Query 026337
Match_columns 240
No_of_seqs 130 out of 738
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 06:44:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026337.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026337hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03202 protein argonaute; Pr 100.0 1E-42 2.2E-47 337.5 23.9 222 2-224 32-278 (900)
2 KOG1042 Germ-line stem cell di 100.0 2.5E-29 5.4E-34 227.0 7.8 181 9-225 88-271 (845)
3 KOG1041 Translation initiation 99.9 5.1E-26 1.1E-30 220.0 19.0 219 2-232 44-269 (876)
4 PF08699 DUF1785: Domain of un 99.8 1.8E-21 4E-26 124.3 4.2 52 161-213 1-52 (52)
5 PF14699 hGDE_N: N-terminal do 43.1 62 0.0014 22.6 4.5 16 7-22 6-21 (86)
6 PF09261 Alpha-mann_mid: Alpha 23.5 22 0.00047 24.2 -0.5 10 183-192 1-10 (80)
7 PF10297 Hap4_Hap_bind: Minima 19.2 74 0.0016 15.2 1.0 10 2-11 6-15 (17)
8 PF11004 Kdo_hydroxy: 3-deoxy- 18.6 86 0.0019 27.0 2.0 20 3-24 132-151 (281)
9 PRK15351 type III secretion sy 18.5 1.2E+02 0.0026 22.1 2.4 43 187-229 68-111 (124)
10 PF14848 HU-DNA_bdg: DNA-bindi 18.4 3.4E+02 0.0074 20.1 5.1 44 109-152 14-58 (124)
No 1
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=1e-42 Score=337.54 Aligned_cols=222 Identities=36% Similarity=0.529 Sum_probs=185.0
Q ss_pred CCCCCCCCCCCCCeEEEEeeeeEeEcC--CCcEEEeeeEecCC----CCchHHHHHHHHHHHHHhhhcccCCCcceecCc
Q 026337 2 RFPVRPGFGTVGKKCVVRANHFMVQLA--ERDIHHYDVSITPE----VTSKKINRQIISQLINLYRLTHLGERMPAYDGM 75 (240)
Q Consensus 2 ~~p~RP~~Gt~G~~i~l~tN~f~i~~~--~~~iy~Y~V~i~p~----~~~~~~~r~i~~~l~~~~~~~~~~~~~~~yDG~ 75 (240)
.+|+||||||.|++|+|+||||+|.++ +..+|||+|+|+|+ ..+++++++|++.++++... .+.+..+||||+
T Consensus 32 ~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~Dg~ 110 (900)
T PLN03202 32 LPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSS-DLAGKDFAYDGE 110 (900)
T ss_pred ccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHH-hhCCCceeecCc
Confidence 467899999999999999999999974 67899999999964 34577888899988876543 344447999999
Q ss_pred cceeecCCCCCCcceEEEEcCCCCCCC----------CCC--------CCCCCCceEEEEEEeecccChHHHHHHHccCC
Q 026337 76 KSIYTAGPLPFESKEFIIKLPDSDPRP----------SSS--------TRPRRERQFRVVIRLASKPDLYTLQQFLLRRH 137 (240)
Q Consensus 76 ~~lys~~~L~~~~~~~~v~~~~~~~~~----------~~~--------~~~~~~~~~~v~i~~~~~i~~~~l~~~~~~~~ 137 (240)
++|||+.+|+.+..++.|++.++.+.. +.+ .+..+++.|+|+|++++++++++|.+|+.|..
T Consensus 111 ~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~~l~~~~ 190 (900)
T PLN03202 111 KSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANALRGQE 190 (900)
T ss_pred cceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHHHHcCCC
Confidence 999999999976567778776421100 000 00124688999999999999999999999998
Q ss_pred CCCchhHHHHHHHHhhcCCCC-CccccccccccCCCCCcccCCCcEEEEeeeeeeeeeeCCeeEEeeeccccccccCCcH
Q 026337 138 FEAPYEVIQVLDVVLRAAPSE-KHTVVGRSFFSTDLGPVGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILV 216 (240)
Q Consensus 138 ~~~~~~~iq~Lniilr~~~~~-~~~~~Gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LNvD~a~~~F~~~~~l 216 (240)
.+.+.++|||||||+|+.++. .++.+||+||........++++|+|+|+||++||||++++|+||+|++|++|++++||
T Consensus 191 ~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~l 270 (900)
T PLN03202 191 SENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIVQPGPV 270 (900)
T ss_pred CCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeeeecCCcH
Confidence 788899999999999999985 5899999999765434567899999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 026337 217 TEFVQYYC 224 (240)
Q Consensus 217 ~d~i~~~~ 224 (240)
+|+|.++.
T Consensus 271 ~~~l~~~~ 278 (900)
T PLN03202 271 VDFLIANQ 278 (900)
T ss_pred HHHHHHhc
Confidence 99998874
No 2
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=2.5e-29 Score=226.99 Aligned_cols=181 Identities=19% Similarity=0.348 Sum_probs=152.2
Q ss_pred CCCCCCeEEEEeeeeEeEc-CCCcEEEeeeEecCCCCchHHHHHHHHHHHHHhhhcccCCCcceecCccceeecCCCCCC
Q 026337 9 FGTVGKKCVVRANHFMVQL-AERDIHHYDVSITPEVTSKKINRQIISQLINLYRLTHLGERMPAYDGMKSIYTAGPLPFE 87 (240)
Q Consensus 9 ~Gt~G~~i~l~tN~f~i~~-~~~~iy~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~~yDG~~~lys~~~L~~~ 87 (240)
.|+.|.+|+|.||||++.. |++.+|||+|+|.|++++++++++++. ++. +..| ..++|||. .||.+++++.+
T Consensus 88 tGssG~pv~l~tN~f~l~t~p~w~iyqYhVef~P~ves~rlR~~~L~----~h~-~lig-~~~~FDG~-iLfl~~k~eq~ 160 (845)
T KOG1042|consen 88 TGSSGIPVKLQTNFFRLMTRPDWSIYQYHVEFEPDVESRRLREALLY----NHT-DLIG-KGYAFDGT-ILFLKEKFEQK 160 (845)
T ss_pred cCCCCceEEEEeceeeeccCCCcEEEEEEEeeccccccHHHHHHHHH----HhH-hhhc-cceeecce-eehhhHHHhhh
Confidence 6999999999999999876 489999999999999999998876543 332 3344 47899995 89999999853
Q ss_pred cceEEEEcCCCCCCCCCCCCCCCCceEEEEEEeecccChHHHHHHHccCCCCCchhHHHHHHHHhhcCCC-CCccccccc
Q 026337 88 SKEFIIKLPDSDPRPSSSTRPRRERQFRVVIRLASKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPS-EKHTVVGRS 166 (240)
Q Consensus 88 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~l~~~~~~~~~~~~~~~iq~Lniilr~~~~-~~~~~~Gr~ 166 (240)
... +... ...+..++|+|++++++.. .++++||++|+|+|+.+. +++.++|||
T Consensus 161 -~te---l~~k---------s~~ge~i~I~ik~~~~~~~-------------t~p~~iqv~NlI~RR~~k~L~L~qigRn 214 (845)
T KOG1042|consen 161 -QTE---LVSK---------SRDGELIKITIKLTNELPS-------------TDPQCIQVFNLILRRSMKGLNLTQIGRN 214 (845)
T ss_pred -hhe---eecc---------cCCCceEEEEEEEeccccC-------------CChhHHHHHHHHHHHHHhhccHHHhhhc
Confidence 211 1111 0567889999999998874 357899999999999998 799999999
Q ss_pred cccCCCCCcccC-CCcEEEEeeeeeeeeeeCCeeEEeeeccccccccCCcHHHHHHHHhh
Q 026337 167 FFSTDLGPVGQL-GDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYYCR 225 (240)
Q Consensus 167 ff~~~~~~~~~l-~~gle~~~G~~~Svr~~~~~l~LNvD~a~~~F~~~~~l~d~i~~~~~ 225 (240)
||++. .+.++ .+.+++|+||-+|||..+..++||.|++|++.+ ..+++|+|.++.+
T Consensus 215 yynp~--~~i~ip~~km~lwPGy~tSIrq~E~~illctei~hKvmR-~ETvy~~m~~~~~ 271 (845)
T KOG1042|consen 215 YYDPR--AKIEIPEFKMSLWPGYETSIRQHENDILLCTEISHKVMR-TETVYDIMRSCQH 271 (845)
T ss_pred cCCCC--cccccccccceecCcchhHHHHhhhceeeehhhhhhHhh-hhHHHHHHHHHhh
Confidence 99988 46778 689999999999999999999999999999987 6899999988743
No 3
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=5.1e-26 Score=219.95 Aligned_cols=219 Identities=38% Similarity=0.549 Sum_probs=172.5
Q ss_pred CCCCCCCCCCCCCeEEEEeeeeEeEc--CCCc-EEEeeeEecCCCCchHHHH-HHHHHHHHHhhhcccCCCcceecCccc
Q 026337 2 RFPVRPGFGTVGKKCVVRANHFMVQL--AERD-IHHYDVSITPEVTSKKINR-QIISQLINLYRLTHLGERMPAYDGMKS 77 (240)
Q Consensus 2 ~~p~RP~~Gt~G~~i~l~tN~f~i~~--~~~~-iy~Y~V~i~p~~~~~~~~r-~i~~~l~~~~~~~~~~~~~~~yDG~~~ 77 (240)
..+.||+.|+.|+++.|.+|||.+.. ++.. +++|+|++.++...++..+ .+++..........++...++|||.++
T Consensus 44 ~~~~rp~~~~~g~~i~~~~n~f~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YDg~~~ 123 (876)
T KOG1041|consen 44 FPMNRPGGGTKGKKIMVLVNHFKVDLKFTEESLFVHYSVGIFNEHGRRKVQCLRFFLDKVKNPELFELKSGGPAYDGQKT 123 (876)
T ss_pred ccccCCCCCccceEEEEeeeEEEeccccCCcceEEEeeeeecCCCCchHHHHHHHHHHHHhccccccccCCcccccCCce
Confidence 35679999999999999999999876 4555 9999999999987777764 555544443222234555667999999
Q ss_pred eeecCCCCCCcc--eEEEEcCCCCCCCCCCCCCCCCceEEEEEEeecccChHHHHHHHccCCCCCchhHHHHHHHHhhcC
Q 026337 78 IYTAGPLPFESK--EFIIKLPDSDPRPSSSTRPRRERQFRVVIRLASKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAA 155 (240)
Q Consensus 78 lys~~~L~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~l~~~~~~~~~~~~~~~iq~Lniilr~~ 155 (240)
|||..+++.... ++.+..+.+ ...+.++|+++..+.+..+..++.+.....+.+++|+|++++++.
T Consensus 124 lyt~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~ 191 (876)
T KOG1041|consen 124 LYTKLELPEGVVTLDFDVISPKE------------WKKFKVSIKKVSEVVLTKLNGFIYTRGENAPRDANQTLDVVLREI 191 (876)
T ss_pred eEeccccccccceEEEEecCCCC------------CcceEEEEEecccccccCccccccCccccCchhHHHHHHHHHHhh
Confidence 999777774222 344433322 122999999999888888888888877777899999999999999
Q ss_pred CCCC-ccccccccccCCCCCcccCCCcEEEEeeeeeeeeeeCCeeEEeeeccccccccCCcHHHHHHHHhhcCCCCCC
Q 026337 156 PSEK-HTVVGRSFFSTDLGPVGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYYCRDLSRPLS 232 (240)
Q Consensus 156 ~~~~-~~~~Gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LNvD~a~~~F~~~~~l~d~i~~~~~~~~~~l~ 232 (240)
+..+ +..+|++||.........+++|.|+|.||++|+|+++|+++||+|+++++||++.+|.+++++++....++++
T Consensus 192 ~s~~~~~~~~~sff~~~~~~~~~l~~g~e~~~Gf~~s~r~~~~~~~l~id~~~~~F~k~~~~~~~l~~~~~~~~~~~~ 269 (876)
T KOG1041|consen 192 ATSQGLNNVGYSFFGNDTREPAKLGGGVEIWEGFHKSIRPTQGGLSLNIDVKTTAFYKGTPVIEFLKKILEIKTRAFH 269 (876)
T ss_pred hchhcccccchheecCCCCCccccCCCceeeeeeeeeeeeccCceEEeeeeeeeeeecCcchHHHHHhhhcCcccccc
Confidence 9966 9999999998632234458999999999999999999999999999999999999999999999754433433
No 4
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=99.84 E-value=1.8e-21 Score=124.34 Aligned_cols=52 Identities=62% Similarity=1.055 Sum_probs=42.3
Q ss_pred cccccccccCCCCCcccCCCcEEEEeeeeeeeeeeCCeeEEeeeccccccccC
Q 026337 161 TVVGRSFFSTDLGPVGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEP 213 (240)
Q Consensus 161 ~~~Gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LNvD~a~~~F~~~ 213 (240)
+.+||+||+++.. ..+|++|+|+|+||||||||++++|+||||+|+++||++
T Consensus 1 ~~vgrsFF~~~~~-~~~l~~Gle~~rG~~qSvRp~~~~l~lNvDvs~~aF~~p 52 (52)
T PF08699_consen 1 TAVGRSFFPPSGG-PVDLGGGLEAWRGFFQSVRPTQGGLLLNVDVSHTAFYKP 52 (52)
T ss_dssp EEETTEEEE-------EEETTEEEEEEEEEEEEEETTEEEEEEECCEECCC--
T ss_pred CccccccCCCCCC-CccCCCcEEEeEeEEeeeEEcCCCCEEEEeCceeeEECc
Confidence 4689999998743 378999999999999999999999999999999999975
No 5
>PF14699 hGDE_N: N-terminal domain from the human glycogen debranching enzyme
Probab=43.06 E-value=62 Score=22.58 Aligned_cols=16 Identities=19% Similarity=0.287 Sum_probs=14.4
Q ss_pred CCCCCCCCeEEEEeee
Q 026337 7 PGFGTVGKKCVVRANH 22 (240)
Q Consensus 7 P~~Gt~G~~i~l~tN~ 22 (240)
+|....||.+.|+||+
T Consensus 6 ~g~S~~~r~g~l~tN~ 21 (86)
T PF14699_consen 6 LGASLIGRNGSLWTNY 21 (86)
T ss_pred eCCcccCCceEEEEEC
Confidence 6777899999999999
No 6
>PF09261 Alpha-mann_mid: Alpha mannosidase, middle domain; InterPro: IPR015341 Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0008270 zinc ion binding; PDB: 1O7D_C 3LVT_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A 3BUQ_A ....
Probab=23.46 E-value=22 Score=24.22 Aligned_cols=10 Identities=60% Similarity=1.494 Sum_probs=6.6
Q ss_pred EEEeeeeeee
Q 026337 183 EYWRGYFQSL 192 (240)
Q Consensus 183 e~~~G~~~Sv 192 (240)
|.|+|+|+|-
T Consensus 1 e~~~G~~tSr 10 (80)
T PF09261_consen 1 EYWTGYYTSR 10 (80)
T ss_dssp EES-GGGCST
T ss_pred CCcceeeeCH
Confidence 6788888763
No 7
>PF10297 Hap4_Hap_bind: Minimal binding motif of Hap4 for binding to Hap2/3/5 ; InterPro: IPR018287 This entry represents an essential domain of the transcription activator Hap4 that allows it to associate with Hap2, Hap3 and Hap5 to form the Hap complex [, ]. In Saccharomyces cerevisiae (Baker's yeast), the haem-activated protein complex Hap2/3/4/5 plays a major role in the transcription of genes involved in respiration []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=19.16 E-value=74 Score=15.18 Aligned_cols=10 Identities=40% Similarity=0.654 Sum_probs=7.5
Q ss_pred CCCCCCCCCC
Q 026337 2 RFPVRPGFGT 11 (240)
Q Consensus 2 ~~p~RP~~Gt 11 (240)
.+|.||..|.
T Consensus 6 vlPprpkpgR 15 (17)
T PF10297_consen 6 VLPPRPKPGR 15 (17)
T ss_pred ccCCCCCCCC
Confidence 4788888774
No 8
>PF11004 Kdo_hydroxy: 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase; InterPro: IPR021266 This bacterial family of proteins has no known function.
Probab=18.61 E-value=86 Score=26.98 Aligned_cols=20 Identities=35% Similarity=0.507 Sum_probs=16.9
Q ss_pred CCCCCCCCCCCCeEEEEeeeeE
Q 026337 3 FPVRPGFGTVGKKCVVRANHFM 24 (240)
Q Consensus 3 ~p~RP~~Gt~G~~i~l~tN~f~ 24 (240)
||.||.+|. |-..|+||.=+
T Consensus 132 FPS~P~~G~--RiLRvF~NINP 151 (281)
T PF11004_consen 132 FPSRPTYGE--RILRVFTNINP 151 (281)
T ss_pred CCCCCCCCc--eeeEEeeccCC
Confidence 899999997 77899999743
No 9
>PRK15351 type III secretion system protein SsaP; Provisional
Probab=18.47 E-value=1.2e+02 Score=22.11 Aligned_cols=43 Identities=12% Similarity=0.192 Sum_probs=32.0
Q ss_pred eeeeeeeeeCCeeEEeeeccccccccCC-cHHHHHHHHhhcCCC
Q 026337 187 GYFQSLRPTQMGLSLNIDVSARSFYEPI-LVTEFVQYYCRDLSR 229 (240)
Q Consensus 187 G~~~Svr~~~~~l~LNvD~a~~~F~~~~-~l~d~i~~~~~~~~~ 229 (240)
|...-|.-..|++.|+|.|-+...|.+. .+..|+..-|+..+.
T Consensus 68 Gl~Cei~~~~g~~ql~v~Vp~~~~y~slk~~~~wL~a~Ll~aGy 111 (124)
T PRK15351 68 GVECEVCESGGLIQLRINVPHHEIYRSMKALKQWLESQLLHMGY 111 (124)
T ss_pred ceEEEEEECCCeeEEEEecchHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3444577778899999999998888764 777888776654443
No 10
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=18.45 E-value=3.4e+02 Score=20.05 Aligned_cols=44 Identities=7% Similarity=0.101 Sum_probs=29.9
Q ss_pred CCCceEEEEEEeecccChHHHHHHHccCCCC-CchhHHHHHHHHh
Q 026337 109 RRERQFRVVIRLASKPDLYTLQQFLLRRHFE-APYEVIQVLDVVL 152 (240)
Q Consensus 109 ~~~~~~~v~i~~~~~i~~~~l~~~~~~~~~~-~~~~~iq~Lniil 152 (240)
..+..|...+...+.+++.+|.+-+.+.... ...++..+|+.+.
T Consensus 14 ~~~~~y~a~~~~~~~~tl~~Ia~~i~~~~s~~t~~di~~vl~~~~ 58 (124)
T PF14848_consen 14 DAKDDYYAQVVSSGTLTLEDIAEEIAKEGSTLTRADIEAVLNALK 58 (124)
T ss_pred CCCCceEEEEEecCccCHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 3566788899999999999998877654332 3445555554443
Done!