Query 026335
Match_columns 240
No_of_seqs 113 out of 150
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 06:42:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026335.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026335hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3215 Uncharacterized conser 100.0 5.5E-47 1.2E-51 325.9 22.5 221 14-240 2-222 (222)
2 PF05615 THOC7: Tho complex su 100.0 1.2E-35 2.5E-40 243.4 16.9 136 27-165 1-139 (139)
3 KOG3215 Uncharacterized conser 97.4 0.0062 1.4E-07 53.7 13.5 119 81-204 6-124 (222)
4 COG1579 Zn-ribbon protein, pos 93.8 5 0.00011 36.3 17.2 113 85-201 36-149 (239)
5 PF07106 TBPIP: Tat binding pr 92.6 2.4 5.1E-05 35.6 11.2 33 151-183 105-137 (169)
6 PF14662 CCDC155: Coiled-coil 92.4 7.1 0.00015 34.3 16.7 130 77-206 5-139 (193)
7 PRK09039 hypothetical protein; 92.1 11 0.00023 35.6 18.1 128 75-202 48-184 (343)
8 PRK11637 AmiB activator; Provi 91.8 6.2 0.00013 37.9 14.4 39 160-198 94-132 (428)
9 PRK04863 mukB cell division pr 90.7 30 0.00066 38.9 19.9 107 99-205 298-412 (1486)
10 PF03962 Mnd1: Mnd1 family; I 90.3 5.7 0.00012 34.4 11.4 84 108-204 69-156 (188)
11 PRK02224 chromosome segregatio 90.1 16 0.00034 38.0 16.4 74 109-182 483-557 (880)
12 PHA02562 46 endonuclease subun 90.0 4.8 0.0001 39.3 11.9 26 109-134 300-325 (562)
13 TIGR01843 type_I_hlyD type I s 89.7 17 0.00037 33.7 16.3 95 98-192 134-233 (423)
14 PHA02562 46 endonuclease subun 89.6 18 0.0004 35.3 15.7 17 137-153 215-231 (562)
15 TIGR02169 SMC_prok_A chromosom 89.5 31 0.00066 36.5 19.6 22 163-184 449-470 (1164)
16 PF11932 DUF3450: Protein of u 88.4 18 0.00039 32.2 15.6 42 89-130 30-71 (251)
17 TIGR02168 SMC_prok_B chromosom 88.3 37 0.00079 35.7 20.1 21 165-185 436-456 (1179)
18 KOG0977 Nuclear envelope prote 86.9 29 0.00062 35.1 15.0 113 78-190 68-190 (546)
19 TIGR00606 rad50 rad50. This fa 86.3 59 0.0013 35.9 19.3 38 158-195 825-862 (1311)
20 KOG0933 Structural maintenance 86.3 37 0.0008 36.8 16.0 95 111-207 737-832 (1174)
21 TIGR02338 gimC_beta prefoldin, 86.1 15 0.00032 28.8 11.1 84 113-196 22-108 (110)
22 PF04111 APG6: Autophagy prote 85.7 27 0.00058 32.6 13.5 82 107-207 42-123 (314)
23 COG2433 Uncharacterized conser 85.0 23 0.00049 36.3 13.3 84 97-189 425-508 (652)
24 PRK04863 mukB cell division pr 83.3 44 0.00095 37.7 15.8 26 163-188 349-374 (1486)
25 TIGR02977 phageshock_pspA phag 83.3 31 0.00067 30.2 15.2 107 70-181 28-139 (219)
26 TIGR01005 eps_transp_fam exopo 82.7 51 0.0011 33.9 15.3 32 122-153 237-269 (754)
27 PRK11637 AmiB activator; Provi 82.7 47 0.001 31.9 19.5 19 114-132 102-120 (428)
28 PF12128 DUF3584: Protein of u 82.7 81 0.0017 34.6 18.4 106 101-209 299-410 (1201)
29 PRK09343 prefoldin subunit bet 82.3 24 0.00052 28.3 12.0 58 141-198 54-114 (121)
30 KOG0250 DNA repair protein RAD 82.3 81 0.0018 34.4 16.7 90 121-210 336-456 (1074)
31 TIGR03185 DNA_S_dndD DNA sulfu 81.5 61 0.0013 32.9 15.1 71 75-146 184-255 (650)
32 PRK03918 chromosome segregatio 79.9 80 0.0017 32.7 21.4 78 102-179 194-276 (880)
33 PF12325 TMF_TATA_bd: TATA ele 79.1 33 0.00071 27.8 13.3 48 159-206 65-112 (120)
34 PF09403 FadA: Adhesion protei 78.7 35 0.00076 28.0 13.5 98 76-188 23-126 (126)
35 KOG4302 Microtubule-associated 77.6 21 0.00045 36.9 10.3 43 166-208 100-142 (660)
36 KOG0993 Rab5 GTPase effector R 77.6 59 0.0013 32.1 12.7 108 104-224 103-216 (542)
37 KOG0996 Structural maintenance 76.9 1.3E+02 0.0028 33.4 22.2 29 1-31 754-782 (1293)
38 PF08317 Spc7: Spc7 kinetochor 76.9 27 0.00059 32.4 10.2 21 159-179 248-268 (325)
39 PRK03947 prefoldin subunit alp 76.3 39 0.00085 27.2 14.2 47 159-205 91-137 (140)
40 KOG0977 Nuclear envelope prote 74.5 1E+02 0.0022 31.2 15.8 96 85-180 90-187 (546)
41 COG1579 Zn-ribbon protein, pos 74.2 69 0.0015 29.1 19.0 60 159-218 93-152 (239)
42 KOG0239 Kinesin (KAR3 subfamil 73.0 1.2E+02 0.0026 31.4 15.8 115 98-212 172-291 (670)
43 PF00804 Syntaxin: Syntaxin; 73.0 34 0.00075 25.1 9.4 26 104-129 3-28 (103)
44 PF13851 GAS: Growth-arrest sp 72.2 67 0.0014 28.0 16.1 107 82-204 29-139 (201)
45 PRK10884 SH3 domain-containing 71.6 71 0.0015 28.1 11.3 12 166-177 143-154 (206)
46 KOG4343 bZIP transcription fac 71.2 12 0.00026 37.7 6.6 43 132-186 291-333 (655)
47 PF07888 CALCOCO1: Calcium bin 71.0 1.2E+02 0.0027 30.7 20.1 49 85-133 169-217 (546)
48 KOG0995 Centromere-associated 70.5 1.3E+02 0.0028 30.7 20.1 107 85-207 271-388 (581)
49 KOG0018 Structural maintenance 69.7 1.8E+02 0.0038 32.0 15.0 143 30-207 730-880 (1141)
50 PRK10361 DNA recombination pro 69.7 1.2E+02 0.0027 30.1 18.3 84 118-203 91-178 (475)
51 KOG0161 Myosin class II heavy 69.2 2.3E+02 0.0051 33.1 21.8 136 75-216 896-1032(1930)
52 COG3883 Uncharacterized protei 69.0 97 0.0021 28.6 11.7 73 97-188 34-106 (265)
53 PF07200 Mod_r: Modifier of ru 68.9 53 0.0011 26.7 9.1 58 147-204 19-76 (150)
54 PF07544 Med9: RNA polymerase 68.4 41 0.00089 25.2 7.7 53 117-182 23-79 (83)
55 PF11221 Med21: Subunit 21 of 68.1 22 0.00048 29.3 6.7 37 150-186 88-128 (144)
56 PRK04778 septation ring format 67.8 1.4E+02 0.003 30.0 22.0 107 100-206 309-427 (569)
57 COG1196 Smc Chromosome segrega 67.7 1.9E+02 0.0042 31.6 19.0 103 102-204 377-481 (1163)
58 KOG0161 Myosin class II heavy 67.7 2.5E+02 0.0054 32.9 20.0 131 71-207 1405-1536(1930)
59 PF05667 DUF812: Protein of un 67.5 1.5E+02 0.0033 30.3 14.7 117 75-194 382-534 (594)
60 KOG0971 Microtubule-associated 66.7 1.1E+02 0.0023 33.3 12.4 88 99-186 260-349 (1243)
61 PF07888 CALCOCO1: Calcium bin 66.7 1.5E+02 0.0033 30.1 17.7 82 97-178 146-236 (546)
62 TIGR00293 prefoldin, archaeal 66.1 63 0.0014 25.4 12.3 43 158-200 82-124 (126)
63 PF05529 Bap31: B-cell recepto 65.8 50 0.0011 28.1 8.7 17 160-176 173-189 (192)
64 TIGR01843 type_I_hlyD type I s 65.6 1.1E+02 0.0025 28.2 18.8 81 100-180 150-235 (423)
65 KOG4302 Microtubule-associated 65.4 1.1E+02 0.0024 31.8 12.2 91 112-211 100-202 (660)
66 PF10186 Atg14: UV radiation r 65.4 98 0.0021 27.3 13.5 46 160-205 117-162 (302)
67 KOG4657 Uncharacterized conser 65.1 1.1E+02 0.0024 27.8 11.9 111 21-154 16-126 (246)
68 PF02841 GBP_C: Guanylate-bind 65.1 73 0.0016 29.1 10.1 16 75-90 178-193 (297)
69 PF04012 PspA_IM30: PspA/IM30 64.8 92 0.002 26.9 15.7 72 46-120 5-77 (221)
70 TIGR02894 DNA_bind_RsfA transc 63.0 98 0.0021 26.5 10.0 46 162-207 111-156 (161)
71 KOG2264 Exostosin EXT1L [Signa 63.0 75 0.0016 32.8 10.3 44 94-137 86-129 (907)
72 COG1842 PspA Phage shock prote 62.7 1.1E+02 0.0025 27.2 16.2 142 46-192 3-150 (225)
73 TIGR00606 rad50 rad50. This fa 62.7 2.5E+02 0.0055 31.1 19.7 112 75-186 753-881 (1311)
74 PF10212 TTKRSYEDQ: Predicted 62.0 1.4E+02 0.0031 30.1 12.0 85 121-208 419-505 (518)
75 KOG1510 RNA polymerase II holo 61.6 75 0.0016 26.6 8.5 56 150-205 75-134 (139)
76 PRK03918 chromosome segregatio 61.6 2.1E+02 0.0045 29.8 19.9 11 81-91 208-218 (880)
77 PF08317 Spc7: Spc7 kinetochor 60.9 1.4E+02 0.0031 27.7 18.7 60 160-219 221-280 (325)
78 PF04420 CHD5: CHD5-like prote 60.6 56 0.0012 27.4 7.9 66 133-199 38-103 (161)
79 PF05769 DUF837: Protein of un 60.3 1.1E+02 0.0024 26.3 11.7 74 117-198 26-99 (181)
80 PF05667 DUF812: Protein of un 60.0 2.1E+02 0.0045 29.3 17.4 88 100-190 327-422 (594)
81 COG4942 Membrane-bound metallo 60.0 1.8E+02 0.0039 28.6 14.1 29 108-136 59-87 (420)
82 PF04048 Sec8_exocyst: Sec8 ex 59.9 95 0.0021 25.4 13.5 65 75-142 42-106 (142)
83 PF06160 EzrA: Septation ring 59.2 2E+02 0.0044 28.9 18.8 68 135-202 351-419 (560)
84 KOG0250 DNA repair protein RAD 58.1 2.9E+02 0.0063 30.4 17.3 63 143-205 735-798 (1074)
85 TIGR01010 BexC_CtrB_KpsE polys 57.5 1.6E+02 0.0035 27.3 12.3 76 120-201 212-289 (362)
86 PRK10884 SH3 domain-containing 57.4 1.4E+02 0.003 26.4 11.8 22 163-184 147-168 (206)
87 PRK05560 DNA gyrase subunit A; 57.4 2.6E+02 0.0056 29.6 14.7 63 147-209 415-477 (805)
88 TIGR01063 gyrA DNA gyrase, A s 56.9 1.8E+02 0.0038 30.8 12.3 62 147-208 412-473 (800)
89 TIGR01000 bacteriocin_acc bact 56.8 1.9E+02 0.0042 27.9 17.4 52 156-207 237-301 (457)
90 PF12128 DUF3584: Protein of u 56.7 3.1E+02 0.0067 30.2 20.0 75 113-187 633-710 (1201)
91 PF08614 ATG16: Autophagy prot 56.6 1.3E+02 0.0028 25.8 12.7 96 80-194 95-190 (194)
92 PRK10698 phage shock protein P 56.3 1.4E+02 0.0031 26.3 15.0 110 70-184 28-142 (222)
93 TIGR01061 parC_Gpos DNA topois 56.3 2.4E+02 0.0052 29.6 13.1 66 147-212 412-477 (738)
94 PF06810 Phage_GP20: Phage min 55.5 1.2E+02 0.0026 25.5 9.0 31 164-194 53-87 (155)
95 COG0188 GyrA Type IIA topoisom 55.0 2.6E+02 0.0057 29.8 13.1 77 133-211 404-483 (804)
96 TIGR00020 prfB peptide chain r 53.2 2.2E+02 0.0047 27.4 13.4 62 117-183 9-70 (364)
97 PF04380 BMFP: Membrane fusoge 53.2 27 0.00058 26.1 4.2 31 140-176 48-78 (79)
98 PF08657 DASH_Spc34: DASH comp 52.9 56 0.0012 29.8 7.1 77 102-181 181-258 (259)
99 TIGR03545 conserved hypothetic 52.8 1.5E+02 0.0032 30.1 10.6 73 112-186 168-243 (555)
100 KOG0996 Structural maintenance 51.2 3.9E+02 0.0085 29.9 18.2 117 76-201 401-518 (1293)
101 PF14282 FlxA: FlxA-like prote 50.6 71 0.0015 25.0 6.5 48 160-207 17-68 (106)
102 PF14335 DUF4391: Domain of un 50.5 82 0.0018 27.6 7.6 39 159-205 179-217 (221)
103 cd07674 F-BAR_FCHO1 The F-BAR 50.0 1.9E+02 0.0042 25.9 20.1 59 135-193 123-181 (261)
104 KOG4677 Golgi integral membran 49.3 2.9E+02 0.0063 27.7 16.4 143 82-224 205-364 (554)
105 TIGR02680 conserved hypothetic 48.2 4.4E+02 0.0096 29.6 19.3 56 157-212 328-383 (1353)
106 KOG4603 TBP-1 interacting prot 47.5 2E+02 0.0042 25.3 11.6 95 102-200 87-183 (201)
107 PF11559 ADIP: Afadin- and alp 47.4 1.5E+02 0.0033 24.0 14.6 85 97-193 48-132 (151)
108 KOG0804 Cytoplasmic Zn-finger 47.1 3.1E+02 0.0067 27.4 14.6 33 160-192 387-419 (493)
109 PF12761 End3: Actin cytoskele 46.6 2E+02 0.0043 25.4 9.2 39 156-194 154-192 (195)
110 TIGR01834 PHA_synth_III_E poly 46.0 2.7E+02 0.0058 26.4 11.4 76 105-182 229-316 (320)
111 PRK01156 chromosome segregatio 45.2 3.9E+02 0.0084 28.0 18.8 46 161-207 701-746 (895)
112 PF06637 PV-1: PV-1 protein (P 44.4 3.2E+02 0.0069 26.8 13.7 96 104-199 281-379 (442)
113 PF10234 Cluap1: Clusterin-ass 44.2 2.3E+02 0.0049 26.2 9.6 65 111-175 165-238 (267)
114 PF05983 Med7: MED7 protein; 44.0 2E+02 0.0043 24.3 10.2 39 100-138 123-161 (162)
115 PF02050 FliJ: Flagellar FliJ 43.9 1.3E+02 0.0028 22.2 10.2 62 78-141 24-85 (123)
116 PF13935 Ead_Ea22: Ead/Ea22-li 43.6 1.7E+02 0.0036 23.9 7.9 36 103-138 76-113 (139)
117 KOG0163 Myosin class VI heavy 43.3 4.6E+02 0.01 28.4 15.6 83 94-184 893-975 (1259)
118 PRK14154 heat shock protein Gr 43.2 1.6E+02 0.0035 26.1 8.2 54 154-207 51-120 (208)
119 PF04568 IATP: Mitochondrial A 42.4 85 0.0018 24.8 5.7 33 100-132 68-100 (100)
120 PF08606 Prp19: Prp19/Pso4-lik 42.3 1.4E+02 0.0031 22.2 7.6 56 111-166 11-68 (70)
121 PF14362 DUF4407: Domain of un 42.1 2.7E+02 0.0058 25.3 18.7 114 79-195 100-226 (301)
122 COG2433 Uncharacterized conser 42.0 3.4E+02 0.0074 28.1 11.1 30 104-133 418-447 (652)
123 KOG2008 BTK-associated SH3-dom 42.0 3.2E+02 0.007 26.2 17.3 109 101-212 117-233 (426)
124 PF15456 Uds1: Up-regulated Du 41.9 1.9E+02 0.0041 23.5 13.4 90 89-186 4-105 (124)
125 PF12289 Rotavirus_VP1: Rotavi 41.7 34 0.00074 23.6 2.9 18 184-201 19-36 (52)
126 PRK15178 Vi polysaccharide exp 41.7 2.2E+02 0.0048 28.0 9.6 47 161-207 285-331 (434)
127 COG3685 Uncharacterized protei 41.6 2.3E+02 0.005 24.4 15.0 129 74-211 9-144 (167)
128 KOG1853 LIS1-interacting prote 41.5 3E+02 0.0065 25.7 11.5 83 101-187 34-119 (333)
129 PF13514 AAA_27: AAA domain 41.4 5E+02 0.011 28.3 20.3 146 30-186 114-266 (1111)
130 PF10498 IFT57: Intra-flagella 41.1 3.3E+02 0.0071 26.1 14.2 99 105-211 224-322 (359)
131 PF14988 DUF4515: Domain of un 41.1 2.5E+02 0.0054 24.7 11.5 67 103-185 42-108 (206)
132 COG4942 Membrane-bound metallo 40.9 3.7E+02 0.0079 26.5 22.4 75 76-152 41-122 (420)
133 PF12761 End3: Actin cytoskele 40.1 68 0.0015 28.3 5.3 45 183-227 128-179 (195)
134 PRK05561 DNA topoisomerase IV 40.1 4.7E+02 0.01 27.5 13.5 65 148-212 423-487 (742)
135 PF13870 DUF4201: Domain of un 39.6 2.3E+02 0.0049 23.7 14.7 105 81-185 64-175 (177)
136 PF15035 Rootletin: Ciliary ro 39.5 2.5E+02 0.0054 24.2 13.4 35 97-131 5-39 (182)
137 PF08657 DASH_Spc34: DASH comp 39.4 1.6E+02 0.0035 26.9 7.9 51 144-195 163-213 (259)
138 PF10267 Tmemb_cc2: Predicted 39.2 3.8E+02 0.0081 26.2 17.1 59 77-135 230-289 (395)
139 PF04012 PspA_IM30: PspA/IM30 38.3 2.6E+02 0.0056 24.0 14.5 27 157-183 160-186 (221)
140 PF10473 CENP-F_leu_zip: Leuci 38.1 2.4E+02 0.0051 23.5 13.3 32 101-132 31-62 (140)
141 PF10174 Cast: RIM-binding pro 38.1 5.2E+02 0.011 27.5 20.5 61 151-211 422-493 (775)
142 COG5283 Phage-related tail pro 37.7 6.3E+02 0.014 28.3 15.2 95 110-204 59-169 (1213)
143 PF10146 zf-C4H2: Zinc finger- 37.7 3E+02 0.0066 24.7 15.2 43 163-205 61-103 (230)
144 PRK13979 DNA topoisomerase IV 37.2 5.8E+02 0.013 27.8 14.3 80 133-212 416-496 (957)
145 cd00187 TOP4c DNA Topoisomeras 37.1 4.2E+02 0.0091 26.1 13.6 54 148-201 391-444 (445)
146 TIGR02680 conserved hypothetic 37.1 6.5E+02 0.014 28.3 25.7 15 43-57 178-192 (1353)
147 PF10146 zf-C4H2: Zinc finger- 37.0 3.1E+02 0.0067 24.6 11.4 67 72-142 14-80 (230)
148 PRK09631 DNA topoisomerase IV 36.3 5.1E+02 0.011 26.9 14.2 61 145-208 387-447 (635)
149 COG1196 Smc Chromosome segrega 36.0 6.2E+02 0.013 27.8 23.7 39 96-134 248-286 (1163)
150 PF14197 Cep57_CLD_2: Centroso 36.0 1.7E+02 0.0037 21.3 9.5 66 121-191 4-69 (69)
151 PF14197 Cep57_CLD_2: Centroso 35.8 1.7E+02 0.0038 21.3 8.9 54 78-131 10-63 (69)
152 KOG3850 Predicted membrane pro 35.7 2.7E+02 0.0059 27.3 8.9 47 88-134 289-336 (455)
153 PRK13729 conjugal transfer pil 35.7 1.7E+02 0.0036 29.3 7.7 13 194-206 108-120 (475)
154 PRK00578 prfB peptide chain re 35.5 4.1E+02 0.009 25.6 12.0 64 115-183 7-70 (367)
155 KOG0980 Actin-binding protein 35.3 6.2E+02 0.013 27.5 19.9 18 190-207 501-518 (980)
156 PF12001 DUF3496: Domain of un 35.2 2.4E+02 0.0052 22.7 9.0 56 81-136 8-64 (111)
157 PF08581 Tup_N: Tup N-terminal 35.1 2E+02 0.0042 21.7 7.7 64 141-207 10-74 (79)
158 TIGR02894 DNA_bind_RsfA transc 35.0 2.9E+02 0.0063 23.7 11.7 54 154-207 96-149 (161)
159 PF05911 DUF869: Plant protein 35.0 5.8E+02 0.013 27.1 15.6 104 91-195 21-125 (769)
160 PF08781 DP: Transcription fac 34.4 2.1E+02 0.0046 24.0 7.2 42 169-210 1-42 (142)
161 PF08614 ATG16: Autophagy prot 34.1 2.6E+02 0.0057 23.8 8.0 46 159-204 113-158 (194)
162 PF07303 Occludin_ELL: Occludi 34.1 2.3E+02 0.0049 22.1 7.0 36 110-148 24-59 (101)
163 PF09177 Syntaxin-6_N: Syntaxi 33.7 2.1E+02 0.0046 21.6 9.3 60 46-106 13-72 (97)
164 PF04111 APG6: Autophagy prote 33.6 4E+02 0.0086 24.8 14.2 32 102-133 51-82 (314)
165 PF04100 Vps53_N: Vps53-like, 33.6 4.3E+02 0.0094 25.3 14.0 48 159-207 82-129 (383)
166 cd00632 Prefoldin_beta Prefold 33.4 2.2E+02 0.0048 21.8 13.0 42 162-203 63-104 (105)
167 PF02388 FemAB: FemAB family; 33.1 2.3E+02 0.005 27.1 8.2 24 112-135 246-269 (406)
168 PF07851 TMPIT: TMPIT-like pro 32.9 4.4E+02 0.0095 25.1 12.4 79 99-177 2-83 (330)
169 PF05791 Bacillus_HBL: Bacillu 32.9 3.1E+02 0.0068 23.4 8.8 45 141-186 90-134 (184)
170 PF07195 FliD_C: Flagellar hoo 32.8 1.6E+02 0.0035 25.9 6.6 40 161-203 199-238 (239)
171 KOG0018 Structural maintenance 32.8 7.3E+02 0.016 27.6 15.0 121 75-202 215-343 (1141)
172 PF04508 Pox_A_type_inc: Viral 32.2 74 0.0016 18.7 2.9 20 116-135 2-21 (23)
173 cd00584 Prefoldin_alpha Prefol 32.1 2.5E+02 0.0054 22.0 12.7 44 159-202 84-127 (129)
174 KOG0995 Centromere-associated 31.9 5.8E+02 0.013 26.2 15.4 105 72-176 265-374 (581)
175 TIGR01010 BexC_CtrB_KpsE polys 31.6 4.2E+02 0.0092 24.5 11.5 88 114-207 169-259 (362)
176 PRK09841 cryptic autophosphory 31.5 6E+02 0.013 26.3 16.5 86 88-179 275-363 (726)
177 PRK07737 fliD flagellar cappin 31.3 1.6E+02 0.0035 29.2 7.0 44 160-206 446-489 (501)
178 COG0419 SbcC ATPase involved i 31.3 6.6E+02 0.014 26.7 16.6 27 106-132 169-195 (908)
179 cd07673 F-BAR_FCHO2 The F-BAR 30.9 4.1E+02 0.0088 24.1 20.1 60 135-194 130-189 (269)
180 PHA02682 ORF080 virion core pr 30.9 1.6E+02 0.0034 26.5 6.1 56 155-213 208-263 (280)
181 PF09730 BicD: Microtubule-ass 30.8 6.6E+02 0.014 26.5 14.3 105 78-182 32-141 (717)
182 PF14389 Lzipper-MIP1: Leucine 30.4 2.4E+02 0.0053 21.3 9.4 65 116-186 9-78 (88)
183 COG4847 Uncharacterized protei 30.3 66 0.0014 25.4 3.3 20 134-153 79-98 (103)
184 PRK08032 fliD flagellar cappin 30.0 2E+02 0.0043 28.2 7.3 44 160-206 411-454 (462)
185 PF09032 Siah-Interact_N: Siah 29.8 93 0.002 23.5 3.9 44 116-176 4-47 (79)
186 PF09787 Golgin_A5: Golgin sub 29.6 5.7E+02 0.012 25.3 13.5 32 102-133 208-239 (511)
187 PF05700 BCAS2: Breast carcino 29.5 3.9E+02 0.0084 23.4 15.8 97 83-181 111-215 (221)
188 TIGR02231 conserved hypothetic 29.4 5.6E+02 0.012 25.2 13.7 45 156-200 125-169 (525)
189 COG5509 Uncharacterized small 29.0 1.3E+02 0.0028 21.9 4.3 27 155-181 25-51 (65)
190 TIGR01000 bacteriocin_acc bact 29.0 5.3E+02 0.012 24.8 15.7 52 156-207 244-308 (457)
191 PLN02678 seryl-tRNA synthetase 28.9 5.7E+02 0.012 25.2 10.3 71 100-186 32-102 (448)
192 PRK06798 fliD flagellar cappin 28.6 2.4E+02 0.0051 27.6 7.5 43 161-206 385-427 (440)
193 PF13942 Lipoprotein_20: YfhG 28.6 2.2E+02 0.0047 24.8 6.4 42 98-139 113-154 (179)
194 KOG0994 Extracellular matrix g 28.0 9.4E+02 0.02 27.4 16.3 36 171-206 1712-1747(1758)
195 PF12718 Tropomyosin_1: Tropom 28.0 3.4E+02 0.0075 22.3 17.1 100 86-201 20-122 (143)
196 PF08826 DMPK_coil: DMPK coile 27.9 2.3E+02 0.005 20.3 8.1 23 113-135 16-38 (61)
197 PF09726 Macoilin: Transmembra 27.7 7.3E+02 0.016 26.0 16.6 119 104-234 541-666 (697)
198 PF00521 DNA_topoisoIV: DNA gy 27.6 5.7E+02 0.012 24.7 12.3 103 76-187 306-416 (426)
199 TIGR02977 phageshock_pspA phag 27.4 4.2E+02 0.009 23.1 15.9 41 113-153 29-70 (219)
200 KOG2264 Exostosin EXT1L [Signa 27.3 4.5E+02 0.0097 27.4 9.2 38 100-137 106-143 (907)
201 PRK11546 zraP zinc resistance 27.0 3.8E+02 0.0082 22.5 9.5 61 97-176 43-103 (143)
202 PF04201 TPD52: Tumour protein 26.8 2.3E+02 0.0049 24.4 6.2 44 164-207 31-79 (162)
203 PF05615 THOC7: Tho complex su 26.6 3.4E+02 0.0073 21.8 13.8 86 104-202 42-127 (139)
204 PF02403 Seryl_tRNA_N: Seryl-t 26.5 2.9E+02 0.0063 21.0 11.2 41 146-186 54-98 (108)
205 PF11802 CENP-K: Centromere-as 26.3 5.3E+02 0.011 23.9 11.3 51 104-154 92-143 (268)
206 PF08826 DMPK_coil: DMPK coile 26.2 2.5E+02 0.0054 20.1 7.5 44 165-208 14-57 (61)
207 PRK09039 hypothetical protein; 26.1 5.6E+02 0.012 24.1 17.1 50 159-208 134-183 (343)
208 PRK11546 zraP zinc resistance 25.9 3E+02 0.0065 23.1 6.7 26 114-139 88-113 (143)
209 PRK05892 nucleoside diphosphat 25.8 3.5E+02 0.0076 22.6 7.2 49 160-208 9-72 (158)
210 cd07909 YciF YciF bacterial st 25.7 2.9E+02 0.0063 23.0 6.6 128 74-212 3-139 (147)
211 PRK06800 fliH flagellar assemb 25.3 4.9E+02 0.011 23.2 9.5 64 75-138 40-103 (228)
212 PRK04325 hypothetical protein; 24.9 2.8E+02 0.0062 20.3 8.3 50 159-208 6-55 (74)
213 KOG4196 bZIP transcription fac 24.9 3.6E+02 0.0077 22.5 6.8 41 112-152 78-119 (135)
214 KOG4643 Uncharacterized coiled 24.8 9.9E+02 0.021 26.6 15.7 125 76-207 173-311 (1195)
215 PRK14160 heat shock protein Gr 24.6 5E+02 0.011 23.1 9.3 28 192-219 114-143 (211)
216 PF12805 FUSC-like: FUSC-like 24.5 5.2E+02 0.011 23.2 8.9 70 108-177 179-258 (284)
217 cd00179 SynN Syntaxin N-termin 24.4 3.6E+02 0.0078 21.3 12.3 95 104-207 2-112 (151)
218 KOG0837 Transcriptional activa 24.3 4.6E+02 0.0099 24.4 8.0 46 155-200 220-265 (279)
219 PRK05431 seryl-tRNA synthetase 24.2 6.6E+02 0.014 24.3 10.0 30 157-186 68-97 (425)
220 PF06005 DUF904: Protein of un 24.0 3E+02 0.0065 20.3 10.5 55 111-184 7-61 (72)
221 PRK10246 exonuclease subunit S 23.9 9.6E+02 0.021 26.1 16.2 50 154-203 821-873 (1047)
222 KOG2391 Vacuolar sorting prote 23.9 5.5E+02 0.012 24.8 8.7 26 133-158 216-241 (365)
223 COG1842 PspA Phage shock prote 23.7 5.3E+02 0.011 23.0 15.6 95 101-196 106-204 (225)
224 PF13600 DUF4140: N-terminal d 23.6 1.9E+02 0.0041 21.9 4.8 35 158-192 66-100 (104)
225 PF02994 Transposase_22: L1 tr 23.5 3.8E+02 0.0082 25.5 7.8 48 160-207 142-189 (370)
226 PF11559 ADIP: Afadin- and alp 23.4 4E+02 0.0087 21.5 14.1 59 116-176 88-147 (151)
227 PRK06342 transcription elongat 23.4 2.9E+02 0.0063 23.3 6.3 49 159-207 31-81 (160)
228 PF04859 DUF641: Plant protein 23.4 4.3E+02 0.0092 21.8 7.2 42 96-137 82-123 (131)
229 PF00429 TLV_coat: ENV polypro 23.2 3.4E+02 0.0073 27.5 7.7 78 101-178 421-511 (561)
230 KOG4010 Coiled-coil protein TP 23.2 3.3E+02 0.0071 24.2 6.6 45 163-207 45-94 (208)
231 PF05700 BCAS2: Breast carcino 23.2 5.1E+02 0.011 22.7 13.1 73 104-176 139-217 (221)
232 PRK02793 phi X174 lysis protei 22.8 3.1E+02 0.0067 20.0 8.5 51 158-208 4-54 (72)
233 PF12795 MscS_porin: Mechanose 22.5 5.3E+02 0.011 22.6 12.1 36 155-190 78-113 (240)
234 PF11460 DUF3007: Protein of u 22.5 66 0.0014 25.7 2.0 16 133-148 64-79 (104)
235 COG4477 EzrA Negative regulato 22.5 8.5E+02 0.018 25.0 18.2 137 71-207 290-434 (570)
236 PF00170 bZIP_1: bZIP transcri 22.5 2.7E+02 0.0059 19.3 8.5 36 161-196 25-60 (64)
237 TIGR00999 8a0102 Membrane Fusi 22.3 4.8E+02 0.01 22.4 7.7 9 101-109 37-45 (265)
238 PF13851 GAS: Growth-arrest sp 22.3 5.2E+02 0.011 22.4 14.9 32 103-134 15-46 (201)
239 PRK02119 hypothetical protein; 22.0 3.3E+02 0.0071 20.0 8.3 50 159-208 6-55 (73)
240 KOG3958 Putative dynamitin [Cy 21.9 3.9E+02 0.0085 25.5 7.2 12 140-151 123-134 (371)
241 PF05308 Mito_fiss_reg: Mitoch 21.8 1.4E+02 0.0031 27.2 4.3 30 153-182 113-142 (253)
242 PF06705 SF-assemblin: SF-asse 21.6 5.6E+02 0.012 22.6 16.9 140 83-227 92-242 (247)
243 PRK15030 multidrug efflux syst 21.6 6.3E+02 0.014 23.8 8.9 33 79-111 102-134 (397)
244 TIGR01062 parC_Gneg DNA topois 21.6 9.7E+02 0.021 25.3 12.7 67 147-213 409-475 (735)
245 KOG0981 DNA topoisomerase I [R 21.5 2.5E+02 0.0055 29.1 6.3 28 112-139 633-660 (759)
246 PF00901 Orbi_VP5: Orbivirus o 21.4 8.6E+02 0.019 24.6 11.3 42 132-173 180-223 (508)
247 PF06103 DUF948: Bacterial pro 21.4 3.4E+02 0.0074 20.0 8.1 49 160-208 38-86 (90)
248 COG2882 FliJ Flagellar biosynt 21.4 5E+02 0.011 21.9 11.5 66 78-143 38-106 (148)
249 PF05130 FlgN: FlgN protein; 21.3 3.7E+02 0.0081 20.4 10.2 102 90-201 26-127 (143)
250 COG5509 Uncharacterized small 21.3 1.8E+02 0.004 21.1 3.9 25 111-135 28-52 (65)
251 PF12325 TMF_TATA_bd: TATA ele 21.3 4.4E+02 0.0096 21.3 12.7 16 162-177 96-111 (120)
252 PRK06664 fliD flagellar hook-a 21.2 3.5E+02 0.0076 28.0 7.5 42 161-205 606-647 (661)
253 PRK00295 hypothetical protein; 20.9 3.3E+02 0.0072 19.6 8.0 48 161-208 4-51 (68)
254 PRK12339 2-phosphoglycerate ki 20.8 87 0.0019 27.0 2.7 33 24-56 127-159 (197)
255 PF00038 Filament: Intermediat 20.8 6.2E+02 0.013 22.7 20.9 151 69-219 78-259 (312)
256 PF06698 DUF1192: Protein of u 20.8 3.3E+02 0.0071 19.5 5.7 24 156-179 22-45 (59)
257 COG0172 SerS Seryl-tRNA synthe 20.6 8E+02 0.017 24.2 9.4 75 117-199 31-105 (429)
258 PF07200 Mod_r: Modifier of ru 20.6 4.6E+02 0.0099 21.1 12.5 86 114-205 54-139 (150)
259 KOG1029 Endocytic adaptor prot 20.5 1.1E+03 0.024 25.6 14.6 101 100-211 374-500 (1118)
260 PLN02320 seryl-tRNA synthetase 20.4 8.9E+02 0.019 24.4 10.6 31 156-186 131-161 (502)
261 PF04420 CHD5: CHD5-like prote 20.3 4.2E+02 0.0091 22.1 6.6 58 153-211 32-94 (161)
262 PF04102 SlyX: SlyX; InterPro 20.3 3.4E+02 0.0073 19.5 7.7 49 160-208 2-50 (69)
263 KOG0933 Structural maintenance 20.3 1.2E+03 0.026 25.9 19.2 92 121-214 768-867 (1174)
264 PF14915 CCDC144C: CCDC144C pr 20.2 7.4E+02 0.016 23.4 14.7 68 75-142 181-248 (305)
265 KOG3564 GTPase-activating prot 20.1 9.4E+02 0.02 24.5 12.3 60 79-138 6-65 (604)
266 cd01109 HTH_YyaN Helix-Turn-He 20.0 3.4E+02 0.0075 20.8 5.7 56 76-131 47-102 (113)
No 1
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.5e-47 Score=325.86 Aligned_cols=221 Identities=38% Similarity=0.489 Sum_probs=212.7
Q ss_pred CCCCCCCCCCCChhHHHHHhhhccCCCCCCCchHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHhccchhhhhHH
Q 026335 14 TVPVNYAFGPHEDDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVLEIEKDEDNNNDCEKLAKAFLQELSTFEIPLLKSK 93 (240)
Q Consensus 14 ~~~~~~~l~~~~edeiIk~RLL~dg~~~gderpLkrL~Kkf~~~~~~~~~~~d~~~~~~~l~e~~l~eLa~~E~s~~K~~ 93 (240)
++.++|+++++.+|.+||+||+++|+|+|++||++.|.|+|..|++..+.++.++++|.++...||.+|.+||++|.|++
T Consensus 2 ~~~a~~a~~~ltddk~iR~rll~~ge~~~~dr~v~~l~ksf~~~~~E~~kee~~y~ea~ri~Ka~L~~Lsq~E~~mlKtq 81 (222)
T KOG3215|consen 2 YDRAQFAQCKLTDDKNIRTRLLIDGEGDGGDRLVEHLEKSFVLAKAEIEKEEKEYSEAKRIRKALLASLSQDEPSMLKTQ 81 (222)
T ss_pred chHHHhhcCccchhHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHhhcccchHHHH
Confidence 45589999999999999999999999999999999999999999999988888999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 026335 94 AVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAA 173 (240)
Q Consensus 94 ~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~ 173 (240)
.|..||.||+++|.+.+.+|+.+|+.++++|+.||.+|.+||++|+||++|++|+++|..+|||.||.+.|.+|.++|++
T Consensus 82 rv~e~nlre~e~~~q~k~Eiersi~~a~~kie~lkkql~eaKi~r~nrqe~~~l~kvis~~p~RsEt~k~l~el~kelee 161 (222)
T KOG3215|consen 82 RVIEMNLREIENLVQKKLEIERSIQKARNKIELLKKQLHEAKIVRLNRQEYSALSKVISDCPARSETDKDLNELKKELEE 161 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhcCCcCCCCCCCccccCC
Q 026335 174 LEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEEQKNLIEEMRMAEEQKGGMEDASGGSEAMAVD 240 (240)
Q Consensus 174 L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~de~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 240 (240)
+++.+.....+|+.||+||+.||+++++||.++++|+.+..++.. ...+++++.++||++|
T Consensus 162 l~~~~~s~~~klelrRkqf~~lm~~~~elQ~amedeedt~v~e~~------~~de~~~~vtea~~~d 222 (222)
T KOG3215|consen 162 LDDLNNSTETKLELRRKQFKYLMVSTEELQCAMEDEEDTVVEESI------DADEDDVDVTEANSED 222 (222)
T ss_pred HHHHhhhhHHHHHHHhhcchHHHhhHHHHHhhhhhhhhhHHHhcc------ccchhhhhhhcccCCC
Confidence 999999999999999999999999999999999999988887776 6666778889999987
No 2
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=100.00 E-value=1.2e-35 Score=243.40 Aligned_cols=136 Identities=40% Similarity=0.606 Sum_probs=128.5
Q ss_pred hHHHHHhhhccCCCCCCCchHHHHHHHHHHhhhhcCCCCCCh--hHHHHHHHHHHHHHhccchhhhhHHHHHHHhHHHHH
Q 026335 27 DVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVLEIEKDEDNN--NDCEKLAKAFLQELSTFEIPLLKSKAVIDANLREKE 104 (240)
Q Consensus 27 deiIk~RLL~dg~~~gderpLkrL~Kkf~~~~~~~~~~~d~~--~~~~~l~e~~l~eLa~~E~s~~K~~~v~~aN~rE~e 104 (240)
|+|||+|||++| |+|||||+|+|+|++|++..++++.+. ..++.+++.|+.+|++|+|+|.|++++++||.+|++
T Consensus 1 d~iik~RLl~~~---~~dr~l~~l~k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e 77 (139)
T PF05615_consen 1 DEIIKRRLLIDG---GDDRPLKRLLKRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEFSILKSQLILEMNKRERE 77 (139)
T ss_pred CHHHHHHHhhcc---cCchhHHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999998 899999999999999999987554433 667888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCC-ChHHHHHHHH
Q 026335 105 NFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQP-PRSETQRIIT 165 (240)
Q Consensus 105 ~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~P-sR~et~~~I~ 165 (240)
+|++++.+|+.+|+.++.+|++||.+|..||.+|+||++||+||+.|+++| ||++|+++|+
T Consensus 78 ~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~eyd~La~~I~~~p~sR~e~~~~l~ 139 (139)
T PF05615_consen 78 NYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNKEEYDALAKKINSQPTSREETEKELE 139 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999 9999998873
No 3
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.0062 Score=53.65 Aligned_cols=119 Identities=22% Similarity=0.206 Sum_probs=104.5
Q ss_pred HHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHH
Q 026335 81 ELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSET 160 (240)
Q Consensus 81 eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et 160 (240)
.|+.|-+.--|.-.-.-+-.-+..+|....+.|+..+...+.+|+.-+..+..|++++++ -|+.++.-.||+-.|
T Consensus 6 ~~a~~~ltddk~iR~rll~~ge~~~~dr~v~~l~ksf~~~~~E~~kee~~y~ea~ri~Ka-----~L~~Lsq~E~~mlKt 80 (222)
T KOG3215|consen 6 QFAQCKLTDDKNIRTRLLIDGEGDGGDRLVEHLEKSFVLAKAEIEKEEKEYSEAKRIRKA-----LLASLSQDEPSMLKT 80 (222)
T ss_pred HhhcCccchhHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHH-----HHHHHhhcccchHHH
Confidence 344444444443333445566788999999999999999999999999999999999998 899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 161 QRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQN 204 (240)
Q Consensus 161 ~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~ 204 (240)
+.-++.-..|++.+..-....++.+..+++-|.++...|+++..
T Consensus 81 qrv~e~nlre~e~~~q~k~Eiersi~~a~~kie~lkkql~eaKi 124 (222)
T KOG3215|consen 81 QRVIEMNLREIENLVQKKLEIERSIQKARNKIELLKKQLHEAKI 124 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999986
No 4
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.80 E-value=5 Score=36.33 Aligned_cols=113 Identities=21% Similarity=0.215 Sum_probs=70.7
Q ss_pred cchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCh-HHHHHH
Q 026335 85 FEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPR-SETQRI 163 (240)
Q Consensus 85 ~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR-~et~~~ 163 (240)
....+.+..--...-..+++.|.....+++.+|..++..|..+...|..++..+ +|.+|-..|...-.| ......
T Consensus 36 ~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~----e~~aL~~E~~~ak~r~~~le~e 111 (239)
T COG1579 36 AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDER----ELRALNIEIQIAKERINSLEDE 111 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444555678899999999999999999999999999996666654 688887777654332 233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 164 ITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDE 201 (240)
Q Consensus 164 I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~ 201 (240)
|..|.+++..|+.+...+...+..=++.|..+-..+..
T Consensus 112 l~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~ 149 (239)
T COG1579 112 LAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEE 149 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544444444444444444444333
No 5
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=92.64 E-value=2.4 Score=35.62 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=21.7
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 151 IAVQPPRSETQRIITDLEKEIAALEAENTAGSR 183 (240)
Q Consensus 151 I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~ 183 (240)
+++.|+-++....|..|+.+|..++.....+..
T Consensus 105 L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 105 LSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556677777777777777777766666554443
No 6
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=92.43 E-value=7.1 Score=34.30 Aligned_cols=130 Identities=16% Similarity=0.148 Sum_probs=102.2
Q ss_pred HHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC--
Q 026335 77 AFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQ-- 154 (240)
Q Consensus 77 ~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~-- 154 (240)
+++..+.-++.+=.|+.=-.....+.++..+....++-.+|...+..+-.+..-|..||.+-..=+.--.+++.+.+.
T Consensus 5 dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~ 84 (193)
T PF14662_consen 5 DLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENR 84 (193)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777777777778888999999999999999999999999999999998887777666777777642
Q ss_pred ---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 155 ---PPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTM 206 (240)
Q Consensus 155 ---PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l 206 (240)
--...+++....|-.+|+.|..++..+..-.+.=+++..-|-..-..|+..|
T Consensus 85 ~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 85 SLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 3456777888888999999999998888777766666666666666666666
No 7
>PRK09039 hypothetical protein; Validated
Probab=92.13 E-value=11 Score=35.64 Aligned_cols=128 Identities=14% Similarity=0.133 Sum_probs=96.3
Q ss_pred HHHHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHHHHHH
Q 026335 75 AKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEE--------SKIERQHKEECEA 146 (240)
Q Consensus 75 ~e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~--------Ak~~R~nK~EYD~ 146 (240)
...+-.+|+.++..|.-+.-+..++.......+..-..+..+...++.+-+.|+..+.. ..+...+..+++.
T Consensus 48 i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~ 127 (343)
T PRK09039 48 ISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDS 127 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHH
Confidence 44556678888888888888888888888888888888888888888888888775442 2333445567777
Q ss_pred HHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 147 IRKLIA-VQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDEL 202 (240)
Q Consensus 147 LAk~I~-~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~L 202 (240)
.-..++ .+|.-.-...+|+.|+..|+.|+......+..-..-+.++..|=..|+..
T Consensus 128 ~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 128 EKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777 47888888888888888888888888888888877777777774444333
No 8
>PRK11637 AmiB activator; Provisional
Probab=91.84 E-value=6.2 Score=37.87 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 160 TQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHV 198 (240)
Q Consensus 160 t~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~ 198 (240)
++..|..++.+|..++.+...+...+..++++|...+..
T Consensus 94 ~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra 132 (428)
T PRK11637 94 TQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDA 132 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555544444433
No 9
>PRK04863 mukB cell division protein MukB; Provisional
Probab=90.75 E-value=30 Score=38.94 Aligned_cols=107 Identities=14% Similarity=0.100 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCC--------ChHHHHHHHHHHHHH
Q 026335 99 NLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQP--------PRSETQRIITDLEKE 170 (240)
Q Consensus 99 N~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~P--------sR~et~~~I~~Le~E 170 (240)
..+.++.-+.-..+|...+.....++..|+.+++.|+.-+....+|-.+...|..+. ...+....++.++.+
T Consensus 298 A~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleee 377 (1486)
T PRK04863 298 SRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQ 377 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666677777777777777777777777777776666555445554332 223334444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 171 IAALEAENTAGSRLLELRKKQFALLLHVVDELQNT 205 (240)
Q Consensus 171 i~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~ 205 (240)
+..+..+...+...+..-+.+...+...+..++..
T Consensus 378 leeleeEleelEeeLeeLqeqLaelqqel~elQ~e 412 (1486)
T PRK04863 378 QEENEARAEAAEEEVDELKSQLADYQQALDVQQTR 412 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555554444444444444444433
No 10
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=90.33 E-value=5.7 Score=34.42 Aligned_cols=84 Identities=21% Similarity=0.322 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH----H
Q 026335 108 ELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGS----R 183 (240)
Q Consensus 108 ~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~----~ 183 (240)
.....+..+++..+..|..|+..|+.++..|..- ..|......++.|++++..|+.+...|. .
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-------------~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~ 135 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-------------EEREELLEELEELKKELKELKKELEKYSENDPE 135 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 3445677778888999999999999987776543 4588888999999999999998888664 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026335 184 LLELRKKQFALLLHVVDELQN 204 (240)
Q Consensus 184 kl~~RrkQF~~Ll~~i~~Lq~ 204 (240)
+++.-+.....+...++....
T Consensus 136 ~i~~~~~~~~~~~~~anrwTD 156 (188)
T PF03962_consen 136 KIEKLKEEIKIAKEAANRWTD 156 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555444433
No 11
>PRK02224 chromosome segregation protein; Provisional
Probab=90.08 E-value=16 Score=38.02 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 109 LKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQ-PPRSETQRIITDLEKEIAALEAENTAGS 182 (240)
Q Consensus 109 ~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~-PsR~et~~~I~~Le~Ei~~L~~e~~~~~ 182 (240)
....++.++..++.+.+.++..+...+.....+..|+.+-..|... -..++....+..|++++..|......+.
T Consensus 483 ~~~~le~~l~~~~~~~e~l~~~~~~~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~ 557 (880)
T PRK02224 483 ELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKR 557 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444555666666555432 1234444455555555555544443333
No 12
>PHA02562 46 endonuclease subunit; Provisional
Probab=89.97 E-value=4.8 Score=39.34 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 109 LKEEINRQTLQAKADIEDLKKQLEES 134 (240)
Q Consensus 109 ~~~~Ie~~i~~~k~~Ie~LK~eL~~A 134 (240)
....|...+...+.++..+...+...
T Consensus 300 ~~~~l~d~i~~l~~~l~~l~~~i~~~ 325 (562)
T PHA02562 300 RITKIKDKLKELQHSLEKLDTAIDEL 325 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555554444433
No 13
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.71 E-value=17 Score=33.74 Aligned_cols=95 Identities=25% Similarity=0.170 Sum_probs=54.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHHH
Q 026335 98 ANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIER-QHKEECEAIRKLIAV----QPPRSETQRIITDLEKEIA 172 (240)
Q Consensus 98 aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R-~nK~EYD~LAk~I~~----~PsR~et~~~I~~Le~Ei~ 172 (240)
....+...|+.....++.++...+.+|..++.++..++... ..+..|+..-+.+.+ ..........+..++.++.
T Consensus 134 ~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~~~~~~~~~~~~~l~ 213 (423)
T TIGR01843 134 LFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELG 213 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHH
Confidence 34455666777777777777777777777777777666443 333456666555553 2333345555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026335 173 ALEAENTAGSRLLELRKKQF 192 (240)
Q Consensus 173 ~L~~e~~~~~~kl~~RrkQF 192 (240)
.++.+...+...+..-+.++
T Consensus 214 ~~~~~l~~~~~~l~~~~~~~ 233 (423)
T TIGR01843 214 RLEAELEVLKRQIDELQLER 233 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555444443333
No 14
>PHA02562 46 endonuclease subunit; Provisional
Probab=89.59 E-value=18 Score=35.28 Aligned_cols=17 Identities=0% Similarity=0.053 Sum_probs=9.0
Q ss_pred HHHhHHHHHHHHHHHhc
Q 026335 137 ERQHKEECEAIRKLIAV 153 (240)
Q Consensus 137 ~R~nK~EYD~LAk~I~~ 153 (240)
+...+.+|+.+.+.+..
T Consensus 215 i~~l~~e~~~l~~~~~~ 231 (562)
T PHA02562 215 IARKQNKYDELVEEAKT 231 (562)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455556655555544
No 15
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=89.55 E-value=31 Score=36.45 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026335 163 IITDLEKEIAALEAENTAGSRL 184 (240)
Q Consensus 163 ~I~~Le~Ei~~L~~e~~~~~~k 184 (240)
.|..++.++..+..+...+...
T Consensus 449 ~l~~l~~~~~~~~~~~~~~~~~ 470 (1164)
T TIGR02169 449 EIKKQEWKLEQLAADLSKYEQE 470 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 16
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=88.39 E-value=18 Score=32.24 Aligned_cols=42 Identities=14% Similarity=0.194 Sum_probs=27.1
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 89 LLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQ 130 (240)
Q Consensus 89 ~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~e 130 (240)
..+..-...........+.+.+..+..++..+..+++.|+..
T Consensus 30 ~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~ 71 (251)
T PF11932_consen 30 QQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVY 71 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566666777777777777777777777766653
No 17
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=88.27 E-value=37 Score=35.70 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026335 165 TDLEKEIAALEAENTAGSRLL 185 (240)
Q Consensus 165 ~~Le~Ei~~L~~e~~~~~~kl 185 (240)
..++.++..+..+...+...+
T Consensus 436 ~~~~~~~~~~~~~~~~l~~~~ 456 (1179)
T TIGR02168 436 KELQAELEELEEELEELQEEL 456 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444433333333
No 18
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=86.87 E-value=29 Score=35.13 Aligned_cols=113 Identities=17% Similarity=0.247 Sum_probs=59.2
Q ss_pred HHHHHhccchhhhhH-HHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhH-HHHHHH
Q 026335 78 FLQELSTFEIPLLKS-KAVIDANLREKE-------NFNELKEEINRQTLQAKADIEDLKKQLEESKIE-RQHK-EECEAI 147 (240)
Q Consensus 78 ~l~eLa~~E~s~~K~-~~v~~aN~rE~e-------~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~-R~nK-~EYD~L 147 (240)
+..+|..++-.+.+- .-|..+-..|+- .-...+...+.+|...+.++.+||..+..+... +..+ .-++.+
T Consensus 68 L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~ 147 (546)
T KOG0977|consen 68 LEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYL 147 (546)
T ss_pred HHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 445555555554442 223333333333 333344444555666666666666666666222 2222 233344
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 148 RKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKK 190 (240)
Q Consensus 148 Ak~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~Rrk 190 (240)
....+-.-...-....|..|+.++..|..++..+...|..=|+
T Consensus 148 ~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 148 SRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4433444556666677777777777777777766666665444
No 19
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.27 E-value=59 Score=35.95 Aligned_cols=38 Identities=11% Similarity=0.214 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 158 SETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALL 195 (240)
Q Consensus 158 ~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~L 195 (240)
++.+..|..++.++..+..+...+...+....+++..|
T Consensus 825 ~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 825 QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444
No 20
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.25 E-value=37 Score=36.82 Aligned_cols=95 Identities=19% Similarity=0.327 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 111 EEINRQTLQAKADIEDLKKQLEESKIERQH-KEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRK 189 (240)
Q Consensus 111 ~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~n-K~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~Rr 189 (240)
.++...+.....++++++.++..-....+. -.+|-.|=+.++.+ -..-...+..|+++|..+....+.-...|+.|.
T Consensus 737 ~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~--~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~ 814 (1174)
T KOG0933|consen 737 HKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDA--KANRERRLKDLEKEIKTAKQRAEESSKELEKRE 814 (1174)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555544332221 12222333333322 223345566666777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026335 190 KQFALLLHVVDELQNTME 207 (240)
Q Consensus 190 kQF~~Ll~~i~~Lq~~l~ 207 (240)
.-|..|.-.+.+|...+.
T Consensus 815 ~e~e~l~lE~e~l~~e~~ 832 (1174)
T KOG0933|consen 815 NEYERLQLEHEELEKEIS 832 (1174)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777666666665554
No 21
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=86.08 E-value=15 Score=28.84 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 113 INRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQP---PRSETQRIITDLEKEIAALEAENTAGSRLLELRK 189 (240)
Q Consensus 113 Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~P---sR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~Rr 189 (240)
+...+.....++.+++..+..=...-....-|-.+..+....| -......+++.++..|..|......+..++..=+
T Consensus 22 l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q 101 (110)
T TIGR02338 22 VATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQ 101 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333433333333333346667777777777654 2344456666666666677666666666666666
Q ss_pred HHHHHHH
Q 026335 190 KQFALLL 196 (240)
Q Consensus 190 kQF~~Ll 196 (240)
++|..++
T Consensus 102 ~~l~~~~ 108 (110)
T TIGR02338 102 EKIQEAL 108 (110)
T ss_pred HHHHHHh
Confidence 6655544
No 22
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=85.73 E-value=27 Score=32.60 Aligned_cols=82 Identities=26% Similarity=0.306 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 107 NELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLE 186 (240)
Q Consensus 107 ~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~ 186 (240)
......++.++.....+...+..+|......+ ++..++|..|+.+...|..+...+-....
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~-------------------~~l~~el~~le~e~~~l~~eE~~~~~~~n 102 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKER-------------------EELDQELEELEEELEELDEEEEEYWREYN 102 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666665554432 34445666777777777665554433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026335 187 LRKKQFALLLHVVDELQNTME 207 (240)
Q Consensus 187 ~RrkQF~~Ll~~i~~Lq~~l~ 207 (240)
.-..+...+....+.|...++
T Consensus 103 ~~~~~l~~~~~e~~sl~~q~~ 123 (314)
T PF04111_consen 103 ELQLELIEFQEERDSLKNQYE 123 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444433
No 23
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=84.98 E-value=23 Score=36.32 Aligned_cols=84 Identities=24% Similarity=0.230 Sum_probs=57.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 026335 97 DANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEA 176 (240)
Q Consensus 97 ~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~ 176 (240)
..+....+.|......+...+...+..|+.|+.+|+.++..-..+. ..-.--..-...|..|+++|.+-..
T Consensus 425 ~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~---------~~~rei~~~~~~I~~L~~~L~e~~~ 495 (652)
T COG2433 425 KKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKV---------RKDREIRARDRRIERLEKELEEKKK 495 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888888889999999988888775433111 1111122335567777777777777
Q ss_pred HHHHHHHHHHHHH
Q 026335 177 ENTAGSRLLELRK 189 (240)
Q Consensus 177 e~~~~~~kl~~Rr 189 (240)
..+.+..+|..=+
T Consensus 496 ~ve~L~~~l~~l~ 508 (652)
T COG2433 496 RVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776433
No 24
>PRK04863 mukB cell division protein MukB; Provisional
Probab=83.32 E-value=44 Score=37.73 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 163 IITDLEKEIAALEAENTAGSRLLELR 188 (240)
Q Consensus 163 ~I~~Le~Ei~~L~~e~~~~~~kl~~R 188 (240)
.+..+...+.+|..........+..-
T Consensus 349 ei~~l~~~LeELee~Lee~eeeLeel 374 (1486)
T PRK04863 349 KIERYQADLEELEERLEEQNEVVEEA 374 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444433333333333333
No 25
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=83.29 E-value=31 Score=30.25 Aligned_cols=107 Identities=10% Similarity=0.069 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 026335 70 DCEKLAKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRK 149 (240)
Q Consensus 70 ~~~~l~e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk 149 (240)
.+.++..++-.+|..+..++.+.-.....-.+++..|.......+.....+-.. ..=..|+.-...|..|...+.
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~-----G~EdLAr~Al~~k~~~~~~~~ 102 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSK-----GREDLARAALIEKQKAQELAE 102 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777777766677777777776666666555444321 122345555556666666655
Q ss_pred HHhcC-----CChHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 150 LIAVQ-----PPRSETQRIITDLEKEIAALEAENTAG 181 (240)
Q Consensus 150 ~I~~~-----PsR~et~~~I~~Le~Ei~~L~~e~~~~ 181 (240)
.+... ..-......|..|+..|..++.....+
T Consensus 103 ~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l 139 (219)
T TIGR02977 103 ALERELAAVEETLAKLQEDIAKLQAKLAEARARQKAL 139 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55421 233444555555555555555555433
No 26
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=82.73 E-value=51 Score=33.87 Aligned_cols=32 Identities=13% Similarity=0.378 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHhc
Q 026335 122 ADIEDLKKQLEESKIERQHK-EECEAIRKLIAV 153 (240)
Q Consensus 122 ~~Ie~LK~eL~~Ak~~R~nK-~EYD~LAk~I~~ 153 (240)
.++.++..+|..|+..+... -.|+.+.+.+..
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~ 269 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADSVKKALQN 269 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666667777666655442 246666665543
No 27
>PRK11637 AmiB activator; Provisional
Probab=82.69 E-value=47 Score=31.89 Aligned_cols=19 Identities=32% Similarity=0.372 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026335 114 NRQTLQAKADIEDLKKQLE 132 (240)
Q Consensus 114 e~~i~~~k~~Ie~LK~eL~ 132 (240)
+.+|..+..+|..++.+|.
T Consensus 102 ~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 102 NKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 28
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=82.68 E-value=81 Score=34.63 Aligned_cols=106 Identities=21% Similarity=0.341 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 026335 101 REKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEA--IRKLIAVQPPRSETQRIITDLEKEIAALEAEN 178 (240)
Q Consensus 101 rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~--LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~ 178 (240)
.....|.+....+...+..+..++..++.+|..+...+. .|+. +...+...-...+....++.++..+..|....
T Consensus 299 ~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~---~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~ 375 (1201)
T PF12128_consen 299 KLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKK---DYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKH 375 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777788888888888888877766554 5653 55555544444455566677777777777777
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 026335 179 TAGSRLLELRKK----QFALLLHVVDELQNTMEEE 209 (240)
Q Consensus 179 ~~~~~kl~~Rrk----QF~~Ll~~i~~Lq~~l~de 209 (240)
..+.++.+.++. +|......++.-+..+.++
T Consensus 376 ~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~~~e~ 410 (1201)
T PF12128_consen 376 QDIESKYNKLKQKLEEAFNRQQERLQAQQDEIREE 410 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777765543 5555555555544444433
No 29
>PRK09343 prefoldin subunit beta; Provisional
Probab=82.32 E-value=24 Score=28.32 Aligned_cols=58 Identities=14% Similarity=0.059 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 141 KEECEAIRKLIAVQP---PRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHV 198 (240)
Q Consensus 141 K~EYD~LAk~I~~~P---sR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~ 198 (240)
-.-|-.+..+....| .+.+....++-++.+|..|+.....+..++..-..+|..++..
T Consensus 54 ~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 54 TPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred chhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777777764 3556677778888888888888888888888777777776654
No 30
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=82.30 E-value=81 Score=34.40 Aligned_cols=90 Identities=21% Similarity=0.290 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHH---------------HHHhHHHHHHHHHHHhcC---------CChHHHHHHHHHHHHHHHHHHH
Q 026335 121 KADIEDLKKQLEESKI---------------ERQHKEECEAIRKLIAVQ---------PPRSETQRIITDLEKEIAALEA 176 (240)
Q Consensus 121 k~~Ie~LK~eL~~Ak~---------------~R~nK~EYD~LAk~I~~~---------PsR~et~~~I~~Le~Ei~~L~~ 176 (240)
..+|+.++..|...+. .++-|..||.+-+.|..+ |-+.+-+..++.|+++++.++.
T Consensus 336 d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~ 415 (1074)
T KOG0250|consen 336 DEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEE 415 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666655555 677788999999999743 4556666666666666666655
Q ss_pred HHHHHHHHHHH-----HHHH--HHHHHHHHHHHHHHHHHHh
Q 026335 177 ENTAGSRLLEL-----RKKQ--FALLLHVVDELQNTMEEEQ 210 (240)
Q Consensus 177 e~~~~~~kl~~-----RrkQ--F~~Ll~~i~~Lq~~l~de~ 210 (240)
....+..+++. +..+ -..+-.-+..|++.|+...
T Consensus 416 ~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~ 456 (1074)
T KOG0250|consen 416 QINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENIS 456 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555444432 1111 1124455556666666443
No 31
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=81.53 E-value=61 Score=32.92 Aligned_cols=71 Identities=17% Similarity=0.168 Sum_probs=45.3
Q ss_pred HHHHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHH
Q 026335 75 AKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQ-HKEECEA 146 (240)
Q Consensus 75 ~e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~-nK~EYD~ 146 (240)
++.+..+|..+.....+... ......+++.+......+...+.....++..++.++..++..+. .+..|..
T Consensus 184 ~~~L~~dl~~~~~~~~~~~~-~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~ 255 (650)
T TIGR03185 184 IDRLAGDLTNVLRRRKKSEL-PSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRS 255 (650)
T ss_pred HHHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677666554444333 33445677777777777777888888888888888887765443 3333443
No 32
>PRK03918 chromosome segregation protein; Provisional
Probab=79.86 E-value=80 Score=32.75 Aligned_cols=78 Identities=22% Similarity=0.284 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHH
Q 026335 102 EKENFNELKEEINRQTLQAKADIEDLKKQLEESKI----ERQHKEECEAIRKLIAVQPP-RSETQRIITDLEKEIAALEA 176 (240)
Q Consensus 102 E~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~----~R~nK~EYD~LAk~I~~~Ps-R~et~~~I~~Le~Ei~~L~~ 176 (240)
.+..+......+..++.....++..++.++...+. ....+.+|+.+.+.+...-. .......|..++.++..+..
T Consensus 194 ~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~ 273 (880)
T PRK03918 194 LIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKK 273 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666777777777777776666543 34555566666555554322 22223334444444444444
Q ss_pred HHH
Q 026335 177 ENT 179 (240)
Q Consensus 177 e~~ 179 (240)
+..
T Consensus 274 ~l~ 276 (880)
T PRK03918 274 EIE 276 (880)
T ss_pred HHH
Confidence 433
No 33
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=79.11 E-value=33 Score=27.85 Aligned_cols=48 Identities=19% Similarity=0.269 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 159 ETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTM 206 (240)
Q Consensus 159 et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l 206 (240)
.....+..|+.++.+|......+-.-+-++-.+-.-|=.=|.+|+.+.
T Consensus 65 ~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 65 ALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666655444444445444444444444444433
No 34
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=78.74 E-value=35 Score=27.98 Aligned_cols=98 Identities=24% Similarity=0.294 Sum_probs=63.6
Q ss_pred HHHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHH---HH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 026335 76 KAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEI---NR---QTLQAKADIEDLKKQLEESKIERQHKEECEAIRK 149 (240)
Q Consensus 76 e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~I---e~---~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk 149 (240)
..+..+|.++|.....+. ..|-..|+..+..- +. +-...+..|++.=..|..-..+|=+|-+|..|++
T Consensus 23 ~~v~~~l~~LEae~q~L~------~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk 96 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQLE------QKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLK 96 (126)
T ss_dssp HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 346667777777665533 34444444333332 22 3345667788888888888899999999999987
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 150 LIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELR 188 (240)
Q Consensus 150 ~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~R 188 (240)
.... -...|+++|+..+.....++.-...|
T Consensus 97 ~y~~---------~~~~L~k~I~~~e~iI~~fe~i~~~~ 126 (126)
T PF09403_consen 97 KYKD---------LLNKLDKEIAEQEQIIDNFEKIQSLR 126 (126)
T ss_dssp HHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH---------HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6543 45677777777777666665544433
No 35
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=77.65 E-value=21 Score=36.87 Aligned_cols=43 Identities=16% Similarity=0.297 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 166 DLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEE 208 (240)
Q Consensus 166 ~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~d 208 (240)
.|+..+..|....+.+....+.|+++|..+.+.|+.|...|-.
T Consensus 100 tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g 142 (660)
T KOG4302|consen 100 TLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGG 142 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7888888888888889999999999999999999999987753
No 36
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.55 E-value=59 Score=32.08 Aligned_cols=108 Identities=19% Similarity=0.301 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHH-HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 104 ENFNELKEEINRQTLQAKADIEDLKKQLEESK--IERQHKEECE-AIRKLIAVQPPRSETQRIITDLEKEIAALEAENTA 180 (240)
Q Consensus 104 e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak--~~R~nK~EYD-~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~ 180 (240)
.+|.+.+.+....+.....+|..|+.-|..++ .-..|-+.|- ..+++.++. .--.+++|++|......
T Consensus 103 ~~leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrel---------v~pmekeI~elk~kl~~ 173 (542)
T KOG0993|consen 103 QNLEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLREL---------VTPMEKEINELKKKLAK 173 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHH---------HhhHHHHHHHHHHHHHh
Confidence 35888888888888888899999988887743 3333333331 222333322 11234555555555544
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhc
Q 026335 181 GSRLLE---LRKKQFALLLHVVDELQNTMEEEQKNLIEEMRMAEEQK 224 (240)
Q Consensus 181 ~~~kl~---~RrkQF~~Ll~~i~~Lq~~l~de~~~~~~e~~~~~~~~ 224 (240)
.+.+++ .+..+++-=+|.+.+|-...+|- ++-++-.++++
T Consensus 174 aE~~i~El~k~~~h~a~slh~~t~lL~L~RD~----s~~l~~leel~ 216 (542)
T KOG0993|consen 174 AEQRIDELSKAKHHKAESLHVFTDLLNLARDK----SEQLRQLEELD 216 (542)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHhcCC----chhhhHHHHhc
Confidence 444444 34445566677777777766643 33445455444
No 37
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=76.88 E-value=1.3e+02 Score=33.44 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=17.7
Q ss_pred CCCcccccCCCCCCCCCCCCCCCCChhHHHH
Q 026335 1 MLAKGRKVPGRAETVPVNYAFGPHEDDVIIK 31 (240)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~l~~~~edeiIk 31 (240)
|.+-|.+|.|. .|+..-..++.+.+++=+
T Consensus 754 mtGGG~~v~~g--~mg~~~~~t~~s~~~v~~ 782 (1293)
T KOG0996|consen 754 MTGGGKKVKGG--RMGTSIRVTGVSKESVEK 782 (1293)
T ss_pred ccCCCCcCCCC--CCCCccccCCCCHHHHHH
Confidence 55666777665 666666566666655533
No 38
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=76.86 E-value=27 Score=32.44 Aligned_cols=21 Identities=29% Similarity=0.215 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026335 159 ETQRIITDLEKEIAALEAENT 179 (240)
Q Consensus 159 et~~~I~~Le~Ei~~L~~e~~ 179 (240)
+...++..+..+|++++....
T Consensus 248 ~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 248 ELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666654443
No 39
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=76.28 E-value=39 Score=27.24 Aligned_cols=47 Identities=21% Similarity=0.194 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 159 ETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNT 205 (240)
Q Consensus 159 et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~ 205 (240)
.....+.-|++.+..|......+...+..=++++..+...+++|...
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678889999999999999999999999999999999999888753
No 40
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=74.45 E-value=1e+02 Score=31.25 Aligned_cols=96 Identities=13% Similarity=0.186 Sum_probs=49.4
Q ss_pred cchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHhcCCChHHHHH
Q 026335 85 FEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQ--HKEECEAIRKLIAVQPPRSETQR 162 (240)
Q Consensus 85 ~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~--nK~EYD~LAk~I~~~PsR~et~~ 162 (240)
|+..+....-+.+-..+++..|+.....+..++...+..-+..-..+..++.... ...-.+.-|+...-.......+.
T Consensus 90 ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~ 169 (546)
T KOG0977|consen 90 YEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALED 169 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 4455555555666666666666666667777777666666666555555554433 11111222222222233444444
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026335 163 IITDLEKEIAALEAENTA 180 (240)
Q Consensus 163 ~I~~Le~Ei~~L~~e~~~ 180 (240)
.+..|++|+..|..+...
T Consensus 170 e~~~Lk~en~rl~~~l~~ 187 (546)
T KOG0977|consen 170 ELKRLKAENSRLREELAR 187 (546)
T ss_pred HHHHHHHHhhhhHHHHHH
Confidence 555555555444444433
No 41
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=74.22 E-value=69 Score=29.08 Aligned_cols=60 Identities=22% Similarity=0.202 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Q 026335 159 ETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEEQKNLIEEMR 218 (240)
Q Consensus 159 et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~de~~~~~~e~~ 218 (240)
.....+..++..+..|..+...+......=.++-..+...+..+...+.+.......+++
T Consensus 93 aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~ 152 (239)
T COG1579 93 ALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVA 152 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333344444444444444444444444433333
No 42
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=73.02 E-value=1.2e+02 Score=31.42 Aligned_cols=115 Identities=19% Similarity=0.242 Sum_probs=85.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHhcCCC-hHHHHHHHHHHHHHHH
Q 026335 98 ANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKE----ECEAIRKLIAVQPP-RSETQRIITDLEKEIA 172 (240)
Q Consensus 98 aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~----EYD~LAk~I~~~Ps-R~et~~~I~~Le~Ei~ 172 (240)
.=-.+...+..+...+......++..|++.-..|..++..+..=. .|..+...|..+.+ .......|..|+.++.
T Consensus 172 ~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~ 251 (670)
T KOG0239|consen 172 LALKESLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELE 251 (670)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 445677788888888888899999999988888888555554333 37778888887754 5566666899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026335 173 ALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEEQKN 212 (240)
Q Consensus 173 ~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~de~~~ 212 (240)
.|+.....+......=.+-|...+..+..++..+.+....
T Consensus 252 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 291 (670)
T KOG0239|consen 252 ELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEEN 291 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888887777776666777777777766666544433
No 43
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=72.95 E-value=34 Score=25.06 Aligned_cols=26 Identities=23% Similarity=0.380 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 104 ENFNELKEEINRQTLQAKADIEDLKK 129 (240)
Q Consensus 104 e~Y~~~~~~Ie~~i~~~k~~Ie~LK~ 129 (240)
..|-.....|...|..++..+..+..
T Consensus 3 ~~f~~~v~~i~~~i~~i~~~~~~l~~ 28 (103)
T PF00804_consen 3 PEFFDEVQEIREDIDKIKEKLNELRK 28 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666554
No 44
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=72.17 E-value=67 Score=28.04 Aligned_cols=107 Identities=18% Similarity=0.299 Sum_probs=66.3
Q ss_pred HhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHH
Q 026335 82 LSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQ 161 (240)
Q Consensus 82 La~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~ 161 (240)
+.++.-.|.-..--...|.+.+........++-.-+..+..+.+.|+.+|..-...+. .+- .+.
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~---~L~-------------~~k 92 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQ---SLQ-------------NLK 92 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-------------HHH
Confidence 3344444555556677788888888888888888888888888888888876443322 221 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 026335 162 RIITDLEKEIAALEAENTAGSRLLE----LRKKQFALLLHVVDELQN 204 (240)
Q Consensus 162 ~~I~~Le~Ei~~L~~e~~~~~~kl~----~RrkQF~~Ll~~i~~Lq~ 204 (240)
..+..++++|..|+-+.+.+...+. +|..-...+-.+|++.+.
T Consensus 93 ~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQ 139 (201)
T PF13851_consen 93 ARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQ 139 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555544444333 455555566666666664
No 45
>PRK10884 SH3 domain-containing protein; Provisional
Probab=71.64 E-value=71 Score=28.14 Aligned_cols=12 Identities=8% Similarity=0.324 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 026335 166 DLEKEIAALEAE 177 (240)
Q Consensus 166 ~Le~Ei~~L~~e 177 (240)
.|+.+++.++.+
T Consensus 143 ~L~~~l~~~~~~ 154 (206)
T PRK10884 143 KLKNQLIVAQKK 154 (206)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 46
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=71.16 E-value=12 Score=37.73 Aligned_cols=43 Identities=26% Similarity=0.245 Sum_probs=36.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 132 EESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLE 186 (240)
Q Consensus 132 ~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~ 186 (240)
+.|.+-|+.|+||+. ..+.+|.+|.+|.+.|++|+.++.+.|.
T Consensus 291 esA~~SRkKKKEy~~------------~Le~rLq~ll~Ene~Lk~ENatLk~qL~ 333 (655)
T KOG4343|consen 291 ESACQSRKKKKEYML------------GLEARLQALLSENEQLKKENATLKRQLD 333 (655)
T ss_pred HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 568888999999996 5678999999999999999988866554
No 47
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=71.01 E-value=1.2e+02 Score=30.68 Aligned_cols=49 Identities=22% Similarity=0.337 Sum_probs=24.1
Q ss_pred cchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 85 FEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEE 133 (240)
Q Consensus 85 ~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~ 133 (240)
+...+.+.+.-......+.+......+.+....+.+..+++.|+.++..
T Consensus 169 l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e 217 (546)
T PF07888_consen 169 LREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAE 217 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444455555555555555555555555555555544
No 48
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=70.48 E-value=1.3e+02 Score=30.70 Aligned_cols=107 Identities=19% Similarity=0.243 Sum_probs=53.5
Q ss_pred cchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC----------
Q 026335 85 FEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQ---------- 154 (240)
Q Consensus 85 ~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~---------- 154 (240)
++--+.|.+.....+.-=.+.|...-..+..+|+..-.+|+.++.+ -|.|-+.|..+
T Consensus 271 L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~-------------~d~Lk~~Ie~Q~iS~~dve~m 337 (581)
T KOG0995|consen 271 LQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKE-------------NDELKKQIELQGISGEDVERM 337 (581)
T ss_pred HHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHhcCCCHHHHHHH
Confidence 4444555555555555555555555555555555555555555443 34444444432
Q ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 155 -PPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTME 207 (240)
Q Consensus 155 -PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~ 207 (240)
-.|.+....+.+++.++..|..+--......+ .+|+.|...+.++-..++
T Consensus 338 n~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~---~~f~~le~~~~~~~~l~~ 388 (581)
T KOG0995|consen 338 NLERNKLKRELNKIQSELDRLSKEVWELKLEIE---DFFKELEKKFIDLNSLIR 388 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 23334444444444444444433333322222 567777666666666555
No 49
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=69.66 E-value=1.8e+02 Score=32.04 Aligned_cols=143 Identities=23% Similarity=0.305 Sum_probs=77.8
Q ss_pred HHHhhhccCCCCCCCchHHHHHHHHHH--------hhhhcCCCCCChhHHHHHHHHHHHHHhccchhhhhHHHHHHHhHH
Q 026335 30 IKHRLLTRTTTTRGEPPLKKLQKKFTS--------FVLEIEKDEDNNNDCEKLAKAFLQELSTFEIPLLKSKAVIDANLR 101 (240)
Q Consensus 30 Ik~RLL~dg~~~gderpLkrL~Kkf~~--------~~~~~~~~~d~~~~~~~l~e~~l~eLa~~E~s~~K~~~v~~aN~r 101 (240)
|+++|-.. +...+.|.++.-+ ||..+...--.+.. ..+.+.|......|+-.+.|...-.+--..
T Consensus 730 i~r~l~~~------e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee-~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~ 802 (1141)
T KOG0018|consen 730 IKRKLQNR------EGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEE-RELQQEFAKKRLEFENQKAKLENQLDFEKQ 802 (1141)
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhheec
Confidence 44455444 4555665555443 55554322111222 122566666666677666665433222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 102 EKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAG 181 (240)
Q Consensus 102 E~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~ 181 (240)
..-+.-..+++..++....+|+.++. .-+++++.|.+. ++ +++ ++ ......+
T Consensus 803 --~d~~~~ve~~~~~v~~~~~~~~~~~~-------------~e~~~~k~i~e~---~~----~e~--k~----k~~~~~~ 854 (1141)
T KOG0018|consen 803 --KDTQRRVERWERSVEDLEKEIEGLKK-------------DEEAAEKIIAEI---EE----LEK--KN----KSKFEKK 854 (1141)
T ss_pred --ccHHHHHHHHHHHHHHHHHhHHhhHH-------------HHHHHHHHHhhH---HH----HHH--HH----HHHHHHH
Confidence 22233334444555555555555544 234455556554 11 111 11 5566778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 182 SRLLELRKKQFALLLHVVDELQNTME 207 (240)
Q Consensus 182 ~~kl~~RrkQF~~Ll~~i~~Lq~~l~ 207 (240)
...|..=+++|..++..++.|.+.|.
T Consensus 855 ~~e~~e~~k~~~~~~~~~tkl~~~i~ 880 (1141)
T KOG0018|consen 855 EDEINEVKKILRRLVKELTKLDKEIT 880 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 88899999999999999999998876
No 50
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=69.65 E-value=1.2e+02 Score=30.14 Aligned_cols=84 Identities=18% Similarity=0.183 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q 026335 118 LQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLE----LRKKQFA 193 (240)
Q Consensus 118 ~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~----~RrkQF~ 193 (240)
+..+..-++-+..|+.++. +-+.+|..||..|-+..++.=+..+-+.|..=+.=|++....+..+++ .|.+.++
T Consensus 91 e~~~~~~~ek~~~l~~~~~--~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~ 168 (475)
T PRK10361 91 EAAQQHADDKIRQMINSEQ--RLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERH 168 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444555544 356799999999998887776666666666666666666655555555 4667788
Q ss_pred HHHHHHHHHH
Q 026335 194 LLLHVVDELQ 203 (240)
Q Consensus 194 ~Ll~~i~~Lq 203 (240)
.|-+.|..|.
T Consensus 169 ~L~~qi~~L~ 178 (475)
T PRK10361 169 TLAHEIRNLQ 178 (475)
T ss_pred HHHHHHHHHH
Confidence 8877666665
No 51
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=69.15 E-value=2.3e+02 Score=33.11 Aligned_cols=136 Identities=17% Similarity=0.234 Sum_probs=70.8
Q ss_pred HHHHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHhc
Q 026335 75 AKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKE-ECEAIRKLIAV 153 (240)
Q Consensus 75 ~e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~-EYD~LAk~I~~ 153 (240)
...+...-...+..+....--..-+..+...-+.....++.+|...+..|.++-..+..+........ +-..|-+.|+.
T Consensus 896 ~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~ 975 (1930)
T KOG0161|consen 896 LERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINS 975 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444555555555555555555555444444333222111 12222233332
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHH
Q 026335 154 QPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEEQKNLIEE 216 (240)
Q Consensus 154 ~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~de~~~~~~e 216 (240)
....+++|.++-..+++....+...+...++.-+-+-.....|..+|++-......+
T Consensus 976 ------~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e 1032 (1930)
T KOG0161|consen 976 ------LDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLERE 1032 (1930)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666667777777777777777777666666666666666544444433
No 52
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.98 E-value=97 Score=28.60 Aligned_cols=73 Identities=22% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 026335 97 DANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEA 176 (240)
Q Consensus 97 ~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~ 176 (240)
..+..++.+-......|+.+|.....+|+.+-......+.. -.++...|.+|+.+|+.++.
T Consensus 34 ~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~-------------------i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 34 QNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKE-------------------IDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 026335 177 ENTAGSRLLELR 188 (240)
Q Consensus 177 e~~~~~~kl~~R 188 (240)
....-...|..|
T Consensus 95 ~I~~r~~~l~~r 106 (265)
T COG3883 95 NIVERQELLKKR 106 (265)
T ss_pred HHHHHHHHHHHH
No 53
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=68.91 E-value=53 Score=26.68 Aligned_cols=58 Identities=22% Similarity=0.225 Sum_probs=27.2
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 147 IRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQN 204 (240)
Q Consensus 147 LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~ 204 (240)
+-..|...|+-.+....++.+..+...|-..+-.....+...|.+....+..+..|..
T Consensus 19 l~~~v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~ 76 (150)
T PF07200_consen 19 LDAFVKSLPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELES 76 (150)
T ss_dssp HHHHGGGGS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555566555555555555555555555545555555555544444444444443
No 54
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=68.42 E-value=41 Score=25.22 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 117 TLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQP----PRSETQRIITDLEKEIAALEAENTAGS 182 (240)
Q Consensus 117 i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~P----sR~et~~~I~~Le~Ei~~L~~e~~~~~ 182 (240)
...+-..+..+|..|..||.. |...| |-++++..|+.|+.+++....-...|.
T Consensus 23 ~kd~~~~~~~lk~Klq~ar~~-------------i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~ 79 (83)
T PF07544_consen 23 SKDLDTATGSLKHKLQKARAA-------------IRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFK 79 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777788888877765 66776 566777777777777766655554443
No 55
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=68.14 E-value=22 Score=29.29 Aligned_cols=37 Identities=30% Similarity=0.319 Sum_probs=25.6
Q ss_pred HHhcCCC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 150 LIAVQPP----RSETQRIITDLEKEIAALEAENTAGSRLLE 186 (240)
Q Consensus 150 ~I~~~Ps----R~et~~~I~~Le~Ei~~L~~e~~~~~~kl~ 186 (240)
+|.++|. .+++.+.|..|+.|+.....+....-..-+
T Consensus 88 LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e 128 (144)
T PF11221_consen 88 LIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAE 128 (144)
T ss_dssp HHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888995 667777888888887777766554444433
No 56
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=67.80 E-value=1.4e+02 Score=29.98 Aligned_cols=107 Identities=19% Similarity=0.235 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhHHHHHHHHHHHhcC-CChHHHHHHHHHH
Q 026335 100 LREKENFNELKEEINRQTLQAKADIEDLKKQLE-----------ESKIERQHKEECEAIRKLIAVQ-PPRSETQRIITDL 167 (240)
Q Consensus 100 ~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~-----------~Ak~~R~nK~EYD~LAk~I~~~-PsR~et~~~I~~L 167 (240)
..........-..+......+..+|..++.... -.+....-...|+.+-..|+.. .+-++....+..+
T Consensus 309 ek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel 388 (569)
T PRK04778 309 EKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEI 388 (569)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 333334444444455555555555555555511 1222334445677777777764 5588999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 168 EKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTM 206 (240)
Q Consensus 168 e~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l 206 (240)
.+.+..++.++..+...+..=++.-...-..+..++..+
T Consensus 389 ~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L 427 (569)
T PRK04778 389 LKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKL 427 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988888865554444434444444333
No 57
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=67.74 E-value=1.9e+02 Score=31.60 Aligned_cols=103 Identities=18% Similarity=0.256 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHH
Q 026335 102 EKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQ-HKEECEAIRKLIAV-QPPRSETQRIITDLEKEIAALEAENT 179 (240)
Q Consensus 102 E~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~-nK~EYD~LAk~I~~-~PsR~et~~~I~~Le~Ei~~L~~e~~ 179 (240)
..+.+......+..++.....++..++.++...+..+. ....+..+-..|.. .|...++...++.+..+|..|.....
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (1163)
T COG1196 377 LFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLE 456 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 33455555555666666666666666666665444322 23334444444433 24444455555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 180 AGSRLLELRKKQFALLLHVVDELQN 204 (240)
Q Consensus 180 ~~~~kl~~RrkQF~~Ll~~i~~Lq~ 204 (240)
.+...+..-..-+..+...+..+..
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1163)
T COG1196 457 ELRDRLKELERELAELQEELQRLEK 481 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555444444444444444444443
No 58
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=67.72 E-value=2.5e+02 Score=32.90 Aligned_cols=131 Identities=23% Similarity=0.331 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHH
Q 026335 71 CEKLAKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESK-IERQHKEECEAIRK 149 (240)
Q Consensus 71 ~~~l~e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak-~~R~nK~EYD~LAk 149 (240)
.++++.++..++..+.+...+...++..-...+.+|..+-.+..........++.....++.... ..++.+..|+.+..
T Consensus 1405 Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e 1484 (1930)
T KOG0161|consen 1405 LEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLE 1484 (1930)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34456677777777777777776666666666666666665555555555555555444444332 23445556666655
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 150 LIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTME 207 (240)
Q Consensus 150 ~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~ 207 (240)
.+ ++....-..+..+|.+|..........+....+--..+-..+.+||..|+
T Consensus 1485 ~~------e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLe 1536 (1930)
T KOG0161|consen 1485 QL------EELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALE 1536 (1930)
T ss_pred HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 23333344444455555555555555554444444555555555555554
No 59
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=67.51 E-value=1.5e+02 Score=30.30 Aligned_cols=117 Identities=21% Similarity=0.305 Sum_probs=63.8
Q ss_pred HHHHHHHHhccchhhhhHHHHHHHhHHHHH---------------HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 026335 75 AKAFLQELSTFEIPLLKSKAVIDANLREKE---------------NFNELKEEIN---RQTLQAKADIEDLKKQLEESKI 136 (240)
Q Consensus 75 ~e~~l~eLa~~E~s~~K~~~v~~aN~rE~e---------------~Y~~~~~~Ie---~~i~~~k~~Ie~LK~eL~~Ak~ 136 (240)
......-|..-+-.|.|++.+++++..-+. .|..++.... .++..--.+|..++.+......
T Consensus 382 ~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~ 461 (594)
T PF05667_consen 382 KKKTVELLPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEE 461 (594)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455567788888888877765443 3444443222 2222223444445555444444
Q ss_pred HHHhHHH-HHHHHHHHhcC---CChH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 137 ERQHKEE-CEAIRKLIAVQ---PPRS--------------ETQRIITDLEKEIAALEAENTAGSRLLELRKKQFAL 194 (240)
Q Consensus 137 ~R~nK~E-YD~LAk~I~~~---PsR~--------------et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~ 194 (240)
.-+.|++ |-.|-....+. ++|. -+...|.++-.+...|+.+...+..+|+ .+|.+
T Consensus 462 e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~---RtF~v 534 (594)
T PF05667_consen 462 EIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLD---RTFTV 534 (594)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHH
Confidence 4444432 33333333222 3444 4556677777778888888888888887 45544
No 60
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=66.73 E-value=1.1e+02 Score=33.34 Aligned_cols=88 Identities=19% Similarity=0.237 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHH
Q 026335 99 NLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIER-QHKEECEAIRKLIAVQ-PPRSETQRIITDLEKEIAALEA 176 (240)
Q Consensus 99 N~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R-~nK~EYD~LAk~I~~~-PsR~et~~~I~~Le~Ei~~L~~ 176 (240)
-.-+.+..+..+.+|-..+...+.++...|.++.+|+... +|+.+.+.+|.-|... =+.+=.+..-+.|+.|++.+++
T Consensus 260 mkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkE 339 (1243)
T KOG0971|consen 260 MKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 339 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888899999999999999999999999998765 7899999999998743 2333334444555555555555
Q ss_pred HHHHHHHHHH
Q 026335 177 ENTAGSRLLE 186 (240)
Q Consensus 177 e~~~~~~kl~ 186 (240)
..+.++--|+
T Consensus 340 r~deletdlE 349 (1243)
T KOG0971|consen 340 RVDELETDLE 349 (1243)
T ss_pred HHHHHHHHHH
Confidence 5555544444
No 61
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=66.69 E-value=1.5e+02 Score=30.06 Aligned_cols=82 Identities=22% Similarity=0.349 Sum_probs=46.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHH-------HHHHHHhcCC-ChHHHHHHHHHH
Q 026335 97 DANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIER-QHKEECE-------AIRKLIAVQP-PRSETQRIITDL 167 (240)
Q Consensus 97 ~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R-~nK~EYD-------~LAk~I~~~P-sR~et~~~I~~L 167 (240)
+-+.+|.+.-......++.+....+.++..|+.+|..++..- +.+.++. .+...+..+- ...+....|..|
T Consensus 146 E~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~L 225 (546)
T PF07888_consen 146 EECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIREL 225 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777777777777777777776655422 1122222 2222222222 245556666666
Q ss_pred HHHHHHHHHHH
Q 026335 168 EKEIAALEAEN 178 (240)
Q Consensus 168 e~Ei~~L~~e~ 178 (240)
+.+|..+....
T Consensus 226 Eedi~~l~qk~ 236 (546)
T PF07888_consen 226 EEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHH
Confidence 66666665544
No 62
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=66.09 E-value=63 Score=25.41 Aligned_cols=43 Identities=19% Similarity=0.106 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 158 SETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVD 200 (240)
Q Consensus 158 ~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~ 200 (240)
......+.-|++.+..|......+...+..-++|+..+...++
T Consensus 82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888999999999999999999999999999988877654
No 63
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=65.83 E-value=50 Score=28.06 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026335 160 TQRIITDLEKEIAALEA 176 (240)
Q Consensus 160 t~~~I~~Le~Ei~~L~~ 176 (240)
.+..++.|+++++.+..
T Consensus 173 ~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 173 KEKEIEALKKQSEGLQK 189 (192)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444555555555443
No 64
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=65.63 E-value=1.1e+02 Score=28.21 Aligned_cols=81 Identities=14% Similarity=0.172 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHH
Q 026335 100 LREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQH----KEECEAIRKLIAVQ-PPRSETQRIITDLEKEIAAL 174 (240)
Q Consensus 100 ~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~n----K~EYD~LAk~I~~~-PsR~et~~~I~~Le~Ei~~L 174 (240)
..++..|......++..+..++.++..++..+...+..... +.+|+..-..+... -........|..++.++..+
T Consensus 150 ~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~ 229 (423)
T TIGR01843 150 LAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQIDEL 229 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555555555444444442 55666544444332 34555555666666666655
Q ss_pred HHHHHH
Q 026335 175 EAENTA 180 (240)
Q Consensus 175 ~~e~~~ 180 (240)
......
T Consensus 230 ~~~~~~ 235 (423)
T TIGR01843 230 QLERQQ 235 (423)
T ss_pred HHHHHH
Confidence 544433
No 65
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=65.45 E-value=1.1e+02 Score=31.78 Aligned_cols=91 Identities=21% Similarity=0.247 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC------C------ChHHHHHHHHHHHHHHHHHHHHHH
Q 026335 112 EINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQ------P------PRSETQRIITDLEKEIAALEAENT 179 (240)
Q Consensus 112 ~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~------P------sR~et~~~I~~Le~Ei~~L~~e~~ 179 (240)
.|...+..+...++.++.+..+.+ .+.+.-|+.+.+++... | ..+-+...++.+...|..|+.+
T Consensus 100 tLke~l~~l~~~le~lr~qk~eR~--~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~e-- 175 (660)
T KOG4302|consen 100 TLKEQLESLKPYLEGLRKQKDERR--AEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKE-- 175 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHH--
Confidence 566677777777777777765544 45677888887777642 2 2344556666666666666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026335 180 AGSRLLELRKKQFALLLHVVDELQNTMEEEQK 211 (240)
Q Consensus 180 ~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~de~~ 211 (240)
-..|.+.+.-+..+|+.|+..|.-+=.
T Consensus 176 -----k~~Rlekv~~~~~~I~~l~~~Lg~~~~ 202 (660)
T KOG4302|consen 176 -----KSDRLEKVLELKEEIKSLCSVLGLDFS 202 (660)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 467888899999999999988874444
No 66
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=65.36 E-value=98 Score=27.32 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 160 TQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNT 205 (240)
Q Consensus 160 t~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~ 205 (240)
....+..+..++...+.....+...+..||.+.-..+..|--++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI~~~ 162 (302)
T PF10186_consen 117 RQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELSEIFPIEQV 162 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceee
Confidence 3445666777777777777778888888888776666666655443
No 67
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.12 E-value=1.1e+02 Score=27.82 Aligned_cols=111 Identities=16% Similarity=0.246 Sum_probs=56.1
Q ss_pred CCCCChhHHHHHhhhccCCCCCCCchHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHhccchhhhhHHHHHHHhH
Q 026335 21 FGPHEDDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVLEIEKDEDNNNDCEKLAKAFLQELSTFEIPLLKSKAVIDANL 100 (240)
Q Consensus 21 l~~~~edeiIk~RLL~dg~~~gderpLkrL~Kkf~~~~~~~~~~~d~~~~~~~l~e~~l~eLa~~E~s~~K~~~v~~aN~ 100 (240)
++.....+|+..|..+|.-- .+ |.++.+-....|+... +..++..+.+...|..++-.|.+..-+
T Consensus 16 l~d~~~~~i~n~~s~~D~f~--q~-~r~~~~nS~~efar~l-------S~~~~e~e~l~~~l~etene~~~~neL----- 80 (246)
T KOG4657|consen 16 LGDICEKDIHNQRSKIDSFI--QS-PRRRSMNSLVEFARAL-------SQSQVELENLKADLRETENELVKVNEL----- 80 (246)
T ss_pred hHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 55667788888888877211 11 1223222222233221 111112344555555555555543211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 026335 101 REKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQ 154 (240)
Q Consensus 101 rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~ 154 (240)
.+.=...+..|+++|...+.+++.+...+ ...+.|||-.-.+|.+.
T Consensus 81 --~~ek~~~q~~ieqeik~~q~elEvl~~n~------Q~lkeE~dd~keiIs~k 126 (246)
T KOG4657|consen 81 --KTEKEARQMGIEQEIKATQSELEVLRRNL------QLLKEEKDDSKEIISQK 126 (246)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhhHHHHHHHH
Confidence 12223445566777777766666665443 34567888777777643
No 68
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=65.12 E-value=73 Score=29.09 Aligned_cols=16 Identities=31% Similarity=0.488 Sum_probs=6.7
Q ss_pred HHHHHHHHhccchhhh
Q 026335 75 AKAFLQELSTFEIPLL 90 (240)
Q Consensus 75 ~e~~l~eLa~~E~s~~ 90 (240)
+..|+..-...+-+|.
T Consensus 178 L~~fl~~~~~~~~~il 193 (297)
T PF02841_consen 178 LQEFLQSKESMENSIL 193 (297)
T ss_dssp HHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445544333333333
No 69
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=64.83 E-value=92 Score=26.86 Aligned_cols=72 Identities=21% Similarity=0.150 Sum_probs=43.5
Q ss_pred hHHHHHHHHHH-hhhhcCCCCCChhHHHHHHHHHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 026335 46 PLKKLQKKFTS-FVLEIEKDEDNNNDCEKLAKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQA 120 (240)
Q Consensus 46 pLkrL~Kkf~~-~~~~~~~~~d~~~~~~~l~e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~ 120 (240)
+|+++++-++. |+.... +| ...+++...++-..|..+.-++.+.........+++..+.......+.....+
T Consensus 5 Rl~~~~~a~~~~~ld~~E-DP--~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~A 77 (221)
T PF04012_consen 5 RLKTLVKANINELLDKAE-DP--EKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELA 77 (221)
T ss_pred HHHHHHHHHHHHHHHhhc-CH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555444 333321 22 24445556667777777777777777777777777777777666666666554
No 70
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=62.99 E-value=98 Score=26.54 Aligned_cols=46 Identities=17% Similarity=0.191 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 162 RIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTME 207 (240)
Q Consensus 162 ~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~ 207 (240)
..+..|+..+..|+.+...+...+..=..-+..|+..+..-++++-
T Consensus 111 ~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~~ 156 (161)
T TIGR02894 111 NQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLAV 156 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555555555555556677778887777777553
No 71
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=62.95 E-value=75 Score=32.77 Aligned_cols=44 Identities=18% Similarity=0.357 Sum_probs=34.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 94 AVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIE 137 (240)
Q Consensus 94 ~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~ 137 (240)
.|...-..|+.+.+..++++..+|++....|++||..+..+|..
T Consensus 86 RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~e 129 (907)
T KOG2264|consen 86 RILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLE 129 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHH
Confidence 45555566777777888888888999999999998888877664
No 72
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=62.74 E-value=1.1e+02 Score=27.24 Aligned_cols=142 Identities=18% Similarity=0.171 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHhhhhc-CCCCCChhHHHHHHHHHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 46 PLKKLQKKFTSFVLEI-EKDEDNNNDCEKLAKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADI 124 (240)
Q Consensus 46 pLkrL~Kkf~~~~~~~-~~~~d~~~~~~~l~e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~I 124 (240)
+|+++.+-|...+|.. +.-+|....+++...++-.+|....-.+.+.-.....-.++...-.......+.....+-.
T Consensus 3 i~~r~~~~~~a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~-- 80 (225)
T COG1842 3 IFSRLKDLVKANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQ-- 80 (225)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 4555555444444443 1112223445566677777777777776665555544455544444444444443333221
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhcC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 125 EDLKKQLEESKIERQHKEECEAIRKLIAVQ-----PPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQF 192 (240)
Q Consensus 125 e~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~-----PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF 192 (240)
+..=.-|+.....+..|+..++..... -..+....++..|+..|.+++..+..+...+...+.|=
T Consensus 81 ---~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~ 150 (225)
T COG1842 81 ---AGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQE 150 (225)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111223455555556666655555432 23455566777777777777777777777777665543
No 73
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=62.67 E-value=2.5e+02 Score=31.14 Aligned_cols=112 Identities=12% Similarity=0.189 Sum_probs=57.6
Q ss_pred HHHHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH----------HHHH
Q 026335 75 AKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEI------NRQTLQAKADIEDLKKQLEES----------KIER 138 (240)
Q Consensus 75 ~e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~I------e~~i~~~k~~Ie~LK~eL~~A----------k~~R 138 (240)
...+..++...+..+.+.......-..+++.-..+...+ ..++..++.+|+.|..++... ..+.
T Consensus 753 l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~ 832 (1311)
T TIGR00606 753 LQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQ 832 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHH
Confidence 344444444455445555544444444454444443333 555555555555555554422 2233
Q ss_pred HhHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 139 QHKEECEAIRKLIAVQ-PPRSETQRIITDLEKEIAALEAENTAGSRLLE 186 (240)
Q Consensus 139 ~nK~EYD~LAk~I~~~-PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~ 186 (240)
....+++.+.+.|... -........|..|+..+.++......+...+.
T Consensus 833 ~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~ 881 (1311)
T TIGR00606 833 EKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQ 881 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555443 23444556666666666666666666666555
No 74
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=61.98 E-value=1.4e+02 Score=30.06 Aligned_cols=85 Identities=18% Similarity=0.345 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 121 KADIEDLKKQLEESK-IERQHKEECEAIRKLIAV-QPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHV 198 (240)
Q Consensus 121 k~~Ie~LK~eL~~Ak-~~R~nK~EYD~LAk~I~~-~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~ 198 (240)
..+|++|-.+|+.|. ....+..||.+|.+.... --.+......|..+...|..|++|......=-+ .|+..+-.-
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE---~QLs~MSEH 495 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYE---EQLSMMSEH 495 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHH
Confidence 357888888888888 778888999999998864 345666677777777888888777665555444 788888888
Q ss_pred HHHHHHHHHH
Q 026335 199 VDELQNTMEE 208 (240)
Q Consensus 199 i~~Lq~~l~d 208 (240)
|..|...|..
T Consensus 496 LasmNeqL~~ 505 (518)
T PF10212_consen 496 LASMNEQLAK 505 (518)
T ss_pred HHHHHHHHHH
Confidence 8888877763
No 75
>KOG1510 consensus RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7 [Transcription]
Probab=61.63 E-value=75 Score=26.57 Aligned_cols=56 Identities=23% Similarity=0.150 Sum_probs=42.5
Q ss_pred HHhcCC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 150 LIAVQP----PRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNT 205 (240)
Q Consensus 150 ~I~~~P----sR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~ 205 (240)
+|.++| +-+.+.++|.+|+.++.+...+...+..+=+.=.+|..-++..+-+++-.
T Consensus 75 LIdsLP~~~~~~e~Ql~~i~kLq~en~e~~~el~~~v~~~e~Ll~~vq~~le~~a~~~l~ 134 (139)
T KOG1510|consen 75 LIDSLPGEEGSAEAQLEKIKKLQEENEEVALELEELVSKGEKLLEQVQSLLEDIADLQLN 134 (139)
T ss_pred HHHhCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 588888 46678888999999999988888887777766666666666666665543
No 76
>PRK03918 chromosome segregation protein; Provisional
Probab=61.55 E-value=2.1e+02 Score=29.75 Aligned_cols=11 Identities=18% Similarity=0.274 Sum_probs=4.1
Q ss_pred HHhccchhhhh
Q 026335 81 ELSTFEIPLLK 91 (240)
Q Consensus 81 eLa~~E~s~~K 91 (240)
++..++-.+..
T Consensus 208 ei~~l~~e~~~ 218 (880)
T PRK03918 208 EINEISSELPE 218 (880)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 77
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=60.90 E-value=1.4e+02 Score=27.69 Aligned_cols=60 Identities=23% Similarity=0.162 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Q 026335 160 TQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEEQKNLIEEMRM 219 (240)
Q Consensus 160 t~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~de~~~~~~e~~~ 219 (240)
....|+..++++.+++.+...+...++.-..+-..+...|.++++.++.-..-...|+..
T Consensus 221 ~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~ 280 (325)
T PF08317_consen 221 QKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKR 280 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 345566666667777777777888888888888888888888888877555545555443
No 78
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=60.56 E-value=56 Score=27.41 Aligned_cols=66 Identities=21% Similarity=0.234 Sum_probs=41.1
Q ss_pred HHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 133 ESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVV 199 (240)
Q Consensus 133 ~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i 199 (240)
.++..++-|.|+..+-+..+..-+.+ .=++-.+|++.+..+.+|.+++.......+..|...+..+
T Consensus 38 ~~~~~~~l~~Ei~~l~~E~~~iS~qD-eFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~ 103 (161)
T PF04420_consen 38 SSKEQRQLRKEILQLKRELNAISAQD-EFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKV 103 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-TTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666654444 3345566777777777777777777777777776666554
No 79
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=60.34 E-value=1.1e+02 Score=26.35 Aligned_cols=74 Identities=23% Similarity=0.316 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 117 TLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLL 196 (240)
Q Consensus 117 i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll 196 (240)
....-.+...+...+..-+ +++.+-+.| +.+..++|| ..|..=..+|.+|..|+..+...+++-..-..+||
T Consensus 26 ad~Ll~qa~~l~~~i~sm~---~y~eei~~l-~~~~~~~~~----~~l~~En~qi~~Lq~EN~eL~~~leEhq~alelIM 97 (181)
T PF05769_consen 26 ADSLLSQAEALNKQIESMR---QYQEEIQEL-NELSKNRPR----AGLQQENRQIRQLQQENRELRQSLEEHQSALELIM 97 (181)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHH-HHHhhcccc----hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443322 666666665 445556666 33333445566666666666666655555555554
Q ss_pred HH
Q 026335 197 HV 198 (240)
Q Consensus 197 ~~ 198 (240)
.-
T Consensus 98 ~K 99 (181)
T PF05769_consen 98 SK 99 (181)
T ss_pred HH
Confidence 43
No 80
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=60.03 E-value=2.1e+02 Score=29.32 Aligned_cols=88 Identities=24% Similarity=0.265 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 026335 100 LREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQ--------HKEECEAIRKLIAVQPPRSETQRIITDLEKEI 171 (240)
Q Consensus 100 ~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~--------nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei 171 (240)
..|++.-+..-..+..+|..+..+|..++..+.+...... ...+|....+.+.-.|+.++ +|++|+.-|
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~---ni~kL~~~v 403 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEE---NIAKLQALV 403 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH---HHHHHHHHH
Confidence 3444444455555555555555555555554443322221 22345544444445666544 568888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026335 172 AALEAENTAGSRLLELRKK 190 (240)
Q Consensus 172 ~~L~~e~~~~~~kl~~Rrk 190 (240)
+.-......+...|+.-|.
T Consensus 404 ~~s~~rl~~L~~qWe~~R~ 422 (594)
T PF05667_consen 404 EASEQRLVELAQQWEKHRA 422 (594)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888888888888885444
No 81
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=60.03 E-value=1.8e+02 Score=28.61 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 108 ELKEEINRQTLQAKADIEDLKKQLEESKI 136 (240)
Q Consensus 108 ~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~ 136 (240)
+....++.+|.+...+|..+..+|.....
T Consensus 59 ~~~~kL~~~lk~~e~~i~~~~~ql~~s~~ 87 (420)
T COG4942 59 DQRAKLEKQLKSLETEIASLEAQLIETAD 87 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555555555555555554443
No 82
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=59.85 E-value=95 Score=25.36 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=48.2
Q ss_pred HHHHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 026335 75 AKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKE 142 (240)
Q Consensus 75 ~e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~ 142 (240)
+..|......++..+ +-++..+......-=.-+..|-..|...+.+|..+|..|..|+.....|.
T Consensus 42 ~~~f~~~~~~~~~~L---~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~ 106 (142)
T PF04048_consen 42 YQEFEELKKRIEKAL---QEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSLLGCRR 106 (142)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 556666555555444 45666666666666666778888999999999999999999998876543
No 83
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=59.19 E-value=2e+02 Score=28.88 Aligned_cols=68 Identities=21% Similarity=0.248 Sum_probs=45.9
Q ss_pred HHHHHhHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 135 KIERQHKEECEAIRKLIAVQ-PPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDEL 202 (240)
Q Consensus 135 k~~R~nK~EYD~LAk~I~~~-PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~L 202 (240)
+.+..-...|+.+...|... -+=......+..+.+.|..++.++..+...+..-++.-...=..+..|
T Consensus 351 ~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~ 419 (560)
T PF06160_consen 351 KQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKL 419 (560)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556788888888765 466777888888888888888888888888776555333333333333
No 84
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=58.07 E-value=2.9e+02 Score=30.38 Aligned_cols=63 Identities=14% Similarity=0.207 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 143 ECEAIRKLIAVQ-PPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNT 205 (240)
Q Consensus 143 EYD~LAk~I~~~-PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~ 205 (240)
.||.++..|.+. -.-++-.+.+++++.++..+..+...+......=+--|......+..|..-
T Consensus 735 ~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~e 798 (1074)
T KOG0250|consen 735 KLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEE 798 (1074)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 455555555432 233444444555555555555555555555544444444444444444433
No 85
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=57.53 E-value=1.6e+02 Score=27.31 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 026335 120 AKADIEDLKKQLEESKIERQHKEECEAIRKLIAV-QPPRSETQRIITDLEKEIAALEAENTAG-SRLLELRKKQFALLLH 197 (240)
Q Consensus 120 ~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~-~PsR~et~~~I~~Le~Ei~~L~~e~~~~-~~kl~~RrkQF~~Ll~ 197 (240)
.-..|..|+.+|..++. ++..+...-.. ||.-.....+|..|+..|.......... ...+.....+|..|..
T Consensus 212 ~~~~i~~L~~~l~~~~~------~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~r 285 (362)
T TIGR01010 212 QLSLISTLEGELIRVQA------QLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVL 285 (362)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Confidence 33445666666665553 33444434444 8888888889999998887765543221 1123333344554444
Q ss_pred HHHH
Q 026335 198 VVDE 201 (240)
Q Consensus 198 ~i~~ 201 (240)
...-
T Consensus 286 e~~~ 289 (362)
T TIGR01010 286 QNEL 289 (362)
T ss_pred HHHH
Confidence 4433
No 86
>PRK10884 SH3 domain-containing protein; Provisional
Probab=57.41 E-value=1.4e+02 Score=26.38 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026335 163 IITDLEKEIAALEAENTAGSRL 184 (240)
Q Consensus 163 ~I~~Le~Ei~~L~~e~~~~~~k 184 (240)
+++.++.+++.|+.+.......
T Consensus 147 ~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 147 QLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666665555555443
No 87
>PRK05560 DNA gyrase subunit A; Validated
Probab=57.40 E-value=2.6e+02 Score=29.58 Aligned_cols=63 Identities=13% Similarity=0.053 Sum_probs=54.7
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 147 IRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEE 209 (240)
Q Consensus 147 LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~de 209 (240)
=|..|..-|=+.=|.-.+.+|++|+.+|..+.+.+..-|....+....+...+.+++..--+.
T Consensus 415 qa~~IL~m~L~~LT~~e~~kL~~E~~~l~~ei~~l~~iL~~~~~l~~~i~~EL~~ikkkfg~~ 477 (805)
T PRK05560 415 QAQAILDMRLQRLTGLERDKIEDEYKELLALIADLKDILASPERLLEIIKEELLEIKEKFGDP 477 (805)
T ss_pred HHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 444566667788888899999999999999999999999999999999999999998766543
No 88
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=56.93 E-value=1.8e+02 Score=30.77 Aligned_cols=62 Identities=11% Similarity=0.086 Sum_probs=53.8
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 147 IRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEE 208 (240)
Q Consensus 147 LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~d 208 (240)
=|..|..-|=+.=|.-.+.+|++|+++|+.+.+.+..-|....++...|...+.+++..--+
T Consensus 412 qa~~il~m~L~~Lt~~e~~kl~~e~~~l~~ei~~l~~iL~~~~~l~~vi~~EL~eikkkfg~ 473 (800)
T TIGR01063 412 QAQAILDMRLQRLTGLEREKLQEEYKELLELIADLEDILASEERVLEIIREELEEIKEQFGD 473 (800)
T ss_pred HHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHhCC
Confidence 34456666778888889999999999999999999999999999999999999999865543
No 89
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=56.82 E-value=1.9e+02 Score=27.91 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=31.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 026335 156 PRSETQRIITDLEKEIAALEAENTAG------------SRLLELRKKQFA-LLLHVVDELQNTME 207 (240)
Q Consensus 156 sR~et~~~I~~Le~Ei~~L~~e~~~~------------~~kl~~RrkQF~-~Ll~~i~~Lq~~l~ 207 (240)
.+.+....|..++.+|.+++.+...+ ...+...+.+|. .+...+..++..+.
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~ 301 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLL 301 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677778888888777766653 333333333333 55666666666665
No 90
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=56.66 E-value=3.1e+02 Score=30.25 Aligned_cols=75 Identities=20% Similarity=0.300 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 113 INRQTLQAKADIEDLKKQLEESKIER-QHKEECEAIRKLIAVQ--PPRSETQRIITDLEKEIAALEAENTAGSRLLEL 187 (240)
Q Consensus 113 Ie~~i~~~k~~Ie~LK~eL~~Ak~~R-~nK~EYD~LAk~I~~~--PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~ 187 (240)
+...+...+.++..+..++..++... +.+.+.+.+...+... --+.....++..+..++..+..+...+...+..
T Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~ 710 (1201)
T PF12128_consen 633 INKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEELLEELKE 710 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433322 2233445555555543 224556667777777777777777666665543
No 91
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=56.56 E-value=1.3e+02 Score=25.78 Aligned_cols=96 Identities=20% Similarity=0.179 Sum_probs=47.8
Q ss_pred HHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHH
Q 026335 80 QELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSE 159 (240)
Q Consensus 80 ~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~e 159 (240)
..|......+.+...-...+...+..+......+...|.....+|......++.- +-||.+
T Consensus 95 ~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l------~DE~~~------------- 155 (194)
T PF08614_consen 95 QQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEIL------QDELQA------------- 155 (194)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH-------------
T ss_pred ccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH-------------
Confidence 3333444444444455555555555555555555555555555554444433322 223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 160 TQRIITDLEKEIAALEAENTAGSRLLELRKKQFAL 194 (240)
Q Consensus 160 t~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~ 194 (240)
.+-...-++..+..|+.++..+-..|..|+.+=+-
T Consensus 156 L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eAe 190 (194)
T PF08614_consen 156 LQLQLNMLEEKLRKLEEENRELVERWMQRKAQEAE 190 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788899999999999999999988876443
No 92
>PRK10698 phage shock protein PspA; Provisional
Probab=56.30 E-value=1.4e+02 Score=26.32 Aligned_cols=110 Identities=12% Similarity=0.055 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 026335 70 DCEKLAKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRK 149 (240)
Q Consensus 70 ~~~~l~e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk 149 (240)
.+..+..+|-.++..+..++.+.-.....-.++...+.......+.....+-. +..=..|+.-+..|..|...+.
T Consensus 28 ~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~-----~G~EdLAr~AL~~K~~~~~~~~ 102 (222)
T PRK10698 28 LVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALR-----KEKEDLARAALIEKQKLTDLIA 102 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHH
Confidence 44555666777777666666665555555555555555555444443333221 1222345666666666665444
Q ss_pred HHhcC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 150 LIAVQ-----PPRSETQRIITDLEKEIAALEAENTAGSRL 184 (240)
Q Consensus 150 ~I~~~-----PsR~et~~~I~~Le~Ei~~L~~e~~~~~~k 184 (240)
.+... ..-+.....+..|+..|.+.+..+..+...
T Consensus 103 ~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR 142 (222)
T PRK10698 103 TLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLR 142 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43321 122333455555555555555555544433
No 93
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=56.27 E-value=2.4e+02 Score=29.58 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=55.3
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026335 147 IRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEEQKN 212 (240)
Q Consensus 147 LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~de~~~ 212 (240)
=|..|..-|=+.=|...+.+|++|+++|..+.+.|..-|..+.++...+...+.+++..--++-.+
T Consensus 412 q~~~il~m~l~~lt~~e~~kl~~e~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~ik~kfg~~RRT 477 (738)
T TIGR01061 412 QAEAIVSLRLYRLTNTDIFELKEEQNELEKKIISLEQIIASEKARNKLLKKQLEEYKKQFAQQRRS 477 (738)
T ss_pred HHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCce
Confidence 444566667777888889999999999999999999999999999999999999999766544333
No 94
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=55.50 E-value=1.2e+02 Score=25.48 Aligned_cols=31 Identities=32% Similarity=0.335 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 026335 164 ITDLEKEIAALEAENT----AGSRLLELRKKQFAL 194 (240)
Q Consensus 164 I~~Le~Ei~~L~~e~~----~~~~kl~~RrkQF~~ 194 (240)
++.|+.+|+.|+.... .|..++...+.-|++
T Consensus 53 ~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai 87 (155)
T PF06810_consen 53 NEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAI 87 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555 566666666665544
No 95
>COG0188 GyrA Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair]
Probab=54.95 E-value=2.6e+02 Score=29.77 Aligned_cols=77 Identities=21% Similarity=0.219 Sum_probs=65.3
Q ss_pred HHHHHHHhHHHH---HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 133 ESKIERQHKEEC---EAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEE 209 (240)
Q Consensus 133 ~Ak~~R~nK~EY---D~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~de 209 (240)
.|+....++ | +.-|+.|-..|-|.=|.-.+.++++|.++|..+...+..-|...++++..+-..+.+.....-++
T Consensus 404 ~a~~~L~~~--f~lse~Qa~aIl~mrL~rLt~le~~~i~~E~~~L~~~i~~l~~iL~s~~~~~~~i~~eL~~~~~k~gd~ 481 (804)
T COG0188 404 EAKEELMAR--FGLSEKQAEAILDLRLRRLTGLEEEKIEKELKELEKEIADLEKILASEERLLDIIKKELLEIKKKFGDE 481 (804)
T ss_pred HHHHHHHHH--cCCcHHHHHHHHhhhHHHhhcchHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCcc
Confidence 444444444 6 77899999999999999999999999999999999999999999999999999999988777644
Q ss_pred hh
Q 026335 210 QK 211 (240)
Q Consensus 210 ~~ 211 (240)
-.
T Consensus 482 Rr 483 (804)
T COG0188 482 RR 483 (804)
T ss_pred ce
Confidence 43
No 96
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=53.24 E-value=2.2e+02 Score=27.44 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 117 TLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSR 183 (240)
Q Consensus 117 i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~ 183 (240)
+..+...++.++.-|... ..+.+|..|-..+. .|+--.......++-+++..|......|..
T Consensus 9 ~~~~~~~~~~~~~~~~l~----~~~~~~~~le~~~~-~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~ 70 (364)
T TIGR00020 9 IEDLTSRLDTVRGSLDPE----KKKARLEELEKEME-DPNFWNDQERAQAVIKERSSLEAVLDTLEE 70 (364)
T ss_pred HHHHHHHHHHHHhhCCHH----HHHHHHHHHHHHhc-CCccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444333 33556888777764 465444445566667777777777666655
No 97
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=53.17 E-value=27 Score=26.06 Aligned_cols=31 Identities=39% Similarity=0.530 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 026335 140 HKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEA 176 (240)
Q Consensus 140 nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~ 176 (240)
.|+|||+...++.. |..+|+.|+..++.|++
T Consensus 48 tREEFd~q~~~L~~------~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 48 TREEFDAQKAVLAR------TREKLEALEARLAALEA 78 (79)
T ss_pred cHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhc
Confidence 36777777766643 45566666666666653
No 98
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=52.87 E-value=56 Score=29.85 Aligned_cols=77 Identities=14% Similarity=0.158 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 102 EKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQP-PRSETQRIITDLEKEIAALEAENTA 180 (240)
Q Consensus 102 E~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~P-sR~et~~~I~~Le~Ei~~L~~e~~~ 180 (240)
-+..|.+.+..+..+|......|.+-+.+|+.-....-..-.|| ... ...| .-..+..-|++=+.||++|+.++..
T Consensus 181 ki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~--~~~-~~~~~~~~~~de~I~rEeeEIreLE~k~~~ 257 (259)
T PF08657_consen 181 KIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDD--EES-EESSEDSVDTDEDIRREEEEIRELERKKRE 257 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc--ccc-ccccccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666677777888888888887777765544444443443 111 2222 2347888999999999999888765
Q ss_pred H
Q 026335 181 G 181 (240)
Q Consensus 181 ~ 181 (240)
+
T Consensus 258 L 258 (259)
T PF08657_consen 258 L 258 (259)
T ss_pred c
Confidence 3
No 99
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=52.80 E-value=1.5e+02 Score=30.08 Aligned_cols=73 Identities=21% Similarity=0.148 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 112 EINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPP---RSETQRIITDLEKEIAALEAENTAGSRLLE 186 (240)
Q Consensus 112 ~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~Ps---R~et~~~I~~Le~Ei~~L~~e~~~~~~kl~ 186 (240)
+|+..+...+....+...+|.....+-.+|+.|+.|-+. .+-+ .......+++|++++......-..+...+.
T Consensus 168 ~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~--~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~ 243 (555)
T TIGR03545 168 EIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKK--DIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQ 243 (555)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444455555555555442 2232 224444555555555544444444333333
No 100
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=51.23 E-value=3.9e+02 Score=29.86 Aligned_cols=117 Identities=19% Similarity=0.241 Sum_probs=75.4
Q ss_pred HHHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHhcC
Q 026335 76 KAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIER-QHKEECEAIRKLIAVQ 154 (240)
Q Consensus 76 e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R-~nK~EYD~LAk~I~~~ 154 (240)
..+-..|..+-.-+.|+.--.+.+.++.......-+.-...|+....+|++|...+..++... .++..|+.=+ .
T Consensus 401 vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t-----~ 475 (1293)
T KOG0996|consen 401 VKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQET-----E 475 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----h
Confidence 344445555666777777777788888888888888888888888888888888777665543 3344444322 2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 155 PPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDE 201 (240)
Q Consensus 155 PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~ 201 (240)
+.+ ..|.++++++..+..........++.=.-.|..|+..-..
T Consensus 476 ~~~----~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~ 518 (1293)
T KOG0996|consen 476 GIR----EEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHET 518 (1293)
T ss_pred hhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 3456666666666666666666666655666665544333
No 101
>PF14282 FlxA: FlxA-like protein
Probab=50.55 E-value=71 Score=25.01 Aligned_cols=48 Identities=25% Similarity=0.331 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 160 TQRIITDLEKEIAALEAENTAGSR----LLELRKKQFALLLHVVDELQNTME 207 (240)
Q Consensus 160 t~~~I~~Le~Ei~~L~~e~~~~~~----kl~~RrkQF~~Ll~~i~~Lq~~l~ 207 (240)
....|..|++.|..|..+...+.. .-+.+..+...|-..|..|+..|.
T Consensus 17 ~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~ 68 (106)
T PF14282_consen 17 SDSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIA 68 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366788888888888888877777 345678899999999999998886
No 102
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=50.51 E-value=82 Score=27.58 Aligned_cols=39 Identities=36% Similarity=0.492 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 159 ETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNT 205 (240)
Q Consensus 159 et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~ 205 (240)
+...+|.+|+++|+.|+ .++. |-+||+.=+.-=.+|++.
T Consensus 179 ~~~~~i~~L~kei~~L~-------~~~~-kEkq~nrkveln~elk~l 217 (221)
T PF14335_consen 179 ERLEQIEKLEKEIAKLK-------KKIK-KEKQFNRKVELNTELKKL 217 (221)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHH-hccCHHHHHHHHHHHHHH
Confidence 33445555555555554 4433 556777766555555543
No 103
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=50.03 E-value=1.9e+02 Score=25.89 Aligned_cols=59 Identities=7% Similarity=-0.009 Sum_probs=30.6
Q ss_pred HHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 135 KIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFA 193 (240)
Q Consensus 135 k~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~ 193 (240)
+.+-+-|..|+..++.....-.-..+.+.++++..-+......-.....+++..+.+|.
T Consensus 123 ~~l~kaK~~Y~~~cke~e~a~~~~~s~k~leK~~~K~~ka~~~y~~~~~ky~~~~~~~~ 181 (261)
T cd07674 123 QHLQKSRENYHSKCVEQERLRREGVPQKELEKAELKTKKAAESLRGSVEKYNRARGDFE 181 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677888888777654211124555555554444444444444444444444443
No 104
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=49.34 E-value=2.9e+02 Score=27.75 Aligned_cols=143 Identities=14% Similarity=0.049 Sum_probs=97.1
Q ss_pred HhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHhcC--CChH
Q 026335 82 LSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIER-QHKEECEAIRKLIAVQ--PPRS 158 (240)
Q Consensus 82 La~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R-~nK~EYD~LAk~I~~~--PsR~ 158 (240)
|.+......|+++..++-.++-++|-.........+..+-.+|-.+-..+..|+.-. .+|+++|.+-.....| -+|.
T Consensus 205 ~Sal~~lq~~L~la~~~~~~~~e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~~l~~k 284 (554)
T KOG4677|consen 205 FSALRSLQDKLQLAEEAVSMHDENVITAVLIFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFRFLDRK 284 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 344566778888999999999999988888877777777777766666666665543 4566666544333321 1111
Q ss_pred HHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhc
Q 026335 159 ETQR--------------IITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEEQKNLIEEMRMAEEQK 224 (240)
Q Consensus 159 et~~--------------~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~de~~~~~~e~~~~~~~~ 224 (240)
+-.. .-..+.+|++++.-+..-...-++.=..|++.|=..|.++..++++..+...+.++.--+++
T Consensus 285 eeL~~s~~~e~~i~qs~~kstas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~k 364 (554)
T KOG4677|consen 285 EELALSHYREHLIIQSPDKSTASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRK 364 (554)
T ss_pred HHHHHHHHHHhhccCCCCcchhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHh
Confidence 1000 02345667777777776666666666789999999999999999999988888888744444
No 105
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=48.22 E-value=4.4e+02 Score=29.58 Aligned_cols=56 Identities=9% Similarity=0.163 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026335 157 RSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEEQKN 212 (240)
Q Consensus 157 R~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~de~~~ 212 (240)
.-.....+..|+.+++.+..........+...+.+...+-..+.++..-..+....
T Consensus 328 a~~~~~eL~el~~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~ 383 (1353)
T TIGR02680 328 AYQDAEELERARADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERE 383 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334555666666666666666666566555555555555555555555444443
No 106
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=47.54 E-value=2e+02 Score=25.28 Aligned_cols=95 Identities=15% Similarity=0.170 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHH--HHHHHHHHHHHHHHH
Q 026335 102 EKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRII--TDLEKEIAALEAENT 179 (240)
Q Consensus 102 E~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I--~~Le~Ei~~L~~e~~ 179 (240)
+...|....+.+..+|..+-.+|..|-.-|.-.... ++--.|-+.+..+.-|=..-+.= .--.++......+-.
T Consensus 87 ~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQ----e~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~ 162 (201)
T KOG4603|consen 87 KIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQ----EEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQ 162 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH----HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 445566666667777777777776666655433221 11112222222211111000000 000134556667778
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026335 180 AGSRLLELRKKQFALLLHVVD 200 (240)
Q Consensus 180 ~~~~kl~~RrkQF~~Ll~~i~ 200 (240)
.|-.-|..|+.-|..|+..+-
T Consensus 163 ~~~~~wrk~krmf~ei~d~~~ 183 (201)
T KOG4603|consen 163 KYCKEWRKRKRMFREIIDKLL 183 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999887653
No 107
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=47.39 E-value=1.5e+02 Score=24.04 Aligned_cols=85 Identities=26% Similarity=0.366 Sum_probs=44.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 026335 97 DANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEA 176 (240)
Q Consensus 97 ~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~ 176 (240)
+-+....+.+.....++..++......++.|+.+++.++.....-+.-. ......+..+..-+..+.+
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~------------~~l~~~~~~~~~~~k~~ke 115 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKE------------RQLQKQLKSLEAKLKQEKE 115 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
Confidence 4444555566666666677777777777777777766665443222221 1223334444444444444
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026335 177 ENTAGSRLLELRKKQFA 193 (240)
Q Consensus 177 e~~~~~~kl~~RrkQF~ 193 (240)
+...+-..+..++.||.
T Consensus 116 e~~klk~~~~~~~tq~~ 132 (151)
T PF11559_consen 116 ELQKLKNQLQQRKTQYE 132 (151)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444555555544
No 108
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=47.10 E-value=3.1e+02 Score=27.44 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 160 TQRIITDLEKEIAALEAENTAGSRLLELRKKQF 192 (240)
Q Consensus 160 t~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF 192 (240)
.+..+.++.+|+..+++++..+..-+..++.+.
T Consensus 387 ~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl 419 (493)
T KOG0804|consen 387 LQTKLKKCQKELKEEREENKKLIKNQDVWRGKL 419 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344556666666666666555544444443333
No 109
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=46.61 E-value=2e+02 Score=25.40 Aligned_cols=39 Identities=13% Similarity=0.267 Sum_probs=30.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 156 PRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFAL 194 (240)
Q Consensus 156 sR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~ 194 (240)
++...-..+..+..+|..++.+...++.-|..|+..+..
T Consensus 154 ~~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~ 192 (195)
T PF12761_consen 154 GRSKSGKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQ 192 (195)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445678889999999999999999999888765543
No 110
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=46.05 E-value=2.7e+02 Score=26.43 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhHHHHHHHHHHHhc---CCChH---HHHHHHHHHHHHHH
Q 026335 105 NFNELKEEINRQTLQAKADI------EDLKKQLEESKIERQHKEECEAIRKLIAV---QPPRS---ETQRIITDLEKEIA 172 (240)
Q Consensus 105 ~Y~~~~~~Ie~~i~~~k~~I------e~LK~eL~~Ak~~R~nK~EYD~LAk~I~~---~PsR~---et~~~I~~Le~Ei~ 172 (240)
.+.+++..=...++.+-.+. ...-.+|..| .-..|..++.+...+.. .|+|. ++.+.|..|++++.
T Consensus 229 s~re~~d~W~~~ae~~~~e~~~S~efak~~G~lvna--~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr 306 (320)
T TIGR01834 229 TAKALYDLWVIAAEEAYAEVFASEENAKVHGKFINA--LMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVK 306 (320)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554443 2333344443 45577889998888875 59987 45777778888888
Q ss_pred HHHHHHHHHH
Q 026335 173 ALEAENTAGS 182 (240)
Q Consensus 173 ~L~~e~~~~~ 182 (240)
+|+++...++
T Consensus 307 ~L~k~l~~l~ 316 (320)
T TIGR01834 307 SLKKRLGDLE 316 (320)
T ss_pred HHHHHHHHhh
Confidence 8877766554
No 111
>PRK01156 chromosome segregation protein; Provisional
Probab=45.19 E-value=3.9e+02 Score=28.05 Aligned_cols=46 Identities=17% Similarity=0.186 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 161 QRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTME 207 (240)
Q Consensus 161 ~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~ 207 (240)
...++.+...+..+..+...+...|.. .+.+...+..+..++..++
T Consensus 701 ~~~i~~l~~~~~~l~eel~~~~~~~~~-l~~~~~~~~~l~~~r~~l~ 746 (895)
T PRK01156 701 ESTIEILRTRINELSDRINDINETLES-MKKIKKAIGDLKRLREAFD 746 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Confidence 333444444444444444444444443 2223333444455555554
No 112
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=44.39 E-value=3.2e+02 Score=26.83 Aligned_cols=96 Identities=22% Similarity=0.203 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 104 ENFNELKEEINRQTLQAKADIEDLKKQ-LEESKIERQHKEECEAIRKLIAVQ--PPRSETQRIITDLEKEIAALEAENTA 180 (240)
Q Consensus 104 e~Y~~~~~~Ie~~i~~~k~~Ie~LK~e-L~~Ak~~R~nK~EYD~LAk~I~~~--PsR~et~~~I~~Le~Ei~~L~~e~~~ 180 (240)
...+.+-..+-..|..+..+..+|+.+ |+..+..+.-.+..+...|.-..- -=+.+...+-+-.-.|-+.|..++..
T Consensus 281 tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~ 360 (442)
T PF06637_consen 281 TKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDS 360 (442)
T ss_pred HHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777888889998888888654 666666677666666655543321 12334444444445566889999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026335 181 GSRLLELRKKQFALLLHVV 199 (240)
Q Consensus 181 ~~~kl~~RrkQF~~Ll~~i 199 (240)
+...|++|+++...+-..+
T Consensus 361 L~keLeekkreleql~~q~ 379 (442)
T PF06637_consen 361 LAKELEEKKRELEQLKMQL 379 (442)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999998876554433
No 113
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=44.22 E-value=2.3e+02 Score=26.18 Aligned_cols=65 Identities=17% Similarity=0.194 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHH
Q 026335 111 EEINRQTLQAKADIEDLKKQLEESK--------IERQHKEECEAIRKLIAVQP-PRSETQRIITDLEKEIAALE 175 (240)
Q Consensus 111 ~~Ie~~i~~~k~~Ie~LK~eL~~Ak--------~~R~nK~EYD~LAk~I~~~P-sR~et~~~I~~Le~Ei~~L~ 175 (240)
..|...|..+..++..++..|.... .+.+.|.|+|-.-|-....- -|-.-....++|+.||..|-
T Consensus 165 ~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY 238 (267)
T PF10234_consen 165 KALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLY 238 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555444322 34455777777777776653 36677777788888877663
No 114
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=43.99 E-value=2e+02 Score=24.30 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 100 LREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIER 138 (240)
Q Consensus 100 ~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R 138 (240)
-|-.+..+.+..-++.++..-+..|+.++..++.++.+.
T Consensus 123 yRPhQARetLi~~me~Ql~~kr~~i~~i~~~~~~~~~~l 161 (162)
T PF05983_consen 123 YRPHQARETLIMMMEEQLEEKREEIEEIRKVCEKAREVL 161 (162)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 477788888999999999999999999999999988764
No 115
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=43.94 E-value=1.3e+02 Score=22.21 Aligned_cols=62 Identities=18% Similarity=0.324 Sum_probs=42.5
Q ss_pred HHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 026335 78 FLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHK 141 (240)
Q Consensus 78 ~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK 141 (240)
+...+..+...+.... ..++..++..|......+...|...+..+..++.+++.++......
T Consensus 24 L~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a 85 (123)
T PF02050_consen 24 LQQERQEYQEQLSESQ--QGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEA 85 (123)
T ss_dssp HHHHHHHHHHT-------SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444433333333 3678899999999999999999999999999988888777665433
No 116
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=43.58 E-value=1.7e+02 Score=23.93 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 026335 103 KENFNELKEEINRQ--TLQAKADIEDLKKQLEESKIER 138 (240)
Q Consensus 103 ~e~Y~~~~~~Ie~~--i~~~k~~Ie~LK~eL~~Ak~~R 138 (240)
++.+++-...++.. .......+..|+.+|+.+...-
T Consensus 76 lE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~ae~~~ 113 (139)
T PF13935_consen 76 LERAQQRIAELEQECENEDIALDVQKLRVELEAAEKRI 113 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433 7777777888888888877665
No 117
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=43.28 E-value=4.6e+02 Score=28.36 Aligned_cols=83 Identities=19% Similarity=0.230 Sum_probs=49.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 026335 94 AVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAA 173 (240)
Q Consensus 94 ~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~ 173 (240)
-+..+-..=+.+|+.+..+++..-++.-.+.+.++.-=+.|..+|+.|+.=|. .-|++-++.-.+++.|+..
T Consensus 893 ~~~~~~d~~~~~~e~~~~~l~sk~~q~~~e~er~rk~qE~~E~ER~rrEaeek--------~rre~ee~k~~k~e~e~kR 964 (1259)
T KOG0163|consen 893 EMNSEYDVAVKNYEKLVKRLDSKEQQQIEELERLRKIQELAEAERKRREAEEK--------RRREEEEKKRAKAEMETKR 964 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHHHHHHHHHHH
Confidence 34455566778899998888874444444555555555677777877776654 3455555555555555544
Q ss_pred HHHHHHHHHHH
Q 026335 174 LEAENTAGSRL 184 (240)
Q Consensus 174 L~~e~~~~~~k 184 (240)
-.+|.....++
T Consensus 965 K~eEeqr~~qe 975 (1259)
T KOG0163|consen 965 KAEEEQRKAQE 975 (1259)
T ss_pred HHHHHHHHhhh
Confidence 44443333333
No 118
>PRK14154 heat shock protein GrpE; Provisional
Probab=43.18 E-value=1.6e+02 Score=26.12 Aligned_cols=54 Identities=20% Similarity=0.311 Sum_probs=31.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHH
Q 026335 154 QPPRSETQRIITDLEKEIAALEAENTAGSRLLE----------------LRKKQFALLLHVVDELQNTME 207 (240)
Q Consensus 154 ~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~----------------~RrkQF~~Ll~~i~~Lq~~l~ 207 (240)
+|.+......|+.|++++++++.....+.+-++ ...+-...||.+++.|.+.|.
T Consensus 51 ~~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRAL~ 120 (208)
T PRK14154 51 FPSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHGLE 120 (208)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHh
Confidence 566666666666666666655444322222222 111234568899999999986
No 119
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=42.45 E-value=85 Score=24.77 Aligned_cols=33 Identities=30% Similarity=0.615 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 100 LREKENFNELKEEINRQTLQAKADIEDLKKQLE 132 (240)
Q Consensus 100 ~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~ 132 (240)
..|.+....++..+..+|..-++.|++|...++
T Consensus 68 ~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 68 KKEKEQLKKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 567788889999999999999999998887663
No 120
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=42.28 E-value=1.4e+02 Score=22.17 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHhcC-CChHHHHHHHHH
Q 026335 111 EEINRQTLQAKADIEDLKKQLEESKIERQHKE-ECEAIRKLIAVQ-PPRSETQRIITD 166 (240)
Q Consensus 111 ~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~-EYD~LAk~I~~~-PsR~et~~~I~~ 166 (240)
..++++=..+.-+.-.||++|...+++..+-. +||+-.++|... ..|++....+..
T Consensus 11 ~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~ 68 (70)
T PF08606_consen 11 STLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAE 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHh
Confidence 34445555566666677777777777766654 788888777653 446655555544
No 121
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=42.10 E-value=2.7e+02 Score=25.25 Aligned_cols=114 Identities=18% Similarity=0.191 Sum_probs=72.0
Q ss_pred HHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC----
Q 026335 79 LQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQ---- 154 (240)
Q Consensus 79 l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~---- 154 (240)
..+|.-|+-.|.+ .+...-+......+......+..++.....+|..|+.++..++....... ..+...++..
T Consensus 100 pl~l~iF~~eI~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~--~~~~~E~~g~~~tg 176 (301)
T PF14362_consen 100 PLELKIFEKEIDQ-KLDEIRQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQ--QEAQCEIFGTGGTG 176 (301)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhcCCCCCC
Confidence 4466667777764 34444555556666666667788888888888888888877665543221 2222222221
Q ss_pred -----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q 026335 155 -----PPRSETQRIITDLEKEIAALEAENTAGSRLLE----LRKKQFALL 195 (240)
Q Consensus 155 -----PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~----~RrkQF~~L 195 (240)
|.-......++..+.++..+..........++ .|+.+....
T Consensus 177 ~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~l~~~ 226 (301)
T PF14362_consen 177 VPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAALDAQIAARKARLDEA 226 (301)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHH
Confidence 34556677888888888888888777777777 544444433
No 122
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=42.01 E-value=3.4e+02 Score=28.13 Aligned_cols=30 Identities=17% Similarity=0.350 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 104 ENFNELKEEINRQTLQAKADIEDLKKQLEE 133 (240)
Q Consensus 104 e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~ 133 (240)
..|...-..++..++....+|..|+..|++
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee 447 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEE 447 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555554443
No 123
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=42.00 E-value=3.2e+02 Score=26.23 Aligned_cols=109 Identities=12% Similarity=0.156 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 026335 101 REKENFNELKEEINRQTLQAKA-DIEDLKKQLEESKIERQHKE-------ECEAIRKLIAVQPPRSETQRIITDLEKEIA 172 (240)
Q Consensus 101 rE~e~Y~~~~~~Ie~~i~~~k~-~Ie~LK~eL~~Ak~~R~nK~-------EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~ 172 (240)
+++.--.+-..=|+..++.|++ +=+.++.++.+|-..+.+-. --......|++-.|--|-. .++-..++
T Consensus 117 ~~~~~~~~~~evlnh~~qrV~EaE~e~t~aE~~Has~a~~~l~l~~~~R~~ek~n~~AIkKSrpYfE~k---~~~t~~le 193 (426)
T KOG2008|consen 117 DKRQFDSAWQEVLNHATQRVMEAEQEKTRAELVHASTAARYLALMGRMRQLEKKNKRAIKKSRPYFELK---AKYTVQLE 193 (426)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcchHHHHH---HHHHHHHH
Confidence 4444444445556666776664 44567888888877665422 2223344566655544443 33444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026335 173 ALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEEQKN 212 (240)
Q Consensus 173 ~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~de~~~ 212 (240)
.+.+...-++..+.+|+.-+..-|..+...-..|.++..+
T Consensus 194 ~qk~tv~~Leaev~~~K~~Y~~slrnLE~ISd~IHeeRss 233 (426)
T KOG2008|consen 194 QQKKTVDDLEAEVTLAKGEYKMSLRNLEMISDEIHEERSS 233 (426)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhh
Confidence 5566666677778899999999999999998888888776
No 124
>PF15456 Uds1: Up-regulated During Septation
Probab=41.95 E-value=1.9e+02 Score=23.52 Aligned_cols=90 Identities=14% Similarity=0.141 Sum_probs=51.5
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC----C--------C
Q 026335 89 LLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQ----P--------P 156 (240)
Q Consensus 89 ~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~----P--------s 156 (240)
+.-.+++.++...|+-.|+ +....++++..|-..++..+....-...|-..|.-+..+ + +
T Consensus 4 LL~~tAl~ds~~feiLs~e--------EVe~LKkEl~~L~~R~~~lr~kl~le~k~RdAa~sl~~l~~~~~~~~~~~~~~ 75 (124)
T PF15456_consen 4 LLTETALGDSKEFEILSFE--------EVEELKKELRSLDSRLEYLRRKLALESKIRDAAHSLSRLYSSSSRRARFSRES 75 (124)
T ss_pred HHHHHHHHHHHcCcccCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcch
Confidence 3445566666666666665 344555555555555555555554444554455556554 1 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 157 RSETQRIITDLEKEIAALEAENTAGSRLLE 186 (240)
Q Consensus 157 R~et~~~I~~Le~Ei~~L~~e~~~~~~kl~ 186 (240)
-..+...+..+.+-|+++..+...++..+.
T Consensus 76 ~~~~eeel~~~~rk~ee~~~eL~~le~R~~ 105 (124)
T PF15456_consen 76 SLKAEEELAESDRKCEELAQELWKLENRLA 105 (124)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 345666777777777777766666555443
No 125
>PF12289 Rotavirus_VP1: Rotavirus VP1 structural protein; InterPro: IPR022071 This domain family is found in viruses, and is approximately 50 amino acids in length. The family is found in association with PF02123 from PFAM. VP1 is a structural protein of the inner core layer of the rotavirus virion. It complexes with VP2 and Vp3 to form this layer. ; GO: 0003968 RNA-directed RNA polymerase activity; PDB: 2R7X_B 2R7S_A 2R7Q_A 2R7U_A 2R7R_A 2R7T_A 2R7V_A 2R7W_A 2R7O_A.
Probab=41.74 E-value=34 Score=23.56 Aligned_cols=18 Identities=33% Similarity=0.586 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026335 184 LLELRKKQFALLLHVVDE 201 (240)
Q Consensus 184 kl~~RrkQF~~Ll~~i~~ 201 (240)
.++.||.||..||.-++.
T Consensus 19 alekrr~q~s~l~t~lq~ 36 (52)
T PF12289_consen 19 ALEKRRAQLSILLTFLQK 36 (52)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHhC
Confidence 578899999999987664
No 126
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=41.69 E-value=2.2e+02 Score=28.04 Aligned_cols=47 Identities=15% Similarity=0.083 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 161 QRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTME 207 (240)
Q Consensus 161 ~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~ 207 (240)
..-|.+|+.++..++.+...+...+..---|...|=..|..|+..|.
T Consensus 285 ~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa 331 (434)
T PRK15178 285 YQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIG 331 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHH
Confidence 34455555555555555444433333223344444444444444443
No 127
>COG3685 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.56 E-value=2.3e+02 Score=24.43 Aligned_cols=129 Identities=21% Similarity=0.252 Sum_probs=80.1
Q ss_pred HHHHHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Q 026335 74 LAKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAV 153 (240)
Q Consensus 74 l~e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~ 153 (240)
++-..|.+.-..|-.+.|. +-.|-.+ -.|.+++..|+..+..++.+|+.|..-++. =-.+..+.-||++.++|..
T Consensus 9 ~f~~~LrD~y~aEkq~~ka--L~kma~~--~~~~~Lka~~E~Hl~ET~~qi~rLe~Vfe~-~g~~~~~~~cda~~giiae 83 (167)
T COG3685 9 LFIDTLRDIYAAEKQILKA--LPKMARR--AQYPELKAAIEKHLEETKGQIERLEQVFER-LGKKARRVTCDAMEGLIAE 83 (167)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcccccchHHHHHHHHHH
Confidence 4445555665566665552 2222222 229999999999999999999999988877 4455667789999988863
Q ss_pred -------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026335 154 -------QPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEEQK 211 (240)
Q Consensus 154 -------~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~de~~ 211 (240)
+|+-+-.-..|..-..-.+..+.-.-..-.+|. +|... -.++.-|..+|.+|..
T Consensus 84 gq~i~~~~~~~evlda~L~~aaq~vEhyEIA~YgtL~a~A---~qlG~-~~a~~ll~~~L~eEka 144 (167)
T COG3685 84 GQEIMEEFKSNEVLDAGLIGAAQKVEHYEIACYGTLIAAA---EQLGD-DEAVKLLEAILEEEKA 144 (167)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCh-HHHHHHHHHHHHHHHH
Confidence 566555555555544445555443333334444 33221 2345556667766654
No 128
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=41.50 E-value=3e+02 Score=25.68 Aligned_cols=83 Identities=22% Similarity=0.218 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH-
Q 026335 101 REKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENT- 179 (240)
Q Consensus 101 rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~- 179 (240)
.|...|+.=..+|+.+...--.+++.-...|+ .+-+|..|+..+.+=..--.|.+.-+++..|+.++..+++.++
T Consensus 34 eEl~EFQegSrE~EaelesqL~q~etrnrdl~----t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeq 109 (333)
T KOG1853|consen 34 EELNEFQEGSREIEAELESQLDQLETRNRDLE----TRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQ 109 (333)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555665555666555443333333222222 3445555655544333334566666677777777776666553
Q ss_pred --HHHHHHHH
Q 026335 180 --AGSRLLEL 187 (240)
Q Consensus 180 --~~~~kl~~ 187 (240)
+|-++|+.
T Consensus 110 l~kyiReLEQ 119 (333)
T KOG1853|consen 110 LRKYIRELEQ 119 (333)
T ss_pred HHHHHHHHHH
Confidence 34444443
No 129
>PF13514 AAA_27: AAA domain
Probab=41.39 E-value=5e+02 Score=28.25 Aligned_cols=146 Identities=18% Similarity=0.226 Sum_probs=69.9
Q ss_pred HHHhhhccCCCCCCCchHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHhccchhhhhHHHHHHHhHHHHHHHHHH
Q 026335 30 IKHRLLTRTTTTRGEPPLKKLQKKFTSFVLEIEKDEDNNNDCEKLAKAFLQELSTFEIPLLKSKAVIDANLREKENFNEL 109 (240)
Q Consensus 30 Ik~RLL~dg~~~gderpLkrL~Kkf~~~~~~~~~~~d~~~~~~~l~e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~ 109 (240)
|-+.|+.-|.|.|+ |..+.+.+-+=......+...... .-..+.++...+-.+.....- ..+-......
T Consensus 114 lg~~Lf~agaG~~~---l~~~~~~L~~ea~~Lfkprg~~~~----in~~l~~l~e~~~~l~~~~~~----~~~y~~l~~~ 182 (1111)
T PF13514_consen 114 LGQLLFSAGAGLGS---LSQVLKQLDKEADELFKPRGRKPE----INQALKELKELERELREAEVR----AAEYQELQQA 182 (1111)
T ss_pred HHHHHHHhcccccc---HHHHHHHHHHHHHHhhCCCCCChH----HHHHHHHHHHHHHHHHHHhcc----HHHHHHHHHH
Confidence 33455555665566 777777777644444333322222 222345555444444443322 1222222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHhc---CCC-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 110 KEEINRQTLQAKADIEDLKKQLEESKIERQH---KEECEAIRKLIAV---QPP-RSETQRIITDLEKEIAALEAENTAGS 182 (240)
Q Consensus 110 ~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~n---K~EYD~LAk~I~~---~Ps-R~et~~~I~~Le~Ei~~L~~e~~~~~ 182 (240)
....+..+..++.++..++.++..-...++. =.++..|-..+.. .|+ ..+....+..+..++..+..+...+.
T Consensus 183 ~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~ 262 (1111)
T PF13514_consen 183 LEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELAELGEVPDFPEDGAERLEQLEEELAEAQAQLERLQ 262 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCcCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666655554444443 3445555555553 232 33444455555555555444444444
Q ss_pred HHHH
Q 026335 183 RLLE 186 (240)
Q Consensus 183 ~kl~ 186 (240)
..+.
T Consensus 263 ~~~~ 266 (1111)
T PF13514_consen 263 EELA 266 (1111)
T ss_pred HHHH
Confidence 4444
No 130
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=41.14 E-value=3.3e+02 Score=26.06 Aligned_cols=99 Identities=14% Similarity=0.256 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 105 NFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRL 184 (240)
Q Consensus 105 ~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~k 184 (240)
+-......|......++..+..+-.++..+--.-..|+.| ||.+ -+........+..++.+++..-......
T Consensus 224 qm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~------iN~q--le~l~~eYr~~~~~ls~~~~~y~~~s~~ 295 (359)
T PF10498_consen 224 QMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKY------INNQ--LEPLIQEYRSAQDELSEVQEKYKQASEG 295 (359)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH--hHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3344455666666666666666666666655555555544 3332 1222334566677777777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026335 185 LELRKKQFALLLHVVDELQNTMEEEQK 211 (240)
Q Consensus 185 l~~RrkQF~~Ll~~i~~Lq~~l~de~~ 211 (240)
...|..+++.|...+...+..+++-..
T Consensus 296 V~~~t~~L~~IseeLe~vK~emeerg~ 322 (359)
T PF10498_consen 296 VSERTRELAEISEELEQVKQEMEERGS 322 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888888888888888888888875543
No 131
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=41.11 E-value=2.5e+02 Score=24.66 Aligned_cols=67 Identities=25% Similarity=0.319 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 103 KENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGS 182 (240)
Q Consensus 103 ~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~ 182 (240)
...|......++.....-.+.+..++.+|..=+-.+.-|...+. .|..|++++.....+.....
T Consensus 42 ~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~----------------eI~~Le~e~~~~~~e~~~~l 105 (206)
T PF14988_consen 42 VSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQER----------------EIQTLEEELEKMRAEHAEKL 105 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHH
Confidence 34577778888888888888888888888888888777766654 66666666666665555444
Q ss_pred HHH
Q 026335 183 RLL 185 (240)
Q Consensus 183 ~kl 185 (240)
..+
T Consensus 106 ~~~ 108 (206)
T PF14988_consen 106 QEA 108 (206)
T ss_pred HHH
Confidence 433
No 132
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=40.91 E-value=3.7e+02 Score=26.52 Aligned_cols=75 Identities=12% Similarity=0.228 Sum_probs=40.8
Q ss_pred HHHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 026335 76 KAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEIN-------RQTLQAKADIEDLKKQLEESKIERQHKEECEAIR 148 (240)
Q Consensus 76 e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie-------~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LA 148 (240)
..+-.+++.++..+...+-...--..++..-+..-.+|+ ........+|.++...|...+..+ +++.+.||
T Consensus 41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~--r~qr~~La 118 (420)
T COG4942 41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE--REQRRRLA 118 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 445666666666665555444444444444444444444 344445555555555555544444 67777788
Q ss_pred HHHh
Q 026335 149 KLIA 152 (240)
Q Consensus 149 k~I~ 152 (240)
+.+.
T Consensus 119 ~~L~ 122 (420)
T COG4942 119 EQLA 122 (420)
T ss_pred HHHH
Confidence 7775
No 133
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=40.11 E-value=68 Score=28.32 Aligned_cols=45 Identities=27% Similarity=0.357 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHH------HHHhhchHHHHHHHHHhcCCc
Q 026335 183 RLLELRKKQFALLLH-VVDELQNTM------EEEQKNLIEEMRMAEEQKGGM 227 (240)
Q Consensus 183 ~kl~~RrkQF~~Ll~-~i~~Lq~~l------~de~~~~~~e~~~~~~~~~~~ 227 (240)
.+|.+=|+||..||. --.+|+..- -.+-.+..+|+.++++|+.+.
T Consensus 128 ~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~L 179 (195)
T PF12761_consen 128 SKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDGL 179 (195)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 345555778887776 334444321 123334556666666665443
No 134
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=40.05 E-value=4.7e+02 Score=27.50 Aligned_cols=65 Identities=14% Similarity=0.095 Sum_probs=55.6
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026335 148 RKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEEQKN 212 (240)
Q Consensus 148 Ak~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~de~~~ 212 (240)
|+.|..-|=+.=|.-.+.+|++|+++|..+.+.|...|....+....|...+.+++..--++-.+
T Consensus 423 a~~Il~m~L~~Lt~le~~kl~~E~~~l~~ei~~l~~iL~s~~~l~~~i~~eL~~ik~kfg~~RRT 487 (742)
T PRK05561 423 AEAILELRLRRLAKLEEIEIRKEQDELRKEIAELEAILASERKLRKLIKKELKADAKKFGDPRRT 487 (742)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCce
Confidence 44566667788888899999999999999999999999999999999999999999776654444
No 135
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=39.61 E-value=2.3e+02 Score=23.73 Aligned_cols=105 Identities=18% Similarity=0.233 Sum_probs=66.4
Q ss_pred HHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHh--cCCCh
Q 026335 81 ELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQ-HKEECEAIRKLIA--VQPPR 157 (240)
Q Consensus 81 eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~-nK~EYD~LAk~I~--~~PsR 157 (240)
+|-.+-....+.-.+..-...-+.........+..++......+..++.+|..++..|. .+..+..|...-. .+|+-
T Consensus 64 eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~l 143 (177)
T PF13870_consen 64 ELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPAL 143 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH
Confidence 44444444555555555555556666667777777777778888888888887777643 3444444443333 24653
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 158 ----SETQRIITDLEKEIAALEAENTAGSRLL 185 (240)
Q Consensus 158 ----~et~~~I~~Le~Ei~~L~~e~~~~~~kl 185 (240)
..+...+..+++.|..++.....++..+
T Consensus 144 l~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 144 LRDYDKTKEEVEELRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3467777788888888887777666554
No 136
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=39.51 E-value=2.5e+02 Score=24.22 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=27.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 97 DANLREKENFNELKEEINRQTLQAKADIEDLKKQL 131 (240)
Q Consensus 97 ~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL 131 (240)
+++..+...|+++...++..+.+-+..+.+|...|
T Consensus 5 ~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l 39 (182)
T PF15035_consen 5 DAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQL 39 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777778888888888888888888888887777
No 137
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=39.38 E-value=1.6e+02 Score=26.89 Aligned_cols=51 Identities=16% Similarity=0.124 Sum_probs=43.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 144 CEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALL 195 (240)
Q Consensus 144 YD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~L 195 (240)
+..+-++|+.||-- .....|..|...-..|......|+..+..-+.|+..+
T Consensus 163 L~~ae~L~~vYP~~-ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~ 213 (259)
T PF08657_consen 163 LRGAEKLCNVYPLP-GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERM 213 (259)
T ss_pred HHHHHHHHHhCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788899866 7788999999999999999999999999999998877
No 138
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=39.20 E-value=3.8e+02 Score=26.16 Aligned_cols=59 Identities=17% Similarity=0.296 Sum_probs=46.9
Q ss_pred HHHHHHhccchhhh-hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 77 AFLQELSTFEIPLL-KSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESK 135 (240)
Q Consensus 77 ~~l~eLa~~E~s~~-K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak 135 (240)
.+-..+..+...+. -.+++.++-..|+-+|+.+.+++..-++--+.+|..||++|..-.
T Consensus 230 ~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~E 289 (395)
T PF10267_consen 230 RLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASME 289 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33444444444333 356888999999999999999999999999999999999997654
No 139
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=38.25 E-value=2.6e+02 Score=24.04 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 157 RSETQRIITDLEKEIAALEAENTAGSR 183 (240)
Q Consensus 157 R~et~~~I~~Le~Ei~~L~~e~~~~~~ 183 (240)
-.+....++.++.-|..++.....+..
T Consensus 160 ~~~a~~~~er~e~ki~~~ea~a~a~~e 186 (221)
T PF04012_consen 160 VSSAMDSFERMEEKIEEMEARAEASAE 186 (221)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666554443
No 140
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=38.12 E-value=2.4e+02 Score=23.53 Aligned_cols=32 Identities=41% Similarity=0.416 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 101 REKENFNELKEEINRQTLQAKADIEDLKKQLE 132 (240)
Q Consensus 101 rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~ 132 (240)
++++.-+..+..+....+..+..|+.|+.++.
T Consensus 31 reLe~~q~~~e~~~~daEn~k~eie~L~~el~ 62 (140)
T PF10473_consen 31 RELEMSQENKECLILDAENSKAEIETLEEELE 62 (140)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444
No 141
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=38.05 E-value=5.2e+02 Score=27.47 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=34.4
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026335 151 IAVQPPRSETQRIITDLEKEIAALEAENTAG-----------SRLLELRKKQFALLLHVVDELQNTMEEEQK 211 (240)
Q Consensus 151 I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~-----------~~kl~~RrkQF~~Ll~~i~~Lq~~l~de~~ 211 (240)
+..+|+...+......|+.-+.+...-...+ ...++.-++++..+-..+..|+.-+.+=..
T Consensus 422 l~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~ 493 (775)
T PF10174_consen 422 LSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKEL 493 (775)
T ss_pred HhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3446766555544455544444443333332 244555666777777777888777765554
No 142
>COG5283 Phage-related tail protein [Function unknown]
Probab=37.67 E-value=6.3e+02 Score=28.31 Aligned_cols=95 Identities=22% Similarity=0.234 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHhcCC---------------ChHHHHHHHHHHHHHHHH
Q 026335 110 KEEINRQTLQAKADIEDLKKQL-EESKIERQHKEECEAIRKLIAVQP---------------PRSETQRIITDLEKEIAA 173 (240)
Q Consensus 110 ~~~Ie~~i~~~k~~Ie~LK~eL-~~Ak~~R~nK~EYD~LAk~I~~~P---------------sR~et~~~I~~Le~Ei~~ 173 (240)
++.|-+..+..+.=+++++.++ +.++.+++.|+.|+++...++.-- .-.-+++.|.++..+|..
T Consensus 59 ~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~ 138 (1213)
T COG5283 59 YEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAENKLRSLSGQFGVASEQLMLQQKEIQRLQYAIST 138 (1213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHh
Confidence 3455566677778888888887 568889999999999888887421 112346788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 174 LEAENTAGSRLLELRKKQFALLLHVVDELQN 204 (240)
Q Consensus 174 L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~ 204 (240)
+.+--....+.|..=+++|......+..|+.
T Consensus 139 t~k~maaQ~~l~eqt~n~~g~a~~~~~gl~e 169 (1213)
T COG5283 139 LNKSMAAQARLLEQTGNKFGTADAKVVGLRE 169 (1213)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHhhhhHhH
Confidence 8887777888888888999998888877773
No 143
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=37.67 E-value=3e+02 Score=24.66 Aligned_cols=43 Identities=21% Similarity=0.262 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 163 IITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNT 205 (240)
Q Consensus 163 ~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~ 205 (240)
-|..|+..|..++.++.............+..|.+.|+.++..
T Consensus 61 DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 61 DINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666665566777777777777766
No 144
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=37.18 E-value=5.8e+02 Score=27.77 Aligned_cols=80 Identities=16% Similarity=0.127 Sum_probs=65.4
Q ss_pred HHHHHHHhHHHH-HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026335 133 ESKIERQHKEEC-EAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEEQK 211 (240)
Q Consensus 133 ~Ak~~R~nK~EY-D~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~de~~ 211 (240)
+|+.....+-.+ +.=|+.|-..+=+.=|.-.+.+|++|.++|..+.+.|..-|..+.++...|...+.+++..--++-.
T Consensus 416 ~a~~~l~~~f~~s~~qa~aIl~mrL~~Lt~le~~kl~~E~~eL~~~I~~l~~iL~~~~~l~~vi~~EL~eik~kygd~RR 495 (957)
T PRK13979 416 DASENLIEKFGFTDEQAEAILELMLYRLTGLEIVAFEKEYKELEKLIKKLTKILSSEKELLKVIKKELKEVKEKYGDERR 495 (957)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhCcHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 344444444445 5668889988988889999999999999999999999999999999999999999999876654433
Q ss_pred c
Q 026335 212 N 212 (240)
Q Consensus 212 ~ 212 (240)
+
T Consensus 496 T 496 (957)
T PRK13979 496 T 496 (957)
T ss_pred e
Confidence 3
No 145
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=37.15 E-value=4.2e+02 Score=26.11 Aligned_cols=54 Identities=26% Similarity=0.172 Sum_probs=43.7
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 148 RKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDE 201 (240)
Q Consensus 148 Ak~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~ 201 (240)
|..|..-|=+.=|...+.+|++|+++|.++.+.+..++....+.-..+...+.+
T Consensus 391 a~~IL~m~L~~LT~~e~~kL~~E~~~l~~ei~~l~~~l~~~~~~~~~i~~eL~~ 444 (445)
T cd00187 391 ADAILDMRLRRLTKLEREKLLKELKELEAEIEDLEKILASEERPKDLWKEELDE 444 (445)
T ss_pred HHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 445666788888889999999999999999999999998777777766665543
No 146
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=37.14 E-value=6.5e+02 Score=28.32 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=11.0
Q ss_pred CCchHHHHHHHHHHh
Q 026335 43 GEPPLKKLQKKFTSF 57 (240)
Q Consensus 43 derpLkrL~Kkf~~~ 57 (240)
+..+|..|+++.+.+
T Consensus 178 ~~~ry~~l~~~l~~l 192 (1353)
T TIGR02680 178 GEERYAALLDLLIQL 192 (1353)
T ss_pred ChHHHHHHHHHHHHH
Confidence 456888888888553
No 147
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=37.02 E-value=3.1e+02 Score=24.59 Aligned_cols=67 Identities=22% Similarity=0.351 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 026335 72 EKLAKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKE 142 (240)
Q Consensus 72 ~~l~e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~ 142 (240)
+++...++.+++.++- ......=...|++.-.+++..+.+++..+..+|..+-....+++..|..++
T Consensus 14 ek~k~~i~~e~~~~e~----ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~ 80 (230)
T PF10146_consen 14 EKLKNEILQEVESLEN----EEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQ 80 (230)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555554443 233444556778888888888888888888888888888888887766543
No 148
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=36.27 E-value=5.1e+02 Score=26.86 Aligned_cols=61 Identities=20% Similarity=0.125 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 145 EAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEE 208 (240)
Q Consensus 145 D~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~d 208 (240)
+.=|..|..-|=+.=|.-.+.++++|+++|.++.+.+..-|.. .-..+...+.+|+..--+
T Consensus 387 ~~qa~ail~mrl~rlt~~e~~k~~~e~~~l~~~i~~~~~~L~~---~~~~~~~el~~l~~kyg~ 447 (635)
T PRK09631 387 EEDIENLLKIPIRRISLFDIDKNQKEIRILNKELKSVEKNLKS---IKGYAINFIDKLLAKYSK 447 (635)
T ss_pred HHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCC
Confidence 3346667777777778888899999999999999999999986 555666666666654443
No 149
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=36.05 E-value=6.2e+02 Score=27.78 Aligned_cols=39 Identities=28% Similarity=0.414 Sum_probs=19.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 96 IDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEES 134 (240)
Q Consensus 96 ~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~A 134 (240)
......++..+......++.+|...+.++.+++..+...
T Consensus 248 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~ 286 (1163)
T COG1196 248 LSRLEEELEELQEELEEAEKEIEELKSELEELREELEEL 286 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555555555444444
No 150
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=35.97 E-value=1.7e+02 Score=21.32 Aligned_cols=66 Identities=26% Similarity=0.277 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 121 KADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQ 191 (240)
Q Consensus 121 k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQ 191 (240)
...|..|+..|..+-. ++- .|+..-+.++. -|+....+|...-.++..|+.+.+.+...++.++.|
T Consensus 4 ea~~~~Lr~rLd~~~r--k~~-~~~~~~k~L~~--ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~~ 69 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTR--KNS-VHEIENKRLRR--ERDSAERQLGDAYEENNKLKEENEALRKELEELRAQ 69 (69)
T ss_pred HHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3455566666655432 211 23333333333 466666666777777777777777777777766654
No 151
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=35.76 E-value=1.7e+02 Score=21.30 Aligned_cols=54 Identities=15% Similarity=0.130 Sum_probs=25.2
Q ss_pred HHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 78 FLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQL 131 (240)
Q Consensus 78 ~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL 131 (240)
+-..|..+.-.+........+=.+|+..+..--..--.+|...+.+++.|+.+|
T Consensus 10 Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 10 LRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444445555554444444444444444444444443
No 152
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=35.72 E-value=2.7e+02 Score=27.35 Aligned_cols=47 Identities=21% Similarity=0.358 Sum_probs=41.2
Q ss_pred hhhh-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 88 PLLK-SKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEES 134 (240)
Q Consensus 88 s~~K-~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~A 134 (240)
.++| .+++.++-..|+=+|+.+.+++..-.+--+.+|..||.+|..-
T Consensus 289 ~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasm 336 (455)
T KOG3850|consen 289 QIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASM 336 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444 5699999999999999999999999999999999999998754
No 153
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=35.68 E-value=1.7e+02 Score=29.33 Aligned_cols=13 Identities=15% Similarity=-0.008 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 026335 194 LLLHVVDELQNTM 206 (240)
Q Consensus 194 ~Ll~~i~~Lq~~l 206 (240)
.+=..+..|+..+
T Consensus 108 eLEaE~~~Lk~Ql 120 (475)
T PRK13729 108 KLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333443333
No 154
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=35.47 E-value=4.1e+02 Score=25.56 Aligned_cols=64 Identities=17% Similarity=0.220 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 115 RQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSR 183 (240)
Q Consensus 115 ~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~ 183 (240)
..+......+..|+..|..... +.+|..|-..+.. |+--...+...++-+++..|......|..
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~----~~~~~~l~~~l~~-p~~~~d~~~~~~l~ke~~~L~~iv~~~~~ 70 (367)
T PRK00578 7 ERLKDLDEKLENIRGVLDVDAL----KERLEELEAEAED-PDFWNDQERAQKVTKELSSLKAKLDTLEE 70 (367)
T ss_pred HHHHHHHHHHHHHHhhCCHHHH----HHHHHHHHHHhcC-CccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677777777777766554 4457777766644 55433444556666677777666655544
No 155
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=35.34 E-value=6.2e+02 Score=27.54 Aligned_cols=18 Identities=44% Similarity=0.669 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026335 190 KQFALLLHVVDELQNTME 207 (240)
Q Consensus 190 kQF~~Ll~~i~~Lq~~l~ 207 (240)
....+++-.+..|++.+.
T Consensus 501 ~El~~l~~e~~~lq~~~~ 518 (980)
T KOG0980|consen 501 QELALLLIELEELQRTLS 518 (980)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 344555666666666654
No 156
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=35.21 E-value=2.4e+02 Score=22.71 Aligned_cols=56 Identities=21% Similarity=0.233 Sum_probs=37.5
Q ss_pred HHhccchhhhhHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 81 ELSTFEIPLLKSK-AVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKI 136 (240)
Q Consensus 81 eLa~~E~s~~K~~-~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~ 136 (240)
-+.-+|+.+.|.+ ...+.|..|++.|.+++.+=...-...-.........|.++..
T Consensus 8 rIkdLeselsk~Ktsq~d~~~~eLEkYkqly~eElk~r~SLs~kL~ktnerLaevst 64 (111)
T PF12001_consen 8 RIKDLESELSKMKTSQEDSNKTELEKYKQLYLEELKLRKSLSNKLNKTNERLAEVST 64 (111)
T ss_pred HHHHHHHHHHHhHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3555677888888 7778889999999999875544444444444445555544443
No 157
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=35.12 E-value=2e+02 Score=21.69 Aligned_cols=64 Identities=14% Similarity=0.182 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 141 KEECEAIRKLIAVQP-PRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTME 207 (240)
Q Consensus 141 K~EYD~LAk~I~~~P-sR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~ 207 (240)
|.|||.++..++.+. .+++...+|..--.||..+....-.++..-..=|.++ =..|..|++.|+
T Consensus 10 r~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~Y---EeEI~rLr~eLe 74 (79)
T PF08581_consen 10 RQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQY---EEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 445666655555432 2344444444444444444443333333333222222 245555555554
No 158
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=35.02 E-value=2.9e+02 Score=23.69 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=34.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 154 QPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTME 207 (240)
Q Consensus 154 ~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~ 207 (240)
+|.-........+|+.+++.|..+.+.+...+..=.+....+-.--..|-..++
T Consensus 96 ~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 96 NPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566667778888888888888888877766555555444444444444443
No 159
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=35.01 E-value=5.8e+02 Score=27.12 Aligned_cols=104 Identities=24% Similarity=0.251 Sum_probs=72.3
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCC-ChHHHHHHHHHHHH
Q 026335 91 KSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQP-PRSETQRIITDLEK 169 (240)
Q Consensus 91 K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~P-sR~et~~~I~~Le~ 169 (240)
|...=..+-..+++.-.+.....+..+...-.-..+|=.+|..+|-+..+|. .|++++.-.++- -|.+.+..|..+.+
T Consensus 21 kae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i-~~~~~~~s~e~e~~~~~le~~l~e~~~ 99 (769)
T PF05911_consen 21 KAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKI-HEAVAKKSKEWEKIKSELEAKLAELSK 99 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3333333444455555555556666666666667777777777777766554 688888877774 46699999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 170 EIAALEAENTAGSRLLELRKKQFALL 195 (240)
Q Consensus 170 Ei~~L~~e~~~~~~kl~~RrkQF~~L 195 (240)
.+..+..++..+...|..|-+-..-|
T Consensus 100 ~l~~~~~e~~~l~~~l~~~~~~i~~l 125 (769)
T PF05911_consen 100 RLAESAAENSALSKALQEKEKLIAEL 125 (769)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 99999999988888777766544433
No 160
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=34.39 E-value=2.1e+02 Score=23.97 Aligned_cols=42 Identities=19% Similarity=0.273 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026335 169 KEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEEQ 210 (240)
Q Consensus 169 ~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~de~ 210 (240)
.+|+.|++++......++..+.+..-|+...-.|+..+.-..
T Consensus 1 q~~~~Le~ek~~~~~rI~~K~~~LqEL~~Q~va~knLv~RN~ 42 (142)
T PF08781_consen 1 QECEELEEEKQRRRERIKKKKEQLQELILQQVAFKNLVQRNR 42 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999987433
No 161
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=34.12 E-value=2.6e+02 Score=23.83 Aligned_cols=46 Identities=28% Similarity=0.325 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 159 ETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQN 204 (240)
Q Consensus 159 et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~ 204 (240)
+....|..|+.++..|..+...+...+....+....|-+.+.-|+-
T Consensus 113 ~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l 158 (194)
T PF08614_consen 113 EKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQL 158 (194)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777777777777777777777666666663
No 162
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=34.08 E-value=2.3e+02 Score=22.14 Aligned_cols=36 Identities=14% Similarity=0.209 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 026335 110 KEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIR 148 (240)
Q Consensus 110 ~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LA 148 (240)
+.++-..+..+.....+|-.+|..+.. +-.+|..++
T Consensus 24 Yk~L~~~v~~v~~~f~~L~~~l~~l~~---~s~ey~~i~ 59 (101)
T PF07303_consen 24 YKELHAEVDAVSRRFQELDSELKRLPP---GSQEYKRIA 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-T---TSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC---CCcHHHHHH
Confidence 445566667777777777777765544 555666555
No 163
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=33.74 E-value=2.1e+02 Score=21.64 Aligned_cols=60 Identities=12% Similarity=0.206 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHhccchhhhhHHHHHHHhHHHHHHH
Q 026335 46 PLKKLQKKFTSFVLEIEKDEDNNNDCEKLAKAFLQELSTFEIPLLKSKAVIDANLREKENF 106 (240)
Q Consensus 46 pLkrL~Kkf~~~~~~~~~~~d~~~~~~~l~e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y 106 (240)
.+.++-..|..|.....+.+ +......+..+|...|..++..+.=+.-...+-.+.-..|
T Consensus 13 sl~~l~~~~~~~~~~~~~~~-~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF 72 (97)
T PF09177_consen 13 SLDRLESLYRRWQRLRSDTS-SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKF 72 (97)
T ss_dssp HHHHHHHHHHHHHHHTTHCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHhcccCC-CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 45666667777777654333 3444444555555555555555444443333322233444
No 164
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=33.63 E-value=4e+02 Score=24.81 Aligned_cols=32 Identities=28% Similarity=0.437 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 102 EKENFNELKEEINRQTLQAKADIEDLKKQLEE 133 (240)
Q Consensus 102 E~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~ 133 (240)
+++.+..+..++..++..+..+-+++..+|..
T Consensus 51 el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 51 ELEKLEQEEEELLQELEELEKEREELDQELEE 82 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433
No 165
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=33.62 E-value=4.3e+02 Score=25.26 Aligned_cols=48 Identities=15% Similarity=0.410 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 159 ETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTME 207 (240)
Q Consensus 159 et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~ 207 (240)
.|+..|..+-++|..|.--+..+...+..= +.++.|+.++..|+..+.
T Consensus 82 ~sE~~V~~it~dIk~LD~AKrNLT~SIT~L-krL~MLv~a~~qL~~~~~ 129 (383)
T PF04100_consen 82 ESEQMVQEITRDIKQLDNAKRNLTQSITTL-KRLQMLVTAVEQLKELAK 129 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777666665532 236666666666665554
No 166
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=33.39 E-value=2.2e+02 Score=21.80 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 162 RIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQ 203 (240)
Q Consensus 162 ~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq 203 (240)
..+..|+..++.+..+...++..+..-.++|.-+-..|.+|+
T Consensus 63 ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 63 EARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777777777777777777777777777766666654
No 167
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=33.05 E-value=2.3e+02 Score=27.13 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 112 EINRQTLQAKADIEDLKKQLEESK 135 (240)
Q Consensus 112 ~Ie~~i~~~k~~Ie~LK~eL~~Ak 135 (240)
.++..+....++|++|...|+...
T Consensus 246 ~l~~~~~~~~~~i~~l~~~l~~~~ 269 (406)
T PF02388_consen 246 SLQEKLEKLEKEIEKLEEKLEKNP 269 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 445555555555665555555544
No 168
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=32.89 E-value=4.4e+02 Score=25.10 Aligned_cols=79 Identities=19% Similarity=0.232 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHHHH
Q 026335 99 NLREKENFNELKEEINRQTLQAKADIEDLKKQLE-ESKIERQHKEECEAIRKLIAVQP--PRSETQRIITDLEKEIAALE 175 (240)
Q Consensus 99 N~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~-~Ak~~R~nK~EYD~LAk~I~~~P--sR~et~~~I~~Le~Ei~~L~ 175 (240)
+.+|.+.-+++.+++++....-+...+++-.-.. -++.+.++|..--.|.+.+.+.+ ...+....+++|+++|.+..
T Consensus 2 ~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~ 81 (330)
T PF07851_consen 2 CEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERR 81 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHH
Confidence 3567777778888888888887777777655443 45566677777777777777653 24455666666666655544
Q ss_pred HH
Q 026335 176 AE 177 (240)
Q Consensus 176 ~e 177 (240)
..
T Consensus 82 ~~ 83 (330)
T PF07851_consen 82 CQ 83 (330)
T ss_pred hh
Confidence 33
No 169
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=32.86 E-value=3.1e+02 Score=23.35 Aligned_cols=45 Identities=20% Similarity=0.233 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 141 KEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLE 186 (240)
Q Consensus 141 K~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~ 186 (240)
---|+.|...| ..++++.....|..|..++..-+.....+...|.
T Consensus 90 ~syY~~L~~~i-d~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~ 134 (184)
T PF05791_consen 90 QSYYDTLVEAI-DQKDKEDLKEIIEDLQDQIQKNQDKVQALINELN 134 (184)
T ss_dssp HHHHHHHHHHH-HHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777 4566777777777777777666666665555554
No 170
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=32.81 E-value=1.6e+02 Score=25.91 Aligned_cols=40 Identities=28% Similarity=0.423 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 161 QRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQ 203 (240)
Q Consensus 161 ~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq 203 (240)
..+|..+.+.|..++.....+...+. +||..|-..+..|+
T Consensus 199 ~~~~~~~~~~i~~~~~rl~~~~~~l~---~qf~~me~~i~~ln 238 (239)
T PF07195_consen 199 NSQIKSLDKQIEDLEERLESKEERLR---KQFSAMESLISQLN 238 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhc
Confidence 45566666666666666555555555 78999888887765
No 171
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=32.78 E-value=7.3e+02 Score=27.58 Aligned_cols=121 Identities=21% Similarity=0.264 Sum_probs=57.2
Q ss_pred HHHHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHHH
Q 026335 75 AKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQL-----EESKIERQHKEECEAIRK 149 (240)
Q Consensus 75 ~e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL-----~~Ak~~R~nK~EYD~LAk 149 (240)
.+.||++|--++-.+.+. ..++.+|......+...+...-..|...|.+. +.++..+..+..=..|++
T Consensus 215 ~e~~L~qLfhvE~~i~k~-------~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e 287 (1141)
T KOG0018|consen 215 KEQFLWELFHVEACIEKA-------NDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAE 287 (1141)
T ss_pred HHHHHHHHhhhhhhHhhh-------hHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555444444442 23444444444444444444444444444322 122333333333333333
Q ss_pred ---HHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 150 ---LIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDEL 202 (240)
Q Consensus 150 ---~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~L 202 (240)
.|.--+.+...-++|...++.|+..+..-......++..++|...+-..-..+
T Consensus 288 rp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~f 343 (1141)
T KOG0018|consen 288 RPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEF 343 (1141)
T ss_pred hhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 12222344445566666666666666666666666666666665554433333
No 172
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=32.23 E-value=74 Score=18.71 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026335 116 QTLQAKADIEDLKKQLEESK 135 (240)
Q Consensus 116 ~i~~~k~~Ie~LK~eL~~Ak 135 (240)
++...+..|.+|+.+|...+
T Consensus 2 E~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECR 21 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 56778899999999998754
No 173
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=32.06 E-value=2.5e+02 Score=22.02 Aligned_cols=44 Identities=25% Similarity=0.222 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 159 ETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDEL 202 (240)
Q Consensus 159 et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~L 202 (240)
.....+.-+++.+..|+.....+...+..-++++..+...+..+
T Consensus 84 ~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~ 127 (129)
T cd00584 84 DLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQEL 127 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556788888999999999999999998889999888887765
No 174
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.88 E-value=5.8e+02 Score=26.20 Aligned_cols=105 Identities=13% Similarity=0.139 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHH
Q 026335 72 EKLAKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEE----SKIERQHKEECEAI 147 (240)
Q Consensus 72 ~~l~e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~----Ak~~R~nK~EYD~L 147 (240)
...+.++..++.-|+..|.-..-....-...++.-..+-.+-+.+|+.++.++..||..++- +..+++-..|-..|
T Consensus 265 re~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l 344 (581)
T KOG0995|consen 265 REKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKL 344 (581)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 44466677777777777776666666666777777777777777888888888888777763 33455555566666
Q ss_pred HHHHhcC-CChHHHHHHHHHHHHHHHHHHH
Q 026335 148 RKLIAVQ-PPRSETQRIITDLEKEIAALEA 176 (240)
Q Consensus 148 Ak~I~~~-PsR~et~~~I~~Le~Ei~~L~~ 176 (240)
-+.++.- |.++...+.+=.++.++++--.
T Consensus 345 ~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~ 374 (581)
T KOG0995|consen 345 KRELNKIQSELDRLSKEVWELKLEIEDFFK 374 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 6666653 4455555555555544444433
No 175
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=31.59 E-value=4.2e+02 Score=24.52 Aligned_cols=88 Identities=16% Similarity=0.250 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 114 NRQTLQAKADIEDLKKQLEESKIE-RQHKEECEAIRKLIAVQPPR--SETQRIITDLEKEIAALEAENTAGSRLLELRKK 190 (240)
Q Consensus 114 e~~i~~~k~~Ie~LK~eL~~Ak~~-R~nK~EYD~LAk~I~~~PsR--~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~Rrk 190 (240)
...+.-...++..++.+|..|+.. ..+|.++..+ -|.. ......|..|+.++.+++.+...+...+....-
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~------d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P 242 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVF------DPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNP 242 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 445666777777777777777543 3344443222 1221 124455666777777666665555443333222
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026335 191 QFALLLHVVDELQNTME 207 (240)
Q Consensus 191 QF~~Ll~~i~~Lq~~l~ 207 (240)
+.-.+-..+..|++.|.
T Consensus 243 ~v~~l~~~i~~l~~~i~ 259 (362)
T TIGR01010 243 QVPSLQARIKSLRKQID 259 (362)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 33333333444444443
No 176
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=31.55 E-value=6e+02 Score=26.27 Aligned_cols=86 Identities=16% Similarity=0.234 Sum_probs=47.6
Q ss_pred hhhhHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh-cCCChHHHHHHH
Q 026335 88 PLLKSKAVIDANLREKENFNELKE--EINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIA-VQPPRSETQRII 164 (240)
Q Consensus 88 s~~K~~~v~~aN~rE~e~Y~~~~~--~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~-~~PsR~et~~~I 164 (240)
.+...+--...-+..++.|..... .+..+....-.++.+++.+|..++..+ ..|..... .||.-.....++
T Consensus 275 qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~------~~l~~~~~~~hP~v~~l~~~~ 348 (726)
T PRK09841 275 QLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFRE------AEISQLYKKDHPTYRALLEKR 348 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhcccCchHHHHHHHH
Confidence 333344444444555566665442 223334444555666666666654322 33333344 578887777788
Q ss_pred HHHHHHHHHHHHHHH
Q 026335 165 TDLEKEIAALEAENT 179 (240)
Q Consensus 165 ~~Le~Ei~~L~~e~~ 179 (240)
+.|+++++.+..+..
T Consensus 349 ~~L~~~~~~l~~~~~ 363 (726)
T PRK09841 349 QTLEQERKRLNKRVS 363 (726)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888887777765543
No 177
>PRK07737 fliD flagellar capping protein; Validated
Probab=31.30 E-value=1.6e+02 Score=29.24 Aligned_cols=44 Identities=9% Similarity=0.162 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 160 TQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTM 206 (240)
Q Consensus 160 t~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l 206 (240)
...+|..+.++|..++...+.++.++ ++||..|=..+..|+.+-
T Consensus 446 l~~~i~~l~~~i~~~~~rl~~~e~ry---~~qf~ale~~~s~mnsq~ 489 (501)
T PRK07737 446 IGKDLNQIETQIDRFQDRLKQIEDRY---YKKFSAMEKAIQKANEQS 489 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 34568888888888888888887777 589999988888887653
No 178
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=31.28 E-value=6.6e+02 Score=26.65 Aligned_cols=27 Identities=37% Similarity=0.537 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 106 FNELKEEINRQTLQAKADIEDLKKQLE 132 (240)
Q Consensus 106 Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~ 132 (240)
|.+....+-..+..++..++.++..+.
T Consensus 169 ~e~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 169 YEKLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443
No 179
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=30.93 E-value=4.1e+02 Score=24.08 Aligned_cols=60 Identities=17% Similarity=0.034 Sum_probs=29.2
Q ss_pred HHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 135 KIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFAL 194 (240)
Q Consensus 135 k~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~ 194 (240)
+.+-+-|..|+..++.......-.-+.+.|++++..+......-..+-.++..-+..|..
T Consensus 130 ~~~~KaK~~Y~~~c~e~e~~~~~~~t~k~leK~~~k~~ka~~~Y~~~v~~l~~~~~~~~~ 189 (269)
T cd07673 130 QALQKSKENYNAKCLEQERLKKEGATQREIEKAAVKSKKATESYKLYVEKYALAKADFEQ 189 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455677777776654321001145566666555555544444444444433334433
No 180
>PHA02682 ORF080 virion core protein; Provisional
Probab=30.92 E-value=1.6e+02 Score=26.54 Aligned_cols=56 Identities=14% Similarity=0.204 Sum_probs=43.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 026335 155 PPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEEQKNL 213 (240)
Q Consensus 155 PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~de~~~~ 213 (240)
-+++-..+.|+.+-.-...|.+|+..+.+-++ +--+.-..+|.+|++.+....++.
T Consensus 208 ~~k~~ikkeladiadsvrdl~aeS~~LtrDIE---~AKstTq~AIdDLRrLl~~~~v~~ 263 (280)
T PHA02682 208 DDKDLIKKELADIADSVRDLNAESLSLTRDIE---NAKSTTQAAIDDLRRLLTGGGVAR 263 (280)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH---HHHhhHHHHHHHHHHHHhcCCccc
Confidence 45666777888888888889999999998888 444567789999999998665543
No 181
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=30.82 E-value=6.6e+02 Score=26.51 Aligned_cols=105 Identities=16% Similarity=0.212 Sum_probs=61.1
Q ss_pred HHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHhc---
Q 026335 78 FLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIE-RQHKEECEAIRKLIAV--- 153 (240)
Q Consensus 78 ~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~-R~nK~EYD~LAk~I~~--- 153 (240)
+...+..++..+.-+.....--..|.++.......+...++....+...||.++.+.|.- -+.=..|..|=..--+
T Consensus 32 ~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQK 111 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQK 111 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 444555566666666666666667777777777777777777777777777777766632 2222355555443322
Q ss_pred -CCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 154 -QPPRSETQRIITDLEKEIAALEAENTAGS 182 (240)
Q Consensus 154 -~PsR~et~~~I~~Le~Ei~~L~~e~~~~~ 182 (240)
.-+=..++...+.++-||..|.++..-+.
T Consensus 112 qvs~Lk~sQvefE~~Khei~rl~Ee~~~l~ 141 (717)
T PF09730_consen 112 QVSVLKQSQVEFEGLKHEIKRLEEEIELLN 141 (717)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12334445555555555555555554433
No 182
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=30.39 E-value=2.4e+02 Score=21.34 Aligned_cols=65 Identities=28% Similarity=0.340 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC----C-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 116 QTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQ----P-PRSETQRIITDLEKEIAALEAENTAGSRLLE 186 (240)
Q Consensus 116 ~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~----P-sR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~ 186 (240)
.......+|..|+.+|+..+.+|. +|-+.++.- | .....-.++.+|-.||+-|+.+...++..+.
T Consensus 9 ~r~~LeqeV~~Lq~~L~~E~~~r~------aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~ 78 (88)
T PF14389_consen 9 RRSALEQEVAELQKQLQEEQDLRR------ALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVL 78 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677889999999999888875 566666532 1 1223344555666666666666655555543
No 183
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.34 E-value=66 Score=25.44 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=15.8
Q ss_pred HHHHHHhHHHHHHHHHHHhc
Q 026335 134 SKIERQHKEECEAIRKLIAV 153 (240)
Q Consensus 134 Ak~~R~nK~EYD~LAk~I~~ 153 (240)
+...|++|++|+.||-.|++
T Consensus 79 ke~irq~rq~~EklAg~lTk 98 (103)
T COG4847 79 KESIRQVRQEVEKLAGDLTK 98 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999987764
No 184
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=30.02 E-value=2e+02 Score=28.18 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 160 TQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTM 206 (240)
Q Consensus 160 t~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l 206 (240)
....|..|+++|+.+....+.+...+. +||..+=..+..|+.+-
T Consensus 411 l~~~i~~l~~~i~~~~~rl~~~e~rl~---~qF~ame~~~s~mns~~ 454 (462)
T PRK08032 411 VNKTLKKLTKQYNAVSDSIDATIARYK---AQFTQLDKLMTSLNSTS 454 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 455677777777777777666666655 79998888888877553
No 185
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=29.79 E-value=93 Score=23.54 Aligned_cols=44 Identities=34% Similarity=0.422 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 026335 116 QTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEA 176 (240)
Q Consensus 116 ~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~ 176 (240)
.|.+.+.++++|+.=|..|++.| -++-....|.+|+.||..+..
T Consensus 4 ~i~eL~~Dl~El~~Ll~~a~R~r-----------------Vk~~L~~ei~klE~eI~~~~~ 47 (79)
T PF09032_consen 4 QIEELQLDLEELKSLLEQAKRKR-----------------VKDLLTNEIRKLETEIKKLKE 47 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCC-----------------HHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHH-----------------HHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777666542 244556677888888888765
No 186
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=29.63 E-value=5.7e+02 Score=25.35 Aligned_cols=32 Identities=19% Similarity=0.146 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 102 EKENFNELKEEINRQTLQAKADIEDLKKQLEE 133 (240)
Q Consensus 102 E~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~ 133 (240)
....|.....++...+.-++..-...+.+|.+
T Consensus 208 ~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~ 239 (511)
T PF09787_consen 208 HYIEYLRESGELQEQLELLKAEGESEEAELQQ 239 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34445555555555555555555555555544
No 187
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=29.53 E-value=3.9e+02 Score=23.42 Aligned_cols=97 Identities=18% Similarity=0.212 Sum_probs=46.9
Q ss_pred hccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC--------
Q 026335 83 STFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQ-------- 154 (240)
Q Consensus 83 a~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~-------- 154 (240)
++++....|..-+.=|+..=...+..-...++..+..+.+++..+|.+.+.--..|++.+. ..+..+..+
T Consensus 111 a~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~--~~~~~L~~Le~~W~~~v 188 (221)
T PF05700_consen 111 AQLEHQRLRLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQE--EAGEELRYLEQRWKELV 188 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHH
Confidence 3344444443322333333333444444555666666666666666666665555555543 123333322
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 155 PPRSETQRIITDLEKEIAALEAENTAG 181 (240)
Q Consensus 155 PsR~et~~~I~~Le~Ei~~L~~e~~~~ 181 (240)
-.--+.+..+..|+.+|.+++.+....
T Consensus 189 ~kn~eie~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 189 SKNLEIEVACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122344555555555555555554443
No 188
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=29.44 E-value=5.6e+02 Score=25.21 Aligned_cols=45 Identities=20% Similarity=0.129 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 156 PRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVD 200 (240)
Q Consensus 156 sR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~ 200 (240)
+-.+..+-+.-...++.++..+...++.++..=+++...|-..+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 125 DLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELN 169 (525)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666666666666554455444433333
No 189
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=29.05 E-value=1.3e+02 Score=21.92 Aligned_cols=27 Identities=30% Similarity=0.241 Sum_probs=21.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 155 PPRSETQRIITDLEKEIAALEAENTAG 181 (240)
Q Consensus 155 PsR~et~~~I~~Le~Ei~~L~~e~~~~ 181 (240)
-+-.|....|.-|+.||+.|+++...-
T Consensus 25 lsV~El~eRIalLq~EIeRlkAe~~kK 51 (65)
T COG5509 25 LSVAELEERIALLQAEIERLKAELAKK 51 (65)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466788889999999999998886543
No 190
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=28.96 E-value=5.3e+02 Score=24.84 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 026335 156 PRSETQRIITDLEKEIAAL------------EAENTAGSRLLE-LRKKQFALLLHVVDELQNTME 207 (240)
Q Consensus 156 sR~et~~~I~~Le~Ei~~L------------~~e~~~~~~kl~-~RrkQF~~Ll~~i~~Lq~~l~ 207 (240)
........|..++.++..+ +.....+...+. .-..++..+-..+..++..+.
T Consensus 244 ~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~ 308 (457)
T TIGR01000 244 QIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIK 308 (457)
T ss_pred HHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666554 333333333322 334455555555555555554
No 191
>PLN02678 seryl-tRNA synthetase
Probab=28.90 E-value=5.7e+02 Score=25.20 Aligned_cols=71 Identities=18% Similarity=0.187 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 026335 100 LREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENT 179 (240)
Q Consensus 100 ~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~ 179 (240)
-.++..+...+..+..++...+.+...+-.++...+ + ....+.+..+....|+++|..|+.+..
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k---~-------------~~~~~~~l~~~~~~Lk~ei~~le~~~~ 95 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLK---I-------------AKEDATELIAETKELKKEITEKEAEVQ 95 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---h-------------CCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666655555442211 1 112334444556666777777766666
Q ss_pred HHHHHHH
Q 026335 180 AGSRLLE 186 (240)
Q Consensus 180 ~~~~kl~ 186 (240)
.+..++.
T Consensus 96 ~~~~~l~ 102 (448)
T PLN02678 96 EAKAALD 102 (448)
T ss_pred HHHHHHH
Confidence 6665554
No 192
>PRK06798 fliD flagellar capping protein; Validated
Probab=28.64 E-value=2.4e+02 Score=27.63 Aligned_cols=43 Identities=12% Similarity=0.297 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 161 QRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTM 206 (240)
Q Consensus 161 ~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l 206 (240)
..+|..+++.++.++..-+.++..+. +||..|-..+..|+.+.
T Consensus 385 ~~~i~~l~~~~~~~e~rl~~~e~~l~---~qf~ale~~ms~lnsQ~ 427 (440)
T PRK06798 385 DNRVSKLDLKITDIDTQNKQKQDNIV---DKYQKLESTLAALDSQL 427 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443 69999999999998776
No 193
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=28.64 E-value=2.2e+02 Score=24.84 Aligned_cols=42 Identities=12% Similarity=0.208 Sum_probs=36.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 98 ANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQ 139 (240)
Q Consensus 98 aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~ 139 (240)
.-..|+.+|..+++.-+.++...+.+-..|..+|....+...
T Consensus 113 ~L~eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLE 154 (179)
T PF13942_consen 113 QLSEERARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLE 154 (179)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345788999999999999999999999999999988765543
No 194
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=28.03 E-value=9.4e+02 Score=27.41 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 171 IAALEAENTAGSRLLELRKKQFALLLHVVDELQNTM 206 (240)
Q Consensus 171 i~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l 206 (240)
|..|+.+...-++.|+.+..+++-|-..+..+..-|
T Consensus 1712 l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1712 LKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444555555555555544444444333
No 195
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=27.98 E-value=3.4e+02 Score=22.31 Aligned_cols=100 Identities=16% Similarity=0.276 Sum_probs=54.1
Q ss_pred chhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHH
Q 026335 86 EIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIIT 165 (240)
Q Consensus 86 E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~ 165 (240)
+-.+..+..-..-...|+...+.-...++.++..+...+..++..|..+-....+-. .....|.
T Consensus 20 e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E----------------~l~rriq 83 (143)
T PF12718_consen 20 EAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE----------------QLNRRIQ 83 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH----------------HHHhhHH
Confidence 333333333344444555555555555555555555555555555555533332222 4456677
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 026335 166 DLEKEIAALEAENTAGSRLLE---LRKKQFALLLHVVDE 201 (240)
Q Consensus 166 ~Le~Ei~~L~~e~~~~~~kl~---~RrkQF~~Ll~~i~~ 201 (240)
-|+.+++...........+|. .+-.+|..=+..+..
T Consensus 84 ~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~ 122 (143)
T PF12718_consen 84 LLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQ 122 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 777777777777766666666 344445444444443
No 196
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=27.91 E-value=2.3e+02 Score=20.32 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026335 113 INRQTLQAKADIEDLKKQLEESK 135 (240)
Q Consensus 113 Ie~~i~~~k~~Ie~LK~eL~~Ak 135 (240)
|..+...++...-.+...|..|.
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE 38 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAE 38 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555443
No 197
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=27.72 E-value=7.3e+02 Score=25.99 Aligned_cols=119 Identities=16% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 104 ENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSR 183 (240)
Q Consensus 104 e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~ 183 (240)
+....-..++|.+|...+.+......++..+....+.=..|+ .+.+..++.|-..|..++++...++.
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~------------~e~~~~~e~L~~aL~amqdk~~~LE~ 608 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYE------------KESEKDTEVLMSALSAMQDKNQHLEN 608 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hhhhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHhhchHHHHHH-HHHhcCCcCCCCCCC
Q 026335 184 LLELRKKQFALLLHVVDELQNTME------EEQKNLIEEMRM-AEEQKGGMEDASGGS 234 (240)
Q Consensus 184 kl~~RrkQF~~Ll~~i~~Lq~~l~------de~~~~~~e~~~-~~~~~~~~~~~~~~~ 234 (240)
.|..=-+----|++++.+-++.|+ --.+-+..||.+ ..+.-.-|.+.+..+
T Consensus 609 sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~p~~~~~~ 666 (697)
T PF09726_consen 609 SLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVMPSDSYCS 666 (697)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
No 198
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=27.62 E-value=5.7e+02 Score=24.70 Aligned_cols=103 Identities=21% Similarity=0.226 Sum_probs=61.4
Q ss_pred HHHHHHHhccchhh--hhHHHHHHHhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 026335 76 KAFLQELSTFEIPL--LKSKAVIDANLREKENFN------ELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAI 147 (240)
Q Consensus 76 e~~l~eLa~~E~s~--~K~~~v~~aN~rE~e~Y~------~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~L 147 (240)
.+++.+|-.+.+.+ .|.++....-..++.-.. .....|..=|..... ....|..|... -.+..||.
T Consensus 306 ~eIL~~f~~~R~~~~~kR~~~~l~kl~~~l~il~gl~~~~~~idfIi~vI~~s~~-~~~~k~~L~~~----L~~~q~~y- 379 (426)
T PF00521_consen 306 KEILKEFYEFRLEYYQKRKQYLLEKLEERLHILEGLIKALNKIDFIIEVIRGSID-KNKAKKDLIEE----LSEEQADY- 379 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSS-HHHHHHHHHHH----HCHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-chHHHHHHHhh----chHHHHHH-
Confidence 44555555554443 334444444444444444 333333333333322 33444444443 11145665
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 148 RKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLEL 187 (240)
Q Consensus 148 Ak~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~ 187 (240)
|..-|=+.=|...+++|.+|+.+++.+.+.+..++..
T Consensus 380 ---LL~m~L~~LT~~e~~kL~~e~~~l~~ei~~l~~~~~~ 416 (426)
T PF00521_consen 380 ---LLSMPLRRLTKEEIEKLQKEIKELEKEIEELEKILPK 416 (426)
T ss_dssp ---HHTSBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ---HHhchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677989999999999999999999999999998885
No 199
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=27.37 E-value=4.2e+02 Score=23.08 Aligned_cols=41 Identities=5% Similarity=0.129 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHhc
Q 026335 113 INRQTLQAKADIEDLKKQLEESKIE-RQHKEECEAIRKLIAV 153 (240)
Q Consensus 113 Ie~~i~~~k~~Ie~LK~eL~~Ak~~-R~nK~EYD~LAk~I~~ 153 (240)
|+.-|......+..++..|..+... +.-..+|+.+...|..
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~ 70 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVAD 70 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444332 2223344444444443
No 200
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=27.26 E-value=4.5e+02 Score=27.44 Aligned_cols=38 Identities=26% Similarity=0.353 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 100 LREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIE 137 (240)
Q Consensus 100 ~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~ 137 (240)
.-|++.|+...+++...|.+.+.+..+||...++|+..
T Consensus 106 ~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~ 143 (907)
T KOG2264|consen 106 NSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQ 143 (907)
T ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHH
Confidence 45788888888999999999999999999999888764
No 201
>PRK11546 zraP zinc resistance protein; Provisional
Probab=26.99 E-value=3.8e+02 Score=22.48 Aligned_cols=61 Identities=18% Similarity=0.293 Sum_probs=33.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 026335 97 DANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEA 176 (240)
Q Consensus 97 ~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~ 176 (240)
.+...+...++.+..+...+....|.++-.-+. ||.+| .-+..|+. +.|.+|.+||..|+.
T Consensus 43 ~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~-------------ELnAL--l~~~~pD~----~kI~aL~kEI~~Lr~ 103 (143)
T PRK11546 43 PLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRY-------------EYNAL--LTANPPDS----SKINAVAKEMENLRQ 103 (143)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHH--HcCCCCCH----HHHHHHHHHHHHHHH
Confidence 355666666766666665555555544433333 44443 22233443 357778888887765
No 202
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=26.80 E-value=2.3e+02 Score=24.37 Aligned_cols=44 Identities=23% Similarity=0.367 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Q 026335 164 ITDLEKEIAALEAENTAGSRLLELRKKQFALL-----LHVVDELQNTME 207 (240)
Q Consensus 164 I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~L-----l~~i~~Lq~~l~ 207 (240)
-+.|+.||..+++|...+.+.|..+.++-+-| +..+.+|+..|.
T Consensus 31 ~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqnls 79 (162)
T PF04201_consen 31 REELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQNLS 79 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHHHH
Confidence 35566666666666666666666555555444 233445554443
No 203
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=26.63 E-value=3.4e+02 Score=21.76 Aligned_cols=86 Identities=22% Similarity=0.305 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 104 ENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSR 183 (240)
Q Consensus 104 e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~ 183 (240)
+.....+..+........-.|..++.-+. .-..-++.|+.+...| ...|+.++++|+.|+.+......
T Consensus 42 e~~~~~~e~~l~~l~~~e~~~~k~q~~~~---~n~~e~e~Y~~~~~~i---------~~~i~~~k~~ie~lk~~L~~ak~ 109 (139)
T PF05615_consen 42 EESQFLYERLLKELAQFEFSILKSQLILE---MNKRERENYEQLNEEI---------EQEIEQAKKEIEELKEELEEAKR 109 (139)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666655544433 3344566888876554 56777888888888777665544
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026335 184 LLELRKKQFALLLHVVDEL 202 (240)
Q Consensus 184 kl~~RrkQF~~Ll~~i~~L 202 (240)
... .|.+|..|-..|...
T Consensus 110 ~r~-~k~eyd~La~~I~~~ 127 (139)
T PF05615_consen 110 VRQ-NKEEYDALAKKINSQ 127 (139)
T ss_pred HHH-HHHHHHHHHHHHhcC
Confidence 444 455888888777654
No 204
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=26.51 E-value=2.9e+02 Score=20.98 Aligned_cols=41 Identities=22% Similarity=0.243 Sum_probs=30.3
Q ss_pred HHHHHHh----cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 146 AIRKLIA----VQPPRSETQRIITDLEKEIAALEAENTAGSRLLE 186 (240)
Q Consensus 146 ~LAk~I~----~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~ 186 (240)
.+++.|. .-+++++.......+.++|..++.+...++..+.
T Consensus 54 ~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 54 ELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp HHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 3367888888888888898888888877777665
No 205
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=26.26 E-value=5.3e+02 Score=23.91 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHhcC
Q 026335 104 ENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHK-EECEAIRKLIAVQ 154 (240)
Q Consensus 104 e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK-~EYD~LAk~I~~~ 154 (240)
+.++.+..+++.-+..++...+.||..|+..+....-. +-+++|-....+.
T Consensus 92 eelqkl~~eLe~vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~el 143 (268)
T PF11802_consen 92 EELQKLISELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEEL 143 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888889999999999999999999876544 4456665555543
No 206
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=26.22 E-value=2.5e+02 Score=20.15 Aligned_cols=44 Identities=23% Similarity=0.303 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 165 TDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEE 208 (240)
Q Consensus 165 ~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~d 208 (240)
..+..||...+..+.....+|..=.+++.-|...|..|+.-+++
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777788888888888888888888888888888877764
No 207
>PRK09039 hypothetical protein; Validated
Probab=26.13 E-value=5.6e+02 Score=24.13 Aligned_cols=50 Identities=18% Similarity=0.134 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 159 ETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEE 208 (240)
Q Consensus 159 et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~d 208 (240)
+....+..|+.+|+.|+.....++..|..=..+-.-.-..|.+|+..|+.
T Consensus 134 e~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 134 RALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNV 183 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777777777777777777777776555555555555555555553
No 208
>PRK11546 zraP zinc resistance protein; Provisional
Probab=25.87 E-value=3e+02 Score=23.09 Aligned_cols=26 Identities=19% Similarity=0.487 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 114 NRQTLQAKADIEDLKKQLEESKIERQ 139 (240)
Q Consensus 114 e~~i~~~k~~Ie~LK~eL~~Ak~~R~ 139 (240)
...|..+.++|.+|+.+|.+-+....
T Consensus 88 ~~kI~aL~kEI~~Lr~kL~e~r~~~~ 113 (143)
T PRK11546 88 SSKINAVAKEMENLRQSLDELRVKRD 113 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34589999999999999987766433
No 209
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=25.85 E-value=3.5e+02 Score=22.64 Aligned_cols=49 Identities=22% Similarity=0.225 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
Q 026335 160 TQRIITDLEKEIAALEAENTAGSRLL---------------ELRKKQFALLLHVVDELQNTMEE 208 (240)
Q Consensus 160 t~~~I~~Le~Ei~~L~~e~~~~~~kl---------------~~RrkQF~~Ll~~i~~Lq~~l~d 208 (240)
|..-+.+|+.||+.|..+...+...+ ...|.....+-.-|..|...|..
T Consensus 9 T~eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~~ 72 (158)
T PRK05892 9 APAARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLRT 72 (158)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556677777777766555554443 34455566666777777777763
No 210
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=25.73 E-value=2.9e+02 Score=22.97 Aligned_cols=128 Identities=21% Similarity=0.242 Sum_probs=71.7
Q ss_pred HHHHHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Q 026335 74 LAKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAV 153 (240)
Q Consensus 74 l~e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~ 153 (240)
++-..|.++-..|-.+.+ .+-.|. ...+|..++..++..+..++..|+.|+.=++.--. .--...||.+..+|.+
T Consensus 3 lf~~~L~d~y~aE~Q~~~--al~~m~--~~a~~peLk~~l~~H~~eT~~qi~rLe~if~~lg~-~~~~~~c~~m~gli~e 77 (147)
T cd07909 3 LFVHELRDLYSAEKQLVK--ALPKMA--KAATSEELKEAFESHLEETEGQVERLEQIFESLGE-KPEGKKCKAMEGLIKE 77 (147)
T ss_pred hHHHHHHHHHHHHHHHHH--HHHHHH--HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCccCcchHHHHHHHH
Confidence 345567777777777666 445554 77899999999999999999999999877664211 1122344555544432
Q ss_pred -------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026335 154 -------QPPRSETQRIITDLEKEIAALEAENTAGSRL--LELRKKQFALLLHVVDELQNTMEEEQKN 212 (240)
Q Consensus 154 -------~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~k--l~~RrkQF~~Ll~~i~~Lq~~l~de~~~ 212 (240)
.++..---..|-..-.-++.. +...|... |..+-.. -++..-|+.+|++|...
T Consensus 78 ~~~~~~~~~~~~v~Da~li~aaq~vEHy--EIA~YgtL~~~A~~lG~----~e~a~lL~~~L~EE~~~ 139 (147)
T cd07909 78 AEELIEETGDSAVLDAALIAAAQKVEHY--EIAGYGTLRALAKLLGL----DDAADLLQETLDEEKAT 139 (147)
T ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHH
Confidence 222221112211222223333 33344333 3321111 35677788888876653
No 211
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=25.34 E-value=4.9e+02 Score=23.19 Aligned_cols=64 Identities=16% Similarity=0.231 Sum_probs=48.9
Q ss_pred HHHHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 75 AKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIER 138 (240)
Q Consensus 75 ~e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R 138 (240)
++.++..=..++..+.....-.++-.+|+..+.+.+.+|...+.....+|+.-|.+-+..|..-
T Consensus 40 ~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~~~e~~r~~fekekqq~ 103 (228)
T PRK06800 40 HEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIEAARQQFQKEQQET 103 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666666666667789999999999999999999999999998888777653
No 212
>PRK04325 hypothetical protein; Provisional
Probab=24.87 E-value=2.8e+02 Score=20.32 Aligned_cols=50 Identities=22% Similarity=0.212 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 159 ETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEE 208 (240)
Q Consensus 159 et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~d 208 (240)
..+..|..|+-.++-++...+.+...+-.-.++...|-..+..|...+.+
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999999999988888888887777777666653
No 213
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=24.86 E-value=3.6e+02 Score=22.50 Aligned_cols=41 Identities=20% Similarity=0.309 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHh
Q 026335 112 EINRQTLQAKADIEDLKKQLEESKIER-QHKEECEAIRKLIA 152 (240)
Q Consensus 112 ~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R-~nK~EYD~LAk~I~ 152 (240)
+++.+-.....+++.|+.++...+.++ .+|..|++|+.-+.
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344444555555666666666555555 46788999988763
No 214
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=24.82 E-value=9.9e+02 Score=26.57 Aligned_cols=125 Identities=18% Similarity=0.200 Sum_probs=77.5
Q ss_pred HHHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHH
Q 026335 76 KAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQ----LEESKIERQHKEECEAIRKLI 151 (240)
Q Consensus 76 e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~e----L~~Ak~~R~nK~EYD~LAk~I 151 (240)
..+-.+|+..+.-+.+++. |++.-...-.++.+++...+.+|..|+.+ |..|+.-+.++-+-|+|...-
T Consensus 173 ~hL~velAdle~kir~Lrq-------ElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~a 245 (1195)
T KOG4643|consen 173 LHLEVELADLEKKIRTLRQ-------ELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQA 245 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhh
Confidence 3466677777777776554 34444455555666666666666666655 667888899999999887655
Q ss_pred hcC-CChHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 026335 152 AVQ-PPRSE-------TQRIITDLEKEIAALEAENTAGSRLLELRKKQF--ALLLHVVDELQNTME 207 (240)
Q Consensus 152 ~~~-PsR~e-------t~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF--~~Ll~~i~~Lq~~l~ 207 (240)
-.. |.-.+ .....+.|+.+=+-|.++++-+...|+.=|+|= +.+=..|-.|+..|+
T Consensus 246 er~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~ 311 (1195)
T KOG4643|consen 246 ERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLD 311 (1195)
T ss_pred hcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHH
Confidence 432 11111 234556666666666666766666666555544 556666666665554
No 215
>PRK14160 heat shock protein GrpE; Provisional
Probab=24.62 E-value=5e+02 Score=23.07 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHH--HhhchHHHHHH
Q 026335 192 FALLLHVVDELQNTMEE--EQKNLIEEMRM 219 (240)
Q Consensus 192 F~~Ll~~i~~Lq~~l~d--e~~~~~~e~~~ 219 (240)
..-||.++..|.+.+.- +..+....+.+
T Consensus 114 ~~~LLpVlDnLerAl~~~~~~~~l~~Gv~m 143 (211)
T PRK14160 114 LKELLPVLDNLERAAAVEGSVEDLKKGIEM 143 (211)
T ss_pred HHHHhhHHhHHHHHHhcccchhHHHHHHHH
Confidence 44567888888888753 22234445555
No 216
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=24.46 E-value=5.2e+02 Score=23.17 Aligned_cols=70 Identities=20% Similarity=0.269 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHH
Q 026335 108 ELKEEINRQTLQAKADIEDLKKQLEESK-------IERQHKEECEAIRKLIAV---QPPRSETQRIITDLEKEIAALEAE 177 (240)
Q Consensus 108 ~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak-------~~R~nK~EYD~LAk~I~~---~PsR~et~~~I~~Le~Ei~~L~~e 177 (240)
-.-.+|-+.+-....+-+.++....... ..++.=.+++.||..|.. +|+.......+++++..++.+...
T Consensus 179 ~~a~Dl~E~~~as~~~y~~l~~~f~~~~~l~~~~~~l~~~a~~l~~ia~ai~~~~~~~~~~~l~~~l~~l~~~l~~~~~~ 258 (284)
T PF12805_consen 179 FEAVDLFERALASHYDYEELREQFKHSDVLFRFQRLLEQLAQALRQIAQAILRGRPYHHRNRLKRALEALEESLEFLRQQ 258 (284)
T ss_pred HHHHHHHHHHHhccccHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 3444555566666667777777655443 344445588888888884 345666777777777777777655
No 217
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=24.43 E-value=3.6e+02 Score=21.34 Aligned_cols=95 Identities=23% Similarity=0.349 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 026335 104 ENFNELKEEINRQTLQAKADIEDLKKQLEESKIE----RQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENT 179 (240)
Q Consensus 104 e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~----R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~ 179 (240)
..|-.+...|...|......+..+..-....... ...|..-+.+. .++......+...|..|.....
T Consensus 2 ~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~---------~~~~~~~~~ik~~lk~l~~~~~ 72 (151)
T cd00179 2 EEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLV---------QEIKKLAKEIKGKLKELEESNE 72 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777777776666555544433322 12233333333 3344445555555555554433
Q ss_pred HHH-----HHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 026335 180 AGS-----RLLELRK-------KQFALLLHVVDELQNTME 207 (240)
Q Consensus 180 ~~~-----~kl~~Rr-------kQF~~Ll~~i~~Lq~~l~ 207 (240)
... .....|+ +.|..+|...+.+|....
T Consensus 73 ~~~~~~~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~ 112 (151)
T cd00179 73 QNEALNGSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYR 112 (151)
T ss_pred HhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 0122233 456666666666665554
No 218
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=24.25 E-value=4.6e+02 Score=24.41 Aligned_cols=46 Identities=26% Similarity=0.164 Sum_probs=37.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 155 PPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVD 200 (240)
Q Consensus 155 PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~ 200 (240)
.+|.--...|.+|++-...+......++..+..+++|-+.+-+.|+
T Consensus 220 Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~ 265 (279)
T KOG0837|consen 220 KCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVM 265 (279)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3566667789999999999999999999999999888776655554
No 219
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=24.15 E-value=6.6e+02 Score=24.31 Aligned_cols=30 Identities=33% Similarity=0.286 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 157 RSETQRIITDLEKEIAALEAENTAGSRLLE 186 (240)
Q Consensus 157 R~et~~~I~~Le~Ei~~L~~e~~~~~~kl~ 186 (240)
.++...+...|+++|.+|+.+...++.++.
T Consensus 68 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 97 (425)
T PRK05431 68 AEALIAEVKELKEEIKALEAELDELEAELE 97 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666666666655555443
No 220
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=24.04 E-value=3e+02 Score=20.26 Aligned_cols=55 Identities=24% Similarity=0.226 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 111 EEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRL 184 (240)
Q Consensus 111 ~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~k 184 (240)
.+++..|..+-..|..|+.+.+.-+. ++..|. .....|..+...|..++......
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke------~n~~L~-------------~e~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKE------KNNELK-------------EENEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhHH-------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666665554332 233332 34456666666666555444433
No 221
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=23.92 E-value=9.6e+02 Score=26.09 Aligned_cols=50 Identities=10% Similarity=0.133 Sum_probs=32.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 026335 154 QPPRSETQRIITDLEKEIAALEAENTAGSRLLE---LRKKQFALLLHVVDELQ 203 (240)
Q Consensus 154 ~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~---~RrkQF~~Ll~~i~~Lq 203 (240)
.|+..+....+..++.++..+......+...+. ..+.++..+...+..++
T Consensus 821 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 873 (1047)
T PRK10246 821 TVTVEQIQQELAQLAQQLRENTTRQGEIRQQLKQDADNRQQQQALMQQIAQAT 873 (1047)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777788888888888777777666665543 34445555555554444
No 222
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.89 E-value=5.5e+02 Score=24.79 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=13.5
Q ss_pred HHHHHHHhHHHHHHHHHHHhcCCChH
Q 026335 133 ESKIERQHKEECEAIRKLIAVQPPRS 158 (240)
Q Consensus 133 ~Ak~~R~nK~EYD~LAk~I~~~PsR~ 158 (240)
..+.-++.+++-+.+-..+....-|+
T Consensus 216 ~eklR~r~eeeme~~~aeq~slkRt~ 241 (365)
T KOG2391|consen 216 REKLRRRREEEMERLQAEQESLKRTE 241 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33444555556666555555544333
No 223
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=23.67 E-value=5.3e+02 Score=23.01 Aligned_cols=95 Identities=19% Similarity=0.203 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 101 REKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTA 180 (240)
Q Consensus 101 rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~ 180 (240)
.++.....-...+...+..+...|.+++..+...+..-..-+--..+-+.+...-+ ......++.++.-|++.++.-..
T Consensus 106 ~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~-~sa~~~fer~e~kiee~ea~a~~ 184 (225)
T COG1842 106 AELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS-SSAMAAFERMEEKIEEREARAEA 184 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555566666666667777777776666666666666666666666655 78888889888888888877766
Q ss_pred HHH----HHHHHHHHHHHHH
Q 026335 181 GSR----LLELRKKQFALLL 196 (240)
Q Consensus 181 ~~~----kl~~RrkQF~~Ll 196 (240)
+.. .=..+.++|.-+-
T Consensus 185 ~~el~~~~~~dl~~e~a~~~ 204 (225)
T COG1842 185 AAELAEGSGDDLDKEFAQAG 204 (225)
T ss_pred hHHhhccCcccHHHHHHHhc
Confidence 663 2234455665543
No 224
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=23.55 E-value=1.9e+02 Score=21.90 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 158 SETQRIITDLEKEIAALEAENTAGSRLLELRKKQF 192 (240)
Q Consensus 158 ~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF 192 (240)
+.....+.+|+++|..|+.+...+...+.--+.+-
T Consensus 66 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 66 ESDSPELKELEEELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455777777777777777777766666544443
No 225
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=23.51 E-value=3.8e+02 Score=25.54 Aligned_cols=48 Identities=23% Similarity=0.275 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 160 TQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTME 207 (240)
Q Consensus 160 t~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~ 207 (240)
....|..++..|..++.....+...+....++...+.+.+.+|..-++
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsR 189 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSR 189 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 346788888888888888888888888888888889999999998766
No 226
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=23.42 E-value=4e+02 Score=21.54 Aligned_cols=59 Identities=25% Similarity=0.327 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHH
Q 026335 116 QTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPP-RSETQRIITDLEKEIAALEA 176 (240)
Q Consensus 116 ~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~Ps-R~et~~~I~~Le~Ei~~L~~ 176 (240)
++..+......++.++..+ ...+|.+=|.+.+..+..-. +......+-+-+.||..|+.
T Consensus 88 e~~~~~~~~~~l~~~~~~~--~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~ 147 (151)
T PF11559_consen 88 ELASAEEKERQLQKQLKSL--EAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKE 147 (151)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444443322 23344444555555544333 22334455555556555544
No 227
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=23.40 E-value=2.9e+02 Score=23.30 Aligned_cols=49 Identities=22% Similarity=0.238 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 026335 159 ETQRIITDLEKEIAALEAENTAGSRL--LELRKKQFALLLHVVDELQNTME 207 (240)
Q Consensus 159 et~~~I~~Le~Ei~~L~~e~~~~~~k--l~~RrkQF~~Ll~~i~~Lq~~l~ 207 (240)
=|..-+.+|++||+.|.++....... |.+.|++-..+-.-|..|+..|.
T Consensus 31 lT~~G~~~L~~El~~L~~~i~~Ar~~GDlsEak~~~~~~e~rI~~L~~~L~ 81 (160)
T PRK06342 31 VTEAGLKALEDQLAQARAAYEAAQAIEDVNERRRQMARPLRDLRYLAARRR 81 (160)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHc
Confidence 46778899999999997544333221 33456677777777888888876
No 228
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=23.36 E-value=4.3e+02 Score=21.81 Aligned_cols=42 Identities=12% Similarity=0.270 Sum_probs=36.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 96 IDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIE 137 (240)
Q Consensus 96 ~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~ 137 (240)
...+...+..|+....+++.++..=..+|..||.+|..+..-
T Consensus 82 ~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~ 123 (131)
T PF04859_consen 82 IQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRA 123 (131)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888999999999999999999999999999987654
No 229
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=23.25 E-value=3.4e+02 Score=27.53 Aligned_cols=78 Identities=13% Similarity=0.217 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHH-------HHHHhc----CCChH-HHHHHHHHH
Q 026335 101 REKENFNELKEEINRQTLQAKADIEDLKKQLEE-SKIERQHKEECEAI-------RKLIAV----QPPRS-ETQRIITDL 167 (240)
Q Consensus 101 rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~-Ak~~R~nK~EYD~L-------Ak~I~~----~PsR~-et~~~I~~L 167 (240)
.....|.++...++..++.+..-|..|+.+|.. |..+.+||+.-|-| ...|++ |.+-. .....|.+|
T Consensus 421 ~~~~~~~~L~~~~~~d~~~~~~~i~~l~~~~~sl~~~v~qnr~~lD~l~a~~Gg~C~~l~~~CC~y~~~s~~v~~~i~~l 500 (561)
T PF00429_consen 421 VSTQQYRQLSNALEEDLQALEDSISALQEQLTSLAEVVLQNRRALDLLTAEQGGLCAALKEECCFYINHSGIVRDSIKKL 500 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHTS-------------HHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhhcCCchhhhCCceEEEECCccchhHHHHHH
Confidence 348899999999999999999999999999975 56699999988854 344443 55422 334566666
Q ss_pred HHHHHHHHHHH
Q 026335 168 EKEIAALEAEN 178 (240)
Q Consensus 168 e~Ei~~L~~e~ 178 (240)
++.+...+.+.
T Consensus 501 ~e~~~~~~~~~ 511 (561)
T PF00429_consen 501 RERLEKRKRES 511 (561)
T ss_dssp TT---HHHHHH
T ss_pred HHHHHhhhhhc
Confidence 66665554443
No 230
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=23.21 E-value=3.3e+02 Score=24.15 Aligned_cols=45 Identities=27% Similarity=0.375 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Q 026335 163 IITDLEKEIAALEAENTAGSRLLELRKKQFALL-----LHVVDELQNTME 207 (240)
Q Consensus 163 ~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~L-----l~~i~~Lq~~l~ 207 (240)
.-+.|..||+.+++|...+...|..|.++-.-| |..+.+|...|.
T Consensus 45 Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLGlt~~~EL~qnis 94 (208)
T KOG4010|consen 45 EKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKLGLTVLKELKQNIS 94 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 345677777778888888888888777776666 555666665554
No 231
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=23.16 E-value=5.1e+02 Score=22.66 Aligned_cols=73 Identities=16% Similarity=0.254 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHH
Q 026335 104 ENFNELKEEINRQTLQAKADIEDLKK-----QLEESKIERQHKEECEAIRKLIAV-QPPRSETQRIITDLEKEIAALEA 176 (240)
Q Consensus 104 e~Y~~~~~~Ie~~i~~~k~~Ie~LK~-----eL~~Ak~~R~nK~EYD~LAk~I~~-~PsR~et~~~I~~Le~Ei~~L~~ 176 (240)
..-+.....++..+...+.+|+++-. ++..+...+.....|-.+....-. --.-......|..++.+...++.
T Consensus 139 ~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 139 EQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455566666667777777666654 444444444444444443333322 23445555667777766666554
No 232
>PRK02793 phi X174 lysis protein; Provisional
Probab=22.83 E-value=3.1e+02 Score=20.02 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 158 SETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEE 208 (240)
Q Consensus 158 ~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~d 208 (240)
.+.+..|..|+-.++-++.-.+.+...+-.-.++...|-..+..|...|.+
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346778899999999999988999888887777777777777777666653
No 233
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=22.54 E-value=5.3e+02 Score=22.60 Aligned_cols=36 Identities=8% Similarity=0.071 Sum_probs=23.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 155 PPRSETQRIITDLEKEIAALEAENTAGSRLLELRKK 190 (240)
Q Consensus 155 PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~Rrk 190 (240)
-|-.+.+..|......+..+......+...|..-..
T Consensus 78 ~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~ 113 (240)
T PF12795_consen 78 LSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQT 113 (240)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456666777777777777776666666666554333
No 234
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=22.51 E-value=66 Score=25.67 Aligned_cols=16 Identities=6% Similarity=0.152 Sum_probs=8.9
Q ss_pred HHHHHHHhHHHHHHHH
Q 026335 133 ESKIERQHKEECEAIR 148 (240)
Q Consensus 133 ~Ak~~R~nK~EYD~LA 148 (240)
..++.|.++..||.+.
T Consensus 64 y~~Q~k~Ye~a~~~~~ 79 (104)
T PF11460_consen 64 YMQQRKDYEEAVDQLT 79 (104)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4455566666665544
No 235
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=22.48 E-value=8.5e+02 Score=24.96 Aligned_cols=137 Identities=23% Similarity=0.205 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 026335 71 CEKLAKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKL 150 (240)
Q Consensus 71 ~~~l~e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~ 150 (240)
.+.+|+-|-.|.++-...-.++..+...-.+-.++-..+..+|+.=-+.-+-.=.++-....-.+....-+..||.+.+.
T Consensus 290 ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~ 369 (570)
T COG4477 290 IESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILEN 369 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444444444333333333333333322211111111122222223333344445567777777
Q ss_pred HhcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH------HHHHHHHHHHHHHHHHH
Q 026335 151 IAVQ-PPRSETQRIITDLEKEIAALEAENTAGSRLLEL-RKK------QFALLLHVVDELQNTME 207 (240)
Q Consensus 151 I~~~-PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~-Rrk------QF~~Ll~~i~~Lq~~l~ 207 (240)
|... -+=+..+..++.+.+.|...+.++..+...|.. |+. -..++...++...|-+.
T Consensus 370 ~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~me 434 (570)
T COG4477 370 IEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYME 434 (570)
T ss_pred hhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7653 567788888888999999998888888877764 433 34455556666665554
No 236
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=22.48 E-value=2.7e+02 Score=19.28 Aligned_cols=36 Identities=33% Similarity=0.428 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 161 QRIITDLEKEIAALEAENTAGSRLLELRKKQFALLL 196 (240)
Q Consensus 161 ~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll 196 (240)
...|..|+..+..|..++..+...+..=+.....|-
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577777777777777777665554444444443
No 237
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=22.35 E-value=4.8e+02 Score=22.42 Aligned_cols=9 Identities=22% Similarity=0.242 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 026335 101 REKENFNEL 109 (240)
Q Consensus 101 rE~e~Y~~~ 109 (240)
.+.++|..+
T Consensus 37 ~~~~r~~~L 45 (265)
T TIGR00999 37 KTYEREKKL 45 (265)
T ss_pred HHHHHHHHH
Confidence 344444444
No 238
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=22.33 E-value=5.2e+02 Score=22.44 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 103 KENFNELKEEINRQTLQAKADIEDLKKQLEES 134 (240)
Q Consensus 103 ~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~A 134 (240)
..+|.+....=..-|...+.+|+++|......
T Consensus 15 K~YYndIT~~NL~lIksLKeei~emkk~e~~~ 46 (201)
T PF13851_consen 15 KNYYNDITLNNLELIKSLKEEIAEMKKKEERN 46 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777777888888888888755443
No 239
>PRK02119 hypothetical protein; Provisional
Probab=22.03 E-value=3.3e+02 Score=19.98 Aligned_cols=50 Identities=16% Similarity=0.106 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 159 ETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEE 208 (240)
Q Consensus 159 et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~d 208 (240)
..+..|..|+--++-++.....+...+-.-.++...|-..+..|...+.+
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888888888888888888888887777777777777777666653
No 240
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=21.88 E-value=3.9e+02 Score=25.48 Aligned_cols=12 Identities=17% Similarity=0.127 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHH
Q 026335 140 HKEECEAIRKLI 151 (240)
Q Consensus 140 nK~EYD~LAk~I 151 (240)
+|.-|+.+|++|
T Consensus 123 ek~t~~l~A~vl 134 (371)
T KOG3958|consen 123 EKLTPVLLAKVL 134 (371)
T ss_pred hhcchHHHHHHH
Confidence 444555555544
No 241
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=21.75 E-value=1.4e+02 Score=27.20 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=23.7
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 153 VQPPRSETQRIITDLEKEIAALEAENTAGS 182 (240)
Q Consensus 153 ~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~ 182 (240)
..+.-++..++|.+||.||..|..+.+++-
T Consensus 113 ~~~~~~~AlqKIsALEdELs~LRaQIA~IV 142 (253)
T PF05308_consen 113 DLPANEAALQKISALEDELSRLRAQIAKIV 142 (253)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777888999999999999977665543
No 242
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=21.63 E-value=5.6e+02 Score=22.58 Aligned_cols=140 Identities=16% Similarity=0.271 Sum_probs=0.0
Q ss_pred hccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHhcCCChHHH
Q 026335 83 STFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKE--ECEAIRKLIAVQPPRSET 160 (240)
Q Consensus 83 a~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~--EYD~LAk~I~~~PsR~et 160 (240)
..++.-..|...+..+-..|... ....|+.-......++.+|...+...+..|..|+ -|..|...++..-..=+.
T Consensus 92 ~~l~~L~~ri~~L~~~i~ee~~~---r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~i~~ 168 (247)
T PF06705_consen 92 SRLDSLNDRIEALEEEIQEEKEE---RPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEENRLQEKIEK 168 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-------HHhhchHHHHHH-HHHhcCCc
Q 026335 161 QRIITDLEKEIAALEAENTAGSRLLELRKKQFAL-LLHVVDELQNTME-------EEQKNLIEEMRM-AEEQKGGM 227 (240)
Q Consensus 161 ~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~-Ll~~i~~Lq~~l~-------de~~~~~~e~~~-~~~~~~~~ 227 (240)
+..-. +..+..|..+...+-..-..--.+|+. ++..|..|+..|. ..|..+.+-+-. +..+..|+
T Consensus 169 Ek~~R--e~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~~R~~~Dd~Iv~aln~yt~~lQ~~L 242 (247)
T PF06705_consen 169 EKNTR--ESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQEREQSDDDIVQALNHYTKALQDGL 242 (247)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
No 243
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=21.62 E-value=6.3e+02 Score=23.79 Aligned_cols=33 Identities=12% Similarity=0.092 Sum_probs=16.8
Q ss_pred HHHHhccchhhhhHHHHHHHhHHHHHHHHHHHH
Q 026335 79 LQELSTFEIPLLKSKAVIDANLREKENFNELKE 111 (240)
Q Consensus 79 l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~ 111 (240)
...+++.+..+.+.+.....-..+.++|..+..
T Consensus 102 ~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~ 134 (397)
T PRK15030 102 QATYDSAKGDLAKAQAAANIAQLTVNRYQKLLG 134 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444556666766643
No 244
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=21.58 E-value=9.7e+02 Score=25.29 Aligned_cols=67 Identities=12% Similarity=0.047 Sum_probs=53.9
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 026335 147 IRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEEQKNL 213 (240)
Q Consensus 147 LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~de~~~~ 213 (240)
=|+.|-.-+=|.=+.-.+.++++|+++|.++...+...|....++..+|...+.++...--++..+.
T Consensus 409 QaeaIL~mrL~~L~~le~~~i~~E~~~l~~e~~~l~~~L~~~~~~~~~i~~el~~~~~~~g~~RRt~ 475 (735)
T TIGR01062 409 QAEAILNLRLRHLAKLEEHAIIDEQSELEKERAILEKILKSERELNQLVKKEIQADATKYGLARRSS 475 (735)
T ss_pred HHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCCee
Confidence 3555666666666667788999999999999999999999999999999999999887766544443
No 245
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=21.47 E-value=2.5e+02 Score=29.08 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 112 EINRQTLQAKADIEDLKKQLEESKIERQ 139 (240)
Q Consensus 112 ~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~ 139 (240)
..+.+++.....|.+++.+|.+++....
T Consensus 633 ~h~~smekl~~kI~~~keql~e~~~~l~ 660 (759)
T KOG0981|consen 633 THEKSMEKLAEKIKAKKEQLKEAEAELK 660 (759)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777777666544
No 246
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=21.43 E-value=8.6e+02 Score=24.61 Aligned_cols=42 Identities=21% Similarity=0.396 Sum_probs=26.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHH
Q 026335 132 EESKIERQHKEECEAIRKLIAV--QPPRSETQRIITDLEKEIAA 173 (240)
Q Consensus 132 ~~Ak~~R~nK~EYD~LAk~I~~--~PsR~et~~~I~~Le~Ei~~ 173 (240)
++.+.+..+|.-||+|++.|.- .---+|.-.++-..-.|+.+
T Consensus 180 dE~~mv~~yr~ki~aL~~aIe~Er~~m~EEAiqe~~dmsaeVlE 223 (508)
T PF00901_consen 180 DERKMVEEYRQKIDALKNAIEVEREGMQEEAIQEIADMSAEVLE 223 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccHHHHH
Confidence 4567778889999999998863 22344444444444444443
No 247
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=21.43 E-value=3.4e+02 Score=19.98 Aligned_cols=49 Identities=16% Similarity=0.199 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 160 TQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEE 208 (240)
Q Consensus 160 t~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~d 208 (240)
.+.++..+..|+..+-.+...+....+...+.+..+++.+.++-..+.+
T Consensus 38 l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~ 86 (90)
T PF06103_consen 38 LQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSE 86 (90)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3445566666677777777777777777777888888888888777653
No 248
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=21.38 E-value=5e+02 Score=21.86 Aligned_cols=66 Identities=18% Similarity=0.233 Sum_probs=51.3
Q ss_pred HHHHHhccchhhhhH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 026335 78 FLQELSTFEIPLLKS---KAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEE 143 (240)
Q Consensus 78 ~l~eLa~~E~s~~K~---~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~E 143 (240)
-|..|..+.-..... .+...+...+..+|++.-..++..|..-+..+..++..++.++..-.+|+.
T Consensus 38 qL~~l~~y~~ey~q~~~~k~~~G~s~~q~~nyq~fI~~Le~~I~q~~~~~~~~~~~ve~~r~~w~ek~~ 106 (148)
T COG2882 38 QLKMLSGYRNEYEQNLNEKLKSGVSAAQWQNYQQFISQLEVAIDQQQSQLSKLRKQVEQKREIWQEKQI 106 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455544444422 466667777889999999999999999999999999999999988776654
No 249
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=21.34 E-value=3.7e+02 Score=20.42 Aligned_cols=102 Identities=23% Similarity=0.301 Sum_probs=56.3
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 026335 90 LKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEK 169 (240)
Q Consensus 90 ~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~ 169 (240)
.+...+...+-..+..+......+-..+.........+-..+... -.-..+...|. .+.+.......|..
T Consensus 26 ~e~~~l~~~d~~~l~~~~~~k~~l~~~l~~le~~r~~~~~~~~~~-------~~~~~l~~~~~---~~~~l~~~~~~l~~ 95 (143)
T PF05130_consen 26 EEREALISGDIDELEELVEEKQELLEELRELEKQRQQLLAKLGAE-------PEEATLSELIE---EREELQALWRELRE 95 (143)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------SCHHHHHHHHC---CCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------cccccHHHHHh---ccHHHHHHHHHHHH
Confidence 344455555666666666666666555555554444333333222 12333344443 55666666666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 170 EIAALEAENTAGSRLLELRKKQFALLLHVVDE 201 (240)
Q Consensus 170 Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~ 201 (240)
-+.++...+......+......++.++..+..
T Consensus 96 ~~~~~~~~n~~N~~ll~~~~~~~~~~l~~l~~ 127 (143)
T PF05130_consen 96 LLEELQELNERNQQLLEQALEFVQQLLNLLQP 127 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777777777777766666666666555443
No 250
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=21.34 E-value=1.8e+02 Score=21.11 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 111 EEINRQTLQAKADIEDLKKQLEESK 135 (240)
Q Consensus 111 ~~Ie~~i~~~k~~Ie~LK~eL~~Ak 135 (240)
.+|++.|.-.+.+|+.||.+|..-+
T Consensus 28 ~El~eRIalLq~EIeRlkAe~~kK~ 52 (65)
T COG5509 28 AELEERIALLQAEIERLKAELAKKK 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4677789999999999998876433
No 251
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=21.29 E-value=4.4e+02 Score=21.25 Aligned_cols=16 Identities=13% Similarity=0.333 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 026335 162 RIITDLEKEIAALEAE 177 (240)
Q Consensus 162 ~~I~~Le~Ei~~L~~e 177 (240)
..++.|+.+|..++.-
T Consensus 96 E~veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 96 EEVEELRADVQDLKEM 111 (120)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456777777776554
No 252
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=21.15 E-value=3.5e+02 Score=28.05 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 161 QRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNT 205 (240)
Q Consensus 161 ~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~ 205 (240)
..+|..+.+.|+.+....+.++..+. +||..|=..+..|+.+
T Consensus 606 ~~~i~~l~~~i~~~e~rl~~~e~rl~---~QFtaME~~msqmnsq 647 (661)
T PRK06664 606 DERIADNNKKIEEYEKKLESKERKLK---GKYLTMDQTVKKMKEQ 647 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 34455555555555555444444443 7999888888888754
No 253
>PRK00295 hypothetical protein; Provisional
Probab=20.88 E-value=3.3e+02 Score=19.63 Aligned_cols=48 Identities=21% Similarity=0.169 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 161 QRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEE 208 (240)
Q Consensus 161 ~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~d 208 (240)
+..|..|+-.++-++...+.+...+-.-.++...|-..+..|...+.+
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888888888888888888887777777777777777666654
No 254
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=20.84 E-value=87 Score=27.00 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=28.0
Q ss_pred CChhHHHHHhhhccCCCCCCCchHHHHHHHHHH
Q 026335 24 HEDDVIIKHRLLTRTTTTRGEPPLKKLQKKFTS 56 (240)
Q Consensus 24 ~~edeiIk~RLL~dg~~~gderpLkrL~Kkf~~ 56 (240)
..+++.+++|+..++.-+++++|.++.++-|-.
T Consensus 127 v~d~e~lr~Rl~~R~~~~~~~~p~~~~~~~~~~ 159 (197)
T PRK12339 127 IRDAELHRSRLADRINYTHKNSPGKRLAEHLPE 159 (197)
T ss_pred eCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHH
Confidence 458899999999998778889999998887754
No 255
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=20.80 E-value=6.2e+02 Score=22.71 Aligned_cols=151 Identities=15% Similarity=0.121 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q 026335 69 NDCEKLAKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEE--------------- 133 (240)
Q Consensus 69 ~~~~~l~e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~--------------- 133 (240)
..+......|-..+...--......--......++......+..++..|...+.+|.-++..-+.
T Consensus 78 ~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~ 157 (312)
T PF00038_consen 78 DNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTV 157 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccce
Q ss_pred ----------HHHHHHhHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 134 ----------SKIERQHKEECEAIRKLIAV------QPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLH 197 (240)
Q Consensus 134 ----------Ak~~R~nK~EYD~LAk~I~~------~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~ 197 (240)
+...+.-|.+||.++..... .+--.+.......-...+..+..+...+...|..-+.++..|-.
T Consensus 158 e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~ 237 (312)
T PF00038_consen 158 EVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRA 237 (312)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhcccc
Q ss_pred HHHHHHHHHHHHhhchHHHHHH
Q 026335 198 VVDELQNTMEEEQKNLIEEMRM 219 (240)
Q Consensus 198 ~i~~Lq~~l~de~~~~~~e~~~ 219 (240)
....|...|.+=...-..++..
T Consensus 238 ~~~~Le~~l~~le~~~~~~~~~ 259 (312)
T PF00038_consen 238 KNASLERQLRELEQRLDEEREE 259 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHHHH
No 256
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=20.77 E-value=3.3e+02 Score=19.49 Aligned_cols=24 Identities=42% Similarity=0.357 Sum_probs=14.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Q 026335 156 PRSETQRIITDLEKEIAALEAENT 179 (240)
Q Consensus 156 sR~et~~~I~~Le~Ei~~L~~e~~ 179 (240)
|-+|....|.-|+.||+.++.+..
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666665543
No 257
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.60 E-value=8e+02 Score=24.24 Aligned_cols=75 Identities=21% Similarity=0.228 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 117 TLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLL 196 (240)
Q Consensus 117 i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll 196 (240)
+-....+--.+..+++..+.. ...+++.|.....+.+- ....|..++..|..+.+.++..+..=.+++..++
T Consensus 31 ~~~ld~~~r~~~~~~e~l~~~------rn~~sk~ig~~~~~~~~--~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~l 102 (429)
T COG0172 31 LLELDEERRKLLRELEELQAE------RNELSKEIGRALKRGED--DAEELIAEVKELKEKLKELEAALDELEAELDTLL 102 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhccch--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344444444444555444433 23566666543333222 3455555666666666666666555555555544
Q ss_pred HHH
Q 026335 197 HVV 199 (240)
Q Consensus 197 ~~i 199 (240)
-.|
T Consensus 103 l~i 105 (429)
T COG0172 103 LTI 105 (429)
T ss_pred HhC
Confidence 443
No 258
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=20.55 E-value=4.6e+02 Score=21.09 Aligned_cols=86 Identities=10% Similarity=0.122 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 114 NRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFA 193 (240)
Q Consensus 114 e~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~ 193 (240)
+..+...+.++..+-.++...+ .+|+.+-+.....-.+-....-+..|+..+.+...++..+...+-.-.-.+.
T Consensus 54 ~~~l~~~r~~l~~~~~~~~~L~------~~~~~k~~~~~~l~~~~s~~~l~~~L~~~~~e~eeeSe~lae~fl~g~~d~~ 127 (150)
T PF07200_consen 54 EPELEELRSQLQELYEELKELE------SEYQEKEQQQDELSSNYSPDALLARLQAAASEAEEESEELAEEFLDGEIDVD 127 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC-S-SSSHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3444444444444444433332 3344443333332222333345577888888888888888776665555666
Q ss_pred HHHHHHHHHHHH
Q 026335 194 LLLHVVDELQNT 205 (240)
Q Consensus 194 ~Ll~~i~~Lq~~ 205 (240)
.++......+..
T Consensus 128 ~Fl~~f~~~R~~ 139 (150)
T PF07200_consen 128 DFLKQFKEKRKL 139 (150)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
No 259
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.50 E-value=1.1e+03 Score=25.59 Aligned_cols=101 Identities=19% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHhHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 026335 100 LREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIE------------RQHKEECEAIRKLIAVQPPRSETQRIITDL 167 (240)
Q Consensus 100 ~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~------------R~nK~EYD~LAk~I~~~PsR~et~~~I~~L 167 (240)
+++++.-..+..+-+++-..-....+..|.+|+.-+++ .+||++-+.+. ..+....|
T Consensus 374 ekqLerQReiE~qrEEerkkeie~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~-----------~nak~~ql 442 (1118)
T KOG1029|consen 374 EKQLERQREIERQREEERKKEIERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVY-----------LNAKKKQL 442 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-----------HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhh
Q 026335 168 EKEIAALEAENTAGSRLLE--------------LRKKQFALLLHVVDELQNTMEEEQK 211 (240)
Q Consensus 168 e~Ei~~L~~e~~~~~~kl~--------------~RrkQF~~Ll~~i~~Lq~~l~de~~ 211 (240)
+-|+..|......++.++. .=++|-.+.+.+|.+|+.-|.+-+.
T Consensus 443 ~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~ 500 (1118)
T KOG1029|consen 443 QQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQE 500 (1118)
T ss_pred HHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
No 260
>PLN02320 seryl-tRNA synthetase
Probab=20.36 E-value=8.9e+02 Score=24.38 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=18.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 156 PRSETQRIITDLEKEIAALEAENTAGSRLLE 186 (240)
Q Consensus 156 sR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~ 186 (240)
.+.+..+....|+++|..|+.+...++.++.
T Consensus 131 ~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~ 161 (502)
T PLN02320 131 ERQALVEEGKNLKEGLVTLEEDLVKLTDELQ 161 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666777777666666655444
No 261
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=20.32 E-value=4.2e+02 Score=22.12 Aligned_cols=58 Identities=22% Similarity=0.265 Sum_probs=36.6
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026335 153 VQPPRSETQRIITDLEKEIAALEAENTAGS-----RLLELRKKQFALLLHVVDELQNTMEEEQK 211 (240)
Q Consensus 153 ~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~-----~kl~~RrkQF~~Ll~~i~~Lq~~l~de~~ 211 (240)
..|+ .....+..+|++|+.++.+|..... .+|..=+++.+.+...+..+...+.....
T Consensus 32 ~~~~-~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~ 94 (161)
T PF04420_consen 32 KLPS-SKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKS 94 (161)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred hhhc-ccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 5666677888888888888875432 24444456678888888888877765444
No 262
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=20.31 E-value=3.4e+02 Score=19.48 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 160 TQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEE 208 (240)
Q Consensus 160 t~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~d 208 (240)
.+..|..|+-.++-++...+.+...+-.-.++...|=..+..|...|.+
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888888888877777777777777777766664
No 263
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=20.30 E-value=1.2e+03 Score=25.92 Aligned_cols=92 Identities=21% Similarity=0.285 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC--------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 121 KADIEDLKKQLEESKIERQHKEECEAIRKLIAVQ--------PPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQF 192 (240)
Q Consensus 121 k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~--------PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF 192 (240)
...|..+...+..++..|..|. ..+-+.|..+ |.-+.-....+.|.-|+++++.+...+...|..-.++-
T Consensus 768 ~~~i~~lE~~~~d~~~~re~rl--kdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~ 845 (1174)
T KOG0933|consen 768 EDKISTLEKKMKDAKANRERRL--KDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQI 845 (1174)
T ss_pred HHHHHHHHHHHhHhhhhhHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666665543 2344445433 23334455567788888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHhhchH
Q 026335 193 ALLLHVVDELQNTMEEEQKNLI 214 (240)
Q Consensus 193 ~~Ll~~i~~Lq~~l~de~~~~~ 214 (240)
..|-..+..|...+.....+..
T Consensus 846 ~~l~~e~~~l~~kv~~~~~~~~ 867 (1174)
T KOG0933|consen 846 SSLKSELGNLEAKVDKVEKDVK 867 (1174)
T ss_pred HHHHHHHHHHHHHHHhHHhHHH
Confidence 8888888888877765444333
No 264
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=20.16 E-value=7.4e+02 Score=23.40 Aligned_cols=68 Identities=13% Similarity=0.218 Sum_probs=60.8
Q ss_pred HHHHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 026335 75 AKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKE 142 (240)
Q Consensus 75 ~e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~ 142 (240)
.+.+..+|.+....++........-..-+..|-.-...++..+.+.+.+.-=|+++|+.|...--+|+
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~ke 248 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKE 248 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667789999999999999998889999999999999999999999999999999999988766655
No 265
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=20.11 E-value=9.4e+02 Score=24.54 Aligned_cols=60 Identities=17% Similarity=0.169 Sum_probs=33.1
Q ss_pred HHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 79 LQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIER 138 (240)
Q Consensus 79 l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R 138 (240)
+..+..|+--....+.+..-|..|..++..+-+.-++..+..-.++...+..|..|...+
T Consensus 6 lnm~~~f~~l~r~~~~l~~g~e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~ 65 (604)
T KOG3564|consen 6 LNMRNLFEQLVRDIEILGEGNEDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKR 65 (604)
T ss_pred HHHHHhHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 344444444444555555555556666665555666666665555555555555555443
No 266
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.05 E-value=3.4e+02 Score=20.83 Aligned_cols=56 Identities=14% Similarity=0.204 Sum_probs=32.9
Q ss_pred HHHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 76 KAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQL 131 (240)
Q Consensus 76 e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL 131 (240)
=.++..|..+.|++.-..-+.......-........-+...+..+..+|..|+..+
T Consensus 47 l~~I~~lr~~G~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~ 102 (113)
T cd01109 47 LEFIKCLRNTGMSIKDIKEYAELRREGDSTIPERLELLEEHREELEEQIAELQETL 102 (113)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888899999887766654321111123334455556666666666555544
Done!