Query 026332
Match_columns 240
No_of_seqs 148 out of 387
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 11:04:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026332.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026332hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uz3_A EMSY protein; chromatin 38.0 36 0.0012 25.2 4.0 31 35-69 42-72 (102)
2 3o39_A Periplasmic protein rel 31.6 72 0.0025 23.6 4.8 36 34-69 16-51 (108)
3 2fmm_E Protein EMSY; ENT domai 29.6 57 0.0019 25.3 4.0 53 35-91 34-90 (133)
4 3d0w_A YFLH protein; GRAM-posi 25.5 39 0.0013 25.1 2.3 28 48-76 61-88 (104)
5 2k19_A Putative piscicolin 126 16.2 1E+02 0.0035 22.6 2.9 22 34-55 75-96 (98)
6 3itf_A Periplasmic adaptor pro 13.9 1.8E+02 0.0062 22.5 4.0 38 33-70 43-80 (145)
7 1xkp_A Putative membrane-bound 13.9 1.1E+02 0.0036 26.0 2.8 115 92-226 96-216 (246)
8 2zrr_A Mundticin KS immunity p 13.4 98 0.0033 23.4 2.2 23 33-55 94-116 (118)
9 2lhu_A Mybpc3 protein; cardiac 12.9 49 0.0017 25.3 0.3 29 68-104 83-111 (124)
10 4hpq_B ATG29, KLTH0D11660P; au 11.7 73 0.0025 25.3 1.0 48 82-129 87-144 (159)
No 1
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A
Probab=38.02 E-value=36 Score=25.20 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=25.2
Q ss_pred cCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHH
Q 026332 35 NLTPQQAERLRRLKHRMKVYFDASRPDHQEALRAL 69 (240)
Q Consensus 35 ~L~~~Q~~~L~~l~~~~~~~~d~~~~~H~~~L~~L 69 (240)
+|+..|+..|..|++..++ +|.+|...|..+
T Consensus 42 ~Lsweke~LLt~LR~~L~I----S~eeH~~elrr~ 72 (102)
T 1uz3_A 42 DLTKEKKDLLGELSKVLSI----STERHRAEVRRA 72 (102)
T ss_dssp SCCHHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCC----CcHHHHHHHHHh
Confidence 4899999999999876655 588898887765
No 2
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=31.57 E-value=72 Score=23.60 Aligned_cols=36 Identities=17% Similarity=0.332 Sum_probs=26.4
Q ss_pred ccCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHH
Q 026332 34 INLTPQQAERLRRLKHRMKVYFDASRPDHQEALRAL 69 (240)
Q Consensus 34 ~~L~~~Q~~~L~~l~~~~~~~~d~~~~~H~~~L~~L 69 (240)
.+||..|+..++.|.+..+...+....+-.+.|..|
T Consensus 16 L~LTd~Qk~qir~L~~~~r~~~~~~~~~~r~~m~~L 51 (108)
T 3o39_A 16 LNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDI 51 (108)
T ss_dssp SCCCHHHHHHHHHHHHTTTTSCCCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 789999999999999888777665554444444433
No 3
>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1
Probab=29.59 E-value=57 Score=25.28 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=35.1
Q ss_pred cCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHhCC---Ccc-cCCCCchhhhhhc
Q 026332 35 NLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYP---DQE-LHGLISDQWKEMG 91 (240)
Q Consensus 35 ~L~~~Q~~~L~~l~~~~~~~~d~~~~~H~~~L~~Lw~~~~~---~~~-~~~~~~~~Wk~lG 91 (240)
+|+..|+..|..|++..+| +|.+|...|+++-+.-.- .+. ..+..+.+|..-|
T Consensus 34 ~LSweke~LLt~LR~~L~I----S~eeH~~elrr~~sDe~l~~I~~~~~g~~s~~~W~~eg 90 (133)
T 2fmm_E 34 DLTKEKKDLLGELSKVLSI----STERHRAEVRRAVNDERLTTIAHNMSGPNSSSEWSIEG 90 (133)
T ss_dssp SCCHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHCHHHHHHHHHHHCSCCSHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCC----CcHHHHHHHHHhhhHHHHHHHHHhhcCCcchHHHHHcc
Confidence 4899999999999877665 588898887766432100 000 1224678998887
No 4
>3d0w_A YFLH protein; GRAM-positive bacterium, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Bacillus subtilis}
Probab=25.48 E-value=39 Score=25.12 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=21.6
Q ss_pred HHhhccccCCCCHHHHHHHHHHHHHhCCC
Q 026332 48 KHRMKVYFDASRPDHQEALRALWAATYPD 76 (240)
Q Consensus 48 ~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~ 76 (240)
-..+--.+||.|+ .+++|++||+.+..+
T Consensus 61 GdyLA~~vdP~N~-EerlLkELW~Va~ee 88 (104)
T 3d0w_A 61 GDYLAKHEEPQNG-EEMLLQELWSVADED 88 (104)
T ss_dssp HHHHHTCCCCCSH-HHHHHHHHHHHCCHH
T ss_pred HHHHHHcCCCCCH-HHHHHHHHHHhCCHH
Confidence 3345678899997 479999999987653
No 5
>2k19_A Putative piscicolin 126 immunity protein; PISI, bacteriocin, immune system, antimicrobial protein; NMR {Carnobacterium maltaromaticum}
Probab=16.25 E-value=1e+02 Score=22.57 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=18.8
Q ss_pred ccCCHHHHHHHHHHHHhhcccc
Q 026332 34 INLTPQQAERLRRLKHRMKVYF 55 (240)
Q Consensus 34 ~~L~~~Q~~~L~~l~~~~~~~~ 55 (240)
..||+.|+..|..|++..++-|
T Consensus 75 i~Ls~~qs~~lK~Lr~Ls~IRY 96 (98)
T 2k19_A 75 VTLSDYQSKKLKELTSISNIRY 96 (98)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCT
T ss_pred cccCHHHHHHHHHHHHHHhhhc
Confidence 5789999999999998887765
No 6
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=13.89 E-value=1.8e+02 Score=22.50 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=26.2
Q ss_pred cccCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHH
Q 026332 33 CINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALW 70 (240)
Q Consensus 33 ~~~L~~~Q~~~L~~l~~~~~~~~d~~~~~H~~~L~~Lw 70 (240)
..+||+.|+..++.|.+..+.....-+.+..+.|..|.
T Consensus 43 ~L~LTdeQkqqir~L~~~~r~~~~~~~~~~r~~l~~Li 80 (145)
T 3itf_A 43 GISLTEHQRQQMRDLMQQARHEQPPVNVSELETMHRLV 80 (145)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHH
Confidence 37899999999999987766554444545555555443
No 7
>1xkp_A Putative membrane-bound YOP targeting protein YOP; YOPN, type III secretion, SYCN, membrane PR chaperon complex; HET: MLY; 1.70A {Yersinia pestis} SCOP: a.243.1.3 PDB: 1xl3_A*
Probab=13.85 E-value=1.1e+02 Score=26.01 Aligned_cols=115 Identities=13% Similarity=0.033 Sum_probs=58.2
Q ss_pred cCCCCCCCCccchhhhhHhhHHHHHhhChHH---HHHH---HHHhCCCCCCCCCchHHHHHHHHHHHHHHhhhhcCCCCc
Q 026332 92 WQGKDPSTDFRGAGFISLENLLFFAKTFSTS---FQRL---LRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRT 165 (240)
Q Consensus 92 FQ~~dP~tDFRg~G~LgL~~LlyF~~~~~~~---~~~l---l~~q~~~~~~~~yPfA~~sIniT~~L~~~L~~~~~~~~~ 165 (240)
+...||+. =+++|..|+-.....|+. ...+ +.+. ..+.+ |-..+||||+.-+-.+-+.....+ .
T Consensus 96 ~f~~DpSd-----~~laL~~ll~~~~~~p~~~~l~~~l~~aL~~l---~q~~g-~~i~AGiNia~aa~~f~~~~~~s~-~ 165 (246)
T 1xkp_A 96 GXSEEPSE-----QFXMLCGLRDALXGRPELAHLSHLVEQALVSM---AEEQG-ETIVLGARITPEAYRESQSGVNPL-Q 165 (246)
T ss_dssp HHCSCHHH-----HHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHHHHHTTSSCCH-H
T ss_pred ccCCChHH-----HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH---HHhcC-hhhhhhhhHHHHHHHHhhcccCCH-H
Confidence 33456742 367888888776677732 1222 2211 11223 899999999876665543222111 1
Q ss_pred chhhhhhhcccCchhhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhccCC
Q 026332 166 FVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLERELLMDD 226 (240)
Q Consensus 166 ~~~~~f~~ll~~~~~~F~ely~~~f~~f~~~W~~~~at~~dF~~V~~~~r~ql~~~L~~~~ 226 (240)
..+..|+.++. ++ .....+...|.++= .+-+|..|+..+.+-|..-|...+
T Consensus 166 ~LR~lYr~~v~-~~--------~s~~~~~~~~~~~y-g~~~~~~vl~fL~~AL~~DL~S~~ 216 (246)
T 1xkp_A 166 PLRDTYRDAVM-GY--------QGIYAIWSDLQXRF-PNGDIDSVILFLQXALSADLQSQQ 216 (246)
T ss_dssp HHHHHHHHHHH-CC--------CCHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHh-cc--------ccHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHhhcC
Confidence 22333333321 11 11223445565532 344677777777666666555443
No 8
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=13.45 E-value=98 Score=23.45 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=16.7
Q ss_pred cccCCHHHHHHHHHHHHhhcccc
Q 026332 33 CINLTPQQAERLRRLKHRMKVYF 55 (240)
Q Consensus 33 ~~~L~~~Q~~~L~~l~~~~~~~~ 55 (240)
...||+.|++.|+.|++..++-|
T Consensus 94 ~I~LS~~qs~~LK~Lr~LSnIRY 116 (118)
T 2zrr_A 94 GVSLNENQSKKLKELMSISNIRY 116 (118)
T ss_dssp TCCCCHHHHHHHHHHHTTC----
T ss_pred CcccCHHHHHHHHHHHHHHhhhc
Confidence 36789999999999998887754
No 9
>2lhu_A Mybpc3 protein; cardiac, structural protein; NMR {Mus musculus}
Probab=12.89 E-value=49 Score=25.28 Aligned_cols=29 Identities=21% Similarity=0.512 Sum_probs=22.3
Q ss_pred HHHHHhCCCcccCCCCchhhhhhccCCCCCCCCccch
Q 026332 68 ALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGA 104 (240)
Q Consensus 68 ~Lw~~~~~~~~~~~~~~~~Wk~lGFQ~~dP~tDFRg~ 104 (240)
++|..+.... ....+.|=||- =.|||||+
T Consensus 83 dvWElL~~A~------pkdYEkIAf~Y--GITDlRGM 111 (124)
T 2lhu_A 83 DVWEILRQAP------PSEYERIAFQH--GVTDLRGM 111 (124)
T ss_dssp CHHHHHTTSC------GGGHHHHHHHT--TCCCHHHH
T ss_pred HHHHHHccCC------cchHHHHHHHh--CcHHHHHH
Confidence 7888886532 36788888887 69999986
No 10
>4hpq_B ATG29, KLTH0D11660P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=11.67 E-value=73 Score=25.30 Aligned_cols=48 Identities=29% Similarity=0.453 Sum_probs=36.8
Q ss_pred CCchhhhhhccCCCCC----------CCCccchhhhhHhhHHHHHhhChHHHHHHHHH
Q 026332 82 LISDQWKEMGWQGKDP----------STDFRGAGFISLENLLFFAKTFSTSFQRLLRK 129 (240)
Q Consensus 82 ~~~~~Wk~lGFQ~~dP----------~tDFRg~G~LgL~~LlyF~~~~~~~~~~ll~~ 129 (240)
++|++|+.+||....+ -.|++-.|-++|..|+..-+...+..+.|...
T Consensus 87 LISD~yelL~y~~~~dndIeL~VlSqF~d~~~~~dl~Ld~Li~LY~~QNeQLq~l~d~ 144 (159)
T 4hpq_B 87 MISDQFKQVGYEVRDGNEVCIDAMSRFETPRQLGNLPLEKLVQLYKLQNDQLHSLFNT 144 (159)
T ss_dssp EEESSCEECCCEEETTTEEEEEEECCCCCCTTTTSSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred EeechhhhhccccCCCCcEEEeehhhCccccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999996433 23446789999999999887777777766543
Done!