Query 026336
Match_columns 240
No_of_seqs 105 out of 469
Neff 7.9
Searched_HMMs 13730
Date Mon Mar 25 11:11:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026336.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026336hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1be3k_ f.23.15.1 (K:) Subunit 20.5 15 0.0011 17.5 0.7 11 208-218 11-21 (26)
2 d2gnoa1 a.80.1.1 (A:209-306) g 18.0 1.1E+02 0.0079 18.9 4.7 31 9-40 23-53 (98)
3 d1kbha_ a.153.1.1 (A:) Nuclear 10.3 1.2E+02 0.009 16.5 2.9 25 7-31 6-32 (47)
4 d1h6pa_ a.146.1.1 (A:) TRF2 {H 9.7 58 0.0042 24.1 1.7 35 7-41 37-72 (203)
5 d1xl3c1 a.243.1.1 (C:2-92) Tye 8.6 47 0.0034 21.4 0.7 19 17-35 58-76 (91)
6 d1mkma1 a.4.5.33 (A:1-75) Tran 7.0 1.2E+02 0.0087 17.9 2.1 47 24-73 4-51 (75)
7 d3bqoa1 a.146.1.1 (A:62-265) T 6.1 1.2E+02 0.009 22.2 2.0 29 14-42 48-76 (204)
8 d1dvpa1 a.118.9.2 (A:1-145) Hr 5.3 2.9E+02 0.021 18.3 3.8 33 8-40 84-119 (145)
9 d1kcfa1 a.140.2.1 (A:3-38) Mit 5.2 2.2E+02 0.016 14.1 2.2 9 30-38 6-14 (36)
10 d1jeoa_ c.80.1.3 (A:) Probable 5.0 1.7E+02 0.013 20.1 2.4 66 1-69 1-69 (177)
No 1
>d1be3k_ f.23.15.1 (K:) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.49 E-value=15 Score=17.47 Aligned_cols=11 Identities=36% Similarity=0.691 Sum_probs=7.7
Q ss_pred cchhhhhHHHH
Q 026336 208 RVTGAFGFVTS 218 (240)
Q Consensus 208 g~vG~~G~iSs 218 (240)
|.||..|++|+
T Consensus 11 gavgavglvsa 21 (26)
T d1be3k_ 11 GAVGAVGLVSA 21 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhcceeEEee
Confidence 56777777775
No 2
>d2gnoa1 a.80.1.1 (A:209-306) gamma subunit {Thermotoga maritima [TaxId: 2336]}
Probab=17.96 E-value=1.1e+02 Score=18.90 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHhcC
Q 026336 9 AELALVVLYLNKAEARDKICRAIQYGSKFLSD 40 (240)
Q Consensus 9 ~~l~~l~~~l~t~~GRDK~~r~~QY~~kll~~ 40 (240)
.+.+-|-...+|..|||-++ ++|-..|++.+
T Consensus 23 ~ff~lfdqv~ntitg~dafl-liq~~~riilh 53 (98)
T d2gnoa1 23 EFFALFDQVTNTITGKDAFL-LIQRLTRIILH 53 (98)
T ss_dssp GHHHHHHHHHHHSCTHHHHH-HHHHHHHHHHH
T ss_pred hHHHHHHHHHhhcccchHHH-HHHHHHHHhcc
Confidence 46777788899999999876 67888888765
No 3
>d1kbha_ a.153.1.1 (A:) Nuclear receptor coactivator ACTR {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.28 E-value=1.2e+02 Score=16.53 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHhcccc--hHHHHHHHH
Q 026336 7 TRAELALVVLYLNKAE--ARDKICRAI 31 (240)
Q Consensus 7 ~~~~l~~l~~~l~t~~--GRDK~~r~~ 31 (240)
....++++..+|+.++ |.+-+=|.+
T Consensus 6 E~aLldQL~s~L~~~D~~~LeEiDrAL 32 (47)
T d1kbha_ 6 ERALLDQLHTLLSNTDATGLEEIDRAL 32 (47)
T ss_dssp HHHHHHHHHHHTTSSCCTTHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHh
Confidence 3567999999999777 776665554
No 4
>d1h6pa_ a.146.1.1 (A:) TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.74 E-value=58 Score=24.08 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=23.8
Q ss_pred hHHHHHH-HHHHhcccchHHHHHHHHHHHHHHhcCC
Q 026336 7 TRAELAL-VVLYLNKAEARDKICRAIQYGSKFLSDG 41 (240)
Q Consensus 7 ~~~~l~~-l~~~l~t~~GRDK~~r~~QY~~kll~~~ 41 (240)
.++.++. ++..++....-+|.+|+.|+.+|+-.+.
T Consensus 37 ~rdi~eall~~~~~~~~~~~kti~i~QfL~RI~eG~ 72 (203)
T d1h6pa_ 37 IRDIMQALLVRPLGKEHTVSRLLRVMQCLSRIEEGE 72 (203)
T ss_dssp HHHHHHHHTTSCCC----CHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCccccccchhhHHHHHHHHHHHHcCC
Confidence 3445555 4477778888999999999999999874
No 5
>d1xl3c1 a.243.1.1 (C:2-92) TyeA {Yersinia pestis [TaxId: 632]}
Probab=8.62 E-value=47 Score=21.36 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=15.7
Q ss_pred HhcccchHHHHHHHHHHHH
Q 026336 17 YLNKAEARDKICRAIQYGS 35 (240)
Q Consensus 17 ~l~t~~GRDK~~r~~QY~~ 35 (240)
..+..++|+|++..+|=+.
T Consensus 58 ~f~d~e~R~~lL~a~Q~AL 76 (91)
T d1xl3c1 58 VFSDEEQRQNLLQMCQNAI 76 (91)
T ss_dssp GSSCHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHH
Confidence 4577889999999999654
No 6
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=6.99 E-value=1.2e+02 Score=17.93 Aligned_cols=47 Identities=4% Similarity=0.157 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHhcCCCcchHHhHHHhhhHHH-HHHHhhhhHHHHHHhh
Q 026336 24 RDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLAR-KVFRLFKFVNDLHALI 73 (240)
Q Consensus 24 RDK~~r~~QY~~kll~~~~~~~~~~l~~~ls~aR-k~~Rl~k~l~~~~~~~ 73 (240)
-||.++++.+++. ...|-....++..++..| .+.|+.+.+.....+.
T Consensus 4 l~r~l~IL~~~a~---~~~~~s~~eia~~~~~~~st~~rll~tL~~~g~l~ 51 (75)
T d1mkma1 4 LKKAFEILDFIVK---NPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVL 51 (75)
T ss_dssp HHHHHHHHHHHHH---CSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHh---CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3566777776552 222334556666666555 3556666665544443
No 7
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.06 E-value=1.2e+02 Score=22.19 Aligned_cols=29 Identities=3% Similarity=-0.034 Sum_probs=23.2
Q ss_pred HHHHhcccchHHHHHHHHHHHHHHhcCCC
Q 026336 14 VVLYLNKAEARDKICRAIQYGSKFLSDGQ 42 (240)
Q Consensus 14 l~~~l~t~~GRDK~~r~~QY~~kll~~~~ 42 (240)
++..++.+.-+.|.+|+.|+.+|+-.+-+
T Consensus 48 l~~~~~~~~~~~k~i~i~QfLsRI~eG~~ 76 (204)
T d3bqoa1 48 IHGLSSLTACQLRTIYICQFLTRIAAGKT 76 (204)
T ss_dssp HHTCSCCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HhCccccCccchhHHHHHHHHHHHHcCCC
Confidence 45566777778899999999999988743
No 8
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=5.33 E-value=2.9e+02 Score=18.28 Aligned_cols=33 Identities=12% Similarity=0.219 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhccc---chHHHHHHHHHHHHHHhcC
Q 026336 8 RAELALVVLYLNKA---EARDKICRAIQYGSKFLSD 40 (240)
Q Consensus 8 ~~~l~~l~~~l~t~---~GRDK~~r~~QY~~kll~~ 40 (240)
.++++.+.++.++. .-++|++.++|-++.-..+
T Consensus 84 ~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (145)
T d1dvpa1 84 KENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRS 119 (145)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 56777777777554 4688888888888876643
No 9
>d1kcfa1 a.140.2.1 (A:3-38) Mitochondrial resolvase ydc2 N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=5.24 E-value=2.2e+02 Score=14.07 Aligned_cols=9 Identities=22% Similarity=0.021 Sum_probs=4.0
Q ss_pred HHHHHHHHh
Q 026336 30 AIQYGSKFL 38 (240)
Q Consensus 30 ~~QY~~kll 38 (240)
++|..|++.
T Consensus 6 flqhicklt 14 (36)
T d1kcfa1 6 FLQHICKLT 14 (36)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 344444443
No 10
>d1jeoa_ c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isomerase MJ1247 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=5.01 E-value=1.7e+02 Score=20.07 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=41.0
Q ss_pred CcchhhhHHHHHHHHHHhcccchHHHHHHHHHHHHHH---hcCCCcchHHhHHHhhhHHHHHHHhhhhHHHH
Q 026336 1 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKF---LSDGQPGTAQNVDKSTSLARKVFRLFKFVNDL 69 (240)
Q Consensus 1 ~~~l~~~~~~l~~l~~~l~t~~GRDK~~r~~QY~~kl---l~~~~~~~~~~l~~~ls~aRk~~Rl~k~l~~~ 69 (240)
|++||-....+..+.+++...+..|++=++++...+- +..|. +.-..+.. ..++++.|+|.+...+
T Consensus 1 ~~~~d~~~~~i~~l~~~~~~~~~~~~i~~~~~~i~~a~~I~~~G~-G~S~~~a~--~~~~~l~~lg~~~~~~ 69 (177)
T d1jeoa_ 1 LEELDIVSNNILILKKFYTNDEWKNKLDSLIDRIIKAKKIFIFGV-GRSGYIGR--CFAMRLMHLGFKSYFV 69 (177)
T ss_dssp CHHHHHHHHHHHGGGHHHHCHHHHHHHHHHHHHHHHCSSEEEECC-HHHHHHHH--HHHHHHHHTTCCEEET
T ss_pred CchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHCCCeEEEEEc-cHHHHHHH--HHHHHHHhcCCccccc
Confidence 7889999999999999988888888777776654322 11111 11111122 2457788888665433
Done!