Query 026338
Match_columns 240
No_of_seqs 118 out of 164
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 06:45:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026338.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026338hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11935 DUF3453: Domain of un 100.0 1.9E-38 4E-43 279.1 9.0 138 91-240 1-138 (239)
2 KOG1895 mRNA cleavage and poly 99.8 5.5E-20 1.2E-24 184.8 14.6 180 28-230 2-181 (957)
3 PF05918 API5: Apoptosis inhib 96.7 0.0094 2E-07 58.7 9.4 115 38-174 51-165 (556)
4 PRK09687 putative lyase; Provi 96.4 0.2 4.4E-06 45.2 15.3 119 45-168 89-218 (280)
5 PF01602 Adaptin_N: Adaptin N 96.2 0.087 1.9E-06 50.4 12.8 98 10-110 81-179 (526)
6 PF01602 Adaptin_N: Adaptin N 95.9 0.16 3.4E-06 48.6 13.1 139 6-169 6-179 (526)
7 COG5096 Vesicle coat complex, 95.9 0.14 3.1E-06 52.1 12.9 106 7-113 88-196 (757)
8 COG5096 Vesicle coat complex, 95.5 0.12 2.5E-06 52.8 10.6 94 18-113 29-157 (757)
9 PF10363 DUF2435: Protein of u 95.5 0.13 2.8E-06 39.0 8.3 77 47-123 4-87 (92)
10 PTZ00429 beta-adaptin; Provisi 95.1 0.58 1.3E-05 47.9 14.4 128 19-169 43-206 (746)
11 PF13646 HEAT_2: HEAT repeats; 94.7 0.075 1.6E-06 38.3 5.1 56 49-110 2-58 (88)
12 PTZ00429 beta-adaptin; Provisi 94.5 0.47 1E-05 48.6 11.9 73 39-111 133-207 (746)
13 KOG1058 Vesicle coat complex C 94.5 0.22 4.7E-06 50.6 9.0 99 13-113 25-164 (948)
14 PF12348 CLASP_N: CLASP N term 94.4 0.47 1E-05 40.5 10.1 186 9-225 8-209 (228)
15 PF12530 DUF3730: Protein of u 94.2 3.5 7.6E-05 36.1 16.0 112 9-122 39-161 (234)
16 PF12755 Vac14_Fab1_bd: Vacuol 94.0 0.38 8.2E-06 36.7 7.7 62 42-103 23-88 (97)
17 PF12717 Cnd1: non-SMC mitotic 94.0 0.52 1.1E-05 39.4 9.2 86 24-110 4-90 (178)
18 PF13646 HEAT_2: HEAT repeats; 93.8 0.6 1.3E-05 33.4 8.2 83 12-107 4-87 (88)
19 PF12830 Nipped-B_C: Sister ch 93.5 0.26 5.7E-06 41.7 6.7 70 42-111 4-73 (187)
20 PF12717 Cnd1: non-SMC mitotic 92.9 4.2 9.1E-05 33.9 13.1 131 7-148 24-157 (178)
21 PF02985 HEAT: HEAT repeat; I 92.3 0.29 6.3E-06 29.1 3.9 29 84-112 1-29 (31)
22 cd00020 ARM Armadillo/beta-cat 92.3 1.8 3.8E-05 32.1 9.2 91 20-110 19-118 (120)
23 PF13513 HEAT_EZ: HEAT-like re 92.2 0.43 9.3E-06 31.7 5.1 50 61-110 2-55 (55)
24 cd00020 ARM Armadillo/beta-cat 92.1 0.5 1.1E-05 35.2 5.9 65 47-111 8-77 (120)
25 PF10508 Proteasom_PSMB: Prote 91.0 8.9 0.00019 37.4 14.7 146 6-171 75-231 (503)
26 PRK09687 putative lyase; Provi 90.8 1.6 3.5E-05 39.3 8.8 98 6-110 88-186 (280)
27 KOG1060 Vesicle coat complex A 90.0 4.8 0.0001 41.5 11.9 103 40-143 137-239 (968)
28 PF12348 CLASP_N: CLASP N term 89.6 12 0.00025 31.8 13.0 84 29-114 115-208 (228)
29 KOG2956 CLIP-associating prote 89.1 15 0.00033 35.8 14.1 111 5-115 284-403 (516)
30 KOG2011 Sister chromatid cohes 87.7 6.1 0.00013 41.9 11.3 131 25-176 262-401 (1048)
31 PF02985 HEAT: HEAT repeat; I 87.6 0.95 2.1E-05 26.8 3.3 29 47-75 1-29 (31)
32 PF10274 ParcG: Parkin co-regu 86.1 4.1 9E-05 34.8 7.7 70 41-110 37-107 (183)
33 KOG1525 Sister chromatid cohes 85.2 1.2 2.6E-05 48.1 4.8 126 21-159 313-441 (1266)
34 PF05918 API5: Apoptosis inhib 85.1 7.8 0.00017 38.5 10.1 132 26-167 2-140 (556)
35 PF12755 Vac14_Fab1_bd: Vacuol 84.8 14 0.0003 28.0 9.4 73 77-168 21-93 (97)
36 PF10521 DUF2454: Protein of u 83.0 16 0.00034 32.8 10.5 97 43-151 116-230 (282)
37 KOG1060 Vesicle coat complex A 82.6 7.5 0.00016 40.1 8.9 102 6-113 37-173 (968)
38 KOG1061 Vesicle coat complex A 82.6 10 0.00022 38.7 9.9 133 32-173 107-270 (734)
39 KOG1020 Sister chromatid cohes 82.5 12 0.00027 41.1 10.8 83 27-109 866-957 (1692)
40 PRK13800 putative oxidoreducta 82.3 18 0.0004 37.8 12.0 51 54-110 815-865 (897)
41 PF10508 Proteasom_PSMB: Prote 81.2 56 0.0012 31.8 15.6 112 10-123 121-244 (503)
42 KOG1248 Uncharacterized conser 80.2 74 0.0016 34.4 15.3 147 10-174 699-859 (1176)
43 PF12765 Cohesin_HEAT: HEAT re 80.1 1.9 4.1E-05 27.8 2.5 35 36-70 6-42 (42)
44 KOG1059 Vesicle coat complex A 79.7 6.4 0.00014 40.2 7.2 80 40-119 138-228 (877)
45 PF00514 Arm: Armadillo/beta-c 78.2 3.9 8.5E-05 25.4 3.6 28 83-110 12-39 (41)
46 KOG2023 Nuclear transport rece 77.1 15 0.00033 37.4 8.9 72 42-113 170-245 (885)
47 KOG1058 Vesicle coat complex C 76.0 67 0.0015 33.4 13.1 149 10-166 173-341 (948)
48 PRK13800 putative oxidoreducta 75.9 31 0.00067 36.1 11.4 84 15-110 628-711 (897)
49 KOG2229 Protein required for a 74.4 72 0.0016 31.7 12.4 106 6-112 18-129 (616)
50 KOG1062 Vesicle coat complex A 73.5 6.6 0.00014 40.4 5.5 74 77-172 136-209 (866)
51 KOG0915 Uncharacterized conser 71.1 64 0.0014 36.0 12.2 123 43-172 1127-1266(1702)
52 KOG2149 Uncharacterized conser 70.9 78 0.0017 30.2 11.6 126 10-150 61-195 (393)
53 COG5218 YCG1 Chromosome conden 70.5 1.2E+02 0.0027 30.9 13.2 145 4-168 8-158 (885)
54 PF12830 Nipped-B_C: Sister ch 70.2 38 0.00083 28.4 8.8 64 16-82 16-81 (187)
55 KOG1525 Sister chromatid cohes 68.9 42 0.00092 36.7 10.5 110 45-172 221-330 (1266)
56 KOG1895 mRNA cleavage and poly 67.5 3.5 7.6E-05 43.3 2.2 102 121-225 10-112 (957)
57 PF09324 DUF1981: Domain of un 65.7 28 0.00061 25.6 6.3 64 45-108 16-84 (86)
58 PF08167 RIX1: rRNA processing 64.8 58 0.0013 26.8 8.6 121 41-174 20-146 (165)
59 PF04118 Dopey_N: Dopey, N-ter 63.3 76 0.0017 29.2 9.8 101 45-170 96-200 (307)
60 PF04826 Arm_2: Armadillo-like 59.3 1.2E+02 0.0027 26.9 10.2 136 20-159 107-250 (254)
61 smart00185 ARM Armadillo/beta- 57.7 15 0.00032 22.0 3.0 27 84-110 13-39 (41)
62 PF07571 DUF1546: Protein of u 57.2 79 0.0017 23.6 7.5 60 57-116 17-82 (92)
63 PF13001 Ecm29: Proteasome sta 56.8 89 0.0019 30.5 9.7 94 59-169 387-486 (501)
64 KOG1020 Sister chromatid cohes 55.5 1.5E+02 0.0033 33.2 11.6 92 19-111 827-920 (1692)
65 KOG2259 Uncharacterized conser 55.3 43 0.00094 34.2 7.1 149 57-231 384-539 (823)
66 KOG2023 Nuclear transport rece 54.8 59 0.0013 33.4 8.0 77 25-101 191-274 (885)
67 KOG2549 Transcription initiati 54.6 2E+02 0.0044 28.8 11.5 144 20-174 259-425 (576)
68 KOG2032 Uncharacterized conser 54.1 2.1E+02 0.0045 28.4 11.3 115 42-176 254-376 (533)
69 KOG0168 Putative ubiquitin fus 50.8 30 0.00065 36.3 5.4 84 24-107 528-624 (1051)
70 PF04510 DUF577: Family of unk 50.3 1.1E+02 0.0025 25.9 7.9 70 43-112 81-164 (174)
71 PF12719 Cnd3: Nuclear condens 49.9 98 0.0021 27.8 8.2 64 44-107 24-88 (298)
72 cd09246 BRO1_Alix_like_1 Prote 49.8 1.8E+02 0.004 27.0 10.2 102 57-169 164-276 (353)
73 PF12335 SBF2: Myotubularin pr 49.0 1.5E+02 0.0032 26.1 8.9 92 20-113 18-118 (225)
74 PF11698 V-ATPase_H_C: V-ATPas 48.3 1.1E+02 0.0025 24.2 7.3 31 140-171 85-115 (119)
75 cd09241 BRO1_ScRim20-like Prot 47.4 1.4E+02 0.0031 27.7 9.1 99 58-169 158-266 (355)
76 KOG0212 Uncharacterized conser 45.6 2.2E+02 0.0047 28.8 10.2 105 11-116 339-457 (675)
77 PF11935 DUF3453: Domain of un 44.1 2.2E+02 0.0048 24.9 9.3 43 73-115 143-189 (239)
78 TIGR02270 conserved hypothetic 43.9 1.7E+02 0.0037 28.0 9.1 16 92-107 156-171 (410)
79 PF07540 NOC3p: Nucleolar comp 42.9 1.2E+02 0.0025 23.1 6.4 52 63-115 5-57 (95)
80 KOG0212 Uncharacterized conser 42.7 1.4E+02 0.003 30.1 8.4 70 32-101 152-226 (675)
81 KOG1059 Vesicle coat complex A 42.0 97 0.0021 32.1 7.3 128 20-170 193-364 (877)
82 PF09424 YqeY: Yqey-like prote 41.7 89 0.0019 25.4 6.0 48 42-94 81-128 (143)
83 KOG3723 PH domain protein Melt 41.6 2.6E+02 0.0057 28.4 10.0 96 20-115 170-273 (851)
84 PF14664 RICTOR_N: Rapamycin-i 41.4 2.2E+02 0.0047 26.8 9.3 60 21-80 81-142 (371)
85 KOG1824 TATA-binding protein-i 40.5 2.3E+02 0.0051 30.5 9.9 117 43-176 648-770 (1233)
86 PF13720 Acetyltransf_11: Udp 40.2 1.4E+02 0.003 21.9 6.3 48 22-72 29-76 (83)
87 KOG1062 Vesicle coat complex A 40.2 61 0.0013 33.7 5.7 71 40-110 136-206 (866)
88 PF11099 M11L: Apoptosis regul 39.3 30 0.00066 29.1 2.9 57 108-172 39-95 (167)
89 cd09244 BRO1_Rhophilin Protein 38.3 2.4E+02 0.0053 26.4 9.1 83 54-148 152-243 (350)
90 KOG2160 Armadillo/beta-catenin 37.7 3E+02 0.0066 25.8 9.4 94 19-112 94-196 (342)
91 PF05055 DUF677: Protein of un 37.6 3.5E+02 0.0075 25.3 12.9 105 7-120 13-131 (336)
92 COG5537 IRR1 Cohesin [Cell div 37.4 4.2E+02 0.0091 27.2 10.7 122 36-174 260-389 (740)
93 KOG2171 Karyopherin (importin) 36.7 5.9E+02 0.013 27.7 13.6 22 152-174 170-191 (1075)
94 KOG0413 Uncharacterized conser 36.0 54 0.0012 35.2 4.5 80 33-113 956-1036(1529)
95 KOG1242 Protein containing ada 35.7 1.2E+02 0.0025 30.5 6.7 66 43-109 255-321 (569)
96 PF01603 B56: Protein phosphat 35.1 3.3E+02 0.0071 25.8 9.6 80 27-108 236-322 (409)
97 KOG0168 Putative ubiquitin fus 35.1 5.9E+02 0.013 27.2 12.2 101 1-101 161-292 (1051)
98 PF09280 XPC-binding: XPC-bind 34.8 72 0.0016 22.1 3.8 34 28-66 9-42 (59)
99 PF12530 DUF3730: Protein of u 34.7 3E+02 0.0066 23.8 14.3 141 11-170 4-150 (234)
100 KOG1061 Vesicle coat complex A 34.4 85 0.0018 32.3 5.6 55 40-95 344-398 (734)
101 KOG0211 Protein phosphatase 2A 34.2 1.9E+02 0.0041 30.1 8.2 87 24-110 573-662 (759)
102 KOG3961 Uncharacterized conser 34.1 1.1E+02 0.0024 27.2 5.6 69 42-110 114-182 (262)
103 PLN03200 cellulose synthase-in 33.9 3.4E+02 0.0074 31.7 10.6 108 4-115 10-128 (2102)
104 smart00544 MA3 Domain in DAP-5 33.8 2E+02 0.0043 21.4 9.1 66 6-77 2-67 (113)
105 KOG4653 Uncharacterized conser 33.8 89 0.0019 32.9 5.7 126 46-181 727-860 (982)
106 KOG1848 Uncharacterized conser 33.5 5E+02 0.011 29.2 11.2 110 53-174 1004-1135(1610)
107 KOG1242 Protein containing ada 33.4 1.6E+02 0.0034 29.6 7.2 90 24-114 270-403 (569)
108 KOG1824 TATA-binding protein-i 33.2 4.8E+02 0.01 28.3 10.7 111 4-115 127-245 (1233)
109 PF12726 SEN1_N: SEN1 N termin 32.5 5.6E+02 0.012 26.2 13.7 47 29-75 102-149 (727)
110 KOG0166 Karyopherin (importin) 31.8 4.1E+02 0.0089 26.4 9.7 101 10-110 68-179 (514)
111 COG5218 YCG1 Chromosome conden 31.7 3.1E+02 0.0066 28.2 8.8 86 24-109 66-158 (885)
112 KOG1240 Protein kinase contain 31.1 2.7E+02 0.0058 30.8 8.7 82 24-105 439-529 (1431)
113 KOG3678 SARM protein (with ste 30.8 5.2E+02 0.011 25.9 10.0 167 49-224 224-408 (832)
114 PF06075 DUF936: Plant protein 30.7 1.5E+02 0.0033 29.8 6.7 72 47-118 483-571 (579)
115 PF14868 DUF4487: Domain of un 30.5 1.4E+02 0.0031 29.8 6.5 71 40-110 473-550 (559)
116 KOG0211 Protein phosphatase 2A 30.1 3.1E+02 0.0068 28.6 9.0 65 43-107 476-542 (759)
117 KOG1240 Protein kinase contain 29.7 4.9E+02 0.011 28.9 10.3 128 4-139 652-787 (1431)
118 cd09243 BRO1_Brox_like Protein 29.6 4.8E+02 0.01 24.5 9.9 99 58-169 168-277 (353)
119 PF04063 DUF383: Domain of unk 29.2 1E+02 0.0022 26.4 4.6 53 26-80 85-137 (192)
120 PF08713 DNA_alkylation: DNA a 29.2 1.4E+02 0.0031 24.7 5.6 56 46-103 120-175 (213)
121 KOG1248 Uncharacterized conser 28.9 5.8E+02 0.012 28.0 10.7 95 8-103 785-889 (1176)
122 KOG2259 Uncharacterized conser 28.6 2.3E+02 0.0049 29.3 7.4 105 51-174 203-319 (823)
123 PF04793 Herpes_BBRF1: BRRF1-l 27.5 2.1E+02 0.0047 26.1 6.6 95 5-99 5-116 (284)
124 cd06561 AlkD_like A new struct 27.4 2.2E+02 0.0047 23.3 6.3 64 49-113 108-171 (197)
125 KOG2171 Karyopherin (importin) 26.9 8.6E+02 0.019 26.5 14.2 100 8-107 118-230 (1075)
126 KOG1820 Microtubule-associated 26.7 6.2E+02 0.013 26.7 10.4 96 26-123 353-454 (815)
127 PF02847 MA3: MA3 domain; Int 26.5 2.7E+02 0.0058 20.6 9.2 65 6-76 2-66 (113)
128 KOG0414 Chromosome condensatio 26.4 4.7E+02 0.01 28.8 9.5 93 6-110 329-426 (1251)
129 PLN03200 cellulose synthase-in 26.3 6.5E+02 0.014 29.6 11.1 67 46-112 609-680 (2102)
130 PF05327 RRN3: RNA polymerase 25.8 6.6E+02 0.014 24.9 11.2 89 5-94 30-122 (563)
131 PF04844 Ovate: Transcriptiona 25.4 2.4E+02 0.0052 19.6 5.6 54 56-112 2-55 (59)
132 PRK13342 recombination factor 25.0 5E+02 0.011 24.4 8.9 62 29-90 234-295 (413)
133 PF02561 FliS: Flagellar prote 24.4 3.3E+02 0.0072 21.0 8.1 55 7-72 27-84 (122)
134 KOG2025 Chromosome condensatio 23.6 8.8E+02 0.019 25.5 12.6 144 4-169 2-153 (892)
135 KOG0915 Uncharacterized conser 23.5 7E+02 0.015 28.4 10.3 109 43-169 995-1108(1702)
136 KOG2025 Chromosome condensatio 23.5 6.1E+02 0.013 26.6 9.4 85 27-111 64-154 (892)
137 PRK05685 fliS flagellar protei 23.5 3.7E+02 0.0081 21.2 8.7 45 18-73 47-91 (132)
138 COG5240 SEC21 Vesicle coat com 23.2 4E+02 0.0086 27.4 7.9 41 8-49 227-267 (898)
139 KOG2213 Apoptosis inhibitor 5/ 23.0 90 0.0019 30.1 3.3 51 41-93 56-106 (460)
140 TIGR02270 conserved hypothetic 22.9 6.7E+02 0.015 23.9 13.1 141 7-166 53-202 (410)
141 KOG0213 Splicing factor 3b, su 22.6 9.5E+02 0.021 25.6 11.0 72 43-114 796-872 (1172)
142 KOG1789 Endocytosis protein RM 22.6 1.1E+03 0.024 26.5 11.2 135 7-148 2006-2167(2235)
143 PF02854 MIF4G: MIF4G domain; 22.3 4.1E+02 0.0088 21.2 7.4 78 29-107 1-79 (209)
144 KOG2137 Protein kinase [Signal 22.2 5.8E+02 0.013 26.4 9.0 33 77-109 383-415 (700)
145 TIGR02277 PaaX_trns_reg phenyl 22.1 1.6E+02 0.0034 26.6 4.7 74 23-102 204-277 (280)
146 KOG1967 DNA repair/transcripti 22.1 4.5E+02 0.0098 28.2 8.3 100 8-107 909-1019(1030)
147 PF14764 SPG48: AP-5 complex s 22.1 4E+02 0.0087 26.1 7.6 54 40-93 256-315 (459)
148 PF14500 MMS19_N: Dos2-interac 22.0 4.5E+02 0.0098 23.4 7.6 60 76-147 201-260 (262)
149 PF11701 UNC45-central: Myosin 21.7 1.7E+02 0.0036 23.8 4.4 40 81-120 41-80 (157)
150 PF03097 BRO1: BRO1-like domai 21.6 6.3E+02 0.014 23.1 11.0 134 27-174 130-273 (377)
151 cd09240 BRO1_Alix Protein-inte 21.1 6.6E+02 0.014 23.2 13.4 101 56-168 171-283 (346)
152 KOG1077 Vesicle coat complex A 20.9 5.4E+02 0.012 27.0 8.4 40 27-66 308-349 (938)
153 KOG0413 Uncharacterized conser 20.8 9.5E+02 0.021 26.4 10.3 97 6-105 574-678 (1529)
154 KOG0946 ER-Golgi vesicle-tethe 20.6 5E+02 0.011 27.5 8.2 127 96-234 76-227 (970)
155 PF15290 Syntaphilin: Golgi-lo 20.5 2.2E+02 0.0047 26.2 5.1 44 61-104 93-152 (305)
No 1
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=100.00 E-value=1.9e-38 Score=279.07 Aligned_cols=138 Identities=32% Similarity=0.538 Sum_probs=111.4
Q ss_pred HhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHh
Q 026338 91 FLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHV 170 (240)
Q Consensus 91 LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vI 170 (240)
||+|+|+.|+|++|+|++++||.+| +|++. +++++++|++|+++|++|++ +|+++|+|||++|+||+|+||
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~-----~~i~~---~~~~~~~W~~~~~lK~~Il~-~~~~~~~gvk~~~iKFle~vI 71 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVF-----RWICV---NPSDEQLWESMNELKDRILS-LWDSENPGVKLAAIKFLERVI 71 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHH-----HHHS-----HHHHHHHHHHHHHHHHHHH-GGGSSSHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHH-----HHHcC---CchHHHHHHHHHHHHHHHHH-HhcCCCchHHHHHHHHHHHHH
Confidence 6799999999999999999999999 55533 38999999999999999999 799999999999999999999
Q ss_pred hhccCCCCCcccccccCCCccccccccCCCCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCCceEEEEeC
Q 026338 171 LLFTSDSNDFENFTKEGSKQTFNISWLSGGHPFLDPVSLTSEANRMLGTLMDLLQSACNLPGSVIITVVN 240 (240)
Q Consensus 171 l~qT~~~~d~~~~~~~~~~~d~sl~~vP~~Hp~l~~~~Le~Ea~~lL~~LL~~l~~~~~~~~~~~i~~in 240 (240)
++||+++++++.+ .++++||||++||+|||+|++++||+||+++||.||++++++. +++++++++||
T Consensus 72 l~qs~~~~~~~~~--~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~-i~~~~~~a~in 138 (239)
T PF11935_consen 72 LVQSPGSSDSPPR--RGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPH-ISSPLLTAIIN 138 (239)
T ss_dssp HHTS---TTS-----GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT---HHHHHHHHH
T ss_pred HhcCCCCCCCccc--cccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHH
Confidence 9999998876544 2234699999999999999999999999999999999999887 88888888775
No 2
>KOG1895 consensus mRNA cleavage and polyadenylation factor II complex, subunit PTA1 [RNA processing and modification]
Probab=99.83 E-value=5.5e-20 Score=184.81 Aligned_cols=180 Identities=35% Similarity=0.485 Sum_probs=169.6
Q ss_pred HHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhh
Q 026338 28 SLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCG 107 (240)
Q Consensus 28 ~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~ 107 (240)
.|+.+++++...++.+.++++|++.++..+....+|+++++++++++.++.+++...++++...+.|+ |.|.++.|.++
T Consensus 2 sl~~~~~~l~~~~~~~~~e~~~~l~el~~~~~~~i~~~l~~~~~~i~~~~~~~~~~lv~~ls~~l~d~-~~~r~~~i~~~ 80 (957)
T KOG1895|consen 2 SLSYAMHLLIDVSSSISDELLTELLELLELNDGLIRCLLVEILLEIGLKDFELCNKLVETLSPYLEDN-PIVRRQSIIKG 80 (957)
T ss_pred cHHHHHHHHhcccccccHhHHHHHHHHHhCCcchhhhhHHHHHhhhhHHHHHhhhhHHHHhhhhhcCc-hhhHHHHHhhh
Confidence 36778889988899999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhhccCCCCCcccccccC
Q 026338 108 TNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFTSDSNDFENFTKEG 187 (240)
Q Consensus 108 t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qT~~~~d~~~~~~~~ 187 (240)
+..+|..++++.+|+.+.++ .++.+++|.+|..+|++|+. ....|+.|||.++.||+|.+|+..|+
T Consensus 81 ~d~~~s~l~~i~~~~~~~~~-~~~~~s~w~~~~~~k~~i~~-~~~~G~v~vk~~~~~f~~~~i~~~t~------------ 146 (957)
T KOG1895|consen 81 ADVARSNLEPIVLQFLHMEK-NDLAESLWTAFHLFKDRICL-DDHQGTVGVKVLAAKFMEQSILLYTP------------ 146 (957)
T ss_pred hhhhhhccHHHHHHHHhcch-hHHHHHHHHHHHHhHHHHhh-ccccCcchhhhhHHHHHHhhhhhhcc------------
Confidence 99999999999999999999 99999999999999999994 55678999999999999999999995
Q ss_pred CCccccccccCCCCCCCChhhHHHHHHHHHHHHHHHHhhhcCC
Q 026338 188 SKQTFNISWLSGGHPFLDPVSLTSEANRMLGTLMDLLQSACNL 230 (240)
Q Consensus 188 ~~~d~sl~~vP~~Hp~l~~~~Le~Ea~~lL~~LL~~l~~~~~~ 230 (240)
.+++|||++++..+..|++..+..||++++.+.+.
T Consensus 147 --------~l~~g~p~l~~~~~~~e~~~~~~~ll~~l~~p~s~ 181 (957)
T KOG1895|consen 147 --------DLARGHPFLSYHKTSSEAEQNLSALLSQLAHPTSQ 181 (957)
T ss_pred --------ccccCCcccccccchHHHHHHHHHHHHHhcCchhh
Confidence 46999999999999999999999999999866554
No 3
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.70 E-value=0.0094 Score=58.68 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=67.9
Q ss_pred cCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHH
Q 026338 38 SADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEE 117 (240)
Q Consensus 38 ~~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~ 117 (240)
..-|++-++-++.++++.-|.+..||++.+.=|-.+|+-.+++++++.++|..||..+++..+..+=.++.++|+.==
T Consensus 51 k~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~-- 128 (556)
T PF05918_consen 51 KHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDP-- 128 (556)
T ss_dssp CC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-H--
T ss_pred hhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCc--
Confidence 346888888888888888888888999888888888888888999999998888887776555444444444544211
Q ss_pred HhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhhcc
Q 026338 118 ITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFT 174 (240)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qT 174 (240)
=.+++.+=+.|.. . .++.+.||--++||+..-+..-.
T Consensus 129 ------------------k~tL~~lf~~i~~-~-~~~de~~Re~~lkFl~~kl~~l~ 165 (556)
T PF05918_consen 129 ------------------KGTLTGLFSQIES-S-KSGDEQVRERALKFLREKLKPLK 165 (556)
T ss_dssp ------------------HHHHHHHHHHHH-----HS-HHHHHHHHHHHHHHGGGS-
T ss_pred ------------------HHHHHHHHHHHHh-c-ccCchHHHHHHHHHHHHHHhhCc
Confidence 1122333344442 1 24667789999999855444333
No 4
>PRK09687 putative lyase; Provisional
Probab=96.38 E-value=0.2 Score=45.19 Aligned_cols=119 Identities=14% Similarity=-0.000 Sum_probs=66.3
Q ss_pred HhhhHHHHhh-cCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhh-hHHHHHHHhhhh
Q 026338 45 AELFPYLVEL-QSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF-FCRVLEEITMQF 122 (240)
Q Consensus 45 ~~~l~~vl~~-~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~l-Y~~~l~~~~~~~ 122 (240)
++.+|-+..+ ..|++.+||+..++.+.+.|.......+.+++.+..++.|+++.|-+.++.+.+.+ -+.++..+. +-
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~-~~ 167 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLI-NL 167 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHH-HH
Confidence 3455555544 45677777777777777776665555566666666667777777777777666543 122222111 11
Q ss_pred hccCCccchHHHHH--HHHHHH-------HHHHHHHhccCCCCchHHHHHHHHhH
Q 026338 123 RWHGKVERWLEELW--TWMVRF-------KDAVFAIALEPGLVGTKLLALKFLET 168 (240)
Q Consensus 123 ~~~~~~~~~~~~~W--~~m~~~-------K~~Il~~~~d~~n~Gvr~~aiKF~e~ 168 (240)
.. .. .+.-..| ..+..+ ...++. +++..+..||..|+..+.+
T Consensus 168 L~-d~--~~~VR~~A~~aLg~~~~~~~~~~~~L~~-~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 168 LK-DP--NGDVRNWAAFALNSNKYDNPDIREAFVA-MLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred hc-CC--CHHHHHHHHHHHhcCCCCCHHHHHHHHH-HhcCCChHHHHHHHHHHHc
Confidence 11 11 1222222 223322 123444 5577788888888877744
No 5
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.22 E-value=0.087 Score=50.36 Aligned_cols=98 Identities=23% Similarity=0.305 Sum_probs=79.2
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHH-HHHHH
Q 026338 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSI-LMPVL 88 (240)
Q Consensus 10 ~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~-~v~~L 88 (240)
+.-+.....+++...+...|+-+-.+. +|++++.++|.|.....|+++.|||-.+--+..+++.+++.+.. .++.+
T Consensus 81 ~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l 157 (526)
T PF01602_consen 81 INSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKL 157 (526)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHH
T ss_pred HHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 444445555566556666666665543 78889999999998888999999999999898999999999887 79999
Q ss_pred HHHhcCCChHHHHHHHHhhhhh
Q 026338 89 LAFLRDGDSGVAGKSIVCGTNF 110 (240)
Q Consensus 89 ~~LL~d~d~~V~K~aI~~~t~l 110 (240)
..+|.|.|+.|+..|+.++..+
T Consensus 158 ~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 158 KQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHTTHSSHHHHHHHHHHHHHH
T ss_pred hhhccCCcchhHHHHHHHHHHH
Confidence 9999999999999988888777
No 6
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=95.94 E-value=0.16 Score=48.61 Aligned_cols=139 Identities=16% Similarity=0.100 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhh----------
Q 026338 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL---------- 75 (240)
Q Consensus 6 ~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~---------- 75 (240)
.+++...+++-+ .+..+|.+.++++=-+.+.+++ .+.+++.++.+..+.+.++||-+==++.....
T Consensus 6 ~~el~~~~~~~~--~~~~~~~~~l~kli~~~~~G~~--~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~ 81 (526)
T PF01602_consen 6 SQELAKILNSFK--IDISKKKEALKKLIYLMMLGYD--ISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILII 81 (526)
T ss_dssp HHHHHHHHHCSS--THHHHHHHHHHHHHHHHHTT-----GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCCC--CchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 445555565555 4666888888887776665543 24777888888767788888877655554321
Q ss_pred -------------------------chhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccc
Q 026338 76 -------------------------KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVER 130 (240)
Q Consensus 76 -------------------------~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~ 130 (240)
..++++..+++.+..++.|++|.|-|.|+.|...+|+..= +
T Consensus 82 n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p--------------~ 147 (526)
T PF01602_consen 82 NSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDP--------------D 147 (526)
T ss_dssp HHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH--------------C
T ss_pred HHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCH--------------H
Confidence 2357888888899999999999999999999999998622 1
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHH
Q 026338 131 WLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETH 169 (240)
Q Consensus 131 ~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~v 169 (240)
..+..| -+.+.+ ++.+.+.||+.+|+.++..+
T Consensus 148 ~~~~~~------~~~l~~-lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 148 LVEDEL------IPKLKQ-LLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp CHHGGH------HHHHHH-HTTHSSHHHHHHHHHHHHHH
T ss_pred HHHHHH------HHHHhh-hccCCcchhHHHHHHHHHHH
Confidence 111112 333445 55667799999999999877
No 7
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.89 E-value=0.14 Score=52.15 Aligned_cols=106 Identities=14% Similarity=0.160 Sum_probs=81.6
Q ss_pred HHHHHHHHHhhcC-CChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHH-
Q 026338 7 DQALSLLAAANNH-GDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSIL- 84 (240)
Q Consensus 7 ~~v~~lln~A~~~-~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~~- 84 (240)
++++-.+|.=..- .|..+.+... ..|.+-.=+++++++++++.+.+.-.|+++.|||-.+--+.++...++++.+..
T Consensus 88 ~~~lLavNti~kDl~d~N~~iR~~-AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g 166 (757)
T COG5096 88 ELALLAVNTIQKDLQDPNEEIRGF-ALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELG 166 (757)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHH-HHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhccc
Confidence 4444444444422 2222444443 355555557888999999999999999999999999999999998888876665
Q ss_pred -HHHHHHHhcCCChHHHHHHHHhhhhhhHH
Q 026338 85 -MPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (240)
Q Consensus 85 -v~~L~~LL~d~d~~V~K~aI~~~t~lY~~ 113 (240)
...+..|+.|+||.|+..|..+...++|.
T Consensus 167 ~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 167 LIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 56777788899999999999999999998
No 8
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.51 E-value=0.12 Score=52.78 Aligned_cols=94 Identities=14% Similarity=0.217 Sum_probs=75.4
Q ss_pred cCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHh-----------------------
Q 026338 18 NHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIG----------------------- 74 (240)
Q Consensus 18 ~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~----------------------- 74 (240)
..+...+|++.+++.=--...+++ ++.++|.|+-+-..++.|+||-+=-+++-..
T Consensus 29 ~s~n~~~kidAmK~iIa~M~~G~d--mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~ 106 (757)
T COG5096 29 ESSNDYKKIDAMKKIIAQMSLGED--MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNE 106 (757)
T ss_pred cccChHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCH
Confidence 334456899999998777766666 7899999998766888999998866664422
Q ss_pred ------------hchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHH
Q 026338 75 ------------LKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (240)
Q Consensus 75 ------------~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~ 113 (240)
.+..+++..+++.+..+++|+.+.|-|.|+.|.+.+|+.
T Consensus 107 ~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l 157 (757)
T COG5096 107 EIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL 157 (757)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc
Confidence 134688999999999999999999999999999999953
No 9
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.46 E-value=0.13 Score=39.00 Aligned_cols=77 Identities=16% Similarity=0.072 Sum_probs=59.5
Q ss_pred hhHHHHhhcCCchhhHHHHHHHHHHHHhhchh---hhHHHHHHHHHHHhcCCChHHHHHHHHhhh---hhhHH-HHHHHh
Q 026338 47 LFPYLVELQSSPESLVRKSLIETIEDIGLKAM---EHSSILMPVLLAFLRDGDSGVAGKSIVCGT---NFFCR-VLEEIT 119 (240)
Q Consensus 47 ~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~---e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t---~lY~~-~l~~~~ 119 (240)
.+.+.++--.|+.+++|-++.-.+.....++. ...+.++..+...|+|+|+.|+=.||++.+ ..||. ++..++
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~ 83 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILL 83 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHH
Confidence 34455555578888999999988888776554 568888889999999999999999999874 55776 776666
Q ss_pred hhhh
Q 026338 120 MQFR 123 (240)
Q Consensus 120 ~~~~ 123 (240)
..+.
T Consensus 84 ~~y~ 87 (92)
T PF10363_consen 84 DEYA 87 (92)
T ss_pred HHHh
Confidence 6553
No 10
>PTZ00429 beta-adaptin; Provisional
Probab=95.14 E-value=0.58 Score=47.93 Aligned_cols=128 Identities=14% Similarity=0.070 Sum_probs=87.4
Q ss_pred CCChHHHHHHHHHHHHHHhcC-CCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhh----------------------
Q 026338 19 HGDLAVKLSSLKQVRGILSSA-DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL---------------------- 75 (240)
Q Consensus 19 ~~d~~~kl~~L~q~relll~~-~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~---------------------- 75 (240)
..|..+|.+.++++--....+ |- ..+++.|+..-...+.++||.+-=++...+.
T Consensus 43 s~~~~~kk~alKkvIa~mt~G~Dv---S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np 119 (746)
T PTZ00429 43 GTDSYRKKAAVKRIIANMTMGRDV---SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSP 119 (746)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCc---hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCH
Confidence 346668899998887777444 44 5678888877667788999998776654321
Q ss_pred -------------chhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHH
Q 026338 76 -------------KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRF 142 (240)
Q Consensus 76 -------------~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~ 142 (240)
+.++++..++..+...+.|.+|.|-|.|+.|...+|+.-=+.+- +..|
T Consensus 120 ~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~-------------~~~~------ 180 (746)
T PTZ00429 120 VVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFY-------------QQDF------ 180 (746)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccc-------------ccch------
Confidence 23466777777888888899999999999999999874221110 1112
Q ss_pred HHHHHHHhccCCCCchHHHHHHHHhHH
Q 026338 143 KDAVFAIALEPGLVGTKLLALKFLETH 169 (240)
Q Consensus 143 K~~Il~~~~d~~n~Gvr~~aiKF~e~v 169 (240)
.+.+.. +++..+.+|..+|+..+..+
T Consensus 181 ~~~L~~-LL~D~dp~Vv~nAl~aL~eI 206 (746)
T PTZ00429 181 KKDLVE-LLNDNNPVVASNAAAIVCEV 206 (746)
T ss_pred HHHHHH-HhcCCCccHHHHHHHHHHHH
Confidence 223333 45678888888888776655
No 11
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=94.74 E-value=0.075 Score=38.25 Aligned_cols=56 Identities=25% Similarity=0.449 Sum_probs=42.2
Q ss_pred HHHHhh-cCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhh
Q 026338 49 PYLVEL-QSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (240)
Q Consensus 49 ~~vl~~-~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~l 110 (240)
|.+++. ..+++..+|...+..+.+.+ -..+++.|..+++|+|+.|...|+.+.+.+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG------DPEAIPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 445543 36888999999888887443 225677888888999999999988888766
No 12
>PTZ00429 beta-adaptin; Provisional
Probab=94.54 E-value=0.47 Score=48.63 Aligned_cols=73 Identities=16% Similarity=0.102 Sum_probs=57.5
Q ss_pred CCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHH--HHHHHHHHHhcCCChHHHHHHHHhhhhhh
Q 026338 39 ADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSS--ILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (240)
Q Consensus 39 ~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~--~~v~~L~~LL~d~d~~V~K~aI~~~t~lY 111 (240)
..|++++.+.+.+...-.|+++.|||-.+=-+..+...+++++. ..++.|..||.|.||.|+-.|+.++..+-
T Consensus 133 r~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 133 RVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVN 207 (746)
T ss_pred CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 45666666776666666799999999988777777777787754 45778889999999999999988776663
No 13
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.46 E-value=0.22 Score=50.65 Aligned_cols=99 Identities=21% Similarity=0.251 Sum_probs=79.2
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhc-CCchhhHHHHHHHHHHHH----------------h-
Q 026338 13 LAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQ-SSPESLVRKSLIETIEDI----------------G- 74 (240)
Q Consensus 13 ln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~-~d~~~~vRk~~~~fiee~----------------~- 74 (240)
+.++.-.+|..+|++.++++--+++++++ +|+++-.|+-|. +.++.+++|.+-=|.|-+ |
T Consensus 25 ik~~Lek~~~~~KIeamK~ii~~mlnGe~--~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcn 102 (948)
T KOG1058|consen 25 IKEKLEKGDDEVKIEAMKKIIALMLNGED--LPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCN 102 (948)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHcCCC--chHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHH
Confidence 45556668888999999999999998876 455666666663 467889999887665432 1
Q ss_pred -----------------------hchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHH
Q 026338 75 -----------------------LKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (240)
Q Consensus 75 -----------------------~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~ 113 (240)
.+.+|++..++|.++.=|+...+.|-|.||.|..+||+.
T Consensus 103 a~RkDLQHPNEyiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~ 164 (948)
T KOG1058|consen 103 AYRKDLQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN 164 (948)
T ss_pred HHhhhccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh
Confidence 135789999999999999999999999999999999997
No 14
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.38 E-value=0.47 Score=40.48 Aligned_cols=186 Identities=15% Similarity=0.176 Sum_probs=102.0
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhcC-CCchHHhhhHHH-------HhhcCCchhhHHHHHHHHHHHHhhc---h
Q 026338 9 ALSLLAAANNHGDLAVKLSSLKQVRGILSSA-DPSLAAELFPYL-------VELQSSPESLVRKSLIETIEDIGLK---A 77 (240)
Q Consensus 9 v~~lln~A~~~~d~~~kl~~L~q~relll~~-~p~ll~~~l~~v-------l~~~~d~~~~vRk~~~~fiee~~~~---~ 77 (240)
+...|..-....|=.++.+.|.++|.++.++ .....+.|++.+ ..--.|..+-|-+....++.+++.. +
T Consensus 8 ~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~ 87 (228)
T PF12348_consen 8 ILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH 87 (228)
T ss_dssp S-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh
Confidence 3455555445578889999999999999866 223344444433 2233455667888888888887643 2
Q ss_pred -hhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHH-HHHHHHHhccCCC
Q 026338 78 -MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRF-KDAVFAIALEPGL 155 (240)
Q Consensus 78 -~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~-K~~Il~~~~d~~n 155 (240)
..++..+++.|...+.|....+...|-.|...++..+= ....+ ...+.. ...+.|
T Consensus 88 ~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~----------------------~~~~~~~~~l~~-~~~~Kn 144 (228)
T PF12348_consen 88 FEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS----------------------YSPKILLEILSQ-GLKSKN 144 (228)
T ss_dssp GHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-----------------------H--HHHHHHHHH-HTT-S-
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC----------------------cHHHHHHHHHHH-HHhCCC
Confidence 34688889999999999887777777766655543111 00112 333444 668999
Q ss_pred CchHHHHHHHHhHHhhhccCCCCCcccccccCCCccccc-cccCCCCCCC--ChhhHHHHHHHHHHHHHHHHh
Q 026338 156 VGTKLLALKFLETHVLLFTSDSNDFENFTKEGSKQTFNI-SWLSGGHPFL--DPVSLTSEANRMLGTLMDLLQ 225 (240)
Q Consensus 156 ~Gvr~~aiKF~e~vIl~qT~~~~d~~~~~~~~~~~d~sl-~~vP~~Hp~l--~~~~Le~Ea~~lL~~LL~~l~ 225 (240)
..+|..|..++..++..+...... ... ...+ ..+|.-.+.+ .-+...+.|+..|..+-+...
T Consensus 145 ~~vR~~~~~~l~~~l~~~~~~~~~---l~~-----~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 145 PQVREECAEWLAIILEKWGSDSSV---LQK-----SAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HHHHHHHHHHHHHHHTT-----GG---G-------HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHccchHhh---hcc-----cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 999999999998887776511110 000 0001 1223223333 245678888888888877665
No 15
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.24 E-value=3.5 Score=36.08 Aligned_cols=112 Identities=17% Similarity=0.165 Sum_probs=70.1
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhh--------cC--CchhhHHHHHHHHHHHHhhchh
Q 026338 9 ALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVEL--------QS--SPESLVRKSLIETIEDIGLKAM 78 (240)
Q Consensus 9 v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~--------~~--d~~~~vRk~~~~fiee~~~~~~ 78 (240)
+++.|..=...+....+--.++.+-.+.. +++..+ .++..++.+ .. +...+..--.+--+.++|..++
T Consensus 39 v~~~L~~L~~~~~~~~~~~~~rLl~~lw~-~~~r~f-~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p 116 (234)
T PF12530_consen 39 VLQTLVSLVEQGSLELRYVALRLLTLLWK-ANDRHF-PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRP 116 (234)
T ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHHHH-hCchHH-HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhCh
Confidence 44444443433332222345566666664 555444 344445444 11 2223444444567889999999
Q ss_pred hhHHHHHHHHHHHh-cCCChHHHHHHHHhhhhhhHHHHHHHhhhh
Q 026338 79 EHSSILMPVLLAFL-RDGDSGVAGKSIVCGTNFFCRVLEEITMQF 122 (240)
Q Consensus 79 e~~~~~v~~L~~LL-~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~ 122 (240)
++-..+++.+..+| .+.++.+.--++++.+.+.+.-.-...+.|
T Consensus 117 ~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w 161 (234)
T PF12530_consen 117 DHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAW 161 (234)
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 99999999999999 788889999999999888876554444444
No 16
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.97 E-value=0.38 Score=36.71 Aligned_cols=62 Identities=19% Similarity=0.217 Sum_probs=51.8
Q ss_pred chHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhch----hhhHHHHHHHHHHHhcCCChHHHHHH
Q 026338 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA----MEHSSILMPVLLAFLRDGDSGVAGKS 103 (240)
Q Consensus 42 ~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~----~e~~~~~v~~L~~LL~d~d~~V~K~a 103 (240)
..+++++|.|+..-.|++..||-...+-+..+++.. ..++..+.+.|..+..|.|+.|...|
T Consensus 23 ~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a 88 (97)
T PF12755_consen 23 KYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA 88 (97)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH
Confidence 466899999998888999999999999999988643 24688899999999999999876543
No 17
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.95 E-value=0.52 Score=39.37 Aligned_cols=86 Identities=17% Similarity=0.250 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhh-hHHHHHHHHHHHhcCCChHHHHH
Q 026338 24 VKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAME-HSSILMPVLLAFLRDGDSGVAGK 102 (240)
Q Consensus 24 ~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e-~~~~~v~~L~~LL~d~d~~V~K~ 102 (240)
.|...+.-.-+|.. ..|++++.++|.+...=.|+++.|||...-.+......+.- .=...+..+..++.|+|+.|...
T Consensus 4 vR~n~i~~l~DL~~-r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~ 82 (178)
T PF12717_consen 4 VRNNAIIALGDLCI-RYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSL 82 (178)
T ss_pred HHHHHHHHHHHHHH-hCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHH
Confidence 45556666667774 77888888888887666688888888877766665433211 11112223445567888888777
Q ss_pred HHHhhhhh
Q 026338 103 SIVCGTNF 110 (240)
Q Consensus 103 aI~~~t~l 110 (240)
|..++..+
T Consensus 83 A~~~~~e~ 90 (178)
T PF12717_consen 83 ARSFFSEL 90 (178)
T ss_pred HHHHHHHH
Confidence 76665544
No 18
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=93.77 E-value=0.6 Score=33.38 Aligned_cols=83 Identities=25% Similarity=0.408 Sum_probs=53.7
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHH
Q 026338 12 LLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAF 91 (240)
Q Consensus 12 lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~L 91 (240)
|++.....+|...|....+.+.++ ++ ++.+|.++++-.|+++.||+..+..++.++ -..+++.|..+
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~---~~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------~~~~~~~L~~~ 70 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGEL---GD----PEAIPALIELLKDEDPMVRRAAARALGRIG------DPEAIPALIKL 70 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCC---TH----HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------HHHTHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHc---CC----HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------CHHHHHHHHHH
Confidence 344443567765666555555532 23 466777777767999999999999998765 24466678888
Q ss_pred hcCCC-hHHHHHHHHhh
Q 026338 92 LRDGD-SGVAGKSIVCG 107 (240)
Q Consensus 92 L~d~d-~~V~K~aI~~~ 107 (240)
+.+++ ..|-+.++.+.
T Consensus 71 l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 71 LQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HTC-SSHHHHHHHHHHH
T ss_pred HcCCCcHHHHHHHHhhc
Confidence 77654 44555566654
No 19
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.49 E-value=0.26 Score=41.69 Aligned_cols=70 Identities=16% Similarity=0.235 Sum_probs=58.6
Q ss_pred chHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhh
Q 026338 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (240)
Q Consensus 42 ~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY 111 (240)
++...|++.|+++..+++..+|....++++-+-+.---+=..|+|+|..|..|+++.+-++|......++
T Consensus 4 ~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~ 73 (187)
T PF12830_consen 4 ALVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELH 73 (187)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999998866544444567889999999999999999988877763
No 20
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=92.95 E-value=4.2 Score=33.85 Aligned_cols=131 Identities=12% Similarity=0.066 Sum_probs=86.8
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc-hhhhHHHHH
Q 026338 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLK-AMEHSSILM 85 (240)
Q Consensus 7 ~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~-~~e~~~~~v 85 (240)
|+.+..+-.....++...|-..|.-+..|+.++.-..=+.++..++..-.|++.+||.....|+.|...+ .++.+...+
T Consensus 24 e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~ 103 (178)
T PF12717_consen 24 EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNF 103 (178)
T ss_pred HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 4445566666666788899999999999998653334455556666666799999999999999998877 666555555
Q ss_pred HHHHHHhcCC--ChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHH
Q 026338 86 PVLLAFLRDG--DSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFA 148 (240)
Q Consensus 86 ~~L~~LL~d~--d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~ 148 (240)
+-+..-|++. .+..-+....-.-.+|...++++.+ ++..+..+.++=.+++.
T Consensus 104 ~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~-----------d~~~~~l~~kl~~~~~~ 157 (178)
T PF12717_consen 104 PELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK-----------DKQKESLVEKLCQRFLN 157 (178)
T ss_pred HHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc-----------HHHHHHHHHHHHHHHHH
Confidence 5555555542 2222123344456788888844432 46666666666666655
No 21
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.29 E-value=0.29 Score=29.11 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=21.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHhhhhhhH
Q 026338 84 LMPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (240)
Q Consensus 84 ~v~~L~~LL~d~d~~V~K~aI~~~t~lY~ 112 (240)
++|.+..+++|+++.|-+.|+.|.+.+.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 35677788888888888888888887765
No 22
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=92.27 E-value=1.8 Score=32.09 Aligned_cols=91 Identities=14% Similarity=0.187 Sum_probs=61.5
Q ss_pred CChHHHHHHHHHHHHHHhcCCC---chHH-hhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhh---hH--HHHHHHHHH
Q 026338 20 GDLAVKLSSLKQVRGILSSADP---SLAA-ELFPYLVELQSSPESLVRKSLIETIEDIGLKAME---HS--SILMPVLLA 90 (240)
Q Consensus 20 ~d~~~kl~~L~q~relll~~~p---~ll~-~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e---~~--~~~v~~L~~ 90 (240)
++...+...+..+..+..+.++ .+.. +++|.++++-.+++..+++..+..+..++...++ .+ ..+++.|..
T Consensus 19 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~ 98 (120)
T cd00020 19 SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVN 98 (120)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHH
Confidence 3345677777777777753211 2333 6777777775677888999988888888754322 11 225677778
Q ss_pred HhcCCChHHHHHHHHhhhhh
Q 026338 91 FLRDGDSGVAGKSIVCGTNF 110 (240)
Q Consensus 91 LL~d~d~~V~K~aI~~~t~l 110 (240)
++.+.+..+.+.+..+.+++
T Consensus 99 ~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 99 LLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHh
Confidence 88888888888888877765
No 23
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=92.22 E-value=0.43 Score=31.71 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHhh----chhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhh
Q 026338 61 LVRKSLIETIEDIGL----KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (240)
Q Consensus 61 ~vRk~~~~fiee~~~----~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~l 110 (240)
.||+..+..|.+++. ....+.+.+++.|..+|+|+++.|-..|.-+.++|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 577777777775442 23458999999999999999999988888777764
No 24
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=92.07 E-value=0.5 Score=35.15 Aligned_cols=65 Identities=20% Similarity=0.222 Sum_probs=50.1
Q ss_pred hhHHHHhhcCCchhhHHHHHHHHHHHHhhchh----hhHH-HHHHHHHHHhcCCChHHHHHHHHhhhhhh
Q 026338 47 LFPYLVELQSSPESLVRKSLIETIEDIGLKAM----EHSS-ILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (240)
Q Consensus 47 ~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~----e~~~-~~v~~L~~LL~d~d~~V~K~aI~~~t~lY 111 (240)
.+|.++++-.+.+.++|+..+..+..+|...+ ++.. .+++.+..+++|+++.|.+.++.+.+++-
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~ 77 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLA 77 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 55666666556678999999999998886522 2333 77888999999999999999998888874
No 25
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=91.00 E-value=8.9 Score=37.40 Aligned_cols=146 Identities=18% Similarity=0.193 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCC--chH--HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhH
Q 026338 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADP--SLA--AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS 81 (240)
Q Consensus 6 ~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p--~ll--~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~ 81 (240)
-.+..+.|.....+++...|...+++++.++-+++. .++ .++++.++..-.+++.+|.+-.+..|..+++...++
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~- 153 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL- 153 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-
Confidence 456677888888888877888888888888754432 112 567777776667888889999999998887654433
Q ss_pred HHH-----HHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHH--HHHHHHHHhccCC
Q 026338 82 SIL-----MPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVR--FKDAVFAIALEPG 154 (240)
Q Consensus 82 ~~~-----v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~--~K~~Il~~~~d~~ 154 (240)
..+ +..|..++...+..+.-|+..++..+.. ..++.++.+.. +-+.+++ -++++
T Consensus 154 ~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~------------------~S~~~~~~~~~sgll~~ll~-eL~~d 214 (503)
T PF10508_consen 154 EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIAS------------------HSPEAAEAVVNSGLLDLLLK-ELDSD 214 (503)
T ss_pred HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHh------------------cCHHHHHHHHhccHHHHHHH-HhcCc
Confidence 223 6667777766566665554443333221 12444444443 6666666 44666
Q ss_pred CCchHHHHHHHHhHHhh
Q 026338 155 LVGTKLLALKFLETHVL 171 (240)
Q Consensus 155 n~Gvr~~aiKF~e~vIl 171 (240)
..=+|+.|+..+..+..
T Consensus 215 DiLvqlnalell~~La~ 231 (503)
T PF10508_consen 215 DILVQLNALELLSELAE 231 (503)
T ss_pred cHHHHHHHHHHHHHHHc
Confidence 66688888887776655
No 26
>PRK09687 putative lyase; Provisional
Probab=90.82 E-value=1.6 Score=39.34 Aligned_cols=98 Identities=13% Similarity=0.170 Sum_probs=62.1
Q ss_pred HHHHHHHHHHh-hcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHH
Q 026338 6 RDQALSLLAAA-NNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSIL 84 (240)
Q Consensus 6 ~~~v~~lln~A-~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~~ 84 (240)
.++++.+|-.. ...+|...+......+-++- ...+...+.+++.+.....|++..||+.++.-+.+++ + ..+
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~-~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--~----~~a 160 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRC-KKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN--D----EAA 160 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccc-ccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC--C----HHH
Confidence 46677777766 44477666766666666653 2333334556665555566777788888877775443 1 235
Q ss_pred HHHHHHHhcCCChHHHHHHHHhhhhh
Q 026338 85 MPVLLAFLRDGDSGVAGKSIVCGTNF 110 (240)
Q Consensus 85 v~~L~~LL~d~d~~V~K~aI~~~t~l 110 (240)
++.|..+|+|+|+.|-+.|+.+.+.+
T Consensus 161 i~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 161 IPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 55677777777777777777777765
No 27
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.02 E-value=4.8 Score=41.54 Aligned_cols=103 Identities=18% Similarity=0.209 Sum_probs=75.0
Q ss_pred CCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHh
Q 026338 40 DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEIT 119 (240)
Q Consensus 40 ~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~ 119 (240)
=|.+.|.++-.|=+...|+++.|||-.|.-|-..-.-+++.=..+++.+..||.|.+|.|+-.|+.++..+||.=|+++-
T Consensus 137 vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIH 216 (968)
T KOG1060|consen 137 VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIH 216 (968)
T ss_pred hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhh
Confidence 34445555555556678999999999998887666656666558888999999999999999999999999999998776
Q ss_pred hhhhccCCccchHHHHHHHHHHHH
Q 026338 120 MQFRWHGKVERWLEELWTWMVRFK 143 (240)
Q Consensus 120 ~~~~~~~~~~~~~~~~W~~m~~~K 143 (240)
+.+..-++.=+ +-+-|..+..|+
T Consensus 217 knyrklC~ll~-dvdeWgQvvlI~ 239 (968)
T KOG1060|consen 217 KNYRKLCRLLP-DVDEWGQVVLIN 239 (968)
T ss_pred HHHHHHHhhcc-chhhhhHHHHHH
Confidence 65543221111 244576665554
No 28
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=89.63 E-value=12 Score=31.78 Aligned_cols=84 Identities=19% Similarity=0.187 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCCchHHhh-hHHHHhhcCCchhhHHHHHHHHHHHHhhchh---------hhHHHHHHHHHHHhcCCChH
Q 026338 29 LKQVRGILSSADPSLAAEL-FPYLVELQSSPESLVRKSLIETIEDIGLKAM---------EHSSILMPVLLAFLRDGDSG 98 (240)
Q Consensus 29 L~q~relll~~~p~ll~~~-l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~---------e~~~~~v~~L~~LL~d~d~~ 98 (240)
-+-...++.+-. +.+.+ ++.+.....++++.+|..+++++..+..+.+ ..+..+++.+..++.|.++.
T Consensus 115 ~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~ 192 (228)
T PF12348_consen 115 NNALDAIIESCS--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPE 192 (228)
T ss_dssp HHHHHHHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HH
T ss_pred HHHHHHHHHHCC--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHH
Confidence 333444443222 33555 4444445678899999999999988765433 23577899999999999999
Q ss_pred HHHHHHHhhhhhhHHH
Q 026338 99 VAGKSIVCGTNFFCRV 114 (240)
Q Consensus 99 V~K~aI~~~t~lY~~~ 114 (240)
|-+.|-.++..+|...
T Consensus 193 VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 193 VREAARECLWALYSHF 208 (228)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC
Confidence 9888888777776653
No 29
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=89.15 E-value=15 Score=35.81 Aligned_cols=111 Identities=14% Similarity=0.151 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHH----HHhhcCC-chhhHHHHHHHHHHHHhhchhh
Q 026338 5 SRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPY----LVELQSS-PESLVRKSLIETIEDIGLKAME 79 (240)
Q Consensus 5 ~~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~----vl~~~~d-~~~~vRk~~~~fiee~~~~~~e 79 (240)
..+.|.++|++-..+-.+.++=..|.+..+++-++.=++-++++.+ ++|.-.| .+.-.|+-....|+++|...+.
T Consensus 284 ~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 284 QSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred hhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 4577888998888775556788888889999877765555555555 4466556 5667888888999999975443
Q ss_pred -h---HHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHH
Q 026338 80 -H---SSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVL 115 (240)
Q Consensus 80 -~---~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l 115 (240)
+ ..-++..+..--.|.++.|++-|-+++..+--..+
T Consensus 364 ~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~ 403 (516)
T KOG2956|consen 364 RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHL 403 (516)
T ss_pred hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhC
Confidence 1 22222223333358888999999888765544433
No 30
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.65 E-value=6.1 Score=41.90 Aligned_cols=131 Identities=19% Similarity=0.160 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhcC-C--CchHHhhhHHHHhhc---CCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHH---hcCC
Q 026338 25 KLSSLKQVRGILSSA-D--PSLAAELFPYLVELQ---SSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAF---LRDG 95 (240)
Q Consensus 25 kl~~L~q~relll~~-~--p~ll~~~l~~vl~~~---~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~L---L~d~ 95 (240)
+++.|.+-|....+. + -+++..++.+| |- .|-.+++|--+++.|..-+...|+++..-- -|.++ |.|.
T Consensus 262 rle~Ll~~r~etqe~~d~i~~mi~~if~sV--FVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~ds-YLKYiGWtLsDk 338 (1048)
T KOG2011|consen 262 RLESLLMLRKETQEQQDEIESMINDIFDSV--FVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDS-YLKYIGWTLSDK 338 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhe--eeeecccCchHHHHHHHHHHHHHHHhccHHHhcch-HHHHhcceeecC
Confidence 467777777666432 2 13556666666 32 366789999999999988899998754332 35554 7899
Q ss_pred ChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhhccC
Q 026338 96 DSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFTS 175 (240)
Q Consensus 96 d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qT~ 175 (240)
+..|-++++.+.-.+|-.- ......=.-..+||++|+....-..+.|||...++-. ++.-++
T Consensus 339 ~~~VRl~~lkaL~~L~e~~---------------~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~---~~~~~~ 400 (1048)
T KOG2011|consen 339 NGTVRLRCLKALIKLYEKD---------------EDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLC---LLLSSS 400 (1048)
T ss_pred ccHHHHHHHHHHHHHHhcc---------------ccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHH---HHHhcc
Confidence 9999999999988888640 2223334456789999999552388999999988765 444444
Q ss_pred C
Q 026338 176 D 176 (240)
Q Consensus 176 ~ 176 (240)
+
T Consensus 401 g 401 (1048)
T KOG2011|consen 401 G 401 (1048)
T ss_pred c
Confidence 4
No 31
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=87.57 E-value=0.95 Score=26.83 Aligned_cols=29 Identities=31% Similarity=0.516 Sum_probs=23.5
Q ss_pred hhHHHHhhcCCchhhHHHHHHHHHHHHhh
Q 026338 47 LFPYLVELQSSPESLVRKSLIETIEDIGL 75 (240)
Q Consensus 47 ~l~~vl~~~~d~~~~vRk~~~~fiee~~~ 75 (240)
++|.+++.-.|++.+||...+.-+.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46777788789999999999999887764
No 32
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=86.08 E-value=4.1 Score=34.76 Aligned_cols=70 Identities=19% Similarity=0.127 Sum_probs=53.7
Q ss_pred CchHHhhhHHHHhhcCCchhhHHHHHHHHHHH-HhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhh
Q 026338 41 PSLAAELFPYLVELQSSPESLVRKSLIETIED-IGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (240)
Q Consensus 41 p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee-~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~l 110 (240)
..+|+-|++++-|..+.-.---++=+.++++. ...+-.-.+++++..|+.-|+..|+.|.+.+..+.-.+
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~L 107 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQL 107 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 35889999999887655555556666677765 23344567999999999999999999999998888777
No 33
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.24 E-value=1.2 Score=48.12 Aligned_cols=126 Identities=14% Similarity=0.142 Sum_probs=85.3
Q ss_pred ChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhh---cCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCCh
Q 026338 21 DLAVKLSSLKQVRGILSSADPSLAAELFPYLVEL---QSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDS 97 (240)
Q Consensus 21 d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~---~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~ 97 (240)
+.+.++..+......++ ++|+...+.-- .+.+ -.|....+|+.++=-..++-+...++.+.++..+...++|.-+
T Consensus 313 ~~~vR~~~v~~~~~~l~-~~~~~~~~~~~-~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~ 390 (1266)
T KOG1525|consen 313 SVEVRMECVESIKQCLL-NNPSIAKASTI-LLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKI 390 (1266)
T ss_pred ChhhhhhHHHHhHHHHh-cCchhhhHHHH-HHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhH
Confidence 34467777778877776 46655422222 2222 2455556666654333333344566766677778888899999
Q ss_pred HHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchH
Q 026338 98 GVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTK 159 (240)
Q Consensus 98 ~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr 159 (240)
.|-|.||..++.+|..+....+ ......|..+..|++.+|. .++-.+.-.|
T Consensus 391 ~VR~~Am~~LaqlYk~~~~~~~----------~~~k~~t~~~swIp~kLL~-~~y~~~~~~r 441 (1266)
T KOG1525|consen 391 KVRKQAMNGLAQLYKNVYCLRS----------AGGKEITPPFSWIPDKLLH-LYYENDLDDR 441 (1266)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc----------cCcccccccccccchhHHh-hHhhccccHH
Confidence 9999999999999998772222 3357889999999999999 5565556666
No 34
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=85.12 E-value=7.8 Score=38.52 Aligned_cols=132 Identities=14% Similarity=0.067 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhcC-CCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHH
Q 026338 26 LSSLKQVRGILSSA-DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSI 104 (240)
Q Consensus 26 l~~L~q~relll~~-~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI 104 (240)
++.|.+..+.+-+. |.+-=.+-+-.+|+... .+...++..++||-.-++.-|++...++.++..|.+|+|+.|-+.||
T Consensus 2 ie~lY~~~~~L~~a~d~~~~~~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~ai 80 (556)
T PF05918_consen 2 IEKLYENYEILADAKDKSQHEEDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAI 80 (556)
T ss_dssp HHHHHHHHHHHHHTGGGGGGHHHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHH
T ss_pred HHHHHHHHhHhhcCCCcccCHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 45566666666421 21111334455665543 46889999999999998999999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHhh------hhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHh
Q 026338 105 VCGTNFFCRVLEEITM------QFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLE 167 (240)
Q Consensus 105 ~~~t~lY~~~l~~~~~------~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e 167 (240)
-..-.+.+..=+++.+ |-+. .+-=.-+...|....+ ++..++-|+=..-.+.++
T Consensus 81 k~lp~~ck~~~~~v~kvaDvL~QlL~--------tdd~~E~~~v~~sL~~-ll~~d~k~tL~~lf~~i~ 140 (556)
T PF05918_consen 81 KGLPQLCKDNPEHVSKVADVLVQLLQ--------TDDPVELDAVKNSLMS-LLKQDPKGTLTGLFSQIE 140 (556)
T ss_dssp HHGGGG--T--T-HHHHHHHHHHHTT-----------HHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHH
T ss_pred HhHHHHHHhHHHHHhHHHHHHHHHHh--------cccHHHHHHHHHHHHH-HHhcCcHHHHHHHHHHHH
Confidence 9988887653322211 2111 1111224455666666 445666666655555554
No 35
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=84.84 E-value=14 Score=28.04 Aligned_cols=73 Identities=16% Similarity=0.087 Sum_probs=52.7
Q ss_pred hhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCC
Q 026338 77 AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLV 156 (240)
Q Consensus 77 ~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~ 156 (240)
-.+++..+++.+...+.|+|+-|--.|..++.++-+.+= .+.+..+.++=+.+.. .....+.
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~-----------------~~~l~~f~~IF~~L~k-l~~D~d~ 82 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR-----------------GEILPYFNEIFDALCK-LSADPDE 82 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHH-HHcCCch
Confidence 467899999999999999999998888877666644322 5566677777777777 4455566
Q ss_pred chHHHHHHHHhH
Q 026338 157 GTKLLALKFLET 168 (240)
Q Consensus 157 Gvr~~aiKF~e~ 168 (240)
.||-+| .++-+
T Consensus 83 ~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 83 NVRSAA-ELLDR 93 (97)
T ss_pred hHHHHH-HHHHH
Confidence 688777 34443
No 36
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=83.01 E-value=16 Score=32.84 Aligned_cols=97 Identities=6% Similarity=-0.057 Sum_probs=63.0
Q ss_pred hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhh----------chhhhHHHHHHHHHHHhc--------CCChHHHHHHH
Q 026338 43 LAAELFPYLVELQSSPESLVRKSLIETIEDIGL----------KAMEHSSILMPVLLAFLR--------DGDSGVAGKSI 104 (240)
Q Consensus 43 ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~----------~~~e~~~~~v~~L~~LL~--------d~d~~V~K~aI 104 (240)
..+-++|.+|.+.-|.+.++|..+...+..... ++..+....-+.|.-.+. ++.+.+...+.
T Consensus 116 ~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay 195 (282)
T PF10521_consen 116 HWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAY 195 (282)
T ss_pred hhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHH
Confidence 446788888888888899999999998877653 233444444445554444 56677888877
Q ss_pred HhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhc
Q 026338 105 VCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIAL 151 (240)
Q Consensus 105 ~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~ 151 (240)
-|...+|+..+ . . +.....+.....+.+.|++.+.
T Consensus 196 ~~L~~L~~~~~-----~--~-----~~~~r~~~l~~~l~e~IL~~~~ 230 (282)
T PF10521_consen 196 PALLSLLKTQE-----N--D-----DSNPRSTWLDKILREGILSSME 230 (282)
T ss_pred HHHHHHHHhhc-----c--C-----CcccchHHHHHHHHHHHhhhce
Confidence 77777777655 1 1 2334444444555566887443
No 37
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.63 E-value=7.5 Score=40.15 Aligned_cols=102 Identities=19% Similarity=0.248 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHH----HHH--------
Q 026338 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETI----EDI-------- 73 (240)
Q Consensus 6 ~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fi----ee~-------- 73 (240)
++++..+||.= .| .+|++.++..-.++.+++- ..++||.|+---...++||||.|==++ ||-
T Consensus 37 ~~dL~~lLdSn---kd-~~KleAmKRIia~iA~G~d--vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSI 110 (968)
T KOG1060|consen 37 HDDLKQLLDSN---KD-SLKLEAMKRIIALIAKGKD--VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSI 110 (968)
T ss_pred hHHHHHHHhcc---cc-HHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeH
Confidence 56677777642 33 4899999999998875432 478889888766788899999764333 320
Q ss_pred --h---h------------------chhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHH
Q 026338 74 --G---L------------------KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (240)
Q Consensus 74 --~---~------------------~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~ 113 (240)
+ . +-+-..+-++-++....+|..|.|-|.|..+..-+|.+
T Consensus 111 ntfQk~L~DpN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL 173 (968)
T KOG1060|consen 111 NTFQKALKDPNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL 173 (968)
T ss_pred HHHHhhhcCCcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC
Confidence 0 0 12335666667777777888999999999999999975
No 38
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.61 E-value=10 Score=38.72 Aligned_cols=133 Identities=14% Similarity=0.083 Sum_probs=87.8
Q ss_pred HHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhh--hHHHHHHHHHHHhcCCChHHHHHHHHhhhh
Q 026338 32 VRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAME--HSSILMPVLLAFLRDGDSGVAGKSIVCGTN 109 (240)
Q Consensus 32 ~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e--~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~ 109 (240)
.|.+..=..+.+...+...+.....|.++.+||-++--++.....+++ +-.-.++.|..|+.|+||.|+-.|..+...
T Consensus 107 lrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~e 186 (734)
T KOG1061|consen 107 LRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSE 186 (734)
T ss_pred hhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHH
Confidence 444444445666677778788877888999999988877777665554 456678899999999999999887766544
Q ss_pred hh-------------HHHHHHHhhhhhccCCccchHHHHHHHHHHHHH-------------HHHHH---hccCCCCchHH
Q 026338 110 FF-------------CRVLEEITMQFRWHGKVERWLEELWTWMVRFKD-------------AVFAI---ALEPGLVGTKL 160 (240)
Q Consensus 110 lY-------------~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~-------------~Il~~---~~d~~n~Gvr~ 160 (240)
|- +.+...+-. -..-.-|....-++. +|+.. .+.+.|.+|=+
T Consensus 187 I~e~~~~~~~~~l~~~~~~~lL~a---------l~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvl 257 (734)
T KOG1061|consen 187 IHESHPSVNLLELNPQLINKLLEA---------LNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVL 257 (734)
T ss_pred HHHhCCCCCcccccHHHHHHHHHH---------HHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEe
Confidence 32 222211110 123455766665552 23332 45689999999
Q ss_pred HHHHHHhHHhhhc
Q 026338 161 LALKFLETHVLLF 173 (240)
Q Consensus 161 ~aiKF~e~vIl~q 173 (240)
.++|++=..+--.
T Consensus 258 savKv~l~~~~~~ 270 (734)
T KOG1061|consen 258 SAVKVILQLVKYL 270 (734)
T ss_pred ehHHHHHHHHHHH
Confidence 9999875444333
No 39
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=82.50 E-value=12 Score=41.13 Aligned_cols=83 Identities=17% Similarity=0.145 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhc-------CCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhh--HHHHHHHHHHHhcCCCh
Q 026338 27 SSLKQVRGILSS-------ADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH--SSILMPVLLAFLRDGDS 97 (240)
Q Consensus 27 ~~L~q~relll~-------~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~--~~~~v~~L~~LL~d~d~ 97 (240)
++=.++||-+++ -+|++.++|++.+.+=..|...-|||-++..++++|-..|.+ .+.+..-+..-.+||--
T Consensus 866 DssasVREAaldLvGrfvl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg 945 (1692)
T KOG1020|consen 866 DSSASVREAALDLVGRFVLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEG 945 (1692)
T ss_pred cchhHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchh
Confidence 344556665553 289999999999999889999999999999999999766554 22222222222346555
Q ss_pred HHHHHHHHhhhh
Q 026338 98 GVAGKSIVCGTN 109 (240)
Q Consensus 98 ~V~K~aI~~~t~ 109 (240)
.|.|-+-.++..
T Consensus 946 ~I~kLv~etf~k 957 (1692)
T KOG1020|consen 946 NIKKLVRETFLK 957 (1692)
T ss_pred HHHHHHHHHHHH
Confidence 566665555443
No 40
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=82.29 E-value=18 Score=37.81 Aligned_cols=51 Identities=16% Similarity=0.226 Sum_probs=31.2
Q ss_pred hcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhh
Q 026338 54 LQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (240)
Q Consensus 54 ~~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~l 110 (240)
.-.|++..||+..+..|.+++. ...++.|..+|+|+++.|-+.|+.+.+.+
T Consensus 815 aL~d~d~~VR~~Aa~aL~~l~~------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 815 ALRASAWQVRQGAARALAGAAA------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HhcCCChHHHHHHHHHHHhccc------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 3345566677766666654431 23345666667777777777777776663
No 41
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=81.21 E-value=56 Score=31.84 Aligned_cols=112 Identities=21% Similarity=0.219 Sum_probs=73.0
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhh-----hHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHH
Q 026338 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAEL-----FPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSIL 84 (240)
Q Consensus 10 ~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~-----l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~~ 84 (240)
+.++-.....+|....-...+-++++.- ++.-++.+ ++.+-.+-...+..+|.-+.+++-++++..++.+..+
T Consensus 121 ~~~i~~~L~~~d~~Va~~A~~~L~~l~~--~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~ 198 (503)
T PF10508_consen 121 LPLIIQCLRDPDLSVAKAAIKALKKLAS--HPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV 198 (503)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHhC--CchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3344444455666666667777777773 23222333 5555555444466788889999999998777665444
Q ss_pred H-----HHHHHHhcCCChHHHHHHHHhhhhh--hHHHHHHHhhhhh
Q 026338 85 M-----PVLLAFLRDGDSGVAGKSIVCGTNF--FCRVLEEITMQFR 123 (240)
Q Consensus 85 v-----~~L~~LL~d~d~~V~K~aI~~~t~l--Y~~~l~~~~~~~~ 123 (240)
. +.+...|+++|.-|...++...+.+ ++..++++..+++
T Consensus 199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi 244 (503)
T PF10508_consen 199 VNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGI 244 (503)
T ss_pred HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCH
Confidence 4 4555557789999999999888776 7777766655443
No 42
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.15 E-value=74 Score=34.42 Aligned_cols=147 Identities=16% Similarity=0.147 Sum_probs=90.3
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcCCC----chHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc---------
Q 026338 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADP----SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLK--------- 76 (240)
Q Consensus 10 ~~lln~A~~~~d~~~kl~~L~q~relll~~~p----~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~--------- 76 (240)
-+.|-+...+.+.+.|...|+-+.-++ ...| .+.+..+|+++=+..+-+..-|+---+.|-++|..
T Consensus 699 ~n~L~ds~qs~~~~~~~~rl~~L~~L~-~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e 777 (1176)
T KOG1248|consen 699 FNSLLDSFQSSSSPAQASRLKCLKRLL-KLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNE 777 (1176)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhccccc
Confidence 334444445555556666666666655 3444 68888899988666666777777777777777721
Q ss_pred -hhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCC
Q 026338 77 -AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGL 155 (240)
Q Consensus 77 -~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n 155 (240)
..+.+...+..|..-+-.+.+.++=..|.+.+.+|-. +- .++ + . +.+.++=+.|.. .+.+.+
T Consensus 778 ~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e---~~--~~l-d-------~---~~l~~li~~V~~-~L~s~s 840 (1176)
T KOG1248|consen 778 PASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE---FK--NIL-D-------D---ETLEKLISMVCL-YLASNS 840 (1176)
T ss_pred chHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH---Hh--ccc-c-------H---HHHHHHHHHHHH-HHhcCC
Confidence 1335666666665555444444443335555544432 11 111 0 1 234455566666 778999
Q ss_pred CchHHHHHHHHhHHhhhcc
Q 026338 156 VGTKLLALKFLETHVLLFT 174 (240)
Q Consensus 156 ~Gvr~~aiKF~e~vIl~qT 174 (240)
--|+-+||+|+-..|..++
T Consensus 841 reI~kaAI~fikvlv~~~p 859 (1176)
T KOG1248|consen 841 REIAKAAIGFIKVLVYKFP 859 (1176)
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 9999999999988887665
No 43
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=80.06 E-value=1.9 Score=27.76 Aligned_cols=35 Identities=17% Similarity=0.382 Sum_probs=26.5
Q ss_pred HhcCCCchH--HhhhHHHHhhcCCchhhHHHHHHHHH
Q 026338 36 LSSADPSLA--AELFPYLVELQSSPESLVRKSLIETI 70 (240)
Q Consensus 36 ll~~~p~ll--~~~l~~vl~~~~d~~~~vRk~~~~fi 70 (240)
+.+.||+++ +.+...+..--.|+++.||++..++|
T Consensus 6 iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 6 IVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 346888877 47777766667799999999988864
No 44
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.73 E-value=6.4 Score=40.25 Aligned_cols=80 Identities=24% Similarity=0.217 Sum_probs=64.1
Q ss_pred CCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhh-----------h
Q 026338 40 DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCG-----------T 108 (240)
Q Consensus 40 ~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~-----------t 108 (240)
-|+|...+-+.|+-+-+..-+-+||-.+-.+-.+|.++|+-+..+.+-|..=|+|+||+|+-.|+--. -
T Consensus 138 TpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 138 TPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred CchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence 37777888888877766666789999999999999999999999999999999999999986666433 3
Q ss_pred hhhHHHHHHHh
Q 026338 109 NFFCRVLEEIT 119 (240)
Q Consensus 109 ~lY~~~l~~~~ 119 (240)
++-|..|..+.
T Consensus 218 ~LAP~ffkllt 228 (877)
T KOG1059|consen 218 QLAPLFYKLLV 228 (877)
T ss_pred cccHHHHHHHh
Confidence 45566665554
No 45
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=78.20 E-value=3.9 Score=25.45 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHhhhhh
Q 026338 83 ILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (240)
Q Consensus 83 ~~v~~L~~LL~d~d~~V~K~aI~~~t~l 110 (240)
.+++.|..||+++++.|.+.+.-+..+|
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3577888999999999999999988876
No 46
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.10 E-value=15 Score=37.43 Aligned_cols=72 Identities=13% Similarity=0.184 Sum_probs=54.3
Q ss_pred chHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchh----hhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHH
Q 026338 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAM----EHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (240)
Q Consensus 42 ~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~----e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~ 113 (240)
..++-++|+.++|-..+++-+|.-...=+....-..+ -++-+-+++|..|-+|++|.|-|.+..++.-+...
T Consensus 170 rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 170 RPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred CchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence 4567899999999878888899877665544332333 35777888899999999999999998887665443
No 47
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.02 E-value=67 Score=33.41 Aligned_cols=149 Identities=13% Similarity=0.082 Sum_probs=92.1
Q ss_pred HHHHHHhhcC-CChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHH
Q 026338 10 LSLLAAANNH-GDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVL 88 (240)
Q Consensus 10 ~~lln~A~~~-~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L 88 (240)
-+|++.+... .|. ...+.|.=.+++-||+..-+++-+.++-.++-+..+.--+++||...|...++.-.+-+..+
T Consensus 173 peLi~~fL~~e~Dp----sCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i 248 (948)
T KOG1058|consen 173 PELIESFLLTEQDP----SCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCI 248 (948)
T ss_pred HHHHHHHHHhccCc----hhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHH
Confidence 4566666654 443 45677777788889976666666665544555678888999999999998887766667777
Q ss_pred HHHhcCCChHHH-------------HHHHHhhhhhhHHHHHHHhhhhhccCC------ccchHHHHHHHHHHHHHHHHHH
Q 026338 89 LAFLRDGDSGVA-------------GKSIVCGTNFFCRVLEEITMQFRWHGK------VERWLEELWTWMVRFKDAVFAI 149 (240)
Q Consensus 89 ~~LL~d~d~~V~-------------K~aI~~~t~lY~~~l~~~~~~~~~~~~------~~~~~~~~W~~m~~~K~~Il~~ 149 (240)
..+|..++++|+ -.++.++++-|-.++..... .+-+ ........=..|..+--+|++
T Consensus 249 ~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesd---nnvklIvldrl~~l~~~~~~il~~l~mDvLr- 324 (948)
T KOG1058|consen 249 YNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESD---NNVKLIVLDRLSELKALHEKILQGLIMDVLR- 324 (948)
T ss_pred HHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccC---cchhhhhHHHHHHHhhhhHHHHHHHHHHHHH-
Confidence 777766555443 23444455555444422221 1111 111112222345666677888
Q ss_pred hccCCCCchHHHHHHHH
Q 026338 150 ALEPGLVGTKLLALKFL 166 (240)
Q Consensus 150 ~~d~~n~Gvr~~aiKF~ 166 (240)
.+++.+..||--|+-|.
T Consensus 325 vLss~dldvr~Ktldi~ 341 (948)
T KOG1058|consen 325 VLSSPDLDVRSKTLDIA 341 (948)
T ss_pred HcCcccccHHHHHHHHH
Confidence 77888888887777664
No 48
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=75.93 E-value=31 Score=36.13 Aligned_cols=84 Identities=15% Similarity=0.124 Sum_probs=47.5
Q ss_pred HhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcC
Q 026338 15 AANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRD 94 (240)
Q Consensus 15 ~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d 94 (240)
++....|...+......+.++ .+ ++.+|.+...-.|++..||.-.++.+.++....+. .+.|..+|.+
T Consensus 628 ~~L~D~d~~VR~~Av~~L~~~---~~----~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-----~~~L~~~L~~ 695 (897)
T PRK13800 628 PYLADPDPGVRRTAVAVLTET---TP----PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-----APALRDHLGS 695 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhhh---cc----hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-----hHHHHHHhcC
Confidence 333345544444444444432 22 44555555555677888888888877766422111 1245556677
Q ss_pred CChHHHHHHHHhhhhh
Q 026338 95 GDSGVAGKSIVCGTNF 110 (240)
Q Consensus 95 ~d~~V~K~aI~~~t~l 110 (240)
+|+.|-..++.++..+
T Consensus 696 ~d~~VR~~A~~aL~~~ 711 (897)
T PRK13800 696 PDPVVRAAALDVLRAL 711 (897)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 7887777777766544
No 49
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=74.39 E-value=72 Score=31.72 Aligned_cols=106 Identities=14% Similarity=0.112 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhh----c-hhhh
Q 026338 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL----K-AMEH 80 (240)
Q Consensus 6 ~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~----~-~~e~ 80 (240)
+.++.+||..-..+-+. +=.....++==|+.+++--....+|.-.++++.-.+..+|+++-.-|-...+ + ..+-
T Consensus 18 P~el~dLL~~~~~~lp~-~Lr~~i~~~LiLLrNk~~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~~kn~k 96 (616)
T KOG2229|consen 18 PSELKDLLRTNHTVLPP-ELREKIVKALILLRNKNLIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKKHKNDK 96 (616)
T ss_pred hHHHHHHHHhccccCCH-HHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhcccch
Confidence 46788888887766332 3344555666677677543333444444445555566678887655544333 1 2233
Q ss_pred HHHHHH-HHHHHhcCCChHHHHHHHHhhhhhhH
Q 026338 81 SSILMP-VLLAFLRDGDSGVAGKSIVCGTNFFC 112 (240)
Q Consensus 81 ~~~~v~-~L~~LL~d~d~~V~K~aI~~~t~lY~ 112 (240)
+.+.+. .+..||+++|+.-.|.|.-++.-+|+
T Consensus 97 lnkslq~~~fsml~~~d~~~ak~a~~~~~eL~k 129 (616)
T KOG2229|consen 97 LNKSLQAFMFSMLDQSDSTAAKMALDTMIELYK 129 (616)
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Confidence 555554 45667899999999999999999998
No 50
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.45 E-value=6.6 Score=40.44 Aligned_cols=74 Identities=16% Similarity=0.323 Sum_probs=53.6
Q ss_pred hhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCC
Q 026338 77 AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLV 156 (240)
Q Consensus 77 ~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~ 156 (240)
-+|+++.+.|-+..++...+|.|-|+|++|+..+.|.+=+++- .-..+++..+. ..+.
T Consensus 136 s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e-----------------~f~~~~~~lL~-----ek~h 193 (866)
T KOG1062|consen 136 SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE-----------------HFVIAFRKLLC-----EKHH 193 (866)
T ss_pred CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH-----------------HhhHHHHHHHh-----hcCC
Confidence 4689999999999999999999999999998766664443331 11223343333 3668
Q ss_pred chHHHHHHHHhHHhhh
Q 026338 157 GTKLLALKFLETHVLL 172 (240)
Q Consensus 157 Gvr~~aiKF~e~vIl~ 172 (240)
||-+.+++++...+-.
T Consensus 194 GVL~~~l~l~~e~c~~ 209 (866)
T KOG1062|consen 194 GVLIAGLHLITELCKI 209 (866)
T ss_pred ceeeeHHHHHHHHHhc
Confidence 9998888888777655
No 51
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.11 E-value=64 Score=35.97 Aligned_cols=123 Identities=17% Similarity=0.135 Sum_probs=81.7
Q ss_pred hHHhhhHHHHhhc-CCchhhHHHHHHHHHHHHhhchh----hhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHH
Q 026338 43 LAAELFPYLVELQ-SSPESLVRKSLIETIEDIGLKAM----EHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEE 117 (240)
Q Consensus 43 ll~~~l~~vl~~~-~d~~~~vRk~~~~fiee~~~~~~----e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~ 117 (240)
.++.+||-+++-+ .+.-.+||||.++.+-+..+... -|++++++.|...+..-.|.|+-....-+.++=-.++|-
T Consensus 1127 ~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt 1206 (1702)
T KOG0915|consen 1127 ALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDT 1206 (1702)
T ss_pred HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHH
Confidence 5567777666543 23446999999999988766543 367888888877777667888766666556666666654
Q ss_pred HhhhhhccCCccchHHHHHHHHHHHH------------HHHHHHhccCCCCchHHHHHHHHhHHhhh
Q 026338 118 ITMQFRWHGKVERWLEELWTWMVRFK------------DAVFAIALEPGLVGTKLLALKFLETHVLL 172 (240)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~W~~m~~~K------------~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~ 172 (240)
.=.. ++ -...+|+++..+- -+++..+..+.+.|.|..|.-|+-.+++=
T Consensus 1207 ~R~s-~a------ksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r 1266 (1702)
T KOG0915|consen 1207 LRAS-AA------KSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQR 1266 (1702)
T ss_pred HHHh-hh------cCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHH
Confidence 4221 11 1255677665544 45556455689999999999999555543
No 52
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.88 E-value=78 Score=30.24 Aligned_cols=126 Identities=20% Similarity=0.280 Sum_probs=81.5
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchH----HhhhHHHHhhcCCchhhHHHHHHHHHHHH----hhch-hhh
Q 026338 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLA----AELFPYLVELQSSPESLVRKSLIETIEDI----GLKA-MEH 80 (240)
Q Consensus 10 ~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll----~~~l~~vl~~~~d~~~~vRk~~~~fiee~----~~~~-~e~ 80 (240)
-+||.+-+- .++..+-+.|..+++++.+ +|+.+ .++++.+.+...|.+..||.-...+++.+ |+.+ .-+
T Consensus 61 keLl~qlkH-hNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 61 KELLSQLKH-HNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHhhhcC-chHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 456666554 4455788999999999975 88644 47788888999999999999999988884 3334 224
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHh
Q 026338 81 SSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIA 150 (240)
Q Consensus 81 ~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~ 150 (240)
++-.++-+..-+..-.|.|. ..+..|=.++ +.+. .+.+....|.++..+++.|-..-
T Consensus 139 ~~l~~~yi~~AMThit~~i~-----~dslkfL~~L---l~~~-----~p~~~~~~~~il~n~~d~i~~~~ 195 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQ-----EDSLKFLSLL---LERY-----PDTFSRYASKILENFKDVISKLQ 195 (393)
T ss_pred HHHHHHHHHHHHhhccHHHH-----HhhHHHHHHH---HHHc-----ChHHHHHHHHHHHHHHHHHHHhh
Confidence 55556666665666556543 2222222222 1121 12556777888777877776543
No 53
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=70.46 E-value=1.2e+02 Score=30.86 Aligned_cols=145 Identities=14% Similarity=0.040 Sum_probs=90.6
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCC-chHHhhhHHHHhhcCCc--hhhHHHHHHHHHHHHhhchhhh
Q 026338 4 VSRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADP-SLAAELFPYLVELQSSP--ESLVRKSLIETIEDIGLKAMEH 80 (240)
Q Consensus 4 ~~~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p-~ll~~~l~~vl~~~~d~--~~~vRk~~~~fiee~~~~~~e~ 80 (240)
++.+.+...+|.++.. .+-.-.+++.+.++.-...= .-....+..+|..-..+ ...+-+|++.|++.--..+|+-
T Consensus 8 ~~~~s~~~if~k~Q~s--~aGhrk~~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg 85 (885)
T COG5218 8 SSLESMQLIFNKIQQS--SAGHRKSLAELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEG 85 (885)
T ss_pred HHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhh
Confidence 5678888999999876 23466778888887732211 11223444555553333 3578899999998777778876
Q ss_pred HHHHHHHHHHHhc---CCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCc
Q 026338 81 SSILMPVLLAFLR---DGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVG 157 (240)
Q Consensus 81 ~~~~v~~L~~LL~---d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~G 157 (240)
..-+-+++..+|+ ..|..|-||+.|-.+-+--.+= +-++.+. +.++..+....+|.+ ..
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~--------------eIDe~l~---N~L~ekl~~R~~DRE-~~ 147 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVR--------------EIDEVLA---NGLLEKLSERLFDRE-KA 147 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcc--------------hHHHHHH---HHHHHHHHHHHhcch-HH
Confidence 6666667777776 4578999998876543322111 3334443 346666766444433 46
Q ss_pred hHHHHHHHHhH
Q 026338 158 TKLLALKFLET 168 (240)
Q Consensus 158 vr~~aiKF~e~ 168 (240)
||+.|+|.+-+
T Consensus 148 VR~eAv~~L~~ 158 (885)
T COG5218 148 VRREAVKVLCY 158 (885)
T ss_pred HHHHHHHHHHH
Confidence 77777776543
No 54
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=70.22 E-value=38 Score=28.42 Aligned_cols=64 Identities=22% Similarity=0.349 Sum_probs=49.1
Q ss_pred hhcCCChHHHHHHHHHHHHHHhcC--CCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHH
Q 026338 16 ANNHGDLAVKLSSLKQVRGILSSA--DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSS 82 (240)
Q Consensus 16 A~~~~d~~~kl~~L~q~relll~~--~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~ 82 (240)
....+|...+...+.=++-.+-.+ +| -+.+|.++.+..|++..+|+-....+.+++.|++.++.
T Consensus 16 ~~~~~~~~vr~~Al~~l~~il~qGLvnP---~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 16 LCLSSDDSVRLAALQVLELILRQGLVNP---KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHhCCCHHHHHHHHHHHHHHHhcCCCCh---HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 444566556666665555555333 77 89999999999999999999999999999999887654
No 55
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=68.87 E-value=42 Score=36.71 Aligned_cols=110 Identities=15% Similarity=0.084 Sum_probs=83.5
Q ss_pred HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhc
Q 026338 45 AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRW 124 (240)
Q Consensus 45 ~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~ 124 (240)
.+|+-.-+-.....-..++...-+.|-+.-...++++..++|-|..=|..++..+-|.|+-..+-+|..-- .|+.
T Consensus 221 ~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~-----~~l~ 295 (1266)
T KOG1525|consen 221 ANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKD-----SQLS 295 (1266)
T ss_pred HHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcch-----hhhc
Confidence 45555543322224456777777888888888999999999999888888899999999999988887655 3332
Q ss_pred cCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhh
Q 026338 125 HGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLL 172 (240)
Q Consensus 125 ~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~ 172 (240)
+....+|..+.. .+-.....||+.|+++.....+.
T Consensus 296 -----~~~~~~~~~fl~--------r~~D~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 296 -----ETYDDLWSAFLG--------RFNDISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred -----ccchHHHHHHHH--------HhccCChhhhhhHHHHhHHHHhc
Confidence 456888987654 55678889999999999887766
No 56
>KOG1895 consensus mRNA cleavage and polyadenylation factor II complex, subunit PTA1 [RNA processing and modification]
Probab=67.48 E-value=3.5 Score=43.27 Aligned_cols=102 Identities=12% Similarity=0.015 Sum_probs=79.6
Q ss_pred hhhccCC-ccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhhccCCCCCcccccccCCCccccccccCC
Q 026338 121 QFRWHGK-VERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFTSDSNDFENFTKEGSKQTFNISWLSG 199 (240)
Q Consensus 121 ~~~~~~~-~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qT~~~~d~~~~~~~~~~~d~sl~~vP~ 199 (240)
.|-...+ .+...+.+|+.+...=..|.. ...+.+.|+++..++|+...|-++++.-.|...+++.. -+.+.+..+.
T Consensus 10 l~~~~~~~~~e~~~~l~el~~~~~~~i~~-~l~~~~~~i~~~~~~~~~~lv~~ls~~l~d~~~~r~~~--i~~~~d~~~s 86 (957)
T KOG1895|consen 10 LIDVSSSISDELLTELLELLELNDGLIRC-LLVEILLEIGLKDFELCNKLVETLSPYLEDNPIVRRQS--IIKGADVARS 86 (957)
T ss_pred HhcccccccHhHHHHHHHHHhCCcchhhh-hHHHHHhhhhHHHHHhhhhHHHHhhhhhcCchhhHHHH--Hhhhhhhhhh
Confidence 3333333 456789999999999999998 77899999999999999999999999877764443332 3567788899
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHh
Q 026338 200 GHPFLDPVSLTSEANRMLGTLMDLLQ 225 (240)
Q Consensus 200 ~Hp~l~~~~Le~Ea~~lL~~LL~~l~ 225 (240)
+|+-+..+-+-.|.+++.+.+=..+.
T Consensus 87 ~l~~i~~~~~~~~~~~~~~s~w~~~~ 112 (957)
T KOG1895|consen 87 NLEPIVLQFLHMEKNDLAESLWTAFH 112 (957)
T ss_pred ccHHHHHHHHhcchhHHHHHHHHHHH
Confidence 99999999888888777666655544
No 57
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=65.74 E-value=28 Score=25.64 Aligned_cols=64 Identities=17% Similarity=0.192 Sum_probs=45.0
Q ss_pred HhhhHHHHhh-cCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHh----cCCChHHHHHHHHhhh
Q 026338 45 AELFPYLVEL-QSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFL----RDGDSGVAGKSIVCGT 108 (240)
Q Consensus 45 ~~~l~~vl~~-~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL----~d~d~~V~K~aI~~~t 108 (240)
..||...... ...++.++|..+.+-+..+...+.+.+..-++++...+ .|++..+++.|.++..
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 4455555444 56678899999999998887766666555555555554 4778888888887764
No 58
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=64.77 E-value=58 Score=26.77 Aligned_cols=121 Identities=17% Similarity=0.077 Sum_probs=71.7
Q ss_pred CchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhch-hhh----HHHHHHHHHHHhc-CCChHHHHHHHHhhhhhhHHH
Q 026338 41 PSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA-MEH----SSILMPVLLAFLR-DGDSGVAGKSIVCGTNFFCRV 114 (240)
Q Consensus 41 p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~-~e~----~~~~v~~L~~LL~-d~d~~V~K~aI~~~t~lY~~~ 114 (240)
.+.++.+...+..+-.+++.+-|=.++.++..+|..- .+. ...-+..|..+|+ .+++.+.+.+|.+.+.+|..+
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 3466788888888767777777777777777766542 332 2233333444444 456788999999999999765
Q ss_pred HHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhhcc
Q 026338 115 LEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFT 174 (240)
Q Consensus 115 l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qT 174 (240)
- ++-- . .-|-.=..+..+=...++ +.+. ..+...|+..+..++..+.
T Consensus 100 ~-----~~p~---l--~Rei~tp~l~~~i~~ll~-l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 100 R-----GKPT---L--TREIATPNLPKFIQSLLQ-LLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred c-----CCCc---h--HHHHhhccHHHHHHHHHH-HHhc--cccHHHHHHHHHHHHHHCC
Confidence 5 2210 0 111112224444444455 2222 6667777777777777665
No 59
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=63.30 E-value=76 Score=29.18 Aligned_cols=101 Identities=20% Similarity=0.201 Sum_probs=64.8
Q ss_pred HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc-hhhhHHHHHHHHHHH---hcCCChHHHHHHHHhhhhhhHHHHHHHhh
Q 026338 45 AELFPYLVELQSSPESLVRKSLIETIEDIGLK-AMEHSSILMPVLLAF---LRDGDSGVAGKSIVCGTNFFCRVLEEITM 120 (240)
Q Consensus 45 ~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~-~~e~~~~~v~~L~~L---L~d~d~~V~K~aI~~~t~lY~~~l~~~~~ 120 (240)
+-+.|++++|-...+..||-.+.+++|.-... .+.+.+.+-+-+..+ |+|++..+..+++...-.++-.+= .
T Consensus 96 ~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~----~ 171 (307)
T PF04118_consen 96 PIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVG----D 171 (307)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcC----h
Confidence 56678888887788889999999999985532 224444444444444 567888888887776655543211 0
Q ss_pred hhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHh
Q 026338 121 QFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHV 170 (240)
Q Consensus 121 ~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vI 170 (240)
. ---+..|..+. .+..+|..|++|+.+-.
T Consensus 172 ~--------~F~~~lwl~ii-------------~sp~~Rl~al~~l~~~l 200 (307)
T PF04118_consen 172 K--------YFWQCLWLCII-------------TSPSRRLGALNYLLRRL 200 (307)
T ss_pred h--------HHHHHHHHHHh-------------cCcchhHHHHHHHHHhC
Confidence 0 01233443332 67889999999986654
No 60
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=59.27 E-value=1.2e+02 Score=26.92 Aligned_cols=136 Identities=15% Similarity=0.155 Sum_probs=81.6
Q ss_pred CChHHHHHHHHHHHHHHhcCC-CchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc-h--hh-hHHHHHHHHHHHhcC
Q 026338 20 GDLAVKLSSLKQVRGILSSAD-PSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLK-A--ME-HSSILMPVLLAFLRD 94 (240)
Q Consensus 20 ~d~~~kl~~L~q~relll~~~-p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~-~--~e-~~~~~v~~L~~LL~d 94 (240)
-|...|+.-|+-++.+-...+ ..++.+.+|.++.+-...+..+|-.+...+--.... + .+ +..+++..+..|++.
T Consensus 107 lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~ 186 (254)
T PF04826_consen 107 LNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNS 186 (254)
T ss_pred CCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHcc
Confidence 466678888888888865442 356677788877775566777888887777554322 1 12 244566677777775
Q ss_pred -CChHHHHHHHHhhhhhhHHHHHH--HhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchH
Q 026338 95 -GDSGVAGKSIVCGTNFFCRVLEE--ITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTK 159 (240)
Q Consensus 95 -~d~~V~K~aI~~~t~lY~~~l~~--~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr 159 (240)
++..++-+++.-+.+|....-.. ++.+|..+ ..+.-..|.-...+-+++.+ +.++...-||
T Consensus 187 ~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~---~~~L~~~~~e~~~~~~~l~~-l~~h~d~ev~ 250 (254)
T PF04826_consen 187 SESKENLLRVLTFFENINENIKKEAYVFVQDDFS---EDSLFSLFGESSQLAKKLQA-LANHPDPEVK 250 (254)
T ss_pred CCccHHHHHHHHHHHHHHHhhCcccceeccccCC---chhHHHHHccHHHHHHHHHH-HHcCCCHHHh
Confidence 47888999999888886644311 11122211 13334555555556666666 3344333343
No 61
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=57.69 E-value=15 Score=21.97 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=20.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHhhhhh
Q 026338 84 LMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (240)
Q Consensus 84 ~v~~L~~LL~d~d~~V~K~aI~~~t~l 110 (240)
+++.|..++..+++.+++.++.+..++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 456677777888888888888877665
No 62
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=57.19 E-value=79 Score=23.57 Aligned_cols=60 Identities=17% Similarity=0.031 Sum_probs=47.4
Q ss_pred CchhhHHHHHHHHHHHHhhc----hhhhHHHHHHHHHHHhcCCC--hHHHHHHHHhhhhhhHHHHH
Q 026338 57 SPESLVRKSLIETIEDIGLK----AMEHSSILMPVLLAFLRDGD--SGVAGKSIVCGTNFFCRVLE 116 (240)
Q Consensus 57 d~~~~vRk~~~~fiee~~~~----~~e~~~~~v~~L~~LL~d~d--~~V~K~aI~~~t~lY~~~l~ 116 (240)
+.+-++|.+-++++..+|++ .+.+-+++..++...+.|++ ..+.=-||.+...+=+.+.+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~~vr 82 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPEAVR 82 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34569999999999999975 46789999999999988764 45666778777777776663
No 63
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=56.82 E-value=89 Score=30.50 Aligned_cols=94 Identities=12% Similarity=0.079 Sum_probs=51.5
Q ss_pred hhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHH---hcCCChHHH---HHHHHhhhhhhHHHHHHHhhhhhccCCccchH
Q 026338 59 ESLVRKSLIETIEDIGLKAMEHSSILMPVLLAF---LRDGDSGVA---GKSIVCGTNFFCRVLEEITMQFRWHGKVERWL 132 (240)
Q Consensus 59 ~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~L---L~d~d~~V~---K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~ 132 (240)
+.++|.+.=+-|+.++++.++++..=+..+..| |.++++.|. ..|+.+.+..|+..-+
T Consensus 387 ~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~---------------- 450 (501)
T PF13001_consen 387 DIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPD---------------- 450 (501)
T ss_pred cHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhcccc----------------
Confidence 468999999999999988877653333333333 555555443 3333333444433221
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHH
Q 026338 133 EELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETH 169 (240)
Q Consensus 133 ~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~v 169 (240)
..=.........++....++....+|.+|+||+.++
T Consensus 451 -~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~ 486 (501)
T PF13001_consen 451 -DEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANAC 486 (501)
T ss_pred -chhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 000011112222333133456678999999999876
No 64
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=55.53 E-value=1.5e+02 Score=33.17 Aligned_cols=92 Identities=16% Similarity=0.174 Sum_probs=69.3
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCchH--HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCC
Q 026338 19 HGDLAVKLSSLKQVRGILSSADPSLA--AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGD 96 (240)
Q Consensus 19 ~~d~~~kl~~L~q~relll~~~p~ll--~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d 96 (240)
.+-.+-+...|+-+-.++ +.||..+ +.+...|-.=-.|.+.-||.-+.+++..-...++++..+--+.+..=..|..
T Consensus 827 e~~ialRtkAlKclS~iv-e~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i~erIlDtg 905 (1692)
T KOG1020|consen 827 ENAIALRTKALKCLSMIV-EADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQIIERILDTG 905 (1692)
T ss_pred CchHHHHHHHHHHHHHHH-hcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcCCCc
Confidence 344445667777777777 5899776 3444444333358888999999999998778889988888888888888999
Q ss_pred hHHHHHHHHhhhhhh
Q 026338 97 SGVAGKSIVCGTNFF 111 (240)
Q Consensus 97 ~~V~K~aI~~~t~lY 111 (240)
..|-||||.-.--+|
T Consensus 906 vsVRKRvIKIlrdic 920 (1692)
T KOG1020|consen 906 VSVRKRVIKILRDIC 920 (1692)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999998655444
No 65
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.32 E-value=43 Score=34.23 Aligned_cols=149 Identities=15% Similarity=0.152 Sum_probs=93.8
Q ss_pred CchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCC-ccchHHHH
Q 026338 57 SPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGK-VERWLEEL 135 (240)
Q Consensus 57 d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~-~~~~~~~~ 135 (240)
|.-.|||+-.+.=+.......|.+..++++-|-.|++||...|--++|-+++.|-... .++.. .+.-.+..
T Consensus 384 DEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l--------~i~eeql~~il~~L 455 (823)
T KOG2259|consen 384 DEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHL--------AIREEQLRQILESL 455 (823)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh--------eecHHHHHHHHHHH
Confidence 4456899988776666666789999999999999999999989888888887665431 11110 11223444
Q ss_pred HHHHHHHHHHHHHHhcc----CCCCchHHHHHHHHhHHhhhccCCCCCcccccccCCCcc--ccccccCCCCCCCChhhH
Q 026338 136 WTWMVRFKDAVFAIALE----PGLVGTKLLALKFLETHVLLFTSDSNDFENFTKEGSKQT--FNISWLSGGHPFLDPVSL 209 (240)
Q Consensus 136 W~~m~~~K~~Il~~~~d----~~n~Gvr~~aiKF~e~vIl~qT~~~~d~~~~~~~~~~~d--~sl~~vP~~Hp~l~~~~L 209 (240)
=+.+..++..+.. ++- ++-.++-+|..+.+.. .+.-+.| +++ -.+..+-.|||.+ +
T Consensus 456 ~D~s~dvRe~l~e-lL~~~~~~d~~~i~m~v~~lL~~----L~kyPqD---------rd~i~~cm~~iGqnH~~l----v 517 (823)
T KOG2259|consen 456 EDRSVDVREALRE-LLKNARVSDLECIDMCVAHLLKN----LGKYPQD---------RDEILRCMGRIGQNHRRL----V 517 (823)
T ss_pred HhcCHHHHHHHHH-HHHhcCCCcHHHHHHHHHHHHHH----hhhCCCC---------cHHHHHHHHHHhccChhh----H
Confidence 4555666666655 332 4445666655555422 2221211 112 2345677899865 6
Q ss_pred HHHHHHHHHHHHHHHhhhcCCC
Q 026338 210 TSEANRMLGTLMDLLQSACNLP 231 (240)
Q Consensus 210 e~Ea~~lL~~LL~~l~~~~~~~ 231 (240)
.+-+.++++....+-..++..-
T Consensus 518 ~s~m~rfl~kh~~f~t~e~s~e 539 (823)
T KOG2259|consen 518 LSNMGRFLEKHTSFATIEPSLE 539 (823)
T ss_pred HHHHHHHHHhcccccccCcccc
Confidence 6667788888877777666553
No 66
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.78 E-value=59 Score=33.40 Aligned_cols=77 Identities=18% Similarity=0.195 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhcCCCch---HHhhhHHHHhhcCCchhhHHHHHHHHHHHHhh----chhhhHHHHHHHHHHHhcCCCh
Q 026338 25 KLSSLKQVRGILSSADPSL---AAELFPYLVELQSSPESLVRKSLIETIEDIGL----KAMEHSSILMPVLLAFLRDGDS 97 (240)
Q Consensus 25 kl~~L~q~relll~~~p~l---l~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~----~~~e~~~~~v~~L~~LL~d~d~ 97 (240)
+-+.+.-+-..++-..-++ +|.|+..+..++.|.+++|||.+..-+--..- +-.-|+..+++-....-.|.|.
T Consensus 191 Rs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE 270 (885)
T KOG2023|consen 191 RSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDE 270 (885)
T ss_pred HHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcch
Confidence 3444555555555444443 38999999999999999999998754433222 2234667676666666667777
Q ss_pred HHHH
Q 026338 98 GVAG 101 (240)
Q Consensus 98 ~V~K 101 (240)
.|.=
T Consensus 271 ~VAL 274 (885)
T KOG2023|consen 271 NVAL 274 (885)
T ss_pred hHHH
Confidence 7653
No 67
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=54.56 E-value=2e+02 Score=28.78 Aligned_cols=144 Identities=13% Similarity=-0.011 Sum_probs=82.5
Q ss_pred CChHHHHHHHHHHHHHHhcCCCc-----hHHhhhHHHHhh------c----CCchhhHHHHHHHHHHHHhhc----hhhh
Q 026338 20 GDLAVKLSSLKQVRGILSSADPS-----LAAELFPYLVEL------Q----SSPESLVRKSLIETIEDIGLK----AMEH 80 (240)
Q Consensus 20 ~d~~~kl~~L~q~relll~~~p~-----ll~~~l~~vl~~------~----~d~~~~vRk~~~~fiee~~~~----~~e~ 80 (240)
+|. +.+-.|-++-.-++ ++|+ ++-+++|.++.- . .|..-.+|.|-+.|+..+|+. +..+
T Consensus 259 ~nL-~lL~~lm~m~rSLl-~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L 336 (576)
T KOG2549|consen 259 NNL-ELLIYLMRMVRSLL-DNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNL 336 (576)
T ss_pred ccH-HHHHHHHHHHHHHh-cCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 344 44444444444444 5554 446777777732 1 234458999999999999985 3457
Q ss_pred HHHHHHHHHHHhcCC--ChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHH-HHHHHHHhcc-CCCC
Q 026338 81 SSILMPVLLAFLRDG--DSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRF-KDAVFAIALE-PGLV 156 (240)
Q Consensus 81 ~~~~v~~L~~LL~d~--d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~-K~~Il~~~~d-~~n~ 156 (240)
-+++..++...+.|. +....=.+|.+..-+=..+. ..|+. +.....|..+..- -..+.+...+ -++.
T Consensus 337 ~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~~I----~~~il-----p~L~~~~~~l~~~l~~~~~~n~~~i~ea~ 407 (576)
T KOG2549|consen 337 QPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHEVI----RTVIL-----PNLKEYNERLQSVLDVESLSNQLDIYEAN 407 (576)
T ss_pred HHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhhhh----hheec-----cchHHHHHHhhhhcccchhhhhhhhhhhh
Confidence 899999999998876 33444444544444333333 12222 3356666554432 1111111112 3566
Q ss_pred chHHHHHHHHhHHhhhcc
Q 026338 157 GTKLLALKFLETHVLLFT 174 (240)
Q Consensus 157 Gvr~~aiKF~e~vIl~qT 174 (240)
+|+.+-.|-...+|.-+-
T Consensus 408 ~v~~~llk~~~~ii~~~l 425 (576)
T KOG2549|consen 408 KVYGALLKAENPIIRDKL 425 (576)
T ss_pred hHHHHHHHHhhHHHHhhh
Confidence 788888887777655444
No 68
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.06 E-value=2.1e+02 Score=28.38 Aligned_cols=115 Identities=10% Similarity=0.062 Sum_probs=75.9
Q ss_pred chHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhh----chhhhHHHHHH-HHHHHhcCCChHHHHHHHHhhhhhhHHHHH
Q 026338 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGL----KAMEHSSILMP-VLLAFLRDGDSGVAGKSIVCGTNFFCRVLE 116 (240)
Q Consensus 42 ~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~----~~~e~~~~~v~-~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~ 116 (240)
.++.+++-.+.+=+.|++.-+|.-.+.-|..... +...|-..+++ .++.|..+.+..|+=.++.|.+-+-+.+-
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~- 332 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS- 332 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh-
Confidence 4778888877777889998888887766655322 22334444444 35555666678888888888876655433
Q ss_pred HHhhhhhccCCccchHHHHHHHHHHHH---HHHHHHhccCCCCchHHHHHHHHhHHhhhccCC
Q 026338 117 EITMQFRWHGKVERWLEELWTWMVRFK---DAVFAIALEPGLVGTKLLALKFLETHVLLFTSD 176 (240)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~W~~m~~~K---~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qT~~ 176 (240)
.|+-+.-++ .++.. +|+++++-.|.+++-.....-.+-+++
T Consensus 333 ------------------~~~l~~~~l~ialrlR~-l~~se~~~~R~aa~~Lfg~L~~l~g~~ 376 (533)
T KOG2032|consen 333 ------------------NDDLESYLLNIALRLRT-LFDSEDDKMRAAAFVLFGALAKLAGGG 376 (533)
T ss_pred ------------------hcchhhhchhHHHHHHH-HHHhcChhhhhhHHHHHHHHHHHcCCC
Confidence 344444444 44445 889999999999997776665554443
No 69
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=50.83 E-value=30 Score=36.26 Aligned_cols=84 Identities=21% Similarity=0.180 Sum_probs=61.1
Q ss_pred HHHHHHH-HHHHHHhcCCCchHHhhhHHHH----hh-cCCchhhHHHHHHHHHHH-HhhchhhhHHHHHH------HHHH
Q 026338 24 VKLSSLK-QVRGILSSADPSLAAELFPYLV----EL-QSSPESLVRKSLIETIED-IGLKAMEHSSILMP------VLLA 90 (240)
Q Consensus 24 ~kl~~L~-q~relll~~~p~ll~~~l~~vl----~~-~~d~~~~vRk~~~~fiee-~~~~~~e~~~~~v~------~L~~ 90 (240)
.+-+.|+ .+|+-++.++|.+++.|.-.++ +. .+..++.||.-+..-|.. +++...+++..++. .+..
T Consensus 528 ~~~dkl~~~~r~~~l~nqpel~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG 607 (1051)
T KOG0168|consen 528 KQQDKLNGSAREGLLKNQPELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAG 607 (1051)
T ss_pred hhhhhcCCchhhhhhhcCHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHh
Confidence 4567788 8999999999998877755444 44 456788999999887776 46677777666554 5667
Q ss_pred HhcCCChHHHHHHHHhh
Q 026338 91 FLRDGDSGVAGKSIVCG 107 (240)
Q Consensus 91 LL~d~d~~V~K~aI~~~ 107 (240)
+|..+|+.|+=-|.|-+
T Consensus 608 ~lsskD~~vlVgALQvA 624 (1051)
T KOG0168|consen 608 MLSSKDLTVLVGALQVA 624 (1051)
T ss_pred hhhcCCCeeEeehHHHH
Confidence 77888887766666654
No 70
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=50.30 E-value=1.1e+02 Score=25.90 Aligned_cols=70 Identities=11% Similarity=0.166 Sum_probs=46.1
Q ss_pred hHHhhhHHHHhh-cCCchhhHHHHHHHHHHHHhh------------chhhhHHHHHHHHHHHhcCCCh-HHHHHHHHhhh
Q 026338 43 LAAELFPYLVEL-QSSPESLVRKSLIETIEDIGL------------KAMEHSSILMPVLLAFLRDGDS-GVAGKSIVCGT 108 (240)
Q Consensus 43 ll~~~l~~vl~~-~~d~~~~vRk~~~~fiee~~~------------~~~e~~~~~v~~L~~LL~d~d~-~V~K~aI~~~t 108 (240)
++++++|++... .+..+.+++.|+..|-.-.|. .-.++++.++.++..+++-+.. ..++|+..-+-
T Consensus 81 ~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~~~e 160 (174)
T PF04510_consen 81 FMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRGLRDFE 160 (174)
T ss_pred HHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 335555555433 233357899999988766552 1246889999999999886654 78877766555
Q ss_pred hhhH
Q 026338 109 NFFC 112 (240)
Q Consensus 109 ~lY~ 112 (240)
++.+
T Consensus 161 ~~v~ 164 (174)
T PF04510_consen 161 SFVS 164 (174)
T ss_pred HHHH
Confidence 5443
No 71
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=49.89 E-value=98 Score=27.76 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=44.6
Q ss_pred HHhhhHHHH-hhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhh
Q 026338 44 AAELFPYLV-ELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCG 107 (240)
Q Consensus 44 l~~~l~~vl-~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~ 107 (240)
+.++++.++ +--...+.++|++...-++-.|.-+.++...-++.+...+..+++.|.-.|+++.
T Consensus 24 l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l 88 (298)
T PF12719_consen 24 LESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKAL 88 (298)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 346666665 2223555699999999999999888888887777777777555666655555443
No 72
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=49.79 E-value=1.8e+02 Score=26.95 Aligned_cols=102 Identities=12% Similarity=0.155 Sum_probs=66.0
Q ss_pred CchhhHHHHHHHHHHHHhhchhhh--HHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHH
Q 026338 57 SPESLVRKSLIETIEDIGLKAMEH--SSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEE 134 (240)
Q Consensus 57 d~~~~vRk~~~~fiee~~~~~~e~--~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~ 134 (240)
.++.++..-+.+++...|.-.-|- ..+++. -+..+..+.|-+. -.+.+|..+.+.+. .+...+....
T Consensus 164 ~~s~Dl~~~~l~~l~~lmLAQAQE~~~~Ka~~-----~~~k~sliAKLa~-qv~~~Y~~a~~~l~-----~~~~~~~~~~ 232 (353)
T cd09246 164 FRTPDLTAECLGMLESLMLAQAQECFYEKAVA-----DGKSPAVCSKLAK-QARSYYEEALEALD-----SPPLKGHFDK 232 (353)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCccHHHHHHH-HHHHHHHHHHHHHh-----cccccccccH
Confidence 456677778888888877654442 222221 0223455566665 45679999995442 2223344578
Q ss_pred HHHHHHHHHHHHHHH---------hccCCCCchHHHHHHHHhHH
Q 026338 135 LWTWMVRFKDAVFAI---------ALEPGLVGTKLLALKFLETH 169 (240)
Q Consensus 135 ~W~~m~~~K~~Il~~---------~~d~~n~Gvr~~aiKF~e~v 169 (240)
.|..+..+|...+.- ..+.+..|..++..+..+..
T Consensus 233 ~W~~~~~~K~~~f~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~ 276 (353)
T cd09246 233 SWVAHVQLKAAYFRAEALYRAAKDLHEKEDIGEEIARLRAASDA 276 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhcchHHHHHHHHHHHHH
Confidence 999999999888652 22567899999999988663
No 73
>PF12335 SBF2: Myotubularin protein ; InterPro: IPR022096 This domain family is found in eukaryotes, and is approximately 220 amino acids in length. The family is found in association with PF02141 from PFAM, PF03456 from PFAM, PF03455 from PFAM. This family is the middle region of SBF2, a member of the myotubularin family. Myotubularin-related proteins have been suggested to work in phosphoinositide-mediated signalling events that may also convey control of myelination. Mutations of SBF2 are implicated in Charcot-Marie-Tooth disease.
Probab=48.99 E-value=1.5e+02 Score=26.11 Aligned_cols=92 Identities=15% Similarity=0.212 Sum_probs=67.1
Q ss_pred CChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchh-----hhHHHHHHHHHHHhcC
Q 026338 20 GDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAM-----EHSSILMPVLLAFLRD 94 (240)
Q Consensus 20 ~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~-----e~~~~~v~~L~~LL~d 94 (240)
.+.+.+++.|+..-..|+++-..-...++|.++.. =+....|.+++.++..-.+... +-+..++.-+...|.|
T Consensus 18 ~~s~rrlevlr~ci~~if~~k~~e~~k~~~av~~~--lk~~~aR~~~~~~L~~~~~~~k~~L~~~qF~~lv~lin~aLq~ 95 (225)
T PF12335_consen 18 ANSARRLEVLRNCISFIFDNKILEARKSLPAVLRA--LKSRSARQAFCRELSKHVKSNKAVLDDQQFDYLVRLINCALQD 95 (225)
T ss_pred hhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--HccchHHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHHHHH
Confidence 46668999999999999988777778889988763 3455689999999988665432 2344455555555654
Q ss_pred ----CChHHHHHHHHhhhhhhHH
Q 026338 95 ----GDSGVAGKSIVCGTNFFCR 113 (240)
Q Consensus 95 ----~d~~V~K~aI~~~t~lY~~ 113 (240)
+|-.+++...-..+.+||.
T Consensus 96 ~s~~dd~~~Aa~LL~ls~~fyrk 118 (225)
T PF12335_consen 96 CSESDDYGIAAALLPLSTAFYRK 118 (225)
T ss_pred HHhccchHHHHHHHHHHHHHHHH
Confidence 3567888877777888886
No 74
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=48.35 E-value=1.1e+02 Score=24.20 Aligned_cols=31 Identities=13% Similarity=0.108 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhccCCCCchHHHHHHHHhHHhh
Q 026338 140 VRFKDAVFAIALEPGLVGTKLLALKFLETHVL 171 (240)
Q Consensus 140 ~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl 171 (240)
...|..|.. +..+.|.-||=.|++-+|.++.
T Consensus 85 lg~K~~vM~-Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 85 LGAKERVME-LMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HSHHHHHHH-HTS-SSHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHH-HhcCCCHHHHHHHHHHHHHHHH
Confidence 348999999 6699999999999999999864
No 75
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=47.45 E-value=1.4e+02 Score=27.67 Aligned_cols=99 Identities=16% Similarity=0.226 Sum_probs=63.4
Q ss_pred chhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcC-CChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHH
Q 026338 58 PESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRD-GDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELW 136 (240)
Q Consensus 58 ~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d-~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W 136 (240)
++.++..-+.+++...|.-.-|-+- ........ .+..+.|-+.++ +.+|..+++.+- .+ +.....|
T Consensus 158 ~s~Dl~~~~l~~L~~lmLAQAQE~~----~~Kai~~~~k~sliAKLa~qv-~~~Y~~a~~~l~-----~~---~~i~~~W 224 (355)
T cd09241 158 PPPDLDENTLKALESLMLAQAQECF----WQKAISDGTKDSLIAKLAAQV-SDYYQEALKYAN-----KS---DLIRSDW 224 (355)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH----HHHHHhcCCcchHHHHHHHHH-HHHHHHHHHHHh-----cC---CcccHHH
Confidence 6677777788888877764433221 11111122 344555666555 789999994442 22 4457899
Q ss_pred HHHHHHHHHHHHH---------hccCCCCchHHHHHHHHhHH
Q 026338 137 TWMVRFKDAVFAI---------ALEPGLVGTKLLALKFLETH 169 (240)
Q Consensus 137 ~~m~~~K~~Il~~---------~~d~~n~Gvr~~aiKF~e~v 169 (240)
..+..+|...+.- ..+.+..|..++..|.....
T Consensus 225 ~~~v~~K~~~f~A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~~ 266 (355)
T cd09241 225 INHLKVKKHHFKAAAHYRMALVALEKSKYGEEVARLRVALAA 266 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999888642 22457889999988877664
No 76
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.64 E-value=2.2e+02 Score=28.84 Aligned_cols=105 Identities=10% Similarity=0.144 Sum_probs=67.4
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhcCCCc----hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhh-hHHHHH
Q 026338 11 SLLAAANNHGDLAVKLSSLKQVRGILSSADPS----LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAME-HSSILM 85 (240)
Q Consensus 11 ~lln~A~~~~d~~~kl~~L~q~relll~~~p~----ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e-~~~~~v 85 (240)
+-|..=........|+..|+=..-+. ++.|. ..+++++.+|..-+|++.+|=-...+.+..+|..... +..+.+
T Consensus 339 ~vl~~~l~~~~~~tri~~L~Wi~~l~-~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl 417 (675)
T KOG0212|consen 339 EVLTKYLSDDREETRIAVLNWIILLY-HKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFL 417 (675)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHH-hhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHH
Confidence 33333334445567888998888766 68885 3488899898877899998888888999999975433 444444
Q ss_pred HHHHHHhcCCC-------hHHHHHH--HHhhhhhhHHHHH
Q 026338 86 PVLLAFLRDGD-------SGVAGKS--IVCGTNFFCRVLE 116 (240)
Q Consensus 86 ~~L~~LL~d~d-------~~V~K~a--I~~~t~lY~~~l~ 116 (240)
..|..+...+. +-++|+- ..-+..+|+..-+
T Consensus 418 ~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ 457 (675)
T KOG0212|consen 418 LSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIAD 457 (675)
T ss_pred HHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHH
Confidence 45555544433 3334432 2334667776543
No 77
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=44.06 E-value=2.2e+02 Score=24.87 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=29.8
Q ss_pred HhhchhhhHHHHHHHHHHHhcCC----ChHHHHHHHHhhhhhhHHHH
Q 026338 73 IGLKAMEHSSILMPVLLAFLRDG----DSGVAGKSIVCGTNFFCRVL 115 (240)
Q Consensus 73 ~~~~~~e~~~~~v~~L~~LL~d~----d~~V~K~aI~~~t~lY~~~l 115 (240)
+.+++|++.++++++|..+-.+. .+...|..+.+.--.||..|
T Consensus 143 Iak~RP~~~~~Il~~ll~~~~~~~~~~~~~~~~~~v~sv~k~lk~~l 189 (239)
T PF11935_consen 143 IAKQRPQFMSRILPALLSFNPNLSPMQPPTLSKLQVKSVEKTLKIFL 189 (239)
T ss_dssp HHHHSGGGHHHHHHHHHHHHHS------TTCSHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhcCccccccCCccchHHHHHHHHHHHHHHH
Confidence 44678888888888888875544 45556666677777777777
No 78
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=43.89 E-value=1.7e+02 Score=28.01 Aligned_cols=16 Identities=19% Similarity=0.121 Sum_probs=6.3
Q ss_pred hcCCChHHHHHHHHhh
Q 026338 92 LRDGDSGVAGKSIVCG 107 (240)
Q Consensus 92 L~d~d~~V~K~aI~~~ 107 (240)
|+|+|+.|...++.+.
T Consensus 156 L~d~d~~Vra~A~raL 171 (410)
T TIGR02270 156 LTHEDALVRAAALRAL 171 (410)
T ss_pred hcCCCHHHHHHHHHHH
Confidence 3344444444433333
No 79
>PF07540 NOC3p: Nucleolar complex-associated protein; InterPro: IPR011501 Nucleolar complex-associated protein (Noc3p, Q07896 from SWISSPROT) is conserved in eukaryotes and plays essential roles in replication and rRNA processing in Saccharomyces cerevisiae [].
Probab=42.87 E-value=1.2e+02 Score=23.08 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCC-ChHHHHHHHHhhhhhhHHHH
Q 026338 63 RKSLIETIEDIGLKAMEHSSILMPVLLAFLRDG-DSGVAGKSIVCGTNFFCRVL 115 (240)
Q Consensus 63 Rk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~-d~~V~K~aI~~~t~lY~~~l 115 (240)
|..++.+...+.. +||--...+..|..+..+. +..|.|-|+.+...+|+-++
T Consensus 5 K~~IA~l~~~ile-~PE~ni~~lk~l~~~~~~~~~~~v~kLa~lSl~~VFkDIi 57 (95)
T PF07540_consen 5 KEEIASLASSILE-DPEENIGSLKRLLKLCESKVDVTVRKLAILSLLAVFKDII 57 (95)
T ss_pred HHHHHHHHHHHHH-CHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcC
Confidence 3444444444433 5554444567788888888 89999999999999888665
No 80
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.71 E-value=1.4e+02 Score=30.15 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=51.7
Q ss_pred HHHHHhcCCCc-hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHh----hchhhhHHHHHHHHHHHhcCCChHHHH
Q 026338 32 VRGILSSADPS-LAAELFPYLVELQSSPESLVRKSLIETIEDIG----LKAMEHSSILMPVLLAFLRDGDSGVAG 101 (240)
Q Consensus 32 ~relll~~~p~-ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~----~~~~e~~~~~v~~L~~LL~d~d~~V~K 101 (240)
.++.+.+.++. =+++|+|=+=+--...++..|.|+++.|.-.- .....|++..++-|..+|.|+.+.|..
T Consensus 152 ikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~ 226 (675)
T KOG0212|consen 152 IKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRT 226 (675)
T ss_pred HHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHH
Confidence 45666666654 45888885545556678899999999996542 234568999999999999999987763
No 81
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.96 E-value=97 Score=32.11 Aligned_cols=128 Identities=20% Similarity=0.241 Sum_probs=78.1
Q ss_pred CChHHHHHHHHHHHHHHhcCCCc----hHHhhhHHHHh-------------hcC--CchhhHHHHHHHHHHHHhh-----
Q 026338 20 GDLAVKLSSLKQVRGILSSADPS----LAAELFPYLVE-------------LQS--SPESLVRKSLIETIEDIGL----- 75 (240)
Q Consensus 20 ~d~~~kl~~L~q~relll~~~p~----ll~~~l~~vl~-------------~~~--d~~~~vRk~~~~fiee~~~----- 75 (240)
+|...+-...+=.=||+ .++|. |.|.||.=+.. |+. .-.+.++|-+++=|.+.-.
T Consensus 193 pDp~V~SAAV~VICELA-rKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~Am 271 (877)
T KOG1059|consen 193 PDPSVVSAAVSVICELA-RKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAM 271 (877)
T ss_pred CCchHHHHHHHHHHHHH-hhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHH
Confidence 55545555556666777 58884 56777763321 111 1135666666654433210
Q ss_pred --------------------chhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHH
Q 026338 76 --------------------KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEEL 135 (240)
Q Consensus 76 --------------------~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~ 135 (240)
.+..-+.-|++-|+.++.|.|+..-=-+..|++-+ ++. ..
T Consensus 272 SLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI--------~kt------------Hp 331 (877)
T KOG1059|consen 272 SLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKI--------LKT------------HP 331 (877)
T ss_pred HHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHH--------hhh------------CH
Confidence 12334667778888888888887654444443322 222 12
Q ss_pred HHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHh
Q 026338 136 WTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHV 170 (240)
Q Consensus 136 W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vI 170 (240)
..+.+.|+-|++ .++...+.||+-|+-.+...|
T Consensus 332 -~~Vqa~kdlIlr-cL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 332 -KAVQAHKDLILR-CLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred -HHHHHhHHHHHH-HhccCCchhHHHHHHHHHHHh
Confidence 246778999999 669999999999998876654
No 82
>PF09424 YqeY: Yqey-like protein; InterPro: IPR019004 Putative protein of unknown function; the authentic protein is detected in highly purified mitochondria in high-throughput studies; YOR215C is not an essential gene. ; PDB: 1NG6_A.
Probab=41.71 E-value=89 Score=25.39 Aligned_cols=48 Identities=23% Similarity=0.365 Sum_probs=32.4
Q ss_pred chHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcC
Q 026338 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRD 94 (240)
Q Consensus 42 ~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d 94 (240)
.++.+|||.- =...+++.++.++|++++...+....+++..+..-+..
T Consensus 81 ~iL~~yLP~~-----lseeEi~~~v~~~i~e~ga~~~k~mG~vMk~l~~~~~G 128 (143)
T PF09424_consen 81 EILEEYLPKQ-----LSEEEIEAIVEEAIAELGASSMKDMGKVMKALMAKLKG 128 (143)
T ss_dssp HHHGGGS----------HHHHHHHHHHHHHHTT--BGGGHHHHHHHHHHHHTT
T ss_pred HHHHHhCcCC-----CCHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCC
Confidence 3556777753 23558999999999999877777888888888766553
No 83
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=41.57 E-value=2.6e+02 Score=28.41 Aligned_cols=96 Identities=21% Similarity=0.133 Sum_probs=54.2
Q ss_pred CChHHHHH---HHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCC
Q 026338 20 GDLAVKLS---SLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGD 96 (240)
Q Consensus 20 ~d~~~kl~---~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d 96 (240)
.+..++++ -|-++--.+-++.|..+.-++|.+..+-....++=+-.+-.+.--+..+.++.+.+++|.|..-+.|.+
T Consensus 170 v~~~siLSgn~~LLrvlS~Vye~~P~~i~PhlP~l~~lL~q~~p~~~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds~ 249 (851)
T KOG3723|consen 170 VIVKSILSGNTMLLRVLSAVYEKQPQPINPHLPELLALLSQLEPEQYHLLRLLHVLIKQKQLEVLQKCIPFLIGHLKDST 249 (851)
T ss_pred HHHHHHhccchHHHHHHHHHHhcCCCccCcccHHHHHHhcCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcccc
Confidence 44555655 233344444457777665666666555334443333333333334566789999999999998888765
Q ss_pred h-----HHHHHHHHhhhhhhHHHH
Q 026338 97 S-----GVAGKSIVCGTNFFCRVL 115 (240)
Q Consensus 97 ~-----~V~K~aI~~~t~lY~~~l 115 (240)
. .+.|..-+-.-..-+..|
T Consensus 250 ~~~i~~~Ilk~ia~~~pv~l~~~~ 273 (851)
T KOG3723|consen 250 HNDIILNILKEIAVYEPVALNSFL 273 (851)
T ss_pred chhHHHHHHHHHHhcCccchhhHH
Confidence 3 445554444433333333
No 84
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=41.42 E-value=2.2e+02 Score=26.84 Aligned_cols=60 Identities=20% Similarity=0.306 Sum_probs=47.7
Q ss_pred ChHHHHHHHHHHHHHHhcC-CCc-hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhh
Q 026338 21 DLAVKLSSLKQVRGILSSA-DPS-LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH 80 (240)
Q Consensus 21 d~~~kl~~L~q~relll~~-~p~-ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~ 80 (240)
...||.+.|+=+|.++.-+ .|. +-..++-.+++.+.+++..+|.-+.+.+.|++..+|++
T Consensus 81 ~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~l 142 (371)
T PF14664_consen 81 NDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPEL 142 (371)
T ss_pred ChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHH
Confidence 3459999999999999653 453 44677778888888888899999999999998766653
No 85
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=40.54 E-value=2.3e+02 Score=30.49 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=74.4
Q ss_pred hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc-----hhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHH
Q 026338 43 LAAELFPYLVELQSSPESLVRKSLIETIEDIGLK-----AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEE 117 (240)
Q Consensus 43 ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~-----~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~ 117 (240)
.+.+++|++..|---..-.+|--...++.+..+. ..+.+..++.-+..|+.+.|-.|...++.+.+.+...-.
T Consensus 648 ~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~p-- 725 (1233)
T KOG1824|consen 648 VLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQP-- 725 (1233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccc--
Confidence 3456666666654333334555555555554432 345677777788888888888888888877766543211
Q ss_pred HhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccC-CCCchHHHHHHHHhHHhhhccCC
Q 026338 118 ITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEP-GLVGTKLLALKFLETHVLLFTSD 176 (240)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~-~n~Gvr~~aiKF~e~vIl~qT~~ 176 (240)
...-..++.+=+.|+.++..+ -..|.--++.+|.+..|....++
T Consensus 726 ---------------s~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~ 770 (1233)
T KOG1824|consen 726 ---------------SSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPD 770 (1233)
T ss_pred ---------------HHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCC
Confidence 233444555777777744332 34677788999999988887765
No 86
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=40.20 E-value=1.4e+02 Score=21.86 Aligned_cols=48 Identities=19% Similarity=0.189 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHH
Q 026338 22 LAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIED 72 (240)
Q Consensus 22 ~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee 72 (240)
..+.+..|++|..++.. .+..+.+.+.++.+-. ..++++ +.+++||+.
T Consensus 29 s~~~i~~l~~ayr~l~~-~~~~~~~a~~~l~~~~-~~~~~v-~~~~~Fi~~ 76 (83)
T PF13720_consen 29 SKEEISALRRAYRILFR-SGLTLEEALEELEEEY-PDSPEV-REIVDFIRN 76 (83)
T ss_dssp -HHHHHHHHHHHHHHHT-SSS-HHHHHHHHHHHT-TSCHHH-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHhc-cCCHHH-HHHHHHHHh
Confidence 34799999999999985 4467778888876522 224444 456688863
No 87
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.16 E-value=61 Score=33.71 Aligned_cols=71 Identities=17% Similarity=0.159 Sum_probs=52.9
Q ss_pred CCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhh
Q 026338 40 DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (240)
Q Consensus 40 ~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~l 110 (240)
.|++.+.+.|+|-++-..++.-+||-.+--...+-++.|++....++.-+.+|.+.+++|.=.++.-++.+
T Consensus 136 s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~ 206 (866)
T KOG1062|consen 136 SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITEL 206 (866)
T ss_pred CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHH
Confidence 57788888888888755677888887765555556788998888888999999998887765544444333
No 88
>PF11099 M11L: Apoptosis regulator M11L like; InterPro: IPR021119 This entry includes the poxvirus familes F1 and C10. C10 proteins are apoptosis regulators, which function to modulate the apoptotic cascades and thereby favour productive viral replication. One of these, M11L inhibits mitochondrial-dependent apoptosis by mimicking and competing with host proteins for the binding and blocking of Bak and Bax, two executioner proteins []. The poxvirus F1 family are a family of conserved proteins related to Vaccinia virus protein F1L. They have no known function.; PDB: 2O42_B 2JBY_A 2JBX_B 2VTY_A.
Probab=39.35 E-value=30 Score=29.09 Aligned_cols=57 Identities=14% Similarity=0.089 Sum_probs=37.3
Q ss_pred hhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhh
Q 026338 108 TNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLL 172 (240)
Q Consensus 108 t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~ 172 (240)
..=|+.=|..+|..--. + ..+. ....+|..|...+.+....|||++++-|+..++=-
T Consensus 39 ~~~Y~~d~n~mcd~i~~-~-----~~S~--~I~~Ikn~v~~~L~~D~rpsVkLAtISLiS~I~~k 95 (167)
T PF11099_consen 39 KNDYKRDFNSMCDIIEA-N-----DISY--NIDDIKNEVIEILLSDNRPSVKLATISLISIIIEK 95 (167)
T ss_dssp HHHTHHHHHHHHHHHHC-C-----CCTT---HHHHHHHHHHHCCHT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHhc-c-----cccc--cHHHHHHHHHHHHhccCCCceeehHHHHHHHHHHH
Confidence 44577778777763221 1 1122 56678999988565677799999999999887643
No 89
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=38.33 E-value=2.4e+02 Score=26.38 Aligned_cols=83 Identities=13% Similarity=0.257 Sum_probs=51.9
Q ss_pred hcCCchhhHHHHHHHHHHHHhhch-hhhHHHHHHHHHHHhcCC---ChH-----HHHHHHHhhhhhhHHHHHHHhhhhhc
Q 026338 54 LQSSPESLVRKSLIETIEDIGLKA-MEHSSILMPVLLAFLRDG---DSG-----VAGKSIVCGTNFFCRVLEEITMQFRW 124 (240)
Q Consensus 54 ~~~d~~~~vRk~~~~fiee~~~~~-~e~~~~~v~~L~~LL~d~---d~~-----V~K~aI~~~t~lY~~~l~~~~~~~~~ 124 (240)
|.+.++.++..-+.+++...|.-. .|.+ +...+.|. +.. +.|-+.++ +.+|..+.+.+ .
T Consensus 152 ~~~~ps~Dls~~~L~~L~~LmLAQAQEc~------~~Kai~d~~~k~~~~~~~~lAklA~qv-~~~Y~~a~~~~-----~ 219 (350)
T cd09244 152 FSNAPSMDLSPEMLEALIKLMLAQAQECV------FEKLVLPGEDSKDIQACLDLAQEAAQV-SDCYSEVHKLM-----N 219 (350)
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHH------HHHHHhccccccchhHHHHHHHHHHHH-HHHHHHHHHHH-----h
Confidence 445566677777777777776533 3321 11111222 222 67778888 89999999443 2
Q ss_pred cCCccchHHHHHHHHHHHHHHHHH
Q 026338 125 HGKVERWLEELWTWMVRFKDAVFA 148 (240)
Q Consensus 125 ~~~~~~~~~~~W~~m~~~K~~Il~ 148 (240)
.+.+.......|..+..+|...+.
T Consensus 220 ~~~~~~~i~~~W~~~v~~K~~~f~ 243 (350)
T cd09244 220 QEPVKDYIPYSWISLVEVKSEHYK 243 (350)
T ss_pred ccccccccCHHHHHHHHHHHHHHH
Confidence 333445567899999999988763
No 90
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=37.70 E-value=3e+02 Score=25.83 Aligned_cols=94 Identities=15% Similarity=0.147 Sum_probs=58.8
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCc--hH-HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHH-----HHHHHHHH
Q 026338 19 HGDLAVKLSSLKQVRGILSSADPS--LA-AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSS-----ILMPVLLA 90 (240)
Q Consensus 19 ~~d~~~kl~~L~q~relll~~~p~--ll-~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~-----~~v~~L~~ 90 (240)
+.|..+|...|-..++++.+=|-+ |. -+.++.++.+-.+.+.+||..-+..|..+....|.--. ..+..|..
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 377889999999999999653321 22 34555566665688899999999999987754332111 12334555
Q ss_pred HhcCCChHHH-HHHHHhhhhhhH
Q 026338 91 FLRDGDSGVA-GKSIVCGTNFFC 112 (240)
Q Consensus 91 LL~d~d~~V~-K~aI~~~t~lY~ 112 (240)
.|..++|.-+ ++|.-+.+++.|
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIR 196 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIR 196 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHh
Confidence 5554444444 555555566655
No 91
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=37.64 E-value=3.5e+02 Score=25.29 Aligned_cols=105 Identities=16% Similarity=0.193 Sum_probs=60.3
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcC--CchhhHHHHHHHHHHHHhhchhhhHHHH
Q 026338 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQS--SPESLVRKSLIETIEDIGLKAMEHSSIL 84 (240)
Q Consensus 7 ~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~--d~~~~vRk~~~~fiee~~~~~~e~~~~~ 84 (240)
+++++-|......+.. -.+.++++-|.+++-+- +.++.+++.+. ..++++...+.+|++. ..+..+++..+
T Consensus 13 ~~~i~sl~~~~~~~s~--s~~s~~~~t~~Lle~~Q----evv~~ile~~~di~~~~~L~~Lv~~YFd~-S~~a~~~C~~L 85 (336)
T PF05055_consen 13 NRVISSLATGVETRSL--SFDSLKEVTECLLEMNQ----EVVKVILECKKDIWKNPELFRLVSDYFDS-SLEASDFCEAL 85 (336)
T ss_pred HHHHHHhhhccccCCC--ChHHHHHHHHHHhCCCh----HHHHHHHHHHHHhhcChhHHHHHHHHHHh-hHHHHHHHHHH
Confidence 3445555444433332 28899999999986665 56666666653 3678999999999964 33333333333
Q ss_pred HHHHHHHhcCCChHHHHHHHHhh------------hhhhHHHHHHHhh
Q 026338 85 MPVLLAFLRDGDSGVAGKSIVCG------------TNFFCRVLEEITM 120 (240)
Q Consensus 85 v~~L~~LL~d~d~~V~K~aI~~~------------t~lY~~~l~~~~~ 120 (240)
...+...=. +-..++++++.+ .+-|..+|+++..
T Consensus 86 ~k~I~~aR~--~~~~I~~al~~~~~e~~~~d~g~~~~~~~~tl~eL~~ 131 (336)
T PF05055_consen 86 LKCIHRARD--NYLPIRRALKQFEKESLDTDVGVSQKKYDKTLEELKK 131 (336)
T ss_pred HHHHHHHHH--HhHHHHHHHHhhhhccccccccccchhHHHHHHHHHh
Confidence 333322111 123344444432 4667777777763
No 92
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=37.41 E-value=4.2e+02 Score=27.16 Aligned_cols=122 Identities=16% Similarity=0.104 Sum_probs=67.1
Q ss_pred HhcCCCchHHhhhHHHHhh--c---CCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHH---HhcCCChHHHHHHHHhh
Q 026338 36 LSSADPSLAAELFPYLVEL--Q---SSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLA---FLRDGDSGVAGKSIVCG 107 (240)
Q Consensus 36 ll~~~p~ll~~~l~~vl~~--~---~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~---LL~d~d~~V~K~aI~~~ 107 (240)
+...+|+++..++..+... - .|-+.-+|--..-=+..-|...|+++.+.. -+++ +|.|....|-+.+..
T Consensus 260 l~~ln~sl~~d~i~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~-~lry~GW~LSDn~~~vRl~v~K-- 336 (740)
T COG5537 260 LYDLNPSLIRDEIKDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKIL-GLRYNGWSLSDNHEGVRLLVSK-- 336 (740)
T ss_pred HHhhcchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhh-cccccccccccchHHHHHHHHH--
Confidence 3345787754444444321 1 244445554444444444455666655544 3333 256777776655432
Q ss_pred hhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhhcc
Q 026338 108 TNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFT 174 (240)
Q Consensus 108 t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qT 174 (240)
+ +.++|-+ + +.-...=.-+..||++|+....-..+. ||+|++|-++..=.+-.
T Consensus 337 --i----l~~L~s~-~------p~~d~ir~f~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~lg~ 389 (740)
T COG5537 337 --I----LLFLCSR-I------PHTDAIRRFVERFKDRILEFLRTDSDC-VRICSIKSLCYLRILGV 389 (740)
T ss_pred --H----HHHHHhc-C------CcchHHHHHHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHhcc
Confidence 2 3222222 1 111255567788999999955444444 99999999987655544
No 93
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.72 E-value=5.9e+02 Score=27.71 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=16.6
Q ss_pred cCCCCchHHHHHHHHhHHhhhcc
Q 026338 152 EPGLVGTKLLALKFLETHVLLFT 174 (240)
Q Consensus 152 d~~n~Gvr~~aiKF~e~vIl~qT 174 (240)
|++.. ||+.|++-+-.++....
T Consensus 170 d~s~~-vr~~a~rA~~a~~~~~~ 191 (1075)
T KOG2171|consen 170 DPSSP-VRVAAVRALGAFAEYLE 191 (1075)
T ss_pred CCcch-HHHHHHHHHHHHHHHhc
Confidence 44444 99999999888877664
No 94
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=35.96 E-value=54 Score=35.18 Aligned_cols=80 Identities=23% Similarity=0.277 Sum_probs=63.5
Q ss_pred HHHHhcCCCchHHhhhHHHH-hhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhh
Q 026338 33 RGILSSADPSLAAELFPYLV-ELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (240)
Q Consensus 33 relll~~~p~ll~~~l~~vl-~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY 111 (240)
-++.+ .+-.|+..++|.+. +++......+|.-++=-+.++|..++-+.-+-+|.+.+-|.|.++.|-|+.|--.+.+.
T Consensus 956 akmcL-ah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLL 1034 (1529)
T KOG0413|consen 956 AKMCL-AHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRRQTIILLARLL 1034 (1529)
T ss_pred HHHHh-hhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 34444 34456666777655 66777788899999888999999999888888999999999999999999888777765
Q ss_pred HH
Q 026338 112 CR 113 (240)
Q Consensus 112 ~~ 113 (240)
..
T Consensus 1035 q~ 1036 (1529)
T KOG0413|consen 1035 QF 1036 (1529)
T ss_pred hh
Confidence 43
No 95
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=35.70 E-value=1.2e+02 Score=30.49 Aligned_cols=66 Identities=21% Similarity=0.178 Sum_probs=38.3
Q ss_pred hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhh-chhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhh
Q 026338 43 LAAELFPYLVELQSSPESLVRKSLIETIEDIGL-KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTN 109 (240)
Q Consensus 43 ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~-~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~ 109 (240)
+++..++.+.+- ..++...--++++-+++... +....++.++|.+..-|.|..|.|.|.++.|+..
T Consensus 255 llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~ 321 (569)
T KOG1242|consen 255 LLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLK 321 (569)
T ss_pred hhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHH
Confidence 334444443332 33444444455555554333 2344577777777777788888888888877754
No 96
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=35.10 E-value=3.3e+02 Score=25.84 Aligned_cols=80 Identities=20% Similarity=0.159 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHH--HHHHHHHHHhhc-hhh----hHHHHHHHHHHHhcCCChHH
Q 026338 27 SSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRK--SLIETIEDIGLK-AME----HSSILMPVLLAFLRDGDSGV 99 (240)
Q Consensus 27 ~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk--~~~~fiee~~~~-~~e----~~~~~v~~L~~LL~d~d~~V 99 (240)
.+|.+.-....++||++...++.+++-. .|-..-.| ...+.+++++.. .++ ....+...+...+..+...|
T Consensus 236 ~~L~~~~~~f~~kdp~l~~~~i~~llk~--WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qV 313 (409)
T PF01603_consen 236 QQLSYCVVQFLEKDPSLAEPVIKGLLKH--WPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQV 313 (409)
T ss_dssp HHHHHHHHHHHHH-GGGHHHHHHHHHHH--S-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHh--CCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 6777777888889999999999999764 44333333 344666666543 222 23333344444456777778
Q ss_pred HHHHHHhhh
Q 026338 100 AGKSIVCGT 108 (240)
Q Consensus 100 ~K~aI~~~t 108 (240)
+.+|+....
T Consensus 314 AErAl~~w~ 322 (409)
T PF01603_consen 314 AERALYFWN 322 (409)
T ss_dssp HHHHHGGGG
T ss_pred HHHHHHHHC
Confidence 777776543
No 97
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.09 E-value=5.9e+02 Score=27.23 Aligned_cols=101 Identities=16% Similarity=0.152 Sum_probs=65.3
Q ss_pred CccchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCC-----chHHhhhHHHHhhcCC-chhhHHHHHHH---HHH
Q 026338 1 MAAVSRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADP-----SLAAELFPYLVELQSS-PESLVRKSLIE---TIE 71 (240)
Q Consensus 1 m~~~~~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p-----~ll~~~l~~vl~~~~d-~~~~vRk~~~~---fie 71 (240)
|..+++.++-.||..-..++|-.+|++.|.+.=|++.-.+- -..+.++|.++.+-.+ .+.++--..+. ++-
T Consensus 161 ~~~sasSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~ 240 (1051)
T KOG0168|consen 161 IGSSASSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLC 240 (1051)
T ss_pred ccccchHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 34566779999999999998999999999999988875432 2457888888877433 33333322222 222
Q ss_pred HHhh----------------------chhhhHHHHHHHHHHHhcCCChHHHH
Q 026338 72 DIGL----------------------KAMEHSSILMPVLLAFLRDGDSGVAG 101 (240)
Q Consensus 72 e~~~----------------------~~~e~~~~~v~~L~~LL~d~d~~V~K 101 (240)
|+|. .+.++..+++.+|.++-++...+++|
T Consensus 241 evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~ 292 (1051)
T KOG0168|consen 241 EVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQ 292 (1051)
T ss_pred hhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHh
Confidence 3331 13456677777777777766655443
No 98
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=34.82 E-value=72 Score=22.07 Aligned_cols=34 Identities=18% Similarity=0.390 Sum_probs=21.2
Q ss_pred HHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHH
Q 026338 28 SLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSL 66 (240)
Q Consensus 28 ~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk~~ 66 (240)
++.+.|+++ ..+|++++.++..+ ...++++.+.+
T Consensus 9 qf~~lR~~v-q~NP~lL~~lLqql----~~~nP~l~q~I 42 (59)
T PF09280_consen 9 QFQQLRQLV-QQNPQLLPPLLQQL----GQSNPQLLQLI 42 (59)
T ss_dssp HHHHHHHHH-HC-GGGHHHHHHHH----HCCSHHHHHHH
T ss_pred HHHHHHHHH-HHCHHHHHHHHHHH----hccCHHHHHHH
Confidence 567788888 59998777777765 23445544443
No 99
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=34.69 E-value=3e+02 Score=23.79 Aligned_cols=141 Identities=15% Similarity=0.093 Sum_probs=89.3
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHH
Q 026338 11 SLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLA 90 (240)
Q Consensus 11 ~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~ 90 (240)
.|+..+....+..-+...|+-+-++.-+++ ...+-++.-+..+...+..+++-+....+..+.++.+-+.+.+-+.|..
T Consensus 4 ~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~ 82 (234)
T PF12530_consen 4 LLLYKLGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLL 82 (234)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 345555556777789999999999998887 6667777777677666666666666666766666655444332222222
Q ss_pred H-hc-----CCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHH
Q 026338 91 F-LR-----DGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALK 164 (240)
Q Consensus 91 L-L~-----d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiK 164 (240)
+ ++ -++..-...-|.+++++.+.+- . ..+.|.-|...=+.+++ ++.++.++-.|+.
T Consensus 83 ~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~-----~----------~p~~g~~ll~~ls~~L~---~~~~~~~~alale 144 (234)
T PF12530_consen 83 LILRIPSSFSSKDEFWECLISIAASIRDICC-----S----------RPDHGVDLLPLLSGCLN---QSCDEVAQALALE 144 (234)
T ss_pred HHhhcccccCCCcchHHHHHHHHHHHHHHHH-----h----------ChhhHHHHHHHHHHHHh---ccccHHHHHHHHH
Confidence 1 11 0122233344444455544333 2 23388888888788876 6788889999998
Q ss_pred HHhHHh
Q 026338 165 FLETHV 170 (240)
Q Consensus 165 F~e~vI 170 (240)
++..+-
T Consensus 145 ~l~~Lc 150 (234)
T PF12530_consen 145 ALAPLC 150 (234)
T ss_pred HHHHHH
Confidence 887664
No 100
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.41 E-value=85 Score=32.34 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=41.4
Q ss_pred CCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCC
Q 026338 40 DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDG 95 (240)
Q Consensus 40 ~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~ 95 (240)
+++-++++++++.+.+.+-+.+.-|-.+.-|..+..+..+- ..|++.|..+++-.
T Consensus 344 ~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-~~cv~~lLell~~~ 398 (734)
T KOG1061|consen 344 NDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-NDCVSILLELLETK 398 (734)
T ss_pred hHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-hhhHHHHHHHHhhc
Confidence 34455778888888887877777777777777776676666 89999999999844
No 101
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=34.17 E-value=1.9e+02 Score=30.09 Aligned_cols=87 Identities=16% Similarity=0.266 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHh-cCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc--hhhhHHHHHHHHHHHhcCCChHHH
Q 026338 24 VKLSSLKQVRGILS-SADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLK--AMEHSSILMPVLLAFLRDGDSGVA 100 (240)
Q Consensus 24 ~kl~~L~q~relll-~~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~--~~e~~~~~v~~L~~LL~d~d~~V~ 100 (240)
-+...|..+-+++- ...+..-..|+|-+..+..|+.++||-=++.++..+.+. .+..=..+.+.+..|..|++..|-
T Consensus 573 ~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr 652 (759)
T KOG0211|consen 573 VRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVR 652 (759)
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchh
Confidence 34555555555543 245566688999999999999999999999999987653 122223334455566679988887
Q ss_pred HHHHHhhhhh
Q 026338 101 GKSIVCGTNF 110 (240)
Q Consensus 101 K~aI~~~t~l 110 (240)
=+|+++.+.+
T Consensus 653 ~~a~~a~~~i 662 (759)
T KOG0211|consen 653 YRAILAFGSI 662 (759)
T ss_pred HHHHHHHHHH
Confidence 7777777654
No 102
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.07 E-value=1.1e+02 Score=27.17 Aligned_cols=69 Identities=17% Similarity=0.133 Sum_probs=48.8
Q ss_pred chHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhh
Q 026338 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (240)
Q Consensus 42 ~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~l 110 (240)
.+|+-|++++-++-++-.---|.=+.++|.--+.+-.-.+++++..|..-|...|-.|.+++.+....+
T Consensus 114 ~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~l 182 (262)
T KOG3961|consen 114 PYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQL 182 (262)
T ss_pred HHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 377889998888766555545555667776555555567888888888888888888887776655443
No 103
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=33.92 E-value=3.4e+02 Score=31.68 Aligned_cols=108 Identities=10% Similarity=0.104 Sum_probs=74.2
Q ss_pred chHHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHhcCCC--chH---HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhch
Q 026338 4 VSRDQALSLLAAANNH-GDLAVKLSSLKQVRGILSSADP--SLA---AELFPYLVELQSSPESLVRKSLIETIEDIGLKA 77 (240)
Q Consensus 4 ~~~~~v~~lln~A~~~-~d~~~kl~~L~q~relll~~~p--~ll---~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~ 77 (240)
.+...|..|+.+-... ....+|-..+++.|++.-+++- .++ ++++|.++.+-...+..+|...+..+...+..
T Consensus 10 ~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~- 88 (2102)
T PLN03200 10 GTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKE- 88 (2102)
T ss_pred chHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-
Confidence 5677888888887754 3445788889999999975522 344 45889888876667788999888777766543
Q ss_pred hhh-----HHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHH
Q 026338 78 MEH-----SSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVL 115 (240)
Q Consensus 78 ~e~-----~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l 115 (240)
.++ ...+++.|..+|+..++...+.| ++.||-+..
T Consensus 89 e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~A---A~AL~sLS~ 128 (2102)
T PLN03200 89 EDLRVKVLLGGCIPPLLSLLKSGSAEAQKAA---AEAIYAVSS 128 (2102)
T ss_pred HHHHHHHHHcCChHHHHHHHHCCCHHHHHHH---HHHHHHHHc
Confidence 222 35677788888888777655544 344444444
No 104
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=33.81 E-value=2e+02 Score=21.43 Aligned_cols=66 Identities=11% Similarity=0.109 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhch
Q 026338 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA 77 (240)
Q Consensus 6 ~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~ 77 (240)
+.++-.+++++-.+.|..+=.+.+. +|- -|.+.++++-.++....+....-|+.++.++...|...
T Consensus 2 ~k~i~~~l~ey~~~~D~~ea~~~l~---~L~---~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 2 KKKIFLIIEEYLSSGDTDEAVHCLL---ELK---LPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHH---HhC---CCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 4567788999998888755555554 332 24566788888887777777778999999999888653
No 105
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.78 E-value=89 Score=32.92 Aligned_cols=126 Identities=14% Similarity=0.187 Sum_probs=72.2
Q ss_pred hhhHHHHhhcCCchhhHHHHHHHHHHHHhh--ch--hhhHHHHHHHHHHHhcCCChHHHHHHHH---hhhhhhHH-HHHH
Q 026338 46 ELFPYLVELQSSPESLVRKSLIETIEDIGL--KA--MEHSSILMPVLLAFLRDGDSGVAGKSIV---CGTNFFCR-VLEE 117 (240)
Q Consensus 46 ~~l~~vl~~~~d~~~~vRk~~~~fiee~~~--~~--~e~~~~~v~~L~~LL~d~d~~V~K~aI~---~~t~lY~~-~l~~ 117 (240)
+-+.+.+...+|+.+.+|-.+...+..... ++ -..-.+++.....+|+|+|+.|+=.||+ |..-.||. +|+.
T Consensus 727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~d 806 (982)
T KOG4653|consen 727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPD 806 (982)
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHH
Confidence 446667766678877777776666655554 22 2356778888889999999999999999 55666764 3433
Q ss_pred HhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhhccCCCCCcc
Q 026338 118 ITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFTSDSNDFE 181 (240)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qT~~~~d~~ 181 (240)
+.-++....+-.+ =+.....=+.|++.+..-|. .+.||.+.+|-++=.|..+|+
T Consensus 807 L~e~Y~s~k~k~~-----~d~~lkVGEai~k~~qa~Ge-----l~~~y~~~Li~tfl~gvrepd 860 (982)
T KOG4653|consen 807 LSEEYLSEKKKLQ-----TDYRLKVGEAILKVAQALGE-----LVFKYKAVLINTFLSGVREPD 860 (982)
T ss_pred HHHHHHhcccCCC-----ccceehHHHHHHHHHHHhcc-----HHHHHHHHHHHHHHHhcCCch
Confidence 4333332221000 01111222444443322222 345566666666666655553
No 106
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.46 E-value=5e+02 Score=29.21 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=74.6
Q ss_pred hhcCCchhhHHHHHHHHHHHHhhch------hhhHHHHHHHHHHHhc-------CC---------ChHHHHHHHHhhhhh
Q 026338 53 ELQSSPESLVRKSLIETIEDIGLKA------MEHSSILMPVLLAFLR-------DG---------DSGVAGKSIVCGTNF 110 (240)
Q Consensus 53 ~~~~d~~~~vRk~~~~fiee~~~~~------~e~~~~~v~~L~~LL~-------d~---------d~~V~K~aI~~~t~l 110 (240)
+...|...+||+-.++-+=.+.-.+ .-+-..++..+.-||. ++ -....-..|++.+-+
T Consensus 1004 ~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIakl 1083 (1610)
T KOG1848|consen 1004 DLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKL 1083 (1610)
T ss_pred HHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHH
Confidence 5567888999999988776665332 2244445555556665 11 112233468888999
Q ss_pred hHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhhcc
Q 026338 111 FCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFT 174 (240)
Q Consensus 111 Y~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qT 174 (240)
|+.-| +-.-+. +.--+.|+.+-++-.+-. .+++.-+++++||-+|+++.-..
T Consensus 1084 f~e~f-----k~llnl---n~f~~vwe~ll~flkrl~----s~~s~e~slsai~~~qell~sii 1135 (1610)
T KOG1848|consen 1084 FSENF-----KLLLNL---NGFLDVWEELLQFLKRLH----SDISPEISLSAIKALQELLFSII 1135 (1610)
T ss_pred HHHHH-----HHHHhc---ccHHHHHHHHHHHHHHHH----hcCChHhHHHHHHHHHHHHHHHh
Confidence 99988 433333 556788988877655543 35888999999999999987655
No 107
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=33.44 E-value=1.6e+02 Score=29.62 Aligned_cols=90 Identities=23% Similarity=0.313 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHhcCCCc----hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc------------------hh---
Q 026338 24 VKLSSLKQVRGILSSADPS----LAAELFPYLVELQSSPESLVRKSLIETIEDIGLK------------------AM--- 78 (240)
Q Consensus 24 ~kl~~L~q~relll~~~p~----ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~------------------~~--- 78 (240)
+|...+.-+.-+. .-.|. .+++++|.+.+.-.|..++||+...+-+-..|.. +|
T Consensus 270 tK~aslellg~m~-~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~ 348 (569)
T KOG1242|consen 270 TKMASLELLGAMA-DCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCY 348 (569)
T ss_pred hHHHHHHHHHHHH-HhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccc
Confidence 4555555555333 23443 4578888887888899999999999888776631 11
Q ss_pred -------------------hhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHH
Q 026338 79 -------------------EHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRV 114 (240)
Q Consensus 79 -------------------e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~ 114 (240)
.=+..+++.|+.=+++.+...-|.+++...++|.++
T Consensus 349 ~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lv 403 (569)
T KOG1242|consen 349 TPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLV 403 (569)
T ss_pred hHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhh
Confidence 123344455555555566666677777777777666
No 108
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=33.18 E-value=4.8e+02 Score=28.30 Aligned_cols=111 Identities=18% Similarity=0.127 Sum_probs=75.7
Q ss_pred chHHHHHHHHHHhhcC--CChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcC----CchhhHHHHHHHHHHHHhhc-
Q 026338 4 VSRDQALSLLAAANNH--GDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQS----SPESLVRKSLIETIEDIGLK- 76 (240)
Q Consensus 4 ~~~~~v~~lln~A~~~--~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~----d~~~~vRk~~~~fiee~~~~- 76 (240)
+.-.++..-|.+|... .+.+.|++.|.-.-+.+. +..+++++|=+.++-+.. .+...|||--+-.|......
T Consensus 127 tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls-r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~ 205 (1233)
T KOG1824|consen 127 TVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS-RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC 205 (1233)
T ss_pred HHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH-hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc
Confidence 3445666677777754 555689999999988885 888888898888886542 34567888877766665433
Q ss_pred hhhhHHHHHHHHHHHhc-CCChHHHHHHHHhhhhhhHHHH
Q 026338 77 AMEHSSILMPVLLAFLR-DGDSGVAGKSIVCGTNFFCRVL 115 (240)
Q Consensus 77 ~~e~~~~~v~~L~~LL~-d~d~~V~K~aI~~~t~lY~~~l 115 (240)
..+....+++.|..=|. -..+..++.-|||.+.+-|.+=
T Consensus 206 ~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag 245 (1233)
T KOG1824|consen 206 NRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAG 245 (1233)
T ss_pred CHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhc
Confidence 23344445544444343 3457888999999998877653
No 109
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=32.45 E-value=5.6e+02 Score=26.16 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCCchH-HhhhHHHHhhcCCchhhHHHHHHHHHHHHhh
Q 026338 29 LKQVRGILSSADPSLA-AELFPYLVELQSSPESLVRKSLIETIEDIGL 75 (240)
Q Consensus 29 L~q~relll~~~p~ll-~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~ 75 (240)
...+-+.+..+.+-.+ ++++|+++-|-.++++++|+|..+.+.....
T Consensus 102 F~~~f~~~~~~~~~~~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~ 149 (727)
T PF12726_consen 102 FDAIFSSLQSKKPLKLPKELLPGMTYFLFDGNPERRRWAERWWQRLKR 149 (727)
T ss_pred HHHHHHHHhccCCccccccccchhhhhhhcCCHHHHHHHHHHHHHcCC
Confidence 3445555555555444 8999999998889999999999999988644
No 110
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.85 E-value=4.1e+02 Score=26.41 Aligned_cols=101 Identities=20% Similarity=0.306 Sum_probs=71.9
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcC-CCc----hHHhhhHHHHhhc-CCchhhHHHHHHHHHHHHhhchhhh---
Q 026338 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSA-DPS----LAAELFPYLVELQ-SSPESLVRKSLIETIEDIGLKAMEH--- 80 (240)
Q Consensus 10 ~~lln~A~~~~d~~~kl~~L~q~relll~~-~p~----ll~~~l~~vl~~~-~d~~~~vRk~~~~fiee~~~~~~e~--- 80 (240)
.+.+-++..+.|...++....+.|.++... +|- .-.+.+|.++++- .+.++.++-..|--+.-++....+.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 344455556677778999999999999632 342 2257788888774 4666778777777777777644432
Q ss_pred --HHHHHHHHHHHhcCCChHHHHHHHHhhhhh
Q 026338 81 --SSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (240)
Q Consensus 81 --~~~~v~~L~~LL~d~d~~V~K~aI~~~t~l 110 (240)
-..+++.+..|+...+..|..+|+.+.+++
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNI 179 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNI 179 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhcc
Confidence 234566788889999999999999988876
No 111
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=31.71 E-value=3.1e+02 Score=28.19 Aligned_cols=86 Identities=22% Similarity=0.129 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhcCCCc---hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHh----hchhhhHHHHHHHHHHHhcCCC
Q 026338 24 VKLSSLKQVRGILSSADPS---LAAELFPYLVELQSSPESLVRKSLIETIEDIG----LKAMEHSSILMPVLLAFLRDGD 96 (240)
Q Consensus 24 ~kl~~L~q~relll~~~p~---ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~----~~~~e~~~~~v~~L~~LL~d~d 96 (240)
-=+.-|+.--+..+.++|. +.+.++-.+|-....++..||+-+.++|.-+. -.+..+...++.-|..-+-|..
T Consensus 66 Ril~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE 145 (885)
T COG5218 66 RILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDRE 145 (885)
T ss_pred HHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcch
Confidence 3456677777777778885 78888888887777788899999988887653 2345556666666666666777
Q ss_pred hHHHHHHHHhhhh
Q 026338 97 SGVAGKSIVCGTN 109 (240)
Q Consensus 97 ~~V~K~aI~~~t~ 109 (240)
++|-..|+.|.+-
T Consensus 146 ~~VR~eAv~~L~~ 158 (885)
T COG5218 146 KAVRREAVKVLCY 158 (885)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776653
No 112
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=31.08 E-value=2.7e+02 Score=30.78 Aligned_cols=82 Identities=22% Similarity=0.352 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhcC-CCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhh---c----hhh-hHHHHHHHHHHHhcC
Q 026338 24 VKLSSLKQVRGILSSA-DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL---K----AME-HSSILMPVLLAFLRD 94 (240)
Q Consensus 24 ~kl~~L~q~relll~~-~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~---~----~~e-~~~~~v~~L~~LL~d 94 (240)
.|++.|.=++++...- +-..+|-++|+++-+-.|+...||-....-+.++.. . +.. +-..+.|.|..|+.|
T Consensus 439 tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d 518 (1431)
T KOG1240|consen 439 TKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLND 518 (1431)
T ss_pred hHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhcc
Confidence 6888888888888654 446889999999999999999999888777766542 1 111 344556789999999
Q ss_pred CChHHHHHHHH
Q 026338 95 GDSGVAGKSIV 105 (240)
Q Consensus 95 ~d~~V~K~aI~ 105 (240)
.++..++-+..
T Consensus 519 ~~~~~vRiayA 529 (1431)
T KOG1240|consen 519 SSAQIVRIAYA 529 (1431)
T ss_pred CccceehhhHH
Confidence 77766665554
No 113
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=30.84 E-value=5.2e+02 Score=25.92 Aligned_cols=167 Identities=14% Similarity=0.081 Sum_probs=89.8
Q ss_pred HHHHhhcC-CchhhHHHHHHHHHHHHhhchhhhHHHHH-----HHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhh
Q 026338 49 PYLVELQS-SPESLVRKSLIETIEDIGLKAMEHSSILM-----PVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQF 122 (240)
Q Consensus 49 ~~vl~~~~-d~~~~vRk~~~~fiee~~~~~~e~~~~~v-----~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~ 122 (240)
-.|+.++. ...+++.|.++++||-.++--.+-+..++ +.+.+-.+-.||.+++.+.++.+++-=..=..+- +-
T Consensus 224 ~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~q-rr 302 (832)
T KOG3678|consen 224 GVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQ-RR 302 (832)
T ss_pred hhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHH-HH
Confidence 33444443 34579999999999888765555444333 3444445567899999999988876422221111 11
Q ss_pred hccCCccchHHHHHHHHHHH-HHHHHHH-----------hccCCCCchHHHHHHHHhHHhhhccCCCCCcccccccCCCc
Q 026338 123 RWHGKVERWLEELWTWMVRF-KDAVFAI-----------ALEPGLVGTKLLALKFLETHVLLFTSDSNDFENFTKEGSKQ 190 (240)
Q Consensus 123 ~~~~~~~~~~~~~W~~m~~~-K~~Il~~-----------~~d~~n~Gvr~~aiKF~e~vIl~qT~~~~d~~~~~~~~~~~ 190 (240)
++.. -..-|=...++ |+.++.. --+-+++=-|--++|.+|-+|.+.-|+.=.-+..+...
T Consensus 303 mveK-----r~~EWLF~LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQ--- 374 (832)
T KOG3678|consen 303 MVEK-----RAAEWLFPLAFSKDELLRLHACLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQ--- 374 (832)
T ss_pred HHHh-----hhhhhhhhhhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhc---
Confidence 1111 12233333222 3444432 00122333344567788887777665531101111110
Q ss_pred cccccccCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 026338 191 TFNISWLSGGHPFLDPVSLTSEANRMLGTLMDLL 224 (240)
Q Consensus 191 d~sl~~vP~~Hp~l~~~~Le~Ea~~lL~~LL~~l 224 (240)
.-.-+|+-.--|+|+-..||+.+-+.|-..++.-
T Consensus 375 G~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAa 408 (832)
T KOG3678|consen 375 GRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAA 408 (832)
T ss_pred cCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHH
Confidence 1122455666789999999999888876665543
No 114
>PF06075 DUF936: Plant protein of unknown function (DUF936); InterPro: IPR010341 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=30.68 E-value=1.5e+02 Score=29.78 Aligned_cols=72 Identities=11% Similarity=-0.003 Sum_probs=39.2
Q ss_pred hhHHHHhhcCCchhhHHHHHHHHHHHHhh---c------------hhhhHHHHHHHHHHHhcCCCh-HHHHHHHHhh-hh
Q 026338 47 LFPYLVELQSSPESLVRKSLIETIEDIGL---K------------AMEHSSILMPVLLAFLRDGDS-GVAGKSIVCG-TN 109 (240)
Q Consensus 47 ~l~~vl~~~~d~~~~vRk~~~~fiee~~~---~------------~~e~~~~~v~~L~~LL~d~d~-~V~K~aI~~~-t~ 109 (240)
=+.+..+++..=..|-|.|+.+|+|++.- + -...+.++.+.|-.+-.+.+. .+....|--. -.
T Consensus 483 gl~et~eLA~~L~~Esr~WFL~FVE~aLD~gf~~~~~~~~~~IA~~LsQLKrVNdWLD~v~~~~~~~~~~~E~ierLrkK 562 (579)
T PF06075_consen 483 GLKETAELAKQLQEESRSWFLKFVEKALDAGFKKSRGEDDGQIAGMLSQLKRVNDWLDEVGSGSNESEELVETIERLRKK 562 (579)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccCCCcchHHHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHH
Confidence 45555565544456899999999999741 1 123455566666555443333 2222333333 34
Q ss_pred hhHHHHHHH
Q 026338 110 FFCRVLEEI 118 (240)
Q Consensus 110 lY~~~l~~~ 118 (240)
||..+|.+|
T Consensus 563 IY~fLL~HV 571 (579)
T PF06075_consen 563 IYGFLLTHV 571 (579)
T ss_pred HHHHHHHHH
Confidence 666666433
No 115
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=30.54 E-value=1.4e+02 Score=29.83 Aligned_cols=71 Identities=21% Similarity=0.302 Sum_probs=48.8
Q ss_pred CCchHHhhhHHHHhh-cCCchhhHHHHHHHHHHHHhhc------hhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhh
Q 026338 40 DPSLAAELFPYLVEL-QSSPESLVRKSLIETIEDIGLK------AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (240)
Q Consensus 40 ~p~ll~~~l~~vl~~-~~d~~~~vRk~~~~fiee~~~~------~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~l 110 (240)
+|+.+.+.+-.+-.+ ...+..-+|=-+++|+.-.++. ....++.+..-...||+|++..|.-.|+.+++..
T Consensus 473 ~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~F 550 (559)
T PF14868_consen 473 DPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQF 550 (559)
T ss_pred ChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 455555554444333 2445445888899999877652 2346777777777788999999999999988753
No 116
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=30.12 E-value=3.1e+02 Score=28.56 Aligned_cols=65 Identities=22% Similarity=0.260 Sum_probs=43.0
Q ss_pred hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc-hhhhHHHHHH-HHHHHhcCCChHHHHHHHHhh
Q 026338 43 LAAELFPYLVELQSSPESLVRKSLIETIEDIGLK-AMEHSSILMP-VLLAFLRDGDSGVAGKSIVCG 107 (240)
Q Consensus 43 ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~-~~e~~~~~v~-~L~~LL~d~d~~V~K~aI~~~ 107 (240)
+.+..+|.+.+++.|..-.+|.-+.+++...+.. ..++...-.. .+..-+.|....+.++|..++
T Consensus 476 ~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l 542 (759)
T KOG0211|consen 476 VSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNL 542 (759)
T ss_pred hhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 5588899999999999889999999999887654 2344332222 333335565556666555444
No 117
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=29.70 E-value=4.9e+02 Score=28.88 Aligned_cols=128 Identities=19% Similarity=0.330 Sum_probs=81.0
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcC---CCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhh--chh
Q 026338 4 VSRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSA---DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL--KAM 78 (240)
Q Consensus 4 ~~~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~---~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~--~~~ 78 (240)
|..+-++=||.+|..-+.-..=+..|..+.-|+... -|.+ -+++..++.|--.|+.=+|+++.+||.++.. .+.
T Consensus 652 s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v-~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~a 730 (1431)
T KOG1240|consen 652 SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV-KDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAA 730 (1431)
T ss_pred eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH-HHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhh
Confidence 467778999999998766556677777777766433 3434 4778888888778999999999999998743 344
Q ss_pred hhHHHHHHHHHHHhcCCChHHHHH--HHHhh-hhhhHHHHHHHhhhhhccCCccchHHHHHHHH
Q 026338 79 EHSSILMPVLLAFLRDGDSGVAGK--SIVCG-TNFFCRVLEEITMQFRWHGKVERWLEELWTWM 139 (240)
Q Consensus 79 e~~~~~v~~L~~LL~d~d~~V~K~--aI~~~-t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m 139 (240)
+--.+++|.++-++.-.-..+-|. -++|. --+=|.+|.+++ +|- .++..-|...
T Consensus 731 dvyc~l~P~irpfl~~~v~~i~s~~~LlsclkpPVsRsv~~~l~-r~~------~ens~f~k~l 787 (1431)
T KOG1240|consen 731 DVYCKLMPLIRPFLERPVIQIESKEVLLSCLKPPVSRSVFNQLL-RWS------DENSSFWKKL 787 (1431)
T ss_pred hheEEeehhhHHhhhccHhhhcchHHHHHHhcCCCcHHHHHHHH-HHh------hcchHHHHHH
Confidence 444555667776666332233333 23343 334455555554 332 2345556544
No 118
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=29.59 E-value=4.8e+02 Score=24.46 Aligned_cols=99 Identities=12% Similarity=0.126 Sum_probs=62.2
Q ss_pred chhhHHHHHHHHHHHHhhc-hhhh-HHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHH
Q 026338 58 PESLVRKSLIETIEDIGLK-AMEH-SSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEEL 135 (240)
Q Consensus 58 ~~~~vRk~~~~fiee~~~~-~~e~-~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~ 135 (240)
++.++..-+.+++...|.- ..|. +.+++. ....++++-+.-.-.+.+|..+.+.+. .. ++.....
T Consensus 168 p~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~------~k~k~sliaKLA~q~a~~Y~~A~~~l~-----~~--~~~i~~~ 234 (353)
T cd09243 168 KGSDLDPRVLEAYINQCTAEAQEVTVARAIE------LKHNAGLISALAYETAKLFQKADDSLS-----SL--DPEYSGK 234 (353)
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHHHHHHH------cccchHHHHHHHHHHHHHHHHHHHHHH-----cC--CccccHH
Confidence 5567778888888777753 3332 333322 123455554444555668999985442 11 1335667
Q ss_pred HHHHHHHHHHHHHH---------hccCCCCchHHHHHHHHhHH
Q 026338 136 WTWMVRFKDAVFAI---------ALEPGLVGTKLLALKFLETH 169 (240)
Q Consensus 136 W~~m~~~K~~Il~~---------~~d~~n~Gvr~~aiKF~e~v 169 (240)
|..+..+|...+.- ..+.+..|.-+++.|-.+..
T Consensus 235 W~~~v~~K~~~f~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~ 277 (353)
T cd09243 235 WRKYLQLKSVFYLAYAYCYHGETLLAKDKCGEAIRSLQESEKL 277 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcchHHHHHHHHHHHHHH
Confidence 99999999887642 22466779999998877763
No 119
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=29.19 E-value=1e+02 Score=26.36 Aligned_cols=53 Identities=17% Similarity=0.175 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhh
Q 026338 26 LSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH 80 (240)
Q Consensus 26 l~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~ 80 (240)
++++.+.|+++++.+... ..+.+++.|...++..=|+=+++.|--.|+-...|
T Consensus 85 lS~~~~gR~~~l~~~~~~--~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H 137 (192)
T PF04063_consen 85 LSQLPEGRQFFLDPQRYD--GPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH 137 (192)
T ss_pred hcCCHHHHHHHhCchhhh--hHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH
Confidence 567788899998655433 25666666765666666666788998888866554
No 120
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=29.19 E-value=1.4e+02 Score=24.69 Aligned_cols=56 Identities=23% Similarity=0.217 Sum_probs=26.8
Q ss_pred hhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHH
Q 026338 46 ELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKS 103 (240)
Q Consensus 46 ~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~a 103 (240)
.+.+.+.+...+.+.-+||+..-.+-....+ +....+...+..++.|++.-|.|-+
T Consensus 120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--~~~~~~l~~~~~~~~d~~~~vq~ai 175 (213)
T PF08713_consen 120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRK--EDFDELLEIIEALLKDEEYYVQKAI 175 (213)
T ss_dssp GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--CHHHHHHHHHHHCTTGS-HHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHcCCchHHHHHHH
Confidence 3444444444555666666665443222222 4444555555555555555554443
No 121
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.94 E-value=5.8e+02 Score=28.01 Aligned_cols=95 Identities=27% Similarity=0.269 Sum_probs=59.9
Q ss_pred HHHHHHHHhhcCCChHHHHHH-HHHHHHHHhcCCCchHHhhhHHHH----hhcCCchhhHHHHHHHHHHHHhhchhh---
Q 026338 8 QALSLLAAANNHGDLAVKLSS-LKQVRGILSSADPSLAAELFPYLV----ELQSSPESLVRKSLIETIEDIGLKAME--- 79 (240)
Q Consensus 8 ~v~~lln~A~~~~d~~~kl~~-L~q~relll~~~p~ll~~~l~~vl----~~~~d~~~~vRk~~~~fiee~~~~~~e--- 79 (240)
..+..|.+. ..+|..-.... |-++..++.+-.-.+=+++++.++ .+-...+.++++-.++||--.+.+.|+
T Consensus 785 efl~~Isag-l~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l 863 (1176)
T KOG1248|consen 785 EFLSIISAG-LVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECL 863 (1176)
T ss_pred HHHHHHHhh-hcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 344555444 44554333333 666666665432222244444444 445678899999999999877776654
Q ss_pred --hHHHHHHHHHHHhcCCChHHHHHH
Q 026338 80 --HSSILMPVLLAFLRDGDSGVAGKS 103 (240)
Q Consensus 80 --~~~~~v~~L~~LL~d~d~~V~K~a 103 (240)
|.+.+++.+..++.|....+.+.+
T Consensus 864 ~~~~~~LL~sll~ls~d~k~~~r~Kv 889 (1176)
T KOG1248|consen 864 SPHLEELLPSLLALSHDHKIKVRKKV 889 (1176)
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 677788888888888776665554
No 122
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.59 E-value=2.3e+02 Score=29.30 Aligned_cols=105 Identities=22% Similarity=0.207 Sum_probs=58.1
Q ss_pred HHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhh---hhhhHHHHHHHhhhhhccCC
Q 026338 51 LVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCG---TNFFCRVLEEITMQFRWHGK 127 (240)
Q Consensus 51 vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~---t~lY~~~l~~~~~~~~~~~~ 127 (240)
++.+.+|.+..||+..++=+-...- --++-..+......++.|++..|-|.|||.. ++.||.=
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~e-g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~------------- 268 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSE-GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAP------------- 268 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcc-cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCc-------------
Confidence 3344556666666666654332211 1222333444455667888888888887754 4444411
Q ss_pred ccchHHHHHHHHHHHHHHHHHH---hccCCCCchHHHHHHHH------hHHhhhcc
Q 026338 128 VERWLEELWTWMVRFKDAVFAI---ALEPGLVGTKLLALKFL------ETHVLLFT 174 (240)
Q Consensus 128 ~~~~~~~~W~~m~~~K~~Il~~---~~d~~n~Gvr~~aiKF~------e~vIl~qT 174 (240)
.+++.++ ..++++.++- +....+.+||+.|.|.+ ..=+|-||
T Consensus 269 ~e~e~~e-----~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QT 319 (823)
T KOG2259|consen 269 LERESEE-----EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQT 319 (823)
T ss_pred ccchhhh-----hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHH
Confidence 1111111 2344444432 44578899999999975 44577787
No 123
>PF04793 Herpes_BBRF1: BRRF1-like protein; InterPro: IPR006878 Most proteins in this entry are uncharacterised viral proteins translated from gene 49. The UL6 locus of pseudorabies virus (PRV) has a gene cluster with homology to herpes simplex virus UL5, UL6, UL7 and UL8, Epstein-Barr virus BBRF1 and BBRF2, and Kaposi sarcoma-associated herpes virus ORF43 and ORF42 [].
Probab=27.52 E-value=2.1e+02 Score=26.09 Aligned_cols=95 Identities=13% Similarity=0.093 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHhhcC---CC------hHHHHHHHHHHHHHHh-cC--CCchHHhhhHHHH----hhcCCchhhHHHHHHH
Q 026338 5 SRDQALSLLAAANNH---GD------LAVKLSSLKQVRGILS-SA--DPSLAAELFPYLV----ELQSSPESLVRKSLIE 68 (240)
Q Consensus 5 ~~~~v~~lln~A~~~---~d------~~~kl~~L~q~relll-~~--~p~ll~~~l~~vl----~~~~d~~~~vRk~~~~ 68 (240)
.-++|+..++..... ++ .-+|..-|-++-..+. |+ +|..+|.+...++ .+..-...+.++++-+
T Consensus 5 d~~~vv~el~~i~~~~~~~~~~~p~~~leR~~fL~kv~q~L~qhr~~E~~Ivp~i~~ni~y~L~~L~~~~~~~~~~~i~~ 84 (284)
T PF04793_consen 5 DIGQVVHELNTISVSTRVPRSSHPLLALERGLFLLKVCQVLMQHRQSEPFIVPKIRSNIIYFLEELKELSPGDCQEAIKE 84 (284)
T ss_pred CHHHHHHHHhccccCCCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 346888888888763 22 1245555555555444 33 6767777666655 1122234567888888
Q ss_pred HHHHH-hhchhhhHHHHHHHHHHHhcCCChHH
Q 026338 69 TIEDI-GLKAMEHSSILMPVLLAFLRDGDSGV 99 (240)
Q Consensus 69 fiee~-~~~~~e~~~~~v~~L~~LL~d~d~~V 99 (240)
.+.++ -..+..+...+...+..++..+-|..
T Consensus 85 ~L~~l~~~~d~~L~~~L~~~l~~ll~~~yP~~ 116 (284)
T PF04793_consen 85 ILDHLEEAGDSNLERELAKGLPKLLGCKYPHI 116 (284)
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHhhhCCCc
Confidence 88875 45566666666666666666554433
No 124
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=27.41 E-value=2.2e+02 Score=23.27 Aligned_cols=64 Identities=17% Similarity=0.111 Sum_probs=39.3
Q ss_pred HHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHH
Q 026338 49 PYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (240)
Q Consensus 49 ~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~ 113 (240)
+.+.+...+.+.-+||++..++.....+ ......+++.+..++.|++.-|.|-+--+...++..
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK 171 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 4444556677777888887777554443 345666666666667777666666655555554443
No 125
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.87 E-value=8.6e+02 Score=26.54 Aligned_cols=100 Identities=19% Similarity=0.216 Sum_probs=59.0
Q ss_pred HHHHHHHHhhcCCChHHH---HHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHH----HHHHHHHHh------
Q 026338 8 QALSLLAAANNHGDLAVK---LSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKS----LIETIEDIG------ 74 (240)
Q Consensus 8 ~v~~lln~A~~~~d~~~k---l~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk~----~~~fiee~~------ 74 (240)
+++..|-++..+.|...+ +-.|..+-+.+-+.+..+++.|++-+.+.-.|++..||-. +..|++..-
T Consensus 118 ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~ 197 (1075)
T KOG2171|consen 118 ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEV 197 (1075)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHH
Confidence 455666666666554333 3344555555544455567788875555556776667744 445555442
Q ss_pred hchhhhHHHHHHHHHHHhcCCChHHHHHHHHhh
Q 026338 75 LKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCG 107 (240)
Q Consensus 75 ~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~ 107 (240)
.+...++|.++.++...+.++|.-+.|.+.-++
T Consensus 198 ~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l 230 (1075)
T KOG2171|consen 198 DKFRDLLPSLLNVLQEVIQDGDDDAAKSALEAL 230 (1075)
T ss_pred HHHHHHhHHHHHHhHhhhhccchHHHHHHHHHH
Confidence 123356788888888888877776666655544
No 126
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=26.75 E-value=6.2e+02 Score=26.70 Aligned_cols=96 Identities=13% Similarity=0.120 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhch------hhhHHHHHHHHHHHhcCCChHH
Q 026338 26 LSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA------MEHSSILMPVLLAFLRDGDSGV 99 (240)
Q Consensus 26 l~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~------~e~~~~~v~~L~~LL~d~d~~V 99 (240)
.+.|..+-+.+.+ ..-+..+.+.|+++..+.++.+|-++..|+..-..+. .+-...+++.+....+|.+..|
T Consensus 353 ~d~l~~~~d~~~n--s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~V 430 (815)
T KOG1820|consen 353 RDALLKALDAILN--STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDV 430 (815)
T ss_pred HHHHHHHHHHHHh--cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHH
Confidence 3555555555554 3335677788888877888877777777775433321 1347777888888889999999
Q ss_pred HHHHHHhhhhhhHHHHHHHhhhhh
Q 026338 100 AGKSIVCGTNFFCRVLEEITMQFR 123 (240)
Q Consensus 100 ~K~aI~~~t~lY~~~l~~~~~~~~ 123 (240)
-+-+--+++.+|+..=+.+..+.+
T Consensus 431 R~Aa~e~~~~v~k~~Ge~~~~k~L 454 (815)
T KOG1820|consen 431 RKAALEAVAAVMKVHGEEVFKKLL 454 (815)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999988877777654
No 127
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=26.51 E-value=2.7e+02 Score=20.61 Aligned_cols=65 Identities=15% Similarity=0.215 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc
Q 026338 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLK 76 (240)
Q Consensus 6 ~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~ 76 (240)
+.++-.+|.++-..+|..+=.. .++|+- -|.+.++++-.++....+.+..-|+.++.++...+..
T Consensus 2 rk~i~~~l~ey~~~~d~~ea~~---~l~el~---~~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~ 66 (113)
T PF02847_consen 2 RKKIFSILMEYFSSGDVDEAVE---CLKELK---LPSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKR 66 (113)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHH---HHHHTT----GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhcCCCHHHHHH---HHHHhC---CCccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhc
Confidence 4567778888888788544444 445542 3367788888888777777888999999999888754
No 128
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=26.37 E-value=4.7e+02 Score=28.76 Aligned_cols=93 Identities=20% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcC--CChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHH
Q 026338 6 RDQALSLLAAANNH--GDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSI 83 (240)
Q Consensus 6 ~~~v~~lln~A~~~--~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~ 83 (240)
|+-+++.+-.+... .|. +.-.+.+++|. +|++-+.+=-.|-++-+|--+.+.++.+|..+......
T Consensus 329 Rnavlei~~n~V~~~l~d~-e~~~~sk~~r~-----------~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~ 396 (1251)
T KOG0414|consen 329 RNAVLEICANLVASELRDE-ELEEMSKSLRD-----------ELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGS 396 (1251)
T ss_pred HHHHHHHHHHHHHHHhcch-hhhHHHHHHHH-----------HHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccH
Q ss_pred HHHHHHHH---hcCCChHHHHHHHHhhhhh
Q 026338 84 LMPVLLAF---LRDGDSGVAGKSIVCGTNF 110 (240)
Q Consensus 84 ~v~~L~~L---L~d~d~~V~K~aI~~~t~l 110 (240)
.-+.+... |.|.+..|-|.||+-+..+
T Consensus 397 ~~eV~~la~grl~DkSslVRk~Ai~Ll~~~ 426 (1251)
T KOG0414|consen 397 RTEVLELAIGRLEDKSSLVRKNAIQLLSSL 426 (1251)
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHH
No 129
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=26.30 E-value=6.5e+02 Score=29.58 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=52.2
Q ss_pred hhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhh-----HHHHHHHHHHHhcCCChHHHHHHHHhhhhhhH
Q 026338 46 ELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH-----SSILMPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (240)
Q Consensus 46 ~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~-----~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~ 112 (240)
+-+|.+.++....+..+++..+..|+.+|..+.+. ....++.|..+|...+..+.|.+..+.+++++
T Consensus 609 ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~ 680 (2102)
T PLN03200 609 DALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSR 680 (2102)
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence 46677777777778889999999998888755443 23456678888888888899999999888884
No 130
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=25.78 E-value=6.6e+02 Score=24.89 Aligned_cols=89 Identities=15% Similarity=0.157 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHhhcCCC---hHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcC-CchhhHHHHHHHHHHHHhhchhhh
Q 026338 5 SRDQALSLLAAANNHGD---LAVKLSSLKQVRGILSSADPSLAAELFPYLVELQS-SPESLVRKSLIETIEDIGLKAMEH 80 (240)
Q Consensus 5 ~~~~v~~lln~A~~~~d---~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~-d~~~~vRk~~~~fiee~~~~~~e~ 80 (240)
..+++++.++......| ..+-...|+++..-+-.-+.. -..++..|+.+-= +.+..+++-..+|+...+..++.+
T Consensus 30 ~Y~~L~~~l~~~~~~~d~~~~~~l~~~L~~L~~~Vs~Ld~~-~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~~~y 108 (563)
T PF05327_consen 30 QYDELVEQLSDPSESKDAISVSQLIRWLKALSSCVSLLDSS-CKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQPKY 108 (563)
T ss_dssp HHHHHHHHHHS-TT-TTS--HHHHHHHHHHHHHGGGGG-SC-CHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH-GGG
T ss_pred HHHHHHHHHcccccCcccccHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhhHHH
Confidence 34566666643322233 234556666666665433444 4677888877732 467788999999999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 026338 81 SSILMPVLLAFLRD 94 (240)
Q Consensus 81 ~~~~v~~L~~LL~d 94 (240)
+..|+..|-..+..
T Consensus 109 l~~vl~~LV~~f~p 122 (563)
T PF05327_consen 109 LSPVLSMLVKNFIP 122 (563)
T ss_dssp HHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHhccC
Confidence 99998888877653
No 131
>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.
Probab=25.37 E-value=2.4e+02 Score=19.61 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=34.0
Q ss_pred CCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhH
Q 026338 56 SSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (240)
Q Consensus 56 ~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~ 112 (240)
.||..+.|+...+.|++-+-.+.+.+..++.. .|.=.++..=+-.+.+++.+.-
T Consensus 2 ~DP~~DFr~SM~EMI~~~~i~~~~~LeeLL~c---YL~LN~~~~H~~Iv~aF~dv~~ 55 (59)
T PF04844_consen 2 SDPYEDFRESMVEMIEENGIRDWDDLEELLAC---YLSLNSPEHHKFIVEAFVDVWV 55 (59)
T ss_pred CCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH---HHHhCChhhhhHHHHHHHHHHH
Confidence 46778999999999998777766666655432 2333334444455555555543
No 132
>PRK13342 recombination factor protein RarA; Reviewed
Probab=25.00 E-value=5e+02 Score=24.41 Aligned_cols=62 Identities=21% Similarity=0.296 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHH
Q 026338 29 LKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLA 90 (240)
Q Consensus 29 L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~ 90 (240)
+....+-+-..||.-.-.++-.+++-+.|+..-.||.+.-..|+++..+++.+..++.+...
T Consensus 234 isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~ 295 (413)
T PRK13342 234 ISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADA 295 (413)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHH
Confidence 33333333334554333445555555556666666666666666666666655555544443
No 133
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=24.43 E-value=3.3e+02 Score=20.95 Aligned_cols=55 Identities=22% Similarity=0.360 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhc---CCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHH
Q 026338 7 DQALSLLAAANN---HGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIED 72 (240)
Q Consensus 7 ~~v~~lln~A~~---~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee 72 (240)
|.++.-++.|.. .+|...+-..|.++++++. ++.. -|. .+...++.+.+..+-..
T Consensus 27 d~ai~~l~~a~~a~~~~~~~~~~~~l~ka~~Ii~--------~L~~-~Ld--~e~g~eia~~L~~lY~y 84 (122)
T PF02561_consen 27 DGAIEFLKQAKEAIEQGDIEEKNEALQKAQDIIT--------ELQS-SLD--FEKGGEIADNLFRLYDY 84 (122)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH--------HHHH-TCC--TTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------HHHh-hcC--CCCCcHHHHHHHHHHHH
Confidence 344555555553 4888888888999988883 3333 222 23346677766665543
No 134
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=23.56 E-value=8.8e+02 Score=25.51 Aligned_cols=144 Identities=11% Similarity=0.120 Sum_probs=82.8
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHH---HHhhc--CCchhhHHHHHHHHHHHHhhchh
Q 026338 4 VSRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPY---LVELQ--SSPESLVRKSLIETIEDIGLKAM 78 (240)
Q Consensus 4 ~~~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~---vl~~~--~d~~~~vRk~~~~fiee~~~~~~ 78 (240)
++.+++.+..|.++.+-. .-=...+++++|+.- ...|-.+|+.. ++..- ......+=+|++.|++..-..++
T Consensus 2 ~~~~r~~~If~k~Q~s~a-gh~~kl~~k~~em~t--~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~ 78 (892)
T KOG2025|consen 2 SSLERMQLIFNKIQQSDA-GHYSKLLAKVMEMLT--AHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDK 78 (892)
T ss_pred hHHHHHHHHHHHHHhhhc-chHHHHHHHHHHhhh--HhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCc
Confidence 467888899998887511 112456677777662 22233444442 22221 12234788999999987765444
Q ss_pred hhHHHHHHHHHHHhc---CCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCC
Q 026338 79 EHSSILMPVLLAFLR---DGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGL 155 (240)
Q Consensus 79 e~~~~~v~~L~~LL~---d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n 155 (240)
+.= -+-+++..+|+ ..|-.|-+|+.|-.+ .+.+.. + .-++.. +..++..++..+.| .-
T Consensus 79 e~D-lV~~~f~hlLRg~Eskdk~VRfrvlqila----~l~d~~-------~---eidd~v---fn~l~e~l~~Rl~D-re 139 (892)
T KOG2025|consen 79 EED-LVAGTFYHLLRGTESKDKKVRFRVLQILA----LLSDEN-------A---EIDDDV---FNKLNEKLLIRLKD-RE 139 (892)
T ss_pred hhh-HHHHHHHHHHhcccCcchhHHHHHHHHHH----HHhccc-------c---ccCHHH---HHHHHHHHHHHHhc-cC
Confidence 321 12234555555 457788888776433 333211 1 113333 45577788874444 45
Q ss_pred CchHHHHHHHHhHH
Q 026338 156 VGTKLLALKFLETH 169 (240)
Q Consensus 156 ~Gvr~~aiKF~e~v 169 (240)
..||+.|++-+.+.
T Consensus 140 p~VRiqAv~aLsrl 153 (892)
T KOG2025|consen 140 PNVRIQAVLALSRL 153 (892)
T ss_pred chHHHHHHHHHHHH
Confidence 57999999887664
No 135
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.53 E-value=7e+02 Score=28.38 Aligned_cols=109 Identities=22% Similarity=0.195 Sum_probs=63.2
Q ss_pred hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhch-----hhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHH
Q 026338 43 LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA-----MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEE 117 (240)
Q Consensus 43 ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~-----~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~ 117 (240)
++..++|++.-++.||+..|++..+++- .+.-.+ .+|+..+++-|..=+.+.-=-|--.+.++ -.-++
T Consensus 995 ~l~kLIPrLyRY~yDP~~~Vq~aM~sIW-~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclA----L~dLl-- 1067 (1702)
T KOG0915|consen 995 YLKKLIPRLYRYQYDPDKKVQDAMTSIW-NALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLA----LADLL-- 1067 (1702)
T ss_pred HHHHhhHHHhhhccCCcHHHHHHHHHHH-HHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH----HHHHH--
Confidence 6789999999999999999999999854 443322 35666665555443344322222222222 22223
Q ss_pred HhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHH
Q 026338 118 ITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETH 169 (240)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~v 169 (240)
|+.-..++.+...+.|+..=+..|+ --+|||-++=||...+
T Consensus 1068 ---~g~~~~~~~e~lpelw~~~fRvmDD--------IKEsVR~aa~~~~~~l 1108 (1702)
T KOG0915|consen 1068 ---QGRPFDQVKEKLPELWEAAFRVMDD--------IKESVREAADKAARAL 1108 (1702)
T ss_pred ---cCCChHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 4322112334555666665554444 4458898888877544
No 136
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=23.51 E-value=6.1e+02 Score=26.59 Aligned_cols=85 Identities=20% Similarity=0.158 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhcCCC--chHHhhhHHHHhhcCCchhhHHHHHHHHHHHHh----hchhhhHHHHHHHHHHHhcCCChHHH
Q 026338 27 SSLKQVRGILSSADP--SLAAELFPYLVELQSSPESLVRKSLIETIEDIG----LKAMEHSSILMPVLLAFLRDGDSGVA 100 (240)
Q Consensus 27 ~~L~q~relll~~~p--~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~----~~~~e~~~~~v~~L~~LL~d~d~~V~ 100 (240)
+-|..--+-+.+.++ .+++.++-.+|-+.-.++-.||.-+..+|.-+. -.+......+...+..-+.|.-|.|-
T Consensus 64 ~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VR 143 (892)
T KOG2025|consen 64 SFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVR 143 (892)
T ss_pred HHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHH
Confidence 444444444444444 488888888887777778889999988887653 34566777777777777788888888
Q ss_pred HHHHHhhhhhh
Q 026338 101 GKSIVCGTNFF 111 (240)
Q Consensus 101 K~aI~~~t~lY 111 (240)
.+|+.|.+-+-
T Consensus 144 iqAv~aLsrlQ 154 (892)
T KOG2025|consen 144 IQAVLALSRLQ 154 (892)
T ss_pred HHHHHHHHHHh
Confidence 88888877554
No 137
>PRK05685 fliS flagellar protein FliS; Validated
Probab=23.48 E-value=3.7e+02 Score=21.21 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=28.4
Q ss_pred cCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHH
Q 026338 18 NHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDI 73 (240)
Q Consensus 18 ~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~ 73 (240)
..+|.+++-..|.++++++. ++...+ + .+...++-+.+.++.+.+
T Consensus 47 ~~~~~~~~~~~l~ka~~Ii~--------eL~~sL-d--~e~ggeiA~~L~~LY~y~ 91 (132)
T PRK05685 47 EQGDIEAKGEYLSKAINIIN--------GLRNSL-D--MEKGGEVAKNLSALYDYM 91 (132)
T ss_pred HcCCHHHHHHHHHHHHHHHH--------HHHhhc-C--CccccHHHHHHHHHHHHH
Confidence 34788888888888888773 444322 2 344457777777666543
No 138
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=23.24 E-value=4e+02 Score=27.37 Aligned_cols=41 Identities=7% Similarity=0.115 Sum_probs=19.0
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhH
Q 026338 8 QALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFP 49 (240)
Q Consensus 8 ~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~ 49 (240)
+.++.+.+-+...+.-.++...+..-+++ ..+|.++.+|.|
T Consensus 227 klv~hf~~n~smknq~a~V~lvr~~~~ll-~~n~q~~~q~rp 267 (898)
T COG5240 227 KLVEHFRGNASMKNQLAGVLLVRATVELL-KENSQALLQLRP 267 (898)
T ss_pred HHHHHhhcccccccchhheehHHHHHHHH-HhChHHHHHHHH
Confidence 33444444333333334455555555554 355555555555
No 139
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=22.96 E-value=90 Score=30.08 Aligned_cols=51 Identities=24% Similarity=0.261 Sum_probs=34.6
Q ss_pred CchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhc
Q 026338 41 PSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLR 93 (240)
Q Consensus 41 p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL~ 93 (240)
|+|.++-++.-+++..|.+.-+|++.+.=+-..|+- +.++++.++|..||+
T Consensus 56 p~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~--d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 56 PSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG--DALSRVNDVLVQLLN 106 (460)
T ss_pred chhhhHHHHhhhccccccchhhHHHHHhccchhccC--chhhhhHHHHHHHHH
Confidence 444444444444555577788999886655555555 788888888888887
No 140
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=22.89 E-value=6.7e+02 Score=23.93 Aligned_cols=141 Identities=10% Similarity=-0.027 Sum_probs=81.1
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHH
Q 026338 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMP 86 (240)
Q Consensus 7 ~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~ 86 (240)
+..+++|-.|....+..+... ..+.-+....+|. .++.+++.-.|++..||.-+++-+.++. .+.+.+
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~--~aa~al~~~~~~~----~~~~L~~~L~d~~~~vr~aaa~ALg~i~------~~~a~~ 120 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVA--CAALALLAQEDAL----DLRSVLAVLQAGPEGLCAGIQAALGWLG------GRQAEP 120 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHH--HHHHHHhccCChH----HHHHHHHHhcCCCHHHHHHHHHHHhcCC------chHHHH
Confidence 345666777764423223322 2333333223332 2555555555777778888888776542 223344
Q ss_pred HHHHHhcCCChHHHHHHHHhhhhh----hHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHH-----HHHHhccCCCCc
Q 026338 87 VLLAFLRDGDSGVAGKSIVCGTNF----FCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDA-----VFAIALEPGLVG 157 (240)
Q Consensus 87 ~L~~LL~d~d~~V~K~aI~~~t~l----Y~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~-----Il~~~~d~~n~G 157 (240)
.|..+|.+++|.|..-++.+.+.. |+.+. ..+. +....--.+....+..+|.. +.. ..++.+..
T Consensus 121 ~L~~~L~~~~p~vR~aal~al~~r~~~~~~~L~-----~~L~-d~d~~Vra~A~raLG~l~~~~a~~~L~~-al~d~~~~ 193 (410)
T TIGR02270 121 WLEPLLAASEPPGRAIGLAALGAHRHDPGPALE-----AALT-HEDALVRAAALRALGELPRRLSESTLRL-YLRDSDPE 193 (410)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccChHHHHH-----HHhc-CCCHHHHHHHHHHHHhhccccchHHHHH-HHcCCCHH
Confidence 677788999998877776555544 55444 3332 21112346677777777644 334 66889999
Q ss_pred hHHHHHHHH
Q 026338 158 TKLLALKFL 166 (240)
Q Consensus 158 vr~~aiKF~ 166 (240)
||-.|+-=+
T Consensus 194 VR~aA~~al 202 (410)
T TIGR02270 194 VRFAALEAG 202 (410)
T ss_pred HHHHHHHHH
Confidence 998888443
No 141
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=22.56 E-value=9.5e+02 Score=25.58 Aligned_cols=72 Identities=13% Similarity=0.101 Sum_probs=50.4
Q ss_pred hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc-----hhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHH
Q 026338 43 LAAELFPYLVELQSSPESLVRKSLIETIEDIGLK-----AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRV 114 (240)
Q Consensus 43 ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~-----~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~ 114 (240)
+++.+.-++|-.-.++++.+|.+.++++..+... ..+++..+=-.|...|..++|.|+-.++-+..+||-..
T Consensus 796 ylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvi 872 (1172)
T KOG0213|consen 796 YLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVI 872 (1172)
T ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhc
Confidence 4566666676666788999999999999886532 22344444445666678888988877777767666554
No 142
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=22.56 E-value=1.1e+03 Score=26.46 Aligned_cols=135 Identities=14% Similarity=0.190 Sum_probs=70.9
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHh-----hhHHHHhhcCCchhhHHHHHHHHHHHH-----h--
Q 026338 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAE-----LFPYLVELQSSPESLVRKSLIETIEDI-----G-- 74 (240)
Q Consensus 7 ~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~-----~l~~vl~~~~d~~~~vRk~~~~fiee~-----~-- 74 (240)
|++++++..-.-+. +-++.|-.|-=-++..+|+|.|. ++|+++.--.-++..+-|..+..|.+. |
T Consensus 2006 ek~lelm~~~~peq---h~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~ 2082 (2235)
T KOG1789|consen 2006 EKVLELMSRPTPEQ---HELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCD 2082 (2235)
T ss_pred HHHHHHhcCCCccc---chhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHH
Confidence 45555554333222 35677777776677889988865 578776431111111223333333331 2
Q ss_pred ---------------hchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHH
Q 026338 75 ---------------LKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWM 139 (240)
Q Consensus 75 ---------------~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m 139 (240)
++.+..+.-..++|..+..-+....+-++..|+ +.|.+|.++ .|+--+.++.+.+.-=+..
T Consensus 2083 AMA~l~~i~~~m~~mkK~~~~~GLA~EalkR~~~r~~~eLVAQ~LK~g--LvpyLL~LL--d~~tL~~~~~~aas~A~Iv 2158 (2235)
T KOG1789|consen 2083 AMAQLPCIDGIMKSMKKQPSLMGLAAEALKRLMKRNTGELVAQMLKCG--LVPYLLQLL--DSSTLNGVSNGAAARAEIV 2158 (2235)
T ss_pred HHhccccchhhHHHHHhcchHHHHHHHHHHHHHHHhHHHHHHHHhccC--cHHHHHHHh--ccccccccCchhHHHHHHH
Confidence 244556666666666665433333333444443 556566444 4443233445666666666
Q ss_pred HHHHHHHHH
Q 026338 140 VRFKDAVFA 148 (240)
Q Consensus 140 ~~~K~~Il~ 148 (240)
..+|..|..
T Consensus 2159 ~aLk~~~~~ 2167 (2235)
T KOG1789|consen 2159 DALKSAILD 2167 (2235)
T ss_pred HHHHHHHHH
Confidence 777766665
No 143
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=22.34 E-value=4.1e+02 Score=21.21 Aligned_cols=78 Identities=22% Similarity=0.232 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCCh-HHHHHHHHhh
Q 026338 29 LKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDS-GVAGKSIVCG 107 (240)
Q Consensus 29 L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~-~V~K~aI~~~ 107 (240)
|++++.++-.-.|+-++.+..++.....+...+..+.++++|-+.+...+.+++. ...|...+....+ .+....+..+
T Consensus 1 ~r~v~~~lnklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~~~-~a~l~~~l~~~~~~~f~~~ll~~~ 79 (209)
T PF02854_consen 1 LRKVRGILNKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFSPL-YARLCAALNSRFPSEFRSLLLNRC 79 (209)
T ss_dssp HHHHHHHHHHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGHHH-HHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CchHHHHHHHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHHHH-HHHHHHHHhccchhhHHHHHHHHH
Confidence 4556666644466666666666665533325566677777666655555544432 2233333443333 4444444433
No 144
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=22.23 E-value=5.8e+02 Score=26.36 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=25.3
Q ss_pred hhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhh
Q 026338 77 AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTN 109 (240)
Q Consensus 77 ~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~ 109 (240)
+++...++++.|..-++|.++.+.-.+++..++
T Consensus 383 ~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lpt 415 (700)
T KOG2137|consen 383 PEEVKEKILPLLYRSLEDSDVQIQELALQILPT 415 (700)
T ss_pred hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhH
Confidence 456788899988888999988887777765443
No 145
>TIGR02277 PaaX_trns_reg phenylacetic acid degradation operon negative regulatory protein PaaX. This transcriptional regulator is always found in association with operons believed to be involved in the degradation of phenylacetic acid. The gene product has been shown to bind to the promoter sites and repress their transcription.
Probab=22.14 E-value=1.6e+02 Score=26.61 Aligned_cols=74 Identities=16% Similarity=0.121 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHH
Q 026338 23 AVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGK 102 (240)
Q Consensus 23 ~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~ 102 (240)
..++-...+.|.+++ .||.|.++++|. ..+...-|..+.++..........++..+..+....|...++...+|
T Consensus 204 ~~r~lLvh~~Rr~l~-~DP~LP~elLP~-----dW~G~~Ar~lf~~l~~~L~~~a~~~~~~~~~~~~g~lp~~~~~~~~r 277 (280)
T TIGR02277 204 VARLLLVHEYRRVVL-RDPLLPEELLPA-----DWPGDAARHLCARIYRTLAPPAERFLDSVGATENGPLPKAKELNFLR 277 (280)
T ss_pred HHHHHHHHHHHHHhh-cCCCCChhhCCC-----CCCcHHHHHHHHHHHHHHhHHHHHHHHHHccccCCCCCCCchhHHhh
Confidence 456677778888885 999999999984 45778889999888888777777777766655443444444554443
No 146
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=22.13 E-value=4.5e+02 Score=28.17 Aligned_cols=100 Identities=21% Similarity=0.364 Sum_probs=66.9
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCC---chHHhhhHHHHhhcCCch---hhHHHHHHHHHHHHhhchh---
Q 026338 8 QALSLLAAANNHGDLAVKLSSLKQVRGILSSADP---SLAAELFPYLVELQSSPE---SLVRKSLIETIEDIGLKAM--- 78 (240)
Q Consensus 8 ~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p---~ll~~~l~~vl~~~~d~~---~~vRk~~~~fiee~~~~~~--- 78 (240)
.+.-||=||..-+|...|++.|+-...++....+ .-++.++|..+.+..|.+ ..||--..+-++-.-..-|
T Consensus 909 ~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~ 988 (1030)
T KOG1967|consen 909 MLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKS 988 (1030)
T ss_pred hHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcc
Confidence 4567888898889999999999999998864332 345778888888766654 5677666665554433111
Q ss_pred --hhHHHHHHHHHHHhcCCChHHHHHHHHhh
Q 026338 79 --EHSSILMPVLLAFLRDGDSGVAGKSIVCG 107 (240)
Q Consensus 79 --e~~~~~v~~L~~LL~d~d~~V~K~aI~~~ 107 (240)
-+-+.++..|..-|.|.--.|-|.|+.|=
T Consensus 989 l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 989 LLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred cccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 24566666777777776555556655543
No 147
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=22.08 E-value=4e+02 Score=26.07 Aligned_cols=54 Identities=28% Similarity=0.336 Sum_probs=36.9
Q ss_pred CCchHHhhhHHHHhhc----CCc--hhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhc
Q 026338 40 DPSLAAELFPYLVELQ----SSP--ESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLR 93 (240)
Q Consensus 40 ~p~ll~~~l~~vl~~~----~d~--~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL~ 93 (240)
|.+++..++|-+++-. .++ ..+|||-+.+++-.+|+.+|.++...-.-|...+.
T Consensus 256 d~sLi~~L~pvlleRs~~Lfp~~~y~~eV~rvlss~ll~lfk~~PsLvv~l~~~ilef~g 315 (459)
T PF14764_consen 256 DGSLICQLLPVLLERSDALFPIPQYQAEVRRVLSSQLLALFKRHPSLVVELSKEILEFLG 315 (459)
T ss_pred CHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhCcHHHHHhHHHHHHHhc
Confidence 4445555555554321 222 35999999999999999999988776666666655
No 148
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=22.03 E-value=4.5e+02 Score=23.37 Aligned_cols=60 Identities=13% Similarity=0.146 Sum_probs=40.3
Q ss_pred chhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHH
Q 026338 76 KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVF 147 (240)
Q Consensus 76 ~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il 147 (240)
..+.+.+.+++.|..=|..+.+.|.+.+.++...+.+.-= . ..+.++....|+. +|..|+
T Consensus 201 s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~-~--------~~~~~~~~~iw~~---lk~Eil 260 (262)
T PF14500_consen 201 STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYG-A--------DSLSPHWSTIWNA---LKFEIL 260 (262)
T ss_pred CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCC-H--------HHHHHHHHHHHHH---HHHHHc
Confidence 4567888999999988888888888777777665544111 0 0133667888876 455554
No 149
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=21.66 E-value=1.7e+02 Score=23.85 Aligned_cols=40 Identities=10% Similarity=0.033 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhh
Q 026338 81 SSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITM 120 (240)
Q Consensus 81 ~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~ 120 (240)
-..+-+.+..++.+.+..-..+++.+.+.+||...+..+.
T Consensus 41 ~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 41 KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 3334445555566555557788999999999999987754
No 150
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=21.55 E-value=6.3e+02 Score=23.11 Aligned_cols=134 Identities=17% Similarity=0.220 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhcCCCchHHhhhHHHHhh-cCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHH
Q 026338 27 SSLKQVRGILSSADPSLAAELFPYLVEL-QSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIV 105 (240)
Q Consensus 27 ~~L~q~relll~~~p~ll~~~l~~vl~~-~~d~~~~vRk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~ 105 (240)
+.+++|...+. -..++|..+.+. ...++.++..-+..++...|.-.-|.+. .-..+.+...+.++=+.-.
T Consensus 130 ~~~k~A~~~fq-----~AAg~f~~l~~~~~~~~s~Dl~~~~l~~l~~l~lAqAQe~~----~~ka~~~~~~~~liAKLa~ 200 (377)
T PF03097_consen 130 EGLKEACNYFQ-----RAAGIFQYLRENFKDSPSPDLSPEVLSALSNLMLAQAQECF----YEKAIADKKKPSLIAKLAA 200 (377)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHSSS-SSGGGSHHHHHHHHHHHHHHHHHHH----HHHHHHTTG-HHHHHHHHH
T ss_pred hhHHHHHHHHH-----HHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHHHHHHHHHH----HHHHHHccCchHHHHHHHH
Confidence 55666666553 124555555443 3455667888888888877765444322 1111122334444433444
Q ss_pred hhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHH---------hccCCCCchHHHHHHHHhHHhhhcc
Q 026338 106 CGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAI---------ALEPGLVGTKLLALKFLETHVLLFT 174 (240)
Q Consensus 106 ~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~---------~~d~~n~Gvr~~aiKF~e~vIl~qT 174 (240)
.+...|..+...+ ............|..+..+|...+.- ..+.+..|.-++.++..+..+-.-.
T Consensus 201 ~~~~~Y~~a~~~l-----~~~~~~~~~~~~w~~~~~~K~~~~~A~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~a~ 273 (377)
T PF03097_consen 201 QASELYDEAHEAL-----QSSPLSESIPKDWRSYVQVKSAYYRALAHYHQALAAEEAKKYGEAIARLRRAEEALKEAS 273 (377)
T ss_dssp HHHHHHHHHHHHH-----TTCHHHHCSHCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----hcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence 5588999998444 32221223468899999999988542 2357888999988888777655444
No 151
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=21.14 E-value=6.6e+02 Score=23.16 Aligned_cols=101 Identities=13% Similarity=0.165 Sum_probs=63.6
Q ss_pred CCchhhHHHHHHHHHHHHhhchhhh--HHHHHHHHHHHhcC-CChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchH
Q 026338 56 SSPESLVRKSLIETIEDIGLKAMEH--SSILMPVLLAFLRD-GDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWL 132 (240)
Q Consensus 56 ~d~~~~vRk~~~~fiee~~~~~~e~--~~~~v~~L~~LL~d-~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~ 132 (240)
..++.++-.-+..++..+|.-.-|- ..+++ ... .+..+.|-+.+ .+.+|..++..+- ...+....
T Consensus 171 ~~~s~Dl~~~~l~~l~~lmLAQAQE~~~~Kai------~~~~k~~liAKLa~q-v~~~Y~~a~~~l~-----~~~~~~~~ 238 (346)
T cd09240 171 QEPTPDLSPDTLSALSALMLAQAQEVFYLKAT------RDKMKDAIIAKLAAQ-AADYYGDAFKQCQ-----REDVRSLL 238 (346)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH------hccCchhHHHHHHHH-HHHHHHHHHHHHh-----cchhcccc
Confidence 4566677777888888887654442 22222 122 23444555444 4678999985442 22222345
Q ss_pred HHHHHHHHHHHHHHHHH---------hccCCCCchHHHHHHHHhH
Q 026338 133 EELWTWMVRFKDAVFAI---------ALEPGLVGTKLLALKFLET 168 (240)
Q Consensus 133 ~~~W~~m~~~K~~Il~~---------~~d~~n~Gvr~~aiKF~e~ 168 (240)
...|..+..+|...+.- ..+.+..|..++..|..+.
T Consensus 239 ~~~W~~~~~~K~~~f~a~A~y~~a~~~~e~~k~GeaIa~L~~A~~ 283 (346)
T cd09240 239 PKDWIPVLAGKQAYFHALAEYHQSLVAKAQKKFGEEIARLQHALE 283 (346)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Confidence 78899999999887642 2246789999999888766
No 152
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.92 E-value=5.4e+02 Score=27.00 Aligned_cols=40 Identities=18% Similarity=0.113 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCC--chHHhhhHHHHhhcCCchhhHHHHH
Q 026338 27 SSLKQVRGILSSADP--SLAAELFPYLVELQSSPESLVRKSL 66 (240)
Q Consensus 27 ~~L~q~relll~~~p--~ll~~~l~~vl~~~~d~~~~vRk~~ 66 (240)
..|=.+-.+++|-|+ +++..-..-+=.|-+++.+.+|=..
T Consensus 308 aVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLa 349 (938)
T KOG1077|consen 308 AVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLA 349 (938)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhh
Confidence 445555566666543 4555555544444444444444433
No 153
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=20.78 E-value=9.5e+02 Score=26.41 Aligned_cols=97 Identities=20% Similarity=0.240 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHhcCCCchHHhhhHHHH----hhcCCchhhHHHHHHHHHHHHhhchhh-
Q 026338 6 RDQALSLLAAANNH-GDLAVKLSSLKQVRGILSSADPSLAAELFPYLV----ELQSSPESLVRKSLIETIEDIGLKAME- 79 (240)
Q Consensus 6 ~~~v~~lln~A~~~-~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl----~~~~d~~~~vRk~~~~fiee~~~~~~e- 79 (240)
...|+..|-.+.+. .-.+.|...++-..-.+.+-|- ...+|.+| ++..|+-+.+||.+++-+.|.-..++-
T Consensus 574 e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~---~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~ 650 (1529)
T KOG0413|consen 574 EKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDE---ASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRL 650 (1529)
T ss_pred HHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccch---hhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchh
Confidence 34567777777764 2233666777777777766665 34445433 456799999999999999997665553
Q ss_pred --hHHHHHHHHHHHhcCCChHHHHHHHH
Q 026338 80 --HSSILMPVLLAFLRDGDSGVAGKSIV 105 (240)
Q Consensus 80 --~~~~~v~~L~~LL~d~d~~V~K~aI~ 105 (240)
+..+-+.+|..+++|.+.-|.-++.-
T Consensus 651 ~~~~~~wl~~li~~~~d~es~v~e~a~~ 678 (1529)
T KOG0413|consen 651 FSLSSKWLHTLISMLNDTESDVTEHARK 678 (1529)
T ss_pred hhhhHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34444556777778887777766543
No 154
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.57 E-value=5e+02 Score=27.52 Aligned_cols=127 Identities=14% Similarity=0.129 Sum_probs=67.1
Q ss_pred ChHHHHHHHHhhhhhhHHH-HHHHhhhhhccCCccchHHHHHHHHHHHH--HHH---HHHhccCCCCchHHHHHHHHhHH
Q 026338 96 DSGVAGKSIVCGTNFFCRV-LEEITMQFRWHGKVERWLEELWTWMVRFK--DAV---FAIALEPGLVGTKLLALKFLETH 169 (240)
Q Consensus 96 d~~V~K~aI~~~t~lY~~~-l~~~~~~~~~~~~~~~~~~~~W~~m~~~K--~~I---l~~~~d~~n~Gvr~~aiKF~e~v 169 (240)
||-.+|.+.-++..++..- +.++.++. + ..++-..|-+=.-+| +.| ++ .|+..+-+||..+|+.++.+
T Consensus 76 D~E~ik~~LdTl~il~~~dd~~~v~dds----~-qsdd~g~~iae~fik~qd~I~lll~-~~e~~DF~VR~~aIqLlsal 149 (970)
T KOG0946|consen 76 DPEIIKYALDTLLILTSHDDSPEVMDDS----T-QSDDLGLWIAEQFIKNQDNITLLLQ-SLEEFDFHVRLYAIQLLSAL 149 (970)
T ss_pred CHHHHHHHHHHHHHHHhcCcchhhcccc----h-hhhHHHHHHHHHHHcCchhHHHHHH-HHHhhchhhhhHHHHHHHHH
Confidence 6777777777666655432 22333221 1 123445564433343 444 55 77899999999999999876
Q ss_pred hhhccCC---------C---------CCcccccccCCCccc-cccccCCCCCCCChhhHHHHHHHHHHHHHHHHhhhcCC
Q 026338 170 VLLFTSD---------S---------NDFENFTKEGSKQTF-NISWLSGGHPFLDPVSLTSEANRMLGTLMDLLQSACNL 230 (240)
Q Consensus 170 Il~qT~~---------~---------~d~~~~~~~~~~~d~-sl~~vP~~Hp~l~~~~Le~Ea~~lL~~LL~~l~~~~~~ 230 (240)
+=+-.+. . .|++.|-|.+ ++ =|.-+-.+.|-+ ++|-+ =...|++|++.+.+++-.
T Consensus 150 ls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe---~iLlL~eL~k~n~~I--QKlVA-FENaFerLfsIIeeEGg~ 223 (970)
T KOG0946|consen 150 LSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNE---AILLLSELVKDNSSI--QKLVA-FENAFERLFSIIEEEGGL 223 (970)
T ss_pred HhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchh---HHHHHHHHHccCchH--HHHHH-HHHHHHHHHHHHHhcCCC
Confidence 5332211 0 1333332221 11 111122222222 22221 136799999999998877
Q ss_pred CCce
Q 026338 231 PGSV 234 (240)
Q Consensus 231 ~~~~ 234 (240)
-|+.
T Consensus 224 dGgI 227 (970)
T KOG0946|consen 224 DGGI 227 (970)
T ss_pred CCcc
Confidence 7754
No 155
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=20.49 E-value=2.2e+02 Score=26.16 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=34.7
Q ss_pred hHHHHHH----HHHHHHhh------------chhhhHHHHHHHHHHHhcCCChHHHHHHH
Q 026338 61 LVRKSLI----ETIEDIGL------------KAMEHSSILMPVLLAFLRDGDSGVAGKSI 104 (240)
Q Consensus 61 ~vRk~~~----~fiee~~~------------~~~e~~~~~v~~L~~LL~d~d~~V~K~aI 104 (240)
++|.+++ ++|||=|- +..+.+..+|++.+.=|.|.|..|.|.-|
T Consensus 93 eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFv 152 (305)
T PF15290_consen 93 ELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFV 152 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHh
Confidence 6677776 68888772 33457999999999999999999998744
Done!