79
G W+ A AT+Y G N+ Y TA + +F +G CG+C+++
Sbjct: 17 GKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEV 76
Query: 80 MCANDPQWCLRGSIIV--TATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAG 130
C P+ C + V T N+ P +HFDLS F +A+ G
Sbjct: 77 RCKEKPE-CSGNPVTVYITDMNYEPIA------PYHFDLSGKAFGSLAKPGLNDKIRHCG 129
Query: 131 IVPVIYRRVRCKRNGGIRFTINGHSYFN----LVLITNVGGAGDVRAVSIKGSRT-RWQP 185
I+ V +RRVRCK G + + N VL+ V GD+ + I+ + W+P
Sbjct: 130 IMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKP 189
Query: 186 MSRNWGQNWQSNS--YLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYT 234
M +WG W+ ++ L G S +T+ +G V++ +V P NW YT
Sbjct: 190 MKLSWGAIWRMDTAKALKG-PFSIRLTSESGKKVIAKDVIPANWRPDAVYT 239
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
Length = 241
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 99/231 (42%), Gaps = 26/231 (11%)
Query: 24 WINAHATFYXXXXXXXXXXXXXX--YGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMC 81
W++A +T+Y Y ++ + T +T +F +G CG+CF+I C
Sbjct: 19 WLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKC 78
Query: 82 ANDPQWCLRGSIIV--TATNFCPPGGWCDPPNHHFDLSQPVFQHIAQY-------RAGIV 132
P+ C ++V T N P +HFDLS F +A+ AG +
Sbjct: 79 TK-PEACSGEPVVVHITDDNEEPIA------PYHFDLSGHAFGAMAKKGDEQKLRSAGEL 131
Query: 133 PVIYRRVRCKRNGGIRFTINGHSYFN----LVLITNVGGAGDVRAVSIKGS-RTRWQPMS 187
+ +RRV+CK G + T + N +L+ V G GDV AV IK + +W +
Sbjct: 132 ELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELK 191
Query: 188 RNWGQNWQSNS--YLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGR 236
+WG W+ ++ L G + TT G + +V P W +Y +
Sbjct: 192 ESWGAIWRIDTPDKLTG-PFTVRYTTEGGTKTEAEDVIPEGWKADTSYESK 241
>pdb|4G8T|A Chain A, Crystal Structure Of A Glucarate Dehydratase Related
Protein, From Actinobacillus Succinogenes, Target
Efi-502312, With Sodium And Sulfate Bound, Ordered Loop
pdb|4G8T|B Chain B, Crystal Structure Of A Glucarate Dehydratase Related
Protein, From Actinobacillus Succinogenes, Target
Efi-502312, With Sodium And Sulfate Bound, Ordered Loop
pdb|4G8T|C Chain C, Crystal Structure Of A Glucarate Dehydratase Related
Protein, From Actinobacillus Succinogenes, Target
Efi-502312, With Sodium And Sulfate Bound, Ordered Loop
pdb|4G8T|D Chain D, Crystal Structure Of A Glucarate Dehydratase Related
Protein, From Actinobacillus Succinogenes, Target
Efi-502312, With Sodium And Sulfate Bound, Ordered Loop
Length = 464
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 84 DPQ-WCLRGSIIVTATNFCPPGG--WCDPPNHHFDLSQPVFQHIAQYRAGIVPVI 135
DP W ++GSI V C G W N+HFD+S +F H+A G + I
Sbjct: 331 DPHFWTMQGSIRVA--QMCHEWGLTWGSHSNNHFDISLAMFTHVAAAAPGDITAI 383
>pdb|3PWI|A Chain A, Crystal Structure Of The Mutant P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D-Glucarate
pdb|3PWI|B Chain B, Crystal Structure Of The Mutant P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D-Glucarate
Length = 446
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 84 DPQ-WCLRGSIIVTATNFCPPGG--WCDPPNHHFDLSQPVFQHIAQYRAGIVPVI 135
DP W ++GS+ V C G W N+HFD+S +F H+A G + I
Sbjct: 313 DPHFWTMQGSVRVA--QMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAI 365
>pdb|3PWG|A Chain A, Crystal Structure Of The Mutant S29g.P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D- Glucarate
pdb|3PWG|B Chain B, Crystal Structure Of The Mutant S29g.P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D- Glucarate
pdb|3PWG|C Chain C, Crystal Structure Of The Mutant S29g.P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D- Glucarate
pdb|3PWG|D Chain D, Crystal Structure Of The Mutant S29g.P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D- Glucarate
Length = 446
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 84 DPQ-WCLRGSIIVTATNFCPPGG--WCDPPNHHFDLSQPVFQHIAQYRAGIVPVI 135
DP W ++GS+ V C G W N+HFD+S +F H+A G + I
Sbjct: 313 DPHFWTMQGSVRVA--QMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAI 365
>pdb|1EC7|A Chain A, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC7|B Chain B, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC7|C Chain C, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC7|D Chain D, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC8|A Chain A, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC8|B Chain B, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC8|C Chain C, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC8|D Chain D, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC9|A Chain A, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1EC9|B Chain B, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1EC9|C Chain C, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1EC9|D Chain D, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1ECQ|A Chain A, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|1ECQ|B Chain B, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|1ECQ|C Chain C, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|1ECQ|D Chain D, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|4GYP|A Chain A, Crystal Structure Of The Heterotetrameric Complex Of Glucd
And Glucdrp From E. Coli K-12 Mg1655 (Efi Target
Efi-506058)
pdb|4GYP|B Chain B, Crystal Structure Of The Heterotetrameric Complex Of Glucd
And Glucdrp From E. Coli K-12 Mg1655 (Efi Target
Efi-506058)
Length = 446
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 84 DPQ-WCLRGSIIVTATNFCPPGG--WCDPPNHHFDLSQPVFQHIAQYRAGIVPVI 135
DP W ++GS+ V C G W N+HFD+S +F H+A G + I
Sbjct: 313 DPHFWTMQGSVRVA--QMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAI 365
>pdb|1BQG|A Chain A, The Structure Of The D-Glucarate Dehydratase Protein From
Pseudomonas Putida
Length = 451
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 84 DPQ-WCLRGSIIVTATNFCPPGG--WCDPPNHHFDLSQPVFQHIAQYRAGIVPVI 135
DP W ++GS+ V C G W N+HFD+S +F H+A G + I
Sbjct: 319 DPHFWTMQGSVRVA--QMCNEWGLTWGSHSNNHFDISLAMFTHVAAAAPGNITAI 371
>pdb|1JDF|A Chain A, Glucarate Dehydratase From E.Coli N341d Mutant
pdb|1JDF|B Chain B, Glucarate Dehydratase From E.Coli N341d Mutant
pdb|1JDF|C Chain C, Glucarate Dehydratase From E.Coli N341d Mutant
pdb|1JDF|D Chain D, Glucarate Dehydratase From E.Coli N341d Mutant
Length = 446
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 84 DPQ-WCLRGSIIVTATNFCPPGG--WCDPPNHHFDLSQPVFQHIAQYRAGIVPVI 135
DP W ++GS+ V C G W ++HFD+S +F H+A G + I
Sbjct: 313 DPHFWTMQGSVRVA--QMCHEFGLTWGSHSDNHFDISLAMFTHVAAAAPGKITAI 365
>pdb|3P0W|A Chain A, Crystal Structure Of D-Glucarate Dehydratase From
Ralstonia Solanacearum Complexed With Mg And D-Glucarate
pdb|3P0W|B Chain B, Crystal Structure Of D-Glucarate Dehydratase From
Ralstonia Solanacearum Complexed With Mg And D-Glucarate
pdb|3P0W|C Chain C, Crystal Structure Of D-Glucarate Dehydratase From
Ralstonia Solanacearum Complexed With Mg And D-Glucarate
pdb|3P0W|D Chain D, Crystal Structure Of D-Glucarate Dehydratase From
Ralstonia Solanacearum Complexed With Mg And D-Glucarate
Length = 470
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 84 DPQ-WCLRGSIIVTATNFCPPGG--WCDPPNHHFDLSQPVFQHIAQYRAGIVPVI 135
DP W ++GS+ V C G W N+HFD+S +F H+A G + I
Sbjct: 329 DPHFWTMQGSVRVA--QLCDEWGLTWGSHSNNHFDVSLAMFTHVAAAAPGNITAI 381
>pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major
Length = 751
Score = 28.9 bits (63), Expect = 2.4, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 123 HIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNVGGAGDVR-AVSIKGSRT 181
H+ R G VR R G+R+ + H +LV++TN GGA + + ++ +G +
Sbjct: 298 HLLDLRKGNAHNTLEIVR-PREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPS 356
Query: 182 RW 183
W
Sbjct: 357 DW 358
>pdb|1JCT|A Chain A, Glucarate Dehydratase, N341l Mutant Orthorhombic Form
pdb|1JCT|B Chain B, Glucarate Dehydratase, N341l Mutant Orthorhombic Form
Length = 446
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 84 DPQ-WCLRGSIIVTATNFCPPGG--WCDPPNHHFDLSQPVFQHIAQYRAGIVPVI 135
DP W ++GS+ V C G W +HFD+S +F H+A G + I
Sbjct: 313 DPHFWTMQGSVRVA--QMCHEFGLTWGSHSLNHFDISLAMFTHVAAAAPGKITAI 365
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.467
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,618,711
Number of Sequences: 62578
Number of extensions: 298782
Number of successful extensions: 639
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 622
Number of HSP's gapped (non-prelim): 20
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.9 bits)