Query 026336
Match_columns 240
No_of_seqs 105 out of 469
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 06:43:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026336.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026336hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05648 PEX11: Peroxisomal bi 100.0 2.8E-45 6.1E-50 309.1 22.3 213 11-226 1-223 (223)
2 KOG4186 Peroxisomal biogenesis 100.0 4.3E-42 9.3E-47 286.1 21.8 219 11-233 1-233 (233)
3 PRK11677 hypothetical protein; 58.4 84 0.0018 24.5 7.9 18 129-146 5-22 (134)
4 COG3105 Uncharacterized protei 37.4 2E+02 0.0042 22.4 7.9 20 125-144 3-25 (138)
5 PF14147 Spore_YhaL: Sporulati 29.9 1.6E+02 0.0034 19.0 5.5 26 129-154 3-28 (52)
6 PF06305 DUF1049: Protein of u 29.6 1.5E+02 0.0032 19.4 4.6 28 131-158 29-56 (68)
7 PF14711 Nitr_red_bet_C: Respi 27.0 1.1E+02 0.0025 21.7 3.8 32 31-62 32-63 (83)
8 cd00280 TRFH Telomeric Repeat 22.8 1.6E+02 0.0035 24.4 4.4 29 14-42 43-71 (200)
9 PF06295 DUF1043: Protein of u 16.0 5E+02 0.011 19.7 7.1 12 132-143 4-15 (128)
10 PF01465 GRIP: GRIP domain; I 14.5 1.7E+02 0.0036 18.2 2.1 25 13-37 11-37 (46)
No 1
>PF05648 PEX11: Peroxisomal biogenesis factor 11 (PEX11)
Probab=100.00 E-value=2.8e-45 Score=309.06 Aligned_cols=213 Identities=33% Similarity=0.469 Sum_probs=180.9
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHhcCC------Cc---chHHhHHHhhhHHHHHHHhhhhHHHHHHhhccCCCCCC
Q 026336 11 LALVVLYLNKAEARDKICRAIQYGSKFLSDG------QP---GTAQNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTP 81 (240)
Q Consensus 11 l~~l~~~l~t~~GRDK~~r~~QY~~kll~~~------~~---~~~~~l~~~ls~aRk~~Rl~k~l~~~~~~~~~~~~~~~ 81 (240)
|+++++|+++++||||++|++||+++++++. .+ ..++++++++|++||+||+||++++++++.+....+++
T Consensus 1 l~~~~~~l~~~~GrDK~~r~~qy~~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~aRk~~Rl~k~l~~l~~~~~~~~~~~~ 80 (223)
T PF05648_consen 1 LDHFVRFLSSTDGRDKLLRLLQYSSKFLAWYLARRGPSKELSKRLKALSSQLSDARKLFRLGKFLPMLQAARKYIKKKPS 80 (223)
T ss_pred CHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHHHHHhhhHHHHHHHHccHHHHHHHHHhhccCCc
Confidence 5899999999999999999999999999862 12 24689999999999999999999999999988763333
Q ss_pred chhH-HHHhhhhhHhHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 026336 82 LPLV-LLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELK 160 (240)
Q Consensus 82 ~~~~-~l~~~~~~~~~~Y~~~D~i~wl~~~gl~~~~~~~~~~~~~s~~fW~~~l~~~li~~l~~l~~l~~~~~~l~~~~~ 160 (240)
+.+. .++.++++++++|+++||++|++++|+++.+ ..++++++|++||++++++++++++++++++.+++++.+++.+
T Consensus 81 d~~~~~l~~l~~~~~~~y~~~D~~~wl~~~gl~~~~-~~~~~~~~s~~~W~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~ 159 (223)
T PF05648_consen 81 DQVLRILEILSNLFMFLYYLLDNLVWLSKLGLLPNK-SKKKWSRWSNRFWFASLVLSLVRDLRELRRLRQKERSLKKQLK 159 (223)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 4443 4778899999999999999999999999986 3459999999999999999999999999988877666655433
Q ss_pred ccchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCCCCCCCccchhhhhHHHHHHHHHHhc
Q 026336 161 DSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQVS 226 (240)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~l~lv~~~~D~~i~~~~l~~~~~~~~~g~vG~~G~iSsli~~y~~w 226 (240)
++++.++++.++..+++++..+++++|+||+++|++++|+. .++||++|++|++||++|+|++|
T Consensus 160 ~~~~~~~~~l~~~~~~~~~~~l~lv~~~~D~~~~~~~l~~~--~~~~~~vg~~G~iSs~i~~~~~W 223 (223)
T PF05648_consen 160 EKDENEEEKLKKLRKERRALLLDLVKNLCDLIIAVHWLGWL--KVSDGVVGLLGLISSLIGLYQLW 223 (223)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCe--eCChhhHHHHHHHHHHHHHHHhC
Confidence 33322233344666778888999999999999999999885 59999999999999999999999
No 2
>KOG4186 consensus Peroxisomal biogenesis protein (peroxin) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.3e-42 Score=286.11 Aligned_cols=219 Identities=35% Similarity=0.471 Sum_probs=179.2
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHhcC----CCcchH---HhHHHhhhHHHHHHHhhhhHHHHHHhhccC--CCCCC
Q 026336 11 LALVVLYLNKAEARDKICRAIQYGSKFLSD----GQPGTA---QNVDKSTSLARKVFRLFKFVNDLHALISPV--PQGTP 81 (240)
Q Consensus 11 l~~l~~~l~t~~GRDK~~r~~QY~~kll~~----~~~~~~---~~l~~~ls~aRk~~Rl~k~l~~~~~~~~~~--~~~~~ 81 (240)
++++++|+++++||||++|.+||+|+++++ ++|+.+ +++++++|.+||+||+||++++++++.++. +.+++
T Consensus 1 ~d~lv~~ln~~~gRDKl~RalQY~akll~~~l~~~~p~~a~~~~kles~~S~~RK~~Rl~k~l~~~~~~~~~~~~~~~~~ 80 (233)
T KOG4186|consen 1 LDHLVRFLNSAAGRDKLCRALQYVAKLLSWHLEAGSPELAKRLKKLESQLSLARKVLRLGKDLNMFQAALQYGLVPLGTD 80 (233)
T ss_pred CcHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccCCCCCc
Confidence 478999999999999999999999999999 678754 678889999999999999999999999983 44433
Q ss_pred chhHHHHhhhhhHhHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHH
Q 026336 82 LPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMK---KLEKE 158 (240)
Q Consensus 82 ~~~~~l~~~~~~~~~~Y~~~D~i~wl~~~gl~~~~~~~~~~~~~s~~fW~~~l~~~li~~l~~l~~l~~~~~---~l~~~ 158 (240)
..+..+++++|+.+.+|+++|||.|++++|+++.+ .++|...+...|.+++.++++++++.+..+++... +..++
T Consensus 81 ~~lr~~~~l~n~~~~~Y~~~D~v~Wl~~~gi~~~~--~~~~~~~~~~~w~~sl~l~~~r~~~~~~~~~r~~~~~k~~~~~ 158 (233)
T KOG4186|consen 81 NVLRLLGVLKNLAFALYLFLDHVLWLARTGIIPVK--SERWKISRISLWLLSLGLNLCRDMYEVFELQRLSSSIKKKTKS 158 (233)
T ss_pred chhhHHHHHhHHHHHHHHHHHHHHHHHHhCCcccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccC
Confidence 33445788999999999999999999999999986 38899999999999999999999888655544221 12223
Q ss_pred hhccchhhHHHHHHHHHH--hhHHHHHHHHHHHHHHHHhhhccCCCCCCCccchhhhhHHHHHHHHHHhchhhcccc
Q 026336 159 LKDSDKHKNEQYQAKLKK--SNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQVSNSTANFR 233 (240)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~--~~~~~l~lv~~~~D~~i~~~~l~~~~~~~~~g~vG~~G~iSsli~~y~~w~~t~k~~ 233 (240)
++++++.+.+..++.+.. ++...++...+.||..+|.+.++. ++++|++||++|++||++|+|++|++++|++
T Consensus 159 ~~~~~e~~~~~l~~~~~~~~~~~l~l~~~~~~~~~~ipl~~L~~--~k~~p~~vGl~G~vSSilg~y~~~~~~~~~k 233 (233)
T KOG4186|consen 159 ISSGDEEDREKLQAQQLDQNHRLLLLSADFNAADSALPLGQLGP--GKLNPRQVGLFGLVSSILGMYQLWPPRPKLK 233 (233)
T ss_pred CCCccHHHHHHHHHHHHHccchHHHHHHHHHHHHHhhhhhccCc--CcCChhHhhHHHHHHHHHHHHHHccccccCC
Confidence 333333333434333332 666789999999999999999866 6799999999999999999999999998864
No 3
>PRK11677 hypothetical protein; Provisional
Probab=58.39 E-value=84 Score=24.46 Aligned_cols=18 Identities=6% Similarity=-0.032 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026336 129 CWMGSSVCSTLVELGELG 146 (240)
Q Consensus 129 fW~~~l~~~li~~l~~l~ 146 (240)
.|++++++|++.+....+
T Consensus 5 ~a~i~livG~iiG~~~~R 22 (134)
T PRK11677 5 YALIGLVVGIIIGAVAMR 22 (134)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455666777777755443
No 4
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.36 E-value=2e+02 Score=22.37 Aligned_cols=20 Identities=10% Similarity=0.169 Sum_probs=13.0
Q ss_pred HHHHHHHHH---HHHHHHHHHHH
Q 026336 125 ISLFCWMGS---SVCSTLVELGE 144 (240)
Q Consensus 125 ~s~~fW~~~---l~~~li~~l~~ 144 (240)
|+...|.+. +|.|++.+...
T Consensus 3 wt~~~W~~a~igLvvGi~IG~li 25 (138)
T COG3105 3 WTFMTWEYALIGLVVGIIIGALI 25 (138)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 566778765 56677766443
No 5
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=29.93 E-value=1.6e+02 Score=19.02 Aligned_cols=26 Identities=4% Similarity=0.045 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHH
Q 026336 129 CWMGSSVCSTLVELGELGRLSTSMKK 154 (240)
Q Consensus 129 fW~~~l~~~li~~l~~l~~l~~~~~~ 154 (240)
.|.+.++.+++-+.+-..+....+++
T Consensus 3 wWvY~vi~gI~~S~ym~v~t~~eE~~ 28 (52)
T PF14147_consen 3 WWVYFVIAGIIFSGYMAVKTAKEERE 28 (52)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999887766655444443
No 6
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.55 E-value=1.5e+02 Score=19.44 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 026336 131 MGSSVCSTLVELGELGRLSTSMKKLEKE 158 (240)
Q Consensus 131 ~~~l~~~li~~l~~l~~l~~~~~~l~~~ 158 (240)
++|.+++.+..+....+.+.+.++++++
T Consensus 29 ~~G~llg~l~~~~~~~~~r~~~~~~~k~ 56 (68)
T PF06305_consen 29 LLGALLGWLLSLPSRLRLRRRIRRLRKE 56 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544444444444444443
No 7
>PF14711 Nitr_red_bet_C: Respiratory nitrate reductase beta C-terminal; PDB: 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B 1Y4Z_B 1Y5L_B 3IR6_B 3IR5_B ....
Probab=27.04 E-value=1.1e+02 Score=21.67 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=21.5
Q ss_pred HHHHHHHhcCCCcchHHhHHHhhhHHHHHHHh
Q 026336 31 IQYGSKFLSDGQPGTAQNVDKSTSLARKVFRL 62 (240)
Q Consensus 31 ~QY~~kll~~~~~~~~~~l~~~ls~aRk~~Rl 62 (240)
++|.+.+++.|+.+.++..=..+-.-|..+|-
T Consensus 32 i~YLAnLftAGd~~~V~~~L~rL~AmR~ymR~ 63 (83)
T PF14711_consen 32 IEYLANLFTAGDEEPVRRALKRLLAMRSYMRA 63 (83)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCChHHHHHHHHHHHHHHHHHHH
Confidence 79999999999876665444444456766664
No 8
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=22.80 E-value=1.6e+02 Score=24.40 Aligned_cols=29 Identities=21% Similarity=0.170 Sum_probs=24.0
Q ss_pred HHHHhcccchHHHHHHHHHHHHHHhcCCC
Q 026336 14 VVLYLNKAEARDKICRAIQYGSKFLSDGQ 42 (240)
Q Consensus 14 l~~~l~t~~GRDK~~r~~QY~~kll~~~~ 42 (240)
++..+..+.-++|.+|+.|+.+|+-.+-+
T Consensus 43 l~~~~~~~a~~~k~l~i~QfLsRI~eG~~ 71 (200)
T cd00280 43 LVGPLKLTATQLKTLRIMQFLSRIAEGKN 71 (200)
T ss_pred HhccccccccchhHhHHHHHHHHHHcCCC
Confidence 45667777789999999999999998743
No 9
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=16.04 E-value=5e+02 Score=19.69 Aligned_cols=12 Identities=8% Similarity=-0.025 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 026336 132 GSSVCSTLVELG 143 (240)
Q Consensus 132 ~~l~~~li~~l~ 143 (240)
+++++|++.+..
T Consensus 4 i~lvvG~iiG~~ 15 (128)
T PF06295_consen 4 IGLVVGLIIGFL 15 (128)
T ss_pred HHHHHHHHHHHH
Confidence 344555554443
No 10
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=14.50 E-value=1.7e+02 Score=18.16 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=17.4
Q ss_pred HHHHHhcccc--hHHHHHHHHHHHHHH
Q 026336 13 LVVLYLNKAE--ARDKICRAIQYGSKF 37 (240)
Q Consensus 13 ~l~~~l~t~~--GRDK~~r~~QY~~kl 37 (240)
-+.+|+.+.+ +|+++++.+.-..+|
T Consensus 11 vl~~fl~~~~~~~~~~llpvi~tlL~f 37 (46)
T PF01465_consen 11 VLLQFLESREPSEREQLLPVIATLLKF 37 (46)
T ss_dssp HHHHHHTTSS---HHHHHHHHHHHTT-
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHHCC
Confidence 3678888887 899999888655443
Done!