Query 026335
Match_columns 240
No_of_seqs 113 out of 150
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 11:09:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026335.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026335hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 97.0 0.078 2.7E-06 46.3 18.8 122 75-200 27-149 (256)
2 3na7_A HP0958; flagellar bioge 91.8 5.8 0.0002 34.2 20.6 126 79-207 10-142 (256)
3 3hnw_A Uncharacterized protein 91.2 2.7 9.1E-05 33.7 10.9 69 102-189 69-137 (138)
4 3oja_B Anopheles plasmodium-re 90.6 9.8 0.00034 35.8 16.1 48 160-207 528-575 (597)
5 3ghg_A Fibrinogen alpha chain; 89.3 14 0.00049 35.7 15.9 67 118-186 60-127 (562)
6 3m91_A Proteasome-associated A 83.9 4.8 0.00017 27.1 6.8 46 155-202 4-49 (51)
7 4aj5_K Spindle and kinetochore 82.4 13 0.00044 29.4 9.7 86 139-228 25-121 (123)
8 3swk_A Vimentin; cytoskeleton, 78.7 15 0.00053 26.8 8.7 74 101-174 7-82 (86)
9 1c1g_A Tropomyosin; contractIl 76.4 28 0.00096 27.9 20.9 45 162-206 139-183 (284)
10 3he5_A Synzip1; heterodimeric 68.0 22 0.00074 23.0 7.1 44 164-207 5-48 (49)
11 1ykh_B RNA polymerase II holoe 66.6 17 0.00059 28.6 6.8 38 149-186 75-116 (132)
12 2avr_X Adhesion A; antiparalle 66.1 46 0.0016 26.0 13.3 97 77-188 6-108 (119)
13 3a7p_A Autophagy protein 16; c 63.0 38 0.0013 27.6 8.3 49 158-206 64-112 (152)
14 1yke_B RNA polymerase II holoe 62.6 22 0.00075 28.7 6.9 52 149-207 75-130 (151)
15 3hnw_A Uncharacterized protein 61.4 59 0.002 25.7 11.4 46 162-207 89-134 (138)
16 4dnd_A Syntaxin-10, SYN10; str 58.5 64 0.0022 25.2 10.2 86 46-131 39-128 (130)
17 3ol1_A Vimentin; structural ge 57.1 63 0.0021 24.7 11.1 31 105-135 31-61 (119)
18 1s94_A S-syntaxin; three helix 56.9 74 0.0025 25.4 10.1 52 101-152 36-91 (180)
19 3haj_A Human pacsin2 F-BAR; pa 55.9 1.3E+02 0.0044 27.9 18.3 26 110-135 131-156 (486)
20 2lw1_A ABC transporter ATP-bin 54.2 43 0.0015 24.2 6.7 47 161-207 21-73 (89)
21 3ghg_A Fibrinogen alpha chain; 53.1 66 0.0023 31.2 9.4 67 120-186 87-155 (562)
22 3etw_A Adhesin A; antiparallel 52.2 82 0.0028 24.5 13.1 66 78-149 7-78 (119)
23 3htk_A Structural maintenance 50.4 51 0.0018 21.7 7.4 47 86-132 11-57 (60)
24 3q8t_A Beclin-1; autophagy, AT 48.8 79 0.0027 23.4 11.0 51 157-207 34-84 (96)
25 2dfs_A Myosin-5A; myosin-V, in 48.3 2.6E+02 0.0087 29.1 19.0 29 159-187 1020-1048(1080)
26 1f5n_A Interferon-induced guan 48.1 1.9E+02 0.0065 28.0 12.0 16 74-89 460-475 (592)
27 4h22_A Leucine-rich repeat fli 46.8 80 0.0028 24.0 7.3 50 169-218 44-93 (103)
28 2v0o_A FCHO2, FCH domain only 46.3 1.3E+02 0.0043 25.0 16.0 16 137-152 138-153 (276)
29 3sjb_C Golgi to ER traffic pro 45.8 92 0.0031 23.3 8.1 65 134-199 22-86 (93)
30 2l5g_A GPS2 protein, G protein 44.6 36 0.0012 21.4 4.1 24 157-180 10-33 (38)
31 3ilw_A DNA gyrase subunit A; D 42.9 2.3E+02 0.0077 27.0 13.8 74 134-207 387-461 (470)
32 2l5g_B Putative uncharacterize 42.7 36 0.0012 22.0 4.0 24 110-133 11-34 (42)
33 1zvu_A Topoisomerase IV subuni 39.9 60 0.0021 32.5 7.1 67 146-212 386-452 (716)
34 1vcs_A Vesicle transport throu 39.1 1.2E+02 0.0039 22.5 10.2 52 123-180 39-92 (102)
35 2efl_A Formin-binding protein 37.9 1.8E+02 0.0061 24.3 21.2 36 111-152 119-154 (305)
36 2qyw_A Vesicle transport throu 36.5 1.3E+02 0.0044 22.3 10.6 49 123-177 50-100 (102)
37 2xcs_B DNA gyrase subunit B, D 34.8 3.5E+02 0.012 26.9 11.7 60 148-207 623-682 (692)
38 4dzn_A Coiled-coil peptide CC- 34.7 72 0.0025 19.0 4.1 19 114-132 8-26 (33)
39 2eqb_B RAB guanine nucleotide 34.4 1.5E+02 0.005 22.3 14.3 75 114-208 18-94 (97)
40 2zvf_A Alanyl-tRNA synthetase; 33.6 99 0.0034 24.2 6.4 30 158-187 28-57 (171)
41 1bb1_B Designed, thermostable 32.6 66 0.0022 19.5 3.8 23 107-129 8-30 (36)
42 4dk0_A Putative MACA; alpha-ha 32.2 2.5E+02 0.0084 24.2 9.9 32 116-153 78-109 (369)
43 3m91_A Proteasome-associated A 32.1 1.1E+02 0.0038 20.2 5.9 29 105-133 20-48 (51)
44 3lpx_A GYRA, DNA gyrase, A sub 31.5 98 0.0034 29.7 6.8 63 145-207 422-484 (500)
45 2zdi_C Prefoldin subunit alpha 31.5 1.8E+02 0.0062 22.5 10.4 48 159-206 95-142 (151)
46 3a7p_A Autophagy protein 16; c 31.4 2.1E+02 0.0071 23.2 12.1 74 109-195 69-143 (152)
47 3i2w_A Syndapin, LD46328P; EFC 30.9 2.4E+02 0.0081 23.7 15.3 38 111-154 117-154 (290)
48 2inr_A DNA topoisomerase 4 sub 30.2 3.5E+02 0.012 25.9 10.5 61 148-208 440-500 (514)
49 3trt_A Vimentin; cytoskeleton, 29.9 1.4E+02 0.0047 20.6 10.3 16 134-149 8-23 (77)
50 2dgc_A Protein (GCN4); basic d 29.5 1.3E+02 0.0046 20.4 6.2 21 164-184 32-52 (63)
51 1hjb_A Ccaat/enhancer binding 29.1 1.5E+02 0.0053 21.6 6.2 46 155-200 29-74 (87)
52 4h22_A Leucine-rich repeat fli 29.1 1.9E+02 0.0065 22.0 7.8 46 162-207 30-75 (103)
53 2wt7_B Transcription factor MA 28.6 1.3E+02 0.0046 22.2 5.8 39 109-147 49-88 (90)
54 1cxz_B Protein (PKN); protein- 28.5 1.7E+02 0.006 21.4 9.7 49 135-183 35-84 (86)
55 3teq_A Stromal interaction mol 28.1 1.9E+02 0.0065 21.8 6.7 82 93-186 6-88 (101)
56 3t97_B Nuclear pore complex pr 28.0 1.6E+02 0.0053 20.6 6.7 39 161-199 9-47 (65)
57 2e7s_A RAB guanine nucleotide 28.0 2.3E+02 0.0077 22.5 10.1 51 157-208 62-114 (135)
58 1go4_E MAD1 (mitotic arrest de 27.4 15 0.00053 27.9 0.4 77 107-183 11-96 (100)
59 2xv5_A Lamin-A/C; structural p 27.4 1.6E+02 0.0055 20.8 5.9 27 100-126 4-30 (74)
60 3tnu_B Keratin, type II cytosk 27.3 2.1E+02 0.007 21.8 9.7 61 158-218 39-99 (129)
61 3tnu_A Keratin, type I cytoske 27.0 2.1E+02 0.0072 21.8 9.6 60 159-218 42-101 (131)
62 1fxk_C Protein (prefoldin); ar 26.9 2E+02 0.0069 21.6 13.0 47 159-205 85-131 (133)
63 2nov_A DNA topoisomerase 4 sub 26.8 74 0.0025 30.5 5.1 64 148-211 416-479 (496)
64 2aze_B Transcription factor E2 26.8 1.2E+02 0.0041 22.8 5.4 34 160-193 4-37 (106)
65 2ocy_A RAB guanine nucleotide 26.6 2.5E+02 0.0087 22.6 13.9 45 114-177 50-94 (154)
66 2aze_A Transcription factor DP 26.2 2.1E+02 0.007 23.3 7.0 40 169-208 5-44 (155)
67 1dh3_A Transcription factor CR 26.0 1.5E+02 0.005 19.6 6.3 35 132-185 11-45 (55)
68 4dzo_A Mitotic spindle assembl 25.9 1.9E+02 0.0064 22.3 6.5 40 162-201 4-43 (123)
69 1gmj_A ATPase inhibitor; coile 25.7 2E+02 0.0067 21.1 7.0 34 100-133 36-69 (84)
70 1ykh_A RNA polymerase II media 25.3 2.3E+02 0.0077 21.6 10.8 39 100-138 68-106 (108)
71 2v4h_A NF-kappa-B essential mo 25.0 2.3E+02 0.008 21.7 9.9 60 117-178 47-106 (110)
72 2lw9_A Unconventionnal myosin- 24.6 1.3E+02 0.0044 20.0 4.5 26 160-185 4-29 (51)
73 1deq_A Fibrinogen (alpha chain 24.2 4.3E+02 0.015 24.5 12.3 25 162-186 134-158 (390)
74 2kjg_A Archaeal protein SSO690 23.8 96 0.0033 23.2 4.2 22 135-156 54-75 (99)
75 1ez3_A Syntaxin-1A; three heli 23.6 2.2E+02 0.0076 20.9 11.1 19 185-203 90-108 (127)
76 2fxo_A Myosin heavy chain, car 23.5 2.5E+02 0.0085 21.4 15.9 29 110-138 36-64 (129)
77 1yzm_A FYVE-finger-containing 23.5 1.6E+02 0.0055 19.6 4.8 41 121-175 8-48 (51)
78 3iox_A AGI/II, PA; alpha helix 23.4 4.9E+02 0.017 24.9 14.6 56 77-135 6-61 (497)
79 3uun_A Dystrophin; triple heli 23.3 2E+02 0.0067 20.2 9.0 37 165-201 81-117 (119)
80 2f1m_A Acriflavine resistance 22.6 3.2E+02 0.011 22.4 8.6 14 120-133 110-123 (277)
81 3fb2_A Spectrin alpha chain, b 22.3 3E+02 0.01 21.9 14.0 150 47-203 18-186 (218)
82 3htk_A Structural maintenance 22.2 1.7E+02 0.0058 19.0 8.5 47 161-207 11-57 (60)
83 1z0k_B FYVE-finger-containing 21.9 1.1E+02 0.0039 21.6 4.1 41 121-175 26-66 (69)
84 3fpp_A Macrolide-specific effl 21.6 3.2E+02 0.011 23.3 7.9 21 115-135 76-96 (341)
85 2c5k_T Syntaxin TLG1, T-snare 21.1 1.7E+02 0.0057 21.5 5.1 52 156-207 37-92 (95)
86 1a31_A Protein (topoisomerase 20.6 79 0.0027 31.0 4.0 33 105-137 465-497 (591)
87 3vkg_A Dynein heavy chain, cyt 20.6 1.1E+03 0.038 27.9 21.5 48 160-207 2019-2066(3245)
88 1nkp_B MAX protein, MYC proto- 20.4 2.2E+02 0.0077 19.8 6.6 15 141-155 18-32 (83)
89 3ter_A Mammalian stromal inter 20.2 2.8E+02 0.0095 22.0 6.5 82 92-185 36-120 (136)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.04 E-value=0.078 Score=46.25 Aligned_cols=122 Identities=15% Similarity=0.094 Sum_probs=85.9
Q ss_pred HHHHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 026335 75 AKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQ 154 (240)
Q Consensus 75 ~e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~ 154 (240)
...+-.++..++-.+....--...-..++........+++..|..++..|...+..|..++ +-.+|++|-+.|...
T Consensus 27 ~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~----~~kE~~aL~kEie~~ 102 (256)
T 3na7_A 27 IREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK----SERELRSLNIEEDIA 102 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS----SSSHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC----CHHHHHHHHHHHHHH
Confidence 4556677888888888888888888888889999999999999999999999999997655 777999999999854
Q ss_pred C-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 155 P-PRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVD 200 (240)
Q Consensus 155 P-sR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~ 200 (240)
- -....+..|..+...++.+......+...+...+..+..+-..+.
T Consensus 103 ~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 149 (256)
T 3na7_A 103 KERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVE 149 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 233444455555555555555555555555555544444443333
No 2
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=91.84 E-value=5.8 Score=34.22 Aligned_cols=126 Identities=12% Similarity=0.056 Sum_probs=61.4
Q ss_pred HHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 026335 79 LQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQT-------LQAKADIEDLKKQLEESKIERQHKEECEAIRKLI 151 (240)
Q Consensus 79 l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i-------~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I 151 (240)
|.+|..++..+.+..-....-..++..-......+...+ ..+..+|..+..++...+.- -..|..--..+
T Consensus 10 L~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~r---i~~~~~~l~~v 86 (256)
T 3na7_A 10 LIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAK---IASIQKKMSEI 86 (256)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHcc
Confidence 444444444444444333333444444444444444444 44444444444444333222 12222222223
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 152 AVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTME 207 (240)
Q Consensus 152 ~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~ 207 (240)
..+.......+.|+.++.++..++.+...+...++.-+.....+-..+..++..+.
T Consensus 87 ~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~ 142 (256)
T 3na7_A 87 KSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLAL 142 (256)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556677777777777777777666666666555555555555555554443
No 3
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=91.24 E-value=2.7 Score=33.66 Aligned_cols=69 Identities=19% Similarity=0.245 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 102 EKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAG 181 (240)
Q Consensus 102 E~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~ 181 (240)
|.-.-......++.++....++|..||.+|..++.. |+. ..+.+++|++++..|+.+...+
T Consensus 69 El~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k------~e~-------------~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 69 DYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIK------AES-------------SAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH-------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH-------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445566677777888999999988887653 443 4456677777777777777777
Q ss_pred HHHHHHHH
Q 026335 182 SRLLELRK 189 (240)
Q Consensus 182 ~~kl~~Rr 189 (240)
+..+...+
T Consensus 130 e~~~~~~~ 137 (138)
T 3hnw_A 130 ETELNDSK 137 (138)
T ss_dssp HHHHHHC-
T ss_pred HHHHHhhc
Confidence 76666443
No 4
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.63 E-value=9.8 Score=35.77 Aligned_cols=48 Identities=21% Similarity=0.178 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 160 TQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTME 207 (240)
Q Consensus 160 t~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~ 207 (240)
...++++.+++++.++.+...++..++..+++...+-.....+...|.
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~ 575 (597)
T 3oja_B 528 RRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVK 575 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 445556666666666777777777777777777666666665555544
No 5
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=89.30 E-value=14 Score=35.74 Aligned_cols=67 Identities=12% Similarity=0.120 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 026335 118 LQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIA-ALEAENTAGSRLLE 186 (240)
Q Consensus 118 ~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~-~L~~e~~~~~~kl~ 186 (240)
..++..|++||.+|++= .+.++.-|--.-.+...+..+..+....+..-.|+. +|+....-+..+++
T Consensus 60 rDltkrINELKnqLEdl--sKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVd 127 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEY--QKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVI 127 (562)
T ss_dssp HHHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH--HhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555544 222222333233333344555555555555555555 55555555555555
No 6
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=83.92 E-value=4.8 Score=27.06 Aligned_cols=46 Identities=37% Similarity=0.424 Sum_probs=38.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 155 PPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDEL 202 (240)
Q Consensus 155 PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~L 202 (240)
|+|. ...+..|..++..|...+..+...|..-|.|...|=..|..|
T Consensus 4 ~~~~--~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 4 PTRS--ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp ---C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666 677889999999999999999999999999998888877766
No 7
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=82.36 E-value=13 Score=29.37 Aligned_cols=86 Identities=17% Similarity=0.126 Sum_probs=53.6
Q ss_pred HhHHHHHHHHHHHhcCCChH------HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 026335 139 QHKEECEAIRKLIAVQPPRS------ETQRIITDLEKEIAALEAENTAGSRLL----ELRKKQFALLLHVVDELQNTMEE 208 (240)
Q Consensus 139 ~nK~EYD~LAk~I~~~PsR~------et~~~I~~Le~Ei~~L~~e~~~~~~kl----~~RrkQF~~Ll~~i~~Lq~~l~d 208 (240)
++|-+|| .++.||+-. ...++|.+++.+...|...-..+...- +.=|.-+...+..|+.||...+=
T Consensus 25 q~RLe~E----f~~~~Pd~A~e~NPv~Ll~~LsaIk~ry~~L~~q~~~iaaeQke~~d~ir~tL~~tm~miQ~LQ~~td~ 100 (123)
T 4aj5_K 25 QYRLEYE----IKTNHPDSASEKNPVTLLKELSVIKSRYQTLYARFKPVAVEQKESKSRICATVKKTMNMIQKLQKQTDL 100 (123)
T ss_dssp HHHHHHH----HHHCC-----CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHH----HHHhCCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5788888 467788665 678888888888888887776555444 22344666678889999999886
Q ss_pred HhhchHHHHHHH-HHhcCCcC
Q 026335 209 EQKNLIEEMRMA-EEQKGGME 228 (240)
Q Consensus 209 e~~~~~~e~~~~-~~~~~~~~ 228 (240)
+-.+..++=..+ +.+++-|.
T Consensus 101 el~plteeE~~a~~~l~~~~~ 121 (123)
T 4aj5_K 101 ELSPLTKEEKTAAEQFKFHMP 121 (123)
T ss_dssp CCCCCHHHHHHHHHC------
T ss_pred CCCCCChhHHHHHHHHHhhCC
Confidence 666666665544 43455554
No 8
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=78.69 E-value=15 Score=26.80 Aligned_cols=74 Identities=23% Similarity=0.369 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHH
Q 026335 101 REKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKE-ECEAIRKLIAV-QPPRSETQRIITDLEKEIAAL 174 (240)
Q Consensus 101 rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~-EYD~LAk~I~~-~PsR~et~~~I~~Le~Ei~~L 174 (240)
+++..-...+.+++.++..++..++.+|..++..-..|..=+ ++-.|.|.+-. +-.|.+.+.+|+.|..||.=|
T Consensus 7 ~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 7 RQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677788888888888888888888887766665322 22222222221 233445555555555555433
No 9
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=76.37 E-value=28 Score=27.89 Aligned_cols=45 Identities=7% Similarity=0.077 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 162 RIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTM 206 (240)
Q Consensus 162 ~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l 206 (240)
..+..+...+..+......+...+...+..+..+...+..+...+
T Consensus 139 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 183 (284)
T 1c1g_A 139 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERA 183 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444433
No 10
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=67.96 E-value=22 Score=23.01 Aligned_cols=44 Identities=30% Similarity=0.390 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 164 ITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTME 207 (240)
Q Consensus 164 I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~ 207 (240)
...|+.|.+.|+.+++.+..+--..+.-.+-|-..|..|+..|+
T Consensus 5 vaqlenevaslenenetlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999888777777777788888888887775
No 11
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=66.55 E-value=17 Score=28.58 Aligned_cols=38 Identities=32% Similarity=0.389 Sum_probs=26.6
Q ss_pred HHHhcCC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 149 KLIAVQP----PRSETQRIITDLEKEIAALEAENTAGSRLLE 186 (240)
Q Consensus 149 k~I~~~P----sR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~ 186 (240)
.+|.++| |-+++.+.|.+|+.|+.+...+....-..-+
T Consensus 75 ~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e 116 (132)
T 1ykh_B 75 KLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKE 116 (132)
T ss_dssp HHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688898 5668888888888888777766544444333
No 12
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=66.05 E-value=46 Score=26.04 Aligned_cols=97 Identities=18% Similarity=0.253 Sum_probs=64.8
Q ss_pred HHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 026335 77 AFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEIN------RQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKL 150 (240)
Q Consensus 77 ~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie------~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~ 150 (240)
++...|.++|.....+.. .|-++|.+++..-+ .+-...+..|++.=..|......+=+|.+|..|++.
T Consensus 6 ~V~s~l~~LEaeyq~L~~------kE~qrynqeka~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~~~~~yK~eY~~L~Kk 79 (119)
T 2avr_X 6 SLVGELQALDAEYQNLAN------QEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASK 79 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 345566666666554332 34455766665443 344555777888888999999999999999999986
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 151 IAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELR 188 (240)
Q Consensus 151 I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~R 188 (240)
.. .-+.+|+++|+..+........--..|
T Consensus 80 Yk---------~~~~~Ld~eI~~qe~iI~nFe~Iq~~~ 108 (119)
T 2avr_X 80 YE---------DALKKLEAEMEQQKAVISDFEKIQALR 108 (119)
T ss_dssp HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 456777888887776665555443333
No 13
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=63.02 E-value=38 Score=27.59 Aligned_cols=49 Identities=16% Similarity=0.076 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 158 SETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTM 206 (240)
Q Consensus 158 ~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l 206 (240)
......|..|+.++..|..+...++..|..+.+....|-+.+.-|+-.+
T Consensus 64 ~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~ 112 (152)
T 3a7p_A 64 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIEN 112 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556789999999999999999999999999999999999999888554
No 14
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=62.62 E-value=22 Score=28.72 Aligned_cols=52 Identities=31% Similarity=0.353 Sum_probs=32.6
Q ss_pred HHHhcCC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 149 KLIAVQP----PRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTME 207 (240)
Q Consensus 149 k~I~~~P----sR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~ 207 (240)
.+|..+| |-+++.+.|.+|+.|+.+...+....-.. -..++..|+++-+.|.
T Consensus 75 ~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~e-------ae~ll~~v~~~l~~ia 130 (151)
T 1yke_B 75 KLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKK-------KEKLLRHVDSLIEDFV 130 (151)
T ss_dssp HHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTTC
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 4688998 45688888888888877776664443333 3344555555554444
No 15
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=61.37 E-value=59 Score=25.70 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 162 RIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTME 207 (240)
Q Consensus 162 ~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~ 207 (240)
+.|..|+.++..+..+.+.....+..-++.+..|-..+..|+..+.
T Consensus 89 kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 89 KEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666656666666666666655544
No 16
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=58.52 E-value=64 Score=25.21 Aligned_cols=86 Identities=8% Similarity=0.125 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHhhhhcCCC-CCChhHHHHHHHHHHHHHhccchhhhhHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHH
Q 026335 46 PLKKLQKKFTSFVLEIEKD-EDNNNDCEKLAKAFLQELSTFEIPLLKSKAVIDANLREKENF---NELKEEINRQTLQAK 121 (240)
Q Consensus 46 pLkrL~Kkf~~~~~~~~~~-~d~~~~~~~l~e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y---~~~~~~Ie~~i~~~k 121 (240)
.++++-..|..|......+ ..+..+...+..++...|...+..+.=+.-...+-.+.-..| ..+-.+-..-|..++
T Consensus 39 sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r 118 (130)
T 4dnd_A 39 AVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMR 118 (130)
T ss_dssp HHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHH
Confidence 4677777777787554221 112233334444555555555555443332222222223344 334444555566666
Q ss_pred HHHHHHHHHH
Q 026335 122 ADIEDLKKQL 131 (240)
Q Consensus 122 ~~Ie~LK~eL 131 (240)
.+|..+|.+|
T Consensus 119 ~~I~~mk~~l 128 (130)
T 4dnd_A 119 EAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666655
No 17
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=57.12 E-value=63 Score=24.70 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 105 NFNELKEEINRQTLQAKADIEDLKKQLEESK 135 (240)
Q Consensus 105 ~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak 135 (240)
.-...+.+++.++..++...+++|..++..-
T Consensus 31 ~~~~e~a~l~leldn~~~~~edfk~KyE~E~ 61 (119)
T 3ol1_A 31 QLTNDKARVEVERDNLAEDIMRLREKLQEEM 61 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3334455566666666666666666655543
No 18
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=56.94 E-value=74 Score=25.44 Aligned_cols=52 Identities=27% Similarity=0.290 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHh
Q 026335 101 REKENFNELKEEINRQTLQAKADIEDLKKQLEE----SKIERQHKEECEAIRKLIA 152 (240)
Q Consensus 101 rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~----Ak~~R~nK~EYD~LAk~I~ 152 (240)
.-+..|-.....|...|......+..++..-.. +......|.+-+.|...|+
T Consensus 36 ~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~ 91 (180)
T 1s94_A 36 GFMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIK 91 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 334556666666666666666666666554222 2233344445555554444
No 19
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=55.91 E-value=1.3e+02 Score=27.93 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 110 KEEINRQTLQAKADIEDLKKQLEESK 135 (240)
Q Consensus 110 ~~~Ie~~i~~~k~~Ie~LK~eL~~Ak 135 (240)
+..++..+..+.+.+..+-.+|..||
T Consensus 131 rK~~~~~~~k~qk~l~~~~~~l~KaK 156 (486)
T 3haj_A 131 TKEAEDGFRKAQKPWAKKLKEVEAAK 156 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666665555555555544
No 20
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=54.17 E-value=43 Score=24.18 Aligned_cols=47 Identities=21% Similarity=0.181 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q 026335 161 QRIITDLEKEIAALEAENTAGSRLLEL------RKKQFALLLHVVDELQNTME 207 (240)
Q Consensus 161 ~~~I~~Le~Ei~~L~~e~~~~~~kl~~------RrkQF~~Ll~~i~~Lq~~l~ 207 (240)
++.++.|...|+.|+.+...+...+.. --..+..|+..+..++..|+
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe 73 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELE 73 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888753 12345666666666666665
No 21
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=53.13 E-value=66 Score=31.19 Aligned_cols=67 Identities=15% Similarity=0.100 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 120 AKADIEDLKKQLEESKIERQHKEECE-AIRKLIAVQ-PPRSETQRIITDLEKEIAALEAENTAGSRLLE 186 (240)
Q Consensus 120 ~k~~Ie~LK~eL~~Ak~~R~nK~EYD-~LAk~I~~~-PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~ 186 (240)
++..++.|+..+..+........||= .|.+.|.-. -.-..+..+|..|+.-|+++..+...++.-++
T Consensus 87 ~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 87 TTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666664444444443 333333322 12223334455555555555555444444444
No 22
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=52.18 E-value=82 Score=24.53 Aligned_cols=66 Identities=17% Similarity=0.245 Sum_probs=36.7
Q ss_pred HHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 026335 78 FLQELSTFEIPLLKSKAVIDANLREKENFNELKE------EINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRK 149 (240)
Q Consensus 78 ~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~------~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk 149 (240)
+...|.+++-.+.++.. .|-++|..++. +...+-...+.+|.+--..+...+..+-++.+|..|++
T Consensus 7 i~~~l~~Leae~q~L~~------~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k 78 (119)
T 3etw_A 7 LVGELQALDAEYQNLAN------QEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELAS 78 (119)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 44555555555554432 34445555543 33334455555555555556666666777778877664
No 23
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=50.41 E-value=51 Score=21.70 Aligned_cols=47 Identities=17% Similarity=0.032 Sum_probs=29.3
Q ss_pred chhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 86 EIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLE 132 (240)
Q Consensus 86 E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~ 132 (240)
+..+....-.+.-...+++.+..-..+....+..++.+|..++.++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 11 ENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344445566666677777777778888888888776653
No 24
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=48.84 E-value=79 Score=23.37 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 157 RSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTME 207 (240)
Q Consensus 157 R~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~ 207 (240)
+......|..++.+...|..+-..|......-+.|...+......|...++
T Consensus 34 ~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~ 84 (96)
T 3q8t_A 34 RKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMR 84 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556888889999999888888877777666666666666666665554
No 25
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=48.35 E-value=2.6e+02 Score=29.13 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 159 ETQRIITDLEKEIAALEAENTAGSRLLEL 187 (240)
Q Consensus 159 et~~~I~~Le~Ei~~L~~e~~~~~~kl~~ 187 (240)
+.+..+..|+++...|+.+...++..+..
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~~~~~~ 1048 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELNRRIHD 1048 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555544333
No 26
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=48.12 E-value=1.9e+02 Score=28.00 Aligned_cols=16 Identities=6% Similarity=0.312 Sum_probs=8.9
Q ss_pred HHHHHHHHHhccchhh
Q 026335 74 LAKAFLQELSTFEIPL 89 (240)
Q Consensus 74 l~e~~l~eLa~~E~s~ 89 (240)
.++.|+......+-+|
T Consensus 460 vl~~fl~~~~~~~~~i 475 (592)
T 1f5n_A 460 ILQTYLKSKESMTDAI 475 (592)
T ss_dssp HHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3556666555555554
No 27
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=46.76 E-value=80 Score=24.04 Aligned_cols=50 Identities=12% Similarity=0.248 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Q 026335 169 KEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEEQKNLIEEMR 218 (240)
Q Consensus 169 ~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~de~~~~~~e~~ 218 (240)
..++++..+.....+.++.=+..+..|-..+..|+..|++-+.-+.+-+.
T Consensus 44 E~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~LI~E~~~ 93 (103)
T 4h22_A 44 EQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEMLEPKLA 93 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444445555555555666666655555444443
No 28
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=46.27 E-value=1.3e+02 Score=25.01 Aligned_cols=16 Identities=19% Similarity=-0.002 Sum_probs=10.0
Q ss_pred HHHhHHHHHHHHHHHh
Q 026335 137 ERQHKEECEAIRKLIA 152 (240)
Q Consensus 137 ~R~nK~EYD~LAk~I~ 152 (240)
+.+-|..|+..++.+.
T Consensus 138 l~Kak~~Y~~~c~e~e 153 (276)
T 2v0o_A 138 LQKSKENYNAKCVEQE 153 (276)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455667777766664
No 29
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=45.82 E-value=92 Score=23.29 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=38.0
Q ss_pred HHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 134 SKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVV 199 (240)
Q Consensus 134 Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i 199 (240)
++..++-+.|+-.|....+.-.+-++- ++-.+|...+.-|.++.+.+...+..-+..|...+.-+
T Consensus 22 a~~~~~lk~E~~~lk~E~~stSaQDeF-AKWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~~~~~~~ 86 (93)
T 3sjb_C 22 SKKYLAKVKERHELKEFNNSISAQDNY-AKWTKNNRKLDSLDKEINNLKDEIQSENKAFQAHLHKL 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTTTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666666655555444443 35566666666666666666777777777777766544
No 30
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=44.56 E-value=36 Score=21.41 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 157 RSETQRIITDLEKEIAALEAENTA 180 (240)
Q Consensus 157 R~et~~~I~~Le~Ei~~L~~e~~~ 180 (240)
-.+|..+|.+|+..+..|+.++-.
T Consensus 10 LeEtkeQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 10 LEETKEQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777778888888887777644
No 31
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=42.90 E-value=2.3e+02 Score=26.95 Aligned_cols=74 Identities=14% Similarity=0.070 Sum_probs=60.2
Q ss_pred HHHHHHhHHHH-HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 134 SKIERQHKEEC-EAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTME 207 (240)
Q Consensus 134 Ak~~R~nK~EY-D~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~ 207 (240)
|+.....+-.+ +.=|+.|...|=|.=|.-.+.+|++|+++|.++.+.+...|....++...+...+.++...--
T Consensus 387 a~~~L~~~f~lse~Qa~aIl~mrL~rLt~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~yg 461 (470)
T 3ilw_A 387 ARAGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHG 461 (470)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Confidence 33333333333 456788889999998999999999999999999999999999999999999999888876553
No 32
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=42.66 E-value=36 Score=21.97 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 110 KEEINRQTLQAKADIEDLKKQLEE 133 (240)
Q Consensus 110 ~~~Ie~~i~~~k~~Ie~LK~eL~~ 133 (240)
-.+++.+|+.+...|..|+..|.+
T Consensus 11 I~kVdrEI~Kte~kI~~lqkKlke 34 (42)
T 2l5g_B 11 MDRVDREITMVEQQISKLKKKQQQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999998877654
No 33
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=39.85 E-value=60 Score=32.53 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=58.5
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026335 146 AIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEEQKN 212 (240)
Q Consensus 146 ~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~de~~~ 212 (240)
.=|+.|...|=|.=|.-.+.+|++|.++|.++.+.|..-|....++...+...+.++....-++-.+
T Consensus 386 ~QA~aIL~mrL~rLt~le~~kl~~E~~eL~~~i~~l~~iL~~~~~l~~~i~~EL~~i~~kygd~RRT 452 (716)
T 1zvu_A 386 TQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRS 452 (716)
T ss_dssp THHHHHHTCCGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 3477788888888888899999999999999999999999999999999999999998877655443
No 34
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=39.08 E-value=1.2e+02 Score=22.49 Aligned_cols=52 Identities=23% Similarity=0.365 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 123 DIEDLKKQLEESKIERQHKEECEAIRKLIAVQPP--RSETQRIITDLEKEIAALEAENTA 180 (240)
Q Consensus 123 ~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~Ps--R~et~~~I~~Le~Ei~~L~~e~~~ 180 (240)
-|.+....|++|..... .|+++ +...|| |.....+|..-+.+|..|+.+...
T Consensus 39 ~i~~ie~~l~EA~ell~-qMelE-----~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~ 92 (102)
T 1vcs_A 39 MVANVEKQLEEARELLE-QMDLE-----VREIPPQSRGMYSNRMRSYKQEMGKLETDFKR 92 (102)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHH-----HTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHH-----HHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555433 34444 345564 788888888888888888776544
No 35
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=37.90 E-value=1.8e+02 Score=24.34 Aligned_cols=36 Identities=25% Similarity=0.111 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 026335 111 EEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIA 152 (240)
Q Consensus 111 ~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~ 152 (240)
..+......+.+++......| .+-|..|+..++...
T Consensus 119 K~~~~~~~k~~k~~~~~~~~l------~KaK~~Y~~~~~e~e 154 (305)
T 2efl_A 119 KSNFHDGRKAQQHIETCWKQL------ESSKRRFERDCKEAD 154 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 334444444444444433333 344556666665554
No 36
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=36.47 E-value=1.3e+02 Score=22.26 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHHHHHH
Q 026335 123 DIEDLKKQLEESKIERQHKEECEAIRKLIAVQPP--RSETQRIITDLEKEIAALEAE 177 (240)
Q Consensus 123 ~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~Ps--R~et~~~I~~Le~Ei~~L~~e 177 (240)
-|.+....|++|..... .++++ +...|+ |.....+|..-+.+|..|+.+
T Consensus 50 ~i~~ie~~ldEA~eLl~-qMelE-----~r~~p~s~R~~~~~klr~Yk~dL~~lk~e 100 (102)
T 2qyw_A 50 LVRDFDEKQQEANETLA-EMEEE-----LRYAPLTFRNPMMSKLRNYRKDLAKLHRE 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHH-----HHTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHH-----HHhCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444454444332 33443 345564 677777888888887777654
No 37
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=34.80 E-value=3.5e+02 Score=26.91 Aligned_cols=60 Identities=15% Similarity=0.060 Sum_probs=52.6
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 148 RKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTME 207 (240)
Q Consensus 148 Ak~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~ 207 (240)
|..|..-|=|.=|.-.+.+|++|+++|.++.+.+...|....++...+...+.++...--
T Consensus 623 a~aIL~m~L~rLt~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~yg 682 (692)
T 2xcs_B 623 AQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFG 682 (692)
T ss_dssp HHHHHTCBGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcC
Confidence 667888888888888899999999999999999999999999999999888888876543
No 38
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=34.73 E-value=72 Score=18.98 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026335 114 NRQTLQAKADIEDLKKQLE 132 (240)
Q Consensus 114 e~~i~~~k~~Ie~LK~eL~ 132 (240)
.++|...+++|..||-+..
T Consensus 8 kqeiaalkkeiaalkfeia 26 (33)
T 4dzn_A 8 KQEIAALKKEIAALKFEIA 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455566666666665543
No 39
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.42 E-value=1.5e+02 Score=22.32 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 026335 114 NRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAEN--TAGSRLLELRKKQ 191 (240)
Q Consensus 114 e~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~--~~~~~kl~~RrkQ 191 (240)
+.+-..+..++..|+..|...+.. |.+.+....+++.|+++|.+.. +.-.-.-..| +.
T Consensus 18 e~~~~~~~~e~~~L~~~l~eE~~~-------------------R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar-~e 77 (97)
T 2eqb_B 18 KRELSDRDDEVKRLREDIAKENEL-------------------RTKAEEEADKLNKEVEDLTASLFDEANNMVADAR-KE 77 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 334444555555555555555544 4456677788888888887654 1111222223 33
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026335 192 FALLLHVVDELQNTMEE 208 (240)
Q Consensus 192 F~~Ll~~i~~Lq~~l~d 208 (240)
-+.+=.-...|+.+|.|
T Consensus 78 ~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 78 KYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 45555556667777664
No 40
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=33.62 E-value=99 Score=24.18 Aligned_cols=30 Identities=7% Similarity=0.009 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 158 SETQRIITDLEKEIAALEAENTAGSRLLEL 187 (240)
Q Consensus 158 ~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~ 187 (240)
.+....+++|.+++.+++.+...+..++..
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488889999999999999888888777653
No 41
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=32.64 E-value=66 Score=19.50 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026335 107 NELKEEINRQTLQAKADIEDLKK 129 (240)
Q Consensus 107 ~~~~~~Ie~~i~~~k~~Ie~LK~ 129 (240)
..++..|+.+|+..+++|...|-
T Consensus 8 keeqaaieeeiqaikeeiaaiky 30 (36)
T 1bb1_B 8 KEEQAAIEEEIQAIKEEIAAIKY 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788899999998887764
No 42
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=32.17 E-value=2.5e+02 Score=24.24 Aligned_cols=32 Identities=13% Similarity=0.119 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Q 026335 116 QTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAV 153 (240)
Q Consensus 116 ~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~ 153 (240)
++..++.++...+.+|..| +.+|+.+.++...
T Consensus 78 ~l~~~~a~l~~a~~~~~~a------~~~~~r~~~L~~~ 109 (369)
T 4dk0_A 78 ALASYQAQLVARKTAYDVA------LSNYQRLSKLYGQ 109 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHT------TTTHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHc
Confidence 3344444444444444444 3345555444443
No 43
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=32.08 E-value=1.1e+02 Score=20.24 Aligned_cols=29 Identities=7% Similarity=0.254 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 105 NFNELKEEINRQTLQAKADIEDLKKQLEE 133 (240)
Q Consensus 105 ~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~ 133 (240)
.-..-..++......++.+|..|+.+|+.
T Consensus 20 ~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 20 SLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556667777777777777777753
No 44
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=31.52 E-value=98 Score=29.70 Aligned_cols=63 Identities=10% Similarity=-0.014 Sum_probs=54.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 145 EAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTME 207 (240)
Q Consensus 145 D~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~ 207 (240)
+.=|+.|-..+=|.=|.-...++.+|.++|.++...|..-|..+.++..+|-..+.+++..--
T Consensus 422 e~Qa~aIl~mrL~rLt~le~~ki~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~~g 484 (500)
T 3lpx_A 422 AEQAKAIVDLQLYKLSGMEHDKILSEYKALLDLIAELMHILATPARLMEVICEELVAIRDEFG 484 (500)
T ss_dssp HHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Confidence 344778888888888888899999999999999999999999999999999988888876544
No 45
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=31.45 E-value=1.8e+02 Score=22.53 Aligned_cols=48 Identities=17% Similarity=0.163 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 159 ETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTM 206 (240)
Q Consensus 159 et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l 206 (240)
.....++-|++-+..|......+...+..-+.++..+...+..++..+
T Consensus 95 ~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~ 142 (151)
T 2zdi_C 95 SIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQ 142 (151)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999999999999999998654
No 46
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=31.43 E-value=2.1e+02 Score=23.17 Aligned_cols=74 Identities=9% Similarity=0.034 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 109 LKEEINRQTLQAKADIEDLKKQLEES-KIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLEL 187 (240)
Q Consensus 109 ~~~~Ie~~i~~~k~~Ie~LK~eL~~A-k~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~ 187 (240)
.-..+..++...+..|.+++.+|..= +.+-.-+-||.+ .+.++.-++..+..|++|+..+-..|..
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~a-------------Lqlq~n~lE~kl~kLq~EN~~LV~RWM~ 135 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALIS-------------GTIENNVLQQKLSDLKKEHSQLVARWLK 135 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666555432 222233334443 3456778888899999999999999998
Q ss_pred HHHHHHHH
Q 026335 188 RKKQFALL 195 (240)
Q Consensus 188 RrkQF~~L 195 (240)
|+.+=+--
T Consensus 136 rk~qEAe~ 143 (152)
T 3a7p_A 136 KTEKETEA 143 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88765543
No 47
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=30.92 E-value=2.4e+02 Score=23.70 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 026335 111 EEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQ 154 (240)
Q Consensus 111 ~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~ 154 (240)
..++..+..+.+.....-.+|. +-|..|+..++.....
T Consensus 117 K~~~~~~~k~~k~~~~~~~~l~------kaKk~Y~~~c~e~~~a 154 (290)
T 3i2w_A 117 KDLEDLFKKAQKPWAKLLAKVE------KAKADYHSACKTERSA 154 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 4455555555555555555444 4467899888876544
No 48
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=30.18 E-value=3.5e+02 Score=25.90 Aligned_cols=61 Identities=18% Similarity=0.171 Sum_probs=52.5
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 148 RKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEE 208 (240)
Q Consensus 148 Ak~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~d 208 (240)
|..|..-|=|.=|...+.+|.+|+++|.++...+...|....++...+...+.++....-+
T Consensus 440 a~~IL~m~L~rLT~~e~~kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~i~~~yg~ 500 (514)
T 2inr_A 440 AEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKS 500 (514)
T ss_dssp HHHHHTCCGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC
Confidence 5557777888888888999999999999999999999999999999999888888776543
No 49
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=29.88 E-value=1.4e+02 Score=20.57 Aligned_cols=16 Identities=13% Similarity=0.300 Sum_probs=10.0
Q ss_pred HHHHHHhHHHHHHHHH
Q 026335 134 SKIERQHKEECEAIRK 149 (240)
Q Consensus 134 Ak~~R~nK~EYD~LAk 149 (240)
++.+..-|.+||.+|.
T Consensus 8 ~~il~eiRaQYE~ia~ 23 (77)
T 3trt_A 8 TAAMRDVRQQYESVAA 23 (77)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455566667777765
No 50
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=29.54 E-value=1.3e+02 Score=20.38 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026335 164 ITDLEKEIAALEAENTAGSRL 184 (240)
Q Consensus 164 I~~Le~Ei~~L~~e~~~~~~k 184 (240)
+..|+.+++.|..++..+...
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~e 52 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666655554443
No 51
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=29.13 E-value=1.5e+02 Score=21.57 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=26.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 155 PPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVD 200 (240)
Q Consensus 155 PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~ 200 (240)
.||+-.-.....++.....|+.++..+...+..=++++..|-..+.
T Consensus 29 rSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 29 KSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666666666666666666666655555544444433
No 52
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=29.06 E-value=1.9e+02 Score=21.96 Aligned_cols=46 Identities=22% Similarity=0.227 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 162 RIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTME 207 (240)
Q Consensus 162 ~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~ 207 (240)
=+++.|+..|+++++....+.+.+....+.|..+=+.+..|+..+.
T Consensus 30 YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~ 75 (103)
T 4h22_A 30 YQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFA 75 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888999999999888888888888888888888888888776
No 53
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=28.56 E-value=1.3e+02 Score=22.15 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHH
Q 026335 109 LKEEINRQTLQAKADIEDLKKQLEESKIER-QHKEECEAI 147 (240)
Q Consensus 109 ~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R-~nK~EYD~L 147 (240)
....++.+......+++.|+.++...+..+ ..|..|++|
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666777777777888887777665544 456666654
No 54
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=28.55 E-value=1.7e+02 Score=21.38 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=41.4
Q ss_pred HHHHHhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 135 KIERQHKEECEAIRKLIAV-QPPRSETQRIITDLEKEIAALEAENTAGSR 183 (240)
Q Consensus 135 k~~R~nK~EYD~LAk~I~~-~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~ 183 (240)
+...+-|.-|+.|-++-+. ...|......+......|+.|+.+...+..
T Consensus 35 ~KElKiKeGaENL~katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~eL~a 84 (86)
T 1cxz_B 35 RKELKLKEGAENLRRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQELHA 84 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567788999999999999 889999888888888888888888777653
No 55
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=28.07 E-value=1.9e+02 Score=21.83 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=49.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHH
Q 026335 93 KAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQ-PPRSETQRIITDLEKEI 171 (240)
Q Consensus 93 ~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~-PsR~et~~~I~~Le~Ei 171 (240)
.++..+.+-|+.+|..-+..-+.+...+++.++.++. +-+-.+...-.-+ -+-++....|-.++.-|
T Consensus 6 ~wLq~T~e~E~q~~~~kk~~aekql~~A~e~~eKl~K------------KrsS~~gs~~~ahs~slD~vD~~Il~Ak~aL 73 (101)
T 3teq_A 6 KWLQLTHEVEVQYYNIKKQNAEKQLMVAKEGAEKIKK------------KRNTLFGTFHVAHSSSLDDVDHKILTAKQAL 73 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHCHHHHHTCGGGGGTTCHHHHHHHHH
T ss_pred HHHhHhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHH------------hhhchheeeehhcCCCHHHHHHHHHHHHHHH
Confidence 4677788999999999888888888888876655543 2223333222223 23445555666666666
Q ss_pred HHHHHHHHHHHHHHH
Q 026335 172 AALEAENTAGSRLLE 186 (240)
Q Consensus 172 ~~L~~e~~~~~~kl~ 186 (240)
.++..+...--..|.
T Consensus 74 ~evt~~l~Er~~RW~ 88 (101)
T 3teq_A 74 SEATAALRERLHRWQ 88 (101)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666555544444443
No 56
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=28.01 E-value=1.6e+02 Score=20.62 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 161 QRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVV 199 (240)
Q Consensus 161 ~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i 199 (240)
+..+..+.++|.+|.........++...|.-|.-|-|-+
T Consensus 9 ~~~Ld~i~~el~eLq~~~~~~~aki~e~krkl~eLsHRi 47 (65)
T 3t97_B 9 QTRLDIISEDISELQKNQTTTMAKIAQYKRKLMDLSHRT 47 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 456788889999999999999899988776666665543
No 57
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=28.00 E-value=2.3e+02 Score=22.49 Aligned_cols=51 Identities=20% Similarity=0.226 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 157 RSETQRIITDLEKEIAALEAENT--AGSRLLELRKKQFALLLHVVDELQNTMEE 208 (240)
Q Consensus 157 R~et~~~I~~Le~Ei~~L~~e~~--~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~d 208 (240)
|.+.+....+++.|+++|.+..= .-.-.-..|+. -+.+=.-...|+..+.|
T Consensus 62 R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~-~~~~e~r~~~L~~ql~e 114 (135)
T 2e7s_A 62 RTKAEEEADKLNKEVEDLTASLFDEANNLVADARME-KYAIEILNKRLTEQLRE 114 (135)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHH-HHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 55667777888888888876541 11111222333 34444445555555553
No 58
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=27.44 E-value=15 Score=27.89 Aligned_cols=77 Identities=13% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHh---cCC---ChHHHHHHHHHHHHHHHHHHHH
Q 026335 107 NELKEEINRQTLQAKADIEDLKKQLEESKIERQH---KEECEAIRKLIA---VQP---PRSETQRIITDLEKEIAALEAE 177 (240)
Q Consensus 107 ~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~n---K~EYD~LAk~I~---~~P---sR~et~~~I~~Le~Ei~~L~~e 177 (240)
......+...|.....+...|+.+...-.....+ +-.||...-.|- .+| .+......+++|+.||+.|+..
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~ 90 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGL 90 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 026335 178 NTAGSR 183 (240)
Q Consensus 178 ~~~~~~ 183 (240)
...++.
T Consensus 91 v~~lEe 96 (100)
T 1go4_E 91 LRAMER 96 (100)
T ss_dssp HTTCC-
T ss_pred HHHHhc
No 59
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=27.40 E-value=1.6e+02 Score=20.78 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 100 LREKENFNELKEEINRQTLQAKADIED 126 (240)
Q Consensus 100 ~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~ 126 (240)
.+|++.|+..-..++.++..++.+|+.
T Consensus 4 ~~e~~~~~~~i~~lE~eL~~~r~e~~~ 30 (74)
T 2xv5_A 4 ARERDTSRRLLAEKEREMAEMRARMQQ 30 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666555543
No 60
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=27.26 E-value=2.1e+02 Score=21.80 Aligned_cols=61 Identities=20% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Q 026335 158 SETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEEQKNLIEEMR 218 (240)
Q Consensus 158 ~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~de~~~~~~e~~ 218 (240)
.+....|..|+.+|..++..+..++..+..=...|..=+..++..-..++.+-.....++.
T Consensus 39 ~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~ 99 (129)
T 3tnu_B 39 SEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMA 99 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
No 61
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=26.96 E-value=2.1e+02 Score=21.83 Aligned_cols=60 Identities=25% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Q 026335 159 ETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEEQKNLIEEMR 218 (240)
Q Consensus 159 et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~de~~~~~~e~~ 218 (240)
+....|..|+.+|..++..+..++..+..=...|..=+..++..-..++.+-.....++.
T Consensus 42 elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~ 101 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEME 101 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 62
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=26.87 E-value=2e+02 Score=21.58 Aligned_cols=47 Identities=13% Similarity=0.086 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 159 ETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNT 205 (240)
Q Consensus 159 et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~ 205 (240)
.....++-|++-+..|......+...+..-+.++..+...+.++...
T Consensus 85 ~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 85 NFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34667888999999999999999999999999999999999988754
No 63
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=26.80 E-value=74 Score=30.48 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=54.1
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026335 148 RKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEEQK 211 (240)
Q Consensus 148 Ak~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~de~~ 211 (240)
|..|...|=|.=|.-.+.+|.+|+.+|.++.+.+...|....++...+...+.++...--++-.
T Consensus 416 a~~IL~m~L~rLt~~e~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~y~~~Rr 479 (496)
T 2nov_A 416 AEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRL 479 (496)
T ss_dssp HHHHHTCBGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHhChHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 5557777878878888999999999999999999999999888999999998888876655433
No 64
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=26.78 E-value=1.2e+02 Score=22.84 Aligned_cols=34 Identities=12% Similarity=0.235 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 160 TQRIITDLEKEIAALEAENTAGSRLLELRKKQFA 193 (240)
Q Consensus 160 t~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~ 193 (240)
...++..|+.||..|..+-..++..+..-+.++.
T Consensus 4 ~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~ 37 (106)
T 2aze_B 4 MGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLR 37 (106)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999988887776664444433
No 65
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=26.58 E-value=2.5e+02 Score=22.61 Aligned_cols=45 Identities=18% Similarity=0.342 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 026335 114 NRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAE 177 (240)
Q Consensus 114 e~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e 177 (240)
..+...+..++..|...|...+..|. +.+....+++.|+++|.+.
T Consensus 50 ~~~~~~~~~e~~~L~~~l~~E~~~R~-------------------~aE~~~~~ie~ElEeLTas 94 (154)
T 2ocy_A 50 KRELSDRDDEVKRLREDIAKENELRT-------------------KAEEEADKLNKEVEDLTAS 94 (154)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHTHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777776666543 4455556666666666554
No 66
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=26.18 E-value=2.1e+02 Score=23.26 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 169 KEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEE 208 (240)
Q Consensus 169 ~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~d 208 (240)
.+|+.|+.++......++..+.+..-|+...-.|+..+.-
T Consensus 5 qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv~R 44 (155)
T 2aze_A 5 QECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQR 44 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999998873
No 67
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=25.99 E-value=1.5e+02 Score=19.63 Aligned_cols=35 Identities=31% Similarity=0.394 Sum_probs=21.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 132 EESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLL 185 (240)
Q Consensus 132 ~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl 185 (240)
+.|+.-|..|++|= +.|+..+..|+.++..+...+
T Consensus 11 esA~rSR~RKk~~~-------------------~~LE~~v~~L~~eN~~L~~~~ 45 (55)
T 1dh3_A 11 EAARESRRKKKEYV-------------------KSLENRVAVLENQNKTLIEEL 45 (55)
T ss_dssp HHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777774 556666666666555554443
No 68
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=25.93 E-value=1.9e+02 Score=22.32 Aligned_cols=40 Identities=13% Similarity=0.258 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 162 RIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDE 201 (240)
Q Consensus 162 ~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~ 201 (240)
+.|..|+++|+.++.....+-..|..+-.-|-..+..+-.
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav~~LlG 43 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTLTG 43 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5788899999999998888888888888888777776643
No 69
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=25.75 E-value=2e+02 Score=21.07 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 100 LREKENFNELKEEINRQTLQAKADIEDLKKQLEE 133 (240)
Q Consensus 100 ~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~ 133 (240)
..|.+....|+..++.+|..-+.+|+.|..++..
T Consensus 36 qkekEqL~~LKkkl~~el~~h~~ei~~le~~i~r 69 (84)
T 1gmj_A 36 ARAKEQLAALKKHKENEISHHAKEIERLQKEIER 69 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666667777777777766666553
No 70
>1ykh_A RNA polymerase II mediator complex protein MED7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.2 PDB: 1yke_A
Probab=25.26 E-value=2.3e+02 Score=21.59 Aligned_cols=39 Identities=10% Similarity=0.141 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 100 LREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIER 138 (240)
Q Consensus 100 ~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R 138 (240)
-|-.+.++.+..-++.++..-+..|++++...+.++...
T Consensus 68 yRPhQARetL~~~le~Qi~~kr~e~~~i~~~~~~~~~~L 106 (108)
T 1ykh_A 68 YRPHQSRESLIMLLEEQLEYKRGEIREIEQVCKQVHDKL 106 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366778888999999999999999999999988887654
No 71
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=24.98 E-value=2.3e+02 Score=21.68 Aligned_cols=60 Identities=17% Similarity=0.167 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 026335 117 TLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAEN 178 (240)
Q Consensus 117 i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~ 178 (240)
|...+.+|..++..|+.-...+++=.-|-. .--.+-++|+.....++.|+.+++.|..+.
T Consensus 47 idelk~ei~q~~~~lE~I~vLkaQv~IY~~--DF~aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 47 IDKLKEEAEQHKIVMETVPVLKAQADIYKA--DFQAERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 444444555555555444444333333321 111233667777778888888888777654
No 72
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=24.64 E-value=1.3e+02 Score=19.98 Aligned_cols=26 Identities=31% Similarity=0.248 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 160 TQRIITDLEKEIAALEAENTAGSRLL 185 (240)
Q Consensus 160 t~~~I~~Le~Ei~~L~~e~~~~~~kl 185 (240)
+...|-.|++||+.|+..++.-...|
T Consensus 4 Q~EEILRLErEIE~Lqrqke~~~~~L 29 (51)
T 2lw9_A 4 QVEEILRLEKEIEDLQRMKEQQELSL 29 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578889999999987766554433
No 73
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=24.21 E-value=4.3e+02 Score=24.46 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 162 RIITDLEKEIAALEAENTAGSRLLE 186 (240)
Q Consensus 162 ~~I~~Le~Ei~~L~~e~~~~~~kl~ 186 (240)
.+|..|+.-|+.+..+...++..++
T Consensus 134 ~~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 134 QRINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666554
No 74
>2kjg_A Archaeal protein SSO6904; hypothetical protein, helical protein, metal binding protein; NMR {Sulfolobus solfataricus}
Probab=23.81 E-value=96 Score=23.19 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=19.2
Q ss_pred HHHHHhHHHHHHHHHHHhcCCC
Q 026335 135 KIERQHKEECEAIRKLIAVQPP 156 (240)
Q Consensus 135 k~~R~nK~EYD~LAk~I~~~Ps 156 (240)
..+|+||.=||.++....+|.|
T Consensus 54 ~~V~knk~fy~li~~IlekYs~ 75 (99)
T 2kjg_A 54 DEIRKNKEFYDMIAEILQRYYK 75 (99)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhCc
Confidence 5689999999999999998854
No 75
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=23.58 E-value=2.2e+02 Score=20.88 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026335 185 LELRKKQFALLLHVVDELQ 203 (240)
Q Consensus 185 l~~RrkQF~~Ll~~i~~Lq 203 (240)
...|+.|.+.|...+.++-
T Consensus 90 ~Rir~~q~~~L~~kf~e~m 108 (127)
T 1ez3_A 90 LRIRKTQHSTLSRKFVEVM 108 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667777777765555443
No 76
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=23.47 E-value=2.5e+02 Score=21.41 Aligned_cols=29 Identities=14% Similarity=0.271 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 110 KEEINRQTLQAKADIEDLKKQLEESKIER 138 (240)
Q Consensus 110 ~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R 138 (240)
+..++.....+-.++..|..+|+..+-..
T Consensus 36 r~ele~~~~~l~~Ek~~L~~qL~~E~~~l 64 (129)
T 2fxo_A 36 RKELEEKMVSLLQEKNDLQLQVQAEQDNL 64 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555665554443
No 77
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=23.46 E-value=1.6e+02 Score=19.57 Aligned_cols=41 Identities=15% Similarity=0.288 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q 026335 121 KADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALE 175 (240)
Q Consensus 121 k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~ 175 (240)
..+|.-.+.-+.+|+..|+ ||.++ ..+.+|..|+.+|..++
T Consensus 8 ~EQ~~~I~~~I~qAk~~~r----~DEV~----------~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 8 LQQIHNITSFIRQAKAAGR----MDEVR----------TLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHTTC----HHHHH----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC----cHHHH----------HHHHHHHHHHHHHHHHh
Confidence 3455666666777776665 66554 34556666777666654
No 78
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=23.40 E-value=4.9e+02 Score=24.86 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=37.3
Q ss_pred HHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 77 AFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESK 135 (240)
Q Consensus 77 ~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak 135 (240)
+....|++++..+.| |..+|..=...|+.-..++...-...+.+.+..|+.=..||
T Consensus 6 ~yq~~la~yq~elar---vqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~ak 61 (497)
T 3iox_A 6 DYQAKLTAYQTELAR---VQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAK 61 (497)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 455678888888776 45667777778877777777766666666666665444443
No 79
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=23.34 E-value=2e+02 Score=20.20 Aligned_cols=37 Identities=8% Similarity=0.095 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 165 TDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDE 201 (240)
Q Consensus 165 ~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~ 201 (240)
..++..+..|...=..+...+..|++.+...|...+.
T Consensus 81 ~~i~~~l~~l~~rw~~L~~~~~~R~~~Le~aL~~~Q~ 117 (119)
T 3uun_A 81 TEVQEQMNLLNSRWECLRVASMEKQSNLHRVLMDLQN 117 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566777888888888888899999887766655443
No 80
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=22.57 E-value=3.2e+02 Score=22.45 Aligned_cols=14 Identities=29% Similarity=0.351 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 026335 120 AKADIEDLKKQLEE 133 (240)
Q Consensus 120 ~k~~Ie~LK~eL~~ 133 (240)
++.++..++.+|..
T Consensus 110 a~a~l~~a~a~l~~ 123 (277)
T 2f1m_A 110 ANAAVTAAKAAVET 123 (277)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 81
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=22.25 E-value=3e+02 Score=21.88 Aligned_cols=150 Identities=10% Similarity=0.159 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhhhhcC------CCCCChhHHHHH---HHHHHHHHhccchhhhhHH----HHHHHhHHHHHHHHHHHHHH
Q 026335 47 LKKLQKKFTSFVLEIE------KDEDNNNDCEKL---AKAFLQELSTFEIPLLKSK----AVIDANLREKENFNELKEEI 113 (240)
Q Consensus 47 LkrL~Kkf~~~~~~~~------~~~d~~~~~~~l---~e~~l~eLa~~E~s~~K~~----~v~~aN~rE~e~Y~~~~~~I 113 (240)
|-.=+..|+.|+.... +-|.+.+.++.+ ++.|-.+|....-.+.... .+...+.............+
T Consensus 18 F~~~~~~l~~Wl~~~~~~l~~~e~~~d~~~ve~ll~~H~~l~~ei~~~~~~~~~~~~~G~~Ll~~~~~~~~~i~~~l~~L 97 (218)
T 3fb2_A 18 FLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQFGQQLLAHGHYASPEIKQKLDIL 97 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCSSSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 4444556667775541 112233333332 5667777776554444322 11111111223345555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 114 NRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQ------PPRSETQRIITDLEKEIAALEAENTAGSRLLEL 187 (240)
Q Consensus 114 e~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~------PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~ 187 (240)
...-.........-+..|+++-........++.+-.-|+.. ++--.+.. ++..|-.+.+.+...+..
T Consensus 98 ~~~w~~L~~~~~~R~~~L~q~l~l~~F~~d~~~~~~WL~~~e~~L~~~~~g~s~~-------~ve~ll~~h~~f~~~l~~ 170 (218)
T 3fb2_A 98 DQERADLEKAWVQRRMMLDQCLELQLFHRDCEQAENWMAAREAFLNTEDKGDSLD-------SVEALIKKHEDFDKAINV 170 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHH-------HHHHHHHHHHHHHHHHHh
Confidence 66667777777777788888777766666666665555431 11112222 233334444444555555
Q ss_pred HHHHHHHHHHHHHHHH
Q 026335 188 RKKQFALLLHVVDELQ 203 (240)
Q Consensus 188 RrkQF~~Ll~~i~~Lq 203 (240)
....+..|......|-
T Consensus 171 ~~~~v~~l~~~~~~L~ 186 (218)
T 3fb2_A 171 QEEKIAALQAFADQLI 186 (218)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5566666666666664
No 82
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=22.15 E-value=1.7e+02 Score=19.02 Aligned_cols=47 Identities=11% Similarity=0.066 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 161 QRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTME 207 (240)
Q Consensus 161 ~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~ 207 (240)
+..+..++..+.....+...+...+......+..+...|..++..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 11 ENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555556666666666666666677777777777766553
No 83
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=21.90 E-value=1.1e+02 Score=21.56 Aligned_cols=41 Identities=15% Similarity=0.288 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q 026335 121 KADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALE 175 (240)
Q Consensus 121 k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~ 175 (240)
..+|.-.+.-+.+|+..++ ||.++ ..+.+|..|+.+|..++
T Consensus 26 ~EQ~~~I~~yI~qAk~~~r----~DEV~----------tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 26 LQQIHNITSFIRQAKAAGR----MDEVR----------TLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTC----HHHHH----------HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcC----cHHHH----------HHHHHHHHHHHHHHHHh
Confidence 3456666666777776665 66554 33556666666666554
No 84
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=21.63 E-value=3.2e+02 Score=23.25 Aligned_cols=21 Identities=10% Similarity=0.241 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026335 115 RQTLQAKADIEDLKKQLEESK 135 (240)
Q Consensus 115 ~~i~~~k~~Ie~LK~eL~~Ak 135 (240)
.++..++.++..++.+|..|+
T Consensus 76 a~l~~~~a~l~~a~~~~~~a~ 96 (341)
T 3fpp_A 76 ATLMELRAQRQQAEAELKLAR 96 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555544
No 85
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=21.12 E-value=1.7e+02 Score=21.53 Aligned_cols=52 Identities=21% Similarity=0.279 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 156 PRSETQRIITDLEKEIAALEAENTA----GSRLLELRKKQFALLLHVVDELQNTME 207 (240)
Q Consensus 156 sR~et~~~I~~Le~Ei~~L~~e~~~----~~~kl~~RrkQF~~Ll~~i~~Lq~~l~ 207 (240)
.+.+-...++.|+..|..|..-..- -..-+..||+.-.-+-..|..|+..+.
T Consensus 37 ~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 37 QEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQLDALKLRFD 92 (95)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667777777777777777665555 334456788877888888888877653
No 86
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A*
Probab=20.60 E-value=79 Score=30.97 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 105 NFNELKEEINRQTLQAKADIEDLKKQLEESKIE 137 (240)
Q Consensus 105 ~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~ 137 (240)
.++.--+.+...|...+..|.+++.+|..++..
T Consensus 465 ~~~~~m~kl~~ki~~~~~~~~~~~~~l~~~~~~ 497 (591)
T 1a31_A 465 TFEKSMMNLQTKIDAKKEQLADARRDLKSAKAD 497 (591)
T ss_dssp ---------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 344444555666666777777777777666554
No 87
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=20.58 E-value=1.1e+03 Score=27.86 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335 160 TQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTME 207 (240)
Q Consensus 160 t~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~ 207 (240)
.++++...++.+++.+.+...++.++..=+.+|...+..-+.|+..++
T Consensus 2019 ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~ 2066 (3245)
T 3vkg_A 2019 LENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESS 2066 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666677777777777777777777766665554
No 88
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=20.40 E-value=2.2e+02 Score=19.78 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhcCC
Q 026335 141 KEECEAIRKLIAVQP 155 (240)
Q Consensus 141 K~EYD~LAk~I~~~P 155 (240)
+.-|+.|...|-..|
T Consensus 18 n~~f~~Lr~lvP~~~ 32 (83)
T 1nkp_B 18 KDSFHSLRDSVPSLQ 32 (83)
T ss_dssp HHHHHHHHTTSGGGT
T ss_pred HHHHHHHHHHCCCCC
Confidence 567888888886544
No 89
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=20.19 E-value=2.8e+02 Score=22.02 Aligned_cols=82 Identities=9% Similarity=0.110 Sum_probs=46.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC---CChHHHHHHHHHHH
Q 026335 92 SKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQ---PPRSETQRIITDLE 168 (240)
Q Consensus 92 ~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~---PsR~et~~~I~~Le 168 (240)
.+++..+.+-|+.+|..-+..-+.+...+++.++.+|.. -+-.+...-.-+ ++-++.-..|-.++
T Consensus 36 q~wLq~T~E~E~q~~~~kk~~Aekql~~Ake~~eKlkKK------------rsSv~gs~~~aHs~~sslD~vD~~Il~Ak 103 (136)
T 3ter_A 36 QPLLRRTCENEMAFLEKQRQDCFKEMKEAIEMVDRLQKK------------QGSVLSSLKLATGAASTSDQVDSKIFALK 103 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------CCCCCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHccccHHHHHHHHHHHHHHHHHh------------hhchheeeeeecCCCCchHHHHHHHHHHH
Confidence 457888999999999988887777777777665444321 111111111112 34555556666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026335 169 KEIAALEAENTAGSRLL 185 (240)
Q Consensus 169 ~Ei~~L~~e~~~~~~kl 185 (240)
.-|.++......--..|
T Consensus 104 ~aL~evt~~l~Er~~RW 120 (136)
T 3ter_A 104 SRMEKIHTLTRETQERW 120 (136)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66655555544444444
Done!