Query 026336
Match_columns 240
No_of_seqs 105 out of 469
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 11:10:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026336.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026336hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vr8_C Cytochrome B-large subu 15.7 72 0.0024 25.2 2.0 29 208-236 158-186 (188)
2 2kxa_A Haemagglutinin HA2 chai 14.0 79 0.0027 17.0 1.2 10 211-220 1-10 (30)
3 3g43_E Voltage-dependent L-typ 11.9 2.8E+02 0.0095 18.7 3.8 23 175-197 32-54 (81)
4 1bde_A VPR protein; AIDS, HIV, 10.6 70 0.0024 18.0 0.4 18 17-34 2-19 (35)
5 1kbh_A ACTR, nuclear receptor 9.8 2.7E+02 0.0093 16.6 2.8 25 8-32 7-33 (47)
6 3bpo_A Interleukin 13; IL4, IL 8.0 2.3E+02 0.008 20.5 2.4 29 45-73 93-121 (127)
7 3g2s_A C-terminal fragment of 7.7 3.8E+02 0.013 19.8 3.7 33 7-39 89-129 (149)
8 3bu8_A Telomeric repeat-bindin 7.4 2.6E+02 0.009 22.6 2.7 34 8-41 39-73 (235)
9 1mhq_A ADP-ribosylation factor 7.2 3.6E+02 0.012 19.9 3.4 33 7-39 79-119 (148)
10 2z2q_B Coat protein gamma; wil 6.5 4.3E+02 0.015 15.4 2.6 39 178-219 4-42 (44)
No 1
>3vr8_C Cytochrome B-large subunit; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_C*
Probab=15.68 E-value=72 Score=25.18 Aligned_cols=29 Identities=14% Similarity=0.144 Sum_probs=24.1
Q ss_pred cchhhhhHHHHHHHHHHhchhhccccccc
Q 026336 208 RVTGAFGFVTSLISCYQVSNSTANFRLIS 236 (240)
Q Consensus 208 g~vG~~G~iSsli~~y~~w~~t~k~~~~~ 236 (240)
.++++.-+++-+++.|..|+...|.++|.
T Consensus 158 ~vl~lSvvltl~la~~~~~~~~~~~~~~~ 186 (188)
T 3vr8_C 158 LVLGLAALISLAVVVYPRWERHKKATLPT 186 (188)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhccccCCC
Confidence 45666667788899999999999999885
No 2
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=13.97 E-value=79 Score=16.96 Aligned_cols=10 Identities=40% Similarity=0.893 Sum_probs=6.9
Q ss_pred hhhhHHHHHH
Q 026336 211 GAFGFVTSLI 220 (240)
Q Consensus 211 G~~G~iSsli 220 (240)
|++|.|++.|
T Consensus 1 GlFGAIAGfi 10 (30)
T 2kxa_A 1 GLFGAIAGFI 10 (30)
T ss_dssp CHHHHHHHHH
T ss_pred Ccchhhhhhh
Confidence 5677777765
No 3
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB: 3oxq_E
Probab=11.92 E-value=2.8e+02 Score=18.66 Aligned_cols=23 Identities=13% Similarity=-0.120 Sum_probs=14.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhh
Q 026336 175 KKSNERSLALVKSAMDIVVAVGL 197 (240)
Q Consensus 175 ~~~~~~~l~lv~~~~D~~i~~~~ 197 (240)
+.....+-.+-+..+|.++|-+.
T Consensus 32 ~~i~~iWp~~~~k~lD~lvpp~~ 54 (81)
T 3g43_E 32 AIIKKIWKRTSMKLLDQVVPPAG 54 (81)
T ss_dssp HHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHCcccChhhcccccCCCC
Confidence 33445567788999999998653
No 4
>1bde_A VPR protein; AIDS, HIV, viral protein, VPR fragment, helix; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1dsj_A
Probab=10.60 E-value=70 Score=18.00 Aligned_cols=18 Identities=22% Similarity=0.170 Sum_probs=13.3
Q ss_pred HhcccchHHHHHHHHHHH
Q 026336 17 YLNKAEARDKICRAIQYG 34 (240)
Q Consensus 17 ~l~t~~GRDK~~r~~QY~ 34 (240)
|-+|.+|-+.+.|++|=.
T Consensus 2 yGDTw~GveaiiriLQq~ 19 (35)
T 1bde_A 2 YGDTWAGVEAIIRILQQL 19 (35)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHH
Confidence 446778888888888854
No 5
>1kbh_A ACTR, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Homo sapiens} SCOP: a.153.1.1
Probab=9.79 E-value=2.7e+02 Score=16.60 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcccc--hHHHHHHHHH
Q 026336 8 RAELALVVLYLNKAE--ARDKICRAIQ 32 (240)
Q Consensus 8 ~~~l~~l~~~l~t~~--GRDK~~r~~Q 32 (240)
...++++..+|++++ |.+-+=|.+.
T Consensus 7 ~aLl~QL~~~L~~~d~~~LeEiDrALG 33 (47)
T 1kbh_A 7 RALLDQLHTLLSNTDATGLEEIDRALG 33 (47)
T ss_dssp HHHHHHHHHHTTSSCCTTHHHHHHHTT
T ss_pred HHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 578999999999888 8877777665
No 6
>3bpo_A Interleukin 13; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 1ijz_A 1ik0_A 3g6d_A 3l5w_I 3l5x_A* 3l5y_A 1ga3_A
Probab=7.97 E-value=2.3e+02 Score=20.52 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=18.6
Q ss_pred hHHhHHHhhhHHHHHHHhhhhHHHHHHhh
Q 026336 45 TAQNVDKSTSLARKVFRLFKFVNDLHALI 73 (240)
Q Consensus 45 ~~~~l~~~ls~aRk~~Rl~k~l~~~~~~~ 73 (240)
.+.-+..-+...|++||=++|-+.|..+.
T Consensus 93 v~qfik~LL~~~r~~fR~g~f~~~~~~~~ 121 (127)
T 3bpo_A 93 VAQFVKDLLLHLKKLFREGQFNRNFESII 121 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC--------
T ss_pred HHHHHHHHHHHHHHHHccCchhcccceeE
Confidence 45678899999999999999988876654
No 7
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=7.75 E-value=3.8e+02 Score=19.82 Aligned_cols=33 Identities=12% Similarity=0.027 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHhcc--------cchHHHHHHHHHHHHHHhc
Q 026336 7 TRAELALVVLYLNK--------AEARDKICRAIQYGSKFLS 39 (240)
Q Consensus 7 ~~~~l~~l~~~l~t--------~~GRDK~~r~~QY~~kll~ 39 (240)
..++++.++++++. ..=|+|++.++|-++.-+.
T Consensus 89 s~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 129 (149)
T 3g2s_A 89 KFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP 129 (149)
T ss_dssp SHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 46789999998853 3468999999998887653
No 8
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=7.38 E-value=2.6e+02 Score=22.64 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=24.3
Q ss_pred HHHHHHHH-HHhcccchHHHHHHHHHHHHHHhcCC
Q 026336 8 RAELALVV-LYLNKAEARDKICRAIQYGSKFLSDG 41 (240)
Q Consensus 8 ~~~l~~l~-~~l~t~~GRDK~~r~~QY~~kll~~~ 41 (240)
++.++.++ .=++....-+|.+|++|+.+|+..+-
T Consensus 39 rdi~eall~~~l~~~~~~~k~iri~QfLsRI~eG~ 73 (235)
T 3bu8_A 39 RDIMQALLVRPLGKEHTVSRLLRVMQCLSRIEEGE 73 (235)
T ss_dssp HHHHHHHTTSCCCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhCcccccccchhHHHHHHHHHHHHcCC
Confidence 34444444 45566666789999999999998763
No 9
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=7.19 E-value=3.6e+02 Score=19.87 Aligned_cols=33 Identities=6% Similarity=0.086 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHhcc--------cchHHHHHHHHHHHHHHhc
Q 026336 7 TRAELALVVLYLNK--------AEARDKICRAIQYGSKFLS 39 (240)
Q Consensus 7 ~~~~l~~l~~~l~t--------~~GRDK~~r~~QY~~kll~ 39 (240)
..++++.++++++. ..=|+|++.++|-++.-+.
T Consensus 79 s~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (148)
T 1mhq_A 79 KFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFP 119 (148)
T ss_dssp SHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 46889999988863 2468999999998887653
No 10
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=6.53 E-value=4.3e+02 Score=15.40 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCCCCCCCccchhhhhHHHHH
Q 026336 178 NERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSL 219 (240)
Q Consensus 178 ~~~~l~lv~~~~D~~i~~~~l~~~~~~~~~g~vG~~G~iSsl 219 (240)
+|+...+++..+-.. ..++-+-+....|+.|+.++++++
T Consensus 4 WErVk~ilks~l~a~---S~iPGPVG~~asGi~~l~~l~~~l 42 (44)
T 2z2q_B 4 WERVKSIIKSSLAAA---SNIPGPIGVAASGISGLSALFEGF 42 (44)
T ss_pred HHHHHHHHHHHHHHH---hcCCCchhHHHHhHHHHHHHHHHh
Confidence 455566666554332 232111133456777777777664
Done!