Query 026337
Match_columns 240
No_of_seqs 130 out of 738
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 11:12:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026337.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026337hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 100.0 3E-49 1E-53 381.5 21.6 230 1-238 25-259 (861)
2 4f1n_A Kpago; argonaute, RNAI, 100.0 3.7E-40 1.3E-44 319.8 14.4 222 2-224 18-318 (1046)
3 1u04_A Argonaute, hypothetical 99.7 3.2E-18 1.1E-22 162.3 10.4 150 15-223 3-163 (771)
4 1yvu_A Hypothetical protein AQ 99.4 3.9E-13 1.3E-17 127.2 9.6 124 70-223 49-176 (706)
5 3ho1_A Argonaute; argonaute, p 97.6 0.0014 4.6E-08 61.7 14.4 170 15-223 6-186 (685)
6 3u85_B Histone-lysine N-methyl 57.5 4.5 0.00015 19.3 1.1 8 2-9 4-11 (21)
7 3kvp_A Uncharacterized protein 13.7 58 0.002 20.8 0.8 21 16-36 25-46 (72)
8 3u88_M Histone-lysine N-methyl 10.6 42 0.0014 21.2 -0.6 10 2-11 4-13 (75)
9 1odm_A Isopenicillin N synthas 10.4 1.7E+02 0.0057 24.4 2.9 23 180-203 229-253 (331)
10 1r6z_P Chimera of maltose-bind 8.6 1.6E+02 0.0054 25.9 2.2 21 204-224 375-395 (509)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=100.00 E-value=3e-49 Score=381.51 Aligned_cols=230 Identities=38% Similarity=0.656 Sum_probs=193.5
Q ss_pred CCCCCCCCCCCCCCeEEEEeeeeEeEcCCCcEEEeeeEecCCCCchHHHHHHHHHHHHHhhhcccCCCcceecCccceee
Q 026337 1 MRFPVRPGFGTVGKKCVVRANHFMVQLAERDIHHYDVSITPEVTSKKINRQIISQLINLYRLTHLGERMPAYDGMKSIYT 80 (240)
Q Consensus 1 ~~~p~RP~~Gt~G~~i~l~tN~f~i~~~~~~iy~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~~yDG~~~lys 80 (240)
+++|+|||+||.|++|+|+||||+|++++..+|||||+|.|+..+++++|++++.+++++..+.|+...+||||+++|||
T Consensus 25 ~~~p~RPg~Gt~G~~i~l~aN~F~v~~~~~~ly~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~afDG~~~l~s 104 (861)
T 4f3t_A 25 FKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYT 104 (861)
T ss_dssp CCCCBCCCCCCCSEEEEEEESEEEEECCSCEEEEEEEEEESCSCCHHHHHHHHHHHHHHSCCCCCTTCCCEECSSSEEEE
T ss_pred ccCCCCCCCCCCCcEEEEEeeeEEEECCCCceeeeeEEeCCCcCcHHHHHHHHHHHHHHhhhhhhcCceEEEcCcceEEE
Confidence 36899999999999999999999999988889999999999988899999999999887644557766789999999999
Q ss_pred cCCCCCCcceEEEEcCCCCCCCCCCCCCCCCceEEEEEEeecccChHHHHHHHccCCCCCchhHHHHHHHHhhcCCCCCc
Q 026337 81 AGPLPFESKEFIIKLPDSDPRPSSSTRPRRERQFRVVIRLASKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPSEKH 160 (240)
Q Consensus 81 ~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~l~~~~~~~~~~~~~~~iq~Lniilr~~~~~~~ 160 (240)
+.+||.+....++.+....+ .+++.|+|+|++++++++++|.+|++|.....++++||+||||+|+.++.++
T Consensus 105 ~~~L~~~~~~~~~~v~~~~~--------~~~~~~~V~I~~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~~~~~~ 176 (861)
T 4f3t_A 105 AMPLPIGRDKVELEVTLPGE--------GKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRY 176 (861)
T ss_dssp SSCCSCSSCEEEEECCC---------------CEEEEEEEEEEEEHHHHHHHHHTCSSSCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCcCCCCCcceEEEEecCCC--------CCCcEEEEEEEEeeecCHHHHHHHhcCCCCCCcHHHHHHHHHHHHhhccccc
Confidence 99999754333343322111 3567899999999999999999999999888889999999999999888889
Q ss_pred cccccccccCCCCCcccCCCcEEEEeeeeeeeeeeCCeeEEeeeccccccccCCcHHHHHHHHhhc-----CCCCCChhh
Q 026337 161 TVVGRSFFSTDLGPVGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYYCRD-----LSRPLSDQV 235 (240)
Q Consensus 161 ~~~Gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LNvD~a~~~F~~~~~l~d~i~~~~~~-----~~~~l~~~~ 235 (240)
..+||+||++..+...++|+|+|+|+||++||||++++|+||+|++|++|++++||+|+|.++++. ..++|++++
T Consensus 177 ~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~ 256 (861)
T 4f3t_A 177 TPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQ 256 (861)
T ss_dssp EEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCEEHHHHHHHHHTCSSCC---CCCCHHH
T ss_pred cccCCCccCCCCCceeccCCCEEEEeceeEEEEecCCccEEeecccceeEeeCCcHHHHHHHHhcccchhhhccccCHHH
Confidence 999999998764445688999999999999999999999999999999999999999999998632 245688777
Q ss_pred hhc
Q 026337 236 RLK 238 (240)
Q Consensus 236 ~~~ 238 (240)
+.+
T Consensus 257 ~~~ 259 (861)
T 4f3t_A 257 RVK 259 (861)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 2
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=3.7e-40 Score=319.80 Aligned_cols=222 Identities=18% Similarity=0.196 Sum_probs=168.3
Q ss_pred CCCCCCCCCCCCCeEEEEeeeeEeEcCCC---------------------cEEEeeeEecCCCC--------------ch
Q 026337 2 RFPVRPGFGTVGKKCVVRANHFMVQLAER---------------------DIHHYDVSITPEVT--------------SK 46 (240)
Q Consensus 2 ~~p~RP~~Gt~G~~i~l~tN~f~i~~~~~---------------------~iy~Y~V~i~p~~~--------------~~ 46 (240)
.+|.||+|||.|++|.|+||||.+.+.+. .||+|+|+|.|+.. ++
T Consensus 18 ~~p~Rp~yGt~G~~v~l~aN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~~~~~~~~~~~~~~~~~~~~~ 97 (1046)
T 4f1n_A 18 KVENRHDYGTKGTKVDILTNHILLAVGNDVPTEKIDKELVPKLDGWWKTAFIFTYHIDFKPQQKGPPRRGKPVPPQELSK 97 (1046)
T ss_dssp CCCBCCCCCCCSEEEEEEESEEEEECCTTSCTTTSCTTTSCCCCSTTTSCEEEEEEEEEC-----------------CCH
T ss_pred cCCCCCCCCCCCcEEEEEeeEEEEecCCCccccccccccccccccccccceEEEEEEEEcccccccccccccCcccccch
Confidence 68999999999999999999999998644 89999999998643 24
Q ss_pred HHHHHHHHHHHHHhh-hcccCCCcceecCccceeecCCCC---CCcceEEEEcC-----CCCCCC--------CCCCCCC
Q 026337 47 KINRQIISQLINLYR-LTHLGERMPAYDGMKSIYTAGPLP---FESKEFIIKLP-----DSDPRP--------SSSTRPR 109 (240)
Q Consensus 47 ~~~r~i~~~l~~~~~-~~~~~~~~~~yDG~~~lys~~~L~---~~~~~~~v~~~-----~~~~~~--------~~~~~~~ 109 (240)
+++++||+.++++.. ...++ ..+||||+++|||..+|| .....+.|++. ++.++. .+.....
T Consensus 98 ~k~~~ii~~ll~e~~~~~~~~-~~ia~d~~~~L~s~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (1046)
T 4f1n_A 98 PKKYELIEALLDEDEILYKYR-DRIAFNGEDTIYSHVPLEEFTLFDGCWEVSNKQKKKVVPGMGAPSNKASLQKKIDPEL 176 (1046)
T ss_dssp HHHHHHHHHHHHSCTTTGGGT-TSEEECSSSEEEESSCGGGSTTCTTCCC------------------------------
T ss_pred hHHHHHHHHHHHhcchhhhcC-CceeecCccceEECCcCCccccCCCceEEeccccccccCCcccccccccccccccccc
Confidence 567789998887621 01244 469999999999999999 44446777766 322210 0011124
Q ss_pred CCceEEEEEEeecccChHHHHHHHccCCCCC-----chhHHHHHHHHhhcCCCCC---ccccccc-cccCCC-CCcccCC
Q 026337 110 RERQFRVVIRLASKPDLYTLQQFLLRRHFEA-----PYEVIQVLDVVLRAAPSEK---HTVVGRS-FFSTDL-GPVGQLG 179 (240)
Q Consensus 110 ~~~~~~v~i~~~~~i~~~~l~~~~~~~~~~~-----~~~~iq~Lniilr~~~~~~---~~~~Gr~-ff~~~~-~~~~~l~ 179 (240)
+++.|+|+|+++++|++++|.+|+.|.+... +.+++++||+||.+.+... ...+|++ ||..+. +...+||
T Consensus 177 ~~~~~~V~i~~~~~i~l~dL~~~l~~~~~~~~~~~~~~~~i~aL~~il~~~~~~~~~~i~~vg~nkFF~~~~~~~~~~Lg 256 (1046)
T 4f1n_A 177 EEMVSQITLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSLLGAKFMSTDDLIFQVQGNKFFIFNNFAKAIPFQ 256 (1046)
T ss_dssp -CGGGGEEEEEEEEEEGGGGGSCSSCCCTTHHHHHHTCHHHHHHHHHHHHHHHCSSSCEEEETTTEEEECSTTCCEEECS
T ss_pred cCceEEEEEEEeeecCHHHHHHHHcCCCccccccccchHHHHHHHHHHhhhhhhcCCceEEcCCcccccCCCCCccccCC
Confidence 6788999999999999999999999997642 2678999999999988643 2556655 886542 2568999
Q ss_pred CcEEEEeeeeeeeeeeCCeeEEeeeccccccccC-----------------CcHHHHHHHHh
Q 026337 180 DGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEP-----------------ILVTEFVQYYC 224 (240)
Q Consensus 180 ~gle~~~G~~~Svr~~~~~l~LNvD~a~~~F~~~-----------------~~l~d~i~~~~ 224 (240)
+|+|+|+|||+||||++|+|+||||+++++||++ ++|+|+|.+++
T Consensus 257 ~Gle~wrGffqSvRpa~~rLlLNvdvs~~aF~k~~~~~~~~~~~~~~~~~p~~lid~l~~~~ 318 (1046)
T 4f1n_A 257 IGGYLLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGDPRFKNNEKEQFTLMDWIIECY 318 (1046)
T ss_dssp SSEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCSSSCTTSHHHHHCTTCCCCHHHHHHHHH
T ss_pred CcEEEEEeEeeeEEecCCceEEEEeccceeEEeccccCcccccccccccCCccHHHHHHHHh
Confidence 9999999999999999999999999999999985 79999999985
No 3
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=99.74 E-value=3.2e-18 Score=162.28 Aligned_cols=150 Identities=14% Similarity=-0.007 Sum_probs=112.2
Q ss_pred eEEEEeeeeEeEc---CCCcEEEeeeEecCCCCchHHHHHHHHHHHHHhhhcccCCCcceecCccc--eeecCCCCCCcc
Q 026337 15 KCVVRANHFMVQL---AERDIHHYDVSITPEVTSKKINRQIISQLINLYRLTHLGERMPAYDGMKS--IYTAGPLPFESK 89 (240)
Q Consensus 15 ~i~l~tN~f~i~~---~~~~iy~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~~yDG~~~--lys~~~L~~~~~ 89 (240)
++.+.+|||+|.. |+ .+|+|+|++.|+.+.+ ++..++... . ..+| .++|||. . ||++++|+-
T Consensus 3 ~~~~~~n~~~~~~~~~~~-~~y~y~v~~~p~~~~~-~~~~~~~~~----~-~~~g--~~~fdg~-~~~l~~~~~l~~--- 69 (771)
T 1u04_A 3 KAIVVINLVKINKKIIPD-KIYVYRLFNDPEEELQ-KEGYSIYRL----A-YENV--GIVIDPE-NLIIATTKELEY--- 69 (771)
T ss_dssp EEEEEBSEEEBCGGGSCS-CEEEEEC-------------CCHHHH----H-HHTT--EEEEETT-TTEEEESSCCCC---
T ss_pred ceEEEeeeEEEecccCCC-eeEEEEeecCChHHHH-HHHHHHHHH----H-hhcC--cEEecCc-ceeeeccceecc---
Confidence 5789999999987 45 9999999999998766 544444322 2 2455 6899996 5 999999871
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCceEEEEEEeecccChHHHHHHHccCCCCCchhHHHHHHHHhhcCCC-CC-----cccc
Q 026337 90 EFIIKLPDSDPRPSSSTRPRRERQFRVVIRLASKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPS-EK-----HTVV 163 (240)
Q Consensus 90 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~l~~~~~~~~~~~~~~~iq~Lniilr~~~~-~~-----~~~~ 163 (240)
++..+.|+++.++++. +|++|+|+|+.+. ++ +..+
T Consensus 70 --------------------~~~~~~~~~~~~~~~~-------------------~~~~n~i~r~~l~~~~~~~~~l~~~ 110 (771)
T 1u04_A 70 --------------------EGEFIPEGEISFSELR-------------------NDYQSKLVLRLLKENGIGEYELSKL 110 (771)
T ss_dssp --------------------SSCCEEEEEECGGGSC-------------------HHHHHHHHHHHHHHTTCSHHHHHHH
T ss_pred --------------------CCCeEEEEEEEcceec-------------------HHHHHHHHHHHHHHcccchHHHHHH
Confidence 2235888888888763 7899999999987 56 8899
Q ss_pred ccccccCCCCCcccCCCcEEEEeeeeeeeeeeCCeeEEeeeccccccccCCcHHHHHHHH
Q 026337 164 GRSFFSTDLGPVGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILVTEFVQYY 223 (240)
Q Consensus 164 Gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LNvD~a~~~F~~~~~l~d~i~~~ 223 (240)
||+||++ .++ +.+++|+|+-+||+..+++++||+|++|++.+ .+||+|+|.++
T Consensus 111 ~r~~~~~-----~~~-~~~~~~~~~~tsi~~~e~~~ll~~di~hkv~r-~~t~~d~~~~~ 163 (771)
T 1u04_A 111 LRKFRKP-----KTF-GDYKVIPSVEMSVIKHDEDFYLVIHIIHQIQS-MKTLWELVNKD 163 (771)
T ss_dssp HTTTSCC-----EEE-TTEEEEEEEEEEEEECSSCEEEEEEEEEEEEE-SSCHHHHTTTC
T ss_pred hhhcCCC-----ccc-cccEEEECceeeEEecCCceEEEEEeeeeEee-hhHHHHHHHHH
Confidence 9999976 233 46899999999999999999999999999987 68999998775
No 4
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=99.42 E-value=3.9e-13 Score=127.19 Aligned_cols=124 Identities=10% Similarity=0.134 Sum_probs=93.2
Q ss_pred ceecCccceeecCCCCCCcceEEEEcCCCCCCCCCCCCCCCCceEEEEEEeecccChHHHHHHHccCCCCCchhHHHHHH
Q 026337 70 PAYDGMKSIYTAGPLPFESKEFIIKLPDSDPRPSSSTRPRRERQFRVVIRLASKPDLYTLQQFLLRRHFEAPYEVIQVLD 149 (240)
Q Consensus 70 ~~yDG~~~lys~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~l~~~~~~~~~~~~~~~iq~Ln 149 (240)
..|.-....|...+.+.+.. -.+.. ++. .|+|++++++..- .-..+++++|+++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~--~~~~~-------------~~~--~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 102 (706)
T 1yvu_A 49 PTFRREDEFWCAGKVEKDTL--YLTLS-------------NGE--IVELKRVGEEEFR---------GFQNERECQELFR 102 (706)
T ss_dssp CEEEETTEEEESSCCTTCCC--EEEEC-------------SSS--CEEEEECCCEECC---------CCSCHHHHHHHHH
T ss_pred ccccccccceeccccccceE--EEEcC-------------CCC--EEEEEEEEEeecc---------CCCCCHHHHHHHH
Confidence 34555567888888775432 33322 122 5669999987610 0013578999999
Q ss_pred HHhhcCCCCCccccccccccCCCCCcccC---CCcEEEEeeeeeeeeeeC-CeeEEeeeccccccccCCcHHHHHHHH
Q 026337 150 VVLRAAPSEKHTVVGRSFFSTDLGPVGQL---GDGVEYWRGYFQSLRPTQ-MGLSLNIDVSARSFYEPILVTEFVQYY 223 (240)
Q Consensus 150 iilr~~~~~~~~~~Gr~ff~~~~~~~~~l---~~gle~~~G~~~Svr~~~-~~l~LNvD~a~~~F~~~~~l~d~i~~~ 223 (240)
+++++. .+++..+||+||++. .+..+ .++||+|+||.+||+..+ ++++||+|++|+ |.+..||+|+|.++
T Consensus 103 ~~~~~~-~l~~~~igr~~~~~~--~~~~i~~~~~~l~iwPG~~tsi~~~e~~~~~L~~DvshK-vlr~~Tvld~l~~~ 176 (706)
T 1yvu_A 103 DFLTKT-KVKDKFISDFYKKFR--DKITVQGKNRKIALIPEVNEKVLKSEEGYFLLHLDLKFR-IQPFETLQTLLERN 176 (706)
T ss_dssp HHHHHT-CHHHHHHHHHHHHHH--HHHEEECSSCEEEEEEEEEEEEEEBSSSCEEEEEEEEEE-EEESSCHHHHHHHC
T ss_pred HHHHHc-CChHhhhCccccCcc--ccccccCCCCcEEEccCeEEEEEeccCCCeEEEEEeeee-ecccchHHHHHHHh
Confidence 999988 556668999999877 35566 578999999999999999 999999999999 55689999999884
No 5
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=97.58 E-value=0.0014 Score=61.70 Aligned_cols=170 Identities=16% Similarity=0.130 Sum_probs=105.8
Q ss_pred eEEEEeeeeEeEc-C--CCcEEEeeeEecCCCCchHHHHHHHHHHHHHhhhcccCCCcceecCccceeecCCCCCC-cce
Q 026337 15 KCVVRANHFMVQL-A--ERDIHHYDVSITPEVTSKKINRQIISQLINLYRLTHLGERMPAYDGMKSIYTAGPLPFE-SKE 90 (240)
Q Consensus 15 ~i~l~tN~f~i~~-~--~~~iy~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~~yDG~~~lys~~~L~~~-~~~ 90 (240)
.+.|.-|-|.++- . +.+.|.|++.+.|.+...+..+ ++..+..+ .|. .|---.+.|.|+.+ |.. ..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~--~~~~~~~~~~~~~~-~~~~~~~ 76 (685)
T 3ho1_A 6 KTEVFLNRFALRPLNPEELRPWRLEVVLDPPPGREEVYP-LLAQVARR-----AGG--VTVRMGDGLASWSP-PEVLVLE 76 (685)
T ss_dssp CEEEEEEEEEEEECCTTTSSCEEEEEEEESCCCTTTHHH-HHHHHHHH-----TCS--SEEEETTEEEESSC-TTTSCCE
T ss_pred ceeEEEeeeecccCChhhCceeEEEEecCCCCCcchHHH-HHHHHHHH-----hCC--eEEeecCceecccC-chhhhcc
Confidence 5789999999974 3 7899999999998765444433 44433322 232 33333367888877 532 122
Q ss_pred EEEEcCCCCCCCCCCCCCCCCceEEEEEEeecccChHHHHHHHccCCCCCchhHHHHHHHHhhcCCC------CCccccc
Q 026337 91 FIIKLPDSDPRPSSSTRPRRERQFRVVIRLASKPDLYTLQQFLLRRHFEAPYEVIQVLDVVLRAAPS------EKHTVVG 164 (240)
Q Consensus 91 ~~v~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~l~~~~~~~~~~~~~~~iq~Lniilr~~~~------~~~~~~G 164 (240)
-.|. . .+....|++.-.=.+.+++. ....-+||+.+-|.... .+...-|
T Consensus 77 ~~~~--~----------~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (685)
T 3ho1_A 77 GTLA--R----------MGQTYAYRLYPKGRRPLDPK-------------DPGERSVLSALARRLLQERLRRLEGVWVEG 131 (685)
T ss_dssp EEEE--C----------SSCEEEEEEEEEEECCCCTT-------------SHHHHHHHHHHHHHHHHHHHHTCSSSEEET
T ss_pred chhc--c----------ccCCcceeeeecccccCCCC-------------ChHHHHHHHHHHHHHHHHHHHhhhceEEcc
Confidence 2332 1 02334466655555666653 23344555554444332 1222223
Q ss_pred cccccCCCCCcccCCCcEEEEeeeeeeeeeeC-CeeEEeeeccccccccCCcHHHHHHHH
Q 026337 165 RSFFSTDLGPVGQLGDGVEYWRGYFQSLRPTQ-MGLSLNIDVSARSFYEPILVTEFVQYY 223 (240)
Q Consensus 165 r~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~-~~l~LNvD~a~~~F~~~~~l~d~i~~~ 223 (240)
.-.+-.. . .-|.|.|+.+|+--.|-++. ++++|.||.+|. |+...++.+|+.+.
T Consensus 132 ~~~~~~~---~-~~~~~~~~~~g~~~~v~~~~~~~~~l~vd~~~r-~~~~~~~~~~l~~~ 186 (685)
T 3ho1_A 132 LAVYRRE---H-ARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYR-ILCEMSLEAWLAQG 186 (685)
T ss_dssp TEEEEEE---E-EEETTEEEEEEEEEEEEECSSSEEEEEEEEEEE-EEECSCHHHHHHHS
T ss_pred EEEEeec---C-CCCCceEEecceEEEEEECCCCcEEEEEeehee-ecChhhHHHHHHhC
Confidence 3333211 1 12889999999999999997 899999999997 66789999999883
No 6
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=57.50 E-value=4.5 Score=19.34 Aligned_cols=8 Identities=75% Similarity=1.501 Sum_probs=6.7
Q ss_pred CCCCCCCC
Q 026337 2 RFPVRPGF 9 (240)
Q Consensus 2 ~~p~RP~~ 9 (240)
.||.||+-
T Consensus 4 rfparpg~ 11 (21)
T 3u85_B 4 RFPARPGT 11 (26)
T ss_pred ccccCCCc
Confidence 68999993
No 7
>3kvp_A Uncharacterized protein YMZC; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus subtilis}
Probab=13.73 E-value=58 Score=20.84 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=17.2
Q ss_pred EEEEeeeeEeEcC-CCcEEEee
Q 026337 16 CVVRANHFMVQLA-ERDIHHYD 36 (240)
Q Consensus 16 i~l~tN~f~i~~~-~~~iy~Y~ 36 (240)
++|--|+|.+.-. ...||+||
T Consensus 25 vqLe~nhFgv~e~g~iKIykyd 46 (72)
T 3kvp_A 25 FPLEHNHFGVMEDGYIKIYEYN 46 (72)
T ss_dssp EECSTTEEEEEETTEEEEEEEE
T ss_pred eeecCCEEEEEeCCEEEEEEeC
Confidence 7888899998764 46899997
No 8
>3u88_M Histone-lysine N-methyltransferase MLL; menin, MEN1, MLL, JUND, ledgf, TPR, transcription; HET: CHD 0BR GGB; 3.00A {Homo sapiens}
Probab=10.63 E-value=42 Score=21.16 Aligned_cols=10 Identities=70% Similarity=1.414 Sum_probs=8.1
Q ss_pred CCCCCCCCCC
Q 026337 2 RFPVRPGFGT 11 (240)
Q Consensus 2 ~~p~RP~~Gt 11 (240)
.||.||+.|.
T Consensus 4 rfparpgtgr 13 (75)
T 3u88_M 4 RFPARPGTGR 13 (75)
T ss_dssp CCTTCCCCSH
T ss_pred ccCCCCCCCc
Confidence 6899999775
No 9
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ...
Probab=10.40 E-value=1.7e+02 Score=24.39 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=20.3
Q ss_pred CcEEEE--eeeeeeeeeeCCeeEEee
Q 026337 180 DGVEYW--RGYFQSLRPTQMGLSLNI 203 (240)
Q Consensus 180 ~gle~~--~G~~~Svr~~~~~l~LNv 203 (240)
+|||++ .| ...|.|..+.+.+|+
T Consensus 229 ~GLQV~~~~g-Wi~V~p~pgalvVNi 253 (331)
T 1odm_A 229 QNLQVETAAG-YQDIEADDTGYLINC 253 (331)
T ss_dssp CCEEEEETTE-EEECCCCTTSEEEEE
T ss_pred CCEEEEcCCC-eEECCCCCCeEEEEc
Confidence 799998 48 999999999899887
No 10
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=8.62 E-value=1.6e+02 Score=25.87 Aligned_cols=21 Identities=24% Similarity=0.516 Sum_probs=17.6
Q ss_pred eccccccccCCcHHHHHHHHh
Q 026337 204 DVSARSFYEPILVTEFVQYYC 224 (240)
Q Consensus 204 D~a~~~F~~~~~l~d~i~~~~ 224 (240)
+...+.|++++||+|++.+++
T Consensus 375 ~~~~~~~~~~~p~~~~~~~~~ 395 (509)
T 1r6z_P 375 DISHKSFPISMPMIEYLERFS 395 (509)
T ss_dssp CSSCCCSSCEEEHHHHHHHHT
T ss_pred hhhhhccCCCccHHHHHHHHh
Confidence 344668999999999999986
Done!