Query 026331
Match_columns 240
No_of_seqs 156 out of 1073
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 06:38:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026331.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026331hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00050 expansin A; Provision 100.0 2.1E-67 4.6E-72 457.7 25.9 238 1-238 1-247 (247)
2 PLN00193 expansin-A; Provision 100.0 4E-66 8.6E-71 451.4 27.9 217 22-238 28-256 (256)
3 PLN03023 Expansin-like B1; Pro 100.0 1.2E-61 2.7E-66 421.2 25.3 223 8-239 9-247 (247)
4 COG4305 Endoglucanase C-termin 100.0 1.6E-27 3.6E-32 194.7 20.9 195 22-239 28-231 (232)
5 PLN03024 Putative EG45-like do 100.0 4.2E-28 9.1E-33 191.7 12.6 110 11-138 12-125 (125)
6 smart00837 DPBB_1 Rare lipopro 99.9 2.4E-24 5.1E-29 160.5 7.2 78 59-136 1-87 (87)
7 PLN00115 pollen allergen group 99.9 2.1E-23 4.5E-28 163.0 11.0 87 146-238 25-118 (118)
8 PF01357 Pollen_allerg_1: Poll 99.9 1.4E-21 3E-26 144.2 9.7 77 147-224 1-82 (82)
9 PF03330 DPBB_1: Rare lipoprot 99.8 4.5E-19 9.7E-24 129.4 6.5 73 59-136 1-78 (78)
10 PF00967 Barwin: Barwin family 99.1 3.1E-11 6.7E-16 92.8 3.7 60 69-141 56-119 (119)
11 PF07249 Cerato-platanin: Cera 98.3 2.2E-06 4.8E-11 67.3 7.9 66 58-140 44-113 (119)
12 TIGR00413 rlpA rare lipoprotei 97.9 0.00014 3E-09 62.2 10.3 94 27-143 1-95 (208)
13 COG0797 RlpA Lipoproteins [Cel 97.5 0.00029 6.4E-09 61.1 7.0 60 73-142 119-178 (233)
14 PRK10672 rare lipoprotein A; P 97.1 0.004 8.7E-08 57.5 10.2 58 72-139 114-171 (361)
15 PF02015 Glyco_hydro_45: Glyco 90.1 0.29 6.3E-06 41.8 3.1 53 59-118 70-122 (201)
16 PF03404 Mo-co_dimer: Mo-co ox 80.0 3.5 7.6E-05 32.8 4.6 48 168-215 39-105 (131)
17 cd02110 SO_family_Moco_dimer S 78.2 4.7 0.0001 36.8 5.5 48 168-215 235-292 (317)
18 PF08194 DIM: DIM protein; In 77.7 1.9 4E-05 26.8 1.8 20 1-20 1-21 (36)
19 cd02854 Glycogen_branching_enz 74.5 8.1 0.00017 29.1 5.0 48 171-218 16-76 (99)
20 PF07172 GRP: Glycine rich pro 65.0 4.7 0.0001 30.4 1.9 18 3-20 8-25 (95)
21 cd02114 bact_SorA_Moco sulfite 59.2 24 0.00052 33.0 5.9 48 168-215 287-344 (367)
22 PLN00177 sulfite oxidase; Prov 58.3 25 0.00055 33.2 5.9 50 166-215 293-361 (393)
23 PRK10564 maltose regulon perip 56.1 23 0.00051 32.2 5.1 37 204-240 90-129 (303)
24 cd02113 bact_SoxC_Moco bacteri 51.3 35 0.00076 31.4 5.5 49 167-215 236-293 (326)
25 PF15240 Pro-rich: Proline-ric 50.8 10 0.00022 32.0 1.7 23 3-25 2-24 (179)
26 PF10417 1-cysPrx_C: C-termina 50.1 9.5 0.00021 24.0 1.2 11 221-231 10-20 (40)
27 cd02111 eukary_SO_Moco molybdo 44.1 61 0.0013 30.3 6.0 50 166-215 273-338 (365)
28 PF15052 TMEM169: TMEM169 prot 43.9 10 0.00022 30.1 0.7 30 2-34 17-46 (133)
29 PF03487 IL13: Interleukin-13; 43.0 8 0.00017 24.5 0.0 19 1-19 1-19 (43)
30 cd02855 Glycogen_branching_enz 42.4 81 0.0018 22.9 5.5 34 184-217 49-85 (106)
31 cd02112 eukary_NR_Moco molybdo 41.0 81 0.0017 29.7 6.3 46 170-215 301-363 (386)
32 PF07148 MalM: Maltose operon 31.5 41 0.0009 26.9 2.4 46 192-239 7-55 (135)
33 TIGR02588 conserved hypothetic 30.7 2.6E+02 0.0056 22.1 6.7 34 145-179 34-73 (122)
34 PLN02252 nitrate reductase [NA 30.0 1.3E+02 0.0028 31.6 6.3 53 163-215 366-435 (888)
35 PF08770 SoxZ: Sulphur oxidati 29.7 1E+02 0.0022 23.3 4.2 26 194-220 72-97 (100)
36 PF03100 CcmE: CcmE; InterPro 28.4 89 0.0019 24.6 3.9 30 203-232 71-101 (131)
37 cd02861 E_set_proteins_like E 27.6 1.1E+02 0.0025 21.5 4.0 44 172-217 14-60 (82)
38 PRK13159 cytochrome c-type bio 26.4 90 0.0019 25.7 3.6 28 204-231 73-101 (155)
39 PF12863 DUF3821: Domain of un 24.6 4.4E+02 0.0096 22.7 7.7 94 112-219 48-146 (209)
40 COG2372 CopC Uncharacterized p 24.1 84 0.0018 25.0 2.9 28 126-153 96-126 (127)
41 cd02859 AMPKbeta_GBD_like AMP- 23.7 2.6E+02 0.0056 19.7 5.2 49 170-221 11-63 (79)
42 PRK13254 cytochrome c-type bio 23.6 1.3E+02 0.0027 24.6 3.9 29 204-232 72-101 (148)
43 PF02922 CBM_48: Carbohydrate- 23.5 1.6E+02 0.0034 20.5 4.1 49 171-219 22-80 (85)
44 PRK10301 hypothetical protein; 22.6 96 0.0021 24.3 3.0 27 126-152 95-124 (124)
45 cd02860 Pullulanase_N_term Pul 22.3 2.3E+02 0.005 20.6 5.0 32 185-216 40-73 (100)
46 PRK13701 psiB plasmid SOS inhi 21.2 2.9E+02 0.0063 22.4 5.4 44 130-177 58-105 (144)
47 PRK13150 cytochrome c-type bio 20.6 1.3E+02 0.0028 24.9 3.4 29 204-232 79-108 (159)
48 PRK03577 acid shock protein pr 20.1 90 0.002 23.7 2.2 20 1-20 1-21 (102)
No 1
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=2.1e-67 Score=457.65 Aligned_cols=238 Identities=78% Similarity=1.357 Sum_probs=213.8
Q ss_pred ChhHHHHHHHHHHhhhhhc-cCCCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhhcCCCCCCCceEEE
Q 026331 1 MALWVILCVGFLSLVSSVQ-GYGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFQI 79 (240)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~~-~~~~~~~g~aT~Y~~~~~~~~~~GaCg~~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~v 79 (240)
|.-|+--++.||...-... .+.+|..++|||||.+++.++.+|||||+++..++++.++||+|+.+|++|++||+||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV 80 (247)
T PLN00050 1 MECLGYTIVALLSILKIVEGYGSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEI 80 (247)
T ss_pred CcchhhhHHHHhhhheeccccCCCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEE
Confidence 3344444445454333332 236899999999999888888999999999887889999999999999999999999999
Q ss_pred EEcCCCCcccCCeEEEEEeCCCCC--------CCCCCCCCCceeeCHHHHHhhchhcCCccceEEEEeeeeeCCceeEEE
Q 026331 80 MCANDPQWCLRGSIIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTI 151 (240)
Q Consensus 80 ~~~~~~~~C~~g~v~v~V~D~Cp~--------~~~C~~~~~~lDLs~~aF~~la~~~~G~~~i~w~~V~C~~~g~i~~~~ 151 (240)
+|.+++..|.+++|+|+|||+||+ ++||.+++.|||||..||.+||..+.|+++|+||||||+++|+|+|++
T Consensus 81 ~C~~~~~~C~~gsV~V~itd~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~~~aGii~V~yRRVpC~~~G~i~f~v 160 (247)
T PLN00050 81 KCVNDNIWCLPGSIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTI 160 (247)
T ss_pred EcCCCCcccCCCcEEEEEecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhhhcCCeeeeEEEEecCcCCCCeEEEE
Confidence 997766679888999999999996 468998899999999999999999999999999999999999999999
Q ss_pred cCccceEEEEEEeecCCcCeEEEEEEcCCCceeEcCCCCCceEEECCCCCCcceEEEEEecCCeEEEEccccCCCCCCCc
Q 026331 152 NGHSYFNLVLITNVGGAGDVRAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQ 231 (240)
Q Consensus 152 ~~s~~w~av~v~n~~g~~~I~sVev~~~g~~W~~m~r~~gn~W~~~~~~~g~p~~vRvT~~~G~~vv~~~vip~~w~~g~ 231 (240)
++++||++|+|.|++|+++|++|||+++++.|++|+|+||++|++++++.+.||+||||+.+|+++++.||||++|++|+
T Consensus 161 ~g~sy~~~vlv~nv~G~gdi~~V~ikg~~~~W~~M~R~wGa~W~~~~~l~g~~lsfRvt~~~G~~~~~~~V~Pa~W~~G~ 240 (247)
T PLN00050 161 NGHSYFNLVLITNVGGAGDIVAVSIKGSKSNWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQ 240 (247)
T ss_pred cCCceeEEEEEEEcCCCccEEEEEEecCCCCeeECccccCceeEccCCCCCCcEEEEEEecCCcEEEECceeCCCCCCCC
Confidence 99899999999999999999999999877789999999999999988777779999999999999999999999999999
Q ss_pred EEecCCc
Q 026331 232 TYTGRQF 238 (240)
Q Consensus 232 ~y~~~qf 238 (240)
+|++.||
T Consensus 241 ty~~~~f 247 (247)
T PLN00050 241 TYTGMQF 247 (247)
T ss_pred eEecCcC
Confidence 9999987
No 2
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=4e-66 Score=451.39 Aligned_cols=217 Identities=68% Similarity=1.346 Sum_probs=204.1
Q ss_pred CCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhhcCCCCCCCceEEEEEcC--CCCcccCC-eEEEEEe
Q 026331 22 GGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCAN--DPQWCLRG-SIIVTAT 98 (240)
Q Consensus 22 ~~~~~g~aT~Y~~~~~~~~~~GaCg~~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~v~~~~--~~~~C~~g-~v~v~V~ 98 (240)
++|..++|||||++++.++.+|||||+++..++++.++||+|+.+|++|++||+||||+|.. ++..|.++ +|+|+||
T Consensus 28 ~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g~sV~Vt~t 107 (256)
T PLN00193 28 SGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGASVTITAT 107 (256)
T ss_pred CCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCCCeEEEEEe
Confidence 58999999999998888889999999988878899999999999999999999999999952 46679776 9999999
Q ss_pred CCCCC--------CCCCCCCCCceeeCHHHHHhhchhcCCccceEEEEeeeeeCCceeEEEcCccceEEEEEEeecCCcC
Q 026331 99 NFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNVGGAGD 170 (240)
Q Consensus 99 D~Cp~--------~~~C~~~~~~lDLs~~aF~~la~~~~G~~~i~w~~V~C~~~g~i~~~~~~s~~w~av~v~n~~g~~~ 170 (240)
|+||. ++||.+++.|||||+.||.+||....|+++|+||+|||+++|+|+|++++++||++|+|.|++|+++
T Consensus 108 d~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~~~Giv~V~yrRVpC~~~G~i~f~v~gn~y~~~vlv~nv~G~gd 187 (256)
T PLN00193 108 NFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTINGRDYFELVLISNVGGAGS 187 (256)
T ss_pred cCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhhcCCeEeEEEEEeccccCCCcEEEEcCCccEEEEEEEEeCCCcc
Confidence 99996 4689988899999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEcCCCceeEcCCCCCceEEECCCCCCcceEEEEEecCCeEEEEccccCCCCCCCcEEecC-Cc
Q 026331 171 VRAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGR-QF 238 (240)
Q Consensus 171 I~sVev~~~g~~W~~m~r~~gn~W~~~~~~~g~p~~vRvT~~~G~~vv~~~vip~~w~~g~~y~~~-qf 238 (240)
|++|||+++++.|++|+|+||++|+++.++.+.||+||||+.+|+++++.||||++|++|++|++. ||
T Consensus 188 V~~v~Ik~~~~~W~~M~R~wGa~W~~~~~l~g~plsfRvts~~G~~~~~~~viPa~W~~G~ty~s~vqf 256 (256)
T PLN00193 188 IQSVSIKGSKTGWMAMSRNWGANWQSNAYLDGQSLSFKVTTTDGQTRFFLNVVPANWGFGQTFSSSVQF 256 (256)
T ss_pred EEEEEEecCCCCeeECcccccceeEecCCCCCCCEEEEEEEcCCeEEEECceeCCCCCCCCeEecCccC
Confidence 999999988778999999999999999877777999999999999999999999999999999999 98
No 3
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=1.2e-61 Score=421.18 Aligned_cols=223 Identities=28% Similarity=0.587 Sum_probs=195.3
Q ss_pred HHHHHHhhhhhccCCCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhhcCCCCCCCceEEEEEcCCCCc
Q 026331 8 CVGFLSLVSSVQGYGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQW 87 (240)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~g~aT~Y~~~~~~~~~~GaCg~~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~v~~~~~~~~ 87 (240)
++.++.+.+++.+.++|.+++|||||++++.++.+|||||+++..+.++.++||++ ++|++|++||+||||+|.+ +..
T Consensus 9 ~~~~~~~~~~~~~~~~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~-~~~ 86 (247)
T PLN03023 9 FLCVIVLLPLLCKSQDFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKA-PNL 86 (247)
T ss_pred HHHHHHHhhhhhhcCCcccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeeh-hhhcCCchhcccEEeecCC-CCc
Confidence 33334444456666789999999999999888999999999987777888999999 9999999999999999964 678
Q ss_pred ccCCeEEEEEeCCCCCCCCCCCCCCceeeCHHHHHhhch-------hcCCccceEEEEeeeeeCC-ceeEEEcC--c-cc
Q 026331 88 CLRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNG-GIRFTING--H-SY 156 (240)
Q Consensus 88 C~~g~v~v~V~D~Cp~~~~C~~~~~~lDLs~~aF~~la~-------~~~G~~~i~w~~V~C~~~g-~i~~~~~~--s-~~ 156 (240)
|.+++|+|+|||.||. + +.|||||..||.+||. ...|+++|+||||||.++| +|+|++++ + ++
T Consensus 87 C~~~~v~V~iTd~~~~---~---~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~p~ 160 (247)
T PLN03023 87 CSDDGVNVVVTDYGEG---D---KTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPD 160 (247)
T ss_pred cCCCCeEEEEEeCCCC---C---CCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEEEecCCCCCc
Confidence 9988999999999984 3 5899999999999998 4679999999999999999 99999964 3 77
Q ss_pred eEEEEEEeecCCcCeEEEEEEcCC-CceeEcCCCCCceEEECCCCCCcceEEEE--EecCCeE-EEEccccCCCCCCCcE
Q 026331 157 FNLVLITNVGGAGDVRAVSIKGSR-TRWQPMSRNWGQNWQSNSYLNGQSLSFVV--TTSNGHS-VVSYNVAPPNWSFGQT 232 (240)
Q Consensus 157 w~av~v~n~~g~~~I~sVev~~~g-~~W~~m~r~~gn~W~~~~~~~g~p~~vRv--T~~~G~~-vv~~~vip~~w~~g~~ 232 (240)
|++|+|.|++|+++|++|||++++ ..|++|+|+||++|+++.+++| ||+||+ |..+|++ ++++||||++|++|++
T Consensus 161 yl~vlv~~vgG~GdI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~~l~G-p~slrf~v~~~~g~~~vva~nViPa~Wk~G~T 239 (247)
T PLN03023 161 YLAIVMLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMPNPPKG-PITLRFQVSGSAGQTWVQAKNVIPSDWKAGVA 239 (247)
T ss_pred eEEEEEEEcCCCccEEEEEEEecCCCCceECccCCcceeEcCCCCCC-ceeEEEEEEeCCCcEEEEECceeCCCCCCCCE
Confidence 999999999999999999999865 5899999999999999988888 555555 4557754 8999999999999999
Q ss_pred EecC-Ccc
Q 026331 233 YTGR-QFR 239 (240)
Q Consensus 233 y~~~-qf~ 239 (240)
|+++ ||.
T Consensus 240 Y~s~vq~~ 247 (247)
T PLN03023 240 YDSNIQLD 247 (247)
T ss_pred EecccccC
Confidence 9999 985
No 4
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.6e-27 Score=194.69 Aligned_cols=195 Identities=23% Similarity=0.344 Sum_probs=156.5
Q ss_pred CCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhhcCCC----CCCCceEEEEEcCCCCcccCCeEEEEE
Q 026331 22 GGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNG----LSCGACFQIMCANDPQWCLRGSIIVTA 97 (240)
Q Consensus 22 ~~~~~g~aT~Y~~~~~~~~~~GaCg~~~~~~~~~~~~~aA~s~~~~~~g----~~CG~C~~v~~~~~~~~C~~g~v~v~V 97 (240)
++.++|.|||-+.. .++||=.+ ++.+.++.+.|+|+.+-+-| ++-|+.+||.+. +|+.+|.|
T Consensus 28 d~~f~G~ATyTgsG----YsGGAflL---DPI~sd~eITAlNPaqlNlGGipAAmAGaYLrVqGP-------KG~TTVYV 93 (232)
T COG4305 28 DDLFEGYATYTGSG----YSGGAFLL---DPIPSDMEITALNPAQLNLGGIPAAMAGAYLRVQGP-------KGKTTVYV 93 (232)
T ss_pred ccccceeEEEeccc----ccCceEEe---cCcCCcceeeecCHHHcccCCchhhhccceEEEECC-------CCceEEEE
Confidence 45578999997653 24677654 33445678999999887754 679999999984 67889999
Q ss_pred eCCCCCCCCCCCCCCceeeCHHHHHhhchhcCCccceEEEEeeeeeCCceeEEEc--CccceEEEEEEeecCCcCeEEEE
Q 026331 98 TNFCPPGGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTIN--GHSYFNLVLITNVGGAGDVRAVS 175 (240)
Q Consensus 98 ~D~Cp~~~~C~~~~~~lDLs~~aF~~la~~~~G~~~i~w~~V~C~~~g~i~~~~~--~s~~w~av~v~n~~g~~~I~sVe 175 (240)
+|..|++ ..+.||||+.||.+|.+..+|+++|+||.|+-|..||+.+++| ++.||.++||+|+. .||.++|
T Consensus 94 TDlYPeg-----asGaLDLSpNAFakIGnm~qGrIpvqWrvv~aPvtGN~~YRiKeGSs~WWAAIQVRnH~--yPV~KlE 166 (232)
T COG4305 94 TDLYPEG-----ASGALDLSPNAFAKIGNMKQGRIPVQWRVVKAPVTGNFTYRIKEGSSRWWAAIQVRNHK--YPVMKLE 166 (232)
T ss_pred ecccccc-----cccccccChHHHhhhcchhcCccceeEEEecccccccEEEEEecCCccceeeeeeeccc--CceEEEE
Confidence 9999982 2589999999999999999999999999999999999999997 47899999999986 6999999
Q ss_pred EEcCCCceeEcCCCCCceEEECCCCCCcceEEEEEecCCeEEEEc-cccCCCCCCC-cEEecC-Ccc
Q 026331 176 IKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSY-NVAPPNWSFG-QTYTGR-QFR 239 (240)
Q Consensus 176 v~~~g~~W~~m~r~~gn~W~~~~~~~g~p~~vRvT~~~G~~vv~~-~vip~~w~~g-~~y~~~-qf~ 239 (240)
+..+ +.|..|.+..||+|.-.. +...|+.+|+||+.|+.++.. -.+|..-+-. .+..+. ||+
T Consensus 167 ~~qd-g~WinlpK~dYNhFVgT~-LG~~pL~~RmTDIRG~~l~DtlP~Lpk~asSKaY~V~G~VQFs 231 (232)
T COG4305 167 YEQD-GKWINLPKMDYNHFVGTN-LGTGPLKVRMTDIRGKVLKDTLPKLPKSASSKAYTVPGHVQFS 231 (232)
T ss_pred EecC-CeEeeccccccceeeccc-cCCCceEEEEeecccceeecccccccccccCCceeecceeecC
Confidence 9965 799999999999998654 333399999999999988865 3455433321 223444 775
No 5
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.95 E-value=4.2e-28 Score=191.71 Aligned_cols=110 Identities=35% Similarity=0.595 Sum_probs=91.8
Q ss_pred HHHhhhhhccCCCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhhcCCCCCCCceEEEEEcCC----CC
Q 026331 11 FLSLVSSVQGYGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCAND----PQ 86 (240)
Q Consensus 11 ~~~l~~~~~~~~~~~~g~aT~Y~~~~~~~~~~GaCg~~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~v~~~~~----~~ 86 (240)
++.|.++.++ .+|+||||++.+ .|||+ ++ .+++.++||+++.+|++|++||+||||+|.+. +.
T Consensus 12 ~~~~~~~~~~----~~G~AT~Y~~~~-----~gAC~-~~---~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~ 78 (125)
T PLN03024 12 LVFLFSVSYA----TPGIATFYTSYT-----PSACY-RG---TSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPH 78 (125)
T ss_pred HHHHhhhhcc----cceEEEEeCCCC-----Ccccc-CC---CCCCCEeEEeCHHHcCCCcccCceEEEEECCCCccccc
Confidence 3446666667 889999998643 58994 43 23678999999999999999999999999642 24
Q ss_pred cccCCeEEEEEeCCCCCCCCCCCCCCceeeCHHHHHhhchhcCCccceEEEE
Q 026331 87 WCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRR 138 (240)
Q Consensus 87 ~C~~g~v~v~V~D~Cp~~~~C~~~~~~lDLs~~aF~~la~~~~G~~~i~w~~ 138 (240)
.|.+++|+|+|+|+||++ |. .|||||++||.+||+++.|+++|+|.+
T Consensus 79 ~c~gksV~V~VtD~CP~~--C~---~~~DLS~~AF~~iA~~~aG~v~V~y~~ 125 (125)
T PLN03024 79 PCTGKSVTVKIVDHCPSG--CA---STLDLSREAFAQIANPVAGIINIDYIP 125 (125)
T ss_pred cccCCeEEEEEEcCCCCC--CC---CceEcCHHHHHHhcCccCCEEEEEEeC
Confidence 688889999999999942 75 699999999999999999999999974
No 6
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.90 E-value=2.4e-24 Score=160.53 Aligned_cols=78 Identities=77% Similarity=1.501 Sum_probs=71.2
Q ss_pred EEEechhhcCCCCCCCceEEEEEcCCCCcccCC-eEEEEEeCCCCC--------CCCCCCCCCceeeCHHHHHhhchhcC
Q 026331 59 TAALSTALFNNGLSCGACFQIMCANDPQWCLRG-SIIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRA 129 (240)
Q Consensus 59 ~aA~s~~~~~~g~~CG~C~~v~~~~~~~~C~~g-~v~v~V~D~Cp~--------~~~C~~~~~~lDLs~~aF~~la~~~~ 129 (240)
+||+|+.+|++|++||+||||+|.+++..|.++ +|+|+|||+||+ ++||.+++.|||||+.||.+||..+.
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~~~~ 80 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQYKA 80 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhhhcC
Confidence 479999999999999999999997667779775 999999999997 26898888999999999999999999
Q ss_pred CccceEE
Q 026331 130 GIVPVIY 136 (240)
Q Consensus 130 G~~~i~w 136 (240)
|+++|+|
T Consensus 81 Gvi~v~y 87 (87)
T smart00837 81 GIVPVKY 87 (87)
T ss_pred CEEeeEC
Confidence 9999987
No 7
>PLN00115 pollen allergen group 3; Provisional
Probab=99.90 E-value=2.1e-23 Score=163.04 Aligned_cols=87 Identities=22% Similarity=0.340 Sum_probs=78.0
Q ss_pred ceeEEEc--CccceEEEEEEeecCCcCeEEEEEEcCC-Ccee-EcCCCCCceEEECC--CCCCcceEEEEEecCCeEEEE
Q 026331 146 GIRFTIN--GHSYFNLVLITNVGGAGDVRAVSIKGSR-TRWQ-PMSRNWGQNWQSNS--YLNGQSLSFVVTTSNGHSVVS 219 (240)
Q Consensus 146 ~i~~~~~--~s~~w~av~v~n~~g~~~I~sVev~~~g-~~W~-~m~r~~gn~W~~~~--~~~g~p~~vRvT~~~G~~vv~ 219 (240)
+|+|+++ ++++|+++++ | ++|.+|||+++| ..|+ +|+|+||+.|++++ +++| ||+||+|+.+|+++++
T Consensus 25 ~v~F~V~~gSnp~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~G-PlS~R~t~~~G~~~va 98 (118)
T PLN00115 25 EVTFKVGKGSSSTSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKG-PFSVRFLVKGGGYRVV 98 (118)
T ss_pred ceEEEECCCCCcceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCC-ceEEEEEEeCCCEEEE
Confidence 7999997 3589997765 4 379999999986 4899 99999999999865 6778 9999999999999999
Q ss_pred ccccCCCCCCCcEEecC-Cc
Q 026331 220 YNVAPPNWSFGQTYTGR-QF 238 (240)
Q Consensus 220 ~~vip~~w~~g~~y~~~-qf 238 (240)
+||||++|+||++|+++ ||
T Consensus 99 ~nViPa~Wk~G~tY~s~vq~ 118 (118)
T PLN00115 99 DDVIPESFKAGSVYKTGIQV 118 (118)
T ss_pred CceECCCCCCCCEEeccccC
Confidence 99999999999999999 97
No 8
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=99.86 E-value=1.4e-21 Score=144.22 Aligned_cols=77 Identities=48% Similarity=0.944 Sum_probs=64.1
Q ss_pred eeEEEcC--ccceEEEEEEeecCCcCeEEEEEEcCCC-ceeEcCCCCCceEEEC-CCCCCcceEEEEEecC-CeEEEEcc
Q 026331 147 IRFTING--HSYFNLVLITNVGGAGDVRAVSIKGSRT-RWQPMSRNWGQNWQSN-SYLNGQSLSFVVTTSN-GHSVVSYN 221 (240)
Q Consensus 147 i~~~~~~--s~~w~av~v~n~~g~~~I~sVev~~~g~-~W~~m~r~~gn~W~~~-~~~~g~p~~vRvT~~~-G~~vv~~~ 221 (240)
|+|++++ ++||++|+|.|++|.++|++|||+++++ +|++|+|+||++|+++ .++++ ||+||||+.+ |++++++|
T Consensus 1 v~f~V~~gS~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~~-pls~Rvts~~~G~~vv~~n 79 (82)
T PF01357_consen 1 VRFTVKGGSNPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPGG-PLSFRVTSGDSGQTVVADN 79 (82)
T ss_dssp EEEEE-TT-BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS--S-SEEEEEEETTTSEEEEEEE
T ss_pred CEEEECCCCCCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcCC-CEEEEEEEcCCCeEEEEec
Confidence 6889974 6999999999999999999999998874 6999999999999998 55555 9999999977 99999999
Q ss_pred ccC
Q 026331 222 VAP 224 (240)
Q Consensus 222 vip 224 (240)
|||
T Consensus 80 ViP 82 (82)
T PF01357_consen 80 VIP 82 (82)
T ss_dssp EE-
T ss_pred ccC
Confidence 998
No 9
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.77 E-value=4.5e-19 Score=129.38 Aligned_cols=73 Identities=38% Similarity=0.784 Sum_probs=61.2
Q ss_pred EEEechhhcCCCCCCCceEEEEEcC-CCCc--ccC--CeEEEEEeCCCCCCCCCCCCCCceeeCHHHHHhhchhcCCccc
Q 026331 59 TAALSTALFNNGLSCGACFQIMCAN-DPQW--CLR--GSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYRAGIVP 133 (240)
Q Consensus 59 ~aA~s~~~~~~g~~CG~C~~v~~~~-~~~~--C~~--g~v~v~V~D~Cp~~~~C~~~~~~lDLs~~aF~~la~~~~G~~~ 133 (240)
+||++..+|++|..||+||+++|.. .... |.. ++|+|+|+|+||+ |. .+|||||+.||++|+.++.|+++
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~---~~--~~~lDLS~~aF~~la~~~~G~i~ 75 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPG---CP--PNHLDLSPAAFKALADPDAGVIP 75 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TT---SS--SSEEEEEHHHHHHTBSTTCSSEE
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCC---Cc--CCEEEeCHHHHHHhCCCCceEEE
Confidence 5899999999999999999999942 1222 776 8999999999997 86 59999999999999999999999
Q ss_pred eEE
Q 026331 134 VIY 136 (240)
Q Consensus 134 i~w 136 (240)
|+|
T Consensus 76 V~w 78 (78)
T PF03330_consen 76 VEW 78 (78)
T ss_dssp EEE
T ss_pred EEC
Confidence 999
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=99.14 E-value=3.1e-11 Score=92.84 Aligned_cols=60 Identities=28% Similarity=0.559 Sum_probs=44.1
Q ss_pred CCCCCCceEEEEEcCCCCcccCCeEEEEEeCCCCCCCCCCCCCCceeeCHHHHHhhch----hcCCccceEEEEeee
Q 026331 69 NGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ----YRAGIVPVIYRRVRC 141 (240)
Q Consensus 69 ~g~~CG~C~~v~~~~~~~~C~~g~v~v~V~D~Cp~~~~C~~~~~~lDLs~~aF~~la~----~~~G~~~i~w~~V~C 141 (240)
+...||+|++||...+ +.+++++|+|+|+. ++|||.+.+|++|-. ...|.+.|+|++|+|
T Consensus 56 gq~~CGkClrVTNt~t-----ga~~~~RIVDqCsn--------GGLDld~~vF~~iDtdG~G~~~Ghl~V~y~fV~C 119 (119)
T PF00967_consen 56 GQDSCGKCLRVTNTAT-----GAQVTVRIVDQCSN--------GGLDLDPTVFNQIDTDGQGYAQGHLIVDYEFVDC 119 (119)
T ss_dssp SGGGTT-EEEEE-TTT-------EEEEEEEEE-SS--------SSEES-SSSHHHH-SSSHHHHHTEEEEEEEEE--
T ss_pred CcccccceEEEEecCC-----CcEEEEEEEEcCCC--------CCcccChhHHhhhccCCcccccceEEEEEEEEcC
Confidence 4467999999998642 34999999999985 589999999999953 468999999999998
No 11
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.35 E-value=2.2e-06 Score=67.29 Aligned_cols=66 Identities=23% Similarity=0.410 Sum_probs=47.5
Q ss_pred eEEEech-hhcCCCCCCCceEEEEEcCCCCcccCCeEEEEEeCCCCCCCCCCCCCCceeeCHHHHHhhch---hcCCccc
Q 026331 58 NTAALST-ALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ---YRAGIVP 133 (240)
Q Consensus 58 ~~aA~s~-~~~~~g~~CG~C~~v~~~~~~~~C~~g~v~v~V~D~Cp~~~~C~~~~~~lDLs~~aF~~la~---~~~G~~~ 133 (240)
.|.+... .-|+ +..||.|+|++.. +++|.|..+|.-+ +.|+|+.+||+.|.+ ...|+|+
T Consensus 44 ~IGg~~~V~gWn-S~~CGtC~~lty~-------g~si~vlaID~a~---------~gfnis~~A~n~LT~g~a~~lG~V~ 106 (119)
T PF07249_consen 44 YIGGAPAVAGWN-SPNCGTCWKLTYN-------GRSIYVLAIDHAG---------GGFNISLDAMNDLTNGQAVELGRVD 106 (119)
T ss_dssp SEEEETT--STT--TTTT-EEEEEET-------TEEEEEEEEEE-S---------SSEEE-HHHHHHHHTS-CCCC-EEE
T ss_pred eeccccccccCC-CCCCCCeEEEEEC-------CeEEEEEEEecCC---------CcccchHHHHHHhcCCcccceeEEE
Confidence 3666654 3474 5789999999994 4599999999954 459999999999986 3689999
Q ss_pred eEEEEee
Q 026331 134 VIYRRVR 140 (240)
Q Consensus 134 i~w~~V~ 140 (240)
++|++|+
T Consensus 107 a~~~qV~ 113 (119)
T PF07249_consen 107 ATYTQVD 113 (119)
T ss_dssp -EEEEE-
T ss_pred EEEEEcC
Confidence 9999996
No 12
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=97.88 E-value=0.00014 Score=62.16 Aligned_cols=94 Identities=20% Similarity=0.217 Sum_probs=68.2
Q ss_pred EEEEEeCCC-CCCCCCccccCCCcCCCCCCCCeEEEechhhcCCCCCCCceEEEEEcCCCCcccCCeEEEEEeCCCCCCC
Q 026331 27 AHATFYGGG-DASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGG 105 (240)
Q Consensus 27 g~aT~Y~~~-~~~~~~~GaCg~~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~v~~~~~~~~C~~g~v~v~V~D~Cp~~~ 105 (240)
|.|+|||.. .+ ...|.|-.- + ...+.||-. . .-.|..++|+...+ +.+++|+|.|++|.
T Consensus 1 G~ASwYg~~f~G---~~TAnGe~y-~---~~~~tAAHk-t-----LPlgT~V~VtNl~n-----grsviVrVnDRGPf-- 60 (208)
T TIGR00413 1 GLASWYGPKFHG---RKTANGEVY-N---MKALTAAHK-T-----LPFNTYVKVTNLHN-----NRSVIVRINDRGPF-- 60 (208)
T ss_pred CEEeEeCCCCCC---CcCCCCeec-C---CCccccccc-c-----CCCCCEEEEEECCC-----CCEEEEEEeCCCCC--
Confidence 679999863 11 134554221 1 122455544 2 25889999999753 45999999999996
Q ss_pred CCCCCCCceeeCHHHHHhhchhcCCccceEEEEeeeee
Q 026331 106 WCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKR 143 (240)
Q Consensus 106 ~C~~~~~~lDLs~~aF~~la~~~~G~~~i~w~~V~C~~ 143 (240)
= +..-+|||.+|+.+|.-...|+.+|+.+.+....
T Consensus 61 -~--~gRiIDLS~aAA~~Lg~~~~G~a~V~vevl~~~~ 95 (208)
T TIGR00413 61 -S--DDRIIDLSHAAAREIGLISRGVGQVRIEVLHVAK 95 (208)
T ss_pred -C--CCCEEECCHHHHHHcCCCcCceEEEEEEEEecCC
Confidence 1 2468999999999999999999999999998754
No 13
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=97.51 E-value=0.00029 Score=61.12 Aligned_cols=60 Identities=15% Similarity=0.227 Sum_probs=51.6
Q ss_pred CCceEEEEEcCCCCcccCCeEEEEEeCCCCCCCCCCCCCCceeeCHHHHHhhchhcCCccceEEEEeeee
Q 026331 73 CGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCK 142 (240)
Q Consensus 73 CG~C~~v~~~~~~~~C~~g~v~v~V~D~Cp~~~~C~~~~~~lDLs~~aF~~la~~~~G~~~i~w~~V~C~ 142 (240)
=|.-++||..++ +.+|+|+|.|++| +.. .-.+|||..|+++|+-...|+.+|+.+.+.+.
T Consensus 119 ~~t~v~VtNl~N-----grsvvVRINDRGP----f~~-gRiIDlS~aAA~~l~~~~~G~a~V~i~~l~~~ 178 (233)
T COG0797 119 LPTYVRVTNLDN-----GRSVVVRINDRGP----FVS-GRIIDLSKAAADKLGMIRSGVAKVRIEVLGVA 178 (233)
T ss_pred CCCEEEEEEccC-----CcEEEEEEeCCCC----CCC-CcEeEcCHHHHHHhCCccCceEEEEEEEeccc
Confidence 467899998864 4599999999999 443 46899999999999999999999999999865
No 14
>PRK10672 rare lipoprotein A; Provisional
Probab=97.13 E-value=0.004 Score=57.49 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=46.6
Q ss_pred CCCceEEEEEcCCCCcccCCeEEEEEeCCCCCCCCCCCCCCceeeCHHHHHhhchhcCCccceEEEEe
Q 026331 72 SCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRV 139 (240)
Q Consensus 72 ~CG~C~~v~~~~~~~~C~~g~v~v~V~D~Cp~~~~C~~~~~~lDLs~~aF~~la~~~~G~~~i~w~~V 139 (240)
--|..++||...+ +.+|+|+|.|++|.. +..-+|||..|+.+|.-...+.+.|+.-.|
T Consensus 114 Plps~vrVtNl~n-----grsvvVrVnDRGP~~-----~gRiiDLS~aAA~~Lg~~~~~~V~ve~i~v 171 (361)
T PRK10672 114 PIPSYVRVTNLAN-----GRMIVVRINDRGPYG-----PGRVIDLSRAAADRLNTSNNTKVRIDPIIV 171 (361)
T ss_pred CCCCEEEEEECCC-----CcEEEEEEeCCCCCC-----CCCeeEcCHHHHHHhCCCCCceEEEEEEee
Confidence 4678999999864 459999999999961 246899999999999876666677776666
No 15
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=90.07 E-value=0.29 Score=41.79 Aligned_cols=53 Identities=26% Similarity=0.316 Sum_probs=30.9
Q ss_pred EEEechhhcCCCCCCCceEEEEEcCCCCcccCCeEEEEEeCCCCCCCCCCCCCCceeeCH
Q 026331 59 TAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQ 118 (240)
Q Consensus 59 ~aA~s~~~~~~g~~CG~C~~v~~~~~~~~C~~g~v~v~V~D~Cp~~~~C~~~~~~lDLs~ 118 (240)
+||++-.-......|++|||++=++.+. .+++.+|+|++.=-+ -..+||||.-
T Consensus 70 faA~~~~G~~e~~~Cc~Cy~LtFt~g~l--~GKkmiVQ~tNtG~d-----lg~n~FDl~i 122 (201)
T PF02015_consen 70 FAAASITGGSESSWCCACYELTFTSGPL--KGKKMIVQVTNTGGD-----LGSNQFDLAI 122 (201)
T ss_dssp EEEEE-TT--HHHHTT-EEEEEE-SSTT--TT-EEEEEEEEE-TT-----TTTTEEEEE-
T ss_pred eeeeeecCCCCCCcccceEEEEEcCCCc--CCCEeEEEecccCCC-----CCCCeEEEEe
Confidence 5666522112235799999999875432 245999999988543 1358999963
No 16
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=80.00 E-value=3.5 Score=32.79 Aligned_cols=48 Identities=17% Similarity=0.365 Sum_probs=28.1
Q ss_pred Cc-CeEEEEEEcCCC-ceeEcCCC--CC-----------ceEEECC--CC-CCc-ceEEEEEecCCe
Q 026331 168 AG-DVRAVSIKGSRT-RWQPMSRN--WG-----------QNWQSNS--YL-NGQ-SLSFVVTTSNGH 215 (240)
Q Consensus 168 ~~-~I~sVev~~~g~-~W~~m~r~--~g-----------n~W~~~~--~~-~g~-p~~vRvT~~~G~ 215 (240)
.+ +|.+|||+.+++ +|++.+.. .. -.|++.= +. +|. -+.+|-||.+|.
T Consensus 39 ~g~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~g~~~~aW~~W~~~~~~~~~~G~~~i~~RA~D~~G~ 105 (131)
T PF03404_consen 39 GGRGIARVEVSTDGGKTWQEATLDGPESPPRYGEARWAWRLWEYDWPPPSLPGEYTIMVRATDESGN 105 (131)
T ss_dssp TT--EEEEEEESSTTSSEEE-EEESTSCCCHHTS-TTS-EEEEEEEEECSHCCEEEEEEEEEETTS-
T ss_pred CCcceEEEEEEeCCCCCcEEeEeccCCCcccccccCcccceeeeccCcCccccceEEEEEEeecccc
Confidence 35 899999998875 79864432 21 1465431 11 342 567777888874
No 17
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=78.18 E-value=4.7 Score=36.82 Aligned_cols=48 Identities=21% Similarity=0.335 Sum_probs=31.6
Q ss_pred CcCeEEEEEEcCCC-ceeEcCCCCC-------ceEEECC-CCCCc-ceEEEEEecCCe
Q 026331 168 AGDVRAVSIKGSRT-RWQPMSRNWG-------QNWQSNS-YLNGQ-SLSFVVTTSNGH 215 (240)
Q Consensus 168 ~~~I~sVev~~~g~-~W~~m~r~~g-------n~W~~~~-~~~g~-p~~vRvT~~~G~ 215 (240)
...|++|||+.+|+ +|++..-... -.|++.- +.+|. -+.+|.+|.+|.
T Consensus 235 ~~~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~~~~G~~~l~vRA~D~~g~ 292 (317)
T cd02110 235 GRGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWDLPPGEYELVARATDSTGN 292 (317)
T ss_pred CCCEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEEcCCCcEEEEEEEECCCCC
Confidence 35799999999886 8986544211 2455542 22343 677888888884
No 18
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=77.69 E-value=1.9 Score=26.78 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=14.7
Q ss_pred ChhHHH-HHHHHHHhhhhhcc
Q 026331 1 MALWVI-LCVGFLSLVSSVQG 20 (240)
Q Consensus 1 ~~~~~~-~~~~~~~l~~~~~~ 20 (240)
||.|.+ +++++|+|+++..+
T Consensus 1 Mk~l~~a~~l~lLal~~a~~~ 21 (36)
T PF08194_consen 1 MKCLSLAFALLLLALAAAVPA 21 (36)
T ss_pred CceeHHHHHHHHHHHHhcccC
Confidence 788877 77777777776655
No 19
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=74.45 E-value=8.1 Score=29.10 Aligned_cols=48 Identities=17% Similarity=0.356 Sum_probs=34.1
Q ss_pred eEEEEEEcCCCcee----EcCCCCCceEEECCC---------CCCcceEEEEEecCCeEEE
Q 026331 171 VRAVSIKGSRTRWQ----PMSRNWGQNWQSNSY---------LNGQSLSFVVTTSNGHSVV 218 (240)
Q Consensus 171 I~sVev~~~g~~W~----~m~r~~gn~W~~~~~---------~~g~p~~vRvT~~~G~~vv 218 (240)
-++|+|.++-.+|. +|+|.....|++.-+ ..+..+.++|+..+|+++.
T Consensus 16 A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~ 76 (99)
T cd02854 16 AEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWID 76 (99)
T ss_pred CCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEE
Confidence 45788886656775 488876679976422 2466899999988887653
No 20
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=65.02 E-value=4.7 Score=30.43 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHhhhhhcc
Q 026331 3 LWVILCVGFLSLVSSVQG 20 (240)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~ 20 (240)
||.+||++||++.|.|+|
T Consensus 8 lL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 8 LLGLLLAALLLISSEVAA 25 (95)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 445555666666666665
No 21
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=59.20 E-value=24 Score=32.99 Aligned_cols=48 Identities=19% Similarity=0.505 Sum_probs=30.6
Q ss_pred CcCeEEEEEEcCCC-ceeEcC--CCCCc----eEEEC--CCCCCc-ceEEEEEecCCe
Q 026331 168 AGDVRAVSIKGSRT-RWQPMS--RNWGQ----NWQSN--SYLNGQ-SLSFVVTTSNGH 215 (240)
Q Consensus 168 ~~~I~sVev~~~g~-~W~~m~--r~~gn----~W~~~--~~~~g~-p~~vRvT~~~G~ 215 (240)
...|++|||+.+|+ +|++.. +..+. .|++. -+.+|. -+.+|-||.+|+
T Consensus 287 ~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~W~~~~~~~~~G~~~l~~RA~D~~G~ 344 (367)
T cd02114 287 GSGIRRVDVSADGGDSWTQATLGPDLGRFSFRGWKLTLDGVKKGPLTLMVRATNNDGQ 344 (367)
T ss_pred CCCEEEEEEEeCCCCcceEeEeCCCCCCcEEEEEEEEEECCCCCcEEEEEEEEcCCCC
Confidence 35799999999875 898643 22222 46654 122342 567777888884
No 22
>PLN00177 sulfite oxidase; Provisional
Probab=58.30 E-value=25 Score=33.17 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=29.7
Q ss_pred cCCcCeEEEEEEcCCC-ceeEcCCC---------------CC--ceEEECCCCCCc-ceEEEEEecCCe
Q 026331 166 GGAGDVRAVSIKGSRT-RWQPMSRN---------------WG--QNWQSNSYLNGQ-SLSFVVTTSNGH 215 (240)
Q Consensus 166 ~g~~~I~sVev~~~g~-~W~~m~r~---------------~g--n~W~~~~~~~g~-p~~vRvT~~~G~ 215 (240)
++..+|++|||+.+|+ +|+..... .+ -.|++.-..+|. -+-+|-||..|+
T Consensus 293 ggg~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~~~~~~~aW~~w~~~~~~~g~~~l~~RA~D~~G~ 361 (393)
T PLN00177 293 GGGRGIERVDISVDGGKTWVEASRYQKPGVPYISDDISSDKWAWVLFEATVDVPQSTEIVAKAVDSAAN 361 (393)
T ss_pred CCCccEEEEEEEcCCCCCceeeeeccccccccccccccCCccEEEEEEEEecCCCCeEEEEEEEcCCCC
Confidence 3334699999999875 89865431 11 134433223342 566677777773
No 23
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=56.10 E-value=23 Score=32.24 Aligned_cols=37 Identities=27% Similarity=0.366 Sum_probs=27.8
Q ss_pred ceEEEEEec-CCeEEEEccccC--CCCCCCcEEecCCccC
Q 026331 204 SLSFVVTTS-NGHSVVSYNVAP--PNWSFGQTYTGRQFRY 240 (240)
Q Consensus 204 p~~vRvT~~-~G~~vv~~~vip--~~w~~g~~y~~~qf~~ 240 (240)
+++|+|++. ..++|-+.+|+- ++|++=++|.+.+|.|
T Consensus 90 ~l~i~LsS~v~~~~VfaPnVlvLD~~~~~~~~y~s~~F~y 129 (303)
T PRK10564 90 ELTLTLSSLVNDKSVFAPNVLVLDQNMRPAAFYPSSYFTY 129 (303)
T ss_pred cEEEEEEEEecCCcEEeceEEEEcCCCCEEEEecccceEE
Confidence 789999983 334777777443 8899988898887765
No 24
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=51.29 E-value=35 Score=31.40 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=29.5
Q ss_pred CCcCeEEEEEEcCCC-ceeEcCCC--CC----ceEEEC-CCCCC-cceEEEEEecCCe
Q 026331 167 GAGDVRAVSIKGSRT-RWQPMSRN--WG----QNWQSN-SYLNG-QSLSFVVTTSNGH 215 (240)
Q Consensus 167 g~~~I~sVev~~~g~-~W~~m~r~--~g----n~W~~~-~~~~g-~p~~vRvT~~~G~ 215 (240)
|.++|++|||+.+++ +|+..... .+ -.|++. .+..+ --+.+|-||..|+
T Consensus 236 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~w~~~w~~~~g~~~i~~RA~D~~G~ 293 (326)
T cd02113 236 GRGRIRRVDVSFDGGRTWQDARLEGPVLPKALTRFRLPWKWDGRPAVLQSRATDETGY 293 (326)
T ss_pred CCCCEEEEEEEcCCCCCceECccCCCCCCCceEEEeEEEEcCCCeEEEEEEEEcCCCC
Confidence 345799999999875 89865442 11 133332 12223 2567777888774
No 25
>PF15240 Pro-rich: Proline-rich
Probab=50.84 E-value=10 Score=31.97 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHhhhhhccCCCce
Q 026331 3 LWVILCVGFLSLVSSVQGYGGWI 25 (240)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~ 25 (240)
||+||-|+||+|.|+=....+..
T Consensus 2 LlVLLSvALLALSSAQ~~dEdv~ 24 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQSTDEDVS 24 (179)
T ss_pred hhHHHHHHHHHhhhccccccccc
Confidence 45555577677766666554443
No 26
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=50.10 E-value=9.5 Score=23.99 Aligned_cols=11 Identities=36% Similarity=0.854 Sum_probs=9.5
Q ss_pred cccCCCCCCCc
Q 026331 221 NVAPPNWSFGQ 231 (240)
Q Consensus 221 ~vip~~w~~g~ 231 (240)
-+.|+||+||.
T Consensus 10 v~tPanW~pGd 20 (40)
T PF10417_consen 10 VATPANWKPGD 20 (40)
T ss_dssp SBBCTTTCTTS
T ss_pred cccCcCCCCCC
Confidence 48899999986
No 27
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=44.12 E-value=61 Score=30.25 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=30.2
Q ss_pred cCCcCeEEEEEEcCCC-ceeEcCCC--C--------C--ceEEECCC-CC-Cc-ceEEEEEecCCe
Q 026331 166 GGAGDVRAVSIKGSRT-RWQPMSRN--W--------G--QNWQSNSY-LN-GQ-SLSFVVTTSNGH 215 (240)
Q Consensus 166 ~g~~~I~sVev~~~g~-~W~~m~r~--~--------g--n~W~~~~~-~~-g~-p~~vRvT~~~G~ 215 (240)
+|...|++|||+.+|+ +|+...-. . + -.|.+.-. .+ +. -+.+|-||..|+
T Consensus 273 gg~~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~~aW~~W~~~~~~~~~g~~~l~~RA~D~~G~ 338 (365)
T cd02111 273 GGGRKIVRVDVSLDGGRTWKVAELEQEENVWPSGRKWAWTLWEATVPVPAGKEAEIIAKAVDSAYN 338 (365)
T ss_pred CCCCcEEEEEEECCCCCcceeCCcCCCCCccccCCCCEeEEEEEEEEeCCCCeEEEEEEEEcCCCC
Confidence 3434799999999875 79865432 1 1 23544421 12 22 567777888874
No 28
>PF15052 TMEM169: TMEM169 protein family
Probab=43.91 E-value=10 Score=30.11 Aligned_cols=30 Identities=27% Similarity=0.606 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHhhhhhccCCCceEEEEEEeCC
Q 026331 2 ALWVILCVGFLSLVSSVQGYGGWINAHATFYGG 34 (240)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~~~~~~~g~aT~Y~~ 34 (240)
-+|+++++.+..+.|.+.+ ++-|+.|||+-
T Consensus 17 ~L~sl~clP~vfv~s~~~s---FY~GTlTWYNi 46 (133)
T PF15052_consen 17 FLWSLLCLPFVFVLSFIYS---FYYGTLTWYNI 46 (133)
T ss_pred EeehHHHhHHHHHHHHHHH---hhhhhheeeee
Confidence 3688999998887777765 68899999974
No 29
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=42.99 E-value=8 Score=24.50 Aligned_cols=19 Identities=26% Similarity=0.555 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHhhhhhc
Q 026331 1 MALWVILCVGFLSLVSSVQ 19 (240)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~~ 19 (240)
||+|.-.++.|.||...++
T Consensus 1 MAlwlt~vialtClggLas 19 (43)
T PF03487_consen 1 MALWLTVVIALTCLGGLAS 19 (43)
T ss_dssp -------------------
T ss_pred ChHHHHHHHHHHHhcccCC
Confidence 8999999999888877665
No 30
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=42.41 E-value=81 Score=22.95 Aligned_cols=34 Identities=21% Similarity=0.424 Sum_probs=20.3
Q ss_pred eEcCCCC-CceEEE--CCCCCCcceEEEEEecCCeEE
Q 026331 184 QPMSRNW-GQNWQS--NSYLNGQSLSFVVTTSNGHSV 217 (240)
Q Consensus 184 ~~m~r~~-gn~W~~--~~~~~g~p~~vRvT~~~G~~v 217 (240)
.+|.+.. ..+|.+ +....+..+.+|++..+|.+.
T Consensus 49 ~~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~ 85 (106)
T cd02855 49 HPMRRRGDSGVWELFIPGLGEGELYKYEILGADGHLP 85 (106)
T ss_pred eecEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEE
Confidence 3677654 567874 322333468999987555443
No 31
>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR). Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=40.97 E-value=81 Score=29.73 Aligned_cols=46 Identities=13% Similarity=0.095 Sum_probs=28.6
Q ss_pred CeEEEEEEcCCC-ceeEcCCC--C--------C--ceEEECCC---CCCc-ceEEEEEecCCe
Q 026331 170 DVRAVSIKGSRT-RWQPMSRN--W--------G--QNWQSNSY---LNGQ-SLSFVVTTSNGH 215 (240)
Q Consensus 170 ~I~sVev~~~g~-~W~~m~r~--~--------g--n~W~~~~~---~~g~-p~~vRvT~~~G~ 215 (240)
+|++|||+.+|+ +|+..... . + -.|++.-. .+|. -+.+|-||..|+
T Consensus 301 ~I~rVeVS~DgG~tW~~A~L~~~~~~~~~~~~~aW~~W~~~~~~~~~~G~~~l~~RA~D~~G~ 363 (386)
T cd02112 301 RVTRVEVSLDDGKSWKLASIDYPEDPTKYGKCWCWCFWSLDVPLSELLAAKEICVRAWDESMN 363 (386)
T ss_pred cEEEEEEEcCCCCCceeCCCCCCCCccccCCCCEeEEEEEeeecccCCCcEEEEEEEEcCCCC
Confidence 799999999875 79865432 1 1 23454421 1342 567777787773
No 32
>PF07148 MalM: Maltose operon periplasmic protein precursor (MalM); InterPro: IPR010794 This family consists of several maltose operon periplasmic protein precursor (MalM) sequences. The function of this family is unknown [].; GO: 0008643 carbohydrate transport, 0042597 periplasmic space
Probab=31.51 E-value=41 Score=26.90 Aligned_cols=46 Identities=26% Similarity=0.343 Sum_probs=23.8
Q ss_pred ceEEECCCCCCcceEEEEEecC-CeEEEEccccC--CCCCCCcEEecCCcc
Q 026331 192 QNWQSNSYLNGQSLSFVVTTSN-GHSVVSYNVAP--PNWSFGQTYTGRQFR 239 (240)
Q Consensus 192 n~W~~~~~~~g~p~~vRvT~~~-G~~vv~~~vip--~~w~~g~~y~~~qf~ 239 (240)
+.|+++. ..| +++|+|++-- ...+-+.+|+- ++|++=+.|++.+|.
T Consensus 7 aaf~lP~-~~g-~l~i~l~S~v~~~~vfaP~vliLD~~~~~~~~~~~~~F~ 55 (135)
T PF07148_consen 7 AAFRLPA-NRG-SLSITLSSYVKDKSVFAPNVLILDENFQPVRTYPSSDFK 55 (135)
T ss_pred EEEEccC-CCc-cEEEEEEEEEcCCcEEeeeEEEECCCCCEEEEcChHHeE
Confidence 4455542 123 6666666633 55555555333 556665555555443
No 33
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=30.71 E-value=2.6e+02 Score=22.12 Aligned_cols=34 Identities=26% Similarity=0.435 Sum_probs=25.3
Q ss_pred CceeEEEc------CccceEEEEEEeecCCcCeEEEEEEcC
Q 026331 145 GGIRFTIN------GHSYFNLVLITNVGGAGDVRAVSIKGS 179 (240)
Q Consensus 145 g~i~~~~~------~s~~w~av~v~n~~g~~~I~sVev~~~ 179 (240)
..+.+.+. +.+||.-+.|+|.++ ...++|+|++.
T Consensus 34 p~l~v~~~~~~r~~~gqyyVpF~V~N~gg-~TAasV~V~ge 73 (122)
T TIGR02588 34 AVLEVAPAEVERMQTGQYYVPFAIHNLGG-TTAAAVNIRGE 73 (122)
T ss_pred CeEEEeehheeEEeCCEEEEEEEEEeCCC-cEEEEEEEEEE
Confidence 35555553 346999999999876 68999999753
No 34
>PLN02252 nitrate reductase [NADPH]
Probab=30.02 E-value=1.3e+02 Score=31.56 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=32.3
Q ss_pred EeecCCcCeEEEEEEcCCC-ceeEcCCCC-------C-----ceEEECC---CCCCc-ceEEEEEecCCe
Q 026331 163 TNVGGAGDVRAVSIKGSRT-RWQPMSRNW-------G-----QNWQSNS---YLNGQ-SLSFVVTTSNGH 215 (240)
Q Consensus 163 ~n~~g~~~I~sVev~~~g~-~W~~m~r~~-------g-----n~W~~~~---~~~g~-p~~vRvT~~~G~ 215 (240)
.+.+|...|++|||..+|+ +|+...... + -.|++.- .+.|. -+.+|-+|..|.
T Consensus 366 A~sggg~~I~rVEVS~DgG~tW~~a~l~~~~~~~~~g~~~~W~~W~~~~~~~~~~g~~~i~vRA~D~~g~ 435 (888)
T PLN02252 366 AYSGGGRKVTRVEVSLDGGETWRLCDLDHPEKPTKYGKYWCWCFWSLDVEVLDLLGAKEIAVRAWDESMN 435 (888)
T ss_pred EECCCCCceEEEEEEcCCCCcceeCccCCCCCccccCCccEEEEEEEeEecccCCCceEEEEEEEcCCCC
Confidence 4444444799999998875 898655421 1 2344442 23342 567777877773
No 35
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=29.71 E-value=1e+02 Score=23.28 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=16.5
Q ss_pred EEECCCCCCcceEEEEEecCCeEEEEc
Q 026331 194 WQSNSYLNGQSLSFVVTTSNGHSVVSY 220 (240)
Q Consensus 194 W~~~~~~~g~p~~vRvT~~~G~~vv~~ 220 (240)
|.+...-.| +++|+.+|.+|+.....
T Consensus 72 F~~~~~~~g-~l~v~~~Dn~G~~~~~~ 97 (100)
T PF08770_consen 72 FSFKGKKSG-TLTVTWTDNKGNSFSAE 97 (100)
T ss_dssp EEEEESSSE-EEEEEEEETTS-EEEEE
T ss_pred EEEecCCCc-EEEEEEEECCCCEEEEE
Confidence 344333345 89999999999776653
No 36
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=28.42 E-value=89 Score=24.60 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=17.9
Q ss_pred cceEEEEEecCCe-EEEEccccCCCCCCCcE
Q 026331 203 QSLSFVVTTSNGH-SVVSYNVAPPNWSFGQT 232 (240)
Q Consensus 203 ~p~~vRvT~~~G~-~vv~~~vip~~w~~g~~ 232 (240)
..++|.|||...+ .|+...+.|++|+.|+.
T Consensus 71 ~~~~F~i~D~~~~i~V~Y~G~~Pd~F~eg~~ 101 (131)
T PF03100_consen 71 NTLTFTITDGGKEIPVVYTGPLPDLFREGQG 101 (131)
T ss_dssp SEEEEEEE-SS-EEEEEEES--CTT--TTSE
T ss_pred CEEEEEEEECCcEEEEEECCCCCccccCCCe
Confidence 3788999988654 55567899999988764
No 37
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=27.58 E-value=1.1e+02 Score=21.51 Aligned_cols=44 Identities=27% Similarity=0.499 Sum_probs=27.5
Q ss_pred EEEEEEcCCCcee--EcCCCCCceEEECCCC-CCcceEEEEEecCCeEE
Q 026331 172 RAVSIKGSRTRWQ--PMSRNWGQNWQSNSYL-NGQSLSFVVTTSNGHSV 217 (240)
Q Consensus 172 ~sVev~~~g~~W~--~m~r~~gn~W~~~~~~-~g~p~~vRvT~~~G~~v 217 (240)
++|+|.++=.+|. +|+|.....|++.-++ +| .+..|+. .+|.+.
T Consensus 14 ~~V~v~G~fn~W~~~~m~~~~~G~w~~~~~l~~G-~y~Ykf~-vdg~~~ 60 (82)
T cd02861 14 DSVYLAGSFNNWNAIPMEREGDGLWVVTVELRPG-RYEYKFV-VDGEWV 60 (82)
T ss_pred CEEEEEeECCCCCcccCEECCCCcEEEEEeCCCC-cEEEEEE-ECCEEe
Confidence 6888886545674 6888765678765433 34 4556655 356655
No 38
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=26.42 E-value=90 Score=25.71 Aligned_cols=28 Identities=25% Similarity=0.282 Sum_probs=20.9
Q ss_pred ceEEEEEecCCe-EEEEccccCCCCCCCc
Q 026331 204 SLSFVVTTSNGH-SVVSYNVAPPNWSFGQ 231 (240)
Q Consensus 204 p~~vRvT~~~G~-~vv~~~vip~~w~~g~ 231 (240)
.++|+|||...+ .|....++|+-|+.|+
T Consensus 73 ~v~F~vtD~~~~v~V~Y~GilPDlFrEGq 101 (155)
T PRK13159 73 KVSFTVIDKNAATQVEYTGILPDLFRDNQ 101 (155)
T ss_pred EEEEEEEcCCcEEEEEEccCCCccccCCC
Confidence 578888887654 4445679999998876
No 39
>PF12863 DUF3821: Domain of unknown function (DUF3821); InterPro: IPR024277 This is a domain largely confined to sequences from Methanomicrobiales. It is found in putative lipases but the function is unknown.
Probab=24.57 E-value=4.4e+02 Score=22.71 Aligned_cols=94 Identities=17% Similarity=0.243 Sum_probs=43.2
Q ss_pred CceeeCHHHHHhhchhcCCccceEEEEeeeeeCCceeEEEcCccceEEEEEEeecCCcCeEEEEEEcCC-CceeEcCCCC
Q 026331 112 HHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSR-TRWQPMSRNW 190 (240)
Q Consensus 112 ~~lDLs~~aF~~la~~~~G~~~i~w~~V~C~~~g~i~~~~~~s~~w~av~v~n~~g~~~I~sVev~~~g-~~W~~m~r~~ 190 (240)
.+|.++|.+|..-. | .|..-+=...+.+.|.|+.-. ++|-|.+..-..+|..-.|.... -+++- .
T Consensus 48 ~~FyV~P~~f~~~t----G----~WY~~~~~~~~~~aF~V~~Ps--l~l~v~d~~t~~dvt~~~V~~G~~v~FrI----~ 113 (209)
T PF12863_consen 48 TNFYVSPAAFGGKT----G----NWYQWNGTPKGDVAFYVQDPS--LSLKVWDANTDKDVTGKTVPRGDNVNFRI----D 113 (209)
T ss_pred cCEEEChHHhCCcc----c----ceEecCCCCCcceEEEEeCCc--eEEEEEeccccccccCceeccCCeEEEEE----c
Confidence 57999999997543 2 243333322235667775321 34444443322333322222111 11211 1
Q ss_pred CceEEE---CCCCCC-cceEEEEEecCCeEEEE
Q 026331 191 GQNWQS---NSYLNG-QSLSFVVTTSNGHSVVS 219 (240)
Q Consensus 191 gn~W~~---~~~~~g-~p~~vRvT~~~G~~vv~ 219 (240)
.|.+.+ .+.... .+++|+|++.+|.+.+.
T Consensus 114 tNL~~~~~R~g~~~~~~~v~I~V~~P~G~~~t~ 146 (209)
T PF12863_consen 114 TNLYSIFQRGGYTPGDGPVDIKVTTPSGATYTS 146 (209)
T ss_pred ccHHHHhhcCCCCCCcceEEEEEeCCCCcEEEE
Confidence 121211 111111 25999999888865543
No 40
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=24.09 E-value=84 Score=25.04 Aligned_cols=28 Identities=29% Similarity=0.559 Sum_probs=23.0
Q ss_pred hhcCCccceEEEEeeeee---CCceeEEEcC
Q 026331 126 QYRAGIVPVIYRRVRCKR---NGGIRFTING 153 (240)
Q Consensus 126 ~~~~G~~~i~w~~V~C~~---~g~i~~~~~~ 153 (240)
++..|.+.++||.|+-+. .|.+.|.++.
T Consensus 96 ~L~aG~Y~v~WrvvS~DGH~v~G~~sFsV~~ 126 (127)
T COG2372 96 PLKAGVYTVDWRVVSSDGHVVKGSISFSVGA 126 (127)
T ss_pred cCCCCcEEEEEEEEecCCcEeccEEEEEecC
Confidence 467999999999999864 5788888763
No 41
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=23.71 E-value=2.6e+02 Score=19.71 Aligned_cols=49 Identities=18% Similarity=0.345 Sum_probs=31.8
Q ss_pred CeEEEEEEcCCCcee---EcCCCCCceEEECCCCC-CcceEEEEEecCCeEEEEcc
Q 026331 170 DVRAVSIKGSRTRWQ---PMSRNWGQNWQSNSYLN-GQSLSFVVTTSNGHSVVSYN 221 (240)
Q Consensus 170 ~I~sVev~~~g~~W~---~m~r~~gn~W~~~~~~~-g~p~~vRvT~~~G~~vv~~~ 221 (240)
+-++|+|.++=.+|+ +|.|..+. |+..-.++ | .+.+|+. .+|+++...+
T Consensus 11 ~a~~V~v~G~F~~W~~~~pm~~~~~~-~~~~~~L~~g-~y~YkF~-Vdg~w~~d~~ 63 (79)
T cd02859 11 GGKEVYVTGSFDNWKKKIPLEKSGKG-FSATLRLPPG-KYQYKFI-VDGEWRHSPD 63 (79)
T ss_pred CCcEEEEEEEcCCCCccccceECCCC-cEEEEEcCCC-CEEEEEE-ECCEEEeCCC
Confidence 457899987645686 58877655 76543343 4 6677776 3788876643
No 42
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=23.59 E-value=1.3e+02 Score=24.55 Aligned_cols=29 Identities=34% Similarity=0.473 Sum_probs=20.6
Q ss_pred ceEEEEEecCCe-EEEEccccCCCCCCCcE
Q 026331 204 SLSFVVTTSNGH-SVVSYNVAPPNWSFGQT 232 (240)
Q Consensus 204 p~~vRvT~~~G~-~vv~~~vip~~w~~g~~ 232 (240)
.++|+|||.... .|+...++|+.|+-|+-
T Consensus 72 ~~~F~ltD~~~~i~V~Y~G~lPd~F~eg~~ 101 (148)
T PRK13254 72 TVRFVVTDGNATVPVVYTGILPDLFREGQG 101 (148)
T ss_pred EEEEEEEeCCeEEEEEECCCCCccccCCCE
Confidence 688888887543 44456789988887753
No 43
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=23.46 E-value=1.6e+02 Score=20.47 Aligned_cols=49 Identities=16% Similarity=0.359 Sum_probs=30.0
Q ss_pred eEEEEEEcCCCc-e----eEcC-CCCCceEEEC--CCCC-Cc-ceEEEEEecCCeEEEE
Q 026331 171 VRAVSIKGSRTR-W----QPMS-RNWGQNWQSN--SYLN-GQ-SLSFVVTTSNGHSVVS 219 (240)
Q Consensus 171 I~sVev~~~g~~-W----~~m~-r~~gn~W~~~--~~~~-g~-p~~vRvT~~~G~~vv~ 219 (240)
-++|+|...... | .+|+ +....+|++. ..++ |. -+.+||+..+|++...
T Consensus 22 A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~g~~~~~ 80 (85)
T PF02922_consen 22 AKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDDGETPEV 80 (85)
T ss_dssp ESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETTTEEEEE
T ss_pred CCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCCCcEEEE
Confidence 446666544322 3 3677 4667789754 2344 33 7899999988755443
No 44
>PRK10301 hypothetical protein; Provisional
Probab=22.57 E-value=96 Score=24.26 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=21.3
Q ss_pred hhcCCccceEEEEeeeee---CCceeEEEc
Q 026331 126 QYRAGIVPVIYRRVRCKR---NGGIRFTIN 152 (240)
Q Consensus 126 ~~~~G~~~i~w~~V~C~~---~g~i~~~~~ 152 (240)
++..|.+.|+||-|+=+. .|.++|.++
T Consensus 95 ~L~~G~YtV~Wrvvs~DGH~~~G~~~F~V~ 124 (124)
T PRK10301 95 SLKPGTYTVDWHVVSVDGHKTKGHYTFSVK 124 (124)
T ss_pred CCCCccEEEEEEEEecCCCccCCeEEEEEC
Confidence 357899999999999864 467777764
No 45
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=22.29 E-value=2.3e+02 Score=20.61 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=19.5
Q ss_pred EcCCCCCceEEEC--CCCCCcceEEEEEecCCeE
Q 026331 185 PMSRNWGQNWQSN--SYLNGQSLSFVVTTSNGHS 216 (240)
Q Consensus 185 ~m~r~~gn~W~~~--~~~~g~p~~vRvT~~~G~~ 216 (240)
+|.+..+.+|.+. +.+.+.-+.+||...+++.
T Consensus 40 ~m~~~~~gvw~~~v~~~~~g~~Y~y~i~~~~~~~ 73 (100)
T cd02860 40 QMKRGENGVWSVTLDGDLEGYYYLYEVKVYKGET 73 (100)
T ss_pred eeecCCCCEEEEEeCCccCCcEEEEEEEEeceEE
Confidence 6777667788653 3344556788887654433
No 46
>PRK13701 psiB plasmid SOS inhibition protein B; Provisional
Probab=21.20 E-value=2.9e+02 Score=22.35 Aligned_cols=44 Identities=27% Similarity=0.496 Sum_probs=24.8
Q ss_pred CccceEEEEeeeeeCCceeEEEc--C--ccceEEEEEEeecCCcCeEEEEEE
Q 026331 130 GIVPVIYRRVRCKRNGGIRFTIN--G--HSYFNLVLITNVGGAGDVRAVSIK 177 (240)
Q Consensus 130 G~~~i~w~~V~C~~~g~i~~~~~--~--s~~w~av~v~n~~g~~~I~sVev~ 177 (240)
|-++|+-|+-| ..++..+.+= + +|+|+.+++ +.+| .++.-|...
T Consensus 58 GffPVq~Rfsp--~~~~~~l~vCSpG~~sP~W~~Vl~-~~gG-~~~a~v~~~ 105 (144)
T PRK13701 58 GFFPVQVRFTP--AHERFHLALCSPGDVSPVWVLVLV-NAGG-EPFAVVQVQ 105 (144)
T ss_pred CeeeEEEEecC--CCCCeEEEEeCCCCCCcceEEEEE-cCCC-cEEEEEEec
Confidence 44455555544 2235555552 2 899999988 4454 355555444
No 47
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=20.59 E-value=1.3e+02 Score=24.90 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=21.1
Q ss_pred ceEEEEEecCCe-EEEEccccCCCCCCCcE
Q 026331 204 SLSFVVTTSNGH-SVVSYNVAPPNWSFGQT 232 (240)
Q Consensus 204 p~~vRvT~~~G~-~vv~~~vip~~w~~g~~ 232 (240)
.++|+|||.... .|+...++|+.|+.|+-
T Consensus 79 ~v~F~vtD~~~~v~V~Y~GilPDlFrEG~g 108 (159)
T PRK13150 79 KVNFSLYDAEGSVTVSYEGILPDLFREGQG 108 (159)
T ss_pred EEEEEEEcCCcEEEEEEeccCCccccCCCe
Confidence 578888887665 44456799988888763
No 48
>PRK03577 acid shock protein precursor; Provisional
Probab=20.11 E-value=90 Score=23.66 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=14.6
Q ss_pred Ch-hHHHHHHHHHHhhhhhcc
Q 026331 1 MA-LWVILCVGFLSLVSSVQG 20 (240)
Q Consensus 1 ~~-~~~~~~~~~~~l~~~~~~ 20 (240)
|+ ||.+++.+++.|.+.+-+
T Consensus 1 MKKVLAlvVAa~~glSs~AFA 21 (102)
T PRK03577 1 MKKVLALVVAAAMGLSSAAFA 21 (102)
T ss_pred ChHHHHHHHHHHHHhhHHHHh
Confidence 44 778888887778777665
Done!