Query 026332
Match_columns 240
No_of_seqs 148 out of 387
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:39:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026332.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026332hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2998 Uncharacterized conser 100.0 6E-64 1.3E-68 442.5 15.8 232 2-240 64-301 (302)
2 PF04727 ELMO_CED12: ELMO/CED- 100.0 4E-50 8.6E-55 335.2 15.1 168 43-212 2-170 (170)
3 KOG2999 Regulator of Rac1, req 100.0 1.3E-34 2.9E-39 272.6 12.2 198 33-233 275-486 (713)
4 KOG4404 Tandem pore domain K+ 39.7 43 0.00094 31.2 4.2 87 36-128 34-142 (350)
5 PF08262 Lem_TRP: Leucophaea m 37.7 13 0.00029 16.7 0.3 6 89-94 3-8 (10)
6 PF03735 ENT: ENT domain; Int 33.7 68 0.0015 23.2 3.6 32 35-70 25-56 (73)
7 KOG2412 Nuclear-export-signal 33.3 3.3E+02 0.0071 27.3 9.2 87 44-157 335-425 (591)
8 PF11588 DUF3243: Protein of u 27.2 41 0.0009 24.9 1.6 28 48-76 39-66 (81)
9 PHA02819 hypothetical protein; 25.7 1.2E+02 0.0027 21.8 3.7 32 183-220 2-33 (71)
10 PF11159 DUF2939: Protein of u 25.4 76 0.0016 23.5 2.8 24 203-226 34-57 (95)
11 PHA02650 hypothetical protein; 22.0 1.5E+02 0.0033 21.9 3.6 32 183-220 2-33 (81)
12 PHA02844 putative transmembran 21.8 1.5E+02 0.0033 21.6 3.6 33 183-221 2-34 (75)
13 PHA02975 hypothetical protein; 21.7 1.6E+02 0.0035 21.1 3.7 32 183-220 2-33 (69)
14 COG2732 Barstar, RNAse (barnas 21.0 48 0.001 25.0 0.9 50 38-94 12-61 (91)
No 1
>KOG2998 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6e-64 Score=442.52 Aligned_cols=232 Identities=53% Similarity=0.890 Sum_probs=218.9
Q ss_pred Cccccccccchhhhc-----cccccccccCCCcccccccCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHhCCC
Q 026332 2 CADDATCGTPTWIGK-----GLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPD 76 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~L~~~Q~~~L~~l~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~ 76 (240)
++++...|+.+|+|+ ++.|.|.+.+..+..++....+.|.+.++.+++++++|||.+|++|+++|.+||+.++|+
T Consensus 64 ass~~~~~~~~~~~~v~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~l~~~~e~~~~~~yDs~n~~H~e~L~~lwk~~~p~ 143 (302)
T KOG2998|consen 64 ASSEAPPGLISFLGRVMVDKGIKNIVDPNRRIDLAACRHLIPGYRELLQRLEELRQEPYDSDNPDHEELLLDLWKLLYPD 143 (302)
T ss_pred cccccChhhhhhhHHHHHHhccccCCCcccchhhhhccccccCcHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHhCCC
Confidence 578999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCchhhhhhccCCCCCCCCccchhhhhHhhHHHHHhhChHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHh
Q 026332 77 QELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQML 156 (240)
Q Consensus 77 ~~~~~~~~~~Wk~lGFQ~~dP~tDFRg~G~LgL~~LlyF~~~~~~~~~~ll~~q~~~~~~~~yPfA~~sIniT~~L~~~L 156 (240)
+++++++|++|++|||||+||+|||||+|+|||+||+||+++||+.+++++.+|. ++.|+|||||||||||+|++++|
T Consensus 144 ~~l~~lvs~qW~emGfQG~dPsTDFRG~GfL~LeNLlyFa~~~~~~aq~lL~~s~--~~r~eYpfAVvgINIT~m~~qmL 221 (302)
T KOG2998|consen 144 KELPGLVSKQWKEMGFQGADPSTDFRGMGFLGLENLLYFARTYPTSAQRLLLKSR--HPRWEYPFAVVGINITFMAIQML 221 (302)
T ss_pred CccchhHHHHHHHhccCCCCCCcccccchHHHHHHHHHHHHhhhHHHHHHHHhcC--CCccCCceEEEeecHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999985 45699999999999999999999
Q ss_pred hhhcCCCCc-chhhhhhhcccCchhhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 026332 157 DLEATKPRT-FVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLERELLMDDVLQIEEMPS 235 (240)
Q Consensus 157 ~~~~~~~~~-~~~~~f~~ll~~~~~~F~ely~~~f~~f~~~W~~~~at~~dF~~V~~~~r~ql~~~L~~~~~~~v~d~~~ 235 (240)
+.++.+.+. .....| +++.+|+.|||++|..||+.|+++++||||||.|++++|.|++++|...++..++|+|+
T Consensus 222 ~~eal~~~~~~~~~~~-----~~~~~F~~lYc~af~~~d~~Wl~~~~simefn~Vlk~~~~qler~L~~~d~~~~~~lp~ 296 (302)
T KOG2998|consen 222 DLEALKKHFNNIVKVF-----ETEPAFDLLYCYAFLEFDKQWLEQRATIMEFNTVLKSFRRQLERELSLDDVLLITDLPA 296 (302)
T ss_pred Hhhhcccccccccccc-----ccHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhhhhhcccccchh
Confidence 999875443 333333 77899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 026332 236 YSLLS 240 (240)
Q Consensus 236 ~~~~~ 240 (240)
|++|.
T Consensus 297 ~~~L~ 301 (302)
T KOG2998|consen 297 FNLLL 301 (302)
T ss_pred hhhhc
Confidence 99984
No 2
>PF04727 ELMO_CED12: ELMO/CED-12 family; InterPro: IPR006816 This entry represents the ELMO (EnguLfment and Cell MOtility) domain, which is found in a number of eukaryotic proteins involved in the cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility, including CED-12, ELMO-1 and ELMO-2. ELMO-1 and ELMO-2 are components of signalling pathways that regulate phagocytosis and cell migration and are mammalian orthologues of the Caenorhabditis elegans gene, ced-12 that is required for the engulfment of dying cells and cell migration. ELMO-1/2 act in association with DOCK1 and CRK. ELMO-1/2 interact with the SH3-domain of DOCK1 via an SH3-binding site to enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1. ELMO-1/2 could be part of a complex with DOCK1 and Rac1 that could be required to activate Rac Rho small GTPases. Regulatory GTPases in the Ras superfamily employ a cycle of alternating GTP binding and hydrolysis, controlled by guanine nucleotide exchange factors and GTPase-activating proteins (GAPs), as essential features of their actions in cells. Within the Ras superfamily, the Arf family is composed of 30 members, including 22 Arf-like (Arl) proteins. The ELMO domain has been proposed to be a GAP domain for ARL2 and other members of the Arf family [].; GO: 0006909 phagocytosis, 0005856 cytoskeleton
Probab=100.00 E-value=4e-50 Score=335.16 Aligned_cols=168 Identities=41% Similarity=0.773 Sum_probs=151.4
Q ss_pred HHHHHHHhhccccCCCCHHHHHHHHHHHHHhCCCcccCCCCchhhhhhccCCCCCCCCccchhhhhHhhHHHHHhhChHH
Q 026332 43 RLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTS 122 (240)
Q Consensus 43 ~L~~l~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk~lGFQ~~dP~tDFRg~G~LgL~~LlyF~~~~~~~ 122 (240)
.|+.|++++++|||++|++|+++|++||++++++.+.+++.+++|++|||||+||+|||||+|+|||+||+||+++||+.
T Consensus 2 ~l~~l~~~~~~~~d~~~~~h~~~L~~Lw~~~~~~~~~~~~~~~~W~~lGFQ~~dP~tDFR~~G~LgL~~L~yf~~~~~~~ 81 (170)
T PF04727_consen 2 TLNLLRALAKTPFDPENPEHEELLQELWNALFPDEPPFSRISEHWKELGFQGEDPATDFRGMGLLGLDCLLYFAENYPDE 81 (170)
T ss_pred hHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCCccCCcCccHHHHhCCCCCCcHHHHhhhhHHHHHHHHHHHHHChHH
Confidence 57889999999999999999999999999999988888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHhhhhcCCCCcchhhhhhhc-ccCchhhHHHHHHHHHHHHHHHHHhCC
Q 026332 123 FQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQM-LSDNEWAFDLLYCVAFVVMDKQWLERN 201 (240)
Q Consensus 123 ~~~ll~~q~~~~~~~~yPfA~~sIniT~~L~~~L~~~~~~~~~~~~~~f~~l-l~~~~~~F~ely~~~f~~f~~~W~~~~ 201 (240)
+++++.++.++.+..+||||+||||||.+|+++|+.+..... ....+... +++.+.+|++|||++|+.|+++|++++
T Consensus 82 ~~~~l~~~~~~~~~~~~Pfa~~~invt~~l~~~l~~~~~~~~--~~~~~~~~~~~~~~~~f~elf~~~f~~f~~~W~~~~ 159 (170)
T PF04727_consen 82 FRRILREQSSRSDENWYPFAVASINVTSLLCELLKLGALDSE--FYKRINFLSFFSSLEAFEELFCACFQLFDRTWKEMN 159 (170)
T ss_pred HHHHHHHccCcccccccHHHHHHHHHHHHHHHHHhhcccCHH--HhhcccccccCccHHHHHHHHHHHHHHHHHHHccCC
Confidence 999999998776668999999999999999999999764321 22222222 567789999999999999999999999
Q ss_pred CChhhHHHHHH
Q 026332 202 ATYMEFNDVLK 212 (240)
Q Consensus 202 at~~dF~~V~~ 212 (240)
+|+|||++|++
T Consensus 160 at~~dF~~V~~ 170 (170)
T PF04727_consen 160 ATIMDFNKVLK 170 (170)
T ss_pred CCHHHHHhhcC
Confidence 99999999975
No 3
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-34 Score=272.61 Aligned_cols=198 Identities=23% Similarity=0.468 Sum_probs=183.3
Q ss_pred cccCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHhCCCccc-----------CCCCchhhhhhccCC-CCCCCC
Q 026332 33 CINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQEL-----------HGLISDQWKEMGWQG-KDPSTD 100 (240)
Q Consensus 33 ~~~L~~~Q~~~L~~l~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~-----------~~~~~~~Wk~lGFQ~-~dP~tD 100 (240)
.++|+.+|...+..+..|+.++.|+.+++.++.++.+-..+|..+.- .....+..|++||.+ .||+.|
T Consensus 275 ~~~lyvlq~L~~glle~Rm~~~md~~~q~qr~~i~~lr~iaf~~~~~~~~~g~~~e~rk~l~~~~ykklgf~n~~npa~d 354 (713)
T KOG2999|consen 275 PIQLYVLQVLTLGLLEVRMRTKMDPQDQVQRELISELRRIAFDDESEPSRRGGGAEVRKILDIESYKKLGFENRINPAQD 354 (713)
T ss_pred hHHHHHHHHHHHhhhHHhhhcccchhhHHHHHHHHHHHhcCcccccccccCCcchhhhhhhhHHHHHhhcccccCChHHh
Confidence 35899999999999999999999999999999999999999976432 235578999999999 999999
Q ss_pred cc--chhhhhHhhHHHHHhhChHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHhhhhcCCCCcchhhhhhhcccCc
Q 026332 101 FR--GAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDN 178 (240)
Q Consensus 101 FR--g~G~LgL~~LlyF~~~~~~~~~~ll~~q~~~~~~~~yPfA~~sIniT~~L~~~L~~~~~~~~~~~~~~f~~ll~~~ 178 (240)
|- .+|+|+|+||+||+++||+.+.+++.++++|.+.++|||+..+|.+|++||++|+.+. ++++...+|.|+||.+
T Consensus 355 f~etppG~LAldnMvyFA~~~~~~y~riVlENSsRedkhecpfgr~sieltk~lcEilrVge--~p~E~~~df~pmfFth 432 (713)
T KOG2999|consen 355 FGETPPGRLALDNMVYFARNSPQDYRRIVLENSSREDKHECPFGRMSIELTKILCELLRVGE--PPDELDRDFIPMFFTH 432 (713)
T ss_pred cccCCchHHHHHHHHHHHHhCHHHHHHHHHhcccccccCcCCcCccHHHHHHHHHHHHhcCC--CchhhcCccceeeecC
Confidence 98 7899999999999999999999999999999999999999999999999999999986 4566777899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 026332 179 EWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLERELLMDDVLQIEEM 233 (240)
Q Consensus 179 ~~~F~ely~~~f~~f~~~W~~~~at~~dF~~V~~~~r~ql~~~L~~~~~~~v~d~ 233 (240)
+..|+|+||+|.++|+++|++|+||..||++|+.+||+||.|+|..+ ++++++.
T Consensus 433 d~~Fee~FciciqLlnkTWKEMrAt~edf~KVmqVVrEQl~r~L~~k-p~sld~f 486 (713)
T KOG2999|consen 433 DTPFEELFCICVQLLNRTWKEMRATAEDFEKVMQVVREQLRRALKRK-PQSLDQF 486 (713)
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHHhccC-CccHHHH
Confidence 99999999999999999999999999999999999999999999986 8777764
No 4
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=39.66 E-value=43 Score=31.17 Aligned_cols=87 Identities=25% Similarity=0.405 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHhCCCcccCCCCchhhh-------------hhccCCCCCCCCcc
Q 026332 36 LTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWK-------------EMGWQGKDPSTDFR 102 (240)
Q Consensus 36 L~~~Q~~~L~~l~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk-------------~lGFQ~~dP~tDFR 102 (240)
-...++++++.-.++.+..|+-++++-+.+..-+-+ ..|. ..+.+|+ .|||-.+.|+||--
T Consensus 34 ~E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~-s~ph-----~ag~qWkF~GaFYFa~TVItTIGyGhstP~T~~G 107 (350)
T KOG4404|consen 34 NEARERERLERRLANLKRKYNLSEEDYRELERVILK-SEPH-----KAGPQWKFAGAFYFATTVITTIGYGHSTPSTDGG 107 (350)
T ss_pred chHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHh-cCcc-----ccccccccCcceEEEEEEEeeeccCCCCCCCcCc
Confidence 345677888888888999999888776665554443 3332 4577887 58999999999965
Q ss_pred c-----hhhhhHh-hHHH---HHhhChHHHHHHHH
Q 026332 103 G-----AGFISLE-NLLF---FAKTFSTSFQRLLR 128 (240)
Q Consensus 103 g-----~G~LgL~-~Lly---F~~~~~~~~~~ll~ 128 (240)
. -|++|.- .|+. |.|+-......+++
T Consensus 108 K~Fcm~Yal~Gipl~lvmFqs~gERlnt~~ayil~ 142 (350)
T KOG4404|consen 108 KAFCMFYALVGIPLTLVMFQSIGERLNTFVAYILR 142 (350)
T ss_pred eehhhhHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2555443 3333 44555555544444
No 5
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=37.72 E-value=13 Score=16.71 Aligned_cols=6 Identities=50% Similarity=1.248 Sum_probs=4.6
Q ss_pred hhccCC
Q 026332 89 EMGWQG 94 (240)
Q Consensus 89 ~lGFQ~ 94 (240)
.+||||
T Consensus 3 smgf~g 8 (10)
T PF08262_consen 3 SMGFHG 8 (10)
T ss_pred cccccc
Confidence 478987
No 6
>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin. Its interaction with BRCA2 suggests that it may play a central role in the DNA repair function of BRCA2 []. ; PDB: 1UZ3_B 1UTU_B 2FMM_E.
Probab=33.66 E-value=68 Score=23.19 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=23.0
Q ss_pred cCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHH
Q 026332 35 NLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALW 70 (240)
Q Consensus 35 ~L~~~Q~~~L~~l~~~~~~~~d~~~~~H~~~L~~Lw 70 (240)
+|+..|+..|..|++..+++ |.+|...|..+-
T Consensus 25 ~lsweke~lLt~Lr~~L~IS----~e~H~~~l~~~~ 56 (73)
T PF03735_consen 25 PLSWEKEKLLTELRKELNIS----DEEHREELRRAV 56 (73)
T ss_dssp S--HHHHHHHHHHHHHTT------HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHh
Confidence 38999999999998877664 778888887763
No 7
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=33.33 E-value=3.3e+02 Score=27.29 Aligned_cols=87 Identities=17% Similarity=0.175 Sum_probs=47.4
Q ss_pred HHHHHHhhccccC---CCCHHHHHHHHHHHHHhCCCcccCCCCchhhhhhccCCCCCCCCccchhhhhHh-hHHHHHhhC
Q 026332 44 LRRLKHRMKVYFD---ASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLE-NLLFFAKTF 119 (240)
Q Consensus 44 L~~l~~~~~~~~d---~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk~lGFQ~~dP~tDFRg~G~LgL~-~LlyF~~~~ 119 (240)
...++++++.||. .+|+.|.....+.-..++.+.+. ..|| |++. ||.++++..
T Consensus 335 ~~~~kr~in~~~~qis~~~~q~L~qI~dkl~s~~~~~~~--------------~~~p---------l~~~~~~~~iaka~ 391 (591)
T KOG2412|consen 335 NQSLKRAINPPFSQISKSNGQVLRQIFDKLDSLFGGIPD--------------IVDP---------LAYDWCLNFIAKAF 391 (591)
T ss_pred HHHHHhhcCCChhhhhhccHHHHHHHHHHHHHHhcCCCC--------------CCCc---------hhHHHHHHHHHHHH
Confidence 3456667777774 34555443333333333333221 4455 4443 888888775
Q ss_pred hHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHhh
Q 026332 120 STSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLD 157 (240)
Q Consensus 120 ~~~~~~ll~~q~~~~~~~~yPfA~~sIniT~~L~~~L~ 157 (240)
-.....-+.. .++.-||+|.+.+-|-...-++-+
T Consensus 392 V~Q~Etev~~----~PeaAfPla~V~l~i~~q~Pdv~d 425 (591)
T KOG2412|consen 392 VKQAETEVAS----KPEAAFPLAKVILYIWSQFPDVGD 425 (591)
T ss_pred HHHHHHHHHh----CCcccchHHHHHHHHHHhCchHHH
Confidence 4433332322 344569999998887666554444
No 8
>PF11588 DUF3243: Protein of unknown function (DUF3243); InterPro: IPR021637 This family of proteins with unknown function includes uncharacterised proteins ymfJ and yflH. The family appears to be restricted to Firmicutes.; PDB: 3D0W_B.
Probab=27.17 E-value=41 Score=24.90 Aligned_cols=28 Identities=18% Similarity=0.429 Sum_probs=15.6
Q ss_pred HHhhccccCCCCHHHHHHHHHHHHHhCCC
Q 026332 48 KHRMKVYFDASRPDHQEALRALWAATYPD 76 (240)
Q Consensus 48 ~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~ 76 (240)
-+.+.-.+||.|+ .+++|++||+.+.++
T Consensus 39 GdyLA~~vdP~N~-EerlLkELW~va~e~ 66 (81)
T PF11588_consen 39 GDYLAKNVDPKNP-EERLLKELWDVADEE 66 (81)
T ss_dssp HHHHHT-----SH-HHHHHHHHHHC--HH
T ss_pred HHHHHhcCCCCCH-HHHHHHHHHHhCCHH
Confidence 3345668899997 479999999987543
No 9
>PHA02819 hypothetical protein; Provisional
Probab=25.74 E-value=1.2e+02 Score=21.81 Aligned_cols=32 Identities=25% Similarity=0.463 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHH
Q 026332 183 DLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLER 220 (240)
Q Consensus 183 ~ely~~~f~~f~~~W~~~~at~~dF~~V~~~~r~ql~~ 220 (240)
++||+++|=.| |..+-.||+..++.+|+-+..
T Consensus 2 DKLYaaiFGvF------msS~DdDFnnFI~VVksVLtd 33 (71)
T PHA02819 2 DKLYSAIFGVF------MSSSDDDFNNFINVVKSVLNN 33 (71)
T ss_pred hhHHHHHHHhh------hCCchhHHHHHHHHHHHHHcC
Confidence 57888888887 556777999999998887764
No 10
>PF11159 DUF2939: Protein of unknown function (DUF2939); InterPro: IPR021330 This bacterial family of proteins has no known function.
Probab=25.38 E-value=76 Score=23.49 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=20.8
Q ss_pred ChhhHHHHHHHHHHHHHHhhccCC
Q 026332 203 TYMEFNDVLKSTRAQLERELLMDD 226 (240)
Q Consensus 203 t~~dF~~V~~~~r~ql~~~L~~~~ 226 (240)
.+.||+.|...++.|+...+..+.
T Consensus 34 ~~VD~~avr~slk~ql~~~~~~~~ 57 (95)
T PF11159_consen 34 RYVDFPAVRASLKDQLNAELVSRI 57 (95)
T ss_pred HHcCHHHHHHHHHHHHHHHHHhhc
Confidence 478999999999999999987644
No 11
>PHA02650 hypothetical protein; Provisional
Probab=22.01 E-value=1.5e+02 Score=21.88 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHH
Q 026332 183 DLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLER 220 (240)
Q Consensus 183 ~ely~~~f~~f~~~W~~~~at~~dF~~V~~~~r~ql~~ 220 (240)
++||+++|=.| |..+-.||+..++.+|+-|..
T Consensus 2 DKLYaaiFGVF------msS~DdDFnnFI~VVkSVLtD 33 (81)
T PHA02650 2 DKLYAAIFGVF------MSSTDDDFNNFIDVVKSVLSD 33 (81)
T ss_pred hhHHHHHHhhh------cCCcHHHHHHHHHHHHHHHcC
Confidence 57888888887 556777999999988877654
No 12
>PHA02844 putative transmembrane protein; Provisional
Probab=21.79 E-value=1.5e+02 Score=21.57 Aligned_cols=33 Identities=24% Similarity=0.458 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHh
Q 026332 183 DLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLERE 221 (240)
Q Consensus 183 ~ely~~~f~~f~~~W~~~~at~~dF~~V~~~~r~ql~~~ 221 (240)
++||+++|=.| |..+-.||+..++.+|+-|...
T Consensus 2 DKLYaaiFGVF------msS~DdDFnnFI~vVksVLtd~ 34 (75)
T PHA02844 2 DKLYTAIFGVF------LSSENEDFNNFIDVVKSVLSDD 34 (75)
T ss_pred hhHHHHHHhhh------cCCchHHHHHHHHHHHHHHcCC
Confidence 57888888877 5567779999998888776543
No 13
>PHA02975 hypothetical protein; Provisional
Probab=21.69 E-value=1.6e+02 Score=21.10 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHH
Q 026332 183 DLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLER 220 (240)
Q Consensus 183 ~ely~~~f~~f~~~W~~~~at~~dF~~V~~~~r~ql~~ 220 (240)
++||+++|=.| |..+-.||+..++.+|+-+..
T Consensus 2 dKLYaaiFGvF------msS~DdDF~nFI~vVksVLtd 33 (69)
T PHA02975 2 EKLFTGTYGVF------LESNDSDFEDFIDTIMHVLTG 33 (69)
T ss_pred hhHHHHHHHhh------cCCChHHHHHHHHHHHHHHcC
Confidence 56888888877 456777999998888876653
No 14
>COG2732 Barstar, RNAse (barnase) inhibitor [Transcription]
Probab=20.97 E-value=48 Score=24.96 Aligned_cols=50 Identities=20% Similarity=0.269 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHhCCCcccCCCCchhhhhhccCC
Q 026332 38 PQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQG 94 (240)
Q Consensus 38 ~~Q~~~L~~l~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk~lGFQ~ 94 (240)
+.|...-+.+.+..+.| ..-.+-|..||.++++...+| ..-.|+..||..
T Consensus 12 ~~q~~fhr~~sq~f~l~-----~yyg~nLDaLWD~ltg~v~lP--l~iv~k~f~~sk 61 (91)
T COG2732 12 EDQEDFHRDFSQTFGLA-----DYYGRNLDALWDVLTGDVLLP--LEIVFKHFGFSK 61 (91)
T ss_pred cchHHHHHHHHHHcCCh-----HHhcccHHHHHHHHhccccCc--eEEEEeccchhh
Confidence 34444444554444444 123567999999999876654 567899999875
Done!