Your job contains 1 sequence.
>026341
MCISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMA
NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALEST
DRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGR
SPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRSRSPVRRSRT
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026341
(240 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2079502 - symbol:RS31 "arginine/serine-rich sp... 695 1.7e-68 1
TAIR|locus:2039975 - symbol:RS31a "arginine/serine-rich s... 649 1.2e-63 1
TAIR|locus:2131864 - symbol:RS40 "arginine/serine-rich sp... 533 2.4e-51 1
TAIR|locus:2173088 - symbol:RS41 "arginine/serine-rich sp... 516 1.5e-49 1
DICTYBASE|DDB_G0275409 - symbol:DDB_G0275409 "RNA-binding... 173 1.6e-14 2
UNIPROTKB|F1NPM7 - symbol:TRA2A "Uncharacterized protein"... 165 3.8e-12 1
MGI|MGI:1933972 - symbol:Tra2a "transformer 2 alpha homol... 162 9.2e-12 1
ZFIN|ZDB-GENE-040426-1415 - symbol:zgc:65772 "zgc:65772" ... 157 1.8e-11 1
ZFIN|ZDB-GENE-040426-1467 - symbol:srsf1b "serine/arginin... 156 3.0e-11 1
UNIPROTKB|Q06AA6 - symbol:TRA2A "Uncharacterized protein"... 157 3.4e-11 1
UNIPROTKB|E1C875 - symbol:TRA2A "Uncharacterized protein"... 153 4.5e-11 1
UNIPROTKB|Q13595 - symbol:TRA2A "Transformer-2 protein ho... 156 4.6e-11 1
UNIPROTKB|E2R4B2 - symbol:TRA2A "Uncharacterized protein"... 155 5.6e-11 1
UNIPROTKB|Q2KJ71 - symbol:TRA2A "Transformer 2 alpha homo... 155 5.8e-11 1
UNIPROTKB|B4DQI6 - symbol:TRA2A "cDNA FLJ50614, highly si... 148 1.5e-10 1
RGD|1562563 - symbol:Tra2a "transformer 2 alpha homolog (... 154 1.5e-10 1
GENEDB_PFALCIPARUM|PFE0865c - symbol:PFE0865c "splicing f... 154 1.9e-10 1
UNIPROTKB|Q8I3T5 - symbol:PFE0865c "Splicing factor, puta... 154 1.9e-10 1
UNIPROTKB|B4DUA9 - symbol:TRA2A "Transformer-2 protein ho... 146 2.5e-10 1
ZFIN|ZDB-GENE-040426-1391 - symbol:tra2a "transformer-2 a... 152 6.2e-10 1
UNIPROTKB|E2RJL3 - symbol:SRSF1 "Uncharacterized protein"... 151 6.4e-10 1
UNIPROTKB|J3KTL2 - symbol:SRSF1 "Serine/arginine-rich-spl... 151 6.4e-10 1
UNIPROTKB|Q0VCY7 - symbol:SRSF1 "Serine/arginine-rich spl... 150 8.7e-10 1
UNIPROTKB|Q07955 - symbol:SRSF1 "Serine/arginine-rich spl... 150 8.7e-10 1
UNIPROTKB|Q3YLA6 - symbol:SRSF1 "Serine/arginine-rich spl... 150 8.7e-10 1
MGI|MGI:98283 - symbol:Srsf1 "serine/arginine-rich splici... 150 8.7e-10 1
RGD|1587490 - symbol:Srsf1 "serine/arginine-rich splicing... 150 8.7e-10 1
UNIPROTKB|Q5R7H2 - symbol:SRSF1 "Serine/arginine-rich spl... 149 1.5e-09 1
UNIPROTKB|Q5ZML3 - symbol:SRSF1 "Serine/arginine-rich spl... 136 2.2e-09 2
ZFIN|ZDB-GENE-040426-2706 - symbol:srsf2a "serine/arginin... 145 3.7e-09 1
WB|WBGene00004701 - symbol:rsp-4 species:6239 "Caenorhabd... 140 4.1e-09 1
UNIPROTKB|Q09511 - symbol:rsp-4 "Probable splicing factor... 140 4.1e-09 1
RGD|1359713 - symbol:Rbm47 "RNA binding motif protein 47"... 148 4.5e-09 2
MGI|MGI:2384294 - symbol:Rbm47 "RNA binding motif protein... 145 1.8e-08 2
UNIPROTKB|B7Z8Z7 - symbol:RBM47 "cDNA FLJ51456, moderatel... 143 3.6e-08 2
UNIPROTKB|A0AV96 - symbol:RBM47 "RNA-binding protein 47" ... 143 4.4e-08 2
FB|FBgn0040284 - symbol:SF2 "SF2" species:7227 "Drosophil... 140 4.4e-08 1
UNIPROTKB|D6R9D6 - symbol:RBM47 "RNA-binding protein 47" ... 143 5.3e-08 1
RGD|1309495 - symbol:Srsf9 "serine/arginine-rich splicing... 131 5.8e-08 2
WB|WBGene00004702 - symbol:rsp-5 species:6239 "Caenorhabd... 132 6.0e-08 2
UNIPROTKB|Q10021 - symbol:rsp-5 "Probable splicing factor... 132 6.0e-08 2
UNIPROTKB|A6H7B7 - symbol:SFRS5 "SFRS5 protein" species:9... 139 7.5e-08 1
UNIPROTKB|E2R8E5 - symbol:SRSF5 "Uncharacterized protein"... 139 7.5e-08 1
UNIPROTKB|F1Q212 - symbol:RBM47 "RNA-binding protein 47" ... 142 7.8e-08 2
UNIPROTKB|Q9XSR3 - symbol:RBM47 "RNA-binding protein 47" ... 142 7.8e-08 2
UNIPROTKB|A4FUC6 - symbol:SFRS9 "Uncharacterized protein"... 136 8.0e-08 1
UNIPROTKB|Q13243 - symbol:SRSF5 "Serine/arginine-rich spl... 138 1.0e-07 1
UNIPROTKB|Q5JRI1 - symbol:SRSF10 "Serine/arginine-rich-sp... 125 1.0e-07 1
UNIPROTKB|F6RYN2 - symbol:RBM47 "Uncharacterized protein"... 140 1.4e-07 2
UNIPROTKB|F1S4H0 - symbol:RBM47 "Uncharacterized protein"... 140 1.4e-07 2
UNIPROTKB|E2RK20 - symbol:SRSF9 "Uncharacterized protein"... 134 1.6e-07 1
TAIR|locus:2025092 - symbol:SR45a "serine/arginine rich-l... 139 1.8e-07 1
ZFIN|ZDB-GENE-040426-1950 - symbol:srsf1a "serine/arginin... 101 1.9e-07 2
UNIPROTKB|F1RJJ0 - symbol:SRSF9 "Uncharacterized protein"... 133 2.1e-07 1
UNIPROTKB|Q3ZBU5 - symbol:FUSIP1 "Uncharacterized protein... 127 2.6e-07 1
UNIPROTKB|Q5JRI3 - symbol:SRSF10 "Serine/arginine-rich-sp... 127 2.6e-07 1
UNIPROTKB|F6T1J1 - symbol:SRSF4 "Serine/arginine-rich-spl... 119 2.7e-07 1
UNIPROTKB|Q13242 - symbol:SRSF9 "Serine/arginine-rich spl... 132 3.1e-07 1
MGI|MGI:104896 - symbol:Srsf9 "serine/arginine-rich splic... 132 3.1e-07 1
WB|WBGene00004700 - symbol:rsp-3 species:6239 "Caenorhabd... 99 3.4e-07 2
UNIPROTKB|Q9NEW6 - symbol:rsp-3 "Probable splicing factor... 99 3.4e-07 2
MGI|MGI:98287 - symbol:Srsf5 "serine/arginine-rich splici... 134 3.5e-07 1
RGD|3664 - symbol:Srsf5 "serine/arginine-rich splicing fa... 134 3.5e-07 1
UNIPROTKB|Q09167 - symbol:Srsf5 "Serine/arginine-rich spl... 134 3.5e-07 1
UNIPROTKB|E1BVJ8 - symbol:SRSF5A "Uncharacterized protein... 133 3.9e-07 1
UNIPROTKB|E1BVJ9 - symbol:RBM47 "Uncharacterized protein"... 137 4.0e-07 2
UNIPROTKB|E9PLB0 - symbol:RBM4B "RNA-binding protein 4B" ... 117 4.6e-07 1
TAIR|locus:2024770 - symbol:SR34 "Serine/Arginine-Rich Pr... 134 4.9e-07 1
UNIPROTKB|Q5ZLF9 - symbol:SRSF5 "Uncharacterized protein"... 115 7.9e-07 1
ZFIN|ZDB-GENE-030131-591 - symbol:srsf4 "serine/arginine-... 118 8.6e-07 2
UNIPROTKB|B4DJK0 - symbol:SRSF5 "Serine/arginine-rich-spl... 114 1.0e-06 1
UNIPROTKB|B4DUA4 - symbol:SRSF5 "cDNA FLJ57437, highly si... 114 1.0e-06 1
UNIPROTKB|G3V5K8 - symbol:SRSF5 "Serine/arginine-rich-spl... 114 1.0e-06 1
ZFIN|ZDB-GENE-040426-1938 - symbol:rbm4.3 "RNA binding mo... 120 1.2e-06 2
MGI|MGI:1890577 - symbol:Srsf4 "serine/arginine-rich spli... 123 1.2e-06 2
TAIR|locus:2133249 - symbol:SR34b "Serine/Arginine-Rich P... 130 1.3e-06 1
SGD|S000002840 - symbol:NPL3 "RNA-binding protein" specie... 113 1.7e-06 2
UNIPROTKB|Q13247 - symbol:SRSF6 "Serine/arginine-rich spl... 116 1.9e-06 2
RGD|1359241 - symbol:Srsf6 "serine/arginine-rich splicing... 116 3.0e-06 2
UNIPROTKB|G3V6S8 - symbol:Sfrs6 "Similar to dJ862K6.2.2 (... 116 3.0e-06 2
UNIPROTKB|F1NCV3 - symbol:SRSF5A "Uncharacterized protein... 116 3.0e-06 1
UNIPROTKB|H9KZ12 - symbol:H9KZ12 "Uncharacterized protein... 123 4.4e-06 2
RGD|1561347 - symbol:Srsf4 "serine/arginine-rich splicing... 123 5.0e-06 2
ZFIN|ZDB-GENE-030131-6986 - symbol:ncl "nucleolin" specie... 131 5.1e-06 1
UNIPROTKB|Q06AA0 - symbol:SRSF6 "Uncharacterized protein"... 115 5.5e-06 2
UNIPROTKB|O75494 - symbol:SRSF10 "Serine/arginine-rich sp... 124 6.3e-06 1
MGI|MGI:1333805 - symbol:Srsf10 "serine/arginine-rich spl... 124 6.3e-06 1
UNIPROTKB|F2Z3T5 - symbol:Fusip1 "Protein Fusip1" species... 124 6.3e-06 1
RGD|1311067 - symbol:Srsf10 "serine/arginine-rich splicin... 115 6.3e-06 1
UNIPROTKB|E9PM61 - symbol:RBM4B "RNA-binding protein 4B" ... 107 6.6e-06 1
RGD|1306891 - symbol:Rbm4 "RNA binding motif protein 4" s... 107 6.6e-06 1
ZFIN|ZDB-GENE-030131-7336 - symbol:srsf5a "serine/arginin... 109 6.6e-06 2
UNIPROTKB|F1PTE0 - symbol:SRSF6 "Uncharacterized protein"... 115 6.9e-06 2
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 129 7.7e-06 1
UNIPROTKB|J9PA38 - symbol:SRSF6 "Uncharacterized protein"... 106 8.7e-06 1
UNIPROTKB|G4MSA5 - symbol:MGG_04482 "Uncharacterized prot... 120 8.8e-06 1
TAIR|locus:2195346 - symbol:SR30 "Serine/Arginine-Rich Pr... 123 9.1e-06 1
UNIPROTKB|G3MWK4 - symbol:SRSF12 "Uncharacterized protein... 99 9.6e-06 2
TAIR|locus:2114643 - symbol:SR34a "Serine/Arginine-Rich P... 88 1.1e-05 2
UNIPROTKB|Q7ZTJ8 - symbol:srsf10 "MGC53149 protein" speci... 122 1.1e-05 1
WARNING: Descriptions of 172 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2079502 [details] [associations]
symbol:RS31 "arginine/serine-rich splicing factor 31"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IDA;RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0005681 "spliceosomal complex" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
EMBL:AL138642 HOGENOM:HOG000276234 KO:K12893 EMBL:X99435
EMBL:AF439831 EMBL:AY125565 IPI:IPI00530595 PIR:T47978 PIR:T51304
RefSeq:NP_567120.1 UniGene:At.24231 ProteinModelPortal:P92964
SMR:P92964 IntAct:P92964 STRING:P92964 PaxDb:P92964 PRIDE:P92964
EnsemblPlants:AT3G61860.1 GeneID:825359 KEGG:ath:AT3G61860
TAIR:At3g61860 eggNOG:NOG277933 InParanoid:P92964 OMA:FEYETRQ
PhylomeDB:P92964 ProtClustDB:CLSN2917489 Genevestigator:P92964
GermOnline:AT3G61860 Uniprot:P92964
Length = 264
Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
Identities = 142/224 (63%), Positives = 166/224 (74%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
+G+AFVYFED+RDA DAIR LDN PFGY++RRLSVEWA+GERGR R +K+ +N +PTKT
Sbjct: 35 SGYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKT 94
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFVINFDPIRT+E DI++HFEPYG V +VRIRRNF+FVQFETQE+ATKALE+T RSK++D
Sbjct: 95 LFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILD 154
Query: 128 RVISVEYALKDDSERDDRYD--SPRRG---GYGRHXXXXXXXXXXXXXXX--XXDYGRGR 180
RV+SVEYALKDD ERDDR SPRR Y R DYGR R
Sbjct: 155 RVVSVEYALKDDDERDDRNGGRSPRRSLSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRAR 214
Query: 181 SPAYDRYNGPV-YDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 223
SP YDRY GP Y++RRSPD+GR S Y R+RSP Y R RS
Sbjct: 215 SPEYDRYKGPAAYERRRSPDYGRRSSD---YGRQRSPGYDRYRS 255
Score = 118 (46.6 bits), Expect = 6.1e-13, Sum P(2) = 6.1e-13
Identities = 28/52 (53%), Positives = 31/52 (59%)
Query: 175 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNF 226
D GRSP R PVY +R SPD+GR P P RR SPDYGR RSP +
Sbjct: 171 DRNGGRSPR--RSLSPVYRRRPSPDYGRR--PSPGQGRRPSPDYGRARSPEY 218
Score = 109 (43.4 bits), Expect = 9.8e-12, Sum P(2) = 9.8e-12
Identities = 26/53 (49%), Positives = 31/53 (58%)
Query: 176 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPD-YGRNRSPNFG 227
Y R SP Y R P +R SPD+GR RSP YDR + P Y R RSP++G
Sbjct: 186 YRRRPSPDYGRRPSPGQGRRPSPDYGRARSPE--YDRYKGPAAYERRRSPDYG 236
Score = 107 (42.7 bits), Expect = 6.1e-13, Sum P(2) = 6.1e-13
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
+ +FV NF+ TR+ D++R F+ YG V V ++ +AFV FE + +A A+ D
Sbjct: 2 RPVFVGNFE-YETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPF 60
Query: 126 --VDRVISVEYA 135
R +SVE+A
Sbjct: 61 GYEKRRLSVEWA 72
Score = 104 (41.7 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 26/52 (50%), Positives = 29/52 (55%)
Query: 175 DYGRGRSPAYDRYNGPV-YDQRRSPDHGRH-----------------RSPVP 208
DYGR RSP YDRY GP Y++RRSPD+GR RSPVP
Sbjct: 209 DYGRARSPEYDRYKGPAAYERRRSPDYGRRSSDYGRQRSPGYDRYRSRSPVP 260
Score = 83 (34.3 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 20/37 (54%), Positives = 22/37 (59%)
Query: 193 DQRRSPDHGR--HRSPVPVYDRRRSPDYGRNRSPNFG 227
D+R + GR RS PVY RR SPDYGR SP G
Sbjct: 167 DERDDRNGGRSPRRSLSPVYRRRPSPDYGRRPSPGQG 203
>TAIR|locus:2039975 [details] [associations]
symbol:RS31a "arginine/serine-rich splicing factor 31a"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC006418 UniGene:At.13832 UniGene:At.28553
HSSP:P52298 HOGENOM:HOG000276234 KO:K12893 EMBL:AY065237
EMBL:BT000995 EMBL:AK317202 IPI:IPI00520334 PIR:A84905
RefSeq:NP_182184.1 ProteinModelPortal:Q9ZPX8 SMR:Q9ZPX8
IntAct:Q9ZPX8 PaxDb:Q9ZPX8 PRIDE:Q9ZPX8 EnsemblPlants:AT2G46610.1
GeneID:819273 KEGG:ath:AT2G46610 TAIR:At2g46610 eggNOG:NOG254972
InParanoid:Q9ZPX8 OMA:TRERDME PhylomeDB:Q9ZPX8
ProtClustDB:CLSN2683469 ArrayExpress:Q9ZPX8 Genevestigator:Q9ZPX8
Uniprot:Q9ZPX8
Length = 250
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 135/221 (61%), Positives = 161/221 (72%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR---GERGRHRDGSKSMANQRP 64
+G+AFVYFED+RDA DAIR DN FGY RR+LSVEWA+ GERG+ RDG K+++NQRP
Sbjct: 35 SGYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAKDFQGERGKPRDG-KAVSNQRP 93
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
TKTLFVINFDPIRTRERD++RHFEPYG VL+VR+RRNFAFVQF TQE+ATKAL+ST SK
Sbjct: 94 TKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSK 153
Query: 125 LVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAY 184
L+D+V+SVEYAL++ ER+DRY RR DY R RSP Y
Sbjct: 154 LLDKVVSVEYALREAGEREDRYAGSRR---------RRSPSPVYRRRPSPDYTRRRSPEY 204
Query: 185 DRYNGPV-YDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 224
DRY GP Y++R+SPD+GR S R RSP Y R+RSP
Sbjct: 205 DRYKGPAPYERRKSPDYGRRSSDYG-RARARSPGYDRSRSP 244
Score = 119 (46.9 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 178 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRN---------RSPNF 226
R SP Y R P Y +RRSP++ R++ P P Y+RR+SPDYGR RSP +
Sbjct: 182 RSPSPVYRRRPSPDYTRRRSPEYDRYKGPAP-YERRKSPDYGRRSSDYGRARARSPGY 238
Score = 110 (43.8 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV- 126
++V NFD TR D++R F +G V V ++ +AFV FE + +A A+ TD +
Sbjct: 4 VYVGNFD-YDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTFGY 62
Query: 127 -DRVISVEYALKDDSER 142
R +SVE+A ER
Sbjct: 63 GRRKLSVEWAKDFQGER 79
Score = 89 (36.4 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 17/25 (68%), Positives = 18/25 (72%)
Query: 202 RHRSPVPVYDRRRSPDYGRNRSPNF 226
R RSP PVY RR SPDY R RSP +
Sbjct: 180 RRRSPSPVYRRRPSPDYTRRRSPEY 204
Score = 56 (24.8 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 175 DYGRGR--SPAYDRYNGPVYDQR 195
DYGR R SP YDR P+ R
Sbjct: 227 DYGRARARSPGYDRSRSPIQRAR 249
>TAIR|locus:2131864 [details] [associations]
symbol:RS40 "arginine/serine-rich splicing factor 40"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS;RCA] [GO:0005681
"spliceosomal complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 EMBL:AL022197 GO:GO:0003723
GO:GO:0000398 HOGENOM:HOG000276234 KO:K12893 EMBL:X99437
EMBL:U76607 IPI:IPI00520315 PIR:T05797 RefSeq:NP_001190837.1
RefSeq:NP_194280.1 UniGene:At.10187 ProteinModelPortal:P92965
SMR:P92965 IntAct:P92965 STRING:P92965 PaxDb:P92965 PRIDE:P92965
EnsemblPlants:AT4G25500.1 EnsemblPlants:AT4G25500.4 GeneID:828654
KEGG:ath:AT4G25500 TAIR:At4g25500 eggNOG:NOG298768
InParanoid:P92965 OMA:KRERMSP PhylomeDB:P92965
ProtClustDB:CLSN2685694 Genevestigator:P92965 Uniprot:P92965
Length = 350
Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
Identities = 116/223 (52%), Positives = 145/223 (65%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG---RHRDGSK-SMANQR 63
AGFAFVY ED+RDA DAIR LD FG RRL VEW + ERG R GS+ S ++ R
Sbjct: 35 AGFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMR 94
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRS 123
P+KTLFVINFD TR RD+++HFEPYG +++VRIRRNFAF+Q+E QE+AT+AL++++ S
Sbjct: 95 PSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNS 154
Query: 124 KLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPA 183
KL+D+VISVEYA+KDD R + + SP R DYGRG SP
Sbjct: 155 KLMDKVISVEYAVKDDDARGNGH-SPERRRDRSPERRRRSPSPYKRERGSPDYGRGASPV 213
Query: 184 YDRYNGPVYDQRRSPDHGRHRSPVPVYDRRR-SPDYGRNRSPN 225
Y +R SPD+GR RSP P RR SP+YGR+R N
Sbjct: 214 A-AYR----KERTSPDYGRRRSPSPYKKSRRGSPEYGRDRRGN 251
>TAIR|locus:2173088 [details] [associations]
symbol:RS41 "arginine/serine-rich splicing factor 41"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008380 "RNA splicing" evidence=NAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS;RCA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=RCA] [GO:0005681 "spliceosomal complex" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 GO:GO:0000398 KO:K12893 IPI:IPI00527125
RefSeq:NP_200017.2 UniGene:At.22278 ProteinModelPortal:F4KES0
SMR:F4KES0 PRIDE:F4KES0 EnsemblPlants:AT5G52040.2 GeneID:835279
KEGG:ath:AT5G52040 OMA:PYEKRRE Uniprot:F4KES0
Length = 357
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 114/219 (52%), Positives = 141/219 (64%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG-RHRDGS--KSMANQRP 64
AGFAFVY ED+RDA DAIR LD +G RRL VEW + +RG R G +S + RP
Sbjct: 35 AGFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRP 94
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
+KTLFVINFD TR RD++RHFEPYG +++VRIRRNFAF+Q+E QE+AT+AL++T+ SK
Sbjct: 95 SKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSK 154
Query: 125 LVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSP-A 183
L+D+VISVEYA+KDD R + Y SP R DYGRG SP A
Sbjct: 155 LMDKVISVEYAVKDDDSRGNGY-SPERRRDRSPDRRRRSPSPYRRERGSPDYGRGASPVA 213
Query: 184 YDRYNGPVYDQRRSPDHGR-HRSPVPVYDRRRSPDYGRN 221
+ R +R SPD+GR RSP P R SPDY R+
Sbjct: 214 HKR-------ERTSPDYGRGRRSPSPYKRARLSPDYKRD 245
Score = 107 (42.7 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 31/92 (33%), Positives = 45/92 (48%)
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
K +F NF+ RE D++R F YG V V ++ FAFV E + +A A+ + DR +
Sbjct: 2 KPVFCGNFE-YDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60
Query: 126 --VDRVISVEYALKDDSERDDRYDSPRRGGYG 155
R + VE+ K+D R RR G
Sbjct: 61 GRTGRRLRVEWT-KNDRGGAGRSGGSRRSSSG 91
Score = 97 (39.2 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 25/50 (50%), Positives = 29/50 (58%)
Query: 178 RGRSPAYDRYN-GPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNR-SPN 225
R RSP R + P +R SPD+GR SPV R SPDYGR R SP+
Sbjct: 182 RDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGRRSPS 231
Score = 64 (27.6 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 27/57 (47%), Positives = 29/57 (50%)
Query: 175 DYGRGR-SPA-YDRYN-GPVY--DQRRSPDHGRHRSPVPVYDRRRSPDYGR--NRSP 224
DYGRGR SP+ Y R P Y D RR R SP R RSP GR +RSP
Sbjct: 222 DYGRGRRSPSPYKRARLSPDYKRDDRRRE---RVASPENGAVRNRSPRKGRGESRSP 275
Score = 56 (24.8 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 177 GRGRS---PAYDRY----NGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS-PNFG 227
GRG S P Y++ + P Y++RR RSP P Y++RR R++S P G
Sbjct: 268 GRGESRSPPPYEKRRESRSPPPYEKRRES-----RSPPP-YEKRRERSRSRSKSSPENG 320
Score = 53 (23.7 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 18/40 (45%), Positives = 20/40 (50%)
Query: 188 NGPVYDQRRSPDHGR--HRSPVPVYDRRRS---PDYGRNR 222
NG V + RSP GR RSP P RR S P Y + R
Sbjct: 257 NGAV--RNRSPRKGRGESRSPPPYEKRRESRSPPPYEKRR 294
>DICTYBASE|DDB_G0275409 [details] [associations]
symbol:DDB_G0275409 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0275409 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000013
RefSeq:XP_001134599.1 ProteinModelPortal:Q1ZXL1
EnsemblProtists:DDB0233346 GeneID:8619946 KEGG:ddi:DDB_G0275409
eggNOG:NOG288151 InParanoid:Q1ZXL1 OMA:DIKNGYA Uniprot:Q1ZXL1
Length = 737
Score = 173 (66.0 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 44/143 (30%), Positives = 81/143 (56%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+AFV + D ++ L F + L+V+ A+ E + ++ S+ + +P++ +
Sbjct: 175 GYAFVIVSTN-DPDIVVKELHRKEFL--NKSLTVQIAKSE-SKKKEESEEV---KPSRAI 227
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
F++N++ +T DI PYGNV V++ +NF FV+FET ++A+KAL++ D
Sbjct: 228 FIVNYNVSKTTTNDIADWCSPYGNVNRVQMVKNFCFVEFETIDQASKALKALDLKSFDGH 287
Query: 129 VISVEY---ALKDDSERDDRYDS 148
++VEY ++ D+ + DRY S
Sbjct: 288 SLTVEYVNGSIDRDNYQRDRYGS 310
Score = 151 (58.2 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 41/142 (28%), Positives = 68/142 (47%)
Query: 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDR 122
+P++ +F++N++ +T DI PYGNV V++ +NF FV+FET ++A+KAL++ D
Sbjct: 222 KPSRAIFIVNYNVSKTTTNDIADWCSPYGNVNRVQMVKNFCFVEFETIDQASKALKALDL 281
Query: 123 SKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSP 182
++VEY + +RD+ Y R YG + + + R
Sbjct: 282 KSFDGHSLTVEY-VNGSIDRDN-YQRDR---YGSNHFNHNLYHNHHFNYHHHSHQQYR-- 334
Query: 183 AYDRYNGPVYDQRRSPDHGRHR 204
D YN R P H H+
Sbjct: 335 --DNYNN-----HRHPHHHNHQ 349
Score = 48 (22.0 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 193 DQRRSPDH--GRHRSPVPVYDRRRSPDYGRNRSPN 225
D++RS H GR RS DRR + +Y N + N
Sbjct: 623 DKKRSRSHSRGRSRSRSHSGDRRNN-NYNNNNTNN 656
>UNIPROTKB|F1NPM7 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000398 GeneTree:ENSGT00700000104309
OMA:DRYEEYD EMBL:AADN02000941 EMBL:AADN02000942 IPI:IPI00590713
Ensembl:ENSGALT00000017877 Uniprot:F1NPM7
Length = 277
Score = 165 (63.1 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 64/199 (32%), Positives = 82/199 (41%)
Query: 35 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 94
Y RRR R RH GS+ AN P L V + T ERD++ F YG +
Sbjct: 93 YRRRRSRSHSPMSNRRRHT-GSR--ANPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLT 148
Query: 95 HVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY 146
V + R FAFV FE +++ +A+E + +L R I V+Y++ R
Sbjct: 149 GVNVVYDQRTGRSRGFAFVYFERIDDSKEAMEHANGMELDGRRIRVDYSITK------RA 202
Query: 147 DSPRRGGY-GRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRS 205
+P G Y GR Y RG YDRY YD R R RS
Sbjct: 203 HTPTPGIYMGRPTHSGGGGGGGAGRRRDSYYDRGYDRGYDRYEE--YDYRY-----RRRS 255
Query: 206 PVPVYDRRRSPDYGRNRSP 224
P P Y R RS R+ SP
Sbjct: 256 PSPYYSRYRSRSRSRSYSP 274
>MGI|MGI:1933972 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933972 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000276232
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 ChiTaRS:TRA2A EMBL:BC057448
IPI:IPI01008014 UniGene:Mm.196598 ProteinModelPortal:Q6PFR5
SMR:Q6PFR5 IntAct:Q6PFR5 STRING:Q6PFR5 PhosphoSite:Q6PFR5
PaxDb:Q6PFR5 PRIDE:Q6PFR5 UCSC:uc009bwm.1 InParanoid:Q6PFR5
CleanEx:MM_TRA2A Genevestigator:Q6PFR5
GermOnline:ENSMUSG00000029817 Uniprot:Q6PFR5
Length = 281
Score = 162 (62.1 bits), Expect = 9.2e-12, P = 9.2e-12
Identities = 64/201 (31%), Positives = 84/201 (41%)
Query: 35 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 94
Y RRR R RH GS+ AN P L V + T ERD++ F YG +
Sbjct: 89 YRRRRSRSHSPMSNRRRHT-GSR--ANPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLS 144
Query: 95 HVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY 146
V + R FAFV FE +++ +A+E + +L R I V+Y++ R
Sbjct: 145 GVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITK------RA 198
Query: 147 DSPRRGGY-GR--HXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRH 203
+P G Y GR H GR R YDR YD+ D+ R
Sbjct: 199 HTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYEDYDY-RR 257
Query: 204 RSPVPVYDRRRSPDYGRNRSP 224
RSP P Y R RS R+ SP
Sbjct: 258 RSPSPYYSRYRSRSRSRSYSP 278
>ZFIN|ZDB-GENE-040426-1415 [details] [associations]
symbol:zgc:65772 "zgc:65772" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1415 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
KO:K12900 EMBL:FP017231 EMBL:BC056275 EMBL:BC066442 IPI:IPI00934956
RefSeq:NP_956827.1 UniGene:Dr.84143 Ensembl:ENSDART00000101091
GeneID:393505 KEGG:dre:393505 InParanoid:Q7SZS0 NextBio:20814531
Uniprot:Q7SZS0
Length = 248
Score = 157 (60.3 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 52/179 (29%), Positives = 78/179 (43%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N +R D++R F YG ++ V I R FA++QFE +A
Sbjct: 8 PNSSLFVRNISD-ESRPEDLRREFGRYGPIVDVYIPLDFYSRRPRGFAYIQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXD 175
AL + DR + R I +++A + D + + + R R D
Sbjct: 67 ALHNLDRKWVCGRQIEIQFA-QGDRKTPGQMKNKERSS-PRSSRYEDSDRRRRSRSRSYD 124
Query: 176 YGRGRSPAYDRY----NGPVYDQ-----RRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 225
R RSP+YDR + P + RRS +H RHR + R R+ R+RSP+
Sbjct: 125 RRRSRSPSYDRRRRRSDSPRESRGRTHSRRSREHDRHRGSTRDHHRSRTDAASRSRSPS 183
>ZFIN|ZDB-GENE-040426-1467 [details] [associations]
symbol:srsf1b "serine/arginine-rich splicing
factor 1b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1467 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
EMBL:AL929224 EMBL:CU928208 IPI:IPI00506820
Ensembl:ENSDART00000110646 ArrayExpress:F1QXQ1 Bgee:F1QXQ1
Uniprot:F1QXQ1
Length = 258
Score = 156 (60.0 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 60/209 (28%), Positives = 81/209 (38%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGS----------KSM 59
FAFV FED RDA DA+ G D + YD RL VE+ R RG R G +
Sbjct: 55 FAFVEFEDPRDAEDAVYGRDG--YDYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYG 112
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALE 118
R ++ +++ P +D+K H G+V + + R+ V+F +E+ T A+
Sbjct: 113 PPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVR 172
Query: 119 STDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGR 178
D +K Y + D PR YGR Y
Sbjct: 173 KLDNTKFRSHEGETAYIRV-------KVDGPRSPSYGRSRSRSRSRSRSRSNSRSRSYSP 225
Query: 179 GRSPAYDRYNGPVYDQRRSPDHGRHRSPV 207
RS RY SP H R RSPV
Sbjct: 226 RRSRGSPRY---------SPRHSRSRSPV 245
>UNIPROTKB|Q06AA6 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:CU928731 EMBL:DQ972958 RefSeq:NP_001070691.1 UniGene:Ssc.14084
SMR:Q06AA6 Ensembl:ENSSSCT00000016762 GeneID:768110 KEGG:ssc:768110
Uniprot:Q06AA6
Length = 279
Score = 157 (60.3 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 63/199 (31%), Positives = 83/199 (41%)
Query: 35 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 94
Y RRR R RH GS+ AN P L V + T ERD++ F YG +
Sbjct: 91 YRRRRSRSHSPMSNRRRHT-GSR--ANPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLS 146
Query: 95 HVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY 146
V + R FAFV FE +++ +A+E + +L R I V+Y++ R
Sbjct: 147 GVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITK------RA 200
Query: 147 DSPRRGGY-GRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRS 205
+P G Y GR GR R YDR YD+ D+ R RS
Sbjct: 201 HTPTPGIYMGRPTHSGGGGGGGGGGGGGG--GRRRDSYYDRGYDRGYDRYEDYDY-RRRS 257
Query: 206 PVPVYDRRRSPDYGRNRSP 224
P P Y R RS R+ SP
Sbjct: 258 PSPYYSRYRSRSRSRSYSP 276
>UNIPROTKB|E1C875 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02000941 EMBL:AADN02000942
IPI:IPI00681985 ProteinModelPortal:E1C875
Ensembl:ENSGALT00000031186 Uniprot:E1C875
Length = 182
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 59/186 (31%), Positives = 79/186 (42%)
Query: 49 RGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RR 100
R RH GS+ AN P L V + T ERD++ F YG + V + R
Sbjct: 4 RRRHT-GSR--ANPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLTGVNVVYDQRTGRSR 59
Query: 101 NFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGY-GRHXX 159
FAFV FE +++ +A+E + +L R I V+Y++ R +P G Y GR
Sbjct: 60 GFAFVYFERIDDSKEAMEHANGMELDGRRIRVDYSITK------RAHTPTPGIYMGRPTH 113
Query: 160 XXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHG-RHRSPVPVYDRRRSPDY 218
GR R YDR YD+ D+ R RSP P Y R RS
Sbjct: 114 FLGGGMGCSGGGGGGGAGRRRDSYYDRGYDRGYDRYEEYDYRYRRRSPSPYYSRYRSRSR 173
Query: 219 GRNRSP 224
R+ SP
Sbjct: 174 SRSYSP 179
>UNIPROTKB|Q13595 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:U53209 EMBL:BC017094
IPI:IPI00013891 IPI:IPI00220447 RefSeq:NP_037425.1
UniGene:Hs.445652 ProteinModelPortal:Q13595 SMR:Q13595
IntAct:Q13595 MINT:MINT-1683046 STRING:Q13595 PhosphoSite:Q13595
DMDM:4033480 PaxDb:Q13595 PRIDE:Q13595 DNASU:29896
Ensembl:ENST00000297071 GeneID:29896 KEGG:hsa:29896 UCSC:uc003swi.3
CTD:29896 GeneCards:GC07M023544 HGNC:HGNC:16645 HPA:HPA054018
MIM:602718 neXtProt:NX_Q13595 PharmGKB:PA164726707
HOVERGEN:HBG102125 InParanoid:Q13595 KO:K12897 OMA:DRYEEYD
OrthoDB:EOG4BVRW2 PhylomeDB:Q13595 ChiTaRS:TRA2A GenomeRNAi:29896
NextBio:52459 ArrayExpress:Q13595 Bgee:Q13595 Genevestigator:Q13595
GermOnline:ENSG00000164548 Uniprot:Q13595
Length = 282
Score = 156 (60.0 bits), Expect = 4.6e-11, P = 4.6e-11
Identities = 61/199 (30%), Positives = 81/199 (40%)
Query: 35 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 94
Y RRR R RH GS+ AN P L V + T ERD++ F YG +
Sbjct: 91 YRRRRSRSHSPMSNRRRHT-GSR--ANPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLS 146
Query: 95 HVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY 146
V + R FAFV FE +++ +A+E + +L R I V+Y++ R
Sbjct: 147 GVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITK------RA 200
Query: 147 DSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHG-RHRS 205
+P G Y GR R YDR YD+ D+ R RS
Sbjct: 201 HTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYEDYDYRYRRRS 260
Query: 206 PVPVYDRRRSPDYGRNRSP 224
P P Y R RS R+ SP
Sbjct: 261 PSPYYSRYRSRSRSRSYSP 279
>UNIPROTKB|E2R4B2 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:DRYEEYD EMBL:AAEX03009371
Ensembl:ENSCAFT00000004456 Uniprot:E2R4B2
Length = 278
Score = 155 (59.6 bits), Expect = 5.6e-11, P = 5.6e-11
Identities = 63/200 (31%), Positives = 83/200 (41%)
Query: 35 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 94
Y RRR R RH GS+ AN P L V + T ERD++ F YG +
Sbjct: 91 YRRRRSRSHSPMSNRRRHT-GSR--ANPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLS 146
Query: 95 HVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY 146
V + R FAFV FE +++ +A+E + +L R I V+Y++ R
Sbjct: 147 GVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITK------RA 200
Query: 147 DSPRRGGY-GRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHG-RHR 204
+P G Y GR GR R YDR YD+ D+ R R
Sbjct: 201 HTPTPGIYMGRPTHSGGGGGGGGGGGGGG--GRRRDSYYDRGYDRGYDRYEDYDYRYRRR 258
Query: 205 SPVPVYDRRRSPDYGRNRSP 224
SP P Y R RS R+ SP
Sbjct: 259 SPSPYYSRYRSRSRSRSYSP 278
>UNIPROTKB|Q2KJ71 [details] [associations]
symbol:TRA2A "Transformer 2 alpha homolog (Drosophila)"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 CTD:29896 HOVERGEN:HBG102125 KO:K12897
OMA:DRYEEYD OrthoDB:EOG4BVRW2 EMBL:DAAA02010222 EMBL:BC105489
IPI:IPI00695902 RefSeq:NP_001039845.1 UniGene:Bt.43563 SMR:Q2KJ71
STRING:Q2KJ71 Ensembl:ENSBTAT00000016756 GeneID:534586
KEGG:bta:534586 InParanoid:Q2KJ71 NextBio:20876456 Uniprot:Q2KJ71
Length = 281
Score = 155 (59.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 63/200 (31%), Positives = 83/200 (41%)
Query: 35 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 94
Y RRR R RH GS+ AN P L V + T ERD++ F YG +
Sbjct: 91 YRRRRSRSHSPMSNRRRHT-GSR--ANPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLS 146
Query: 95 HVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY 146
V + R FAFV FE +++ +A+E + +L R I V+Y++ R
Sbjct: 147 GVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITK------RA 200
Query: 147 DSPRRGGY-GRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHG-RHR 204
+P G Y GR GR R YDR YD+ D+ R R
Sbjct: 201 HTPTPGIYMGRPTHSGGGGGGGGGGGGGG--GRRRDSYYDRGYDRGYDRYEDYDYRYRRR 258
Query: 205 SPVPVYDRRRSPDYGRNRSP 224
SP P Y R RS R+ SP
Sbjct: 259 SPSPYYSRYRSRSRSRSYSP 278
>UNIPROTKB|B4DQI6 [details] [associations]
symbol:TRA2A "cDNA FLJ50614, highly similar to
Transformer-2 protein homolog" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
Uniprot:B4DQI6
Length = 180
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 56/184 (30%), Positives = 76/184 (41%)
Query: 49 RGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RR 100
R RH GS+ AN P L V + T ERD++ F YG + V + R
Sbjct: 4 RRRHT-GSR--ANPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLSGVNVVYDQRTGRSR 59
Query: 101 NFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXX 160
FAFV FE +++ +A+E + +L R I V+Y++ R +P G Y
Sbjct: 60 GFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITK------RAHTPTPGIYMGRPTH 113
Query: 161 XXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGR 220
GR R YDR YD+ D+ RSP P Y R RS R
Sbjct: 114 SGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYEDYDYRYRRSPSPYYSRYRSRSRSR 173
Query: 221 NRSP 224
+ SP
Sbjct: 174 SYSP 177
>RGD|1562563 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0042802 "identical protein binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562563 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 EMBL:BC161978 IPI:IPI00201580
UniGene:Rn.203363 SMR:B1WC25 STRING:B1WC25
Ensembl:ENSRNOT00000012325 UCSC:RGD:1562563 Genevestigator:B1WC25
Uniprot:B1WC25
Length = 282
Score = 154 (59.3 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 64/202 (31%), Positives = 84/202 (41%)
Query: 35 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 94
Y RRR R RH GS+ AN P L V + T ERD++ F YG +
Sbjct: 89 YRRRRSRSHSPMSNRRRHT-GSR--ANPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLS 144
Query: 95 HVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY 146
V + R FAFV FE +++ +A+E + +L R I V+Y++ R
Sbjct: 145 GVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITK------RA 198
Query: 147 DSPRRGGY-GR--HXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHG-R 202
+P G Y GR H GR R YDR YD+ D+ R
Sbjct: 199 HTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGG-GRRRDSYYDRGYDRGYDRYEDYDYRYR 257
Query: 203 HRSPVPVYDRRRSPDYGRNRSP 224
RSP P Y R RS R+ SP
Sbjct: 258 RRSPSPYYSRYRSRSRSRSYSP 279
>GENEDB_PFALCIPARUM|PFE0865c [details] [associations]
symbol:PFE0865c "splicing factor, putative"
species:5833 "Plasmodium falciparum" [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0006397 "mRNA processing" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AL844504 HOGENOM:HOG000276234
RefSeq:XP_001351730.2 ProteinModelPortal:Q8I3T5 MINT:MINT-1573808
PRIDE:Q8I3T5 EnsemblProtists:PFE0865c:mRNA GeneID:812988
KEGG:pfa:PFE0865c EuPathDB:PlasmoDB:PF3D7_0517300
ProtClustDB:CLSZ2434547 Uniprot:Q8I3T5
Length = 298
Score = 154 (59.3 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 68/229 (29%), Positives = 100/229 (43%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRH--RDGSKSMANQRPT 65
A FAF+ FED RDAADAI+ D F ++ R+ V + E GR+ R G + M ++ P
Sbjct: 46 AAFAFIEFEDARDAADAIKEKDGCDFEGNKLRVEVPFNARENGRYNARGGGRGMMHRGPK 105
Query: 66 --KTLFVINFD--PIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALE-- 118
+ +V+ PI +D+K H G H + ++ V F +++ +A++
Sbjct: 106 SRRGRYVVEVTGLPISGSWQDLKDHLREAGECGHADVFKDGTGEVSFFNKDDMLEAIDKF 165
Query: 119 --STDRSKLVDRV-ISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXX- 174
S RS ++ IS+ K RDD GGYGR+
Sbjct: 166 NGSIFRSHEGEKSKISIRQK-KTLWRRDD-------GGYGRYNSRHRSYSSRSYSRSGKR 217
Query: 175 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 223
Y R RS +Y + Y + RS R RS DRRR Y + RS
Sbjct: 218 SYTRSRSRSYSSRS---YSRSRSSS-SRSRSRS--MDRRRDT-YDKKRS 259
>UNIPROTKB|Q8I3T5 [details] [associations]
symbol:PFE0865c "Splicing factor, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0006397 "mRNA processing" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AL844504 HOGENOM:HOG000276234
RefSeq:XP_001351730.2 ProteinModelPortal:Q8I3T5 MINT:MINT-1573808
PRIDE:Q8I3T5 EnsemblProtists:PFE0865c:mRNA GeneID:812988
KEGG:pfa:PFE0865c EuPathDB:PlasmoDB:PF3D7_0517300
ProtClustDB:CLSZ2434547 Uniprot:Q8I3T5
Length = 298
Score = 154 (59.3 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 68/229 (29%), Positives = 100/229 (43%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRH--RDGSKSMANQRPT 65
A FAF+ FED RDAADAI+ D F ++ R+ V + E GR+ R G + M ++ P
Sbjct: 46 AAFAFIEFEDARDAADAIKEKDGCDFEGNKLRVEVPFNARENGRYNARGGGRGMMHRGPK 105
Query: 66 --KTLFVINFD--PIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALE-- 118
+ +V+ PI +D+K H G H + ++ V F +++ +A++
Sbjct: 106 SRRGRYVVEVTGLPISGSWQDLKDHLREAGECGHADVFKDGTGEVSFFNKDDMLEAIDKF 165
Query: 119 --STDRSKLVDRV-ISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXX- 174
S RS ++ IS+ K RDD GGYGR+
Sbjct: 166 NGSIFRSHEGEKSKISIRQK-KTLWRRDD-------GGYGRYNSRHRSYSSRSYSRSGKR 217
Query: 175 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 223
Y R RS +Y + Y + RS R RS DRRR Y + RS
Sbjct: 218 SYTRSRSRSYSSRS---YSRSRSSS-SRSRSRS--MDRRRDT-YDKKRS 259
>UNIPROTKB|B4DUA9 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
Length = 181
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 57/185 (30%), Positives = 77/185 (41%)
Query: 49 RGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RR 100
R RH GS+ AN P L V + T ERD++ F YG + V + R
Sbjct: 4 RRRHT-GSR--ANPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLSGVNVVYDQRTGRSR 59
Query: 101 NFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXX 160
FAFV FE +++ +A+E + +L R I V+Y++ R +P G Y
Sbjct: 60 GFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITK------RAHTPTPGIYMGRPTH 113
Query: 161 XXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHG-RHRSPVPVYDRRRSPDYG 219
GR R YDR YD+ D+ R RSP P Y R RS
Sbjct: 114 SGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRS 173
Query: 220 RNRSP 224
R+ SP
Sbjct: 174 RSYSP 178
>ZFIN|ZDB-GENE-040426-1391 [details] [associations]
symbol:tra2a "transformer-2 alpha" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1391 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P52298 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:BX469899 EMBL:BC054632 IPI:IPI00510581 RefSeq:NP_956710.1
UniGene:Dr.75585 SMR:Q7T2A0 STRING:Q7T2A0
Ensembl:ENSDART00000008595 GeneID:393388 KEGG:dre:393388
InParanoid:Q7T2A0 NextBio:20814435 Uniprot:Q7T2A0
Length = 297
Score = 152 (58.6 bits), Expect = 6.2e-10, P = 6.2e-10
Identities = 61/191 (31%), Positives = 82/191 (42%)
Query: 48 ERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------R 99
++ H G + AN P L V + T ERD++ F YG++ V +
Sbjct: 118 KKDSHNQGD-ARANPDPNTCLGVFGLS-LYTTERDLREVFSRYGSLAGVNVVYDQRTGRS 175
Query: 100 RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGY-GR-- 156
R FAFV FE ++A +A+E + +L R I V+Y++ R +P G Y GR
Sbjct: 176 RGFAFVYFEHIDDAKEAMERANGMELDGRRIRVDYSITK------RPHTPTPGIYMGRPT 229
Query: 157 HXXXXXXXXXXXXXXXXXD--YGRGRSPAYDR-YNGPVYDQRRSPDHGRHRSPVPVYDRR 213
H D Y RG YDR Y+ YD R S R RSP P Y R
Sbjct: 230 HNGGGGGGGGSSSGGRRRDSYYDRGYDRGYDRGYDE--YDYRYS----RRRSPSPYYSRY 283
Query: 214 RSPDYGRNRSP 224
RS R+ SP
Sbjct: 284 RSRSRSRSYSP 294
>UNIPROTKB|E2RJL3 [details] [associations]
symbol:SRSF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 OMA:QVMEDLD EMBL:AAEX03006566
ProteinModelPortal:E2RJL3 PRIDE:E2RJL3 Ensembl:ENSCAFT00000027630
NextBio:20895281 Uniprot:E2RJL3
Length = 253
Score = 151 (58.2 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 60/209 (28%), Positives = 80/209 (38%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRP----- 64
FAFV FED RDA DA+ G D + YD RL VE+ R RG R G P
Sbjct: 56 FAFVEFEDPRDAEDAVYGRDG--YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYG 113
Query: 65 -----TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALE 118
++ V++ P +D+K H G+V + + R+ V+F +E+ T A+
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVR 173
Query: 119 STDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGR 178
D +K Y + D PR YGR R
Sbjct: 174 KLDNTKFRSHEGETAYIRV-------KVDGPRSPSYGRSRSRSRSRSRSRSRSNSRS--R 224
Query: 179 GRSPAYDRYNGPVYDQRRSPDHGRHRSPV 207
SP R P Y SP H R RS +
Sbjct: 225 SYSPRRSR-GSPRY----SPRHSRSRSHI 248
>UNIPROTKB|J3KTL2 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471109 UniGene:Hs.68714 HGNC:HGNC:10780 ChiTaRS:SRSF1
EMBL:AC015813 ProteinModelPortal:J3KTL2 Ensembl:ENST00000584773
Uniprot:J3KTL2
Length = 253
Score = 151 (58.2 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 60/209 (28%), Positives = 80/209 (38%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRP----- 64
FAFV FED RDA DA+ G D + YD RL VE+ R RG R G P
Sbjct: 56 FAFVEFEDPRDAEDAVYGRDG--YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYG 113
Query: 65 -----TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALE 118
++ V++ P +D+K H G+V + + R+ V+F +E+ T A+
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVR 173
Query: 119 STDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGR 178
D +K Y + D PR YGR R
Sbjct: 174 KLDNTKFRSHEGETAYIRV-------KVDGPRSPSYGRSRSRSRSRSRSRSRSNSRS--R 224
Query: 179 GRSPAYDRYNGPVYDQRRSPDHGRHRSPV 207
SP R P Y SP H R RS +
Sbjct: 225 SYSPRRSR-GSPRY----SPRHSRSRSHI 248
>UNIPROTKB|Q0VCY7 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9913 "Bos taurus" [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0003723
"RNA binding" evidence=ISS] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0060048 "cardiac
muscle contraction" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0000395 GeneTree:ENSGT00700000104103
KO:K12890 OrthoDB:EOG4WH8N5 EMBL:BC119930 IPI:IPI00692211
RefSeq:NP_001069862.1 UniGene:Bt.864 ProteinModelPortal:Q0VCY7
SMR:Q0VCY7 STRING:Q0VCY7 PRIDE:Q0VCY7 Ensembl:ENSBTAT00000049486
GeneID:615796 KEGG:bta:615796 CTD:6426 InParanoid:Q0VCY7
OMA:QVMEDLD NextBio:20899791 Uniprot:Q0VCY7
Length = 248
Score = 150 (57.9 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 60/207 (28%), Positives = 79/207 (38%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRP----- 64
FAFV FED RDA DA+ G D + YD RL VE+ R RG R G P
Sbjct: 56 FAFVEFEDPRDAEDAVYGRDG--YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYG 113
Query: 65 -----TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALE 118
++ V++ P +D+K H G+V + + R+ V+F +E+ T A+
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVR 173
Query: 119 STDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGR 178
D +K Y + D PR YGR R
Sbjct: 174 KLDNTKFRSHEGETAYIRV-------KVDGPRSPSYGRSRSRSRSRSRSRSRSNSRS--R 224
Query: 179 GRSPAYDRYNGPVYDQRRSPDHGRHRS 205
SP R P Y SP H R RS
Sbjct: 225 SYSPRRSR-GSPRY----SPRHSRSRS 246
>UNIPROTKB|Q07955 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0050733 "RS domain binding" evidence=IEA]
[GO:0060048 "cardiac muscle contraction" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA;TAS]
[GO:0000395 "mRNA 5'-splice site recognition" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA;IPI] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 GO:GO:0016607 GO:GO:0001701
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471109
GO:GO:0060048 GO:GO:0006406 GO:GO:0071013 Reactome:REACT_1788
eggNOG:COG0724 GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78
HOVERGEN:HBG002295 GO:GO:0000395 KO:K12890 PDB:3BEG PDBsum:3BEG
CTD:6426 OMA:QVMEDLD EMBL:M72709 EMBL:M69040 EMBL:AB062124
EMBL:AK312781 EMBL:BC010264 EMBL:BC033785 IPI:IPI00215884
IPI:IPI00218591 IPI:IPI00218592 PIR:A40040 PIR:B40040 PIR:C40040
RefSeq:NP_001071634.1 RefSeq:NP_008855.1 UniGene:Hs.68714 PDB:1X4A
PDB:2O3D PDBsum:1X4A PDBsum:2O3D ProteinModelPortal:Q07955
SMR:Q07955 DIP:DIP-2155N IntAct:Q07955 MINT:MINT-5000565
STRING:Q07955 PhosphoSite:Q07955 DMDM:730773 PaxDb:Q07955
PeptideAtlas:Q07955 PRIDE:Q07955 DNASU:6426 Ensembl:ENST00000258962
Ensembl:ENST00000581979 Ensembl:ENST00000582730 GeneID:6426
KEGG:hsa:6426 UCSC:uc002ivi.3 UCSC:uc002ivj.3 GeneCards:GC17M056079
H-InvDB:HIX0173551 HGNC:HGNC:10780 HPA:CAB013073 MIM:600812
neXtProt:NX_Q07955 PharmGKB:PA35696 InParanoid:Q07955
PhylomeDB:Q07955 ChiTaRS:SRSF1 EvolutionaryTrace:Q07955
GenomeRNAi:6426 NextBio:24955 PMAP-CutDB:Q07955 Bgee:Q07955
CleanEx:HS_SFRS1 Genevestigator:Q07955 GermOnline:ENSG00000136450
Uniprot:Q07955
Length = 248
Score = 150 (57.9 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 60/207 (28%), Positives = 79/207 (38%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRP----- 64
FAFV FED RDA DA+ G D + YD RL VE+ R RG R G P
Sbjct: 56 FAFVEFEDPRDAEDAVYGRDG--YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYG 113
Query: 65 -----TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALE 118
++ V++ P +D+K H G+V + + R+ V+F +E+ T A+
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVR 173
Query: 119 STDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGR 178
D +K Y + D PR YGR R
Sbjct: 174 KLDNTKFRSHEGETAYIRV-------KVDGPRSPSYGRSRSRSRSRSRSRSRSNSRS--R 224
Query: 179 GRSPAYDRYNGPVYDQRRSPDHGRHRS 205
SP R P Y SP H R RS
Sbjct: 225 SYSPRRSR-GSPRY----SPRHSRSRS 246
>UNIPROTKB|Q3YLA6 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9823 "Sus scrofa" [GO:0005654 "nucleoplasm" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000395 "mRNA 5'-splice
site recognition" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0060048 "cardiac
muscle contraction" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
GO:GO:0000395 GeneTree:ENSGT00700000104103 KO:K12890
OrthoDB:EOG4WH8N5 CTD:6426 OMA:QVMEDLD EMBL:DQ098951 EMBL:DQ098950
RefSeq:NP_001033096.1 UniGene:Ssc.7576 HSSP:Q07955
ProteinModelPortal:Q3YLA6 SMR:Q3YLA6 STRING:Q3YLA6 PRIDE:Q3YLA6
Ensembl:ENSSSCT00000019188 GeneID:654327 KEGG:ssc:654327
Uniprot:Q3YLA6
Length = 248
Score = 150 (57.9 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 60/207 (28%), Positives = 79/207 (38%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRP----- 64
FAFV FED RDA DA+ G D + YD RL VE+ R RG R G P
Sbjct: 56 FAFVEFEDPRDAEDAVYGRDG--YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYG 113
Query: 65 -----TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALE 118
++ V++ P +D+K H G+V + + R+ V+F +E+ T A+
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVR 173
Query: 119 STDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGR 178
D +K Y + D PR YGR R
Sbjct: 174 KLDNTKFRSHEGETAYIRV-------KVDGPRSPSYGRSRSRSRSRSRSRSRSNSRS--R 224
Query: 179 GRSPAYDRYNGPVYDQRRSPDHGRHRS 205
SP R P Y SP H R RS
Sbjct: 225 SYSPRRSR-GSPRY----SPRHSRSRS 246
>MGI|MGI:98283 [details] [associations]
symbol:Srsf1 "serine/arginine-rich splicing factor 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IGI;IDA] [GO:0016607 "nuclear
speck" evidence=ISO;IDA] [GO:0050733 "RS domain binding"
evidence=IPI] [GO:0060048 "cardiac muscle contraction"
evidence=IGI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:98283 GO:GO:0005737
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724
EMBL:AL593853 HOVERGEN:HBG002295 GO:GO:0000395
GeneTree:ENSGT00700000104103 KO:K12890 CTD:6426 EMBL:AK018176
EMBL:AK078715 EMBL:AK150535 EMBL:CU406964 EMBL:BC046773
EMBL:BC058627 IPI:IPI00420807 IPI:IPI00457656 IPI:IPI00515505
PIR:S26404 RefSeq:NP_001071635.1 RefSeq:NP_775550.2
UniGene:Mm.391719 UniGene:Mm.478968 PDB:1X4C PDBsum:1X4C
ProteinModelPortal:Q6PDM2 SMR:Q6PDM2 DIP:DIP-48723N IntAct:Q6PDM2
STRING:Q6PDM2 PhosphoSite:Q6PDM2 PaxDb:Q6PDM2 PRIDE:Q6PDM2
Ensembl:ENSMUST00000079866 Ensembl:ENSMUST00000139129 GeneID:110809
KEGG:mmu:110809 UCSC:uc007kvc.1 UCSC:uc007kvd.1 InParanoid:B2KGJ5
EvolutionaryTrace:Q6PDM2 NextBio:364697 Bgee:Q6PDM2
CleanEx:MM_SFRS1 Genevestigator:Q6PDM2
GermOnline:ENSMUSG00000018379 Uniprot:Q6PDM2
Length = 248
Score = 150 (57.9 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 60/207 (28%), Positives = 79/207 (38%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRP----- 64
FAFV FED RDA DA+ G D + YD RL VE+ R RG R G P
Sbjct: 56 FAFVEFEDPRDAEDAVYGRDG--YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYG 113
Query: 65 -----TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALE 118
++ V++ P +D+K H G+V + + R+ V+F +E+ T A+
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVR 173
Query: 119 STDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGR 178
D +K Y + D PR YGR R
Sbjct: 174 KLDNTKFRSHEGETAYIRV-------KVDGPRSPSYGRSRSRSRSRSRSRSRSNSRS--R 224
Query: 179 GRSPAYDRYNGPVYDQRRSPDHGRHRS 205
SP R P Y SP H R RS
Sbjct: 225 SYSPRRSR-GSPRY----SPRHSRSRS 246
>RGD|1587490 [details] [associations]
symbol:Srsf1 "serine/arginine-rich splicing factor 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=IEA;ISO] [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0016607
"nuclear speck" evidence=IEA;ISO] [GO:0050733 "RS domain binding"
evidence=IEA;ISO] [GO:0060048 "cardiac muscle contraction"
evidence=IEA;ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1587490
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 EMBL:CH473948 GO:GO:0071013
GO:GO:0000395 KO:K12890 OrthoDB:EOG4WH8N5 CTD:6426 IPI:IPI00780927
RefSeq:NP_001103022.1 UniGene:Rn.84878 SMR:D4A9L2
Ensembl:ENSRNOT00000055706 GeneID:689890 KEGG:rno:689890
NextBio:739704 Uniprot:D4A9L2
Length = 248
Score = 150 (57.9 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 60/207 (28%), Positives = 79/207 (38%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRP----- 64
FAFV FED RDA DA+ G D + YD RL VE+ R RG R G P
Sbjct: 56 FAFVEFEDPRDAEDAVYGRDG--YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYG 113
Query: 65 -----TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALE 118
++ V++ P +D+K H G+V + + R+ V+F +E+ T A+
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVR 173
Query: 119 STDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGR 178
D +K Y + D PR YGR R
Sbjct: 174 KLDNTKFRSHEGETAYIRV-------KVDGPRSPSYGRSRSRSRSRSRSRSRSNSRS--R 224
Query: 179 GRSPAYDRYNGPVYDQRRSPDHGRHRS 205
SP R P Y SP H R RS
Sbjct: 225 SYSPRRSR-GSPRY----SPRHSRSRS 246
>UNIPROTKB|Q5R7H2 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9601 "Pongo abelii" [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG002295
GO:GO:0000395 KO:K12890 CTD:6426 EMBL:CR860145
RefSeq:NP_001126337.1 UniGene:Pab.7173 ProteinModelPortal:Q5R7H2
SMR:Q5R7H2 PRIDE:Q5R7H2 GeneID:100173318 KEGG:pon:100173318
InParanoid:Q5R7H2 Uniprot:Q5R7H2
Length = 248
Score = 149 (57.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 60/207 (28%), Positives = 79/207 (38%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRP----- 64
FAFV FED RDA DA+ G D + YD RL VE+ R RG R G P
Sbjct: 56 FAFVEFEDPRDAEDAVYGRDG--YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYG 113
Query: 65 -----TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALE 118
++ V++ P +D+K H G+V + + R+ V+F +E+ T A+
Sbjct: 114 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVR 173
Query: 119 STDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGR 178
D +K Y + D PR YGR R
Sbjct: 174 KLDNTKFRSHEGETAYIRV-------KVDGPRSPSYGRSRSRSRSRSRNRSRSNSRS--R 224
Query: 179 GRSPAYDRYNGPVYDQRRSPDHGRHRS 205
SP R P Y SP H R RS
Sbjct: 225 SYSPRRSR-GSPRY----SPRHSRSRS 246
>UNIPROTKB|Q5ZML3 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295
KO:K12890 CTD:6426 EMBL:AJ719371 IPI:IPI00573494
RefSeq:NP_001107213.1 UniGene:Gga.4490 ProteinModelPortal:Q5ZML3
SMR:Q5ZML3 STRING:Q5ZML3 PRIDE:Q5ZML3 GeneID:772264 KEGG:gga:772264
eggNOG:NOG302520 InParanoid:Q5ZML3 NextBio:20922455 Uniprot:Q5ZML3
Length = 257
Score = 136 (52.9 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 46/153 (30%), Positives = 66/153 (43%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRP----- 64
FAFV FED RDA DA+ G D + YD RL VE+ R RG R G P
Sbjct: 56 FAFVEFEDPRDAEDAVYGRDG--YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYG 113
Query: 65 -----TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALE 118
++ +++ P +D+K H G+V + + R+ V+F +E+ T A+
Sbjct: 114 PPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVR 173
Query: 119 STDRSKLVDRVISVEYA-LKDDSERDDRYDSPR 150
D +K Y +K D R Y R
Sbjct: 174 KLDNTKFRSHEGETAYIRVKVDGPRSPSYGRSR 206
Score = 46 (21.3 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 211 DRRRSPDYGRNRS 223
D RSP YGR+RS
Sbjct: 195 DGPRSPSYGRSRS 207
Score = 39 (18.8 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 193 DQRRSPDHGRHRS 205
D RSP +GR RS
Sbjct: 195 DGPRSPSYGRSRS 207
>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
symbol:srsf2a "serine/arginine-rich splicing
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
Length = 225
Score = 145 (56.1 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 48/162 (29%), Positives = 69/162 (42%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 128
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGALLDGR 83
Query: 129 VISVE---YALKDDSERDDRYDSPRR-GGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAY 184
+ V+ Y D+ R PRR GGYGR R RS +
Sbjct: 84 ELRVQMARYGRPPDAHYSRRGAPPRRYGGYGRRSRSRSPRRRKHSRSRSRSRSRSRSRSR 143
Query: 185 DRYN---GPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 223
RY+ Y + RS R ++ P + +SP R+RS
Sbjct: 144 SRYSRSRSRSYSRSRSRSRSRSKTRTPRRSKSKSPSRSRSRS 185
>WB|WBGene00004701 [details] [associations]
symbol:rsp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0000398
GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 140 (54.3 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 58/170 (34%), Positives = 76/170 (44%)
Query: 77 RTRERDIKRHFEPYGNV--LHV------RIRRNFAFVQFETQEEATKALESTDRSKLVD- 127
+T D++R FE YG++ +H+ R + F FV+F + +A AL+ TD KLVD
Sbjct: 29 QTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTD-GKLVDG 87
Query: 128 RVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRY 187
R + V A K D D+R R GG GR Y R RSP R
Sbjct: 88 RELRVTLA-KYDRPSDER--GGRGGGGGRRRSRSPRRRSRSPR-----YSRSRSPRRSRS 139
Query: 188 ---NGPVYDQRRSPDH-----GRHRSPVPVYD----RRRSPDYGRNRSPN 225
+ P D+R SPD R RSP P D RRS +RSP+
Sbjct: 140 RTRSPPSRDRRDSPDRRDNSRSRSRSPPPREDGSPKERRSRSRSASRSPS 189
>UNIPROTKB|Q09511 [details] [associations]
symbol:rsp-4 "Probable splicing factor,
arginine/serine-rich 4" species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002009 GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010171 GO:GO:0040011 GO:GO:0003723 GO:GO:0042127
GO:GO:0000398 GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 140 (54.3 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 58/170 (34%), Positives = 76/170 (44%)
Query: 77 RTRERDIKRHFEPYGNV--LHV------RIRRNFAFVQFETQEEATKALESTDRSKLVD- 127
+T D++R FE YG++ +H+ R + F FV+F + +A AL+ TD KLVD
Sbjct: 29 QTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTD-GKLVDG 87
Query: 128 RVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRY 187
R + V A K D D+R R GG GR Y R RSP R
Sbjct: 88 RELRVTLA-KYDRPSDER--GGRGGGGGRRRSRSPRRRSRSPR-----YSRSRSPRRSRS 139
Query: 188 ---NGPVYDQRRSPDH-----GRHRSPVPVYD----RRRSPDYGRNRSPN 225
+ P D+R SPD R RSP P D RRS +RSP+
Sbjct: 140 RTRSPPSRDRRDSPDRRDNSRSRSRSPPPREDGSPKERRSRSRSASRSPS 189
>RGD|1359713 [details] [associations]
symbol:Rbm47 "RNA binding motif protein 47" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359713 GO:GO:0005634
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 HOGENOM:HOG000186083 GO:GO:0003723
HSSP:Q9NQ94 CTD:54502 OrthoDB:EOG4THVTH OMA:IGPNREY EMBL:BC081995
IPI:IPI00196127 RefSeq:NP_001005882.1 UniGene:Rn.38803
ProteinModelPortal:Q66H68 SMR:Q66H68 PRIDE:Q66H68
Ensembl:ENSRNOT00000003327 GeneID:305340 KEGG:rno:305340
UCSC:RGD:1359713 InParanoid:Q66H68 NextBio:654387
Genevestigator:Q66H68 Uniprot:Q66H68
Length = 590
Score = 148 (57.2 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 49/149 (32%), Positives = 73/149 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IKR F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNL-MIETTEETIKRSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGGYG 155
+ V A D E+ RY +GG G
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQKAAKGGGG 336
Score = 37 (18.1 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 177 GRGRSPAYDRYNGP 190
GRGR A +R GP
Sbjct: 382 GRGRGAAGNRTPGP 395
>MGI|MGI:2384294 [details] [associations]
symbol:Rbm47 "RNA binding motif protein 47" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:2384294 GO:GO:0005634 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 GO:GO:0003723 HSSP:Q9NQ94 CTD:54502
OrthoDB:EOG4THVTH OMA:IGPNREY EMBL:AK035620 EMBL:AK085733
EMBL:AK142584 EMBL:AK170082 EMBL:BC013481 EMBL:BC034195
EMBL:BC112902 IPI:IPI00128377 IPI:IPI00265759 RefSeq:NP_001120854.1
RefSeq:NP_620704.1 RefSeq:NP_848541.2 UniGene:Mm.36863
UniGene:Mm.400185 UniGene:Mm.426431 ProteinModelPortal:Q91WT8
SMR:Q91WT8 PhosphoSite:Q91WT8 PaxDb:Q91WT8 PRIDE:Q91WT8
Ensembl:ENSMUST00000094756 Ensembl:ENSMUST00000094757
Ensembl:ENSMUST00000113724 Ensembl:ENSMUST00000113726
Ensembl:ENSMUST00000167950 GeneID:245945 KEGG:mmu:245945
UCSC:uc008xok.2 UCSC:uc008xop.2 InParanoid:Q91WT8 NextBio:387022
Bgee:Q91WT8 CleanEx:MM_RBM47 Genevestigator:Q91WT8 Uniprot:Q91WT8
Length = 590
Score = 145 (56.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 48/149 (32%), Positives = 73/149 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNL-MIETTEETIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGGYG 155
+ V A D E+ RY +GG G
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQKAAKGGGG 336
Score = 37 (18.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 177 GRGRSPAYDRYNGP 190
GRGR A +R GP
Sbjct: 382 GRGRGAAGNRTPGP 395
>UNIPROTKB|B7Z8Z7 [details] [associations]
symbol:RBM47 "cDNA FLJ51456, moderately similar to APOBEC1
complementation factor" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 UniGene:Hs.518727 HGNC:HGNC:30358 ChiTaRS:RBM47
EMBL:AK304206 IPI:IPI00964320 SMR:B7Z8Z7 STRING:B7Z8Z7
Ensembl:ENST00000514014 Uniprot:B7Z8Z7
Length = 555
Score = 143 (55.4 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 48/147 (32%), Positives = 72/147 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 157 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 210
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 211 YVRNL-MIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 269
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGG 153
+ V A D E+ RY RGG
Sbjct: 270 GSCLEVTLAKPVDKEQYSRYQKAARGG 296
Score = 37 (18.1 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 177 GRGRSPAYDRYNGP 190
GRGR A +R GP
Sbjct: 342 GRGRGAAGNRAPGP 355
>UNIPROTKB|A0AV96 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003723 CTD:54502
OrthoDB:EOG4THVTH EMBL:AF261889 EMBL:AF262323 EMBL:AK000280
EMBL:AC098869 EMBL:AC112717 EMBL:BC034402 EMBL:BC126261
IPI:IPI00005042 IPI:IPI00169342 RefSeq:NP_001092104.1
RefSeq:NP_061900.2 UniGene:Hs.518727 PDB:2DIS PDBsum:2DIS
ProteinModelPortal:A0AV96 SMR:A0AV96 IntAct:A0AV96 STRING:A0AV96
PhosphoSite:A0AV96 PaxDb:A0AV96 PRIDE:A0AV96 DNASU:54502
Ensembl:ENST00000295971 Ensembl:ENST00000319592
Ensembl:ENST00000381793 Ensembl:ENST00000381795 GeneID:54502
KEGG:hsa:54502 UCSC:uc003gvc.2 UCSC:uc003gvd.2
GeneCards:GC04M040425 HGNC:HGNC:30358 HPA:HPA006347
neXtProt:NX_A0AV96 PharmGKB:PA162400825 InParanoid:A0AV96
OMA:IGPNREY ChiTaRS:RBM47 EvolutionaryTrace:A0AV96 GenomeRNAi:54502
NextBio:56852 ArrayExpress:A0AV96 Bgee:A0AV96 CleanEx:HS_RBM47
Genevestigator:A0AV96 Uniprot:A0AV96
Length = 593
Score = 143 (55.4 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 48/147 (32%), Positives = 72/147 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNL-MIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGG 153
+ V A D E+ RY RGG
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQKAARGG 334
Score = 37 (18.1 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 177 GRGRSPAYDRYNGP 190
GRGR A +R GP
Sbjct: 380 GRGRGAAGNRAPGP 393
>FB|FBgn0040284 [details] [associations]
symbol:SF2 "SF2" species:7227 "Drosophila melanogaster"
[GO:0005515 "protein binding" evidence=IPI] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC;ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0007095 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0071013 eggNOG:COG0724 GO:GO:0006376 HSSP:P52298
GeneTree:ENSGT00700000104103 KO:K12890 OMA:MPRGGSE ChiTaRS:SRSF1
EMBL:AF232773 EMBL:AF234157 EMBL:AY051919 RefSeq:NP_001247139.1
RefSeq:NP_652611.1 UniGene:Dm.4443 SMR:Q9V3W7 IntAct:Q9V3W7
MINT:MINT-336709 STRING:Q9V3W7 EnsemblMetazoa:FBtr0083272
EnsemblMetazoa:FBtr0304727 GeneID:53443 KEGG:dme:Dmel_CG6987
UCSC:CG6987-RA CTD:53443 FlyBase:FBgn0040284 InParanoid:Q9V3W7
OrthoDB:EOG41VHK9 GenomeRNAi:53443 NextBio:841181 Uniprot:Q9V3W7
Length = 255
Score = 140 (54.3 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 62/214 (28%), Positives = 88/214 (41%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE-----RG-----RHRDGSKSM 59
FAFV FED RDA DA++ D + YD RL VE+ RG RG R RDG M
Sbjct: 46 FAFVEFEDARDADDAVKARDG--YDYDGYRLRVEFPRGGGPGSYRGGNRNDRSRDGGGRM 103
Query: 60 ANQRP----TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFA-FVQFETQEEAT 114
+ P ++ ++ P +D+K H G+V ++ + V+F E+
Sbjct: 104 GGRGPPAKRSQYRVMVTGLPASGSWQDLKDHMREAGDVCFADTYKDGSGVVEFLRHEDMK 163
Query: 115 KALESTDRSKLVDRVISVEYA-LKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXX 173
A++ D S+ V Y +++DS +DR GG G
Sbjct: 164 YAIKKLDDSRFRSHEGEVAYIRVREDSGDNDR------GGGGGGSGGGGGGSGGGGSRDY 217
Query: 174 XDYGRGRS-PAYDRYNG-PVYDQRRSPDHGRHRS 205
D R RS + R G P Y R + R RS
Sbjct: 218 RDRSRSRSFSSRPRRRGTPTYSPVRRQSYSRSRS 251
>UNIPROTKB|D6R9D6 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965625
ProteinModelPortal:D6R9D6 SMR:D6R9D6 Ensembl:ENST00000510871
ArrayExpress:D6R9D6 Bgee:D6R9D6 Uniprot:D6R9D6
Length = 393
Score = 143 (55.4 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 48/147 (32%), Positives = 72/147 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNL-MIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGG 153
+ V A D E+ RY RGG
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQKAARGG 334
>RGD|1309495 [details] [associations]
symbol:Srsf9 "serine/arginine-rich splicing factor 9"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309495 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048025 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12890 CTD:8683
OMA:DIREHEI OrthoDB:EOG4CC42K EMBL:BC087684 IPI:IPI00371124
RefSeq:NP_001009255.1 UniGene:Rn.136718 ProteinModelPortal:Q5PPI1
SMR:Q5PPI1 STRING:Q5PPI1 PhosphoSite:Q5PPI1 PRIDE:Q5PPI1
Ensembl:ENSRNOT00000001539 GeneID:288701 KEGG:rno:288701
UCSC:RGD:1309495 InParanoid:Q5PPI1 NextBio:628577
Genevestigator:Q5PPI1 GermOnline:ENSRNOG00000001163 Uniprot:Q5PPI1
Length = 221
Score = 131 (51.2 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 43/150 (28%), Positives = 67/150 (44%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
FAFV FED RDA DAI G + +G R R+ A G RG S++ R +
Sbjct: 54 FAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRAYGGRGGWPRASRNGPPTRRSDFRV 113
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDR 128
+++ P +D+K H G+V + ++++ V++ +E+ AL D +K
Sbjct: 114 LVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKFRSH 173
Query: 129 VISVEYALKDDSERDDRY--DSPRRGGYGR 156
Y ++ ER Y R G GR
Sbjct: 174 EGETSY-IRVYPERGTSYGCSRSRSGSRGR 202
Score = 35 (17.4 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 176 YGRGRSPAYDRYNGPVYDQRRSPDH 200
YG RS + R Y R SP +
Sbjct: 190 YGCSRSRSGSRGRDSPYQSRGSPHY 214
>WB|WBGene00004702 [details] [associations]
symbol:rsp-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0048477
GO:GO:0003723 GO:GO:0040035 GO:GO:0000398 eggNOG:COG0724
EMBL:FO081595 GO:GO:0001703 GeneTree:ENSGT00700000104103 PIR:T16953
RefSeq:NP_495307.3 RefSeq:NP_495308.3 RefSeq:NP_495309.3
RefSeq:NP_495310.1 ProteinModelPortal:Q10021 SMR:Q10021
STRING:Q10021 PaxDb:Q10021 PRIDE:Q10021 EnsemblMetazoa:T28D9.2a
GeneID:174073 KEGG:cel:CELE_T28D9.2 UCSC:T28D9.2d CTD:174073
WormBase:T28D9.2a WormBase:T28D9.2b WormBase:T28D9.2c
WormBase:T28D9.2d InParanoid:Q10021 OMA:SKISVEW NextBio:882389
Uniprot:Q10021
Length = 208
Score = 132 (51.5 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 42/153 (27%), Positives = 63/153 (41%)
Query: 75 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134
P RERD++R + YG + ++ ++ FAFV FE +A A D + + +
Sbjct: 10 PYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVV 69
Query: 135 ALKDDSER-DDRYDS--PRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPV 191
+ R +DR+ S PRR R RS + R PV
Sbjct: 70 EMARGKPRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPV 129
Query: 192 YDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 224
+ RR + RSP P D +R + R+RSP
Sbjct: 130 RESRRRSES---RSPSPKRDLKR--EASRSRSP 157
Score = 124 (48.7 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 39/85 (45%), Positives = 44/85 (51%)
Query: 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE-RGRHRDGSKSMAN 61
IS+ Y GFAFV FED RDA DA LD RL VE ARG+ RG R GS+S
Sbjct: 31 ISMKY-GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMARGKPRGNDRHGSRS-PR 88
Query: 62 QRPTKTLFVINFDPIR-TRERDIKR 85
+R P R +R RD KR
Sbjct: 89 RRSRSPRRRSRTPPRRRSRSRDRKR 113
Score = 43 (20.2 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 19/51 (37%), Positives = 23/51 (45%)
Query: 180 RSPAYDRYNGPVYDQRRSP----DHGRHRSPVPVY---DRRRSPDYGRNRS 223
RSP+ R + RSP D R RS P DR+RS GR+ S
Sbjct: 139 RSPSPKRDLKREASRSRSPLPAKDRSRTRSGSPPKNGGDRKRSVSRGRSHS 189
>UNIPROTKB|Q10021 [details] [associations]
symbol:rsp-5 "Probable splicing factor,
arginine/serine-rich 5" species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=NAS] [GO:0008380 "RNA splicing"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0048477
GO:GO:0003723 GO:GO:0040035 GO:GO:0000398 eggNOG:COG0724
EMBL:FO081595 GO:GO:0001703 GeneTree:ENSGT00700000104103 PIR:T16953
RefSeq:NP_495307.3 RefSeq:NP_495308.3 RefSeq:NP_495309.3
RefSeq:NP_495310.1 ProteinModelPortal:Q10021 SMR:Q10021
STRING:Q10021 PaxDb:Q10021 PRIDE:Q10021 EnsemblMetazoa:T28D9.2a
GeneID:174073 KEGG:cel:CELE_T28D9.2 UCSC:T28D9.2d CTD:174073
WormBase:T28D9.2a WormBase:T28D9.2b WormBase:T28D9.2c
WormBase:T28D9.2d InParanoid:Q10021 OMA:SKISVEW NextBio:882389
Uniprot:Q10021
Length = 208
Score = 132 (51.5 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 42/153 (27%), Positives = 63/153 (41%)
Query: 75 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134
P RERD++R + YG + ++ ++ FAFV FE +A A D + + +
Sbjct: 10 PYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVV 69
Query: 135 ALKDDSER-DDRYDS--PRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPV 191
+ R +DR+ S PRR R RS + R PV
Sbjct: 70 EMARGKPRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPV 129
Query: 192 YDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 224
+ RR + RSP P D +R + R+RSP
Sbjct: 130 RESRRRSES---RSPSPKRDLKR--EASRSRSP 157
Score = 124 (48.7 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 39/85 (45%), Positives = 44/85 (51%)
Query: 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE-RGRHRDGSKSMAN 61
IS+ Y GFAFV FED RDA DA LD RL VE ARG+ RG R GS+S
Sbjct: 31 ISMKY-GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMARGKPRGNDRHGSRS-PR 88
Query: 62 QRPTKTLFVINFDPIR-TRERDIKR 85
+R P R +R RD KR
Sbjct: 89 RRSRSPRRRSRTPPRRRSRSRDRKR 113
Score = 43 (20.2 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 19/51 (37%), Positives = 23/51 (45%)
Query: 180 RSPAYDRYNGPVYDQRRSP----DHGRHRSPVPVY---DRRRSPDYGRNRS 223
RSP+ R + RSP D R RS P DR+RS GR+ S
Sbjct: 139 RSPSPKRDLKREASRSRSPLPAKDRSRTRSGSPPKNGGDRKRSVSRGRSHS 189
>UNIPROTKB|A6H7B7 [details] [associations]
symbol:SFRS5 "SFRS5 protein" species:9913 "Bos taurus"
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0009611 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
CTD:6430 OMA:RKSYTRS OrthoDB:EOG4RJG2V EMBL:DAAA02029514
EMBL:BC146185 IPI:IPI00687732 RefSeq:NP_001092399.1
UniGene:Bt.46079 STRING:A6H7B7 Ensembl:ENSBTAT00000015408
GeneID:510474 KEGG:bta:510474 InParanoid:A6H7B7 NextBio:20869461
Uniprot:A6H7B7
Length = 272
Score = 139 (54.0 bits), Expect = 7.5e-08, P = 7.5e-08
Identities = 65/233 (27%), Positives = 88/233 (37%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE------RGRHRD--GSKSMA 60
GF FV FED RDA DA+ LD +R +++E AR RGR+ D S+
Sbjct: 38 GFGFVEFEDPRDADDAVYELDGKELCSER--VTIEHARARSRGGRGRGRYSDRFSSRRPR 95
Query: 61 NQR----PTKT---LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR---NFAFVQFETQ 110
N R P +T L V N R +D+K G V R N V+F +
Sbjct: 96 NDRRNAPPVRTENRLIVENLSS-RVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASY 154
Query: 111 EEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXX 170
+ A+E ++ R I + K S R S R
Sbjct: 155 GDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSR 214
Query: 171 XXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 223
R +S + R P Q+R R +SP V DR+RS R+RS
Sbjct: 215 SRSRSRSRSKSRSVSRSPVPEKSQKRGSS-SRSKSPASV-DRQRSRSRSRSRS 265
Score = 114 (45.2 bits), Expect = 0.00012, P = 0.00012
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEYA 135
+++E+A
Sbjct: 65 ERVTIEHA 72
>UNIPROTKB|E2R8E5 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
KO:K12893 CTD:6430 OMA:RKSYTRS EMBL:AAEX03005813 RefSeq:XP_867135.1
RefSeq:XP_867196.2 ProteinModelPortal:E2R8E5
Ensembl:ENSCAFT00000026276 GeneID:490754 KEGG:cfa:490754
NextBio:20863714 Uniprot:E2R8E5
Length = 272
Score = 139 (54.0 bits), Expect = 7.5e-08, P = 7.5e-08
Identities = 65/233 (27%), Positives = 88/233 (37%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE------RGRHRD--GSKSMA 60
GF FV FED RDA DA+ LD +R +++E AR RGR+ D S+
Sbjct: 38 GFGFVEFEDPRDADDAVYELDGKELCSER--VTIEHARARSRGGRGRGRYSDRFSSRRPR 95
Query: 61 NQR----PTKT---LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR---NFAFVQFETQ 110
N R P +T L V N R +D+K G V R N V+F +
Sbjct: 96 NDRRNAPPVRTENRLIVENLSS-RVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASY 154
Query: 111 EEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXX 170
+ A+E ++ R I + K S R S R
Sbjct: 155 GDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSR 214
Query: 171 XXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 223
R +S + R P Q+R R +SP V DR+RS R+RS
Sbjct: 215 SRSRSRSRSKSRSVSRSPVPEKSQKRGSS-SRSKSPASV-DRQRSRSRSRSRS 265
Score = 114 (45.2 bits), Expect = 0.00012, P = 0.00012
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEYA 135
+++E+A
Sbjct: 65 ERVTIEHA 72
>UNIPROTKB|F1Q212 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:IGPNREY EMBL:AAEX03002529 EMBL:AAEX03002530
Ensembl:ENSCAFT00000025193 Uniprot:F1Q212
Length = 592
Score = 142 (55.0 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 48/147 (32%), Positives = 72/147 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 197 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 250
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ S + ++L
Sbjct: 251 YVRNL-MIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAVLAMNSLNGTELE 309
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGG 153
+ V A D E+ RY +GG
Sbjct: 310 GSCLEVTLAKPVDKEQYSRYQKAAKGG 336
Score = 36 (17.7 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 177 GRGRSPAYDRYNGP 190
GRGR A R GP
Sbjct: 383 GRGRGAAGSRAPGP 396
>UNIPROTKB|Q9XSR3 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 HSSP:Q9NQ94 EMBL:AJ388555 RefSeq:NP_001002955.1
UniGene:Cfa.124 ProteinModelPortal:Q9XSR3 SMR:Q9XSR3 GeneID:403423
KEGG:cfa:403423 CTD:54502 InParanoid:Q9XSR3 OrthoDB:EOG4THVTH
NextBio:20816943 Uniprot:Q9XSR3
Length = 592
Score = 142 (55.0 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 48/147 (32%), Positives = 72/147 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 197 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 250
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ S + ++L
Sbjct: 251 YVRNL-MIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAVLAMNSLNGTELE 309
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGG 153
+ V A D E+ RY +GG
Sbjct: 310 GSCLEVTLAKPVDKEQYSRYQKAAKGG 336
Score = 36 (17.7 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 177 GRGRSPAYDRYNGP 190
GRGR A R GP
Sbjct: 383 GRGRGAAGSRAPGP 396
>UNIPROTKB|A4FUC6 [details] [associations]
symbol:SFRS9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12890 CTD:8683 OrthoDB:EOG4CC42K
EMBL:DAAA02045453 EMBL:BC114699 IPI:IPI00690315
RefSeq:NP_001076867.1 RefSeq:XP_003585083.1 UniGene:Bt.30434
SMR:A4FUC6 STRING:A4FUC6 Ensembl:ENSBTAT00000016997
GeneID:100851440 GeneID:509905 KEGG:bta:100851440 KEGG:bta:509905
InParanoid:A4FUC6 OMA:PPPRHYR NextBio:20869189 Uniprot:A4FUC6
Length = 221
Score = 136 (52.9 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 46/152 (30%), Positives = 70/152 (46%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR--GERGRHRDGSKSMANQRPTKT 67
FAFV FED RDA DAI G + + Y + RL VE+ R G RG G +S R +
Sbjct: 54 FAFVRFEDPRDAEDAIYGRNG--YDYGQCRLRVEFPRTYGGRGGWPRGGRSGPPTRRSDF 111
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLV 126
+++ P +D+K H G+V + ++++ V++ +E+ AL D +K
Sbjct: 112 RVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDETKFR 171
Query: 127 DRVISVEYALKDDSERDDRY--DSPRRGGYGR 156
Y ++ ER Y R G GR
Sbjct: 172 SHEGETSY-IRVYPERSTSYGYSRSRSGSRGR 202
>UNIPROTKB|Q13243 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=TAS] [GO:0006406 "mRNA export from
nucleus" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0031124 "mRNA
3'-end processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0051726 GO:GO:0006406 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0006376 GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78
HOVERGEN:HBG002295 KO:K12893 EMBL:U30826 EMBL:U30884 EMBL:U30827
EMBL:BT007089 EMBL:AK311805 EMBL:CR542167 EMBL:CR542182
EMBL:BX640605 EMBL:AB451250 EMBL:BC018823 EMBL:BC040209
EMBL:AF020307 IPI:IPI00012341 IPI:IPI00221286 IPI:IPI00413654
PIR:S59042 RefSeq:NP_001034554.1 RefSeq:NP_008856.2
UniGene:Hs.632326 ProteinModelPortal:Q13243 SMR:Q13243
IntAct:Q13243 MINT:MINT-1400587 STRING:Q13243 PhosphoSite:Q13243
DMDM:3929378 PaxDb:Q13243 PRIDE:Q13243 DNASU:6430
Ensembl:ENST00000394366 Ensembl:ENST00000553521
Ensembl:ENST00000553635 Ensembl:ENST00000557154 GeneID:6430
KEGG:hsa:6430 UCSC:uc001xll.3 CTD:6430 GeneCards:GC14P070234
HGNC:HGNC:10787 HPA:HPA043484 MIM:600914 neXtProt:NX_Q13243
PharmGKB:PA35703 InParanoid:Q13243 OMA:RKSYTRS OrthoDB:EOG4RJG2V
PhylomeDB:Q13243 ChiTaRS:SRSF5 GenomeRNAi:6430 NextBio:24973
ArrayExpress:Q13243 Bgee:Q13243 CleanEx:HS_SFRS5
Genevestigator:Q13243 GermOnline:ENSG00000100650 Uniprot:Q13243
Length = 272
Score = 138 (53.6 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 65/238 (27%), Positives = 91/238 (38%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE------RGRHRD--GSKSMA 60
GF FV FED RDA DA+ LD +R +++E AR RGR+ D S+
Sbjct: 38 GFGFVEFEDPRDADDAVYELDGKELCSER--VTIEHARARSRGGRGRGRYSDRFSSRRPR 95
Query: 61 NQR----PTKT---LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR---NFAFVQFETQ 110
N R P +T L V N R +D+K G V R N V+F +
Sbjct: 96 NDRRNAPPVRTENRLIVENLSS-RVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASY 154
Query: 111 EEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXX 170
+ A+E ++ R I + K S R S R
Sbjct: 155 GDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSR 214
Query: 171 XXXXDYGRGRSPAYDRYNGPVYDQ-RRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 227
R RS + PV ++ ++ R +SP V DR+RS R+RS + G
Sbjct: 215 SRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASV-DRQRSRSRSRSRSVDSG 271
Score = 114 (45.2 bits), Expect = 0.00012, P = 0.00012
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEYA 135
+++E+A
Sbjct: 65 ERVTIEHA 72
>UNIPROTKB|Q5JRI1 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 HGNC:HGNC:16713 IPI:IPI00645384 SMR:Q5JRI1
Ensembl:ENST00000374453 Uniprot:Q5JRI1
Length = 172
Score = 125 (49.1 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 49/161 (30%), Positives = 65/161 (40%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V R R FA+VQFE +A
Sbjct: 8 PNTSLFVRNVAD-DTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKDDSE------RDDR--YDSPRRGGYGRHXXXXXXXXXX 167
AL + DR + R I +++A D ++ R Y S R Y R+
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYER 126
Query: 168 XXXXXXX-DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPV 207
DY RS Y N P RRS H + S V
Sbjct: 127 RRSRSRSFDYNYRRS--YSPRNRPTGRPRRSRSHSDNDSQV 165
>UNIPROTKB|F6RYN2 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:54502 OMA:IGPNREY EMBL:DAAA02017489 IPI:IPI00690190
RefSeq:NP_001192963.1 UniGene:Bt.22438 Ensembl:ENSBTAT00000003040
GeneID:540831 KEGG:bta:540831 NextBio:20878859 Uniprot:F6RYN2
Length = 591
Score = 140 (54.3 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 47/147 (31%), Positives = 72/147 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNL-MIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGG 153
+ V A D E+ RY +GG
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQKAAKGG 334
Score = 37 (18.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 177 GRGRSPAYDRYNGP 190
GRGR A +R GP
Sbjct: 382 GRGRGAAGNRAPGP 395
>UNIPROTKB|F1S4H0 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:IGPNREY EMBL:CU929922 RefSeq:XP_003128987.3
Ensembl:ENSSSCT00000009623 GeneID:100513606 KEGG:ssc:100513606
Uniprot:F1S4H0
Length = 591
Score = 140 (54.3 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 47/147 (31%), Positives = 72/147 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNL-MIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGG 153
+ V A D E+ RY +GG
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQKAAKGG 334
Score = 37 (18.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 177 GRGRSPAYDRYNGP 190
GRGR A +R GP
Sbjct: 382 GRGRGAAGNRAPGP 395
>UNIPROTKB|E2RK20 [details] [associations]
symbol:SRSF9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
GeneTree:ENSGT00700000104103 KO:K12890 CTD:8683 OMA:DIREHEI
EMBL:AAEX03014735 RefSeq:XP_534706.1 ProteinModelPortal:E2RK20
Ensembl:ENSCAFT00000016374 GeneID:477510 KEGG:cfa:477510
NextBio:20852976 Uniprot:E2RK20
Length = 221
Score = 134 (52.2 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 47/153 (30%), Positives = 69/153 (45%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR--GERGRH-RDGSKSMANQRPTK 66
FAFV FED RDA DAI G + + Y + RL VE+ R G RG R G +R
Sbjct: 54 FAFVRFEDPRDAEDAIYGRNG--YDYGQCRLRVEFPRTYGSRGGWPRGGRNGPPTRRSDF 111
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 125
+ V P + + D+K H G+V + ++++ V++ +E+ AL D +K
Sbjct: 112 RVLVSGLPPSGSWQ-DLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 170
Query: 126 VDRVISVEYALKDDSERDDRY--DSPRRGGYGR 156
Y ++ ER Y R G GR
Sbjct: 171 RSHEGETSY-IRVYPERSTSYGYSRSRSGSRGR 202
>TAIR|locus:2025092 [details] [associations]
symbol:SR45a "serine/arginine rich-like protein 45a"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0008380
"RNA splicing" evidence=NAS] [GO:0009644 "response to high light
intensity" evidence=IMP] [GO:0043484 "regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009644
GO:GO:0030529 GO:GO:0043484 eggNOG:COG0724 HSSP:Q14103
EMBL:BT005797 IPI:IPI00529615 RefSeq:NP_563787.2 UniGene:At.24511
ProteinModelPortal:Q84TH4 SMR:Q84TH4 STRING:Q84TH4
EnsemblPlants:AT1G07350.1 GeneID:837246 KEGG:ath:AT1G07350
TAIR:At1g07350 HOGENOM:HOG000239942 InParanoid:Q84TH4 OMA:SYSPYYR
ProtClustDB:CLSN2918464 ArrayExpress:Q84TH4 Genevestigator:Q84TH4
Uniprot:Q84TH4
Length = 382
Score = 139 (54.0 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 62/211 (29%), Positives = 87/211 (41%)
Query: 35 YDRRR-LSVEWARGERGRHRDGSKSMAN--QRPTKTLFVINFDPIRTRERDIKRHFEPYG 91
YD+RR SV R R ++S+++ + P +L+V R ERD++ HF G
Sbjct: 46 YDKRRGRSVS-----RSLSRSPTRSVSSDAENPGNSLYVTGLSH-RVTERDLEDHFAKEG 99
Query: 92 NV--LHV------RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERD 143
V +H+ R R F F+ ++ +A + + S D S L RVI+VE A + R
Sbjct: 100 KVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKARR----RR 155
Query: 144 DRYDSPR-----RGGYGRHXX------XXXXXXXXXXXXXXXDYGRGRSPAYDRYN---- 188
R +P R GRH D GR SP+Y R
Sbjct: 156 GRTPTPGKYLGLRTARGRHKSPSYSPRRSVSCSRSRSRSYSSDRGRSYSPSYGRRGRSSS 215
Query: 189 -GPVYDQRRSPDHGRHRSPVPVYDRRRSPDY 218
P Y +RR R SP Y+RRR Y
Sbjct: 216 YSPFYRRRRFYSPSRSPSPDDRYNRRRDRSY 246
>ZFIN|ZDB-GENE-040426-1950 [details] [associations]
symbol:srsf1a "serine/arginine-rich splicing
factor 1a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1950 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12890
EMBL:BX511308 EMBL:BC055511 EMBL:BC153596 EMBL:BC153597
IPI:IPI00487017 RefSeq:NP_998180.1 UniGene:Dr.75732
ProteinModelPortal:Q7SXP4 SMR:Q7SXP4 STRING:Q7SXP4
Ensembl:ENSDART00000080413 GeneID:406288 KEGG:dre:406288 CTD:406288
InParanoid:Q7SXP4 OrthoDB:EOG4WH8N5 NextBio:20817919
ArrayExpress:Q7SXP4 Bgee:Q7SXP4 Uniprot:Q7SXP4
Length = 257
Score = 101 (40.6 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 24/46 (52%), Positives = 27/46 (58%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDG 55
FAFV FED RDA DA+ D + YD RL VE+ R RG R G
Sbjct: 55 FAFVEFEDPRDAEDAVYARDG--YDYDGYRLRVEFPRSGRGMGRGG 98
Score = 75 (31.5 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 32/126 (25%), Positives = 45/126 (35%)
Query: 81 RDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 139
+D+K H G+V + + R+ V+F +E+ T A+ D +K Y
Sbjct: 144 QDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV-- 201
Query: 140 SERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPD 199
+ D PR YGR + R SP R P Y SP
Sbjct: 202 -----KVDGPRSPSYGR--SRSRSRSRSRSRSRSNNRSRSYSPRRSR-GSPQY----SPR 249
Query: 200 HGRHRS 205
H R RS
Sbjct: 250 HSRSRS 255
Score = 53 (23.7 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 193 DQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 223
D RSP +GR RS R RS R+RS
Sbjct: 204 DGPRSPSYGRSRSRSRSRSRSRSRSNNRSRS 234
Score = 47 (21.6 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 17/49 (34%), Positives = 21/49 (42%)
Query: 176 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSP-VPVYDRRRSPDYGRNRS 223
YGR RS + R RS + RS P Y SP + R+RS
Sbjct: 211 YGRSRSRSRSRSRSRSRSNNRSRSYSPRRSRGSPQY----SPRHSRSRS 255
>UNIPROTKB|F1RJJ0 [details] [associations]
symbol:SRSF9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
GeneTree:ENSGT00700000104103 OMA:DIREHEI EMBL:CU468509
ProteinModelPortal:F1RJJ0 Ensembl:ENSSSCT00000010856 Uniprot:F1RJJ0
Length = 221
Score = 133 (51.9 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 46/153 (30%), Positives = 68/153 (44%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR---GERGRHRDGSKSMANQRPTK 66
FAFV FED RDA DAI G + + Y + RL VE+ R G G R G +R
Sbjct: 54 FAFVRFEDPRDAEDAIYGRNG--YDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDF 111
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 125
+ V P + + D+K H G+V + ++++ V++ +E+ AL D +K
Sbjct: 112 RVLVSGLPPSGSWQ-DLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 170
Query: 126 VDRVISVEYALKDDSERDDRY--DSPRRGGYGR 156
Y ++ ER Y R G GR
Sbjct: 171 RSHEGETSY-IRVYPERSTSYGYSRSRSGSRGR 202
>UNIPROTKB|Q3ZBU5 [details] [associations]
symbol:FUSIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375
GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233 eggNOG:NOG312850
KO:K12900 OrthoDB:EOG4HMJBR OMA:PRYAYLI EMBL:DAAA02006422
EMBL:BC103100 IPI:IPI00708284 RefSeq:NP_001071594.1
UniGene:Bt.49361 Ensembl:ENSBTAT00000010616 GeneID:768310
KEGG:bta:768310 CTD:456627 InParanoid:Q3ZBU5 NextBio:20918570
Uniprot:Q3ZBU5
Length = 182
Score = 127 (49.8 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 51/176 (28%), Positives = 71/176 (40%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V R R FA+VQFE +A
Sbjct: 8 PNTSLFVRNVAD-DTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKDDSE------RDDR--YDSPRRGGYGRHXXXXXXXXXX 167
AL + DR + R I +++A D ++ R Y S R Y R+
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYDR 126
Query: 168 XXXXXXX-DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNR 222
DY RS Y N P RRS H + P ++ + S Y +R
Sbjct: 127 RRSRSRSFDYNYRRS--YSPRNRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTSR 180
>UNIPROTKB|Q5JRI3 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 DNASU:10772 GeneID:100996657 GeneID:10772
KEGG:hsa:100996657 KEGG:hsa:10772 CTD:10772 HGNC:HGNC:16713
KO:K12900 NextBio:40903 IPI:IPI00646643 RefSeq:NP_001177936.1
RefSeq:XP_003960062.1 SMR:Q5JRI3 Ensembl:ENST00000484146
UCSC:uc021oip.1 GenomeRNAi:10772 Uniprot:Q5JRI3
Length = 182
Score = 127 (49.8 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 51/176 (28%), Positives = 71/176 (40%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V R R FA+VQFE +A
Sbjct: 8 PNTSLFVRNVAD-DTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKDDSE------RDDR--YDSPRRGGYGRHXXXXXXXXXX 167
AL + DR + R I +++A D ++ R Y S R Y R+
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYER 126
Query: 168 XXXXXXX-DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNR 222
DY RS Y N P RRS H + P ++ + S Y +R
Sbjct: 127 RRSRSRSFDYNYRRS--YSPRNRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTSR 180
>UNIPROTKB|F6T1J1 [details] [associations]
symbol:SRSF4 "Serine/arginine-rich-splicing factor 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AL357500 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL590729 HGNC:HGNC:10786 ChiTaRS:SRSF4
IPI:IPI00908618 ProteinModelPortal:F6T1J1 SMR:F6T1J1
Ensembl:ENST00000546138 UCSC:uc010ofy.2 ArrayExpress:F6T1J1
Bgee:F6T1J1 Uniprot:F6T1J1
Length = 158
Score = 119 (46.9 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136
+ RERD++R F+ YG +L V ++ + FV+F+ +A A+ + L + VE+A
Sbjct: 12 QARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHAR 71
Query: 137 KDDSERDDRYDSPRRG-GYGR 156
RD Y S R G GY R
Sbjct: 72 --GPRRDGSYGSGRSGYGYRR 90
>UNIPROTKB|Q13242 [details] [associations]
symbol:SRSF9 "Serine/arginine-rich splicing factor 9"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 Reactome:REACT_1788
GO:GO:0048025 eggNOG:COG0724 GO:GO:0006376 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 EMBL:AL021546 HOVERGEN:HBG002295
UniGene:Hs.728777 KO:K12890 EMBL:U30825 EMBL:U87279 EMBL:U87277
EMBL:U87278 EMBL:BC093971 EMBL:BC093973 IPI:IPI00012340 PIR:S59075
RefSeq:NP_003760.1 UniGene:Hs.706889 ProteinModelPortal:Q13242
SMR:Q13242 DIP:DIP-40741N IntAct:Q13242 MINT:MINT-133565
STRING:Q13242 PhosphoSite:Q13242 DMDM:3929377 PaxDb:Q13242
PeptideAtlas:Q13242 PRIDE:Q13242 Ensembl:ENST00000229390
GeneID:8683 KEGG:hsa:8683 UCSC:uc001tyi.3 CTD:8683
GeneCards:GC12M120900 HGNC:HGNC:10791 HPA:HPA049849 MIM:601943
neXtProt:NX_Q13242 PharmGKB:PA35707 InParanoid:Q13242 OMA:DIREHEI
OrthoDB:EOG4CC42K PhylomeDB:Q13242 GenomeRNAi:8683 NextBio:32569
Bgee:Q13242 CleanEx:HS_SFRS9 Genevestigator:Q13242
GermOnline:ENSG00000111786 Uniprot:Q13242
Length = 221
Score = 132 (51.5 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 46/153 (30%), Positives = 68/153 (44%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR---GERGRHRDGSKSMANQRPTK 66
FAFV FED RDA DAI G + + Y + RL VE+ R G G R G +R
Sbjct: 54 FAFVRFEDPRDAEDAIYGRNG--YDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDF 111
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 125
+ V P + + D+K H G+V + ++++ V++ +E+ AL D +K
Sbjct: 112 RVLVSGLPPSGSWQ-DLKDHMREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKF 170
Query: 126 VDRVISVEYALKDDSERDDRY--DSPRRGGYGR 156
Y ++ ER Y R G GR
Sbjct: 171 RSHEGETSY-IRVYPERSTSYGYSRSRSGSRGR 202
>MGI|MGI:104896 [details] [associations]
symbol:Srsf9 "serine/arginine-rich splicing factor 9"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104896 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104103 KO:K12890 CTD:8683 OMA:DIREHEI
EMBL:AK011621 EMBL:AK020084 EMBL:BC012217 IPI:IPI00132340
RefSeq:NP_079849.1 UniGene:Mm.287826 PDB:1WG4 PDBsum:1WG4
ProteinModelPortal:Q9D0B0 SMR:Q9D0B0 STRING:Q9D0B0
PhosphoSite:Q9D0B0 PaxDb:Q9D0B0 PRIDE:Q9D0B0
Ensembl:ENSMUST00000031513 GeneID:108014 KEGG:mmu:108014
UCSC:uc008zdq.1 InParanoid:Q9D0B0 EvolutionaryTrace:Q9D0B0
NextBio:359885 Bgee:Q9D0B0 CleanEx:MM_SFRS9 Genevestigator:Q9D0B0
GermOnline:ENSMUSG00000029538 Uniprot:Q9D0B0
Length = 222
Score = 132 (51.5 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 45/152 (29%), Positives = 71/152 (46%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR--GERGRHRDGSKSMANQRPTKT 67
FAFV FED RDA DAI G + + Y + RL VE+ R G RG G+++ R +
Sbjct: 55 FAFVRFEDPRDAEDAIYGRNG--YDYGQCRLRVEFPRTYGGRGGWPRGARNGPPTRRSDF 112
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLV 126
+++ P +D+K H G+V + ++++ V++ +E+ AL D +K
Sbjct: 113 RVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKFR 172
Query: 127 DRVISVEYALKDDSERDDRY--DSPRRGGYGR 156
Y ++ ER Y R G GR
Sbjct: 173 SHEGETSY-IRVYPERSTSYGYSRSRSGSRGR 203
>WB|WBGene00004700 [details] [associations]
symbol:rsp-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0003723 GO:GO:0040035 eggNOG:COG0724
GO:GO:0006376 GO:GO:0001703 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 EMBL:AF242767 EMBL:AL132904 RefSeq:NP_499649.2
ProteinModelPortal:Q9NEW6 SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6
PRIDE:Q9NEW6 EnsemblMetazoa:Y111B2A.18.1
EnsemblMetazoa:Y111B2A.18.2 EnsemblMetazoa:Y111B2A.18.3
GeneID:176688 KEGG:cel:CELE_Y111B2A.18 UCSC:Y111B2A.18.1 CTD:176688
WormBase:Y111B2A.18 InParanoid:Q9NEW6 KO:K12890 OMA:MPRGGSE
NextBio:893608 Uniprot:Q9NEW6
Length = 258
Score = 99 (39.9 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 22/38 (57%), Positives = 25/38 (65%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 47
FAFV FED RDA DA+R D F D RR+ VE+ RG
Sbjct: 48 FAFVEFEDHRDAEDAVRARDGYEF--DGRRIRVEFTRG 83
Score = 85 (35.0 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRS 123
++V N P RE++++ F YG + +V I+ FAFV+FE +A A+ + D
Sbjct: 11 VYVGNL-PGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 124 KLVDRVISVEY 134
+ R I VE+
Sbjct: 70 EFDGRRIRVEF 80
Score = 75 (31.5 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 40/164 (24%), Positives = 54/164 (32%)
Query: 46 RGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAF 104
RG RG R G QR T ++ P +D+K H G+V + + R+
Sbjct: 106 RGGRGGGRGGGP----QRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDGTGV 161
Query: 105 VQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXX 164
V+F E+ A+ D +K Y R+D GG GR
Sbjct: 162 VEFTRYEDVKYAVRKLDDTKFRSHEGETAYI----RVREDNSSGGGSGGGGRDRSRSRSP 217
Query: 165 XXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVP 208
R RS + R RSP RSP P
Sbjct: 218 RAERRASPKYSPRRSRSRSRSRSRSRSRSASRSPS----RSPSP 257
Score = 70 (29.7 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 20/51 (39%), Positives = 23/51 (45%)
Query: 175 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 225
D R RSP +R P Y RRS R RS R RS +RSP+
Sbjct: 210 DRSRSRSPRAERRASPKYSPRRSRSRSRSRSR----SRSRSASRSPSRSPS 256
>UNIPROTKB|Q9NEW6 [details] [associations]
symbol:rsp-3 "Probable splicing factor,
arginine/serine-rich 3" species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0003723 "RNA binding"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723 GO:GO:0040035
eggNOG:COG0724 GO:GO:0006376 GO:GO:0001703
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 EMBL:AF242767
EMBL:AL132904 RefSeq:NP_499649.2 ProteinModelPortal:Q9NEW6
SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6 PRIDE:Q9NEW6
EnsemblMetazoa:Y111B2A.18.1 EnsemblMetazoa:Y111B2A.18.2
EnsemblMetazoa:Y111B2A.18.3 GeneID:176688 KEGG:cel:CELE_Y111B2A.18
UCSC:Y111B2A.18.1 CTD:176688 WormBase:Y111B2A.18 InParanoid:Q9NEW6
KO:K12890 OMA:MPRGGSE NextBio:893608 Uniprot:Q9NEW6
Length = 258
Score = 99 (39.9 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 22/38 (57%), Positives = 25/38 (65%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 47
FAFV FED RDA DA+R D F D RR+ VE+ RG
Sbjct: 48 FAFVEFEDHRDAEDAVRARDGYEF--DGRRIRVEFTRG 83
Score = 85 (35.0 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRS 123
++V N P RE++++ F YG + +V I+ FAFV+FE +A A+ + D
Sbjct: 11 VYVGNL-PGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 124 KLVDRVISVEY 134
+ R I VE+
Sbjct: 70 EFDGRRIRVEF 80
Score = 75 (31.5 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 40/164 (24%), Positives = 54/164 (32%)
Query: 46 RGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAF 104
RG RG R G QR T ++ P +D+K H G+V + + R+
Sbjct: 106 RGGRGGGRGGGP----QRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDGTGV 161
Query: 105 VQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXX 164
V+F E+ A+ D +K Y R+D GG GR
Sbjct: 162 VEFTRYEDVKYAVRKLDDTKFRSHEGETAYI----RVREDNSSGGGSGGGGRDRSRSRSP 217
Query: 165 XXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVP 208
R RS + R RSP RSP P
Sbjct: 218 RAERRASPKYSPRRSRSRSRSRSRSRSRSASRSPS----RSPSP 257
Score = 70 (29.7 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 20/51 (39%), Positives = 23/51 (45%)
Query: 175 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 225
D R RSP +R P Y RRS R RS R RS +RSP+
Sbjct: 210 DRSRSRSPRAERRASPKYSPRRSRSRSRSRSR----SRSRSASRSPSRSPS 256
>MGI|MGI:98287 [details] [associations]
symbol:Srsf5 "serine/arginine-rich splicing factor 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0009611 "response to
wounding" evidence=IDA] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0050733 "RS domain binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98287 GO:GO:0009611 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 EMBL:CH466590 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12893 CTD:6430
EMBL:AF020308 EMBL:AK146624 EMBL:AC125092 EMBL:BC082593
IPI:IPI00314709 IPI:IPI00830743 RefSeq:NP_001073162.1
RefSeq:NP_001073163.1 RefSeq:NP_033185.2 UniGene:Mm.43331
ProteinModelPortal:O35326 DIP:DIP-48724N STRING:O35326
PhosphoSite:O35326 PaxDb:O35326 PRIDE:O35326
Ensembl:ENSMUST00000094693 Ensembl:ENSMUST00000110352
Ensembl:ENSMUST00000110356 GeneID:20384 KEGG:mmu:20384
UCSC:uc007obn.1 NextBio:298306 Genevestigator:O35326
GermOnline:ENSMUSG00000021134 Uniprot:O35326
Length = 269
Score = 134 (52.2 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 66/237 (27%), Positives = 90/237 (37%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE------RGRHRD--GSKSMA 60
GF FV FED RDA DA+ LD +R +++E AR RGR+ D S+
Sbjct: 38 GFGFVEFEDPRDADDAVYELDGKELCSER--VTIEHARARSRGGRGRGRYSDRFSSRRPR 95
Query: 61 NQR----PTKT---LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR---NFAFVQFETQ 110
N R P +T L V N R +D+K G V R N V+F +
Sbjct: 96 NDRRNAPPVRTENRLIVENLSS-RVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASY 154
Query: 111 EEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXX 170
+ A+E ++ R I + K R R S R
Sbjct: 155 GDLKNAIEKLSGKEINGRKIKLIEGSKRHRSRS-RSRSRTRSSSRSRSRSRSRRSKSYSR 213
Query: 171 XXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 227
R +S + R P Q+R R +SP V DR+RS R+RS + G
Sbjct: 214 SRSRSRSRSKSRSGSRSPVPEKSQKRGSS-SRSKSPASV-DRQRSRSRSRSRSVDSG 268
Score = 114 (45.2 bits), Expect = 0.00012, P = 0.00012
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEYA 135
+++E+A
Sbjct: 65 ERVTIEHA 72
>RGD|3664 [details] [associations]
symbol:Srsf5 "serine/arginine-rich splicing factor 5" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0009611
"response to wounding" evidence=ISO] [GO:0016607 "nuclear speck"
evidence=ISO;ISS] [GO:0050733 "RS domain binding" evidence=ISO]
[GO:0051726 "regulation of cell cycle" evidence=IEP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3664 GO:GO:0005737 GO:GO:0009611 GO:GO:0005730
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0051726
eggNOG:COG0724 HOVERGEN:HBG002295 KO:K12893 CTD:6430
OrthoDB:EOG4RJG2V EMBL:L13635 EMBL:AF020683 EMBL:BC058479 EMBL:L33267
IPI:IPI00201490 IPI:IPI00231768 PIR:B47112 RefSeq:NP_001182434.1
RefSeq:NP_001182435.1 RefSeq:NP_062130.2 UniGene:Rn.54448
ProteinModelPortal:Q09167 SMR:Q09167 STRING:Q09167 PhosphoSite:Q09167
PRIDE:Q09167 Ensembl:ENSRNOT00000058290 GeneID:29667 KEGG:rno:29667
UCSC:RGD:3664 NextBio:609979 ArrayExpress:Q09167
Genevestigator:Q09167 GermOnline:ENSRNOG00000005513 Uniprot:Q09167
Length = 269
Score = 134 (52.2 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 66/237 (27%), Positives = 90/237 (37%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE------RGRHRD--GSKSMA 60
GF FV FED RDA DA+ LD +R +++E AR RGR+ D S+
Sbjct: 38 GFGFVEFEDPRDADDAVYELDGKELCSER--VTIEHARARSRGGRGRGRYSDRFSSRRPR 95
Query: 61 NQR----PTKT---LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR---NFAFVQFETQ 110
N R P +T L V N R +D+K G V R N V+F +
Sbjct: 96 NDRRNAPPVRTENRLIVENLSS-RVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASY 154
Query: 111 EEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXX 170
+ A+E ++ R I + K R R S R
Sbjct: 155 GDLKNAIEKLSGKEINGRKIKLIEGSKRHRSRS-RSRSRTRSSSRSRSRSRSRRSKSYSR 213
Query: 171 XXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 227
R +S + R P Q+R R +SP V DR+RS R+RS + G
Sbjct: 214 SRSRSRSRSKSRSGSRSPVPEKSQKRGSS-SRSKSPASV-DRQRSRSRSRSRSVDSG 268
Score = 114 (45.2 bits), Expect = 0.00012, P = 0.00012
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEYA 135
+++E+A
Sbjct: 65 ERVTIEHA 72
>UNIPROTKB|Q09167 [details] [associations]
symbol:Srsf5 "Serine/arginine-rich splicing factor 5"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:3664 GO:GO:0005737 GO:GO:0009611
GO:GO:0005730 GO:GO:0006355 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 GO:GO:0051726 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K12893 CTD:6430 OrthoDB:EOG4RJG2V EMBL:L13635 EMBL:AF020683
EMBL:BC058479 EMBL:L33267 IPI:IPI00201490 IPI:IPI00231768
PIR:B47112 RefSeq:NP_001182434.1 RefSeq:NP_001182435.1
RefSeq:NP_062130.2 UniGene:Rn.54448 ProteinModelPortal:Q09167
SMR:Q09167 STRING:Q09167 PhosphoSite:Q09167 PRIDE:Q09167
Ensembl:ENSRNOT00000058290 GeneID:29667 KEGG:rno:29667
UCSC:RGD:3664 NextBio:609979 ArrayExpress:Q09167
Genevestigator:Q09167 GermOnline:ENSRNOG00000005513 Uniprot:Q09167
Length = 269
Score = 134 (52.2 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 66/237 (27%), Positives = 90/237 (37%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE------RGRHRD--GSKSMA 60
GF FV FED RDA DA+ LD +R +++E AR RGR+ D S+
Sbjct: 38 GFGFVEFEDPRDADDAVYELDGKELCSER--VTIEHARARSRGGRGRGRYSDRFSSRRPR 95
Query: 61 NQR----PTKT---LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR---NFAFVQFETQ 110
N R P +T L V N R +D+K G V R N V+F +
Sbjct: 96 NDRRNAPPVRTENRLIVENLSS-RVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASY 154
Query: 111 EEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXX 170
+ A+E ++ R I + K R R S R
Sbjct: 155 GDLKNAIEKLSGKEINGRKIKLIEGSKRHRSRS-RSRSRTRSSSRSRSRSRSRRSKSYSR 213
Query: 171 XXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 227
R +S + R P Q+R R +SP V DR+RS R+RS + G
Sbjct: 214 SRSRSRSRSKSRSGSRSPVPEKSQKRGSS-SRSKSPASV-DRQRSRSRSRSRSVDSG 268
Score = 114 (45.2 bits), Expect = 0.00012, P = 0.00012
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEYA 135
+++E+A
Sbjct: 65 ERVTIEHA 72
>UNIPROTKB|E1BVJ8 [details] [associations]
symbol:SRSF5A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AADN02003170 EMBL:AADN02003171
IPI:IPI00823174 ProteinModelPortal:E1BVJ8
Ensembl:ENSGALT00000015443 OMA:FEDSRNH ArrayExpress:E1BVJ8
Uniprot:E1BVJ8
Length = 254
Score = 133 (51.9 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 64/220 (29%), Positives = 87/220 (39%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSK-SMANQR---- 63
GF FV FED RDA DAI L+ D RR+++E AR RGR R + S +Q
Sbjct: 38 GFGFVEFEDHRDADDAIYELNGKEL-CDERRVTIEHARARRGRGRFAQRFSYYSQSGSSR 96
Query: 64 ---PTKTLFVINFDPIRTRE--RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATK 115
P +T I + + +R +D+K G V +V R RN V+F + +
Sbjct: 97 YGPPVRTEHRIIVENLSSRISWQDLKDVMRKAGEVTYVDAHRNNRNEGVVEFASYSDMKS 156
Query: 116 ALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXD 175
ALE D ++L R I L +D R R S R R
Sbjct: 157 ALEKLDGTELNGRRIK----LIEDHRRHSRSRSRSRS---RSRSRSRSRSRSRSRSRSRS 209
Query: 176 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRS 215
R R+P Y Q+ SP P +R+S
Sbjct: 210 RSRSRTPKKS------YSQKSHRSSLPASSPSPSSSKRKS 243
Score = 112 (44.5 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 20/60 (33%), Positives = 37/60 (61%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD-RVISVEYA 135
R RERD+++ F+ YG + + ++ F FV+FE +A A+ + +L D R +++E+A
Sbjct: 14 RARERDVEKFFKGYGRIREIHLKNGFGFVEFEDHRDADDAIYELNGKELCDERRVTIEHA 73
Score = 38 (18.4 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 196 RSPDHGRHRSPVPVYDRRRSPDYGRNRSP 224
RS R RS R RS R+R+P
Sbjct: 188 RSRSRSRSRSRSRSRSRSRSRSRSRSRTP 216
Score = 36 (17.7 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 192 YDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 223
+ + RS R RS R RS R+RS
Sbjct: 180 HSRSRSRSRSRSRSRSRSRSRSRSRSRSRSRS 211
>UNIPROTKB|E1BVJ9 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:54502 OMA:IGPNREY EMBL:AADN02031225 IPI:IPI00588745
RefSeq:XP_003641292.1 UniGene:Gga.25965 ProteinModelPortal:E1BVJ9
Ensembl:ENSGALT00000023079 GeneID:770355 KEGG:gga:770355
Uniprot:E1BVJ9
Length = 597
Score = 137 (53.3 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 48/147 (32%), Positives = 71/147 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F T+E+A A+ + + +L
Sbjct: 249 YVRNL-MIETTEDTIKKVFGQFNPGCVERVKKIRDYAFVHFTTREDAIHAMNNLNGVELE 307
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGG 153
+ V A D E+ RY +GG
Sbjct: 308 GSCLEVTLAKPVDKEQYTRYQKAAKGG 334
Score = 37 (18.1 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 177 GRGRSPAYDRYNGP 190
GRGR A +R GP
Sbjct: 382 GRGRGAAGNRAPGP 395
>UNIPROTKB|E9PLB0 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00979194
ProteinModelPortal:E9PLB0 SMR:E9PLB0 Ensembl:ENST00000531969
ArrayExpress:E9PLB0 Bgee:E9PLB0 Uniprot:E9PLB0
Length = 143
Score = 117 (46.2 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 38/122 (31%), Positives = 63/122 (51%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
+ FV+ ED A DAIR L + + ++VE ++ +KS A+ TK L
Sbjct: 37 YGFVHIEDKTAAEDAIRNLHH--YKLHGVNINVEASK---------NKSKAS---TK-LH 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N P T + +++ FE YG V+ I +++AFV E E+A +A+ D ++ R+
Sbjct: 82 VGNISPTCTNQ-ELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGRI 140
Query: 130 IS 131
I+
Sbjct: 141 IA 142
>TAIR|locus:2024770 [details] [associations]
symbol:SR34 "Serine/Arginine-Rich Protein Splicing Factor
34" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0035061 "interchromatin granule"
evidence=IDA] [GO:0016607 "nuclear speck" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC009525
eggNOG:COG0724 KO:K12890 EMBL:M98340 EMBL:AF001035 EMBL:AY085920
IPI:IPI00521934 IPI:IPI00538714 PIR:F86158 PIR:S71185
RefSeq:NP_563665.3 RefSeq:NP_850933.1 UniGene:At.24497
ProteinModelPortal:O22315 SMR:O22315 IntAct:O22315 STRING:O22315
PaxDb:O22315 PRIDE:O22315 EnsemblPlants:AT1G02840.1
EnsemblPlants:AT1G02840.3 GeneID:839262 KEGG:ath:AT1G02840
GeneFarm:4677 TAIR:At1g02840 InParanoid:O22315 OMA:PGPRSKS
PhylomeDB:O22315 ProtClustDB:CLSN2690659 Genevestigator:O22315
GO:GO:0035061 Uniprot:O22315
Length = 303
Score = 134 (52.2 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 72/242 (29%), Positives = 98/242 (40%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPF-GYDRR-------RLSVEWARGE-----RGRHR-- 53
G+AFV F+D RDA DAI G D F G+ R R S + RG RG R
Sbjct: 46 GYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGR 105
Query: 54 -DGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFA-------FV 105
DG ++R + V P +D+K H G+V ++ R+ +
Sbjct: 106 GDGGSRGPSRRSEFRVLVTGL-PSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYT 164
Query: 106 QFETQEEATKALESTD-RSKLVDRVISV-EYALKDDSERDDRYDSPRRG-GYGRHXXXXX 162
+E + A K L+ T+ R+ + + V EY DS +D R SP RG Y +
Sbjct: 165 CYEDMKYALKKLDDTEFRNAFSNGYVRVREY----DSRKDSR--SPSRGRSYSK------ 212
Query: 163 XXXXXXXXXXXXDYGRGRSPAYDRYNGP-VYDQRRSPDHGRHRSPVPVYDRRRSPDYGRN 221
R RS + R P RRSP RSP P + RSP R+
Sbjct: 213 ----SRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGP-RSKSRSPSPRRS 267
Query: 222 RS 223
RS
Sbjct: 268 RS 269
Score = 90 (36.7 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 29/100 (29%), Positives = 47/100 (47%)
Query: 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---R--NFAFVQFETQEEATK 115
+ R ++T++V N P RER+++ F YG V+ + ++ R +AFV+F+ +A
Sbjct: 2 SSRSSRTVYVGNL-PGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 116 ALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYG 155
A+ D + VE A DD S GG G
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRG 100
Score = 62 (26.9 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 18/48 (37%), Positives = 21/48 (43%)
Query: 177 GRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 224
GR S + R G + RS R RSP RRSP +RSP
Sbjct: 207 GRSYSKSRSRSRGRSVSRSRSRSRSRSRSP-KAKSSRRSPAKSTSRSP 253
>UNIPROTKB|Q5ZLF9 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 OrthoDB:EOG4RJG2V EMBL:AADN02003156
EMBL:AJ719775 IPI:IPI00651527 UniGene:Gga.4502 STRING:Q5ZLF9
Ensembl:ENSGALT00000032618 Uniprot:Q5ZLF9
Length = 123
Score = 115 (45.5 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 26/88 (29%), Positives = 46/88 (52%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEYALKDDSER-----DDRYDSPR 150
+++E+A R DR+ S R
Sbjct: 65 ERVTIEHARARSRGRGRGRYSDRFSSRR 92
Score = 91 (37.1 bits), Expect = 0.00044, P = 0.00044
Identities = 29/75 (38%), Positives = 39/75 (52%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE-RGRHRDG-SKSMANQRPTK 66
GF FV FED RDA DA+ LD +R +++E AR RGR R S +++RP
Sbjct: 38 GFGFVEFEDPRDADDAVYELDGKELCSER--VTIEHARARSRGRGRGRYSDRFSSRRPRS 95
Query: 67 TLFVINFDPIRTRER 81
+ P+RT R
Sbjct: 96 DRR--SAPPLRTENR 108
>ZFIN|ZDB-GENE-030131-591 [details] [associations]
symbol:srsf4 "serine/arginine-rich splicing factor
4" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-591 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
CTD:6429 EMBL:BC046895 EMBL:CR450687 IPI:IPI00503693
RefSeq:NP_955868.1 RefSeq:XP_003200617.1 UniGene:Dr.4165
Ensembl:ENSDART00000125200 GeneID:321872 KEGG:dre:321872
InParanoid:Q802Y1 NextBio:20807565 Uniprot:Q802Y1
Length = 366
Score = 118 (46.6 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136
R RE+D++R F+ YG +L V ++ + FV+F+ +A A+ + L + + VE+ +
Sbjct: 12 RAREKDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKDLCGKRVIVEHTI 71
Query: 137 ---KDDSERDDRYDSPRRGGYG 155
+D R R + RGG G
Sbjct: 72 GQRRDGGNRSGRSNRYGRGGGG 93
Score = 53 (23.7 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
Identities = 19/50 (38%), Positives = 21/50 (42%)
Query: 177 GRGRSPAYDRYNG---PVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 223
G RS A+ R P DQRR R RS RS Y R+RS
Sbjct: 312 GTHRSRAHSRSRSQTPPNADQRRE-SRSRSRSRSKSRSHSRSQSYSRSRS 360
>UNIPROTKB|B4DJK0 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich-splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AL157789
UniGene:Hs.632326 HGNC:HGNC:10787 ChiTaRS:SRSF5 EMBL:AL355837
EMBL:AK296113 IPI:IPI01025047 ProteinModelPortal:B4DJK0 SMR:B4DJK0
STRING:B4DJK0 Ensembl:ENST00000555349 ArrayExpress:B4DJK0
Bgee:B4DJK0 Uniprot:B4DJK0
Length = 124
Score = 114 (45.2 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEYA 135
+++E+A
Sbjct: 65 ERVTIEHA 72
Score = 95 (38.5 bits), Expect = 0.00016, P = 0.00016
Identities = 30/77 (38%), Positives = 40/77 (51%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR----GERGRHRDGSKSMANQRP 64
GF FV FED RDA DA+ LD +R +++E AR G RGR R + +++RP
Sbjct: 38 GFGFVEFEDPRDADDAVYELDGKELCSER--VTIEHARARSRGGRGRGRYSDR-FSSRRP 94
Query: 65 TKTLFVINFDPIRTRER 81
N P+RT R
Sbjct: 95 RNDRR--NAPPVRTENR 109
>UNIPROTKB|B4DUA4 [details] [associations]
symbol:SRSF5 "cDNA FLJ57437, highly similar to Splicing
factor, arginine/serine-rich 5" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
EMBL:AL157789 UniGene:Hs.632326 HGNC:HGNC:10787 ChiTaRS:SRSF5
EMBL:AL355837 EMBL:AK300560 IPI:IPI01009006
ProteinModelPortal:B4DUA4 SMR:B4DUA4 STRING:B4DUA4
Ensembl:ENST00000451983 Ensembl:ENST00000553369
Ensembl:ENST00000554021 UCSC:uc021rvj.1 ArrayExpress:B4DUA4
Bgee:B4DUA4 Uniprot:B4DUA4
Length = 138
Score = 114 (45.2 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEYA 135
+++E+A
Sbjct: 65 ERVTIEHA 72
>UNIPROTKB|G3V5K8 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich-splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0051726 "regulation
of cell cycle" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0009611
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0051726 EMBL:AL157789 HGNC:HGNC:10787 ChiTaRS:SRSF5
EMBL:AL355837 ProteinModelPortal:G3V5K8 SMR:G3V5K8
Ensembl:ENST00000553548 ArrayExpress:G3V5K8 Bgee:G3V5K8
Uniprot:G3V5K8
Length = 99
Score = 114 (45.2 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEYA 135
+++E+A
Sbjct: 65 ERVTIEHA 72
>ZFIN|ZDB-GENE-040426-1938 [details] [associations]
symbol:rbm4.3 "RNA binding motif protein 4.3"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016772
"transferase activity, transferring phosphorus-containing groups"
evidence=IEA] [GO:0004672 "protein kinase activity" evidence=IEA]
[GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-1938
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000020883 HOGENOM:HOG000026790
HOVERGEN:HBG062217 EMBL:AL928799 EMBL:BC067153 IPI:IPI00493442
RefSeq:NP_998482.1 UniGene:Dr.5277 SMR:Q6NXC1 STRING:Q6NXC1
Ensembl:ENSDART00000037817 Ensembl:ENSDART00000135207 GeneID:406277
KEGG:dre:406277 CTD:406277 InParanoid:Q6NXC1 OMA:RPYDAER
OrthoDB:EOG4J9N12 NextBio:20817910 Uniprot:Q6NXC1
Length = 341
Score = 120 (47.3 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 41/160 (25%), Positives = 64/160 (40%)
Query: 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALEST 120
NQ P K L V N + + + +++ FE YG V I +NFAFV +EA A++
Sbjct: 74 NQGPVK-LHVANVE--KGTDDELRALFEDYGTVAECAIIKNFAFVHMNNSDEAMDAIKGL 130
Query: 121 DRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYG-RHXXXXXXXXXXXXXXXXXDYGRG 179
D ++ + I V+ + +D Y P G + R+ G
Sbjct: 131 DNTEFQGKRIHVQISKSRPRGEEDDYGHPDAGYWPPRYPGERPEPPGYPRGRYGYPPGPP 190
Query: 180 RSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYG 219
P Y R +P + R R V Y++ R+ YG
Sbjct: 191 PPPPPPPPRRSPYPDRAAPAYERQRDVVDYYEKYRARPYG 230
Score = 48 (22.0 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 48
FAFV+ +D + A AI+ L + ++VE +RG+
Sbjct: 37 FAFVHMDDRKSATKAIKNLHL--YKLHGTPINVEASRGK 73
>MGI|MGI:1890577 [details] [associations]
symbol:Srsf4 "serine/arginine-rich splicing factor 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1890577 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295 OrthoDB:EOG41C6X9
ChiTaRS:SRSF4 EMBL:BC019437 EMBL:AB041587 IPI:IPI00139364
UniGene:Mm.2478 ProteinModelPortal:Q8VE97 SMR:Q8VE97 STRING:Q8VE97
PhosphoSite:Q8VE97 PaxDb:Q8VE97 PRIDE:Q8VE97 CleanEx:MM_SFRS4
Genevestigator:Q8VE97 GermOnline:ENSMUSG00000028911 Uniprot:Q8VE97
Length = 489
Score = 123 (48.4 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 62/238 (26%), Positives = 97/238 (40%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDR--RRLSVEWARGER--GRHRDGSKSMANQR- 63
G+ FV F+D RDA DA+ L+ G D R+ VE ARG R G + G +R
Sbjct: 36 GYGFVEFDDLRDADDAVYELN----GKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRS 91
Query: 64 -------PTKTLFVINFDPIRTR--ERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQE 111
PT+T + + + + +R +D+K + G V + + R+N ++F +
Sbjct: 92 GRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYS 151
Query: 112 EATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPR---RG-GYGRHXXXXXXXXXX 167
+ +ALE D +++ R I + K S R Y R R RH
Sbjct: 152 DMKRALEKLDGTEVNGRKIRLVED-KPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGS 210
Query: 168 XXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 225
R RS ++ R Q RS + +S P D + R+RSP+
Sbjct: 211 SKSSHSKSRSRSRSGSHSRSKSRSRSQSRSRSK-KEKSRSPSKDNKSR---SRSRSPD 264
Score = 119 (46.9 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136
+ RERD++R F+ YG +L V ++ + FV+F+ +A A+ + L + VE+A
Sbjct: 12 QARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHAR 71
Query: 137 KDDSERDDRYDSPRRG-GYGR 156
RD Y S R G GY R
Sbjct: 72 --GPRRDGSYGSGRSGYGYRR 90
Score = 54 (24.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 17/48 (35%), Positives = 21/48 (43%)
Query: 178 RGRSPAYDRYNGPVYDQRRSPDHG--RHRSPVPVYDRRRSPDYGRNRS 223
R RS + + N P + RS R RS P RSP R+RS
Sbjct: 438 RSRSTSKSKPNVPAESRSRSKSASKTRSRSKSPSRSASRSPSRSRSRS 485
>TAIR|locus:2133249 [details] [associations]
symbol:SR34b "Serine/Arginine-Rich Protein Splicing
Factor 34b" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0016926 "protein desumoylation" evidence=RCA] [GO:0050665
"hydrogen peroxide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K12890 IPI:IPI00522961 RefSeq:NP_567235.3
UniGene:At.3885 ProteinModelPortal:F4JHI7 SMR:F4JHI7
EnsemblPlants:AT4G02430.2 GeneID:828027 KEGG:ath:AT4G02430
OMA:VQFEDPR PhylomeDB:F4JHI7 Uniprot:F4JHI7
Length = 278
Score = 130 (50.8 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 74/240 (30%), Positives = 97/240 (40%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPF-GYDRR-------RLSVEWARGE---RGRH-RDGS 56
G+AFV FED RDA DAI G D F G+ R R S ARG RGR R G
Sbjct: 46 GYAFVEFEDARDADDAIYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGG 105
Query: 57 KSMANQR-PTKTL---FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFE 108
+R P++ V++ P +D+K H G V ++ R+ V +
Sbjct: 106 DGGGRERGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYT 165
Query: 109 TQEEATKALESTD-RSKLVDRVISV-EYALKDDSERDDRYDSPRRG-GYGRHXXXXXXXX 165
+ E+ AL+ T+ R+ + V EY DS RD R SP RG Y +
Sbjct: 166 SYEDMKYALDDTEFRNAFSHEYVRVREY----DSRRDSR--SPSRGRSYSKSRSRGRSPS 219
Query: 166 XXXXXXXXXDYGRGRSPAYDRYNGP-VYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 224
R RS + + P RRSP RSP R RS R+ SP
Sbjct: 220 RS----------RSRSRSRSKSRSPKAKSLRRSPAKSTSRSP-----RSRSRSKSRSLSP 264
>SGD|S000002840 [details] [associations]
symbol:NPL3 "RNA-binding protein" species:4932 "Saccharomyces
cerevisiae" [GO:0006406 "mRNA export from nucleus" evidence=IGI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IGI;IMP]
[GO:0005737 "cytoplasm" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA;IDA;IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006415 "translational termination" evidence=IGI;IMP]
[GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:2000805 "negative regulation of termination of
RNA polymerase II transcription, poly(A)-coupled" evidence=IMP;IDA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IMP;IDA] [GO:0000993 "RNA polymerase II core
binding" evidence=IPI] [GO:0017148 "negative regulation of
translation" evidence=IDA] [GO:0031370 "eukaryotic initiation
factor 4G binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000002840 EMBL:U33007 GO:GO:0005634 GO:GO:0005737
GO:GO:0005730 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BK006938 GO:GO:0030529 GO:GO:0006406 GO:GO:0000398
GO:GO:0006364 GO:GO:0032968 eggNOG:COG0724 GO:GO:0008143
EMBL:X70951 GO:GO:0006415 GeneTree:ENSGT00570000079107
GO:GO:0031370 RefSeq:NP_010725.3 GeneID:852047 KEGG:sce:YDR437W
KO:K03861 EMBL:X66019 EMBL:M86731 PIR:JN0866 RefSeq:NP_010720.3
PDB:2JVO PDB:2JVR PDB:2OSQ PDB:2OSR PDBsum:2JVO PDBsum:2JVR
PDBsum:2OSQ PDBsum:2OSR ProteinModelPortal:Q01560 SMR:Q01560
DIP:DIP-6464N IntAct:Q01560 MINT:MINT-600838 STRING:Q01560
PaxDb:Q01560 PeptideAtlas:Q01560 EnsemblFungi:YDR432W GeneID:852042
KEGG:sce:YDR432W CYGD:YDR432w OMA:ANQPLEV OrthoDB:EOG4BP4N7
EvolutionaryTrace:Q01560 NextBio:970290 Genevestigator:Q01560
GermOnline:YDR432W GO:GO:2000805 Uniprot:Q01560
Length = 414
Score = 113 (44.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 29/90 (32%), Positives = 46/90 (51%)
Query: 50 GRHRDGSKSMANQRP---TKT-LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFV 105
G H G M +++ + T LFV F P+ +E ++ F P+G + V+I FAFV
Sbjct: 105 GEHMHGRPPMHHRQEGELSNTRLFVRPF-PLDVQESELNEIFGPFGPMKEVKILNGFAFV 163
Query: 106 QFETQEEATKALESTDRSKLVDRVISVEYA 135
+FE E A KA+E ++ + V Y+
Sbjct: 164 EFEEAESAAKAIEEVHGKSFANQPLEVVYS 193
Score = 58 (25.5 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 27/71 (38%), Positives = 29/71 (40%)
Query: 139 DSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYD--RYN-GPVYDQR 195
DS R YDSPR GGY R YG R YD R + GP D
Sbjct: 348 DSPRGG-YDSPR-GGYSR---GGYGGPRNDYGPPRGSYGGSRG-GYDGPRGDYGPPRDAY 401
Query: 196 RSPDHGRHRSP 206
R+ D R RSP
Sbjct: 402 RTRDAPRERSP 412
Score = 52 (23.4 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 23/79 (29%), Positives = 25/79 (31%)
Query: 146 YDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDR--YNGPVYDQRRSPDHGRH 203
Y RGGYG + Y R Y R Y GP D P G +
Sbjct: 324 YGGYSRGGYGGYSRGGYGGSRGGYDSPRGGYDSPRG-GYSRGGYGGPRNDY--GPPRGSY 380
Query: 204 RSPVPVYDRRRSPDYGRNR 222
YD R DYG R
Sbjct: 381 GGSRGGYDGPRG-DYGPPR 398
Score = 51 (23.0 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 27/79 (34%), Positives = 30/79 (37%)
Query: 146 YDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRS 205
YDSPR GGY DYG R +Y G YD R D+G
Sbjct: 347 YDSPR-GGYD---SPRGGYSRGGYGGPRNDYGPPRG-SYGGSRGG-YDGPRG-DYG---- 395
Query: 206 PVPVYDRRRSPDYGRNRSP 224
P D R+ D R RSP
Sbjct: 396 --PPRDAYRTRDAPRERSP 412
>UNIPROTKB|Q13247 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich splicing factor 6"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471077 GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 Reactome:REACT_1788
GO:GO:0048025 eggNOG:COG0724 GO:GO:0006376 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 HOVERGEN:HBG002295 EMBL:AL031681
KO:K12893 ChiTaRS:SRSF6 OrthoDB:EOG41C6X9 CTD:6431 EMBL:U30883
EMBL:U30828 EMBL:U30829 EMBL:AK300411 EMBL:BC006832 IPI:IPI00012345
IPI:IPI00018203 IPI:IPI00215879 PIR:S59043 RefSeq:NP_006266.2
UniGene:Hs.6891 ProteinModelPortal:Q13247 SMR:Q13247 IntAct:Q13247
MINT:MINT-1474667 STRING:Q13247 PhosphoSite:Q13247 DMDM:20981728
PaxDb:Q13247 PRIDE:Q13247 DNASU:6431 Ensembl:ENST00000244020
Ensembl:ENST00000483871 GeneID:6431 KEGG:hsa:6431 UCSC:uc002xki.3
GeneCards:GC20P042087 HGNC:HGNC:10788 HPA:CAB034889 HPA:HPA029005
MIM:601944 neXtProt:NX_Q13247 PharmGKB:PA35704 InParanoid:Q13247
OMA:KPRSSHR PhylomeDB:Q13247 GenomeRNAi:6431 NextBio:24979
Bgee:Q13247 CleanEx:HS_SFRS6 Genevestigator:Q13247
GermOnline:ENSG00000124193 Uniprot:Q13247
Length = 344
Score = 116 (45.9 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 79 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138
RE+DI+R F YG +L V ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 14 REKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGP 73
Query: 139 DSERDDRYDSPRRGGYG 155
+RD R GG G
Sbjct: 74 RRDRDGYSYGSRSGGGG 90
Score = 51 (23.0 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 178 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 224
R RSP + G + + RS R SP+PV P R+ SP
Sbjct: 277 RSRSPK-ENGKGDIKSKSRSRSQSRSNSPLPV-----PPSKARSVSP 317
Score = 41 (19.5 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 176 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 227
Y RS + R +R S R RS R RS GR+RS + G
Sbjct: 191 YSGSRSRSRSRRRSRSRSRRSS--RSRSRSISKSRSRSRSRSKGRSRSRSKG 240
Score = 39 (18.8 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 178 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 223
+ RS + R N P+ P R SP P RS R++S
Sbjct: 292 KSRSRSQSRSNSPL---PVPPSKARSVSPPPKRATSRSRSRSRSKS 334
>RGD|1359241 [details] [associations]
symbol:Srsf6 "serine/arginine-rich splicing factor 6"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359241 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000276234 OrthoDB:EOG41C6X9 UniGene:Rn.3175
NextBio:679254 EMBL:BC087121 IPI:IPI00357978
ProteinModelPortal:Q5PQM1 STRING:Q5PQM1 PhosphoSite:Q5PQM1
UCSC:RGD:1359241 InParanoid:Q5PQM1 Genevestigator:Q5PQM1
Uniprot:Q5PQM1
Length = 339
Score = 116 (45.9 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 79 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138
RE+DI+R F YG +L + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 14 REKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKELCGERVIVEHARGP 73
Query: 139 DSERDDRYDSPRRGGYG 155
+RD R GG G
Sbjct: 74 RRDRDGYSYGSRSGGGG 90
Score = 85 (35.0 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 23/47 (48%), Positives = 29/47 (61%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDG 55
G+ FV FED RDA DA+ L++ +R + VE ARG R R RDG
Sbjct: 36 GYGFVEFEDSRDADDAVYELNSKELCGER--VIVEHARGPR-RDRDG 79
Score = 69 (29.3 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 38/175 (21%), Positives = 66/175 (37%)
Query: 64 PTKTLFVINFDPIRTR--ERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALE 118
P +T + + + + +R +D+K G V + + R N ++F + + +AL+
Sbjct: 105 PVRTEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALD 164
Query: 119 STDRSKLVDRVIS-VEYALKDDSERD-----DRYDSPRRG-GYGRHXXXXXXXXXXXXXX 171
D +++ R I +EY + R R S RR R
Sbjct: 165 KLDGTEINGRNIRLIEYKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRS 224
Query: 172 XXXDYGRGRSPAYDRYNGPVYDQRRSP--DHGRHRSPVPVYDRRRSPD-YGRNRS 223
+GRS + + + P D G H + R RS D YG++RS
Sbjct: 225 RSRSRSKGRSRSRSKGRKSRSKSKSKPKSDRGSHS-----HSRSRSKDKYGKSRS 274
Score = 49 (22.3 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 178 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 224
R RSP + G + + RS R SP+P P R+ SP
Sbjct: 277 RSRSPK-ENGKGDIKSKSRSRSQSRSHSPLPA-----PPSKARSMSP 317
Score = 41 (19.5 bits), Expect = 2.0e-05, Sum P(2) = 1.9e-05
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 176 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 227
Y RS + R +R S R RS R RS GR+RS + G
Sbjct: 191 YSGSRSRSRSRRRSRSRSRRSS--RSRSRSISKSRSRSRSRSKGRSRSRSKG 240
>UNIPROTKB|G3V6S8 [details] [associations]
symbol:Sfrs6 "Similar to dJ862K6.2.2 (Splicing factor,
arginine/serine-rich 6 (SRP55-2)(Isoform 2)), isoform CRA_a"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474005 GeneTree:ENSGT00700000104103 KO:K12893 OMA:CKERSHG
CTD:6431 RefSeq:NP_001014207.2 UniGene:Rn.3175
ProteinModelPortal:G3V6S8 SMR:G3V6S8 Ensembl:ENSRNOT00000008427
GeneID:362264 KEGG:rno:362264 NextBio:679254 Uniprot:G3V6S8
Length = 339
Score = 116 (45.9 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 79 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138
RE+DI+R F YG +L + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 14 REKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKELCGERVIVEHARGP 73
Query: 139 DSERDDRYDSPRRGGYG 155
+RD R GG G
Sbjct: 74 RRDRDGYSYGSRSGGGG 90
Score = 49 (22.3 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 178 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 224
R RSP + G + + RS R SP+P P R+ SP
Sbjct: 277 RSRSPK-ENGKGDIKSKSRSRSQSRSHSPLPA-----PPSKARSMSP 317
Score = 41 (19.5 bits), Expect = 2.0e-05, Sum P(2) = 1.9e-05
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 176 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 227
Y RS + R +R S R RS R RS GR+RS + G
Sbjct: 191 YSGSRSRSRSRRRSRSRSRRSS--RSRSRSISKSRSRSRSRSKGRSRSRSKG 240
>UNIPROTKB|F1NCV3 [details] [associations]
symbol:SRSF5A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AADN02003170 EMBL:AADN02003171
IPI:IPI00577087 Ensembl:ENSGALT00000038019 ArrayExpress:F1NCV3
Uniprot:F1NCV3
Length = 163
Score = 116 (45.9 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
R RERD+++ F+ YG + + ++ F FV+FE +A A+ + +L D +++E+A
Sbjct: 14 RARERDVEKFFKGYGRIREIHLKNGFGFVEFEDHRDADDAIYELNGKELCDERVTIEHA 72
>UNIPROTKB|H9KZ12 [details] [associations]
symbol:H9KZ12 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
GeneTree:ENSGT00690000102108 EMBL:AADN02043355 EMBL:AADN02043356
Ensembl:ENSGALT00000003015 OMA:HERDERQ Uniprot:H9KZ12
Length = 873
Score = 123 (48.4 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 40/134 (29%), Positives = 61/134 (45%)
Query: 34 GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNV 93
G D+++ SVE R + +D K A + L+V TR D+K F YG V
Sbjct: 374 GGDQKKSSVEEDRDSKQASKD-EKGRAGSGSGRNLWVSGLSS-STRATDLKNLFSKYGKV 431
Query: 94 LHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSER--D 143
+ ++ N + FV T EEATK + R++L ++ISVE A + + +
Sbjct: 432 VGAKVVTNARSPGARCYGFVTMSTSEEATKCINHLHRTELHGKMISVEKAKNEPAGKKPS 491
Query: 144 DRYDSPRRGGYGRH 157
DR + R RH
Sbjct: 492 DRKEGEARKEKDRH 505
Score = 50 (22.7 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 28/99 (28%), Positives = 33/99 (33%)
Query: 138 DDSERDDRY-DSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNG----PVY 192
DD RDD Y +R D GR + + DR G P
Sbjct: 732 DDGRRDDPYWPEAKRMALDDRYHSEFVRQDRFHDFDHRDRGRYQDHSLDRREGSRGIPDR 791
Query: 193 DQRRSPDHGRHRSPVPVYDRRRSPD----YGRNRSPNFG 227
D + PD RH P R S D YG +R N G
Sbjct: 792 DGQHYPDE-RHGGPER--HARESRDGWGGYGSDRRMNEG 827
>RGD|1561347 [details] [associations]
symbol:Srsf4 "serine/arginine-rich splicing factor 4"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1561347
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH473968
GeneTree:ENSGT00700000104103 KO:K12893 CTD:6429
RefSeq:NP_001102155.1 UniGene:Rn.63428 Ensembl:ENSRNOT00000013301
GeneID:362612 KEGG:rno:362612 OMA:KDRGETR NextBio:680578
Uniprot:G3V798
Length = 488
Score = 123 (48.4 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 62/238 (26%), Positives = 97/238 (40%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDR--RRLSVEWARGER--GRHRDGSKSMANQR- 63
G+ FV F+D RDA DA+ L+ G D R+ VE ARG R G + G +R
Sbjct: 36 GYGFVEFDDLRDADDAVYELN----GKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRS 91
Query: 64 -------PTKTLFVINFDPIRTR--ERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQE 111
PT+T + + + + +R +D+K + G V + + R+N ++F +
Sbjct: 92 GRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYS 151
Query: 112 EATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPR---RG-GYGRHXXXXXXXXXX 167
+ +ALE D +++ R I + K S R Y R R RH
Sbjct: 152 DMKRALEKLDGTEVNGRKIRLVED-KPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGS 210
Query: 168 XXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 225
R RS ++ R Q RS + +S P D + R+RSP+
Sbjct: 211 SKSSHSKSRSRSRSGSHSRSKSRSRSQSRSRSK-KEKSRSPSKDNKSR---SRSRSPD 264
Score = 119 (46.9 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136
+ RERD++R F+ YG +L V ++ + FV+F+ +A A+ + L + VE+A
Sbjct: 12 QARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHAR 71
Query: 137 KDDSERDDRYDSPRRG-GYGR 156
RD Y S R G GY R
Sbjct: 72 --GPRRDGSYGSGRSGYGYRR 90
Score = 48 (22.0 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 178 RGRSPAYDRYNGPVYDQRRSPDHG--RHRSPVPVYDRRRSPDYGRNRS 223
R RS + + + P + RS R RS P RSP R+RS
Sbjct: 437 RSRSTSKSKPSLPAESRSRSKSASKTRSRSKSPSRSASRSPSRSRSRS 484
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 131 (51.2 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 42/155 (27%), Positives = 73/155 (47%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+AFV FE+ D+ +A+ +N + R + +E+++ +R R G N PTKTL
Sbjct: 505 GYAFVEFENVEDSKEALENCNNTDI--EGRSIRLEYSQNDRER---GGGGRGNSGPTKTL 559
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALEST 120
FV T ++ +K F+ + RI + F FV F+ +++ A E+
Sbjct: 560 FVKGLSD-DTTDQTLKDSFD---GAIAARIATDRDTGSSKGFGFVDFDNEQDCKAAKEAM 615
Query: 121 DRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYG 155
D ++ ++++YA K E RGG+G
Sbjct: 616 DDGEIDGNKVTLDYA-KPKGEGGRGGFGGGRGGFG 649
>UNIPROTKB|Q06AA0 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
KO:K12893 CTD:6431 OMA:KPRSSHR EMBL:CU407126 EMBL:DQ972964
RefSeq:NP_001070685.1 UniGene:Ssc.9241 Ensembl:ENSSSCT00000008057
GeneID:768102 KEGG:ssc:768102 Uniprot:Q06AA0
Length = 345
Score = 115 (45.5 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 79 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138
RE+DI+R F YG +L + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 14 REKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGP 73
Query: 139 DSERDDRYDSPRRGGYG 155
+RD R GG G
Sbjct: 74 RRDRDGYSYGSRSGGGG 90
Score = 48 (22.0 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 16/47 (34%), Positives = 20/47 (42%)
Query: 178 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 224
R RSP + G V + RS R SP+P P R+ SP
Sbjct: 279 RSRSPK-ENGKGDVKSKSRSRSQSRSHSPLPA-----PPSKARSVSP 319
Score = 41 (19.5 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 176 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 227
Y RS + R +R S R RS R RS GR+RS + G
Sbjct: 191 YSGSRSRSRSRRRSRSRSRRSS--RSRSRSISKSRSRSRSRSKGRSRSRSKG 240
>UNIPROTKB|O75494 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IDA]
[GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=NAS]
[GO:0006376 "mRNA splice site selection" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005634 "nucleus" evidence=IC]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0016482
"cytoplasmic transport" evidence=IDA] [GO:0051082 "unfolded protein
binding" evidence=NAS] [GO:0006406 "mRNA export from nucleus"
evidence=NAS] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0050733 "RS domain binding"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=NAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0000244
GO:GO:0003723 GO:GO:0006406 GO:GO:0016482 GO:GO:0048025
GO:GO:0006376 HOVERGEN:HBG107480 EMBL:AL590609 EMBL:AF047448
EMBL:AF067730 EMBL:AF449427 EMBL:AY150180 EMBL:AY150181
EMBL:AF419331 EMBL:AF419332 EMBL:AY048592 EMBL:AK001286
EMBL:AK001656 EMBL:AK296175 EMBL:BC001107 EMBL:BC005039
EMBL:BC010074 IPI:IPI00009071 IPI:IPI00074587 IPI:IPI00386662
IPI:IPI00412643 IPI:IPI00979506 RefSeq:NP_001177934.1
RefSeq:NP_001177935.1 RefSeq:NP_001177938.1 RefSeq:NP_006616.1
RefSeq:NP_473357.1 RefSeq:XP_003846472.1 RefSeq:XP_003846473.1
RefSeq:XP_003960063.1 UniGene:Hs.3530 UniGene:Hs.652334
ProteinModelPortal:O75494 SMR:O75494 IntAct:O75494
MINT:MINT-5002282 STRING:O75494 PhosphoSite:O75494 PaxDb:O75494
PRIDE:O75494 DNASU:10772 Ensembl:ENST00000343255
Ensembl:ENST00000344989 Ensembl:ENST00000374452
Ensembl:ENST00000453840 Ensembl:ENST00000492112 GeneID:100996657
GeneID:10772 KEGG:hsa:100996657 KEGG:hsa:10772 UCSC:uc021oin.1
UCSC:uc021oio.1 UCSC:uc021oir.1 UCSC:uc021ois.1 CTD:10772
GeneCards:GC01M024293 HGNC:HGNC:16713 MIM:605221 neXtProt:NX_O75494
PharmGKB:PA28427 eggNOG:NOG312850 InParanoid:O75494 KO:K12900
OMA:FAYVQYT OrthoDB:EOG4HMJBR NextBio:40903 ArrayExpress:O75494
Bgee:O75494 Genevestigator:O75494 GermOnline:ENSG00000188529
GO:GO:0050733 Uniprot:O75494
Length = 262
Score = 124 (48.7 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 50/179 (27%), Positives = 71/179 (39%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V R R FA+VQFE +A
Sbjct: 8 PNTSLFVRNVAD-DTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKDDSE------RDDR--YDSPRRGGYGRHXXXXXXXXXX 167
AL + DR + R I +++A D ++ R Y S R Y R+
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYER 126
Query: 168 XXXXXXX-DYG--RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 223
DY R SP R G R D+ R + + R +S R++S
Sbjct: 127 RRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRSFSRSKSNSRSRSKS 185
>MGI|MGI:1333805 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISO;IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISO;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006376 "mRNA splice site selection"
evidence=ISO;IC] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=ISO;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO;IDA] [GO:0051082 "unfolded
protein binding" evidence=NAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1333805 GO:GO:0005654 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006406 GO:GO:0016482 GO:GO:0048025 GO:GO:0006376
HOVERGEN:HBG107480 EMBL:AL672076 GeneTree:ENSGT00700000104403
CTD:10772 eggNOG:NOG312850 KO:K12900 OMA:FAYVQYT OrthoDB:EOG4HMJBR
EMBL:AF042383 EMBL:AB015894 EMBL:AB015895 EMBL:AF060490
EMBL:AK014345 EMBL:AK168524 EMBL:AK168558 EMBL:BC037591
EMBL:BC043060 EMBL:BC083082 IPI:IPI00117232 IPI:IPI00473196
IPI:IPI00990689 RefSeq:NP_001073856.1 RefSeq:NP_034308.1
UniGene:Mm.10229 UniGene:Mm.472035 ProteinModelPortal:Q9R0U0
SMR:Q9R0U0 STRING:Q9R0U0 PhosphoSite:Q9R0U0 PaxDb:Q9R0U0
PRIDE:Q9R0U0 Ensembl:ENSMUST00000097844 Ensembl:ENSMUST00000105853
Ensembl:ENSMUST00000126641 GeneID:14105 KEGG:mmu:14105
UCSC:uc008vhb.1 UCSC:uc008vhd.1 InParanoid:B1AV44 ChiTaRS:SRSF10
NextBio:285142 Bgee:Q9R0U0 CleanEx:MM_FUSIP1 Genevestigator:Q9R0U0
GermOnline:ENSMUSG00000028676 Uniprot:Q9R0U0
Length = 262
Score = 124 (48.7 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 50/179 (27%), Positives = 71/179 (39%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V R R FA+VQFE +A
Sbjct: 8 PNTSLFVRNVAD-DTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKDDSE------RDDR--YDSPRRGGYGRHXXXXXXXXXX 167
AL + DR + R I +++A D ++ R Y S R Y R+
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYER 126
Query: 168 XXXXXXX-DYG--RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 223
DY R SP R G R D+ R + + R +S R++S
Sbjct: 127 RRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRSFSRSKSNSRSRSKS 185
>UNIPROTKB|F2Z3T5 [details] [associations]
symbol:Fusip1 "Protein Fusip1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0016482 "cytoplasmic
transport" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00195918
ProteinModelPortal:F2Z3T5 SMR:F2Z3T5 PRIDE:F2Z3T5
Ensembl:ENSRNOT00000011154 Uniprot:F2Z3T5
Length = 262
Score = 124 (48.7 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 50/179 (27%), Positives = 71/179 (39%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V R R FA+VQFE +A
Sbjct: 8 PNTSLFVRNVAD-DTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKDDSE------RDDR--YDSPRRGGYGRHXXXXXXXXXX 167
AL + DR + R I +++A D ++ R Y S R Y R+
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYER 126
Query: 168 XXXXXXX-DYG--RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 223
DY R SP R G R D+ R + + R +S R++S
Sbjct: 127 RRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRSFSRSKSNSRSRSKS 185
>RGD|1311067 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10116 "Rattus norvegicus" [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=ISO] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0016482 "cytoplasmic transport" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311067 GO:GO:0005654
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016482
GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375 HOGENOM:HOG000276233
CTD:10772 eggNOG:NOG312850 KO:K12900 IPI:IPI00195918 EMBL:BC098831
RefSeq:NP_001020909.1 UniGene:Rn.162118 ProteinModelPortal:Q4KM38
PhosphoSite:Q4KM38 GeneID:362630 KEGG:rno:362630 UCSC:RGD:1311067
InParanoid:Q4KM38 NextBio:680679 ArrayExpress:Q4KM38
Genevestigator:Q4KM38 Uniprot:Q4KM38
Length = 164
Score = 115 (45.5 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 46/154 (29%), Positives = 63/154 (40%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V R R FA+VQFE +A
Sbjct: 8 PNTSLFVRNVAD-DTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKDDSE------RDDR--YDSPRRGGYGRHXXXXXXXXXX 167
AL + DR + R I +++A D ++ R Y S R Y R+
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYER 126
Query: 168 XXXXXXX-DYGRGRSPAYDRYNGPVYDQRRSPDH 200
DY RS + R + P RRS H
Sbjct: 127 RRSRSRSFDYNYRRSYS-PRNSRPTGRPRRSRSH 159
>UNIPROTKB|E9PM61 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00977800
ProteinModelPortal:E9PM61 SMR:E9PM61 Ensembl:ENST00000524637
ArrayExpress:E9PM61 Bgee:E9PM61 Uniprot:E9PM61
Length = 147
Score = 107 (42.7 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 36/115 (31%), Positives = 59/115 (51%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
+ FV+ ED A DAIR L + + ++VE ++ +KS A+ TK L
Sbjct: 37 YGFVHIEDKTAAEDAIRNLHH--YKLHGVNINVEASK---------NKSKAS---TK-LH 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
V N P T + +++ FE YG V+ I +++AFV E E+A +A+ D ++
Sbjct: 82 VGNISPTCTNQ-ELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTE 135
>RGD|1306891 [details] [associations]
symbol:Rbm4 "RNA binding motif protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0002190 "cap-independent
translational initiation" evidence=ISO] [GO:0002192 "IRES-dependent
translational initiation" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494
"cytoplasmic stress granule" evidence=ISO] [GO:0016607 "nuclear
speck" evidence=ISO] [GO:0017148 "negative regulation of
translation" evidence=ISO] [GO:0032055 "negative regulation of
translation in response to stress" evidence=ISO] [GO:0032922
"circadian regulation of gene expression" evidence=ISO] [GO:0033554
"cellular response to stress" evidence=ISO] [GO:0035198 "miRNA
binding" evidence=ISO] [GO:0035278 "negative regulation of
translation involved in gene silencing by miRNA" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=ISO]
[GO:0045947 "negative regulation of translational initiation"
evidence=ISO] [GO:0046822 "regulation of nucleocytoplasmic
transport" evidence=ISO] [GO:0051149 "positive regulation of muscle
cell differentiation" evidence=ISO] [GO:0051403 "stress-activated
MAPK cascade" evidence=ISO] [GO:0097157 "pre-mRNA intronic binding"
evidence=ISO] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1306891 RGD:1359343
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
EMBL:CH473953 UniGene:Rn.203522 HOGENOM:HOG000089965 EMBL:BC086338
IPI:IPI00950131 SMR:Q5U212 STRING:Q5U212 Ensembl:ENSRNOT00000067093
InParanoid:Q5U212 Genevestigator:Q5U212 Uniprot:Q5U212
Length = 143
Score = 107 (42.7 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 36/115 (31%), Positives = 59/115 (51%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
+ FV+ ED A DAIR L + + ++VE ++ +KS A+ TK L
Sbjct: 37 YGFVHIEDKTAAEDAIRNLHH--YKLHGVNINVEASK---------NKSKAS---TK-LH 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
V N P T + +++ FE YG V+ I +++AFV E E+A +A+ D ++
Sbjct: 82 VGNISPTCTNQ-ELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTE 135
>ZFIN|ZDB-GENE-030131-7336 [details] [associations]
symbol:srsf5a "serine/arginine-rich splicing
factor 5a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-7336 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 OMA:FEDSRNH EMBL:FP103009
EMBL:AY398417 IPI:IPI00503585 RefSeq:NP_957161.1 UniGene:Dr.76029
STRING:Q6TGT9 Ensembl:ENSDART00000043312 GeneID:335396
KEGG:dre:335396 CTD:335396 InParanoid:Q6TGT9 OrthoDB:EOG461459
NextBio:20810825 Uniprot:Q6TGT9
Length = 259
Score = 109 (43.4 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 25/92 (27%), Positives = 46/92 (50%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ P RERD+++ F+ YG + + ++ F FV+F+ +A A+ + +L
Sbjct: 6 VFIGRLSP-HARERDVEKFFKGYGRIREINLKNGFGFVEFDDYRDADDAVYELNGKELCS 64
Query: 128 RVISVEYALKDDSE-----RDDRYDSPRRGGY 154
+++E+A R+ SPR GGY
Sbjct: 65 ERVTIEHARSRRGRGGGPGMGGRF-SPRFGGY 95
Score = 50 (22.7 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 178 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 225
R RS + R P + RSP+ G RS R NRSP+
Sbjct: 193 RSRSRSSSRSRSP--SRSRSPERGSKRSRSRSLSRTPEKKSTSNRSPS 238
Score = 48 (22.0 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 185 DRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 223
DR + RS R RSP R RSP+ G RS
Sbjct: 184 DRKRNRSRSRSRSRSSSRSRSP----SRSRSPERGSKRS 218
>UNIPROTKB|F1PTE0 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 KO:K12893 CTD:6431
OMA:KPRSSHR EMBL:AAEX03013949 RefSeq:XP_003639908.1
Ensembl:ENSCAFT00000014759 GeneID:403667 KEGG:cfa:403667
Uniprot:F1PTE0
Length = 344
Score = 115 (45.5 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 79 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138
RE+DI+R F YG +L + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 14 REKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGP 73
Query: 139 DSERDDRYDSPRRGGYG 155
+RD R GG G
Sbjct: 74 RRDRDGYSYGSRSGGGG 90
Score = 47 (21.6 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 178 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 224
R RSP + G + + RS R SP+P P R+ SP
Sbjct: 278 RSRSPK-ENGKGDIKSKSRSRSQSRSNSPLPA-----PPSKARSVSP 318
Score = 41 (19.5 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 176 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 227
Y RS + R +R S R RS R RS GR+RS + G
Sbjct: 191 YSGSRSRSRSRRRSRSRSRRSS--RSRSRSISKSRSRSRSRSKGRSRSRSKG 240
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 129 (50.5 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 43/146 (29%), Positives = 66/146 (45%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFG----Y-DRRRLSVEWARGERGRHRDGSKSMANQR 63
GF FV FE+ DAA A+ L+ F Y R + E R R+ K A++
Sbjct: 256 GFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKF 315
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKA 116
+ L+V N DP + E+ +K F P+G V ++ R+ FV F T EEAT+A
Sbjct: 316 QSSNLYVKNLDPSISDEK-LKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEA 374
Query: 117 LESTDRSKLVDRVISVEYALKDDSER 142
+ + + + V A + + R
Sbjct: 375 MSQLSGKMIESKPLYVAIAQRKEDRR 400
>UNIPROTKB|J9PA38 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 KO:K12893 CTD:6431 EMBL:AAEX03013949
GeneID:403667 KEGG:cfa:403667 RefSeq:XP_003639909.1
Ensembl:ENSCAFT00000044157 Uniprot:J9PA38
Length = 135
Score = 106 (42.4 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 79 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138
RE+DI+R F YG +L + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 14 REKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGP 73
Query: 139 DSERDD-RYDSPRRGG 153
+RD Y S G
Sbjct: 74 RRDRDGYSYGSRMTNG 89
>UNIPROTKB|G4MSA5 [details] [associations]
symbol:MGG_04482 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001231 RefSeq:XP_003710975.1 ProteinModelPortal:G4MSA5
EnsemblFungi:MGG_04482T0 GeneID:2678032 KEGG:mgr:MGG_04482
Uniprot:G4MSA5
Length = 206
Score = 120 (47.3 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 50/167 (29%), Positives = 68/167 (40%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALES 119
TL+V F TR RD+ FE YG ++ I R FAFV++E + +A +A
Sbjct: 7 TLYVTGFSH-GTRARDLAYEFERYGRLVRCDIPAPRSASSRLFAFVEYEDRRDADEAYHD 65
Query: 120 TDRSKLV-DRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGR 178
+L D ++ +E+A S R++S R G GR
Sbjct: 66 MHNKRLGRDDILKIEWARTPPSA-SWRFESGRDRDRGSDRGDRSRRSPRR--------GR 116
Query: 179 GRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 225
SP R P D RR D R R YDR D R+RSP+
Sbjct: 117 SPSPPRRRDYSPRKDDRRDRDRDRDRD----YDRDSRRDRDRSRSPD 159
>TAIR|locus:2195346 [details] [associations]
symbol:SR30 "Serine/Arginine-Rich Protein Splicing Factor
30" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0006376
"mRNA splice site selection" evidence=IMP] [GO:0048024 "regulation
of mRNA splicing, via spliceosome" evidence=TAS] [GO:0035061
"interchromatin granule" evidence=IDA] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
GO:GO:0016607 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GO:GO:0048024 GO:GO:0006376 HOGENOM:HOG000276234 KO:K12890
GO:GO:0035061 EMBL:AY150486 EMBL:AJ131214 IPI:IPI00520604
RefSeq:NP_172386.3 UniGene:At.419 SMR:Q9XFR5 IntAct:Q9XFR5
STRING:Q9XFR5 EnsemblPlants:AT1G09140.1 GeneID:837433
KEGG:ath:AT1G09140 TAIR:At1g09140 InParanoid:Q9XFR5 OMA:YKLRVEH
ProtClustDB:CLSN2918467 Genevestigator:Q9XFR5 Uniprot:Q9XFR5
Length = 268
Score = 123 (48.4 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 61/220 (27%), Positives = 87/220 (39%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER----GRHRDGSKSMANQRP 64
G+AFV FED RDA DAI G D + +D RL VE A G R R S A++ P
Sbjct: 46 GYAFVEFEDPRDADDAIYGRDG--YDFDGCRLRVEIAHGGRRFSPSVDRYSSSYSASRAP 103
Query: 65 TKT----LFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNFAFV----QFETQEEA 113
++ + V P + + D+K H G+V + R+ + V ++ + A
Sbjct: 104 SRRSDYRVLVTGLPPSASWQ-DLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYA 162
Query: 114 TKALESTD-RSKLVDRVISV-EYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXX 171
+ L++T+ R+ I V EY + S D S R R
Sbjct: 163 IRKLDATEFRNAFSSAYIRVREYESRSVSRSPDDSKSYRSRSRSRGPSCSYSSKSRSVSP 222
Query: 172 XXXDYGRGRSPAYDR--YNGPVYDQRRSPDHGRHRSPVPV 209
R R + R Y+ Q RS R RS PV
Sbjct: 223 ARSISPRSRPLSRSRSLYSSVSRSQSRSKSRSRSRSNSPV 262
>UNIPROTKB|G3MWK4 [details] [associations]
symbol:SRSF12 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000395 "mRNA 5'-splice site recognition" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000381 GO:GO:0000395 GeneTree:ENSGT00700000104403
OMA:XSRHRRF EMBL:DAAA02026452 Ensembl:ENSBTAT00000064733
Uniprot:G3MWK4
Length = 261
Score = 99 (39.9 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 29/83 (34%), Positives = 42/83 (50%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V I R FA+VQFE +A
Sbjct: 8 PNTSLFVRNVADA-TRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + +R + R I +++A D
Sbjct: 67 ALYNLNRKWVCGRQIEIQFAQGD 89
Score = 61 (26.5 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 197 SP-DHGRHRSPVPVYDRRRSPDYGRNR 222
SP DH R RSP R RS +GRNR
Sbjct: 105 SPSDHRRSRSPSQRRTRSRSSSWGRNR 131
>TAIR|locus:2114643 [details] [associations]
symbol:SR34a "Serine/Arginine-Rich Protein Splicing
Factor 34a" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276234 KO:K12890 OMA:DIREHEI EMBL:BT030067
IPI:IPI00539279 RefSeq:NP_001190041.1 RefSeq:NP_190512.3
UniGene:At.35607 ProteinModelPortal:A2RVS6 SMR:A2RVS6 IntAct:A2RVS6
STRING:A2RVS6 PaxDb:A2RVS6 PRIDE:A2RVS6 EnsemblPlants:AT3G49430.1
EnsemblPlants:AT3G49430.3 GeneID:824105 KEGG:ath:AT3G49430
TAIR:At3g49430 InParanoid:A2RVS6 PhylomeDB:A2RVS6
ProtClustDB:CLSN2918553 Genevestigator:A2RVS6 Uniprot:A2RVS6
Length = 300
Score = 88 (36.0 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 21/42 (50%), Positives = 25/42 (59%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51
+ FV FE RDA DAI+G D + D RL VE A G RG+
Sbjct: 47 YCFVEFEHSRDAEDAIKGRDG--YNLDGCRLRVELAHGGRGQ 86
Score = 76 (31.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 41/185 (22%), Positives = 67/185 (36%)
Query: 55 GSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQ 110
GS R ++ ++ P +D+K H G+V + R+ + V +
Sbjct: 110 GSARFGVSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNY 169
Query: 111 EE---ATKALESTD-RSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXX 166
++ A + L+ T+ R+ I V+ K +S R R SP R R
Sbjct: 170 DDMKYAIRKLDDTEFRNPWARGFIRVK---KYESSRS-RSRSPSRSR-SRSRSRSRSRGR 224
Query: 167 XXXXXXXXDYGRGRSPAYDRYNGP------VYDQRRSPDHGRHRSPVPVYDRRRSPDYGR 220
R +SP D P + RSP + +SP R +S R
Sbjct: 225 GRSHSRSRSLSRSKSPRKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRSR 284
Query: 221 NRSPN 225
+RSP+
Sbjct: 285 SRSPS 289
>UNIPROTKB|Q7ZTJ8 [details] [associations]
symbol:srsf10 "MGC53149 protein" species:8355 "Xenopus
laevis" [GO:0006376 "mRNA splice site selection" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006376 HOVERGEN:HBG107480 HSSP:P11940 CTD:10772 KO:K12900
EMBL:BC046695 RefSeq:NP_001079656.1 UniGene:Xl.6570
ProteinModelPortal:Q7ZTJ8 GeneID:379343 KEGG:xla:379343
Xenbase:XB-GENE-866220 Uniprot:Q7ZTJ8
Length = 258
Score = 122 (48.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 53/180 (29%), Positives = 70/180 (38%)
Query: 64 PTKTLFVINF-DPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEAT 114
P +LFV N D IR+ D++R F YG ++ V R R FA+VQFE +A
Sbjct: 8 PNSSLFVRNIADDIRSE--DLRREFGRYGPIVDVYVPLDYYNRRPRGFAYVQFEDVRDAE 65
Query: 115 KALESTDRSKLVDRVISVEYALKDDS--------ERDDRYDSPRRGG--YGRHXXXXXXX 164
AL + D+ + R I +++A D E Y S R Y R
Sbjct: 66 DALHNLDKKWICGRQIEIQFAQGDRKTPHQMKAKEGSSTYGSSRYDDDRYNRRSRSRSYE 125
Query: 165 XXXXXXXXXX-DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 223
+YGR SP R + R DHGR R RS R+RS
Sbjct: 126 RRRSRSRSIEQNYGRSNSPRGGRGAERLRRSRSRSDHGRFNRRNR--SRSRSGSNSRSRS 183
>UNIPROTKB|F1MXY9 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich-splicing factor 6"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 IPI:IPI00687852
UniGene:Bt.38355 OMA:KPRSSHR EMBL:DAAA02036693
ProteinModelPortal:F1MXY9 Ensembl:ENSBTAT00000011240 Uniprot:F1MXY9
Length = 345
Score = 115 (45.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 79 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138
RE+DI+R F YG +L + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 14 REKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGP 73
Query: 139 DSERDDRYDSPRRGGYG 155
+RD R GG G
Sbjct: 74 RRDRDGYSYGSRSGGGG 90
Score = 45 (20.9 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 178 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 224
R RSP + G + + RS R SP+P P R+ SP
Sbjct: 279 RSRSPK-ENGKGDIKSKSRSRSQSRSDSPLPA-----PPSKARSVSP 319
Score = 41 (19.5 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 176 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 227
Y RS + R +R S R RS R RS GR+RS + G
Sbjct: 191 YSGSRSRSRSRRRSRSRSRRSS--RSRSRSISKSRSRSRSRSKGRSRSRSKG 240
>TAIR|locus:2124799 [details] [associations]
symbol:RSZ22 "RS-containing zinc finger protein 22"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005737
EMBL:CP002687 GO:GO:0005730 GO:GO:0000166 GO:GO:0046872
GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 HSSP:P19339 GO:GO:0000398 EMBL:AL161579
EMBL:AL031004 HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AF033586 EMBL:AJ002378 EMBL:AY065387
EMBL:AY117206 EMBL:AY086525 IPI:IPI00542071 PIR:T05112 PIR:T52627
RefSeq:NP_001078474.1 RefSeq:NP_194886.1 UniGene:At.23104
ProteinModelPortal:O81126 SMR:O81126 IntAct:O81126 STRING:O81126
PRIDE:O81126 EnsemblPlants:AT4G31580.1 EnsemblPlants:AT4G31580.2
GeneID:829285 KEGG:ath:AT4G31580 TAIR:At4g31580 InParanoid:O81126
OMA:FARECRN PhylomeDB:O81126 Genevestigator:O81126 Uniprot:O81126
Length = 200
Score = 88 (36.0 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 22/42 (52%), Positives = 26/42 (61%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50
G+AF+ FED RDA DAIR LD G + R+ RGERG
Sbjct: 39 GYAFLDFEDPRDARDAIRALD----GKNGWRVEQSHNRGERG 76
Score = 69 (29.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 24/49 (48%), Positives = 27/49 (55%)
Query: 177 GRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 225
GR RS + R P Y RRSP +GR RS P R RSP R RSP+
Sbjct: 121 GRRRSKSRSR-TPPRY--RRSPSYGR-RSYSP---RARSPPPPRRRSPS 162
Score = 64 (27.6 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 21/46 (45%), Positives = 24/46 (52%)
Query: 180 RSPAYDRYNGPVYDQR-RSPDHGRHRSPVPVYDRRRSPDYGRNRSP 224
RSP+Y R + Y R RSP R RSP P R RS Y R+ P
Sbjct: 137 RSPSYGRRS---YSPRARSPPPPRRRSPSPPPARGRS--YSRSPPP 177
>UNIPROTKB|Q8WXF0 [details] [associations]
symbol:SRSF12 "Serine/arginine-rich splicing factor 12"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0000244 "assembly of spliceosomal tri-snRNP"
evidence=NAS] [GO:0051082 "unfolded protein binding" evidence=NAS]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0050733
"RS domain binding" evidence=NAS] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IDA] [GO:0016482 "cytoplasmic transport"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005654 GO:GO:0000166
EMBL:CH471051 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0000244
GO:GO:0003723 GO:GO:0016482 GO:GO:0048025 GO:GO:0000381
HOVERGEN:HBG107480 EMBL:AL353135 GO:GO:0000395 GO:GO:0050733
EMBL:AF449428 EMBL:AK314008 EMBL:BC021715 IPI:IPI00942141
RefSeq:NP_542781.3 UniGene:Hs.254414 ProteinModelPortal:Q8WXF0
SMR:Q8WXF0 IntAct:Q8WXF0 STRING:Q8WXF0 PhosphoSite:Q8WXF0
DMDM:47606193 PRIDE:Q8WXF0 DNASU:135295 Ensembl:ENST00000452027
GeneID:135295 KEGG:hsa:135295 UCSC:uc021zcq.1 CTD:135295
GeneCards:GC06M089805 HGNC:HGNC:21220 HPA:HPA049782
neXtProt:NX_Q8WXF0 PharmGKB:PA165618223 InParanoid:Q8WXF0
OMA:XSRHRRF GenomeRNAi:135295 NextBio:83483 ArrayExpress:Q8WXF0
Bgee:Q8WXF0 Genevestigator:Q8WXF0 GermOnline:ENSG00000154548
Uniprot:Q8WXF0
Length = 261
Score = 98 (39.6 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 28/83 (33%), Positives = 42/83 (50%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LF+ N TR D++R F YG ++ V I R FA+VQFE +A
Sbjct: 8 PNTSLFIRNVADA-TRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + +R + R I +++A D
Sbjct: 67 ALYNLNRKWVCGRQIEIQFAQGD 89
Score = 61 (26.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 197 SP-DHGRHRSPVPVYDRRRSPDYGRNR 222
SP DH R RSP R RS +GRNR
Sbjct: 105 SPSDHRRSRSPSQRRTRSRSSSWGRNR 131
>ZFIN|ZDB-GENE-040426-1094 [details] [associations]
symbol:tra2b "transformer 2 beta homolog
(Drosophila)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-1094
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q9V535
HOVERGEN:HBG107480 KO:K12897 CTD:6434 EMBL:BC049051 IPI:IPI00493400
RefSeq:NP_957491.1 UniGene:Dr.9221 ProteinModelPortal:Q7ZUG9
SMR:Q7ZUG9 STRING:Q7ZUG9 PRIDE:Q7ZUG9 GeneID:394172 KEGG:dre:394172
InParanoid:Q7ZUG9 NextBio:20815117 ArrayExpress:Q7ZUG9 Bgee:Q7ZUG9
Uniprot:Q7ZUG9
Length = 278
Score = 122 (48.0 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 59/201 (29%), Positives = 78/201 (38%)
Query: 35 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 94
Y RRR S + R G + AN P L V + T ERD++ F YG +
Sbjct: 94 YHRRRSSHSHSPMSNRRRHIGDR--ANPDPNCCLGVFGLS-LYTTERDLREVFSKYGPLS 150
Query: 95 HV--------RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY 146
V R R FA V FE +E++ +A E + +L R I V+Y++
Sbjct: 151 DVCIVYDQQSRRSRGFALVYFENREDSKEAKERANGMELDGRRIRVDYSITKGPH----- 205
Query: 147 DSPRRGGY-GRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRS 205
+P G Y GR Y RG YD Y + R + R RS
Sbjct: 206 -TPTPGIYMGRPTYGGGPSVSRRRDS----YDRGYERGYDSY------EDRDYHNNRRRS 254
Query: 206 PVPVYDRR--RSPDYGRNRSP 224
P P Y R RS R+ SP
Sbjct: 255 PSPYYSRGPYRSRSRSRSYSP 275
>UNIPROTKB|F1Q237 [details] [associations]
symbol:F1Q237 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104403 EMBL:AAEX03004837
Ensembl:ENSCAFT00000004966 OMA:DNTRSED Uniprot:F1Q237
Length = 261
Score = 121 (47.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 49/171 (28%), Positives = 70/171 (40%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATK 115
P +LFV N TR D+ R F YG ++ V R R FA+VQFE +A
Sbjct: 8 PNTSLFVRNVAD-NTRSEDLPREFGRYGPIVDVYVPLDFYTRHPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXD 175
AL + DR + R I +++A + D + + + GR+
Sbjct: 67 ALHNLDRKWICGRQIEIQFA-----QGDQKTPNQMKAKEGRNVYSSSRYDDYDR------ 115
Query: 176 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRS-PDYGRNRSPN 225
Y R RS +Y+R + RS D+ RS P R P R+ S N
Sbjct: 116 YRRSRSQSYERRRS----RSRSFDYNNRRSYSPRNSRPAGRPQRSRSHSDN 162
>CGD|CAL0004460 [details] [associations]
symbol:orf19.4748 species:5476 "Candida albicans" [GO:0030620
"U2 snRNA binding" evidence=IEA;ISO] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA;ISO] [GO:0005686 "U2 snRNP"
evidence=ISO] [GO:0071004 "U2-type prespliceosome" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004460 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AACQ01000001
GO:GO:0000398 GO:GO:0005686 GO:GO:0030620 PANTHER:PTHR10501
RefSeq:XP_723434.1 ProteinModelPortal:Q5AQ60 STRING:Q5AQ60
GeneID:3634924 KEGG:cal:CaO19.4748 Uniprot:Q5AQ60
Length = 131
Score = 104 (41.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 23/94 (24%), Positives = 48/94 (51%)
Query: 52 HRDGSKSM----ANQRPTKTLFVINFDPIRTRE---RDIKRHFEPYGNVLHVRIRRNFAF 104
H+D K + N +P++TL+V N + ++ ++ F +G+++ + ++ FAF
Sbjct: 14 HKDSKKKVKLDYVNLKPSQTLYVKNLNTKINKKILLHNLYLLFSAFGDIISINLQNGFAF 73
Query: 105 VQFETQEEATKALESTDRSKLVDRVISVEYALKD 138
+ F AT AL + D+ + + YA+K+
Sbjct: 74 IIFSNLNSATLALRNLKNQDFFDKPLVLNYAVKE 107
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 104 (41.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 34/94 (36%), Positives = 46/94 (48%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 128
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 129 VISVE---YALKDDSERDDRYDSPRR---GGYGR 156
+ V+ Y DS R PRR GGYGR
Sbjct: 84 ELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGR 117
>UNIPROTKB|Q5AQ60 [details] [associations]
symbol:MSL1 "Putative uncharacterized protein MSL1"
species:237561 "Candida albicans SC5314" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005686 "U2 snRNP"
evidence=ISO] [GO:0030620 "U2 snRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
PROSITE:PS50102 SMART:SM00360 CGD:CAL0004460 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AACQ01000001 GO:GO:0000398 GO:GO:0005686
GO:GO:0030620 PANTHER:PTHR10501 RefSeq:XP_723434.1
ProteinModelPortal:Q5AQ60 STRING:Q5AQ60 GeneID:3634924
KEGG:cal:CaO19.4748 Uniprot:Q5AQ60
Length = 131
Score = 104 (41.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 23/94 (24%), Positives = 48/94 (51%)
Query: 52 HRDGSKSM----ANQRPTKTLFVINFDPIRTRE---RDIKRHFEPYGNVLHVRIRRNFAF 104
H+D K + N +P++TL+V N + ++ ++ F +G+++ + ++ FAF
Sbjct: 14 HKDSKKKVKLDYVNLKPSQTLYVKNLNTKINKKILLHNLYLLFSAFGDIISINLQNGFAF 73
Query: 105 VQFETQEEATKALESTDRSKLVDRVISVEYALKD 138
+ F AT AL + D+ + + YA+K+
Sbjct: 74 IIFSNLNSATLALRNLKNQDFFDKPLVLNYAVKE 107
>UNIPROTKB|D6R9K7 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 HOGENOM:HOG000089965 IPI:IPI00965408
ProteinModelPortal:D6R9K7 SMR:D6R9K7 Ensembl:ENST00000506523
ArrayExpress:D6R9K7 Bgee:D6R9K7 Uniprot:D6R9K7
Length = 150
Score = 108 (43.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 36/119 (30%), Positives = 58/119 (48%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-L 68
+ FV+ ED A DAIR L + Y +++ + + SK N+ T T L
Sbjct: 37 YGFVHIEDKTAAEDAIRNLHH----YKLHGVNI---------NVEASK---NKSKTSTKL 80
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
V N P T ++++ FE YG V+ I +++AFV E E+A +A+ D ++ D
Sbjct: 81 HVGNISPTCTN-KELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQD 138
>UNIPROTKB|E7ETM7 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 EMBL:AL109936 HGNC:HGNC:5047
ChiTaRS:HNRNPR IPI:IPI00910614 ProteinModelPortal:E7ETM7 SMR:E7ETM7
Ensembl:ENST00000426846 UCSC:uc010odx.2 ArrayExpress:E7ETM7
Bgee:E7ETM7 Uniprot:E7ETM7
Length = 473
Score = 122 (48.0 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 40/137 (29%), Positives = 66/137 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + D + MA K L
Sbjct: 130 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWA--DPVEEPD-PEVMAK---VKVL 183
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AFV FE + A KA++ + ++
Sbjct: 184 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGE 242
Query: 129 VISVEYALKDDSERDDR 145
I + A D +R +R
Sbjct: 243 EIEIVLAKPPDKKRKER 259
Score = 39 (18.8 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 13/46 (28%), Positives = 16/46 (34%)
Query: 175 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGR 220
DY G Y Y+ + R G +P P R P GR
Sbjct: 321 DYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGR 366
>UNIPROTKB|Q3MHR5 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
Uniprot:Q3MHR5
Length = 221
Score = 119 (46.9 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 48/169 (28%), Positives = 66/169 (39%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 128
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 129 VISVE---YALKDDSERDDRYDSPRR---GGYGRHXXX-------XXXXXXXXXXXXXXD 175
+ V+ Y DS R PRR GGYGR
Sbjct: 84 ELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSR 143
Query: 176 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 224
Y R +S + R + RS + +S R RS R+RSP
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
>UNIPROTKB|E2RDB2 [details] [associations]
symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
Length = 221
Score = 119 (46.9 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 48/169 (28%), Positives = 66/169 (39%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 128
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 129 VISVE---YALKDDSERDDRYDSPRR---GGYGRHXXX-------XXXXXXXXXXXXXXD 175
+ V+ Y DS R PRR GGYGR
Sbjct: 84 ELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRTRSPRRRRRSRSRSRSRSRSRSRSR 143
Query: 176 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 224
Y R +S + R + RS + +S R RS R+RSP
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
>UNIPROTKB|Q01130 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=NAS] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
Ensembl:ENST00000359995 Ensembl:ENST00000392485
Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
Length = 221
Score = 119 (46.9 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 48/169 (28%), Positives = 66/169 (39%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 128
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 129 VISVE---YALKDDSERDDRYDSPRR---GGYGRHXXX-------XXXXXXXXXXXXXXD 175
+ V+ Y DS R PRR GGYGR
Sbjct: 84 ELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSR 143
Query: 176 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 224
Y R +S + R + RS + +S R RS R+RSP
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
>UNIPROTKB|Q06A98 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
Length = 221
Score = 119 (46.9 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 48/169 (28%), Positives = 66/169 (39%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 128
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 129 VISVE---YALKDDSERDDRYDSPRR---GGYGRHXXX-------XXXXXXXXXXXXXXD 175
+ V+ Y DS R PRR GGYGR
Sbjct: 84 ELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSR 143
Query: 176 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 224
Y R +S + R + RS + +S R RS R+RSP
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
>MGI|MGI:98284 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
GermOnline:ENSMUSG00000034120 Uniprot:Q62093
Length = 221
Score = 119 (46.9 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 48/169 (28%), Positives = 66/169 (39%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 128
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 129 VISVE---YALKDDSERDDRYDSPRR---GGYGRHXXX-------XXXXXXXXXXXXXXD 175
+ V+ Y DS R PRR GGYGR
Sbjct: 84 ELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSR 143
Query: 176 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 224
Y R +S + R + RS + +S R RS R+RSP
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
>RGD|1359422 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 119 (46.9 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 48/169 (28%), Positives = 66/169 (39%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 128
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 129 VISVE---YALKDDSERDDRYDSPRR---GGYGRHXXX-------XXXXXXXXXXXXXXD 175
+ V+ Y DS R PRR GGYGR
Sbjct: 84 ELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSR 143
Query: 176 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 224
Y R +S + R + RS + +S R RS R+RSP
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
>UNIPROTKB|Q6PDU1 [details] [associations]
symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 119 (46.9 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 48/169 (28%), Positives = 66/169 (39%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 128
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 129 VISVE---YALKDDSERDDRYDSPRR---GGYGRHXXX-------XXXXXXXXXXXXXXD 175
+ V+ Y DS R PRR GGYGR
Sbjct: 84 ELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSR 143
Query: 176 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 224
Y R +S + R + RS + +S R RS R+RSP
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
>UNIPROTKB|Q6K9C3 [details] [associations]
symbol:RSZ23 "Serine/arginine-rich splicing factor RSZ23"
species:39947 "Oryza sativa Japonica Group" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IDA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP008208
GO:GO:0000398 HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AP004063 EMBL:AK060088 EMBL:AK099572
EMBL:AK104726 RefSeq:NP_001047400.1 UniGene:Os.12017
ProteinModelPortal:Q6K9C3 STRING:Q6K9C3
EnsemblPlants:LOC_Os02g39720.3 EnsemblPlants:LOC_Os02g39720.4
EnsemblPlants:LOC_Os02g39720.6 GeneID:4329951 KEGG:osa:4329951
Gramene:Q6K9C3 Uniprot:Q6K9C3
Length = 200
Score = 97 (39.2 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 26/51 (50%), Positives = 30/51 (58%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSM 59
GFAF+ F+D RDA DAIR LD G+ R LS + G RGR R G M
Sbjct: 39 GFAFIDFDDRRDAEDAIRDLDG-KNGW-RVELSTKAGSG-RGRDRSGGSDM 86
Score = 56 (24.8 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 22/52 (42%), Positives = 24/52 (46%)
Query: 178 RGRSPAYDRYNGPVYDQR---RSPDHGRH-RSPVPVYDRR--RSPDYGRNRS 223
R RSP Y R P Y + RSP + RSP P R RSP R RS
Sbjct: 131 RSRSPRYRR--SPSYGRSPRDRSPKRRSYSRSPPPARARSYSRSPPPPRERS 180
>UNIPROTKB|Q06A99 [details] [associations]
symbol:SRSF4 "SFRS4" species:9823 "Sus scrofa" [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 CTD:6429 OMA:REHAKSE
OrthoDB:EOG41C6X9 EMBL:FP236541 EMBL:DQ972965 RefSeq:NP_001070684.1
UniGene:Ssc.11128 Ensembl:ENSSSCT00000003983 GeneID:768101
KEGG:ssc:768101 Uniprot:Q06A99
Length = 491
Score = 119 (46.9 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136
+ RERD++R F+ YG +L V ++ + FV+F+ +A A+ + L + VE+A
Sbjct: 12 QARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHAR 71
Query: 137 KDDSERDDRYDSPRRG-GYGR 156
RD Y S R G GY R
Sbjct: 72 --GPRRDGSYGSGRSGYGYRR 90
Score = 114 (45.2 bits), Expect = 0.00035, P = 0.00035
Identities = 60/235 (25%), Positives = 94/235 (40%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDR--RRLSVEWARGER--GRHRDGSKSMANQR- 63
G+ FV F+D RDA DA+ L+ G D R+ VE ARG R G + G +R
Sbjct: 36 GYGFVEFDDLRDADDAVYELN----GKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRS 91
Query: 64 -------PTKTLFVINFDPIRTR--ERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQE 111
PT+T + + + + +R +D+K + G V + + R+N ++F +
Sbjct: 92 GRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYS 151
Query: 112 EATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXX 171
+ +ALE D +++ R I + K S R Y R R
Sbjct: 152 DMKRALEKLDGTEVNGRKIRLVED-KPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGS 210
Query: 172 XXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRR---RSPDYGRNRS 223
+ + RS + R + RS R RS R RS D R++S
Sbjct: 211 SKSSHSKSRSRS--RSGSRSRSKSRSRSQSRSRSKKEKSRSRSHSRSADKRRSKS 263
Score = 43 (20.2 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 178 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRR--RSPDYGRNRS 223
R RS + + N P + RS + RS R RSP R+RS
Sbjct: 440 RSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSRS 487
>UNIPROTKB|A7MB38 [details] [associations]
symbol:SFRS4 "SFRS4 protein" species:9913 "Bos taurus"
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 CTD:6429 OMA:REHAKSE
OrthoDB:EOG41C6X9 EMBL:DAAA02006322 EMBL:BC151318 IPI:IPI00692721
RefSeq:NP_001094701.1 UniGene:Bt.28464 STRING:A7MB38
Ensembl:ENSBTAT00000037984 GeneID:614310 KEGG:bta:614310
InParanoid:A7MB38 NextBio:20899050 Uniprot:A7MB38
Length = 493
Score = 123 (48.4 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 59/232 (25%), Positives = 95/232 (40%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDR--RRLSVEWARGER--GRHRDGSKSMANQR- 63
G+ FV F+D RDA DA+ L+ G D R+ VE ARG R G + G +R
Sbjct: 36 GYGFVEFDDLRDADDAVYELN----GKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRS 91
Query: 64 -------PTKTLFVINFDPIRTR--ERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQE 111
PT+T + + + + +R +D+K + G V + + R+N ++F +
Sbjct: 92 GRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYS 151
Query: 112 EATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXX 171
+ +ALE D +++ R I + K S R Y R R
Sbjct: 152 DMKRALEKLDGTEVNGRKIRLVED-KPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGS 210
Query: 172 XXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 223
+ + RS + R + RS R RS ++ RSP ++RS
Sbjct: 211 SKSSHSKSRSRS--RSGSRSRSKSRSRSQSRSRSKK---EKSRSPSKDKSRS 257
Score = 119 (46.9 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136
+ RERD++R F+ YG +L V ++ + FV+F+ +A A+ + L + VE+A
Sbjct: 12 QARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHAR 71
Query: 137 KDDSERDDRYDSPRRG-GYGR 156
RD Y S R G GY R
Sbjct: 72 --GPRRDGSYGSGRSGYGYRR 90
Score = 43 (20.2 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 178 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRR--RSPDYGRNRS 223
R RS + + N P + RS + RS R RSP R+RS
Sbjct: 442 RSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSGSRSPSRSRSRS 489
>UNIPROTKB|Q08170 [details] [associations]
symbol:SRSF4 "Serine/arginine-rich splicing factor 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 EMBL:AL357500 GO:GO:0016607
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0048025 eggNOG:COG0724
GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78 HOVERGEN:HBG002295
EMBL:AL590729 KO:K12893 EMBL:L14076 EMBL:BT007415 EMBL:BC002781
EMBL:AC004236 IPI:IPI00000015 PIR:A48133 RefSeq:NP_005617.2
UniGene:Hs.469970 ProteinModelPortal:Q08170 SMR:Q08170
IntAct:Q08170 MINT:MINT-1410521 STRING:Q08170 PhosphoSite:Q08170
DMDM:20981726 PaxDb:Q08170 PeptideAtlas:Q08170 PRIDE:Q08170
DNASU:6429 Ensembl:ENST00000373795 GeneID:6429 KEGG:hsa:6429
UCSC:uc001bro.3 CTD:6429 GeneCards:GC01M029474 H-InvDB:HIX0160019
HGNC:HGNC:10786 HPA:HPA050975 MIM:601940 neXtProt:NX_Q08170
PharmGKB:PA35702 InParanoid:Q08170 OMA:REHAKSE OrthoDB:EOG41C6X9
PhylomeDB:Q08170 ChiTaRS:SRSF4 GenomeRNAi:6429 NextBio:24969
ArrayExpress:Q08170 Bgee:Q08170 CleanEx:HS_SFRS4
Genevestigator:Q08170 GermOnline:ENSG00000116350 Uniprot:Q08170
Length = 494
Score = 122 (48.0 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 59/232 (25%), Positives = 95/232 (40%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDR--RRLSVEWARGER--GRHRDGSKSMANQR- 63
G+ FV F+D RDA DA+ L+ G D R+ VE ARG R G + G +R
Sbjct: 36 GYGFVEFDDLRDADDAVYELN----GKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRS 91
Query: 64 -------PTKTLFVINFDPIRTR--ERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQE 111
PT+T + + + + +R +D+K + G V + + R+N ++F +
Sbjct: 92 GRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYS 151
Query: 112 EATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXX 171
+ +ALE D +++ R I + K S R Y R R
Sbjct: 152 DMKRALEKLDGTEVNGRKIRLVED-KPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGS 210
Query: 172 XXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 223
+ + RS + R + RS R RS ++ RSP ++RS
Sbjct: 211 SKSSHSKSRSRS--RSGSRSRSKSRSRSQSRSRSKK---EKSRSPSKEKSRS 257
Score = 119 (46.9 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136
+ RERD++R F+ YG +L V ++ + FV+F+ +A A+ + L + VE+A
Sbjct: 12 QARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHAR 71
Query: 137 KDDSERDDRYDSPRRG-GYGR 156
RD Y S R G GY R
Sbjct: 72 --GPRRDGSYGSGRSGYGYRR 90
Score = 43 (20.2 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 178 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRR--RSPDYGRNRS 223
R RS + + N P + RS + RS R RSP R+RS
Sbjct: 443 RSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSRS 490
>POMBASE|SPBC11C11.08 [details] [associations]
symbol:srp1 "SR family protein, human SRFS2 ortholog
Srp1" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=ISM] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=TAS] [GO:0046982 "protein
heterodimerization activity" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC11C11.08 GO:GO:0005634 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GenomeReviews:CU329671_GR GO:GO:0003723
GO:GO:0045292 EMBL:U66833 PIR:T48696 RefSeq:NP_596398.1
ProteinModelPortal:Q10193 STRING:Q10193 PRIDE:Q10193
EnsemblFungi:SPBC11C11.08.1 GeneID:2539818 KEGG:spo:SPBC11C11.08
eggNOG:NOG77895 OMA:DCYRYSK OrthoDB:EOG473T21 NextBio:20800967
Uniprot:Q10193
Length = 275
Score = 121 (47.7 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 60/182 (32%), Positives = 79/182 (43%)
Query: 61 NQRPTKTLFVINF-DPIRTRERDIKRHFEPYGNVLH-------VRIRRNFAFVQFETQEE 112
++R +TL+V F D +R RE + FEP+G ++ R R FAFV++E +
Sbjct: 2 SRRSLRTLYVTGFRDGMRARE--LAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRD 59
Query: 113 ATKALESTDRSKLVDR---VISVEYALKD--DSERDDRYDSPRRGG--YGRHXXXXXXXX 165
A A +L +R V+ VE+A + R RGG +G
Sbjct: 60 AEDAYYEVHGRRL-ERGGGVLRVEWAKQPPPSGPGSKRGGRRERGGRVHGDSGRLRSRSP 118
Query: 166 XXXXXXXXXDYGRGRSPAYDRYNGPVYDQR-RSPDHGRHRSPVPVYDRRRSPDYGRN-RS 223
Y RS R P Y R RSPD GR RSP YDRR SP RN RS
Sbjct: 119 SPHEARSRSPYNDERSDR--RSMSPRYRSRSRSPD-GRSRSPD--YDRR-SPK--RNHRS 170
Query: 224 PN 225
P+
Sbjct: 171 PS 172
>UNIPROTKB|E1BB24 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:DAAA02044105 EMBL:DAAA02044106
IPI:IPI00711895 RefSeq:NP_001179648.1 UniGene:Bt.52151
ProteinModelPortal:E1BB24 Ensembl:ENSBTAT00000002223 GeneID:532175
KEGG:bta:532175 NextBio:20875624 Uniprot:E1BB24
Length = 533
Score = 125 (49.1 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 48/140 (34%), Positives = 69/140 (49%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L F + V+WA E+ D ++M QR K L
Sbjct: 185 GFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEK--EVD-EETM--QR-VKVL 238
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK F + G+V V+ R++AFV F +E+A A+ S K +
Sbjct: 239 YVRNL-MISTTEETIKAEFNKFKPGSVERVKKLRDYAFVHFFNREDAVAAM-SVMNGKCI 296
Query: 127 DRVISVEYALKDDSERDDRY 146
D S+E L +++ +
Sbjct: 297 DGA-SIEVTLAKPVNKENTW 315
>UNIPROTKB|Q3B7L6 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich splicing factor 6"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 KO:K12893 HSSP:Q01085
OrthoDB:EOG41C6X9 EMBL:BC107553 IPI:IPI00687852
RefSeq:NP_001030349.1 UniGene:Bt.38355 ProteinModelPortal:Q3B7L6
STRING:Q3B7L6 PRIDE:Q3B7L6 GeneID:507828 KEGG:bta:507828 CTD:6431
InParanoid:Q3B7L6 NextBio:20868237 Uniprot:Q3B7L6
Length = 345
Score = 113 (44.8 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 79 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138
RE+DI+R F YG +L + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 14 REKDIQRFFSGYGRLLGIDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGP 73
Query: 139 DSERDDRYDSPRRGGYG 155
+RD R GG G
Sbjct: 74 RRDRDGYSYGSRSGGGG 90
Score = 45 (20.9 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 178 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 224
R RSP + G + + RS R SP+P P R+ SP
Sbjct: 279 RSRSPK-ENGKGDIKSKSRSRSQSRSDSPLPA-----PPSKARSVSP 319
Score = 41 (19.5 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 176 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 227
Y RS + R +R S R RS R RS GR+RS + G
Sbjct: 191 YSGSRSRSRSRRRSRSRSRRSS--RSRSRSISKSRSRSRSRSKGRSRSRSKG 240
>UNIPROTKB|F1S4B2 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
OMA:RKSYTRS Ensembl:ENSSSCT00000002574 Uniprot:F1S4B2
Length = 263
Score = 120 (47.3 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 62/229 (27%), Positives = 82/229 (35%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE------RGRHRD--GSKSMA 60
GF FV FED RDA DA+ LD +R +++E AR RGR+ D S+
Sbjct: 38 GFGFVEFEDPRDADDAVYELDGKELCSER--VTIEHARARSRGGRGRGRYSDRFSSRRPR 95
Query: 61 NQR----PTKT---LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR---NFAFVQFETQ 110
N R P +T L V N R +D+K G V R N V+F +
Sbjct: 96 NDRRNAPPVRTENRLIVENLSS-RVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASY 154
Query: 111 EEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXX 170
+ A+E ++ R I + K S R S R
Sbjct: 155 GDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRRSKSYSR 214
Query: 171 XXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYG 219
R +S + R P Q+R R RS R RS D G
Sbjct: 215 SRSRSRSRSKSRSVSRSPVPEKSQKRGSS-SRSRSRSRSRSRSRSVDSG 262
Score = 114 (45.2 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEYA 135
+++E+A
Sbjct: 65 ERVTIEHA 72
Score = 39 (18.8 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 192 YDQRRSPDHGRHRSPVPVYDR---RRSPDYGRNRS 223
+ + RS R RS R RRS Y R+RS
Sbjct: 183 HSRSRSRSRSRTRSSSRSRSRSRSRRSKSYSRSRS 217
>FB|FBgn0004587 [details] [associations]
symbol:B52 "B52" species:7227 "Drosophila melanogaster"
[GO:0035327 "transcriptionally active chromatin" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IC;IDA;NAS] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0035062 "omega speckle" evidence=IDA] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0007067 GO:GO:0000166 GO:GO:0016607 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0005700 GO:GO:0071011 GO:GO:0071013
GO:GO:0035327 eggNOG:COG0724 GO:GO:0006376 GO:GO:0000381 KO:K12893
EMBL:X58720 EMBL:X62599 EMBL:AY069302 EMBL:AY113327 EMBL:BT001417
EMBL:BT001482 EMBL:BT001495 EMBL:BT001750 EMBL:BT003286
EMBL:BT004500 EMBL:BT125783 EMBL:S51722 PIR:A37282 PIR:A40459
PIR:H48110 RefSeq:NP_001014619.2 RefSeq:NP_001163603.1
RefSeq:NP_001163604.1 RefSeq:NP_001163605.1 RefSeq:NP_788665.1
RefSeq:NP_788666.1 RefSeq:NP_788667.2 RefSeq:NP_788668.1
RefSeq:NP_788669.1 RefSeq:NP_788670.1 RefSeq:NP_788671.2
UniGene:Dm.2188 ProteinModelPortal:P26686 SMR:P26686 IntAct:P26686
MINT:MINT-934286 STRING:P26686 PaxDb:P26686 PRIDE:P26686
GeneID:41670 KEGG:dme:Dmel_CG10851 CTD:41670 FlyBase:FBgn0004587
InParanoid:P26686 OMA:VIEFRSH OrthoDB:EOG4NK9C3 ChiTaRS:SRSF6
GenomeRNAi:41670 NextBio:824942 Bgee:P26686 GermOnline:CG10851
Uniprot:P26686
Length = 376
Score = 122 (48.0 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 31/88 (35%), Positives = 45/88 (51%)
Query: 75 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134
P RERD++R F+ YG + I+ + FV+FE +A A+ + +L+ + VE
Sbjct: 12 PYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEP 71
Query: 135 A--LKDDSERD---DRYDSPRRGGYGRH 157
A S RD DRY R GG GR+
Sbjct: 72 ARGTARGSNRDRYDDRYGGRRGGGGGRY 99
>UNIPROTKB|F1NRH9 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IEA] [GO:0060048 "cardiac muscle contraction"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0000395
GeneTree:ENSGT00700000104103 EMBL:AADN02025726 IPI:IPI00819428
Ensembl:ENSGALT00000008863 OMA:EVRQEDI Uniprot:F1NRH9
Length = 192
Score = 102 (41.0 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 39/144 (27%), Positives = 59/144 (40%)
Query: 19 RDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRP----------TKTL 68
RDA DA+ G D + YD RL VE+ R RG R G P ++
Sbjct: 1 RDAEDAVYGRDG--YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYR 58
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVD 127
+++ P +D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 59 VIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRS 118
Query: 128 RVISVEYA-LKDDSERDDRYDSPR 150
Y +K D R Y R
Sbjct: 119 HEGETAYIRVKVDGPRSPSYGRSR 142
Score = 46 (21.3 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 211 DRRRSPDYGRNRS 223
D RSP YGR+RS
Sbjct: 131 DGPRSPSYGRSRS 143
Score = 43 (20.2 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 193 DQRRSPDHGRHRSPVPV 209
D RSP +GR RS V V
Sbjct: 131 DGPRSPSYGRSRSRVVV 147
>UNIPROTKB|Q2L7G6 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003676 GO:GO:0030529 EMBL:AL109936 UniGene:Hs.373763
HGNC:HGNC:5047 ChiTaRS:HNRNPR EMBL:DQ351905 IPI:IPI00856038
SMR:Q2L7G6 STRING:Q2L7G6 Ensembl:ENST00000427764 UCSC:uc010odw.2
Uniprot:Q2L7G6
Length = 595
Score = 122 (48.0 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 40/137 (29%), Positives = 66/137 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + D + MA K L
Sbjct: 252 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWA--DPVEEPD-PEVMAK---VKVL 305
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AFV FE + A KA++ + ++
Sbjct: 306 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGE 364
Query: 129 VISVEYALKDDSERDDR 145
I + A D +R +R
Sbjct: 365 EIEIVLAKPPDKKRKER 381
Score = 39 (18.8 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 13/46 (28%), Positives = 16/46 (34%)
Query: 175 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGR 220
DY G Y Y+ + R G +P P R P GR
Sbjct: 443 DYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGR 488
>DICTYBASE|DDB_G0280393 [details] [associations]
symbol:DDB_G0280393 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0280393 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AAFI02000035 Gene3D:4.10.60.10 SUPFAM:SSF57756
ProtClustDB:CLSZ2846809 RefSeq:XP_641373.1
ProteinModelPortal:Q54VI2 PRIDE:Q54VI2 EnsemblProtists:DDB0233308
GeneID:8622507 KEGG:ddi:DDB_G0280393 eggNOG:NOG242322
InParanoid:Q54VI2 OMA:PRERHTE Uniprot:Q54VI2
Length = 412
Score = 103 (41.3 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 42/143 (29%), Positives = 63/143 (44%)
Query: 18 DRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGS---KSMA-NQRPTKTLFVINF 73
DRD D R D YDR S E R R R R GS KS+ + + ++V
Sbjct: 128 DRDRHDRDRSRDR----YDRHDRSRERNRS-RTRSRSGSRRRKSIDFSLLAERRVYVGRI 182
Query: 74 DPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 133
TRE ++ F +G VL ++ +AFV+F+ ++ A A+E S + I VE
Sbjct: 183 SNKTTRE-SLEDSFLKFGKVLSCDVKNGYAFVEFDNEKSARDAIEEMHDSIVDGEKILVE 241
Query: 134 YALKDDSERDDRYDSPRRGGYGR 156
+ D+ + RG + R
Sbjct: 242 KSHSGKKHPDECFICRGRGHWAR 264
Score = 58 (25.5 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 22/48 (45%), Positives = 24/48 (50%)
Query: 178 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDY--GRNRS 223
R RSP Y R NG + RS D R RS DRR D GR+RS
Sbjct: 346 RSRSPRY-RSNGGNRYRDRSRDRSRDRSG----DRRGGSDRRSGRDRS 388
Score = 50 (22.7 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 186 RYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRN 221
RYN P Y+ + ++GR+R R RSP Y N
Sbjct: 322 RYN-P-YNNNNNNNNGRNRDRSYSRSRSRSPRYRSN 355
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 124 (48.7 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 38/146 (26%), Positives = 65/146 (44%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG-----RHRDGSKSMANQR 63
GF FV FE+ DAA A+ L+ F + + ER + K A++
Sbjct: 265 GFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKS 324
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKA 116
L+V N D T ++ ++ HF P+G + ++ R+ FV F T EEAT+A
Sbjct: 325 QGSNLYVKNLDESVTDDK-LREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRA 383
Query: 117 LESTDRSKLVDRVISVEYALKDDSER 142
+ + +V + + V A + + +
Sbjct: 384 ITEMNGKMIVTKPLYVALAQRKEDRK 409
>RGD|631348 [details] [associations]
symbol:Hnrnpr "heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:631348 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0030529 HSSP:O08583
IPI:IPI00194562 UniGene:Rn.195396 EMBL:AY184814
ProteinModelPortal:Q811S1 SMR:Q811S1 STRING:Q811S1 PRIDE:Q811S1
UCSC:RGD:631348 InParanoid:Q811S1 Genevestigator:Q811S1
Uniprot:Q811S1
Length = 632
Score = 122 (48.0 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 40/137 (29%), Positives = 66/137 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + D + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWA--DPVEEPD-PEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AFV FE + A KA++ + ++
Sbjct: 344 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGE 402
Query: 129 VISVEYALKDDSERDDR 145
I + A D +R +R
Sbjct: 403 EIEIVLAKPPDKKRKER 419
Score = 39 (18.8 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 13/46 (28%), Positives = 16/46 (34%)
Query: 175 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGR 220
DY G Y Y+ + R G +P P R P GR
Sbjct: 480 DYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGR 525
>UNIPROTKB|Q566E4 [details] [associations]
symbol:Hnrnpr "Heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:631348 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0071013 OrthoDB:EOG4FN4HM
HOGENOM:HOG000186082 CTD:10236 KO:K13161 EMBL:BC093598
IPI:IPI00194562 RefSeq:NP_783193.2 UniGene:Rn.195396 SMR:Q566E4
STRING:Q566E4 Ensembl:ENSRNOT00000016001 GeneID:319110
KEGG:rno:319110 InParanoid:Q566E4 NextBio:672099
Genevestigator:Q566E4 Uniprot:Q566E4
Length = 632
Score = 122 (48.0 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 40/137 (29%), Positives = 66/137 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + D + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWA--DPVEEPD-PEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AFV FE + A KA++ + ++
Sbjct: 344 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGE 402
Query: 129 VISVEYALKDDSERDDR 145
I + A D +R +R
Sbjct: 403 EIEIVLAKPPDKKRKER 419
Score = 39 (18.8 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 13/46 (28%), Positives = 16/46 (34%)
Query: 175 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGR 220
DY G Y Y+ + R G +P P R P GR
Sbjct: 480 DYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGR 525
>UNIPROTKB|A3KMV6 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0003676 GO:GO:0071013
OrthoDB:EOG4FN4HM HOGENOM:HOG000186082 CTD:10236 KO:K13161
OMA:YYPPPRM EMBL:DAAA02006438 EMBL:BC133299 IPI:IPI00704335
RefSeq:NP_001076077.1 UniGene:Bt.3687 SMR:A3KMV6 STRING:A3KMV6
Ensembl:ENSBTAT00000022054 GeneID:512479 KEGG:bta:512479
InParanoid:A3KMV6 NextBio:20870409 Uniprot:A3KMV6
Length = 633
Score = 122 (48.0 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 40/137 (29%), Positives = 66/137 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + D + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWA--DPVEEPD-PEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AFV FE + A KA++ + ++
Sbjct: 344 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGE 402
Query: 129 VISVEYALKDDSERDDR 145
I + A D +R +R
Sbjct: 403 EIEIVLAKPPDKKRKER 419
Score = 39 (18.8 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 13/46 (28%), Positives = 16/46 (34%)
Query: 175 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGR 220
DY G Y Y+ + R G +P P R P GR
Sbjct: 481 DYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGR 526
>UNIPROTKB|E2RE36 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 CTD:10236 KO:K13161 OMA:YYPPPRM EMBL:AAEX03001757
RefSeq:XP_852945.1 ProteinModelPortal:E2RE36
Ensembl:ENSCAFT00000021145 GeneID:478192 KEGG:cfa:478192
Uniprot:E2RE36
Length = 633
Score = 122 (48.0 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 40/137 (29%), Positives = 66/137 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + D + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWA--DPVEEPD-PEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AFV FE + A KA++ + ++
Sbjct: 344 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGE 402
Query: 129 VISVEYALKDDSERDDR 145
I + A D +R +R
Sbjct: 403 EIEIVLAKPPDKKRKER 419
Score = 39 (18.8 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 13/46 (28%), Positives = 16/46 (34%)
Query: 175 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGR 220
DY G Y Y+ + R G +P P R P GR
Sbjct: 481 DYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGR 526
>UNIPROTKB|O43390 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0006397 "mRNA processing" evidence=NAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Reactome:REACT_1675
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0000398 GO:GO:0071013 HOGENOM:HOG000186082
EMBL:AF000364 EMBL:AL109936 EMBL:BC001449 IPI:IPI00012074
IPI:IPI00941649 PIR:T02673 RefSeq:NP_001095867.1
RefSeq:NP_001095868.1 RefSeq:NP_005817.1 UniGene:Hs.373763 PDB:2DK2
PDBsum:2DK2 ProteinModelPortal:O43390 SMR:O43390 IntAct:O43390
MINT:MINT-2796101 STRING:O43390 PhosphoSite:O43390 PaxDb:O43390
PeptideAtlas:O43390 PRIDE:O43390 DNASU:10236
Ensembl:ENST00000302271 Ensembl:ENST00000374612
Ensembl:ENST00000374616 GeneID:10236 KEGG:hsa:10236 UCSC:uc001bgp.4
UCSC:uc001bgr.4 CTD:10236 GeneCards:GC01M023630 HGNC:HGNC:5047
HPA:CAB011687 HPA:HPA026092 MIM:607201 neXtProt:NX_O43390
PharmGKB:PA162391459 KO:K13161 OMA:YYPPPRM PhylomeDB:O43390
ChiTaRS:HNRNPR EvolutionaryTrace:O43390 GenomeRNAi:10236
NextBio:38770 PMAP-CutDB:O43390 ArrayExpress:O43390 Bgee:O43390
CleanEx:HS_HNRNPR Genevestigator:O43390 GermOnline:ENSG00000125944
Uniprot:O43390
Length = 633
Score = 122 (48.0 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 40/137 (29%), Positives = 66/137 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + D + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWA--DPVEEPD-PEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AFV FE + A KA++ + ++
Sbjct: 344 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGE 402
Query: 129 VISVEYALKDDSERDDR 145
I + A D +R +R
Sbjct: 403 EIEIVLAKPPDKKRKER 419
Score = 39 (18.8 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 13/46 (28%), Positives = 16/46 (34%)
Query: 175 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGR 220
DY G Y Y+ + R G +P P R P GR
Sbjct: 481 DYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGR 526
>ASPGD|ASPL0000075947 [details] [associations]
symbol:AN4978 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
OMA:ANQPLEV OrthoDB:EOG4BP4N7 HOGENOM:HOG000276234
RefSeq:XP_662582.1 ProteinModelPortal:Q5B3A2 STRING:Q5B3A2
EnsemblFungi:CADANIAT00005417 GeneID:2872778 KEGG:ani:AN4978.2
Uniprot:Q5B3A2
Length = 296
Score = 119 (46.9 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 69/232 (29%), Positives = 92/232 (39%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHR-DGSKSMAN-QRPTK 66
GF F+ +ED DA D + F +R L+V++ARG R + N RP +
Sbjct: 43 GFGFIEYEDAMDARDIVPAFHGSDFKGER--LTVQFARGPRRKENFPVPTDRPNLPRPRR 100
Query: 67 TLF--VINFDPIRTRERDIKRHFEPYG-NVLHVRIRRN--FAFVQFETQEEATKALESTD 121
T+F +I+ P T +D+K G +V++ R V+FET + A+E D
Sbjct: 101 TIFRMIISGLP-ETSWQDLKDFARQSGLDVVYSETGREPGRGIVEFETANDLKTAVEKLD 159
Query: 122 -RSKLVDRVISV-EYALKDDSERDDRYDS--PRRGGYGRHXXXXXXXXXXXXXXXXXDYG 177
R RV V + DD D Y S PRRG Y Y
Sbjct: 160 GREFKGTRVTCVPDIQPYDDRPYRDPYRSRSPRRG-YPPMDEYDRRYSVPRGYSPRSHY- 217
Query: 178 RGRSPAYDR--YNGPVYDQRRSPDHGRHRSPVPVYDRRRSPD-YGRNRSPNF 226
R RSP R Y G Y +R P P P RR D YG P +
Sbjct: 218 RERSPIPMRRDYYGDGYGRRTPPRPRMEDYPPP---RRPYEDPYGPPPPPRY 266
>UNIPROTKB|B3KWU8 [details] [associations]
symbol:RBM46 "Putative uncharacterized protein MGC27016"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003676 EMBL:CH471056 CTD:166863 RefSeq:NP_659416.1
UniGene:Hs.133095 GeneID:166863 KEGG:hsa:166863 HGNC:HGNC:28401
PharmGKB:PA162400810 GenomeRNAi:166863 NextBio:88637 EMBL:AC009567
EMBL:AK125877 IPI:IPI00967774 SMR:B3KWU8 STRING:B3KWU8
Ensembl:ENST00000510397 UCSC:uc003iop.1 Uniprot:B3KWU8
Length = 470
Score = 122 (48.0 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 48/140 (34%), Positives = 68/140 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L F + V+WA E+ D ++M QR K L
Sbjct: 185 GFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEK--EVD-EETM--QR-VKVL 238
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK F + G V V+ R++AFV F +E+A A+ S K +
Sbjct: 239 YVRNL-MISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAAM-SVMNGKCI 296
Query: 127 DRVISVEYALKDDSERDDRY 146
D S+E L +++ +
Sbjct: 297 DGA-SIEVTLAKPVNKENTW 315
>TAIR|locus:2206850 [details] [associations]
symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
Length = 181
Score = 113 (44.8 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 37/109 (33%), Positives = 55/109 (50%)
Query: 54 DGSKS--MANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------R-RNFA 103
D S S ++ P L+V RT E ++ FE +GN++H+ + R + FA
Sbjct: 63 DSSSSPPSSSSGPKTKLYVSGLS-FRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFA 121
Query: 104 FVQFETQEEATKALESTDRSKLVDRVISVEYAL--KDDSERDDRYDSPR 150
F+++ET+EEA KA++ L RVI VE A D S R D P+
Sbjct: 122 FLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAKPRRDFPK 170
>UNIPROTKB|E2RTF9 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
EMBL:AAEX03010068 Ensembl:ENSCAFT00000037016 Uniprot:E2RTF9
Length = 485
Score = 122 (48.0 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 48/140 (34%), Positives = 68/140 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L F + V+WA E+ D ++M QR K L
Sbjct: 185 GFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEK--EVD-EETM--QR-VKVL 238
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK F + G V V+ R++AFV F +E+A A+ S K +
Sbjct: 239 YVRNL-MISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAAM-SVMNGKCI 296
Query: 127 DRVISVEYALKDDSERDDRY 146
D S+E L +++ +
Sbjct: 297 DGA-SIEVTLAKPVNKENTW 315
>UNIPROTKB|B4DZ27 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003676 UniGene:Hs.133095 HGNC:HGNC:28401 EMBL:AC009567
EMBL:AK302720 IPI:IPI00967437 SMR:B4DZ27 STRING:B4DZ27
Ensembl:ENST00000514866 UCSC:uc011cim.1 Uniprot:B4DZ27
Length = 485
Score = 122 (48.0 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 48/140 (34%), Positives = 68/140 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L F + V+WA E+ D ++M QR K L
Sbjct: 185 GFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEK--EVD-EETM--QR-VKVL 238
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK F + G V V+ R++AFV F +E+A A+ S K +
Sbjct: 239 YVRNL-MISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAAM-SVMNGKCI 296
Query: 127 DRVISVEYALKDDSERDDRY 146
D S+E L +++ +
Sbjct: 297 DGA-SIEVTLAKPVNKENTW 315
>ZFIN|ZDB-GENE-040426-2397 [details] [associations]
symbol:srsf9 "serine/arginine-rich splicing factor
9" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2397 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000276234 OrthoDB:EOG4CC42K EMBL:BC154583
IPI:IPI00510602 UniGene:Dr.108357 ProteinModelPortal:A8WG53
SMR:A8WG53 STRING:A8WG53 Bgee:A8WG53 Uniprot:A8WG53
Length = 246
Score = 95 (38.5 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 37/128 (28%), Positives = 58/128 (45%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRD---GSKSMANQR--- 63
FAFV FED RDA DA+ G + +G+ +L VE+ R + G R
Sbjct: 44 FAFVRFEDPRDAEDAVFGRNG--YGFGDCKLRVEYPRSSGSKFSGPAGGGGGGGGPRGRF 101
Query: 64 --PTKT----LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEA 113
PT+ + V P + + D+K H G+V ++R+ F++ E E A
Sbjct: 102 GPPTRRSEFRVIVTGLPPTGSWQ-DLKDHMREAGDVCFADVQRDGEGVVEFLRREDMEYA 160
Query: 114 TKALESTD 121
+ L+ST+
Sbjct: 161 LRRLDSTE 168
Score = 90 (36.7 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 28/93 (30%), Positives = 44/93 (47%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-----FAFVQFETQEEATKALESTDR 122
++V N P+ +ERDI+ F YG + + ++ N FAFV+FE +A A+ +
Sbjct: 6 IYVGNL-PMDVQERDIEDLFFKYGKIRDIELKNNRSTIPFAFVRFEDPRDAEDAVFGRNG 64
Query: 123 SKLVDRVISVEYALKDDSERDDRYDSPRRGGYG 155
D + VEY S ++ P GG G
Sbjct: 65 YGFGDCKLRVEYPRSSGS----KFSGPAGGGGG 93
Score = 59 (25.8 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 18/39 (46%), Positives = 21/39 (53%)
Query: 178 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSP 216
R RS + RY P Y R SP R+RSP P + R SP
Sbjct: 193 RSRSRSRGRYTPP-YQSRGSPPP-RYRSP-PRHMTRHSP 228
>UNIPROTKB|G4MYV6 [details] [associations]
symbol:MGG_11418 "Nucleic acid-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001232
RefSeq:XP_003713424.1 ProteinModelPortal:G4MYV6
EnsemblFungi:MGG_11418T0 GeneID:2676363 KEGG:mgr:MGG_11418
Uniprot:G4MYV6
Length = 279
Score = 118 (46.6 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 37/135 (27%), Positives = 61/135 (45%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+YFE A A +N F + RR + + +RD + + + PT +L
Sbjct: 114 GFGFIYFETPEAAQKACEEANNT-FWHGRRINVAPRIKASKPGNRD-AMNQEERTPTSSL 171
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALEST 120
++ N P + + + F+ + VRI R FA F+ E ATKA+E
Sbjct: 172 YIGNI-PYESTDAALNNLFQDLEGLKDVRIAVDRSTGWPRGFAHADFKDVESATKAVEKV 230
Query: 121 DRSKLVDRVISVEYA 135
+L+ R + V+Y+
Sbjct: 231 KLMELMGRTLRVDYS 245
>UNIPROTKB|E2R8F4 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:AAEX03010068 RefSeq:XP_532699.1
ProteinModelPortal:E2R8F4 Ensembl:ENSCAFT00000013439 GeneID:475475
KEGG:cfa:475475 NextBio:20851314 Uniprot:E2R8F4
Length = 533
Score = 122 (48.0 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 48/140 (34%), Positives = 68/140 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L F + V+WA E+ D ++M QR K L
Sbjct: 185 GFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEK--EVD-EETM--QR-VKVL 238
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK F + G V V+ R++AFV F +E+A A+ S K +
Sbjct: 239 YVRNL-MISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAAM-SVMNGKCI 296
Query: 127 DRVISVEYALKDDSERDDRY 146
D S+E L +++ +
Sbjct: 297 DGA-SIEVTLAKPVNKENTW 315
>UNIPROTKB|Q8TBY0 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 EMBL:CH471056 CTD:166863 eggNOG:NOG235650
EMBL:BC028588 IPI:IPI00152304 RefSeq:NP_659416.1 UniGene:Hs.133095
HSSP:Q9NQ94 ProteinModelPortal:Q8TBY0 SMR:Q8TBY0 STRING:Q8TBY0
PhosphoSite:Q8TBY0 DMDM:74760436 PaxDb:Q8TBY0 PRIDE:Q8TBY0
Ensembl:ENST00000281722 GeneID:166863 KEGG:hsa:166863
UCSC:uc003ioo.3 GeneCards:GC04P155702 HGNC:HGNC:28401 HPA:HPA050601
neXtProt:NX_Q8TBY0 PharmGKB:PA162400810 InParanoid:Q8TBY0
OMA:YPGTKLT PhylomeDB:Q8TBY0 GenomeRNAi:166863 NextBio:88637
ArrayExpress:Q8TBY0 Bgee:Q8TBY0 CleanEx:HS_RBM46
Genevestigator:Q8TBY0 Uniprot:Q8TBY0
Length = 533
Score = 122 (48.0 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 48/140 (34%), Positives = 68/140 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L F + V+WA E+ D ++M QR K L
Sbjct: 185 GFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEK--EVD-EETM--QR-VKVL 238
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK F + G V V+ R++AFV F +E+A A+ S K +
Sbjct: 239 YVRNL-MISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAAM-SVMNGKCI 296
Query: 127 DRVISVEYALKDDSERDDRY 146
D S+E L +++ +
Sbjct: 297 DGA-SIEVTLAKPVNKENTW 315
>UNIPROTKB|F1RYR7 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:CU855658 RefSeq:XP_003129173.1
UniGene:Ssc.94502 Ensembl:ENSSSCT00000009851 GeneID:100513804
KEGG:ssc:100513804 Uniprot:F1RYR7
Length = 533
Score = 122 (48.0 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 48/140 (34%), Positives = 68/140 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L F + V+WA E+ D ++M QR K L
Sbjct: 185 GFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEK--EVD-EETM--QR-VKVL 238
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK F + G V V+ R++AFV F +E+A A+ S K +
Sbjct: 239 YVRNL-MISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAAM-SVMNGKCI 296
Query: 127 DRVISVEYALKDDSERDDRY 146
D S+E L +++ +
Sbjct: 297 DGA-SIEVTLAKPVNKENTW 315
>RGD|1560205 [details] [associations]
symbol:Rbm46 "RNA binding motif protein 46" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1560205 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OrthoDB:EOG4FR0RW OMA:YPGTKLT IPI:IPI00368354
RefSeq:NP_001129189.1 UniGene:Rn.145040 ProteinModelPortal:D3ZAE2
Ensembl:ENSRNOT00000035846 GeneID:310548 KEGG:rno:310548
UCSC:RGD:1560205 NextBio:662134 Uniprot:D3ZAE2
Length = 533
Score = 122 (48.0 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 48/140 (34%), Positives = 68/140 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L F + V+WA E+ D ++M QR K L
Sbjct: 185 GFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEK--EVD-EETM--QR-VKVL 238
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK F + G V V+ R++AFV F +E+A A+ S K +
Sbjct: 239 YVRNL-MISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAAM-SVMNGKCI 296
Query: 127 DRVISVEYALKDDSERDDRY 146
D S+E L +++ +
Sbjct: 297 DGA-SIEVTLAKPVNKENTW 315
>UNIPROTKB|E9PB51 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 IPI:IPI00974578
ProteinModelPortal:E9PB51 SMR:E9PB51 Ensembl:ENST00000510173
ArrayExpress:E9PB51 Bgee:E9PB51 Uniprot:E9PB51
Length = 240
Score = 113 (44.8 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 49/190 (25%), Positives = 77/190 (40%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-L 68
+ FV+ ED A DAIR L + Y +++ + + SK N+ T T L
Sbjct: 37 YGFVHIEDKTAAEDAIRNLHH----YKLHGVNI---------NVEASK---NKSKTSTKL 80
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
V N P T ++++ FE YG V+ I +++AFV E E+A +A+ D ++ +
Sbjct: 81 HVGNISPTCTN-KELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGK 139
Query: 129 VISVEYA---LKDDSERDDRYDSPRR----GGYGRHXXXXXXXXXXXXXXXXXDYGRGRS 181
+ V+ + L+ D+ R G YGR RS
Sbjct: 140 RMHVQLSTSRLRTAPGMGDQSGCYRHLLPTSGAAATAAAAAAAAAAVTAASTSYYGRDRS 199
Query: 182 PAYDRYNGPV 191
P R PV
Sbjct: 200 PLR-RATAPV 208
Score = 35 (17.4 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 6/7 (85%), Positives = 7/7 (100%)
Query: 218 YGRNRSP 224
YGR+RSP
Sbjct: 194 YGRDRSP 200
>ZFIN|ZDB-GENE-030131-4862 [details] [associations]
symbol:syncrip "synaptotagmin binding, cytoplasmic
RNA interacting protein" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-4862 GO:GO:0000166 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
GO:GO:0003676 EMBL:CT573058 IPI:IPI00504625
Ensembl:ENSDART00000129870 Bgee:F1QY96 Uniprot:F1QY96
Length = 694
Score = 123 (48.4 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 42/137 (30%), Positives = 67/137 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + D + MA K L
Sbjct: 351 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWA--DPIEDPD-PEVMAK---VKVL 404
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +GN+ V+ +++AFV F ++ A KAL + +L
Sbjct: 405 FVRNLANSVTEEI-LEKAFGQFGNLERVKKLKDYAFVHFNDRDGAVKALTEMNGKELEGE 463
Query: 129 VISVEYALKDDSERDDR 145
I + +A D +R +R
Sbjct: 464 HIEIVFAKPPDQKRKER 480
>UNIPROTKB|E1C8Y9 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0043274 "phospholipase binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892 OMA:SPPPRRX
EMBL:AADN02044872 IPI:IPI00580212 RefSeq:NP_001182483.1
UniGene:Gga.13500 ProteinModelPortal:E1C8Y9 SMR:E1C8Y9 PRIDE:E1C8Y9
Ensembl:ENSGALT00000000735 GeneID:419815 KEGG:gga:419815
NextBio:20822814 Uniprot:E1C8Y9
Length = 164
Score = 97 (39.2 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 29/57 (50%), Positives = 33/57 (57%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE-RGRHRDGSKSMANQRP 64
GFAFV FED RDAADA+R LD R R VE + GE R R+R G +RP
Sbjct: 47 GFAFVEFEDPRDAADAVRELDGRTLCGCRVR--VELSNGEKRSRNR-GPPPSWGRRP 100
Score = 45 (20.9 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 20/51 (39%), Positives = 22/51 (43%)
Query: 175 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 225
DY R RSP R P +RRS R RS R RS RN P+
Sbjct: 103 DYRR-RSPP-PRRRSP---RRRSFSRSRSRSLSRDRRRERSLSRERNHKPS 148
>UNIPROTKB|Q3SZR8 [details] [associations]
symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
species:9913 "Bos taurus" [GO:0043274 "phospholipase binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG302928 GeneTree:ENSGT00700000104452 HSSP:Q07955
EMBL:BC102735 IPI:IPI00689088 RefSeq:NP_001029872.1 UniGene:Bt.4741
ProteinModelPortal:Q3SZR8 SMR:Q3SZR8 STRING:Q3SZR8 PRIDE:Q3SZR8
Ensembl:ENSBTAT00000051953 GeneID:540276 KEGG:bta:540276 CTD:6428
InParanoid:Q3SZR8 KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12
NextBio:20878535 Uniprot:Q3SZR8
Length = 164
Score = 97 (39.2 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 29/57 (50%), Positives = 33/57 (57%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE-RGRHRDGSKSMANQRP 64
GFAFV FED RDAADA+R LD R R VE + GE R R+R G +RP
Sbjct: 47 GFAFVEFEDPRDAADAVRELDGRTLCGCRVR--VELSNGEKRSRNR-GPPPSWGRRP 100
Score = 45 (20.9 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 20/51 (39%), Positives = 22/51 (43%)
Query: 175 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 225
DY R RSP R P +RRS R RS R RS RN P+
Sbjct: 103 DYRR-RSPP-PRRRSP---RRRSFSRSRSRSLSRDRRRERSLSRERNHKPS 148
>UNIPROTKB|F2Z4N6 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043274 "phospholipase binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
OMA:SPPPRRX EMBL:AAEX03008285 RefSeq:XP_532124.3 UniGene:Cfa.246
ProteinModelPortal:F2Z4N6 SMR:F2Z4N6 PRIDE:F2Z4N6
Ensembl:ENSCAFT00000002186 GeneID:403687 KEGG:cfa:403687
NextBio:20817191 Uniprot:F2Z4N6
Length = 164
Score = 97 (39.2 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 29/57 (50%), Positives = 33/57 (57%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE-RGRHRDGSKSMANQRP 64
GFAFV FED RDAADA+R LD R R VE + GE R R+R G +RP
Sbjct: 47 GFAFVEFEDPRDAADAVRELDGRTLCGCRVR--VELSNGEKRSRNR-GPPPSWGRRP 100
Score = 45 (20.9 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 20/51 (39%), Positives = 22/51 (43%)
Query: 175 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 225
DY R RSP R P +RRS R RS R RS RN P+
Sbjct: 103 DYRR-RSPP-PRRRSP---RRRSFSRSRSRSLSRDRRRERSLSRERNHKPS 148
>UNIPROTKB|P84103 [details] [associations]
symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0043274 "phospholipase binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006406 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
EMBL:Z85986 eggNOG:NOG302928 CTD:6428 KO:K12892 OMA:SPPPRRX
OrthoDB:EOG4VDQ12 EMBL:L10838 EMBL:AF107405 EMBL:BT007017
EMBL:BC000914 EMBL:BC069018 IPI:IPI00010204 PIR:I54089
RefSeq:NP_003008.1 UniGene:Hs.405144 PDB:2I2Y PDB:2I38 PDBsum:2I2Y
PDBsum:2I38 ProteinModelPortal:P84103 SMR:P84103 IntAct:P84103
MINT:MINT-5002707 STRING:P84103 PhosphoSite:P84103 DMDM:51338672
PaxDb:P84103 PRIDE:P84103 DNASU:6428 Ensembl:ENST00000373715
GeneID:6428 KEGG:hsa:6428 UCSC:uc003omj.3 GeneCards:GC06P036562
HGNC:HGNC:10785 HPA:CAB012986 MIM:603364 neXtProt:NX_P84103
PharmGKB:PA35701 InParanoid:P84103 PhylomeDB:P84103 ChiTaRS:SRSF3
EvolutionaryTrace:P84103 GenomeRNAi:6428 NextBio:24965
ArrayExpress:P84103 Bgee:P84103 CleanEx:HS_SFRS3
Genevestigator:P84103 GermOnline:ENSG00000112081 Uniprot:P84103
Length = 164
Score = 97 (39.2 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 29/57 (50%), Positives = 33/57 (57%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE-RGRHRDGSKSMANQRP 64
GFAFV FED RDAADA+R LD R R VE + GE R R+R G +RP
Sbjct: 47 GFAFVEFEDPRDAADAVRELDGRTLCGCRVR--VELSNGEKRSRNR-GPPPSWGRRP 100
Score = 45 (20.9 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 20/51 (39%), Positives = 22/51 (43%)
Query: 175 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 225
DY R RSP R P +RRS R RS R RS RN P+
Sbjct: 103 DYRR-RSPP-PRRRSP---RRRSFSRSRSRSLSRDRRRERSLSRERNHKPS 148
>MGI|MGI:98285 [details] [associations]
symbol:Srsf3 "serine/arginine-rich splicing factor 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008286 "insulin receptor signaling pathway" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0043274 "phospholipase binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:98285 GO:GO:0008286
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG302928 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
OMA:SPPPRRX EMBL:X53824 EMBL:X91656 EMBL:AK011657 EMBL:AK078891
EMBL:AK134177 EMBL:AK135298 EMBL:AK145089 EMBL:AK145715
EMBL:AK146010 EMBL:AK146253 EMBL:AK150912 EMBL:AK153209
EMBL:BC068111 EMBL:BC071196 EMBL:BC083316 IPI:IPI00129323
IPI:IPI00221826 PIR:S14016 RefSeq:NP_038691.1 UniGene:Mm.473125
UniGene:Mm.6787 ProteinModelPortal:P84104 SMR:P84104 IntAct:P84104
STRING:P84104 PhosphoSite:P84104 PaxDb:P84104 PRIDE:P84104
Ensembl:ENSMUST00000037776 Ensembl:ENSMUST00000130216 GeneID:20383
KEGG:mmu:20383 InParanoid:P84104 NextBio:298302 Bgee:P84104
CleanEx:MM_SFRS3 Genevestigator:P84104
GermOnline:ENSMUSG00000071172 Uniprot:P84104
Length = 164
Score = 97 (39.2 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 29/57 (50%), Positives = 33/57 (57%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE-RGRHRDGSKSMANQRP 64
GFAFV FED RDAADA+R LD R R VE + GE R R+R G +RP
Sbjct: 47 GFAFVEFEDPRDAADAVRELDGRTLCGCRVR--VELSNGEKRSRNR-GPPPSWGRRP 100
Score = 45 (20.9 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 20/51 (39%), Positives = 22/51 (43%)
Query: 175 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 225
DY R RSP R P +RRS R RS R RS RN P+
Sbjct: 103 DYRR-RSPP-PRRRSP---RRRSFSRSRSRSLSRDRRRERSLSRERNHKPS 148
>RGD|1309233 [details] [associations]
symbol:Srsf3 "serine/arginine-rich splicing factor 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA;ISO] [GO:0043274
"phospholipase binding" evidence=IEA;ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309233 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:CH473988 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 HOGENOM:HOG000276234 CTD:6428
KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12 EMBL:DQ480748
IPI:IPI00372826 RefSeq:NP_001041372.1 UniGene:Rn.9002 SMR:Q0ZFS8
STRING:Q0ZFS8 Ensembl:ENSRNOT00000000627 GeneID:361814
KEGG:rno:361814 UCSC:RGD:1309233 InParanoid:Q0ZFS8 NextBio:677698
Genevestigator:Q0ZFS8 Uniprot:Q0ZFS8
Length = 164
Score = 97 (39.2 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 29/57 (50%), Positives = 33/57 (57%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE-RGRHRDGSKSMANQRP 64
GFAFV FED RDAADA+R LD R R VE + GE R R+R G +RP
Sbjct: 47 GFAFVEFEDPRDAADAVRELDGRTLCGCRVR--VELSNGEKRSRNR-GPPPSWGRRP 100
Score = 45 (20.9 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 20/51 (39%), Positives = 22/51 (43%)
Query: 175 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 225
DY R RSP R P +RRS R RS R RS RN P+
Sbjct: 103 DYRR-RSPP-PRRRSP---RRRSFSRSRSRSLSRDRRRERSLSRERNHKPS 148
>UNIPROTKB|I3LKZ4 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:YYPPPRM Ensembl:ENSSSCT00000026418 Uniprot:I3LKZ4
Length = 599
Score = 122 (48.0 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 40/137 (29%), Positives = 66/137 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + D + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWA--DPVEEPD-PEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AFV FE + A KA++ + ++
Sbjct: 344 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGE 402
Query: 129 VISVEYALKDDSERDDR 145
I + A D +R +R
Sbjct: 403 EIEIVLAKPPDKKRKER 419
>UNIPROTKB|F1NWI9 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:AADN02002396 IPI:IPI00680994 Ensembl:ENSGALT00000031678
ArrayExpress:F1NWI9 Uniprot:F1NWI9
Length = 622
Score = 122 (48.0 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 40/137 (29%), Positives = 67/137 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + D + MA K L
Sbjct: 286 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWA--DPIEDPD-PEVMAK---VKVL 339
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AF+ F+ ++ A KA+E + L
Sbjct: 340 FVRNLANTVTEEI-LEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGE 398
Query: 129 VISVEYALKDDSERDDR 145
I + +A D +R +R
Sbjct: 399 NIEIVFAKPPDQKRKER 415
>UNIPROTKB|F1NQW8 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 IPI:IPI00573494 EMBL:AADN02025726
Ensembl:ENSGALT00000039052 Uniprot:F1NQW8
Length = 184
Score = 112 (44.5 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 52/198 (26%), Positives = 72/198 (36%)
Query: 19 RDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRP----------TKTL 68
RDA DA+ G D + YD RL VE+ R RG R G P ++
Sbjct: 1 RDAEDAVYGRDG--YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYR 58
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVD 127
+++ P +D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 59 VIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRS 118
Query: 128 RVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRY 187
Y + D PR YGR R SP R
Sbjct: 119 HEGETAYIRV-------KVDGPRSPSYGRSRSRSRSRSRSRSRSNSRS--RSYSPRRSR- 168
Query: 188 NGPVYDQRRSPDHGRHRS 205
P Y SP H R RS
Sbjct: 169 GSPRY----SPRHSRSRS 182
>ZFIN|ZDB-GENE-030131-9612 [details] [associations]
symbol:si:ch211-241e15.2 "si:ch211-241e15.2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-9612 GO:GO:0000166
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0003676 EMBL:BX901913
IPI:IPI00886586 Ensembl:ENSDART00000089070 ArrayExpress:F1Q5Y6
Bgee:F1Q5Y6 Uniprot:F1Q5Y6
Length = 601
Score = 122 (48.0 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 43/146 (29%), Positives = 72/146 (49%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 206 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 259
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E +++ F + G V V+ R++AFV F ++++A A+++ + +++
Sbjct: 260 YVRNL-MIETSEEILRQTFGQFNPGCVERVKKIRDYAFVHFASRDDAVVAMDNLNGTEIE 318
Query: 127 DRVISVEYALKDDSERDDRYDSPRRG 152
I V A D E+ RY +G
Sbjct: 319 GSRIEVTLAKPVDKEQYTRYQKASKG 344
Score = 36 (17.7 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 177 GRGRSPAYDRYNGP 190
GRGR+ A R GP
Sbjct: 393 GRGRAGASSRGPGP 406
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 119 (46.9 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 39/157 (24%), Positives = 73/157 (46%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR---G--ERGRHRDGSKSMANQR 63
G+ FV F D+ + A+ ++ + R+ + G ++ +++ +
Sbjct: 219 GYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESD 278
Query: 64 PTKT-LFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALEST 120
P T +FV DP E +++ F PYG ++HV+I + FVQF T+ A +AL S
Sbjct: 279 PNNTTIFVGGLDPT-VAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGTRASAEQALSSL 337
Query: 121 DRSKLVDRVISVEYALKDDSERDDRYDSPRRGG--YG 155
+ ++L + I + + S++ D+ GG YG
Sbjct: 338 NGTQLGGQSIRLSWGRSPSSKQTDQTQWGGSGGAYYG 374
>ZFIN|ZDB-GENE-030131-3104 [details] [associations]
symbol:syncripl "synaptotagmin binding,
cytoplasmic RNA interacting protein, like" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-3104
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GO:GO:0003676 HSSP:P09651
EMBL:BC046902 IPI:IPI00513002 RefSeq:NP_955973.1 UniGene:Dr.78854
ProteinModelPortal:Q802X5 SMR:Q802X5 STRING:Q802X5 GeneID:324384
KEGG:dre:324384 CTD:324384 InParanoid:Q802X5 NextBio:20808747
Uniprot:Q802X5
Length = 560
Score = 117 (46.2 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 41/137 (29%), Positives = 65/137 (47%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + D + MA K L
Sbjct: 288 GFCFLGYEDHKTAAQARRRLMSGKVKVWGNVVTVEWA--DPIEDPD-PEVMAK---VKVL 341
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AF+ FE ++ A KAL L
Sbjct: 342 FVRNLASTVTEEL-LEKTFCQFGKLERVKKLKDYAFIHFEERDGAVKALAELHGKDLEGE 400
Query: 129 VISVEYALKDDSERDDR 145
I + +A D +R +R
Sbjct: 401 PIEIVFAKPPDQKRKER 417
Score = 41 (19.5 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 17/51 (33%), Positives = 21/51 (41%)
Query: 175 DYGRGRSPAYDRYNGPVYDQRRSPDHGR-HRSP-VPVYDRRRSPDYGRNRS 223
DY R D Y G YD ++ GR +R VP R R R R+
Sbjct: 473 DYHNYRGGYDDPYYG--YDDFQAHVRGRGNRGVRVPTLSRGRGSSVSRGRA 521
>UNIPROTKB|F1RY92 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104452 OMA:SPPPRRX EMBL:CU633682
Ensembl:ENSSSCT00000001743 Uniprot:F1RY92
Length = 164
Score = 96 (38.9 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 29/57 (50%), Positives = 33/57 (57%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE-RGRHRDGSKSMANQRP 64
GFAFV FED RDAADA+R LD R R VE + GE R R+R G +RP
Sbjct: 47 GFAFVEFEDPRDAADAVRELDGGTLCGCRVR--VELSNGEKRSRNR-GPPPSWGRRP 100
Score = 45 (20.9 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 20/51 (39%), Positives = 22/51 (43%)
Query: 175 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 225
DY R RSP R P +RRS R RS R RS RN P+
Sbjct: 103 DYRR-RSPP-PRRRSP---RRRSFSRSRSRSLSRDRRRERSLSRERNHKPS 148
>POMBASE|SPAC16.02c [details] [associations]
symbol:srp2 "mRNA export factor Srp2" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006406 "mRNA export from nucleus" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IPI] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC16.02c
GO:GO:0005634 EMBL:CU329670 GO:GO:0008380 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006406
eggNOG:COG0724 GO:GO:0008143 OrthoDB:EOG4BP4N7 EMBL:AF012278
EMBL:D89163 PIR:T37730 PIR:T42525 RefSeq:NP_594570.1
ProteinModelPortal:P78814 STRING:P78814 PRIDE:P78814
EnsemblFungi:SPAC16.02c.1 GeneID:2542772 KEGG:spo:SPAC16.02c
OMA:CKERSHG NextBio:20803816 Uniprot:P78814
Length = 365
Score = 118 (46.6 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 60/227 (26%), Positives = 91/227 (40%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQ--RPTK 66
GF FV ED RDA D + F R + VE ARGER R + +S A++ RP +
Sbjct: 38 GFGFVEVEDARDARDIVNDFQGKEFMGSR--IVVEPARGERRRRENFRESAASKYPRPRR 95
Query: 67 T---LFVINF-DPIRTRE-RDIKRHF-EPYGNVLHVRIRRNFAFVQFETQEEATKALEST 120
T L V N + + ++ +D+ R EP H R V+F T+E+ AL S
Sbjct: 96 TGFRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAH-RENPGAGVVEFSTEEDMRNALTSL 154
Query: 121 DRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGR 180
+ + + +++ D+ + + P R DY RG
Sbjct: 155 NGEVIKGQAVTLRE--DPDAANEPLPEVPSR---------FRSRSPPARRRYRDDYRRGG 203
Query: 181 SPAYDRYNGPVYDQRRSPDHGRHR-SPVPVYDRRRSPDYGRNRSPNF 226
D Y D+RR G +R + Y R +Y RN ++
Sbjct: 204 DYRRDAYRPGRDDERRYAPRGEYRRNNRDEYRRGGRDEYRRNSRSDY 250
>MGI|MGI:3645057 [details] [associations]
symbol:Rbm46 "RNA binding motif protein 46" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:3645057 GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 GO:GO:0003723 CTD:166863 eggNOG:NOG235650
OrthoDB:EOG4FR0RW OMA:YPGTKLT EMBL:AC158935 IPI:IPI00672754
RefSeq:NP_001139800.1 UniGene:Mm.265114 ProteinModelPortal:P86049
SMR:P86049 PhosphoSite:P86049 PaxDb:P86049 PRIDE:P86049
Ensembl:ENSMUST00000048647 GeneID:633285 KEGG:mmu:633285
UCSC:uc012cqu.1 NextBio:422664 Bgee:P86049 Genevestigator:P86049
Uniprot:P86049
Length = 533
Score = 120 (47.3 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 48/140 (34%), Positives = 68/140 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L F + V+WA E+ D ++M QR K L
Sbjct: 185 GFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEK--EVD-EETM--QR-VKVL 238
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK F + G V V+ R++AFV F +E+A A+ S K +
Sbjct: 239 YVRNL-MISTTEETIKAEFSKFKPGAVERVKKLRDYAFVHFFHREDAVAAM-SVMNGKCI 296
Query: 127 DRVISVEYALKDDSERDDRY 146
D S+E L +++ +
Sbjct: 297 DGA-SIEVTLAKPVNKENTW 315
>ZFIN|ZDB-GENE-040426-1798 [details] [associations]
symbol:zgc:77155 "zgc:77155" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-040426-1798 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 EMBL:BX547938 GeneTree:ENSGT00700000104452
HOGENOM:HOG000276234 KO:K12896 EMBL:BC065586 IPI:IPI00493121
RefSeq:NP_991236.1 UniGene:Dr.701 SMR:Q6P0K2 STRING:Q6P0K2
Ensembl:ENSDART00000051185 Ensembl:ENSDART00000135776 GeneID:402972
KEGG:dre:402972 InParanoid:Q6P0K2 NextBio:20816781 Uniprot:Q6P0K2
Length = 258
Score = 85 (35.0 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 9 GFAFVYFEDDRDAADAIRGLDN-IPFGYDRRRLSVEWARGERGRHRDGSKS 58
GFAFV +ED RDA DA++G+D + G R+ VE + G + R G S
Sbjct: 51 GFAFVEYEDARDAEDAVKGMDGKVLCG---ARVRVELSNGMSRKSRYGRPS 98
Score = 69 (29.3 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 22/48 (45%), Positives = 26/48 (54%)
Query: 178 RGRSPAYDR-YNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 224
R RS + +R Y P Y +RRS RS P R RSP GR+RSP
Sbjct: 148 RSRSRSNERRYRSPSYSKRRS------RSGSPGRSRSRSPG-GRSRSP 188
Score = 59 (25.8 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 36/146 (24%), Positives = 52/146 (35%)
Query: 81 RDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 140
R +R F+P ++A+ + + ++ S RS+ R Y + S
Sbjct: 96 RPSRRQFDPNDRCYQCGETGHYAYDCYRFSKRRSRRSRSGSRSRSRSR--GRRYRSRSRS 153
Query: 141 ERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQR-RSPD 199
+ RY SP Y + GR RSP R PV R R+P
Sbjct: 154 N-ERRYRSP---SYSKRRSRSGSPGRSRSRSPG---GRSRSPVR-RSKSPVRRSRSRTPL 205
Query: 200 H--GRHRSPVPVYDRRRSPDYGRNRS 223
H R RS R+R R+RS
Sbjct: 206 HRDSRSRSRSRSGSRQRDRSVSRSRS 231
>UNIPROTKB|P30352 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
Length = 221
Score = 113 (44.8 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 47/169 (27%), Positives = 65/169 (38%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 128
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 129 VISVE---YALKDDSERDDRYDSPRR---GGYGRHXXX-------XXXXXXXXXXXXXXD 175
+ V+ Y DS R PRR GYGR
Sbjct: 84 ELRVQMARYGRPPDSHHSRRGPPPRRYGSSGYGRRSRSPRRRRRSRSRSRSRSRSRSRSR 143
Query: 176 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 224
Y R +S + R + RS + +S R RS R+RSP
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
>UNIPROTKB|B4E241 [details] [associations]
symbol:SFRS3 "Splicing factor, arginine/serine-rich 3,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471081 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z85986 OrthoDB:EOG4VDQ12
UniGene:Hs.405144 HGNC:HGNC:10785 ChiTaRS:SRSF3 EMBL:AK304097
IPI:IPI00843996 SMR:B4E241 STRING:B4E241 Ensembl:ENST00000339436
Ensembl:ENST00000477442 UCSC:uc011dtp.1 HOGENOM:HOG000208722
HOVERGEN:HBG104956 Uniprot:B4E241
Length = 124
Score = 97 (39.2 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 29/57 (50%), Positives = 33/57 (57%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE-RGRHRDGSKSMANQRP 64
GFAFV FED RDAADA+R LD R R VE + GE R R+R G +RP
Sbjct: 47 GFAFVEFEDPRDAADAVRELDGRTLCGCRVR--VELSNGEKRSRNR-GPPPSWGRRP 100
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 97 (39.2 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEA 113
+R + LFV T ++ +++ F P+G + R+ R+ F F+ F+++++A
Sbjct: 3 KRISAQLFVSRLSAYTT-DQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDA 61
Query: 114 TKALESTDRSKLVD-RVISVEYALKDDSER 142
KAL+S D K+VD R+I VE A + R
Sbjct: 62 RKALKSLD-GKIVDGRLIFVEVAKNAEEVR 90
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 118 (46.6 bits), Expect = 0.00010, P = 0.00010
Identities = 34/116 (29%), Positives = 62/116 (53%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA---RGERGRHRDGSKSMAN--QR 63
G+ FV F + ++A +AI G++ G +R + WA E R + + + N +
Sbjct: 267 GYGFVSFPNKQNAENAIAGMNGKWIG--KRAVRTNWAARKNSEENRDKLTFEQVFNSTKA 324
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKAL 117
+++V N +T + D++ F YG++ VRI + +AFV++E +E ATKA+
Sbjct: 325 DNTSVYVGNISQ-QTTDADLRDLFSTYGDIAEVRIFKTQRYAFVRYEKKECATKAI 379
>TAIR|locus:2199837 [details] [associations]
symbol:RSZ21 "RS-containing zinc finger protein 21"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002684 GO:GO:0000166
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 HSSP:P19339 EMBL:AC002423
GO:GO:0000398 OMA:ARECRRG HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AF033587 EMBL:AJ002377 EMBL:AK317576
IPI:IPI00539601 PIR:A86373 PIR:T51584 PIR:T52628 RefSeq:NP_564208.1
RefSeq:NP_973901.1 UniGene:At.22803 ProteinModelPortal:O81127
SMR:O81127 IntAct:O81127 STRING:O81127 PRIDE:O81127
EnsemblPlants:AT1G23860.1 EnsemblPlants:AT1G23860.2 GeneID:838997
KEGG:ath:AT1G23860 TAIR:At1g23860 InParanoid:O81127
PhylomeDB:O81127 Genevestigator:O81127 Uniprot:O81127
Length = 187
Score = 110 (43.8 bits), Expect = 0.00011, P = 0.00011
Identities = 45/160 (28%), Positives = 70/160 (43%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN---FAFVQFETQEEATKALESTDRSK 124
++V N DP R ER+++ F+ +G + +V + R +AF++F+ + +A A+ + DR
Sbjct: 4 VYVGNLDP-RVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRKN 62
Query: 125 LVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAY 184
VE + KD R RRGG + RGR
Sbjct: 63 ----GWRVELSHKDKGGRGG--GGGRRGGI----EDSKCYECGELGHFARECRRGRGSV- 111
Query: 185 DRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 224
R P +RRSPD+G R + RR SP R+ +P
Sbjct: 112 -RRRSPSPRRRRSPDYGYARRSISPRGRR-SPPRRRSVTP 149
>UNIPROTKB|E1BZR1 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 OMA:YYPPPRM EMBL:AADN02051307 EMBL:AADN02051308
IPI:IPI00597410 ProteinModelPortal:E1BZR1
Ensembl:ENSGALT00000001185 ArrayExpress:E1BZR1 Uniprot:E1BZR1
Length = 661
Score = 120 (47.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 40/137 (29%), Positives = 65/137 (47%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + D + MA K L
Sbjct: 318 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWA--DPVEEPD-PEVMAK---VKVL 371
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AFV FE + A KA+ + ++
Sbjct: 372 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMNEMNGKEIEGE 430
Query: 129 VISVEYALKDDSERDDR 145
I + A D +R +R
Sbjct: 431 EIEIVLAKPPDKKRKER 447
Score = 37 (18.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 14/47 (29%), Positives = 16/47 (34%)
Query: 175 DYGRG-RSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGR 220
DY G P Y +G R G +P P R P GR
Sbjct: 508 DYRGGYEDPYYGYDDGYAIRGRGGGGRGGRGAPPPPRGRGAPPPRGR 554
>RGD|1305683 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO;ISS]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=ISO]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=ISO;ISS] [GO:0071346 "cellular response to
interferon-gamma" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305683 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0005681 GO:GO:0003723
GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160 EMBL:AY325202
IPI:IPI00382222 RefSeq:NP_001041381.1 UniGene:Rn.202606
ProteinModelPortal:Q7TP47 SMR:Q7TP47 IntAct:Q7TP47 STRING:Q7TP47
PhosphoSite:Q7TP47 PRIDE:Q7TP47 Ensembl:ENSRNOT00000041655
GeneID:363113 KEGG:rno:363113 UCSC:RGD:1305683 HOGENOM:HOG000186082
NextBio:682484 ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 118 (46.6 bits), Expect = 0.00013, P = 0.00013
Identities = 40/137 (29%), Positives = 66/137 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + +VEWA + D + MA K L
Sbjct: 197 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWA--DPIEDPD-PEVMAK---VKVL 250
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AF+ F+ ++ A KA+E + L
Sbjct: 251 FVRNLANTVTEEI-LEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGE 309
Query: 129 VISVEYALKDDSERDDR 145
I + +A D +R +R
Sbjct: 310 NIEIVFAKPPDQKRKER 326
>UNIPROTKB|Q7TP47 [details] [associations]
symbol:Syncrip "Heterogeneous nuclear ribonucleoprotein Q"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1305683 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
GO:GO:0006397 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005681
GO:GO:0003723 GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160
EMBL:AY325202 IPI:IPI00382222 RefSeq:NP_001041381.1
UniGene:Rn.202606 ProteinModelPortal:Q7TP47 SMR:Q7TP47
IntAct:Q7TP47 STRING:Q7TP47 PhosphoSite:Q7TP47 PRIDE:Q7TP47
Ensembl:ENSRNOT00000041655 GeneID:363113 KEGG:rno:363113
UCSC:RGD:1305683 HOGENOM:HOG000186082 NextBio:682484
ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 118 (46.6 bits), Expect = 0.00013, P = 0.00013
Identities = 40/137 (29%), Positives = 66/137 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + +VEWA + D + MA K L
Sbjct: 197 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWA--DPIEDPD-PEVMAK---VKVL 250
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AF+ F+ ++ A KA+E + L
Sbjct: 251 FVRNLANTVTEEI-LEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGE 309
Query: 129 VISVEYALKDDSERDDR 145
I + +A D +R +R
Sbjct: 310 NIEIVFAKPPDQKRKER 326
>ZFIN|ZDB-GENE-030616-631 [details] [associations]
symbol:srsf3a "serine/arginine-rich splicing factor
3a" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030616-631 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q61474 EMBL:AL732567
GeneTree:ENSGT00700000104452 HOVERGEN:HBG104956 OMA:RSRSMYR
EMBL:BC071322 IPI:IPI00510131 RefSeq:NP_001002053.1
UniGene:Dr.40822 SMR:Q801U3 STRING:Q801U3
Ensembl:ENSDART00000028217 GeneID:368925 KEGG:dre:368925 CTD:368925
InParanoid:Q801U3 OrthoDB:EOG4RJG36 NextBio:20813270 Uniprot:Q801U3
Length = 174
Score = 79 (32.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 82 DIKRHFEPYGNVLHVRIRRN---FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138
+++R F YG + V + RN FAFV+FE +AT A+ D L + VE +
Sbjct: 29 ELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDATDAVRELDGRTLCGCRVRVEMS--- 85
Query: 139 DSERDDRYDSP 149
+ E+ R+ P
Sbjct: 86 NGEKRSRFRGP 96
Score = 67 (28.6 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 18/43 (41%), Positives = 20/43 (46%)
Query: 180 RSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNR 222
R P D G Y +R SP RHRSP + R RS R R
Sbjct: 102 RRPRDDYRRGDDYRRRSSPP-ARHRSPRRSFSRSRSRSLSRER 143
Score = 61 (26.5 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 20/48 (41%), Positives = 25/48 (52%)
Query: 178 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSP--DYGRNRS 223
RG P++ R P D RR D+ R SP P R RSP + R+RS
Sbjct: 94 RGPPPSWSRR--PRDDYRRGDDYRRRSSP-PA--RHRSPRRSFSRSRS 136
>FB|FBgn0011305 [details] [associations]
symbol:Rsf1 "Repressor splicing factor 1" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;TAS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=TAS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:AE014134 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0048025 CTD:51773 EMBL:L34935 EMBL:L23835
RefSeq:NP_477001.2 UniGene:Dm.4180 ProteinModelPortal:Q24491
SMR:Q24491 IntAct:Q24491 MINT:MINT-277287 STRING:Q24491
PaxDb:Q24491 PRIDE:Q24491 GeneID:34370 KEGG:dme:Dmel_CG5655
FlyBase:FBgn0011305 eggNOG:NOG255799 InParanoid:Q24491
OrthoDB:EOG4QJQ4W GenomeRNAi:34370 NextBio:788156 Bgee:Q24491
GermOnline:CG5655 Uniprot:Q24491
Length = 197
Score = 110 (43.8 bits), Expect = 0.00014, P = 0.00014
Identities = 35/107 (32%), Positives = 56/107 (52%)
Query: 59 MANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN---FAFVQFETQEEATK 115
M +QR T+ ++V N + ++ D++ F YG + V I N FAFV+FE +++A K
Sbjct: 1 MGDQRGTR-VYVGNLTD-KVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEK 58
Query: 116 ALESTDRSKLVDRVISVEYALKDDSERDDRYDSP-----RRGGYGRH 157
A + + S+L+ + VE + R R P RRG +GRH
Sbjct: 59 ACDILNGSELLGSQLRVE--ISKGRPRQGRRGGPMDRGGRRGDFGRH 103
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 116 (45.9 bits), Expect = 0.00014, P = 0.00014
Identities = 39/160 (24%), Positives = 77/160 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE---RGRHRDGSKSMANQR-- 63
G+ +V FE A A+ + D R ++++ + G+ + D +K + +
Sbjct: 210 GYGYVDFESKSAAEKALEEMQGKEI--DGRPINLDMSTGKPHASKSNNDRAKQYGDSQSP 267
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P+ TLF+ N R+ ++ F YGNV+ R+ + F +VQF + +EA
Sbjct: 268 PSDTLFIGNLSFNANRD-NLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKA 326
Query: 116 ALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYG 155
ALE+ + + R ++++ D+ ++ ++ RRGG+G
Sbjct: 327 ALEAMNGEYIEGRPCRLDFSTPRDNTNNNNNNN-RRGGFG 365
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 116 (45.9 bits), Expect = 0.00014, P = 0.00014
Identities = 39/160 (24%), Positives = 77/160 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE---RGRHRDGSKSMANQR-- 63
G+ +V FE A A+ + D R ++++ + G+ + D +K + +
Sbjct: 210 GYGYVDFESKSAAEKALEEMQGKEI--DGRPINLDMSTGKPHASKSNNDRAKQYGDSQSP 267
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P+ TLF+ N R+ ++ F YGNV+ R+ + F +VQF + +EA
Sbjct: 268 PSDTLFIGNLSFNANRD-NLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKA 326
Query: 116 ALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYG 155
ALE+ + + R ++++ D+ ++ ++ RRGG+G
Sbjct: 327 ALEAMNGEYIEGRPCRLDFSTPRDNTNNNNNNN-RRGGFG 365
>UNIPROTKB|F1LSN0 [details] [associations]
symbol:Srsf4 "Protein Sfrs4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
IPI:IPI00951281 Ensembl:ENSRNOT00000064233 ArrayExpress:F1LSN0
Uniprot:F1LSN0
Length = 492
Score = 117 (46.2 bits), Expect = 0.00015, P = 0.00015
Identities = 61/237 (25%), Positives = 96/237 (40%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDR--RRLSVEWARGER--GRHRDGSKSMANQR-- 63
+ FV F+D RDA DA+ L+ G D R+ VE ARG R G + G +R
Sbjct: 41 YGFVEFDDLRDADDAVYELN----GKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSG 96
Query: 64 ------PTKTLFVINFDPIRTR--ERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEE 112
PT+T + + + + +R +D+K + G V + + R+N ++F + +
Sbjct: 97 RDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSD 156
Query: 113 ATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPR---RG-GYGRHXXXXXXXXXXX 168
+ALE D +++ R I + K S R Y R R RH
Sbjct: 157 MKRALEKLDGTEVNGRKIRLVED-KPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSS 215
Query: 169 XXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 225
R RS ++ R Q RS + +S P D + R+RSP+
Sbjct: 216 KSSHSKSRSRSRSGSHSRSKSRSRSQSRSRSK-KEKSRSPSKDNKSR---SRSRSPD 268
>UNIPROTKB|F1NJQ8 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
EMBL:AADN02016545 IPI:IPI00822755 ProteinModelPortal:F1NJQ8
Ensembl:ENSGALT00000038887 Uniprot:F1NJQ8
Length = 414
Score = 116 (45.9 bits), Expect = 0.00015, P = 0.00015
Identities = 47/146 (32%), Positives = 69/146 (47%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L F R + V+WA E+ D +++M R K L
Sbjct: 114 GFAFVEYESHRAAAMARRRLLPGTFQLWGRAVQVDWACPEK--EVD-AETM---RRVKVL 167
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK F + + R++ R++AFV F +E+A A+ S K +
Sbjct: 168 YVRNL-MISTTEDTIKAEFNKFKPRVVERVKKLRDYAFVHFYNREDAVAAM-SIMNGKCI 225
Query: 127 DRVISVEYALKDDSERDDRYDSPRRG 152
D S+E L ++ + G
Sbjct: 226 DGA-SIEVTLAKPVNKESTWKQHLNG 250
>UNIPROTKB|H0YEQ8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000470443 Uniprot:H0YEQ8
Length = 112
Score = 95 (38.5 bits), Expect = 0.00016, P = 0.00016
Identities = 32/116 (27%), Positives = 55/116 (47%)
Query: 22 ADAIRGLDNIPFGYDRRR-LSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRE 80
ADA R LD + F + + + + W++ + + G + N +F+ N D
Sbjct: 7 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSG---VGN------VFIKNLDK-SIDN 56
Query: 81 RDIKRHFEPYGNVLHVRI------RRNFAFVQFETQEEATKALESTDRSKLVDRVI 130
+ + F +GN+L ++ + +AFV FETQE A KA+E + L DR +
Sbjct: 57 KALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKV 112
>ZFIN|ZDB-GENE-061013-298 [details] [associations]
symbol:rbm46 "RNA binding motif protein 46"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-061013-298
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 EMBL:BC124720 IPI:IPI00610686 RefSeq:NP_001073493.2
UniGene:Dr.132665 ProteinModelPortal:Q08BH5 SMR:Q08BH5
GeneID:566042 KEGG:dre:566042 CTD:166863 eggNOG:NOG235650
OrthoDB:EOG4FR0RW NextBio:20887996 ArrayExpress:Q08BH5
Uniprot:Q08BH5
Length = 510
Score = 117 (46.2 bits), Expect = 0.00016, P = 0.00016
Identities = 49/158 (31%), Positives = 76/158 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E + AA A R L F + V+WA E+ D ++M QR + L
Sbjct: 169 GFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEK--ELD-EETM--QR-VRVL 222
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N + T E ++ F G+V V+ ++AF+ F +E+A ALES + K++
Sbjct: 223 YVRNL-MLSTTEETLRSEFSQLKPGSVERVKKLTDYAFIHFYNREDALTALESMN-GKVI 280
Query: 127 DRVISVEYALKDDSERD-DRYDSPRR--------GGYG 155
D +E L + +D ++ PR GGYG
Sbjct: 281 DGS-PIEVTLAKPASKDGNKRFGPRNCHNGVTAAGGYG 317
>MGI|MGI:1891690 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=ISO] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IDA] [GO:0071346
"cellular response to interferon-gamma" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1891690 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0071013 GO:GO:0008143
GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 CTD:10492 KO:K13160
OMA:GNMATEH OrthoDB:EOG4FN4HM EMBL:AF093821 EMBL:AB035725
EMBL:AK034845 EMBL:AK077588 EMBL:AK078158 EMBL:BC004001
EMBL:BC041148 EMBL:BC050079 EMBL:BC055863 EMBL:BC058807
EMBL:BC080309 EMBL:BC108363 EMBL:AF408434 IPI:IPI00406117
IPI:IPI00406118 RefSeq:NP_062640.2 RefSeq:NP_062770.1
UniGene:Mm.260545 ProteinModelPortal:Q7TMK9 SMR:Q7TMK9
STRING:Q7TMK9 PhosphoSite:Q7TMK9 REPRODUCTION-2DPAGE:IPI00406117
PaxDb:Q7TMK9 PRIDE:Q7TMK9 Ensembl:ENSMUST00000069221
Ensembl:ENSMUST00000173801 Ensembl:ENSMUST00000174282 GeneID:56403
KEGG:mmu:56403 UCSC:uc009qyo.1 UCSC:uc009qyq.1 InParanoid:Q7TMK9
NextBio:312520 Bgee:Q7TMK9 Genevestigator:Q7TMK9
GermOnline:ENSMUSG00000032423 Uniprot:Q7TMK9
Length = 623
Score = 118 (46.6 bits), Expect = 0.00016, P = 0.00016
Identities = 40/137 (29%), Positives = 66/137 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + +VEWA + D + MA K L
Sbjct: 287 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWA--DPIEDPD-PEVMAK---VKVL 340
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AF+ F+ ++ A KA+E + L
Sbjct: 341 FVRNLANTVTEEI-LEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGE 399
Query: 129 VISVEYALKDDSERDDR 145
I + +A D +R +R
Sbjct: 400 NIEIVFAKPPDQKRKER 416
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 119 (46.9 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 40/145 (27%), Positives = 70/145 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRR-LSVEWARGERGRHRDGSKSMANQRPTKT 67
G+A++ F+ ADA R LD + F + R + + W++ + G + G + N
Sbjct: 53 GYAYINFQQP---ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSG---VGN------ 100
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI------RRNFAFVQFETQEEATKALESTD 121
+F+ N D + + F +GN+L ++ R + FV FETQE A +A+++ +
Sbjct: 101 VFIKNLDE-SIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMN 159
Query: 122 RSKLVDRVISVEYALKDDSERDDRY 146
L DR + V + K ER+ Y
Sbjct: 160 GMLLNDRKVFVGH-FKSRRERELEY 183
Score = 36 (17.7 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 190 PVYDQRRSPDHGRHRSPVPVY 210
PV R++P H+S P Y
Sbjct: 424 PVAPVRQAPQWTSHQSRPPQY 444
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 118 (46.6 bits), Expect = 0.00017, P = 0.00017
Identities = 40/145 (27%), Positives = 70/145 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRR-LSVEWARGERGRHRDGSKSMANQRPTKT 67
G+A++ F+ ADA R LD + F + R + + W++ + G + G + N
Sbjct: 53 GYAYINFQQP---ADAERALDTMNFEVIKGRPVRIMWSQRDPGLRKSG---VGN------ 100
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI------RRNFAFVQFETQEEATKALESTD 121
+F+ N D + + F +GN+L ++ R FV FETQE AT+A+++ +
Sbjct: 101 VFIKNLDD-SIDNKALYDTFSAFGNILSCKVVCDENGSRGHGFVHFETQEAATRAIQTMN 159
Query: 122 RSKLVDRVISVEYALKDDSERDDRY 146
L DR + V + K ER+ +
Sbjct: 160 GMLLNDRKVFVGH-FKSRKEREAEF 183
>ZFIN|ZDB-GENE-071005-2 [details] [associations]
symbol:srsf3b "serine/arginine-rich splicing factor
3b" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-071005-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 OMA:SPPPRRX OrthoDB:EOG4VDQ12
HOVERGEN:HBG104956 EMBL:CU062631 IPI:IPI00785666 UniGene:Dr.75959
SMR:A5WWG4 Ensembl:ENSDART00000106636 Ensembl:ENSDART00000135829
Ensembl:ENSDART00000144309 Ensembl:ENSDART00000145685
Uniprot:A5WWG4
Length = 164
Score = 106 (42.4 bits), Expect = 0.00017, P = 0.00017
Identities = 39/121 (32%), Positives = 53/121 (43%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV FED RDA DA+R LD R R VE + GE+ G N+RP
Sbjct: 46 GFAFVEFEDPRDATDAVRELDGRTLCGCRVR--VELSNGEKRTRSRGPPPSWNRRPRDD- 102
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALE-STDRSKLVD 127
+ P + R +R F + R RR + E + +++ S RS+ D
Sbjct: 103 YRRRSSPPQRRRSPRRRSFSRSRSRSFSRERRRERSLSRERNHKPSRSFSRSRSRSRSND 162
Query: 128 R 128
R
Sbjct: 163 R 163
>ZFIN|ZDB-GENE-040718-354 [details] [associations]
symbol:srsf5b "serine/arginine-rich splicing factor
5b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-354 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 OMA:RKSYTRS EMBL:AL928866
EMBL:BC075982 IPI:IPI00512023 RefSeq:NP_001002610.1
UniGene:Dr.80489 STRING:Q6DHJ0 Ensembl:ENSDART00000023580
GeneID:436883 KEGG:dre:436883 CTD:436883 InParanoid:Q6DHJ0
NextBio:20831311 Uniprot:Q6DHJ0
Length = 285
Score = 113 (44.8 bits), Expect = 0.00018, P = 0.00018
Identities = 20/68 (29%), Positives = 41/68 (60%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+F+ +A A+ D +L +
Sbjct: 6 IFIGRLNP-SAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDAEDAVYELDGKELCN 64
Query: 128 RVISVEYA 135
+++E+A
Sbjct: 65 ERVTIEHA 72
>FB|FBgn0024542 [details] [associations]
symbol:Neos "Neosin" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 InterPro:IPR004154 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 SUPFAM:SSF52954
Gene3D:3.40.50.800 eggNOG:NOG147049 EMBL:AF160904 UniGene:Dm.869
ProteinModelPortal:Q7KLX0 PaxDb:Q7KLX0 PRIDE:Q7KLX0
FlyBase:FBgn0024542 InParanoid:Q7KLX0 OrthoDB:EOG49GHZP
ArrayExpress:Q7KLX0 Bgee:Q7KLX0 Uniprot:Q7KLX0
Length = 383
Score = 115 (45.5 bits), Expect = 0.00018, P = 0.00018
Identities = 33/105 (31%), Positives = 56/105 (53%)
Query: 33 FGYD-RRRLSVEWAR-GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 90
FG+ R+L + + G G + ++A R +F+ N P+ TRE ++ +PY
Sbjct: 1 FGFVCSRKLQISMSDPGSAGYNITKDPALAKSR----IFLGNL-PVCTRE-ELVSICQPY 54
Query: 91 GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
G VL +++N+ FVQFET+E A KA + +S +++V A
Sbjct: 55 GKVLGSMVQKNYGFVQFETEELANKAASALHKSTFKQNMLTVRNA 99
>UNIPROTKB|E1BV69 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:YPGTKLT EMBL:AADN02016545 IPI:IPI00595715
ProteinModelPortal:E1BV69 Ensembl:ENSGALT00000015094 Uniprot:E1BV69
Length = 467
Score = 116 (45.9 bits), Expect = 0.00018, P = 0.00018
Identities = 47/146 (32%), Positives = 69/146 (47%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L F R + V+WA E+ D +++M R K L
Sbjct: 185 GFAFVEYESHRAAAMARRRLLPGTFQLWGRAVQVDWACPEK--EVD-AETM---RRVKVL 238
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK F + + R++ R++AFV F +E+A A+ S K +
Sbjct: 239 YVRNL-MISTTEDTIKAEFNKFKPRVVERVKKLRDYAFVHFYNREDAVAAM-SIMNGKCI 296
Query: 127 DRVISVEYALKDDSERDDRYDSPRRG 152
D S+E L ++ + G
Sbjct: 297 DGA-SIEVTLAKPVNKESTWKQHLNG 321
>UNIPROTKB|F6XIK8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:10492 KO:K13160 OMA:GNMATEH Ensembl:ENSCAFT00000004869
EMBL:AAEX03008501 RefSeq:XP_003431698.1 ProteinModelPortal:F6XIK8
GeneID:474986 KEGG:cfa:474986 Uniprot:F6XIK8
Length = 562
Score = 117 (46.2 bits), Expect = 0.00019, P = 0.00019
Identities = 40/137 (29%), Positives = 66/137 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + +VEWA + D + MA K L
Sbjct: 287 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWA--DPIEDPD-PEVMAK---VKVL 340
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AF+ F+ ++ A KA+E + L
Sbjct: 341 FVRNLANTVTEEI-LEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGE 399
Query: 129 VISVEYALKDDSERDDR 145
I + +A D +R +R
Sbjct: 400 NIEIVFAKPPDQKRKER 416
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 109 (43.4 bits), Expect = 0.00019, P = 0.00019
Identities = 36/136 (26%), Positives = 63/136 (46%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+AFV+FE A AI ++ + DR+ V R + + R+ A + +
Sbjct: 52 GYAFVHFETQEAADKAIEKMNGMLLN-DRK---VFVGRFKSRKEREAELG-AKAKEFTNV 106
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTD 121
++ NF + +K F +G L V++ R+ F FV +E E+A KA+E +
Sbjct: 107 YIKNFGE-EVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 165
Query: 122 RSKLVDRVISVEYALK 137
++ ++I V A K
Sbjct: 166 GKEISGKIIFVGRAQK 181
>UNIPROTKB|D4A1W5 [details] [associations]
symbol:Rbm4 "Protein Rbm4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1306891
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 IPI:IPI00371612
ProteinModelPortal:D4A1W5 Ensembl:ENSRNOT00000026611
ArrayExpress:D4A1W5 Uniprot:D4A1W5
Length = 361
Score = 109 (43.4 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 37/124 (29%), Positives = 63/124 (50%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
+ FV+ ED A DAIR L + + ++VE ++ +KS A+ TK L
Sbjct: 37 YGFVHIEDKTAAEDAIRNLHH--YKLHGVNINVEASK---------NKSKAS---TK-LH 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N P T + +++ FE YG V+ I +++AFV E E+A +A+ D ++ +
Sbjct: 82 VGNISPTCTNQ-ELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKR 140
Query: 130 ISVE 133
+ V+
Sbjct: 141 MHVQ 144
Score = 41 (19.5 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 10/16 (62%), Positives = 10/16 (62%)
Query: 176 YGRGRSPAYDRYNGPV 191
YGR RSP R GPV
Sbjct: 301 YGRDRSPLR-RATGPV 315
Score = 40 (19.1 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 215 SPDYGRNRSP 224
+P YGR+RSP
Sbjct: 298 TPYYGRDRSP 307
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 94 (38.1 bits), Expect = 0.00020, P = 0.00020
Identities = 33/100 (33%), Positives = 46/100 (46%)
Query: 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEAT 114
RP K LF+ + T E+ ++ F YG ++ V + R FAFV FE+ +A
Sbjct: 6 RPGK-LFIGGLNT-ETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 115 KALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGY 154
A + L + I VE A K E + Y SPR GY
Sbjct: 64 DAARDMNGKSLDGKAIKVEQATKPSFE--NVYLSPRDDGY 101
>UNIPROTKB|J3QRR5 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 ProteinModelPortal:J3QRR5
Ensembl:ENST00000578778 Uniprot:J3QRR5
Length = 155
Score = 104 (41.7 bits), Expect = 0.00021, P = 0.00021
Identities = 35/116 (30%), Positives = 57/116 (49%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-L 68
+ FV+ ED A DAIR L + Y +++ + + SK N+ T T L
Sbjct: 37 YGFVHIEDKTAAEDAIRNLHH----YKLHGVNI---------NVEASK---NKSKTSTKL 80
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
V N P T ++++ FE YG V+ I +++AFV E E+A +A+ D ++
Sbjct: 81 HVGNISPTCTN-KELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTE 135
>UNIPROTKB|O60506 [details] [associations]
symbol:SYNCRIP "Heterogeneous nuclear ribonucleoprotein Q"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071204 "histone pre-mRNA 3'end processing
complex" evidence=ISS] [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IDA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IMP] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0017148 "negative regulation of translation"
evidence=IDA;IMP] [GO:0071346 "cellular response to
interferon-gamma" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0005634 "nucleus" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005783 GO:GO:0019048 GO:GO:0005654 GO:GO:0017148
GO:GO:0000166 EMBL:CH471051 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0071346 GO:GO:0000398 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204
EMBL:AF155568 EMBL:AF037448 EMBL:AY034481 EMBL:AY034482
EMBL:AY034483 EMBL:AK222776 EMBL:AL136082 EMBL:BC015575
EMBL:BC032643 EMBL:BC040844 IPI:IPI00018140 IPI:IPI00402182
IPI:IPI00402183 IPI:IPI00402184 IPI:IPI00402185
RefSeq:NP_001153145.1 RefSeq:NP_001153146.1 RefSeq:NP_001153147.1
RefSeq:NP_001153148.1 RefSeq:NP_001153149.1 RefSeq:NP_001240700.1
RefSeq:NP_006363.4 UniGene:Hs.571177 PDB:2DGU PDBsum:2DGU
ProteinModelPortal:O60506 SMR:O60506 IntAct:O60506
MINT:MINT-2796763 STRING:O60506 PhosphoSite:O60506 PaxDb:O60506
PRIDE:O60506 DNASU:10492 Ensembl:ENST00000355238
Ensembl:ENST00000369622 GeneID:10492 KEGG:hsa:10492 UCSC:uc003pku.3
UCSC:uc003pkv.3 UCSC:uc003pkw.3 UCSC:uc003pkx.3 UCSC:uc003pkz.2
CTD:10492 GeneCards:GC06M086267 HGNC:HGNC:16918 HPA:CAB010895
neXtProt:NX_O60506 PharmGKB:PA134985065 InParanoid:O60506 KO:K13160
OMA:GNMATEH OrthoDB:EOG4FN4HM PhylomeDB:O60506 ChiTaRS:SYNCRIP
EvolutionaryTrace:O60506 GenomeRNAi:10492 NextBio:39814
ArrayExpress:O60506 Bgee:O60506 CleanEx:HS_SYNCRIP
Genevestigator:O60506 GermOnline:ENSG00000135316 Uniprot:O60506
Length = 623
Score = 117 (46.2 bits), Expect = 0.00021, P = 0.00021
Identities = 40/137 (29%), Positives = 66/137 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + +VEWA + D + MA K L
Sbjct: 287 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWA--DPIEDPD-PEVMAK---VKVL 340
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AF+ F+ ++ A KA+E + L
Sbjct: 341 FVRNLANTVTEEI-LEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGE 399
Query: 129 VISVEYALKDDSERDDR 145
I + +A D +R +R
Sbjct: 400 NIEIVFAKPPDQKRKER 416
>UNIPROTKB|F2Z5D4 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:CU076072 Ensembl:ENSSSCT00000004748 Uniprot:F2Z5D4
Length = 627
Score = 117 (46.2 bits), Expect = 0.00022, P = 0.00022
Identities = 40/137 (29%), Positives = 66/137 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + +VEWA + D + MA K L
Sbjct: 291 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWA--DPIEDPD-PEVMAK---VKVL 344
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AF+ F+ ++ A KA+E + L
Sbjct: 345 FVRNLANTVTEEI-LEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGE 403
Query: 129 VISVEYALKDDSERDDR 145
I + +A D +R +R
Sbjct: 404 NIEIVFAKPPDQKRKER 420
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 117 (46.2 bits), Expect = 0.00022, P = 0.00022
Identities = 41/137 (29%), Positives = 68/137 (49%)
Query: 9 GFAFVYFEDDRDAAD-AIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
G+AFV+FE +DAAD AI ++ + DR+ V R + + R+ A +
Sbjct: 140 GYAFVHFET-QDAADRAIEKMNGMLLN-DRK---VFVGRFKSRKEREAEMG-AKAKEFTN 193
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALEST 120
+++ NF +R +K F+ YG L V++ R F FV +E E+A KA+E
Sbjct: 194 VYIKNFGDDMDDQR-LKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEM 252
Query: 121 DRSKLVDRVISVEYALK 137
+ ++L + + V A K
Sbjct: 253 NGTELNGKTVFVGRAQK 269
>UNIPROTKB|F1MCT8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:DAAA02026516 EMBL:DAAA02026515 IPI:IPI00721347
Ensembl:ENSBTAT00000008774 Uniprot:F1MCT8
Length = 638
Score = 117 (46.2 bits), Expect = 0.00022, P = 0.00022
Identities = 40/137 (29%), Positives = 66/137 (48%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + +VEWA + D + MA K L
Sbjct: 302 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWA--DPIEDPD-PEVMAK---VKVL 355
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AF+ F+ ++ A KA+E + L
Sbjct: 356 FVRNLANTVTEEI-LEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGE 414
Query: 129 VISVEYALKDDSERDDR 145
I + +A D +R +R
Sbjct: 415 NIEIVFAKPPDQKRKER 431
>UNIPROTKB|Q3MHX3 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9913 "Bos
taurus" [GO:0097167 "circadian regulation of translation"
evidence=ISS] [GO:0002192 "IRES-dependent translational initiation"
evidence=ISS] [GO:0002190 "cap-independent translational
initiation" evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0046822
"regulation of nucleocytoplasmic transport" evidence=ISS]
[GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0016607
"nuclear speck" evidence=ISS] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0051403 "stress-activated MAPK cascade"
evidence=ISS] [GO:0051149 "positive regulation of muscle cell
differentiation" evidence=ISS] [GO:0045947 "negative regulation of
translational initiation" evidence=ISS] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0032055 "negative regulation of translation in
response to stress" evidence=ISS] [GO:0017148 "negative regulation
of translation" evidence=ISS] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0030154 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0045947 GO:GO:0016607 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149
GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 KO:K13187
HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
EMBL:BT030489 EMBL:BC104570 IPI:IPI00689636 RefSeq:NP_001070478.1
UniGene:Bt.20177 ProteinModelPortal:Q3MHX3 SMR:Q3MHX3
Ensembl:ENSBTAT00000000541 GeneID:767937 KEGG:bta:767937 CTD:5936
InParanoid:Q3MHX3 OMA:IPTIDTC NextBio:20918294 GO:GO:0097158
GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 Uniprot:Q3MHX3
Length = 362
Score = 106 (42.4 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 36/125 (28%), Positives = 61/125 (48%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-L 68
+ FV+ ED A DAIR L + Y +++ + + SK N+ T T L
Sbjct: 37 YGFVHIEDKTAAEDAIRNLHH----YKLHGVNI---------NVEASK---NKSKTSTKL 80
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
V N P T ++++ FE YG V+ I +++AFV E E+A +A+ D ++ +
Sbjct: 81 HVGNISPTCTN-KELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGK 139
Query: 129 VISVE 133
+ V+
Sbjct: 140 RMHVQ 144
Score = 44 (20.5 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 14/48 (29%), Positives = 14/48 (29%)
Query: 144 DRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPV 191
D YD G YGR RSP R GPV
Sbjct: 270 DPYDRHLLPTSGAAAAAAAAAAAAVTAASSSYYGRDRSPLR-RATGPV 316
>UNIPROTKB|E2RS70 [details] [associations]
symbol:RBM4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883
KO:K13187 CTD:5936 OMA:IPTIDTC EMBL:AAEX03011624 RefSeq:XP_852303.1
ProteinModelPortal:E2RS70 Ensembl:ENSCAFT00000019680 GeneID:610648
KEGG:cfa:610648 NextBio:20896200 Uniprot:E2RS70
Length = 365
Score = 106 (42.4 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 36/125 (28%), Positives = 61/125 (48%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-L 68
+ FV+ ED A DAIR L + Y +++ + + SK N+ T T L
Sbjct: 37 YGFVHIEDKTAAEDAIRNLHH----YKLHGVNI---------NVEASK---NKSKTSTKL 80
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
V N P T ++++ FE YG V+ I +++AFV E E+A +A+ D ++ +
Sbjct: 81 HVGNISPTCTN-KELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGK 139
Query: 129 VISVE 133
+ V+
Sbjct: 140 RMHVQ 144
Score = 44 (20.5 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 13/48 (27%), Positives = 14/48 (29%)
Query: 144 DRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPV 191
DR+ P G YGR RSP R PV
Sbjct: 273 DRHLLPTSGAAAATAAAAAAAAAAVTAASTSYYGRDRSPLR-RATAPV 319
>ZFIN|ZDB-GENE-030131-2420 [details] [associations]
symbol:srsf2b "serine/arginine-rich splicing
factor 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2420
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 OrthoDB:EOG4D26RH EMBL:CU463857 EMBL:BC065971
IPI:IPI00484778 UniGene:Dr.77943 SMR:Q6NZT9 STRING:Q6NZT9
Ensembl:ENSDART00000017706 Ensembl:ENSDART00000105586
InParanoid:Q6NZT9 OMA:YVEMESA Uniprot:Q6NZT9
Length = 220
Score = 109 (43.4 bits), Expect = 0.00028, P = 0.00028
Identities = 48/167 (28%), Positives = 66/167 (39%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 128
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAILDGR 83
Query: 129 VISVE---YALKDDSERDD----RYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRS 181
+ V+ Y DS R S GG RH R RS
Sbjct: 84 ELRVQMARYGRPPDSYYGGGGGGRRGSGGGGGSRRHGARRSRSPRRRRRSRSRSRSRSRS 143
Query: 182 PAYDRYN---GPVYDQRRSPDH--GRHRSPVPVYDRRRSPDYGRNRS 223
+ RY+ Y + RS H + +S P R RS R+RS
Sbjct: 144 RSRSRYSRSRSRSYSRSRSKSHTPNKRKSKSPSRSRSRSRSKSRSRS 190
>DICTYBASE|DDB_G0291966 [details] [associations]
symbol:DDB_G0291966 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0291966
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000186 Gene3D:4.10.60.10 OMA:SKISVEW
eggNOG:NOG77895 RefSeq:XP_001134500.1 ProteinModelPortal:Q1ZXB1
EnsemblProtists:DDB0233327 GeneID:8628419 KEGG:ddi:DDB_G0291966
InParanoid:Q1ZXB1 ProtClustDB:CLSZ2846728 Uniprot:Q1ZXB1
Length = 312
Score = 112 (44.5 bits), Expect = 0.00028, P = 0.00028
Identities = 37/152 (24%), Positives = 70/152 (46%)
Query: 76 IRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSKLVDRVIS 131
+ T ++++ HF YG + +++ +AFV+++ + +A AL++ + + L++ IS
Sbjct: 10 VETTQKNLNDHFSKYGTITRNDVKKTNGRCYAFVEYKERRDADDALKALNGTTLLNSKIS 69
Query: 132 VEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPV 191
VE+A + +++ + + G+ + R R RY P
Sbjct: 70 VEWAKGGKNADNNKCFACGQEGHWIKSCPNGGKKRSRDRSLSRSHSRDRRSR--RYRSPS 127
Query: 192 YDQR-RSPDHGRHRSPVPVYDRRRSPDYGRNR 222
+D+R RS D R RS R RS D R+R
Sbjct: 128 WDRRDRSRDRSRDRS------RDRSRDRSRDR 153
>MGI|MGI:1913954 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010628 "positive regulation of gene
expression" evidence=IDA] [GO:0032922 "circadian regulation of gene
expression" evidence=IDA] [GO:0043153 "entrainment of circadian
clock by photoperiod" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 MGI:MGI:1913954
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:BC019488 IPI:IPI00177224
RefSeq:NP_079993.2 UniGene:Mm.396734 ProteinModelPortal:Q8VE92
SMR:Q8VE92 PhosphoSite:Q8VE92 PaxDb:Q8VE92 PRIDE:Q8VE92
Ensembl:ENSMUST00000036744 GeneID:66704 KEGG:mmu:66704
UCSC:uc008gar.1 InParanoid:Q8VE92 NextBio:322415 Bgee:Q8VE92
CleanEx:MM_RBM4B Genevestigator:Q8VE92
GermOnline:ENSMUSG00000033760 Uniprot:Q8VE92
Length = 357
Score = 109 (43.4 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 37/124 (29%), Positives = 63/124 (50%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
+ FV+ ED A DAIR L + + ++VE ++ +KS A+ TK L
Sbjct: 37 YGFVHIEDKTAAEDAIRNLHH--YKLHGVNINVEASK---------NKSKAS---TK-LH 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N P T + +++ FE YG V+ I +++AFV E E+A +A+ D ++ +
Sbjct: 82 VGNISPTCTNQ-ELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKR 140
Query: 130 ISVE 133
+ V+
Sbjct: 141 MHVQ 144
Score = 39 (18.8 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 192 YDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 224
YD+ + G + + S YGR+RSP
Sbjct: 271 YDRHLLQNSGSAATSAAMAAAASSSYYGRDRSP 303
>RGD|1359343 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=ISO;ISS] [GO:0007623 "circadian rhythm"
evidence=ISO;ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA;ISO] [GO:0032922
"circadian regulation of gene expression" evidence=ISO;ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1359343
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747
RefSeq:NP_001007015.2 UniGene:Rn.203522 ProteinModelPortal:Q64LC9
SMR:Q64LC9 IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
Uniprot:Q64LC9
Length = 357
Score = 109 (43.4 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 37/124 (29%), Positives = 63/124 (50%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
+ FV+ ED A DAIR L + + ++VE ++ +KS A+ TK L
Sbjct: 37 YGFVHIEDKTAAEDAIRNLHH--YKLHGVNINVEASK---------NKSKAS---TK-LH 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N P T + +++ FE YG V+ I +++AFV E E+A +A+ D ++ +
Sbjct: 82 VGNISPTCTNQ-ELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKR 140
Query: 130 ISVE 133
+ V+
Sbjct: 141 MHVQ 144
Score = 39 (18.8 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 192 YDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 224
YD+ + G + + S YGR+RSP
Sbjct: 271 YDRHLLQNSGSAATSAAMAAAASSSYYGRDRSP 303
>UNIPROTKB|Q64LC9 [details] [associations]
symbol:Rbm4b "RNA-binding protein 4B" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 RGD:1359343 GO:GO:0006417 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0032922
GO:GO:0010628 Gene3D:4.10.60.10 GO:GO:0043153 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:83759 OMA:VYYNDAY
EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747 RefSeq:NP_001007015.2
UniGene:Rn.203522 ProteinModelPortal:Q64LC9 SMR:Q64LC9
IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
Uniprot:Q64LC9
Length = 357
Score = 109 (43.4 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 37/124 (29%), Positives = 63/124 (50%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
+ FV+ ED A DAIR L + + ++VE ++ +KS A+ TK L
Sbjct: 37 YGFVHIEDKTAAEDAIRNLHH--YKLHGVNINVEASK---------NKSKAS---TK-LH 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N P T + +++ FE YG V+ I +++AFV E E+A +A+ D ++ +
Sbjct: 82 VGNISPTCTNQ-ELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKR 140
Query: 130 ISVE 133
+ V+
Sbjct: 141 MHVQ 144
Score = 39 (18.8 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 192 YDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 224
YD+ + G + + S YGR+RSP
Sbjct: 271 YDRHLLQNSGSAATSAAMAAAASSSYYGRDRSP 303
>CGD|CAL0003843 [details] [associations]
symbol:NPL3 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IGI;ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] [GO:0017148
"negative regulation of translation" evidence=IEA] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0006415 "translational
termination" evidence=IEA] [GO:2000805 "negative regulation of
termination of RNA polymerase II transcription, poly(A)-coupled"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0031370 "eukaryotic initiation factor 4G binding" evidence=IEA]
[GO:0000993 "RNA polymerase II core binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003843 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006406 eggNOG:COG0724
EMBL:AACQ01000092 RefSeq:XP_715038.1 ProteinModelPortal:Q59ZV3
STRING:Q59ZV3 GeneID:3643310 KEGG:cal:CaO19.7238 Uniprot:Q59ZV3
Length = 286
Score = 103 (41.3 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 27/85 (31%), Positives = 47/85 (55%)
Query: 65 TKTLFVINFDPIR---TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
TK LFV P+R TRE +++ HF V+ VR+ +AFV FE +++A +ALE +
Sbjct: 8 TKQLFV---RPLRNDVTRE-EVQDHFSRAAPVVEVRLMEGYAFVTFENEDDAKQALELLN 63
Query: 122 RSKLVDRVISVEYALKDDSERDDRY 146
++ + +E+A + + +Y
Sbjct: 64 DAEFNGEKLQIEFAKERREDTRGKY 88
Score = 43 (20.2 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 22/67 (32%), Positives = 23/67 (34%)
Query: 151 RGGYGRHXXXXXXXXXXXXXXXXXDYG-RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPV 209
RGGY R G RG YDR G YD+ D G
Sbjct: 226 RGGYDRGGFRGGRGGFDRGGFRGGRGGFRGGRGGYDR-GG--YDRDNFNDRGGS------ 276
Query: 210 YDRRRSP 216
YDR RSP
Sbjct: 277 YDRERSP 283
>UNIPROTKB|Q59ZV3 [details] [associations]
symbol:NPL3 "Putative uncharacterized protein NPL3"
species:237561 "Candida albicans SC5314" [GO:0005634 "nucleus"
evidence=IDA] [GO:0006406 "mRNA export from nucleus" evidence=IGI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003843 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006406 eggNOG:COG0724
EMBL:AACQ01000092 RefSeq:XP_715038.1 ProteinModelPortal:Q59ZV3
STRING:Q59ZV3 GeneID:3643310 KEGG:cal:CaO19.7238 Uniprot:Q59ZV3
Length = 286
Score = 103 (41.3 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 27/85 (31%), Positives = 47/85 (55%)
Query: 65 TKTLFVINFDPIR---TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
TK LFV P+R TRE +++ HF V+ VR+ +AFV FE +++A +ALE +
Sbjct: 8 TKQLFV---RPLRNDVTRE-EVQDHFSRAAPVVEVRLMEGYAFVTFENEDDAKQALELLN 63
Query: 122 RSKLVDRVISVEYALKDDSERDDRY 146
++ + +E+A + + +Y
Sbjct: 64 DAEFNGEKLQIEFAKERREDTRGKY 88
Score = 43 (20.2 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 22/67 (32%), Positives = 23/67 (34%)
Query: 151 RGGYGRHXXXXXXXXXXXXXXXXXDYG-RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPV 209
RGGY R G RG YDR G YD+ D G
Sbjct: 226 RGGYDRGGFRGGRGGFDRGGFRGGRGGFRGGRGGYDR-GG--YDRDNFNDRGGS------ 276
Query: 210 YDRRRSP 216
YDR RSP
Sbjct: 277 YDRERSP 283
>CGD|CAL0004922 [details] [associations]
symbol:orf19.6766 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030684 "preribosome" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004922 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719745.1 RefSeq:XP_719862.1 ProteinModelPortal:Q5ADS5
STRING:Q5ADS5 GeneID:3638469 GeneID:3638574 KEGG:cal:CaO19.14058
KEGG:cal:CaO19.6766 Uniprot:Q5ADS5
Length = 396
Score = 113 (44.8 bits), Expect = 0.00032, P = 0.00032
Identities = 50/166 (30%), Positives = 78/166 (46%)
Query: 9 GFAFVYFEDDRDAADAIRGL-DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR---- 63
GFA+V + I GL ++I G R+L ++ A GR SKS A Q
Sbjct: 154 GFAYVDVPSSSHV-ETIVGLSESILNG---RKLLIKDANSFEGRPEQ-SKSDATQSGGIN 208
Query: 64 ----PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQE 111
P++ LFV N T E ++ HF G ++ +R+ + FAF+ F+ +E
Sbjct: 209 SSNPPSRILFVGNLS-FDTTEDLLEEHFRHCGEIVKIRMATFQDTGKCKGFAFIDFKDEE 267
Query: 112 EATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRH 157
AT AL+S L++R + +EY +D S+R + R +G H
Sbjct: 268 GATTALKSKLTKMLINRKLRMEYG-EDRSKRRPK----RANDFGDH 308
>UNIPROTKB|Q5ADS5 [details] [associations]
symbol:NOP13 "Putative uncharacterized protein NOP13"
species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004922 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719745.1 RefSeq:XP_719862.1 ProteinModelPortal:Q5ADS5
STRING:Q5ADS5 GeneID:3638469 GeneID:3638574 KEGG:cal:CaO19.14058
KEGG:cal:CaO19.6766 Uniprot:Q5ADS5
Length = 396
Score = 113 (44.8 bits), Expect = 0.00032, P = 0.00032
Identities = 50/166 (30%), Positives = 78/166 (46%)
Query: 9 GFAFVYFEDDRDAADAIRGL-DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR---- 63
GFA+V + I GL ++I G R+L ++ A GR SKS A Q
Sbjct: 154 GFAYVDVPSSSHV-ETIVGLSESILNG---RKLLIKDANSFEGRPEQ-SKSDATQSGGIN 208
Query: 64 ----PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQE 111
P++ LFV N T E ++ HF G ++ +R+ + FAF+ F+ +E
Sbjct: 209 SSNPPSRILFVGNLS-FDTTEDLLEEHFRHCGEIVKIRMATFQDTGKCKGFAFIDFKDEE 267
Query: 112 EATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRH 157
AT AL+S L++R + +EY +D S+R + R +G H
Sbjct: 268 GATTALKSKLTKMLINRKLRMEYG-EDRSKRRPK----RANDFGDH 308
>SGD|S000005119 [details] [associations]
symbol:NOP13 "Nucleolar protein found in preribosomal
complexes" species:4932 "Saccharomyces cerevisiae" [GO:0030684
"preribosome" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000005119 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:BK006947 GO:GO:0003723 eggNOG:COG0724
GO:GO:0030684 EMBL:Z71451 PIR:S63130 RefSeq:NP_014224.2
ProteinModelPortal:P53883 SMR:P53883 DIP:DIP-4331N IntAct:P53883
MINT:MINT-479067 STRING:P53883 PaxDb:P53883 PeptideAtlas:P53883
EnsemblFungi:YNL175C GeneID:855547 KEGG:sce:YNL175C CYGD:YNL175c
HOGENOM:HOG000193653 OMA:KNPPSRI OrthoDB:EOG47DDRF NextBio:979619
Genevestigator:P53883 GermOnline:YNL175C Uniprot:P53883
Length = 403
Score = 113 (44.8 bits), Expect = 0.00033, P = 0.00033
Identities = 36/146 (24%), Positives = 74/146 (50%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR-HRDGSKSMANQRPTKT 67
GF +++F++ + A+ L + R + ++ + GR +D +M+ P++
Sbjct: 184 GFCYMFFKNV-EQMKAVLELSESHL--NGRNMLIKDSENYSGRPDKDDLVAMSKNPPSRI 240
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALES 119
LFV N T + +++HF+ G+++ +R+ + FAF+ F+ +E +T AL+
Sbjct: 241 LFVGNLSFDVTDDL-LRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNALKD 299
Query: 120 TDRSKLVDRVISVEYALKDDSERDDR 145
K+ R + +EY +D S+R R
Sbjct: 300 KSCRKIAGRPLRMEYG-EDRSKRQVR 324
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 115 (45.5 bits), Expect = 0.00033, P = 0.00033
Identities = 54/229 (23%), Positives = 88/229 (38%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRH--RDGSKSMANQRPTK 66
GF FV +E DA A+ L++ ++ + + ER H + ++ ++ K
Sbjct: 260 GFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNER-MHVLKKQYEAYRLEKMAK 318
Query: 67 ----TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATK 115
LFV N D E+ ++ F PYG + ++ R F FV F T EEATK
Sbjct: 319 YQGVNLFVKNLDDSVDDEK-LEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATK 377
Query: 116 ALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXD 175
A+ ++ + + + V A + D R + R+
Sbjct: 378 AITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAAGMPGQF 437
Query: 176 -----YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYG 219
YG P +NGP Q+ +P G ++ +P R P YG
Sbjct: 438 MPPMFYGV-MPPRGVPFNGP-NPQQMNPMGGMPKNGMPP-QFRNGPVYG 483
>UNIPROTKB|F1PEZ0 [details] [associations]
symbol:SRSF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AAEX03001696
Ensembl:ENSCAFT00000018513 OMA:WESKTHI Uniprot:F1PEZ0
Length = 479
Score = 114 (45.2 bits), Expect = 0.00033, P = 0.00033
Identities = 60/234 (25%), Positives = 95/234 (40%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDR--RRLSVEWARGER--GRHRDGSKSMANQR-- 63
+ FV F+D RDA DA+ L+ G D R+ VE ARG R G + G +R
Sbjct: 16 YGFVEFDDLRDADDAVYELN----GKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSG 71
Query: 64 ------PTKTLFVINFDPIRTR--ERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEE 112
PT+T + + + + +R +D+K + G V + + R+N ++F + +
Sbjct: 72 RDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSD 131
Query: 113 ATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXX 172
+ALE D +++ R I + K S R Y R R
Sbjct: 132 MKRALEKLDGTEVNGRKIRLVED-KPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSS 190
Query: 173 XXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSP---DYGRNRS 223
+ + RS + R + RS R RS ++ RSP D R+RS
Sbjct: 191 KSSHSKSRSRS--RSGSHSRSKSRSRSQSRSRSKK---EKSRSPSKDDKSRSRS 239
>UNIPROTKB|G3V251 [details] [associations]
symbol:HNRNPC "Heterogeneous nuclear ribonucleoproteins
C1/C2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL135744 HGNC:HGNC:5035 ChiTaRS:HNRNPC
ProteinModelPortal:G3V251 SMR:G3V251 Ensembl:ENST00000554891
ArrayExpress:G3V251 Bgee:G3V251 Uniprot:G3V251
Length = 126
Score = 92 (37.4 bits), Expect = 0.00034, P = 0.00034
Identities = 17/75 (22%), Positives = 37/75 (49%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ N + + ++ D++ F YG ++ + + FAFVQ+ + A A+ D +
Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAG 77
Query: 128 RVISVEYALKDDSER 142
+V+ + A + R
Sbjct: 78 QVLDINLAAEPKVNR 92
>UNIPROTKB|G3V3K6 [details] [associations]
symbol:HNRNPC "Heterogeneous nuclear ribonucleoproteins
C1/C2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL135744 HGNC:HGNC:5035 ChiTaRS:HNRNPC
ProteinModelPortal:G3V3K6 SMR:G3V3K6 Ensembl:ENST00000556226
ArrayExpress:G3V3K6 Bgee:G3V3K6 Uniprot:G3V3K6
Length = 121
Score = 92 (37.4 bits), Expect = 0.00034, P = 0.00034
Identities = 17/75 (22%), Positives = 37/75 (49%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ N + + ++ D++ F YG ++ + + FAFVQ+ + A A+ D +
Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAG 77
Query: 128 RVISVEYALKDDSER 142
+V+ + A + R
Sbjct: 78 QVLDINLAAEPKVNR 92
>UNIPROTKB|G3V5X6 [details] [associations]
symbol:HNRNPC "Heterogeneous nuclear ribonucleoproteins
C1/C2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL135744 HGNC:HGNC:5035 ChiTaRS:HNRNPC
ProteinModelPortal:G3V5X6 SMR:G3V5X6 Ensembl:ENST00000555176
ArrayExpress:G3V5X6 Bgee:G3V5X6 Uniprot:G3V5X6
Length = 117
Score = 92 (37.4 bits), Expect = 0.00034, P = 0.00034
Identities = 17/75 (22%), Positives = 37/75 (49%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ N + + ++ D++ F YG ++ + + FAFVQ+ + A A+ D +
Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAG 77
Query: 128 RVISVEYALKDDSER 142
+V+ + A + R
Sbjct: 78 QVLDINLAAEPKVNR 92
>TAIR|locus:2089094 [details] [associations]
symbol:AT3G27700 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AB018114 EMBL:AY062574 EMBL:BT000780
EMBL:AK229929 IPI:IPI00547344 RefSeq:NP_189407.2 RefSeq:NP_851008.1
UniGene:At.8026 ProteinModelPortal:Q9LVX1 SMR:Q9LVX1 PaxDb:Q9LVX1
PRIDE:Q9LVX1 EnsemblPlants:AT3G27700.1 EnsemblPlants:AT3G27700.2
GeneID:822392 KEGG:ath:AT3G27700 TAIR:At3g27700 eggNOG:NOG280405
HOGENOM:HOG000078746 InParanoid:Q9LVX1 KO:K13192 OMA:DQPLWNN
PhylomeDB:Q9LVX1 ProtClustDB:CLSN2690575 Genevestigator:Q9LVX1
Uniprot:Q9LVX1
Length = 908
Score = 117 (46.2 bits), Expect = 0.00034, P = 0.00034
Identities = 30/80 (37%), Positives = 47/80 (58%)
Query: 62 QRPTKTLFVINFDPIRTRERD-IKRHFEPYGNVL--HVRIRRNFAFVQFETQEEATKALE 118
Q+ +TLFV N+ P + RD I HF+ +G V+ H+ + AFVQF +EEA AL
Sbjct: 434 QKAMRTLFV-NYVPHESNRRDLILAHFQKFGKVIDIHIPVNSERAFVQFSKREEAESALR 492
Query: 119 STDRSKLVDRVISVEYALKD 138
+ D + + +R I + +A +D
Sbjct: 493 APD-AVMGNRFIKLWWANRD 511
>UNIPROTKB|Q9BRL6 [details] [associations]
symbol:SRSF8 "Serine/arginine-rich splicing factor 8"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 EMBL:CH471065
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K12891 OrthoDB:EOG4D26RH EMBL:AF031165
EMBL:AF031166 EMBL:AK023379 EMBL:AK312514 EMBL:BC057783
IPI:IPI00477842 IPI:IPI00856075 RefSeq:NP_115285.1
UniGene:Hs.476680 PDB:2DNM PDBsum:2DNM ProteinModelPortal:Q9BRL6
SMR:Q9BRL6 STRING:Q9BRL6 PhosphoSite:Q9BRL6 DMDM:74761217
PaxDb:Q9BRL6 PRIDE:Q9BRL6 GeneID:10929 KEGG:hsa:10929
UCSC:uc001pff.3 CTD:10929 GeneCards:GC11P094801 H-InvDB:HIX0010038
HGNC:HGNC:16988 MIM:603269 neXtProt:NX_Q9BRL6 PharmGKB:PA165543687
EvolutionaryTrace:Q9BRL6 GenomeRNAi:10929 NextBio:41519
CleanEx:HS_SFRS2B Genevestigator:Q9BRL6 Uniprot:Q9BRL6
Length = 282
Score = 110 (43.8 bits), Expect = 0.00039, P = 0.00039
Identities = 54/173 (31%), Positives = 70/173 (40%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNV--------LHVRIRRNFAFVQFETQEEATKALE 118
TL V N RT ++R FE YG V H + R FAFV+F + +A A
Sbjct: 15 TLKVDNLT-YRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEA 73
Query: 119 STDRSKLVDRVISVE---YALKD--DSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXX 173
+ D ++L R + V+ Y +D S + + R GGYGR
Sbjct: 74 AMDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHR 133
Query: 174 XDYGRG----RSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNR 222
RG RS + RY G Y RSP RSP RSP Y R+R
Sbjct: 134 SR-SRGPSCSRSRSRSRYRGSRYS--RSP---YSRSPYSRSRYSRSP-YSRSR 179
>ZFIN|ZDB-GENE-040426-2824 [details] [associations]
symbol:srsf6a "serine/arginine-rich splicing
factor 6a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-2824 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
EMBL:AL954866 IPI:IPI00931275 Ensembl:ENSDART00000020251
ArrayExpress:E7FFF7 Bgee:E7FFF7 Uniprot:E7FFF7
Length = 379
Score = 112 (44.5 bits), Expect = 0.00040, P = 0.00040
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 79 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138
RE+DI+R F YG +L V ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 14 REKDIQRFFSGYGKLLEVDLKNGYGFVEFEDTRDADDAVYELNGKELCGERVMVEHARGP 73
Query: 139 DSERDDRYDSPRRGGYG 155
+RD Y GG G
Sbjct: 74 RRDRDS-YGGGGGGGGG 89
Score = 78 (32.5 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 22/46 (47%), Positives = 27/46 (58%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRD 54
G+ FV FED RDA DA+ L+ +R + VE ARG R R RD
Sbjct: 36 GYGFVEFEDTRDADDAVYELNGKELCGER--VMVEHARGPR-RDRD 78
Score = 72 (30.4 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 39/183 (21%), Positives = 61/183 (33%)
Query: 45 ARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV---RIRRN 101
+R GR + G R L V N R +D+K G V + + R N
Sbjct: 97 SRSRTGRDKYGPPVRTEYR----LIVENLSS-RCSWQDLKDFMRQAGEVTYADAHKERAN 151
Query: 102 FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXX 161
++F + + +ALE D + + R I + ++D R Y R R
Sbjct: 152 EGVIEFRSYSDMRRALEKLDGTDINGRKIRL---VEDKPRRRRSYSGSRSRSRSRRRSRS 208
Query: 162 XXXXXXXXXXXXXDYGRGRSPAY-DRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGR 220
R RS + R + +S R +SP R + R
Sbjct: 209 RSRRSSRSRSNSRSRSRSRSRRHRSRSRSGRRSRSKSGHKSRSKSPSSKSRSRNRKSHSR 268
Query: 221 NRS 223
+RS
Sbjct: 269 SRS 271
>ZFIN|ZDB-GENE-040426-2455 [details] [associations]
symbol:rbm14b "RNA binding motif protein 14b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-040426-2455 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF57756 HSSP:P19339
KO:K13189 HOVERGEN:HBG062132 EMBL:BC056604 EMBL:BC068361
IPI:IPI00492284 RefSeq:NP_997973.1 UniGene:Dr.132507 GeneID:402858
KEGG:dre:402858 CTD:402858 InParanoid:Q6NV05 NextBio:20816684
Uniprot:Q6NV05
Length = 556
Score = 114 (45.2 bits), Expect = 0.00041, P = 0.00041
Identities = 43/133 (32%), Positives = 66/133 (49%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
FAFV+ + + A AIR L+ F R L VE +RG R H TK +F
Sbjct: 42 FAFVHLQGEGAAERAIRELNGREF--KGRNLVVEESRG-RPLHS-----------TK-VF 86
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N + T E D++ F+ +G VL + +AFV E +E+A +A+E+ + R
Sbjct: 87 VGNLSSMCTTE-DLQELFQTFGKVLECDKVKGYAFVHMENKEDALQAIEALHGTSFKGRP 145
Query: 130 ISVEYALKDDSER 142
+SVE + S++
Sbjct: 146 LSVELSKVQPSKQ 158
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 111 (44.1 bits), Expect = 0.00042, P = 0.00042
Identities = 58/230 (25%), Positives = 88/230 (38%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR-PTKT 67
GF F+ F +DAA + LD RL GR D K+MA ++ P K
Sbjct: 111 GFGFILF---KDAASVEKVLDQ-----KEHRLD--------GRVIDPKKAMAMKKDPVKK 154
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALES 119
+FV +P E I+ +F +G + + + RR F F+ F+ +E K LE
Sbjct: 155 IFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 214
Query: 120 TDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRG 179
+ + ++ A + + +Y S RG R + G G
Sbjct: 215 KFHTVSGSKC-EIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYG 273
Query: 180 RSPAYDRYN-GPVYDQRRSPDHGRHR-SPVPVYDRRRSPDYGRNRSPNFG 227
Y +N G Y Q P +G + SP Y DY + S N+G
Sbjct: 274 N---Y--WNQGYGYQQGYGPGYGGYDYSPYGYYGYGPGYDYSQG-STNYG 317
>TAIR|locus:2046638 [details] [associations]
symbol:RSZ22a "RS-containing zinc finger protein 22a"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006954 Gene3D:4.10.60.10
HSSP:P19339 HOGENOM:HOG000276234 eggNOG:NOG315521 KO:K12896
EMBL:AK117883 EMBL:BT005216 IPI:IPI00534944 PIR:E84638
RefSeq:NP_180035.1 UniGene:At.39134 ProteinModelPortal:Q9SJA6
SMR:Q9SJA6 IntAct:Q9SJA6 STRING:Q9SJA6 PaxDb:Q9SJA6 PRIDE:Q9SJA6
EnsemblPlants:AT2G24590.1 GeneID:816995 KEGG:ath:AT2G24590
TAIR:At2g24590 InParanoid:Q9SJA6 OMA:EELPYAN PhylomeDB:Q9SJA6
ProtClustDB:CLSN2683045 Genevestigator:Q9SJA6 Uniprot:Q9SJA6
Length = 196
Score = 77 (32.2 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN---FAFVQFETQEEATKALESTD 121
++V N DP R ER+++ F +G + V + R +AF+ FE +A A+ D
Sbjct: 4 VYVGNLDP-RVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVD 59
Score = 74 (31.1 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 20/47 (42%), Positives = 25/47 (53%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDG 55
G+AF+ FED RDA DAIR +D G+ + G RG R G
Sbjct: 39 GYAFLDFEDSRDARDAIREVDG-KNGWRVEQSHNRGGGGGRGGGRGG 84
Score = 67 (28.6 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 22/49 (44%), Positives = 27/49 (55%)
Query: 177 GRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 225
GR RS + R + P Y R+SP +G RS P R RSP R RSP+
Sbjct: 119 GRRRSRSRSR-SPPRY--RKSPTYGGRRSYSP---RARSPPPPRRRSPS 161
>WB|WBGene00004705 [details] [associations]
symbol:rsp-8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0002009 GO:GO:0040007 GO:GO:0040010
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0048477 GO:GO:0003723 GO:GO:0040035
GO:GO:0000398 GeneTree:ENSGT00700000104309 HSSP:Q14103 KO:K12897
eggNOG:NOG297815 EMBL:Z92826 GeneID:176613 KEGG:cel:CELE_C18D11.4
CTD:176613 PIR:T19389 RefSeq:NP_001255142.1
ProteinModelPortal:Q9XTZ2 SMR:Q9XTZ2 DIP:DIP-26572N
MINT:MINT-1084022 STRING:Q9XTZ2 PaxDb:Q9XTZ2
EnsemblMetazoa:C18D11.4a.1 EnsemblMetazoa:C18D11.4a.2
UCSC:C18D11.4.1 WormBase:C18D11.4a InParanoid:Q9XTZ2 OMA:RENPQPS
NextBio:893300 Uniprot:Q9XTZ2
Length = 309
Score = 97 (39.2 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 33/117 (28%), Positives = 51/117 (43%)
Query: 47 GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------- 98
G GR R+ N +P+K L V N T E+D++ F +G + +
Sbjct: 57 GGGGRGRNQQYDRENPQPSKCLGVFNLSSYTT-EKDLRDVFGEFGEINKCDLVYDRPSGN 115
Query: 99 RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL--KDDSERDDRYDSPRRGG 153
R F F+ F E+AT A + + L I V+++L + S +Y RRGG
Sbjct: 116 SRGFGFIYFNLIEDATAARDKLCNTDLDGHKIRVDFSLTKRGHSPTPGQYMGDRRGG 172
Score = 50 (22.7 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 25/86 (29%), Positives = 28/86 (32%)
Query: 144 DRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGR--GRSPAYDRYNGPVYDQRRSPDHG 201
DRY R GG G Y R G DR + D R+ G
Sbjct: 221 DRYGGDRYGGGGGRRGSPDRRGGFRSGGGGGGYMRSGGGGGGPDRRDHR--DNDRNGGGG 278
Query: 202 RHRSPVPVYDRRRSPDYGRNRSPNFG 227
HR P + RRR YG S G
Sbjct: 279 GHRPYDPSF-RRRVESYGSGNSGGGG 303
>UNIPROTKB|K7EP16 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 Gene3D:3.30.70.330
EMBL:AC020931 PANTHER:PTHR10352 HGNC:HGNC:3274
Ensembl:ENST00000593054 Uniprot:K7EP16
Length = 118
Score = 91 (37.1 bits), Expect = 0.00044, P = 0.00044
Identities = 20/38 (52%), Positives = 24/38 (63%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 46
GFAF+ F DAA AI G+ FGYD L+VEWA+
Sbjct: 79 GFAFISFHRREDAARAIAGVSG--FGYDHLILNVEWAK 114
>UNIPROTKB|E2QWK5 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 CTD:29974 OMA:PGYAVPN GO:GO:0030895
GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
EMBL:AAEX03014929 RefSeq:XP_534776.2 ProteinModelPortal:E2QWK5
Ensembl:ENSCAFT00000024715 GeneID:477581 KEGG:cfa:477581
Uniprot:E2QWK5
Length = 590
Score = 114 (45.2 bits), Expect = 0.00045, P = 0.00045
Identities = 47/149 (31%), Positives = 68/149 (45%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L ++V+WA E D S+ K L
Sbjct: 180 GFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV------KIL 233
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N + T E I++ F G V V+ R++AFV F +E+A +A+++ + L
Sbjct: 234 YVRNL-MLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKMLD 292
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGGYG 155
I V A D + RY + GG G
Sbjct: 293 GSPIEVTLAKPVDKDSYVRY-TRGTGGRG 320
>RGD|619834 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=ISO;ISS]
[GO:0003727 "single-stranded RNA binding" evidence=ISO;ISS]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0004131 "cytosine
deaminase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005720 "nuclear heterochromatin" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016554 "cytidine to uridine editing"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=NAS;IMP]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=ISO;ISS;TAS] [GO:0050821 "protein stabilization"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
RGD:619834 GO:GO:0005783 GO:GO:0005737 GO:GO:0050821 GO:GO:0000166
CTD:29974 HOVERGEN:HBG051917 GO:GO:0030895 GO:GO:0005720
GO:GO:0004131 GO:GO:0003729 GO:GO:0003727 GO:GO:0016554
GO:GO:0016556 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 OrthoDB:EOG4SXNCC EMBL:AF290984 EMBL:AF442133
EMBL:AF442134 EMBL:AF442135 EMBL:AY028945 IPI:IPI00382071
IPI:IPI00679207 IPI:IPI00679214 IPI:IPI00679221 RefSeq:NP_596891.1
UniGene:Rn.162520 ProteinModelPortal:Q923K9 SMR:Q923K9
STRING:Q923K9 PhosphoSite:Q923K9 PRIDE:Q923K9
Ensembl:ENSRNOT00000052256 GeneID:170912 KEGG:rno:170912
UCSC:RGD:619834 eggNOG:NOG246793 InParanoid:Q923K9 OMA:HAGVHHI
NextBio:621377 ArrayExpress:Q923K9 Genevestigator:Q923K9
Uniprot:Q923K9
Length = 594
Score = 114 (45.2 bits), Expect = 0.00045, P = 0.00045
Identities = 48/151 (31%), Positives = 69/151 (45%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L ++V+WA E D S+ K L
Sbjct: 180 GFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV------KIL 233
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N + T E I++ F G V V+ R++AFV F +E+A +A+++ + L
Sbjct: 234 YVRNL-MLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLD 292
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGGYGRH 157
I V A D + RY RG GR+
Sbjct: 293 GSPIEVTLAKPVDKDSYVRYT---RGTGGRN 320
>UNIPROTKB|F1LNL0 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 RGD:619834 GO:GO:0050821 GO:GO:0000166
GO:GO:0030895 GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
IPI:IPI00679207 Ensembl:ENSRNOT00000067643 ArrayExpress:F1LNL0
Uniprot:F1LNL0
Length = 594
Score = 114 (45.2 bits), Expect = 0.00045, P = 0.00045
Identities = 48/151 (31%), Positives = 69/151 (45%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L ++V+WA E D S+ K L
Sbjct: 180 GFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV------KIL 233
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N + T E I++ F G V V+ R++AFV F +E+A +A+++ + L
Sbjct: 234 YVRNL-MLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLD 292
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGGYGRH 157
I V A D + RY RG GR+
Sbjct: 293 GSPIEVTLAKPVDKDSYVRYT---RGTGGRN 320
>MGI|MGI:1917115 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0004131
"cytosine deaminase activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005720 "nuclear heterochromatin" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016554 "cytidine to uridine editing"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=ISO]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=ISO;TAS] [GO:0050821 "protein stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 InterPro:IPR014720 MGI:MGI:1917115 GO:GO:0005783
GO:GO:0005737 GO:GO:0050821 GO:GO:0000166 CTD:29974
eggNOG:NOG258596 HOVERGEN:HBG051917 OMA:PGYAVPN GO:GO:0030895
GO:GO:0005720 GO:GO:0004131 GO:GO:0003729 GO:GO:0003727
GO:GO:0016554 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 EMBL:AY566862 EMBL:AY566863
EMBL:AY566864 EMBL:AC117816 EMBL:AC125019 EMBL:BC089622
IPI:IPI00357048 IPI:IPI00665782 IPI:IPI00667120
RefSeq:NP_001074543.1 UniGene:Mm.87538 ProteinModelPortal:Q5YD48
SMR:Q5YD48 STRING:Q5YD48 PhosphoSite:Q5YD48 PaxDb:Q5YD48
PRIDE:Q5YD48 Ensembl:ENSMUST00000075838 GeneID:69865 KEGG:mmu:69865
UCSC:uc008het.1 UCSC:uc008heu.1 UCSC:uc008hev.1
GeneTree:ENSGT00550000074366 HOGENOM:HOG000186083 InParanoid:Q5YD48
OrthoDB:EOG4SXNCC NextBio:330501 Bgee:Q5YD48 CleanEx:MM_A1CF
Genevestigator:Q5YD48 GermOnline:ENSMUSG00000052595 Uniprot:Q5YD48
Length = 595
Score = 114 (45.2 bits), Expect = 0.00045, P = 0.00045
Identities = 48/151 (31%), Positives = 69/151 (45%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L ++V+WA E D S+ K L
Sbjct: 180 GFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV------KIL 233
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N + T E I++ F G V V+ R++AFV F +E+A +A+++ + L
Sbjct: 234 YVRNL-MLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLD 292
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGGYGRH 157
I V A D + RY RG GR+
Sbjct: 293 GSPIEVTLAKPVDKDSYVRYT---RGTGGRN 320
>UNIPROTKB|F1NDD0 [details] [associations]
symbol:F1NDD0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0007126 "meiosis"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=IEA] [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:AADN02019816 EMBL:AADN02019817 IPI:IPI00575003
ProteinModelPortal:F1NDD0 Ensembl:ENSGALT00000013174 Uniprot:F1NDD0
Length = 307
Score = 110 (43.8 bits), Expect = 0.00047, P = 0.00047
Identities = 29/106 (27%), Positives = 51/106 (48%)
Query: 55 GSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQF 107
G+ P + +FV D +T E D+++ F YG V V+I + + F+ F
Sbjct: 29 GAPRFGTVTPNR-IFVGGID-FKTNENDLRKFFAQYGCVREVKIVNDRAGISKGYGFITF 86
Query: 108 ETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGG 153
ETQE+A K L+ + D+ +++ A++ R R + + GG
Sbjct: 87 ETQEDAQKILQEAKKLNYKDKKLNIGPAIRKQQTRMPRSNVIQEGG 132
>TAIR|locus:2083936 [details] [associations]
symbol:RS2Z32 "arginine/serine-rich zinc
knuckle-containing protein 32" species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA;TAS] [GO:0008380 "RNA
splicing" evidence=NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132966
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0000398 HSSP:P52298
HOGENOM:HOG000276234 KO:K12896 EMBL:AY095996 EMBL:BT001034
EMBL:AK316697 IPI:IPI00525747 PIR:F84791 PIR:T45890
RefSeq:NP_190918.3 RefSeq:NP_851015.1 UniGene:At.26777
ProteinModelPortal:Q9FYB7 SMR:Q9FYB7 STRING:Q9FYB7 PRIDE:Q9FYB7
EnsemblPlants:AT3G53500.2 GeneID:824518 KEGG:ath:AT3G53500
TAIR:At3g53500 InParanoid:Q9FYB7 OMA:GSPKENG PhylomeDB:Q9FYB7
ProtClustDB:CLSN2680397 Genevestigator:Q9FYB7 Uniprot:Q9FYB7
Length = 284
Score = 93 (37.8 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 30/83 (36%), Positives = 42/83 (50%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136
RTR RD++R F YG V V ++R++AFV+F +A A D I+VE +
Sbjct: 21 RTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDFDGSRITVEASR 80
Query: 137 KDDSERDDRYDSPRRG---GYGR 156
+ R R D+ RG G GR
Sbjct: 81 --GAPRGSR-DNGSRGPPPGSGR 100
Score = 53 (23.7 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 22/50 (44%), Positives = 27/50 (54%)
Query: 178 RGRSPAYDR-YN-GPVYDQRRSPDHGRHRSPVPVYDRRRSPD-YGRNRSP 224
R RSP+ R Y+ G Y + RSP R +S V DR RSP R+ SP
Sbjct: 163 RRRSPSRSRSYSRGRSYSRSRSPVR-REKS---VEDRSRSPKAMERSVSP 208
>UNIPROTKB|E2RSD7 [details] [associations]
symbol:RBM4B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043153 "entrainment of circadian clock by
photoperiod" evidence=IEA] [GO:0032922 "circadian regulation of
gene expression" evidence=IEA] [GO:0010628 "positive regulation of
gene expression" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0006417 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0032922 GO:GO:0010628
Gene3D:4.10.60.10 GO:GO:0043153 GeneTree:ENSGT00390000020883
KO:K13187 CTD:83759 OMA:VYYNDAY EMBL:AAEX03011624
RefSeq:XP_533216.1 ProteinModelPortal:E2RSD7
Ensembl:ENSCAFT00000019655 GeneID:476008 KEGG:cfa:476008
NextBio:20851739 Uniprot:E2RSD7
Length = 359
Score = 109 (43.4 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 37/124 (29%), Positives = 63/124 (50%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
+ FV+ ED A DAIR L + + ++VE ++ +KS A+ TK L
Sbjct: 37 YGFVHIEDKTAAEDAIRNLHH--YKLHGVNINVEASK---------NKSKAS---TK-LH 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N P T + +++ FE YG V+ I +++AFV E E+A +A+ D ++ +
Sbjct: 82 VGNISPTCTNQ-ELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKR 140
Query: 130 ISVE 133
+ V+
Sbjct: 141 MHVQ 144
Score = 37 (18.1 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 192 YDQRRSPDHGRHRSPVPVYDR--RRSPDYGRNRSP 224
YD+ P+ G + + S YGR+RSP
Sbjct: 271 YDRHLLPNSGAAATSAAMAAAAANTSSYYGRDRSP 305
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 114 (45.2 bits), Expect = 0.00051, P = 0.00051
Identities = 42/150 (28%), Positives = 68/150 (45%)
Query: 9 GFAFVYFEDDRDAADAIRGL-DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK- 66
GF FV F + +A A++ L D+ G D + L V A+ + RH + K + +
Sbjct: 253 GFGFVAFANPEEAETAVQALHDSTIEGTDLK-LHVCRAQKKSERHAELKKKHEQHKAERM 311
Query: 67 ------TLFVINFDPIRTRERD-IKRHFEPYGNVLHVRIR-------RNFAFVQFETQEE 112
L+V N D T + D +K+ FE YGN+ ++ + F FV FE EE
Sbjct: 312 QKYQGVNLYVKNLD--ETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEE 369
Query: 113 ATKALESTDRSKLVDRVISVEYALKDDSER 142
AT A+ + + + + V A + + R
Sbjct: 370 ATSAVTEMNSKMVCSKPLYVAIAQRKEDRR 399
>UNIPROTKB|F1S0E2 [details] [associations]
symbol:SRSF12 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000395 "mRNA 5'-splice site recognition" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000381 GO:GO:0000395 GeneTree:ENSGT00700000104403
OMA:XSRHRRF EMBL:CU469321 Ensembl:ENSSSCT00000004768 Uniprot:F1S0E2
Length = 240
Score = 84 (34.6 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 79 RERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVI 130
R D++R F YG ++ V I R FA+VQFE +A AL + +R + R I
Sbjct: 1 RPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQI 60
Query: 131 SVEYALKD 138
+++A D
Sbjct: 61 EIQFAQGD 68
Score = 61 (26.5 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 197 SP-DHGRHRSPVPVYDRRRSPDYGRNR 222
SP DH R RSP R RS +GRNR
Sbjct: 84 SPSDHRRSRSPSQRRTRSRSSSWGRNR 110
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 114 (45.2 bits), Expect = 0.00055, P = 0.00055
Identities = 34/113 (30%), Positives = 58/113 (51%)
Query: 48 ERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN------ 101
E+ + ++ K +R +TLFV N P R E ++K FE N L VR+ N
Sbjct: 351 EKAKSKESLKENKKERDARTLFVKNL-PYRVTEDEMKNVFE---NALEVRLVLNKEGSSK 406
Query: 102 -FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGG 153
A+++F+T+ EA KALE +++ R + ++Y E+ + +S + GG
Sbjct: 407 GMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYT----GEKSQQ-ESQKGGG 454
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 114 (45.2 bits), Expect = 0.00055, P = 0.00055
Identities = 34/113 (30%), Positives = 58/113 (51%)
Query: 48 ERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN------ 101
E+ + ++ K +R +TLFV N P R E ++K FE N L VR+ N
Sbjct: 353 EKAKSKESLKENKKERDARTLFVKNL-PYRVTEDEMKNVFE---NALEVRLVLNKEGSSK 408
Query: 102 -FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGG 153
A+++F+T+ EA KALE +++ R + ++Y E+ + +S + GG
Sbjct: 409 GMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYT----GEKSQQ-ESQKGGG 456
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 114 (45.2 bits), Expect = 0.00056, P = 0.00055
Identities = 34/113 (30%), Positives = 58/113 (51%)
Query: 48 ERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN------ 101
E+ + ++ K +R +TLFV N P R E ++K FE N L VR+ N
Sbjct: 353 EKAKSKESLKENKKERDARTLFVKNL-PYRVTEDEMKNVFE---NALEVRLVLNKEGSSK 408
Query: 102 -FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGG 153
A+++F+T+ EA KALE +++ R + ++Y E+ + +S + GG
Sbjct: 409 GMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYT----GEKSQQ-ESQKGGG 456
>UNIPROTKB|B4DN89 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
Bgee:B4DN89 Uniprot:B4DN89
Length = 209
Score = 106 (42.4 bits), Expect = 0.00056, P = 0.00056
Identities = 43/159 (27%), Positives = 61/159 (38%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 128
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 129 VISVE---YALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYD 185
+ V+ Y DS R PR R Y R +S +
Sbjct: 84 ELRVQMARYGRPPDSHHSRRGPPPRSPR--RRRRSRSRSRSRSRSRSRSRYSRSKSRSRT 141
Query: 186 RYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 224
R + RS + +S R RS R+RSP
Sbjct: 142 RSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 180
>ZFIN|ZDB-GENE-041219-1 [details] [associations]
symbol:srsf6b "serine/arginine-rich splicing factor
6b" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-041219-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 KO:K12893
EMBL:BC086820 IPI:IPI00502132 RefSeq:NP_001008732.1
UniGene:Dr.76948 ProteinModelPortal:Q5M9N3 STRING:Q5M9N3
PRIDE:Q5M9N3 GeneID:494133 KEGG:dre:494133 CTD:494133
InParanoid:Q5M9N3 NextBio:20865634 ArrayExpress:Q5M9N3 Bgee:Q5M9N3
Uniprot:Q5M9N3
Length = 355
Score = 83 (34.3 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 23/47 (48%), Positives = 28/47 (59%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDG 55
G+ FV FED RDA DA+ L+ +R + VE ARG R R RDG
Sbjct: 36 GYGFVEFEDTRDADDAVYELNGKELCGER--VIVEHARGPR-RDRDG 79
Score = 67 (28.6 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 42/196 (21%), Positives = 64/196 (32%)
Query: 34 GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNV 93
G+ R S +R GR + G R L V N R +D+K G V
Sbjct: 86 GFGGRSNSGYSSRSRSGRDKYGPPVRTEYR----LIVENLSS-RCSWQDLKDFMRQAGEV 140
Query: 94 LHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPR 150
+ + R N ++F + + +AL+ D + + R I + ++D R Y + R
Sbjct: 141 TYADAHKERTNEGVIEFRSHSDMRRALDKLDVTDINGRKIRL---VEDKPRRRRSYSASR 197
Query: 151 RGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVY 210
R R RS +G Y R H
Sbjct: 198 SRSRSRRRSRSRSRRSSRSQSRSRSRSRSRSKHSRSRSGRKYRSRSRSSRKSHSKSHSKK 257
Query: 211 DRRRS---PDYGRNRS 223
R RS + R+RS
Sbjct: 258 SRSRSRSRTEKSRSRS 273
>UNIPROTKB|H3BPG5 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471112 EMBL:AC009065 UniGene:Hs.355643 UniGene:Hs.507343
UniGene:Hs.733012 HGNC:HGNC:10080 ChiTaRS:RNPS1 SMR:H3BPG5
Ensembl:ENST00000561718 Ensembl:ENST00000566397 Uniprot:H3BPG5
Length = 128
Score = 72 (30.4 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 94 LHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD-DSERDDRYDSPRR 151
+H + + +A+V+FE +EA KAL+ D ++ + I+ L R+ PRR
Sbjct: 20 MHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPRRFSPPRR 78
Score = 62 (26.9 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 17/30 (56%), Positives = 18/30 (60%)
Query: 195 RRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 224
RRSP R RS P RRRSP R+RSP
Sbjct: 87 RRSPPRMRRRSRSP---RRRSPVRRRSRSP 113
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 111 (44.1 bits), Expect = 0.00058, P = 0.00058
Identities = 36/156 (23%), Positives = 68/156 (43%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRL----SVEWARGERGRHRDGSKSMA--NQ 62
G+ FV F D+ + A+ ++ +P R+ S + G+R ++ + + N
Sbjct: 198 GYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDND 257
Query: 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALEST 120
T+FV D T + +K F YG ++HV+I + FVQF + A +AL
Sbjct: 258 PNNTTVFVGGLDASVTDDH-LKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRML 316
Query: 121 DRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGR 156
+ +L + + + +++ GGYG+
Sbjct: 317 NGVQLGGTTVRLSWGRSPSNKQSGDPSQFYYGGYGQ 352
>UNIPROTKB|H3BV80 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC009065 HGNC:HGNC:10080 ChiTaRS:RNPS1
ProteinModelPortal:H3BV80 SMR:H3BV80 Ensembl:ENST00000569598
Bgee:H3BV80 Uniprot:H3BV80
Length = 211
Score = 81 (33.6 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 29/127 (22%), Positives = 56/127 (44%)
Query: 35 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNV- 93
+D RR S ++ + ++ + + +PTK + + T++ I F YG +
Sbjct: 37 HDNRRRSRSKSKPPKRDEKERKRRSPSPKPTK-VHIGRLTRNVTKDH-IMEIFSTYGKIK 94
Query: 94 --------LHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD-DSERDD 144
+H + + +A+V+FE +EA KAL+ D ++ + I+ L
Sbjct: 95 MIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPR 154
Query: 145 RYDSPRR 151
R+ PRR
Sbjct: 155 RFSPPRR 161
Score = 62 (26.9 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 17/30 (56%), Positives = 18/30 (60%)
Query: 195 RRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 224
RRSP R RS P RRRSP R+RSP
Sbjct: 170 RRSPPRMRRRSRSP---RRRSPVRRRSRSP 196
>UNIPROTKB|Q2KIV3 [details] [associations]
symbol:RBM4B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=IEA] [GO:0032922 "circadian regulation of gene expression"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:DAAA02063594 EMBL:BC112497
IPI:IPI00711574 RefSeq:NP_001039393.1 UniGene:Bt.88781 SMR:Q2KIV3
Ensembl:ENSBTAT00000007153 GeneID:505756 KEGG:bta:505756
InParanoid:Q2KIV3 NextBio:20867298 Uniprot:Q2KIV3
Length = 359
Score = 109 (43.4 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 37/124 (29%), Positives = 63/124 (50%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
+ FV+ ED A DAIR L + + ++VE ++ +KS A+ TK L
Sbjct: 37 YGFVHIEDKTAAEDAIRNLHH--YKLHGVNINVEASK---------NKSKAS---TK-LH 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N P T + +++ FE YG V+ I +++AFV E E+A +A+ D ++ +
Sbjct: 82 VGNISPTCTNQ-ELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKR 140
Query: 130 ISVE 133
+ V+
Sbjct: 141 MHVQ 144
Score = 36 (17.7 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 192 YDQRRSPDHGRHRSPVPVYDRRRSPD--YGRNRSP 224
YD+ P+ G + + + YGR+RSP
Sbjct: 271 YDRHLLPNSGAAATSAAMAAAAATTSSYYGRDRSP 305
>UNIPROTKB|Q9BQ04 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0007623 "circadian rhythm" evidence=ISS]
[GO:0032922 "circadian regulation of gene expression" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 EMBL:CH471076 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W EMBL:AK095158 EMBL:BC003503
EMBL:BC004951 IPI:IPI00027838 RefSeq:NP_113680.1 UniGene:Hs.618713
PDB:2DGT PDBsum:2DGT ProteinModelPortal:Q9BQ04 SMR:Q9BQ04
IntAct:Q9BQ04 MINT:MINT-1379498 STRING:Q9BQ04 PhosphoSite:Q9BQ04
DMDM:62511129 SWISS-2DPAGE:Q9BQ04 PaxDb:Q9BQ04 PeptideAtlas:Q9BQ04
PRIDE:Q9BQ04 DNASU:83759 Ensembl:ENST00000310046
Ensembl:ENST00000525754 GeneID:83759 KEGG:hsa:83759 UCSC:uc001oja.3
CTD:83759 GeneCards:GC11M066432 HGNC:HGNC:28842 neXtProt:NX_Q9BQ04
PharmGKB:PA134977404 InParanoid:Q9BQ04 OMA:VYYNDAY PhylomeDB:Q9BQ04
ChiTaRS:RBM4B EvolutionaryTrace:Q9BQ04 GenomeRNAi:83759
NextBio:72795 ArrayExpress:Q9BQ04 Bgee:Q9BQ04 CleanEx:HS_RBM4B
Genevestigator:Q9BQ04 GermOnline:ENSG00000173914 Uniprot:Q9BQ04
Length = 359
Score = 109 (43.4 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 37/124 (29%), Positives = 63/124 (50%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
+ FV+ ED A DAIR L + + ++VE ++ +KS A+ TK L
Sbjct: 37 YGFVHIEDKTAAEDAIRNLHH--YKLHGVNINVEASK---------NKSKAS---TK-LH 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N P T + +++ FE YG V+ I +++AFV E E+A +A+ D ++ +
Sbjct: 82 VGNISPTCTNQ-ELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKR 140
Query: 130 ISVE 133
+ V+
Sbjct: 141 MHVQ 144
Score = 36 (17.7 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 192 YDQRRSPDHGRHRSPVPVYDRRRSPD--YGRNRSP 224
YD+ P+ G + + + YGR+RSP
Sbjct: 271 YDRHLLPNSGAAATSAAMAAAAATTSSYYGRDRSP 305
>UNIPROTKB|Q06AT9 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9823 "Sus
scrofa" [GO:0007623 "circadian rhythm" evidence=ISS] [GO:0006417
"regulation of translation" evidence=ISS] [GO:0043153 "entrainment
of circadian clock by photoperiod" evidence=ISS] [GO:0032922
"circadian regulation of gene expression" evidence=ISS] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 Gene3D:4.10.60.10 GO:GO:0043153
eggNOG:NOG294108 KO:K13187 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 EMBL:DQ917636 RefSeq:NP_001116660.1 UniGene:Ssc.53769
ProteinModelPortal:Q06AT9 SMR:Q06AT9 GeneID:100144418
KEGG:ssc:100144418 Uniprot:Q06AT9
Length = 359
Score = 109 (43.4 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 37/124 (29%), Positives = 63/124 (50%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
+ FV+ ED A DAIR L + + ++VE ++ +KS A+ TK L
Sbjct: 37 YGFVHIEDKTAAEDAIRNLHH--YKLHGVNINVEASK---------NKSKAS---TK-LH 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N P T + +++ FE YG V+ I +++AFV E E+A +A+ D ++ +
Sbjct: 82 VGNISPTCTNQ-ELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKR 140
Query: 130 ISVE 133
+ V+
Sbjct: 141 MHVQ 144
Score = 36 (17.7 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 192 YDQRRSPDHGRHRSPVPVYDRRRSPD--YGRNRSP 224
YD+ P+ G + + + YGR+RSP
Sbjct: 271 YDRHLLPNSGAAATSAAMAAAAATTSSYYGRDRSP 305
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 113 (44.8 bits), Expect = 0.00064, P = 0.00064
Identities = 41/137 (29%), Positives = 66/137 (48%)
Query: 9 GFAFVYFEDDRDAAD-AIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
G+AFV+FE +DAAD AI ++ + DR+ V R + + R+ A +
Sbjct: 139 GYAFVHFET-QDAADRAIEKMNGMLLN-DRK---VFVGRFKSRKEREAELG-AKAKEFTN 192
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALEST 120
+++ NF ER +K F YG L V++ + F FV FE E+A KA+E
Sbjct: 193 VYIKNFGDDMDDER-LKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 121 DRSKLVDRVISVEYALK 137
+ + +++ V A K
Sbjct: 252 NGKDINGKMVFVGRAQK 268
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 113 (44.8 bits), Expect = 0.00064, P = 0.00064
Identities = 40/142 (28%), Positives = 67/142 (47%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRR-LSVEWARGERGRHRDGSKSMANQRPTKT 67
G+A+V F+ ADA R LD + F + + + + W++ + + G + N
Sbjct: 53 GYAYVNFQQP---ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSG---VGN------ 100
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI------RRNFAFVQFETQEEATKALESTD 121
+F+ N D + + F +GN+L ++ + +AFV FETQE A KA+E +
Sbjct: 101 VFIKNLDK-SIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMN 159
Query: 122 RSKLVDRVISVEYALKDDSERD 143
L DR + V K ER+
Sbjct: 160 GMLLNDRKVFVG-RFKSRKERE 180
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 113 (44.8 bits), Expect = 0.00066, P = 0.00066
Identities = 37/136 (27%), Positives = 64/136 (47%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+AFV+FE A AI ++ + DR+ V R + + R+ A + +
Sbjct: 139 GYAFVHFETQEAADKAIEKMNGMLLN-DRK---VFVGRFKSRKEREAELG-AKAKEFTNV 193
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTD 121
++ NF + ++K F +G L V++ R+ F FV +E E+A KA+E +
Sbjct: 194 YIKNFGE-EVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 122 RSKLVDRVISVEYALK 137
++ +VI V A K
Sbjct: 253 GKEITGKVIFVGRAQK 268
Score = 112 (44.5 bits), Expect = 0.00087, P = 0.00087
Identities = 40/142 (28%), Positives = 67/142 (47%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRR-LSVEWARGERGRHRDGSKSMANQRPTKT 67
G+A+V F+ ADA R LD + F + + + + W++ + + G + N
Sbjct: 53 GYAYVNFQQP---ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSG---VGN------ 100
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI------RRNFAFVQFETQEEATKALESTD 121
+F+ N D + + F +GN+L ++ + +AFV FETQE A KA+E +
Sbjct: 101 VFIKNLDK-SIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMN 159
Query: 122 RSKLVDRVISVEYALKDDSERD 143
L DR + V K ER+
Sbjct: 160 GMLLNDRKVFVG-RFKSRKERE 180
>UNIPROTKB|F1NJ03 [details] [associations]
symbol:SRSF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 OMA:KDRGETR
EMBL:AADN02043941 IPI:IPI00581723 Ensembl:ENSGALT00000002149
Uniprot:F1NJ03
Length = 439
Score = 111 (44.1 bits), Expect = 0.00066, P = 0.00066
Identities = 55/225 (24%), Positives = 91/225 (40%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDR--RRLSVEWARGER-------GRHRDGSKSMA 60
+ FV F+D RDA DA+ L+ G D R+ VE ARG R GR G +
Sbjct: 1 YGFVEFDDLRDADDAVYELN----GKDLCGERVIVEHARGPRRDSSYGSGRSGYGYRRSG 56
Query: 61 NQR---PTKTLFVINFDPIRTR--ERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEE 112
+ PT+T + + + + +R +D+K + G V + + R+N ++F++ +
Sbjct: 57 RDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFKSYSD 116
Query: 113 ATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXX 172
+ALE D +++ R I + + S R Y R R
Sbjct: 117 MKRALEKLDGTEVNGRKIRLVED-RPGSRRRRSYSRSRSHSRSRSRSRHSHKSRSRSASS 175
Query: 173 XXDYGRGRSPAYDRYNGPVYDQRRSPDHG-RHRSPVPVY-DRRRS 215
R RS + R + +S G + +S P D+ RS
Sbjct: 176 SRSKSRSRSRSVSRSRSKSRSRSKSRSRGQKEKSRTPSKEDKSRS 220
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 113 (44.8 bits), Expect = 0.00068, P = 0.00068
Identities = 40/142 (28%), Positives = 67/142 (47%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRR-LSVEWARGERGRHRDGSKSMANQRPTKT 67
G+A+V F+ ADA R LD + F + + + + W++ + + G + N
Sbjct: 53 GYAYVNFQQP---ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSG---VGN------ 100
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI------RRNFAFVQFETQEEATKALESTD 121
+F+ N D + + F +GN+L ++ + +AFV FETQE A KA+E +
Sbjct: 101 VFIKNLDK-SIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMN 159
Query: 122 RSKLVDRVISVEYALKDDSERD 143
L DR + V K ER+
Sbjct: 160 GMLLNDRKVFVG-RFKSRKERE 180
>UNIPROTKB|E1BQR8 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0030895 "apolipoprotein B mRNA editing enzyme
complex" evidence=IEA] [GO:0050821 "protein stabilization"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720 GO:GO:0050821
GO:GO:0000166 OMA:PGYAVPN GO:GO:0030895 GO:GO:0003727
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 EMBL:AADN02035165
IPI:IPI00576681 ProteinModelPortal:E1BQR8
Ensembl:ENSGALT00000005974 Uniprot:E1BQR8
Length = 540
Score = 112 (44.5 bits), Expect = 0.00069, P = 0.00069
Identities = 47/149 (31%), Positives = 67/149 (44%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L ++V+WA E D S+ K L
Sbjct: 180 GFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV------KIL 233
Query: 69 FVINFDPIRTRERDIKRHFE--PYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N + T E I++ F G V V+ R++AFV F +E+A A+++ + L
Sbjct: 234 YVRNL-MLSTTEETIEKEFNNIKQGAVERVKKIRDYAFVHFNKREDAVHAMKALNGKVLD 292
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGGYG 155
I V A D + RY + GG G
Sbjct: 293 GSPIEVTLAKPVDKDSYVRY-TRGTGGRG 320
>UNIPROTKB|H3BR57 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC009065 HGNC:HGNC:10080 ChiTaRS:RNPS1 Ensembl:ENST00000564760
Bgee:H3BR57 Uniprot:H3BR57
Length = 112
Score = 72 (30.4 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 94 LHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD-DSERDDRYDSPRR 151
+H + + +A+V+FE +EA KAL+ D ++ + I+ L R+ PRR
Sbjct: 20 MHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPRRFSPPRR 78
Score = 55 (24.4 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 195 RRSPDHGRHRSPVPVYDRRRSPDYGRNRS 223
RRSP R RS P RRRSP R+RS
Sbjct: 87 RRSPPRMRRRSRSP---RRRSPVRRRSRS 112
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 110 (43.8 bits), Expect = 0.00071, P = 0.00071
Identities = 46/148 (31%), Positives = 70/148 (47%)
Query: 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQ 62
++ ++ GF FV F + DA AI+ L+ I Y + + V A H AN
Sbjct: 49 VTANHQGFGFVEFMGEEDADYAIKILNMIKL-YGKP-IKVNKASA----HEKNMDVGAN- 101
Query: 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV-RIRRN--------FAFVQFETQEEA 113
+FV N DP E+ + F +G +L V +I R+ FAF+ F + E +
Sbjct: 102 -----IFVGNLDP-EVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEAS 155
Query: 114 TKALESTDRSKLVDRVISVEYALKDDSE 141
ALE+ + L +R I+V YA K DS+
Sbjct: 156 DTALEAMNGQFLCNRAITVSYAFKRDSK 183
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 110 (43.8 bits), Expect = 0.00071, P = 0.00071
Identities = 46/148 (31%), Positives = 70/148 (47%)
Query: 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQ 62
++ ++ GF FV F + DA AI+ L+ I Y + + V A H AN
Sbjct: 49 VTANHQGFGFVEFMGEEDADYAIKILNMIKL-YGKP-IKVNKASA----HEKNMDVGAN- 101
Query: 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV-RIRRN--------FAFVQFETQEEA 113
+FV N DP E+ + F +G +L V +I R+ FAF+ F + E +
Sbjct: 102 -----IFVGNLDP-EVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEAS 155
Query: 114 TKALESTDRSKLVDRVISVEYALKDDSE 141
ALE+ + L +R I+V YA K DS+
Sbjct: 156 DTALEAMNGQFLCNRAITVSYAFKRDSK 183
WARNING: HSPs involving 22 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.140 0.431 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 240 211 0.00081 112 3 11 22 0.49 32
31 0.48 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 272
No. of states in DFA: 580 (62 KB)
Total size of DFA: 170 KB (2099 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.94u 0.08s 20.02t Elapsed: 00:00:01
Total cpu time: 19.97u 0.08s 20.05t Elapsed: 00:00:01
Start: Fri May 10 08:37:25 2013 End: Fri May 10 08:37:26 2013
WARNINGS ISSUED: 2