Query 026332
Match_columns 240
No_of_seqs 148 out of 387
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 11:05:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026332.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026332hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uz3a1 a.283.1.1 (A:13-102) E 29.6 30 0.0022 23.4 4.0 31 35-69 30-60 (90)
2 d1ya0a1 a.118.8.1 (A:1-497) SM 18.8 2.2E+02 0.016 23.4 8.8 71 139-225 217-287 (497)
3 d2c1wa1 d.294.1.1 (A:6-289) En 17.0 1E+02 0.0074 24.7 5.7 55 57-116 125-179 (284)
4 d1w36b1 c.37.1.19 (B:1-485) Ex 12.1 30 0.0022 28.3 0.9 39 57-97 388-427 (485)
5 d1wpba_ a.233.1.1 (A:) Hypothe 10.5 1.3E+02 0.0097 22.1 4.2 43 31-74 2-44 (168)
6 d1x63a2 g.39.1.3 (A:45-76) Fou 10.0 25 0.0018 18.7 -0.3 18 4-21 5-24 (32)
7 d2ifta1 c.66.1.46 (A:11-193) P 8.3 55 0.004 23.8 1.1 28 101-129 51-84 (183)
8 d1dxea_ c.1.12.5 (A:) 2-dehydr 7.5 1E+02 0.0074 23.9 2.5 52 49-100 179-236 (253)
9 d1olma1 a.5.3.1 (A:1-75) Super 6.4 2E+02 0.015 17.4 3.1 20 34-53 6-25 (75)
10 d1knza_ e.34.1.1 (A:) NSP3 hom 5.6 4.8E+02 0.035 18.4 6.3 43 181-224 8-50 (157)
No 1
>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.61 E-value=30 Score=23.35 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=24.8
Q ss_pred cCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHH
Q 026332 35 NLTPQQAERLRRLKHRMKVYFDASRPDHQEALRAL 69 (240)
Q Consensus 35 ~L~~~Q~~~L~~l~~~~~~~~d~~~~~H~~~L~~L 69 (240)
+|+..|+..|..|++..+ .+|.+|...|.++
T Consensus 30 ~lsweke~lLt~LR~~L~----IS~eeHr~elrr~ 60 (90)
T d1uz3a1 30 DLTKEKKDLLGELSKVLS----ISTERHRAEVRRA 60 (90)
T ss_dssp SCCHHHHHHHHHHHHHTT----CCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHh
Confidence 489999999999886655 4588898877765
No 2
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.82 E-value=2.2e+02 Score=23.37 Aligned_cols=71 Identities=17% Similarity=0.254 Sum_probs=39.2
Q ss_pred CchHHHHHHHHHHHHHHhhhhcCCCCcchhhhhhhcccCchhhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHH
Q 026332 139 YPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQL 218 (240)
Q Consensus 139 yPfA~~sIniT~~L~~~L~~~~~~~~~~~~~~f~~ll~~~~~~F~ely~~~f~~f~~~W~~~~at~~dF~~V~~~~r~ql 218 (240)
=||..|--|+..++-...+.............|. ..|-.+++..|. +.+..+|.++.+.+.+++
T Consensus 217 ~~~~~a~~nL~~~~~~~~~~~~~~~~~~~~~~~~-------~~f~~~~~~l~~---------~~~~~~~~~~~~~~~~~l 280 (497)
T d1ya0a1 217 FPFPAASTNLQKALSKALESRDEVKTKWGVSDFI-------KAFIKFHGHVYL---------SKSLEKLSPLREKLEEQF 280 (497)
T ss_dssp BCCHHHHHHHHHHHHHHTTSCCCCCSSCCHHHHH-------HHHHHHHHHHHH---------TCCGGGHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhhhhhhccccccchHH-------HHHHHHHHHHHh---------CCchhhHHHHHHHHHHHH
Confidence 3677777777766665554332211111111111 234444433322 566788999998888888
Q ss_pred HHhhccC
Q 026332 219 ERELLMD 225 (240)
Q Consensus 219 ~~~L~~~ 225 (240)
...+...
T Consensus 281 ~~~l~~~ 287 (497)
T d1ya0a1 281 KELLFQK 287 (497)
T ss_dssp HHHHHTT
T ss_pred HHHHhcC
Confidence 8777654
No 3
>d2c1wa1 d.294.1.1 (A:6-289) EndoU {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=17.01 E-value=1e+02 Score=24.73 Aligned_cols=55 Identities=22% Similarity=0.355 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccCCCCchhhhhhccCCCCCCCCccchhhhhHhhHHHHH
Q 026332 57 ASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFA 116 (240)
Q Consensus 57 ~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk~lGFQ~~dP~tDFRg~G~LgL~~LlyF~ 116 (240)
.+..+..+.|..||=..+....-....+.-++.+ |-|+. -||.+|.|+.|-++|.
T Consensus 125 ~s~~~Fk~~L~~lWF~~Y~R~~g~~~dSSgFEHV-FvGE~----k~g~~V~G~HNWi~fy 179 (284)
T d2c1wa1 125 PTRNDFKVQLYNIWFQLYSRAPGSRPDSCGFEHV-FVGES----KRGQEMMGLHNWVQFY 179 (284)
T ss_dssp SSHHHHHHHHHHHHHSCBCC--CCCCCBCHHHHH-TTSCS----SSSCSCCCCCCHHHHH
T ss_pred CCHHHHHHHHHHhcccCcccCCCCCCCCCCcceE-eeccc----cCCCcccceehHHHHH
Confidence 4456789999999998876542223456677777 77752 2577899999999987
No 4
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=12.06 E-value=30 Score=28.27 Aligned_cols=39 Identities=26% Similarity=0.575 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccCCCCchhhhhh-ccCCCCC
Q 026332 57 ASRPDHQEALRALWAATYPDQELHGLISDQWKEM-GWQGKDP 97 (240)
Q Consensus 57 ~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk~l-GFQ~~dP 97 (240)
.+|+.+.++|+.||... +...+ -.+|+.|..| ||+|.||
T Consensus 388 Dts~~Q~~ll~~L~~~~-~~~~l-~~VGD~kQSIY~FRgad~ 427 (485)
T d1w36b1 388 DTDPQQYRIFRRIWHHQ-PETAL-LLIGDPKQAIYAFRGADI 427 (485)
T ss_dssp GCCHHHHHHHHHHHTTC-TTCEE-EEEECGGGCCCGGGTCCH
T ss_pred cCCHHHHHHHHHHHhCC-CCCeE-EEEecCcchhccccCCCH
Confidence 46888999999998642 11111 1368899977 9999987
No 5
>d1wpba_ a.233.1.1 (A:) Hypothetical protein YfbU {Escherichia coli [TaxId: 562]}
Probab=10.54 E-value=1.3e+02 Score=22.06 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=32.9
Q ss_pred cccccCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHhC
Q 026332 31 RICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATY 74 (240)
Q Consensus 31 ~~~~~L~~~Q~~~L~~l~~~~~~~~d~~~~~H~~~L~~Lw~~~~ 74 (240)
++.+.+|..|+..|....+.+. ..||+|.++-+.++++-...+
T Consensus 2 e~~M~lt~~eRLiL~nq~~il~-~L~pena~~y~r~~~ive~Gy 44 (168)
T d1wpba_ 2 ESTMEMTNAQRLILSNQYKMMT-MLDPANAERYRRLQTIIERGY 44 (168)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHH-HHCGGGHHHHHHHHHHHHHTC
T ss_pred CcccccCHHHHHHHHHHHHHHH-hhCccccccHHHHHHHHHcCc
Confidence 4568899999999988766655 558999888777777766543
No 6
>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.02 E-value=25 Score=18.73 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=12.3
Q ss_pred cccccccchhhhc--ccccc
Q 026332 4 DDATCGTPTWIGK--GLTCV 21 (240)
Q Consensus 4 ~~~~~~~~~~~~~--~l~~~ 21 (240)
..-++|++|++-+ .++|+
T Consensus 5 ckq~igsgsffpkg~d~ycv 24 (32)
T d1x63a2 5 CKQVIGTGSFFPKGEDFYCV 24 (32)
T ss_dssp SCCCCTTSCEEEETTEEEEH
T ss_pred hhhhcccccccCCCCcEEEE
Confidence 4568899999744 45665
No 7
>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}
Probab=8.28 E-value=55 Score=23.84 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=22.0
Q ss_pred ccchhhhhHhhH------HHHHhhChHHHHHHHHH
Q 026332 101 FRGAGFISLENL------LFFAKTFSTSFQRLLRK 129 (240)
Q Consensus 101 FRg~G~LgL~~L------lyF~~~~~~~~~~ll~~ 129 (240)
|-|+|.+|+++| ++|+++.+..++ ++.+
T Consensus 51 FaGsG~~glEalSRGA~~v~fVE~~~~a~~-~ik~ 84 (183)
T d2ifta1 51 FAGSGSLGFEALSRQAKKVTFLELDKTVAN-QLKK 84 (183)
T ss_dssp TCTTCHHHHHHHHTTCSEEEEECSCHHHHH-HHHH
T ss_pred ccCccceeeeeeeecceeeEEeecccchhh-hHhh
Confidence 789999999999 558888887764 4444
No 8
>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]}
Probab=7.53 E-value=1e+02 Score=23.91 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=35.8
Q ss_pred HhhccccCCCCHHHHHHHHHHHHHhCCCc-cc-----CCCCchhhhhhccCCCCCCCC
Q 026332 49 HRMKVYFDASRPDHQEALRALWAATYPDQ-EL-----HGLISDQWKEMGWQGKDPSTD 100 (240)
Q Consensus 49 ~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~-~~-----~~~~~~~Wk~lGFQ~~dP~tD 100 (240)
.-++.|-+.++|++.+++.++-+.+.... +. .....++|.+.||+--.-.+|
T Consensus 179 ~slG~~g~~~~p~v~~ai~~v~~~~~~~gk~~g~~~~~~~~~~~~~~~G~~~i~~g~D 236 (253)
T d1dxea_ 179 AALGHLGNASHPDVQKAIQHIFNRASAHGKPSGILAPVEADARRYLEWGATFVAVGSD 236 (253)
T ss_dssp HHTTCTTCTTSHHHHHHHHHHHHHHHHTTCCEEEECCSHHHHHHHHHTTCCEEEEEEH
T ss_pred hhccCCCCCCChhHHHHHHHHHHHHHHcCCCeEEecCCHHHHHHHHHcCCCEEEehHH
Confidence 35577778999999999999998875322 11 112346899999987444444
No 9
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.36 E-value=2e+02 Score=17.42 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=17.0
Q ss_pred ccCCHHHHHHHHHHHHhhcc
Q 026332 34 INLTPQQAERLRRLKHRMKV 53 (240)
Q Consensus 34 ~~L~~~Q~~~L~~l~~~~~~ 53 (240)
-+|++.|+..|..+++.+..
T Consensus 6 gelt~~q~~~l~elr~~l~~ 25 (75)
T d1olma1 6 GDLSPRQKEALAKFRENVQD 25 (75)
T ss_dssp TBCCHHHHHHHHHHHHHHGG
T ss_pred ccCCHHHHHHHHHHHHHHHh
Confidence 36899999999999988754
No 10
>d1knza_ e.34.1.1 (A:) NSP3 homodimer {Simian 11 rotavirus [TaxId: 10923]}
Probab=5.59 E-value=4.8e+02 Score=18.40 Aligned_cols=43 Identities=9% Similarity=0.189 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhcc
Q 026332 181 AFDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLERELLM 224 (240)
Q Consensus 181 ~F~ely~~~f~~f~~~W~~~~at~~dF~~V~~~~r~ql~~~L~~ 224 (240)
.|+.-|-++.......-..++.+| ||++|...++....-.+..
T Consensus 8 I~n~af~aA~~~~~s~l~~~gi~y-D~~ev~~r~k~k~d~~mdD 50 (157)
T d1knza_ 8 IINSSFEAAVVAATSALENMGIEY-DYQDIYSRVKNKFDFVMDD 50 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHhhcceecc
Confidence 456666677777777777777665 7888888888776555443
Done!