BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026341
(240 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|356520256|ref|XP_003528779.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like [Glycine
max]
Length = 259
Score = 332 bits (850), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 180/235 (76%), Positives = 200/235 (85%), Gaps = 12/235 (5%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
+GFAFVY+ED+RDA +AIR LDN+PFG+++RRLSVEWARGERGRH DGSK ANQ+PTKT
Sbjct: 35 SGFAFVYYEDERDAEEAIRALDNVPFGHEKRRLSVEWARGERGRHHDGSK--ANQKPTKT 92
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFVINFDPIRTR RDI++HFEPYGNVLHVRIRRNFAFVQFETQE+ATKALE T+ SK++D
Sbjct: 93 LFVINFDPIRTRVRDIEKHFEPYGNVLHVRIRRNFAFVQFETQEDATKALECTNMSKILD 152
Query: 128 RVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRY 187
RV+SVEYAL+DD ER D YDSPRR G Y RSPSP Y RRPSPDYGR RSP YDRY
Sbjct: 153 RVVSVEYALRDDGERGDNYDSPRRRG-----GYERSPSP-YHRRPSPDYGRPRSPVYDRY 206
Query: 188 NGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYR--SRSPVRRSRT 240
NG D RRSPD+GRHRS P Y RRRSPDYG+ RSP +GRYR SRSPVRRSRT
Sbjct: 207 NGGGPDMRRSPDYGRHRS--PDYGRRRSPDYGKPRSPEYGRYRSCSRSPVRRSRT 259
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
+ +F N + TR+ +++R F YG + V ++ FAFV +E + +A +A+ + D
Sbjct: 1 MRPIFAGNLE-YDTRQSELERLFAKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNVP 59
Query: 125 L--VDRVISVEYA 135
R +SVE+A
Sbjct: 60 FGHEKRRLSVEWA 72
>gi|224068024|ref|XP_002302651.1| predicted protein [Populus trichocarpa]
gi|222844377|gb|EEE81924.1| predicted protein [Populus trichocarpa]
Length = 236
Score = 328 bits (840), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 168/215 (78%), Positives = 183/215 (85%), Gaps = 15/215 (6%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
+GFAFVYFEDDRDAADA+RGLDNIPFGYDRRRLSVEWARGERGRHRDG +S ANQRPTKT
Sbjct: 36 SGFAFVYFEDDRDAADAVRGLDNIPFGYDRRRLSVEWARGERGRHRDGPRSTANQRPTKT 95
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFVINFDPI TR DIKRHFE YG VLHVRIRRNFAFVQFETQE+ATKALE T +K++D
Sbjct: 96 LFVINFDPIHTRVEDIKRHFERYGEVLHVRIRRNFAFVQFETQEDATKALECTHMTKILD 155
Query: 128 RVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRY 187
RV+SVEYAL+DDSER DRYDSPRRG Y GRSPSP YRRRPSPDY R RSP YD+Y
Sbjct: 156 RVVSVEYALRDDSERGDRYDSPRRGSYN-----GRSPSPVYRRRPSPDYVRARSPVYDKY 210
Query: 188 NGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNR 222
NGPVYD+R+SPD+GR+ RSP+YGRNR
Sbjct: 211 NGPVYDRRQSPDYGRN----------RSPEYGRNR 235
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV- 126
+FV NF+ TR+ D++R F YG V V ++ FAFV FE +A A+ D
Sbjct: 5 VFVGNFEH-ETRQSDLERLFSKYGRVERVDMKSGFAFVYFEDDRDAADAVRGLDNIPFGY 63
Query: 127 -DRVISVEYA 135
R +SVE+A
Sbjct: 64 DRRRLSVEWA 73
>gi|255645349|gb|ACU23171.1| unknown [Glycine max]
Length = 259
Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 178/235 (75%), Positives = 199/235 (84%), Gaps = 12/235 (5%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
+GFAFV++ED+RDA +AIR LDN+PFG+++RRLSVEWARGERGRH DGSK ANQ+PTKT
Sbjct: 35 SGFAFVFYEDERDAEEAIRALDNVPFGHEKRRLSVEWARGERGRHHDGSK--ANQKPTKT 92
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFVINFDPIRTR RDI++HFEPYGNVLHVRIRRNFAFVQFETQE+ATKALE T+ SK++D
Sbjct: 93 LFVINFDPIRTRVRDIEKHFEPYGNVLHVRIRRNFAFVQFETQEDATKALECTNMSKILD 152
Query: 128 RVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRY 187
RV+SVEYAL+DD ER D YDSPRR G Y RSPSP Y RRPSPDYGR RSP YDRY
Sbjct: 153 RVVSVEYALRDDGERGDNYDSPRRRG-----GYERSPSP-YHRRPSPDYGRPRSPVYDRY 206
Query: 188 NGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYR--SRSPVRRSRT 240
NG D RRSPD+GRHRS P Y RRRSPDYG+ RSP +GRYR SRS VRRSRT
Sbjct: 207 NGGGPDMRRSPDYGRHRS--PDYGRRRSPDYGKPRSPEYGRYRSCSRSLVRRSRT 259
Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL--VDRVISVEYA 135
TR+ +++R F YG + V ++ FAFV +E + +A +A+ + D R +SVE+A
Sbjct: 13 TRQSELERLFAKYGRIDRVDMKSGFAFVFYEDERDAEEAIRALDNVPFGHEKRRLSVEWA 72
>gi|255564609|ref|XP_002523299.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
gi|223537387|gb|EEF39015.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
Length = 259
Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 167/224 (74%), Positives = 184/224 (82%), Gaps = 23/224 (10%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
+GFAFVYFED+RDAADAIRGLDNI FGYDRR+LSVEWARGERGRHRDGS+SMANQRPTKT
Sbjct: 36 SGFAFVYFEDERDAADAIRGLDNISFGYDRRKLSVEWARGERGRHRDGSRSMANQRPTKT 95
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFVINFDPI TR DIKRHFE YG VLHVRIRRNFAFVQFETQE+ATKALE T +K++D
Sbjct: 96 LFVINFDPIHTRVEDIKRHFERYGEVLHVRIRRNFAFVQFETQEDATKALECTHMTKILD 155
Query: 128 RVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRY 187
RV+SVEYAL+DDSER D+ DSPRRG S YGRSPSP YRRRPSPDYGR RSP YD+Y
Sbjct: 156 RVVSVEYALRDDSERGDKSDSPRRG-----SHYGRSPSPVYRRRPSPDYGRARSPVYDKY 210
Query: 188 NGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRS 231
NGP YD+RR SP+YGR++SP +GRYRS
Sbjct: 211 NGPSYDRRR------------------SPEYGRDQSPEYGRYRS 236
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV- 126
+FV NF+ TR+ +++R F YG V V ++ FAFV FE + +A A+ D
Sbjct: 5 IFVGNFE-FETRQSELERLFSKYGRVERVDMKSGFAFVYFEDERDAADAIRGLDNISFGY 63
Query: 127 -DRVISVEYA 135
R +SVE+A
Sbjct: 64 DRRKLSVEWA 73
>gi|356559961|ref|XP_003548264.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like [Glycine
max]
Length = 264
Score = 322 bits (826), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 170/224 (75%), Positives = 194/224 (86%), Gaps = 11/224 (4%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
+GFAFVY+ED+RDA +AIR LDN+PFG+++RRLSVEWARGERGRHRDGSK ANQ+PTKT
Sbjct: 35 SGFAFVYYEDERDAEEAIRALDNVPFGHEKRRLSVEWARGERGRHRDGSK--ANQKPTKT 92
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFVINFDPIRTR RDI++HFEPYGNVLHVRIRRNFAFVQFETQE+ATKA+E T+ SK++D
Sbjct: 93 LFVINFDPIRTRVRDIEKHFEPYGNVLHVRIRRNFAFVQFETQEDATKAIECTNMSKILD 152
Query: 128 RVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRY 187
RV+SVEYAL+DD ER D YDSPRRGG Y RSPSP Y RRPSPDYGR RSP YDRY
Sbjct: 153 RVVSVEYALRDDGERGDNYDSPRRGG------YERSPSP-YHRRPSPDYGRPRSPVYDRY 205
Query: 188 NGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRS 231
NG D+RRSPD+GRHRS P Y RRRSPDYGR +SP++G+ RS
Sbjct: 206 NGGGPDRRRSPDYGRHRS--PDYGRRRSPDYGRRKSPDYGKPRS 247
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
+ +F N + TR+ +++R F YG + V ++ FAFV +E + +A +A+ + D
Sbjct: 1 MRPIFAGNLE-YDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNVP 59
Query: 125 L--VDRVISVEYA 135
R +SVE+A
Sbjct: 60 FGHEKRRLSVEWA 72
>gi|449432024|ref|XP_004133800.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like [Cucumis
sativus]
gi|449477961|ref|XP_004155176.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like [Cucumis
sativus]
Length = 253
Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 168/203 (82%), Positives = 184/203 (90%), Gaps = 5/203 (2%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
+GFAFVYFED+RDA DAIRGLDN+PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT
Sbjct: 35 SGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 94
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFVINFDPIRTR RDI+RHFEPYG VL+VRIRRNFAFVQFETQE+ATKALE T SK++D
Sbjct: 95 LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD 154
Query: 128 RVISVEYALKDDSERDDRYD-SPRR-GGYGR--HSPYGRSPSPAYRRRPSPDYGRGRSPA 183
RV+SVEYAL+DD ER D +D SPRR GGYGR SPY RSPSP +RRRPSPDYGR SPA
Sbjct: 155 RVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPA 214
Query: 184 YDRYNGPVYDQRRSPDHGRHRSP 206
YDRYNGP Y++RRSPD+GR+RSP
Sbjct: 215 YDRYNGP-YERRRSPDYGRNRSP 236
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
+ +FV NF TR+ +++R F YG V + ++ FAFV FE + +A A+ D
Sbjct: 1 MRPIFVGNFG-YDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLP 59
Query: 125 LV--DRVISVEYA 135
R +SVE+A
Sbjct: 60 FGYDRRRLSVEWA 72
>gi|224130604|ref|XP_002320882.1| predicted protein [Populus trichocarpa]
gi|222861655|gb|EEE99197.1| predicted protein [Populus trichocarpa]
Length = 236
Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 166/218 (76%), Positives = 184/218 (84%), Gaps = 18/218 (8%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR---GERGRHRDGSKSMANQRP 64
+GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR GERGRHRDG +S NQRP
Sbjct: 34 SGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARVYAGERGRHRDGPRSTVNQRP 93
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
TKTLFVINFDPI TR DIKRHFE YG VLHVRIRRNFAFVQFETQE+ATKAL+ T +K
Sbjct: 94 TKTLFVINFDPIHTRVEDIKRHFERYGEVLHVRIRRNFAFVQFETQEDATKALQRTHMTK 153
Query: 125 LVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAY 184
++DRV+SVEYAL+DDSER DRYDSPRRG Y YGRSPSPA+ RRP+PDYGRG SP Y
Sbjct: 154 ILDRVVSVEYALRDDSERGDRYDSPRRGSY-----YGRSPSPAHHRRPNPDYGRGHSPVY 208
Query: 185 DRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNR 222
D+YNGPV+D+RRSPD+GR+ RSP+YGR+R
Sbjct: 209 DKYNGPVHDRRRSPDYGRN----------RSPEYGRHR 236
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV- 126
+FV NF+ TR+ +++R F YG V V ++ FAFV FE +A A+ D
Sbjct: 3 IFVGNFEQ-ETRQSELERLFRKYGRVERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGY 61
Query: 127 -DRVISVEYALKDDSERDDRYDSPR 150
R +SVE+A ER D PR
Sbjct: 62 DRRRLSVEWARVYAGERGRHRDGPR 86
>gi|297745508|emb|CBI40588.3| unnamed protein product [Vitis vinifera]
Length = 224
Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 162/206 (78%), Positives = 180/206 (87%), Gaps = 8/206 (3%)
Query: 1 MCIS-LHYA-GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKS 58
C S LH + GFAFVYFED+ DA DAIRGLDNIPFGYDRRRLSVEWA+GERGRHR+GS+S
Sbjct: 9 FCASALHISSGFAFVYFEDEHDADDAIRGLDNIPFGYDRRRLSVEWAKGERGRHREGSRS 68
Query: 59 MANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALE 118
MANQRPTKTLFVINFDPIRTR RDI+RHFEPYG VLHVRIRRNFAFVQ+ETQE+ATKALE
Sbjct: 69 MANQRPTKTLFVINFDPIRTRIRDIERHFEPYGKVLHVRIRRNFAFVQYETQEDATKALE 128
Query: 119 STDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGR--HSPYGRSPSPAYRR-RPSPD 175
T SK++DRV+SVEYAL+DDS D+YDSPRRGGY R SPYGRSPSP RR RPSPD
Sbjct: 129 CTHMSKILDRVVSVEYALRDDS---DKYDSPRRGGYSRRGESPYGRSPSPVNRRGRPSPD 185
Query: 176 YGRGRSPAYDRYNGPVYDQRRSPDHG 201
YGR +SP YDRYNGP Y++ RSP++G
Sbjct: 186 YGRAQSPVYDRYNGPAYERNRSPEYG 211
>gi|225470972|ref|XP_002267297.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like [Vitis
vinifera]
Length = 241
Score = 312 bits (800), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 158/197 (80%), Positives = 176/197 (89%), Gaps = 6/197 (3%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
+GFAFVYFED+ DA DAIRGLDNIPFGYDRRRLSVEWA+GERGRHR+GS+SMANQRPTKT
Sbjct: 35 SGFAFVYFEDEHDADDAIRGLDNIPFGYDRRRLSVEWAKGERGRHREGSRSMANQRPTKT 94
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFVINFDPIRTR RDI+RHFEPYG VLHVRIRRNFAFVQ+ETQE+ATKALE T SK++D
Sbjct: 95 LFVINFDPIRTRIRDIERHFEPYGKVLHVRIRRNFAFVQYETQEDATKALECTHMSKILD 154
Query: 128 RVISVEYALKDDSERDDRYDSPRRGGYGR--HSPYGRSPSPAYRR-RPSPDYGRGRSPAY 184
RV+SVEYAL+DDS D+YDSPRRGGY R SPYGRSPSP RR RPSPDYGR +SP Y
Sbjct: 155 RVVSVEYALRDDS---DKYDSPRRGGYSRRGESPYGRSPSPVNRRGRPSPDYGRAQSPVY 211
Query: 185 DRYNGPVYDQRRSPDHG 201
DRYNGP Y++ RSP++G
Sbjct: 212 DRYNGPAYERNRSPEYG 228
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV- 126
+F NF+ TR+ D++R F YG V V ++ FAFV FE + +A A+ D
Sbjct: 4 IFCGNFE-YETRQSDLERLFSKYGRVERVDMKSGFAFVYFEDEHDADDAIRGLDNIPFGY 62
Query: 127 -DRVISVEYA 135
R +SVE+A
Sbjct: 63 DRRRLSVEWA 72
>gi|357514487|ref|XP_003627532.1| Arginine/serine-rich splicing factor [Medicago truncatula]
gi|355521554|gb|AET02008.1| Arginine/serine-rich splicing factor [Medicago truncatula]
Length = 301
Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 162/224 (72%), Positives = 184/224 (82%), Gaps = 20/224 (8%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
+GFAFVY+ED+RDA +AIR LDNIPFG+D+RRLSVEWARGERGRHRDGSK NQ+PTKT
Sbjct: 35 SGFAFVYYEDERDAEEAIRALDNIPFGHDKRRLSVEWARGERGRHRDGSK--PNQKPTKT 92
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFVINFDPIRTR DI+RHF+PYG + HVRIRRNFAFVQ+ETQE+ATKALE T+ SK++D
Sbjct: 93 LFVINFDPIRTRVSDIERHFKPYGPLHHVRIRRNFAFVQYETQEDATKALECTNMSKILD 152
Query: 128 RVISVEYALKDDSERDDRY-DSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDR 186
RV+SVEYAL+DDS+R D Y SPRRGG RSPSP YRRRPSPDYGR RSP YDR
Sbjct: 153 RVVSVEYALRDDSDRVDNYGGSPRRGG-----GLARSPSPGYRRRPSPDYGRPRSPVYDR 207
Query: 187 YNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYR 230
Y GP D+RRSPD+GR+ RSPDYGRNRSP +GRYR
Sbjct: 208 YTGP--DRRRSPDYGRN----------RSPDYGRNRSPEYGRYR 239
Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV--DRVISVEYA 135
TR+ +++R F YG + V ++ FAFV +E + +A +A+ + D R +SVE+A
Sbjct: 13 TRQSELERLFSKYGRIERVDMKSGFAFVYYEDERDAEEAIRALDNIPFGHDKRRLSVEWA 72
>gi|297821068|ref|XP_002878417.1| arginine/serine-rich splicing factor 31 [Arabidopsis lyrata subsp.
lyrata]
gi|297324255|gb|EFH54676.1| arginine/serine-rich splicing factor 31 [Arabidopsis lyrata subsp.
lyrata]
Length = 264
Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 164/240 (68%), Positives = 189/240 (78%), Gaps = 19/240 (7%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
+G+AFVYFED+RDA DAIR LDN PFGY++RRLSVEWA+GERGR R +K+ +N +PTKT
Sbjct: 35 SGYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAKGERGRPRGDAKATSNLKPTKT 94
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFVINFDPIRT+E DI++HFEPYG V++VRIRRNF+FVQFETQE+ATKALE+T RSK++D
Sbjct: 95 LFVINFDPIRTKEHDIEKHFEPYGKVINVRIRRNFSFVQFETQEDATKALEATQRSKILD 154
Query: 128 RVISVEYALKDDSERDDRYD--SPRRGGYG----RHSP-YGRSPSPAYRRRPSPDYGRGR 180
RV+SVEYALKDD ERDDRY SPRR R SP YGR PSP Y RRPSPD GR R
Sbjct: 155 RVVSVEYALKDDDERDDRYGGRSPRRSLSPVYRRRPSPDYGRRPSPDYGRRPSPDNGRAR 214
Query: 181 SPAYDRYNGP-VYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRSRSPVRRSR 239
SP YDRY GP Y++RRSPD+G RRS DYGR RSP + RYRSRSPV R R
Sbjct: 215 SPEYDRYKGPAAYERRRSPDYG-----------RRSSDYGRQRSPGYDRYRSRSPVPRGR 263
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL-- 125
+FV NF+ TR+ D++R F+ YG V V ++ +AFV FE + +A A+ D
Sbjct: 4 VFVGNFE-YETRQSDLERLFDKYGRVERVDMKSGYAFVYFEDERDAEDAIRKLDNFPFGY 62
Query: 126 VDRVISVEYA 135
R +SVE+A
Sbjct: 63 EKRRLSVEWA 72
>gi|217072928|gb|ACJ84824.1| unknown [Medicago truncatula]
Length = 242
Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 160/223 (71%), Positives = 182/223 (81%), Gaps = 20/223 (8%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
+GFAFVY+ED+RDA +AIR LDNIPFG+D+RRLSVEWARGERGRHRDGSK NQ+PTKT
Sbjct: 35 SGFAFVYYEDERDAEEAIRALDNIPFGHDKRRLSVEWARGERGRHRDGSK--PNQKPTKT 92
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFVINFDPIRTR DI+RHF+PYG + HVRIRRNFAFVQ+ETQE+ATKALE T+ SK++D
Sbjct: 93 LFVINFDPIRTRVSDIERHFKPYGPLHHVRIRRNFAFVQYETQEDATKALECTNMSKILD 152
Query: 128 RVISVEYALKDDSERDDRY-DSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDR 186
RV+SVEYAL+DDS+R D Y SPRRGG RSPSP YRRRPSPDYGR RSP YDR
Sbjct: 153 RVVSVEYALRDDSDRVDNYGGSPRRGG-----GLARSPSPGYRRRPSPDYGRPRSPVYDR 207
Query: 187 YNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRY 229
Y GP D+RRSPD+GR+ SPDYGRNRSP +GRY
Sbjct: 208 YTGP--DRRRSPDYGRN----------GSPDYGRNRSPEYGRY 238
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV--DRVISVEYA 135
TR+ +++R F YG + V ++ FAFV +E + +A +A+ + D R +SVE+A
Sbjct: 13 TRQSELERLFSKYGRIERVDMKSGFAFVYYEDERDAEEAIRALDNIPFGHDKRRLSVEWA 72
>gi|388506284|gb|AFK41208.1| unknown [Medicago truncatula]
Length = 249
Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 159/221 (71%), Positives = 181/221 (81%), Gaps = 20/221 (9%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
+GFAFVY+ED+RDA +AIR LDNIPFG+D+RRLSVEWARGERGRHRDGSK NQ+PTKT
Sbjct: 35 SGFAFVYYEDERDAEEAIRALDNIPFGHDKRRLSVEWARGERGRHRDGSK--PNQKPTKT 92
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFVINFDPIRTR DI+RHF+PYG + HVRIRRNFAFVQ+ETQE+ATKALE T+ SK++D
Sbjct: 93 LFVINFDPIRTRVSDIERHFKPYGPLHHVRIRRNFAFVQYETQEDATKALECTNMSKILD 152
Query: 128 RVISVEYALKDDSERDDRY-DSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDR 186
RV+SVEYAL+DDS+R D Y SPRRGG RSPSP YRRRPSPDYGR RSP YDR
Sbjct: 153 RVVSVEYALRDDSDRVDNYGGSPRRGG-----GLARSPSPGYRRRPSPDYGRPRSPVYDR 207
Query: 187 YNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 227
Y GP D+RRSPD+GR+ RSPDYGRNRSP +G
Sbjct: 208 YTGP--DRRRSPDYGRN----------RSPDYGRNRSPEYG 236
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV--DRVISVEYA 135
TR+ +++R F YG + V ++ FAFV +E + +A +A+ + D R +SVE+A
Sbjct: 13 TRQSELERLFSKYGRIERVDMKSGFAFVYYEDERDAEEAIRALDNIPFGHDKRRLSVEWA 72
>gi|357514489|ref|XP_003627533.1| Arginine/serine-rich splicing factor [Medicago truncatula]
gi|355521555|gb|AET02009.1| Arginine/serine-rich splicing factor [Medicago truncatula]
Length = 217
Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 159/221 (71%), Positives = 181/221 (81%), Gaps = 20/221 (9%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
+GFAFVY+ED+RDA +AIR LDNIPFG+D+RRLSVEWARGERGRHRDGSK NQ+PTKT
Sbjct: 3 SGFAFVYYEDERDAEEAIRALDNIPFGHDKRRLSVEWARGERGRHRDGSK--PNQKPTKT 60
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFVINFDPIRTR DI+RHF+PYG + HVRIRRNFAFVQ+ETQE+ATKALE T+ SK++D
Sbjct: 61 LFVINFDPIRTRVSDIERHFKPYGPLHHVRIRRNFAFVQYETQEDATKALECTNMSKILD 120
Query: 128 RVISVEYALKDDSERDDRY-DSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDR 186
RV+SVEYAL+DDS+R D Y SPRRGG RSPSP YRRRPSPDYGR RSP YDR
Sbjct: 121 RVVSVEYALRDDSDRVDNYGGSPRRGG-----GLARSPSPGYRRRPSPDYGRPRSPVYDR 175
Query: 187 YNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 227
Y GP D+RRSPD+GR+ RSPDYGRNRSP +G
Sbjct: 176 YTGP--DRRRSPDYGRN----------RSPDYGRNRSPEYG 204
>gi|18412169|ref|NP_567120.1| arginine/serine-rich-splicing factor RSP31 [Arabidopsis thaliana]
gi|26454661|sp|P92964.2|RSP31_ARATH RecName: Full=Arginine/serine-rich-splicing factor RSP31
gi|16612268|gb|AAL27502.1|AF439831_1 AT3g61860/F21F14_30 [Arabidopsis thaliana]
gi|21928093|gb|AAM78075.1| AT3g61860/F21F14_30 [Arabidopsis thaliana]
gi|332646749|gb|AEE80270.1| arginine/serine-rich-splicing factor RSP31 [Arabidopsis thaliana]
Length = 264
Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 163/240 (67%), Positives = 187/240 (77%), Gaps = 19/240 (7%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
+G+AFVYFED+RDA DAIR LDN PFGY++RRLSVEWA+GERGR R +K+ +N +PTKT
Sbjct: 35 SGYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKT 94
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFVINFDPIRT+E DI++HFEPYG V +VRIRRNF+FVQFETQE+ATKALE+T RSK++D
Sbjct: 95 LFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILD 154
Query: 128 RVISVEYALKDDSERDDRYD--SPRRGGYG----RHSP-YGRSPSPAYRRRPSPDYGRGR 180
RV+SVEYALKDD ERDDR SPRR R SP YGR PSP RRPSPDYGR R
Sbjct: 155 RVVSVEYALKDDDERDDRNGGRSPRRSLSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRAR 214
Query: 181 SPAYDRYNGP-VYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRSRSPVRRSR 239
SP YDRY GP Y++RRSPD+G RRS DYGR RSP + RYRSRSPV R R
Sbjct: 215 SPEYDRYKGPAAYERRRSPDYG-----------RRSSDYGRQRSPGYDRYRSRSPVPRGR 263
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
+ +FV NF+ TR+ D++R F+ YG V V ++ +AFV FE + +A A+ D
Sbjct: 1 MRPVFVGNFE-YETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFP 59
Query: 125 L--VDRVISVEYA 135
R +SVE+A
Sbjct: 60 FGYEKRRLSVEWA 72
>gi|388494340|gb|AFK35236.1| unknown [Medicago truncatula]
Length = 249
Score = 293 bits (749), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 158/221 (71%), Positives = 180/221 (81%), Gaps = 20/221 (9%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
+GFAFVY+ED+RDA +AIR LDNIPFG+D+RRLSVEWARGERGRHRDGSK NQ+PTKT
Sbjct: 35 SGFAFVYYEDERDAEEAIRALDNIPFGHDKRRLSVEWARGERGRHRDGSK--PNQKPTKT 92
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFVINFDPIRTR DI+RHF+PYG + HVRIRRNFAFVQ+ETQE+ATKALE T+ SK++D
Sbjct: 93 LFVINFDPIRTRVSDIERHFKPYGPLHHVRIRRNFAFVQYETQEDATKALECTNMSKILD 152
Query: 128 RVISVEYALKDDSERDDRY-DSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDR 186
RV+SVEYAL+DDS+R D Y SPRRGG RSPSP YRRRPSPDYGR RSP YDR
Sbjct: 153 RVVSVEYALRDDSDRVDNYGGSPRRGG-----GLARSPSPGYRRRPSPDYGRPRSPVYDR 207
Query: 187 YNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 227
Y GP D+RRSPD+GR+ SPDYGRNRSP +G
Sbjct: 208 YTGP--DRRRSPDYGRN----------GSPDYGRNRSPEYG 236
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV--DRVISVEYA 135
TR+ +++R F YG + V ++ FAFV +E + +A +A+ + D R +SVE+A
Sbjct: 13 TRQSELERLFSKYGRIERVDMKSGFAFVYYEDERDAEEAIRALDNIPFGHDKRRLSVEWA 72
>gi|1707366|emb|CAA67798.1| splicing factor [Arabidopsis thaliana]
Length = 264
Score = 292 bits (748), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 162/240 (67%), Positives = 187/240 (77%), Gaps = 19/240 (7%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
+G+AFVYFED+RDA DAIR LDN PFGY++R+LSVEWA+GERGR R +K+ +N +PTKT
Sbjct: 35 SGYAFVYFEDERDAEDAIRKLDNFPFGYEKRKLSVEWAKGERGRPRGDAKAPSNLKPTKT 94
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFVINFDPIRT+E DI++HFEPYG V +VRIRRNF+FVQFETQE+ATKALE+T RSK++D
Sbjct: 95 LFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILD 154
Query: 128 RVISVEYALKDDSERDDRYD--SPRRGGYG----RHSP-YGRSPSPAYRRRPSPDYGRGR 180
RV+SVEYALKDD ERDDR SPRR R SP YGR PSP RRPSPDYGR R
Sbjct: 155 RVVSVEYALKDDDERDDRNGGRSPRRSLSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRAR 214
Query: 181 SPAYDRYNGP-VYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRSRSPVRRSR 239
SP YDRY GP Y++RRSPD+G RRS DYGR RSP + RYRSRSPV R R
Sbjct: 215 SPEYDRYKGPAAYERRRSPDYG-----------RRSSDYGRQRSPGYDRYRSRSPVPRGR 263
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
+ +FV NF+ TR+ D++R F+ YG V V ++ +AFV FE + +A A+ D
Sbjct: 1 MRPVFVGNFE-YETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFP 59
Query: 125 L--VDRVISVEYA 135
R +SVE+A
Sbjct: 60 FGYEKRKLSVEWA 72
>gi|6899884|emb|CAB71893.1| ARGININE/SERINE-RICH SPLICING FACTOR RSP31 [Arabidopsis thaliana]
Length = 271
Score = 286 bits (731), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 157/232 (67%), Positives = 181/232 (78%), Gaps = 19/232 (8%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
+G+AFVYFED+RDA DAIR LDN PFGY++RRLSVEWA+GERGR R +K+ +N +PTKT
Sbjct: 35 SGYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKT 94
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFVINFDPIRT+E DI++HFEPYG V +VRIRRNF+FVQFETQE+ATKALE+T RSK++D
Sbjct: 95 LFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILD 154
Query: 128 RVISVEYALKDDSERDDRYD--SPRRGGYG----RHSP-YGRSPSPAYRRRPSPDYGRGR 180
RV+SVEYALKDD ERDDR SPRR R SP YGR PSP RRPSPDYGR R
Sbjct: 155 RVVSVEYALKDDDERDDRNGGRSPRRSLSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRAR 214
Query: 181 SPAYDRYNGP-VYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRS 231
SP YDRY GP Y++RRSPD+G RRS DYGR RSP + RYRS
Sbjct: 215 SPEYDRYKGPAAYERRRSPDYG-----------RRSSDYGRQRSPGYDRYRS 255
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL-- 125
+FV NF+ TR+ D++R F+ YG V V ++ +AFV FE + +A A+ D
Sbjct: 4 VFVGNFE-YETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFGY 62
Query: 126 VDRVISVEYA 135
R +SVE+A
Sbjct: 63 EKRRLSVEWA 72
>gi|42571257|ref|NP_973702.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|330255635|gb|AEC10729.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 224
Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 157/244 (64%), Positives = 186/244 (76%), Gaps = 26/244 (10%)
Query: 1 MCISLHY-AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR---GERGRHRDGS 56
M SLH AG+AFVYFED+RDA DAIR DN FGY RR+LSVEWA+ GERG+ RDG
Sbjct: 1 MYTSLHIDAGYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAKDFQGERGKPRDG- 59
Query: 57 KSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKA 116
K+++NQRPTKTLFVINFDPIRTRERD++RHFEPYG VL+VR+RRNFAFVQF TQE+ATKA
Sbjct: 60 KAVSNQRPTKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKA 119
Query: 117 LESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDY 176
L+ST SKL+D+V+SVEYAL++ ER+DRY RR RSPSP YRRRPSPDY
Sbjct: 120 LDSTHNSKLLDKVVSVEYALREAGEREDRYAGSRR---------RRSPSPVYRRRPSPDY 170
Query: 177 GRGRSPAYDRYNGPV-YDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRSRSPV 235
R RSP YDRY GP Y++R+SPD+G RRS DYGR R+ + G RSRSP+
Sbjct: 171 TRRRSPEYDRYKGPAPYERRKSPDYG-----------RRSSDYGRARARSPGYDRSRSPI 219
Query: 236 RRSR 239
+R+R
Sbjct: 220 QRAR 223
>gi|15226019|ref|NP_182184.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|4415941|gb|AAD20171.1| putative arginine/serine-rich splicing factor [Arabidopsis
thaliana]
gi|17529006|gb|AAL38713.1| putative arginine/serine-rich splicing factor [Arabidopsis
thaliana]
gi|24030496|gb|AAN41395.1| putative arginine/serine-rich splicing factor [Arabidopsis
thaliana]
gi|222423842|dbj|BAH19886.1| AT2G46610 [Arabidopsis thaliana]
gi|330255634|gb|AEC10728.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 250
Score = 273 bits (697), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 152/236 (64%), Positives = 182/236 (77%), Gaps = 25/236 (10%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR---GERGRHRDGSKSMANQRP 64
+G+AFVYFED+RDA DAIR DN FGY RR+LSVEWA+ GERG+ RDG K+++NQRP
Sbjct: 35 SGYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAKDFQGERGKPRDG-KAVSNQRP 93
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
TKTLFVINFDPIRTRERD++RHFEPYG VL+VR+RRNFAFVQF TQE+ATKAL+ST SK
Sbjct: 94 TKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSK 153
Query: 125 LVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAY 184
L+D+V+SVEYAL++ ER+DRY RR RSPSP YRRRPSPDY R RSP Y
Sbjct: 154 LLDKVVSVEYALREAGEREDRYAGSRR---------RRSPSPVYRRRPSPDYTRRRSPEY 204
Query: 185 DRYNGPV-YDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRSRSPVRRSR 239
DRY GP Y++R+SPD+G RRS DYGR R+ + G RSRSP++R+R
Sbjct: 205 DRYKGPAPYERRKSPDYG-----------RRSSDYGRARARSPGYDRSRSPIQRAR 249
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL-- 125
++V NFD TR D++R F +G V V ++ +AFV FE + +A A+ TD +
Sbjct: 4 VYVGNFD-YDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTFGY 62
Query: 126 VDRVISVEYALKDDSER 142
R +SVE+A ER
Sbjct: 63 GRRKLSVEWAKDFQGER 79
>gi|297828391|ref|XP_002882078.1| hypothetical protein ARALYDRAFT_483824 [Arabidopsis lyrata subsp.
lyrata]
gi|297327917|gb|EFH58337.1| hypothetical protein ARALYDRAFT_483824 [Arabidopsis lyrata subsp.
lyrata]
Length = 250
Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/221 (67%), Positives = 172/221 (77%), Gaps = 23/221 (10%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG---ERGRHRDGSKSMANQRP 64
+G+AFVYFED+RDA DAIRG DN FGY+RR+LSVEWA+G ERG+ RDG K+ +NQRP
Sbjct: 35 SGYAFVYFEDERDAEDAIRGTDNTTFGYERRKLSVEWAKGFKGERGKPRDG-KAASNQRP 93
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
TKTLFVINFDPIRTRERD++RHFEPYG VL+VRIRRNFAFVQF TQE+ATKAL+ T SK
Sbjct: 94 TKTLFVINFDPIRTRERDMERHFEPYGKVLNVRIRRNFAFVQFATQEDATKALDCTHNSK 153
Query: 125 LVDRVISVEYALKDDSERDDRY-DSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPA 183
++DRV+SVEYAL++D ER+DRY SPRR RSPSP YRRRPSPDYGR RSP
Sbjct: 154 ILDRVVSVEYALREDGEREDRYAGSPRR----------RSPSPVYRRRPSPDYGRPRSPE 203
Query: 184 YDRYNGPV--------YDQRRSPDHGRHRSPVPVYDRRRSP 216
YDRY GP +RRSPD+GR R+ P YD RSP
Sbjct: 204 YDRYKGPAPYERRRSPDYRRRSPDYGRARARSPGYDSSRSP 244
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL-- 125
+FV NFD TR+ D++R F YG V V ++ +AFV FE + +A A+ TD +
Sbjct: 4 VFVGNFD-YDTRQSDLERLFSKYGRVERVDMKSGYAFVYFEDERDAEDAIRGTDNTTFGY 62
Query: 126 VDRVISVEYALKDDSER 142
R +SVE+A ER
Sbjct: 63 ERRKLSVEWAKGFKGER 79
>gi|115456922|ref|NP_001052061.1| Os04g0118900 [Oryza sativa Japonica Group]
gi|38344865|emb|CAE01291.2| OSJNBa0020P07.8 [Oryza sativa Japonica Group]
gi|113563632|dbj|BAF13975.1| Os04g0118900 [Oryza sativa Japonica Group]
gi|116317923|emb|CAH65946.1| H0716A07.4 [Oryza sativa Indica Group]
gi|218194243|gb|EEC76670.1| hypothetical protein OsI_14641 [Oryza sativa Indica Group]
gi|222628274|gb|EEE60406.1| hypothetical protein OsJ_13581 [Oryza sativa Japonica Group]
Length = 245
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 134/190 (70%), Positives = 150/190 (78%), Gaps = 5/190 (2%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDG-SKSMANQRPTK 66
+GFAFVYFED+RD +AIR LD PFG RRRLSVEW+RG+RG RDG SK N +PTK
Sbjct: 35 SGFAFVYFEDERDGDEAIRALDGYPFGPGRRRLSVEWSRGDRGSRRDGYSKPPVNTKPTK 94
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
TLFVINFDPI TR DI+RHFEP+G + +VRIRRNFAFVQFETQEEATKALE+T +KL+
Sbjct: 95 TLFVINFDPINTRVTDIERHFEPFGKLSNVRIRRNFAFVQFETQEEATKALEATHSTKLL 154
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGGYGR--HSPYGRSPSPAYRRRPSPDYGRGRSPAY 184
DRVISVEYA +DD+ER DRYD R GGYGR SPY RS SP YR RPSPDYGR RSP Y
Sbjct: 155 DRVISVEYAFRDDTERGDRYDGAR-GGYGRRDDSPYRRSVSPVYRSRPSPDYGRQRSPVY 213
Query: 185 DRYN-GPVYD 193
Y+ PV D
Sbjct: 214 GSYDRSPVND 223
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+FV N D TR ++ R F YG + + ++ FAFV FE + + +A+ + D
Sbjct: 4 VFVGNLD-YDTRHSELDRLFYRYGRIDRIDMKSGFAFVYFEDERDGDEAIRALDGYPFGP 62
Query: 128 --RVISVEYALKDDSERDDRYDSP 149
R +SVE++ D R D Y P
Sbjct: 63 GRRRLSVEWSRGDRGSRRDGYSKP 86
>gi|116784190|gb|ABK23251.1| unknown [Picea sitchensis]
Length = 299
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 145/258 (56%), Positives = 175/258 (67%), Gaps = 25/258 (9%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR-GERG--RHRDGSKSMANQRP 64
+G+AF+Y ED+RDA DAIRGLDN FG RRRL+VEW + +RG R DG +S A P
Sbjct: 35 SGYAFIYMEDERDAEDAIRGLDNTDFGRQRRRLTVEWTKHADRGFRRFEDGRRSDAGLNP 94
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
TKTLFVINFDP T+ RD++RHFEPYG +++VRIRRNFAFVQ+E+QE+ATKALEST SK
Sbjct: 95 TKTLFVINFDPYSTKVRDLERHFEPYGKLIYVRIRRNFAFVQYESQEDATKALESTHMSK 154
Query: 125 LVDRVISVEYALKDDSERDDRYDSPRRG-GYGRHSPY---GRSPSPAYRRRP---SPDYG 177
++DRVI+VEYA +DS+R Y SP + YG+ + RS SP Y RRP SPDYG
Sbjct: 155 MLDRVITVEYAQGEDSDRRGGYSSPIQSRRYGKAADVRDRDRSASPRYGRRPVRGSPDYG 214
Query: 178 RGRSPAYDRYN-----------GPVYD---QRRSPDHGRHRSPVPVY-DRRRSPDYGRNR 222
R RSP Y R + P+Y +R S D+GR SPV V RR PDYGR
Sbjct: 215 RARSPIYARSSERHSHDYGRAPSPIYARHPERHSHDYGRAASPVYVSRPRRDIPDYGRVA 274
Query: 223 SPNFGRYRSRSPVRRSRT 240
SP RYRSRSPVRR R+
Sbjct: 275 SPVHERYRSRSPVRRLRS 292
>gi|242075010|ref|XP_002447441.1| hypothetical protein SORBIDRAFT_06g001100 [Sorghum bicolor]
gi|241938624|gb|EES11769.1| hypothetical protein SORBIDRAFT_06g001100 [Sorghum bicolor]
gi|448878272|gb|AGE46099.1| arginine/serine-rich splicing factor RS28 transcript I [Sorghum
bicolor]
Length = 238
Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 131/201 (65%), Positives = 150/201 (74%), Gaps = 7/201 (3%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
+GFAFVYFED+RD DAIR LD PFG RRRLSVEW+RG+R RDG+K AN +PT+T
Sbjct: 35 SGFAFVYFEDERDGNDAIRALDGYPFGPGRRRLSVEWSRGDRAARRDGNKPEANTKPTRT 94
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFVINFDPI TR DI+RHF P+GN+ VRIR+NFAFVQFET EEA KAL++T + L+D
Sbjct: 95 LFVINFDPINTRVSDIERHFAPFGNLSSVRIRKNFAFVQFETLEEARKALDATHATTLLD 154
Query: 128 RVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRY 187
RVISVEYA +DDSER DRYDSPRRGG SP YR RPSPDYGR SP Y Y
Sbjct: 155 RVISVEYAFRDDSERSDRYDSPRRGGGYGRR----GDSPVYRSRPSPDYGRPASPVYGSY 210
Query: 188 N-GPVYDQ-RRSPDHGRHRSP 206
+ PV D+ RRSP + R RSP
Sbjct: 211 DRSPVRDRYRRSPAY-RSRSP 230
>gi|47680295|gb|AAT37131.1| arginine/serine-rich splicing factor 1 [Zea mays]
gi|47680367|gb|AAT37122.1| arginine/serine-rich splicing factor 1 [Zea mays]
gi|195634831|gb|ACG36884.1| arginine/serine-rich splicing factor RSP41 [Zea mays]
Length = 240
Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 136/218 (62%), Positives = 154/218 (70%), Gaps = 21/218 (9%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
+GFAFVYFED+RD +DAIR LD PFG RRRLSVEW+RG+R RDG+K N +PTKT
Sbjct: 35 SGFAFVYFEDERDGSDAIRALDGYPFGPGRRRLSVEWSRGDRAARRDGNKPEVNTKPTKT 94
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFVINFDP+ TR DI+RHF P+GN+ VRIR+NFAFV+FET EEA KALE+T + L+D
Sbjct: 95 LFVINFDPMDTRVSDIERHFAPFGNISSVRIRKNFAFVRFETLEEARKALEATHATMLLD 154
Query: 128 RVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRY 187
RVISVEYA +DD ER DRYDSPRRGG SPAYR RPSPDYGR SP Y Y
Sbjct: 155 RVISVEYAFRDDDERSDRYDSPRRGGGYGRR----GDSPAYRSRPSPDYGRPASPVYGSY 210
Query: 188 NGPVYDQRRSPDHGRHRSPVPVYDR-RRSPDYGRNRSP 224
GR RS PV DR RRSP Y R+RSP
Sbjct: 211 -------------GRSRS--PVRDRYRRSPAY-RSRSP 232
>gi|116780574|gb|ABK21727.1| unknown [Picea sitchensis]
gi|116793253|gb|ABK26673.1| unknown [Picea sitchensis]
Length = 271
Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 142/244 (58%), Positives = 169/244 (69%), Gaps = 18/244 (7%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG-ERG--RHRDGSKSMANQRP 64
+G+AF+Y +D+RDA DAIRGLDN FG RRRL VEW + E+G R G +S +P
Sbjct: 35 SGYAFIYMDDERDAEDAIRGLDNREFGRQRRRLCVEWTKHPEKGFRRPEGGRRSTMYIKP 94
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
KTLFVINFDP T +D+++HFEPYG VL+VRIRRNFAFVQFE+QEEATKAL STD+SK
Sbjct: 95 AKTLFVINFDPADTGVKDLEKHFEPYGKVLNVRIRRNFAFVQFESQEEATKALHSTDKSK 154
Query: 125 LVDRVISVEYALKDDSERDDRYDSP-RRGGYGRHSP-YGRSPSPAYRRRP---SPDYGRG 179
++D +ISVEYA +DD +R SP RRG YGR + RS SP Y RR SPDYGR
Sbjct: 155 VLDSIISVEYAQRDDGDRRGGRSSPVRRGSYGRSAEGRDRSESPIYSRRALRDSPDYGRA 214
Query: 180 RSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRR---SPDYGRNRSPNFGRYRSRSPVR 236
SP Y R + +R SPD+GR S P+Y RR SPDYGR SP RYRSRSPV
Sbjct: 215 PSPIYARRS-----ERSSPDYGRAAS--PIYARRLQRDSPDYGRVLSPVHERYRSRSPVM 267
Query: 237 RSRT 240
RSR+
Sbjct: 268 RSRS 271
>gi|224035701|gb|ACN36926.1| unknown [Zea mays]
gi|414588139|tpg|DAA38710.1| TPA: arginine/serine-rich splicing factor 2 [Zea mays]
Length = 239
Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 129/202 (63%), Positives = 149/202 (73%), Gaps = 8/202 (3%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
+G+AFVYFED+RD DAIR LD PFG RRRLSVEW+RGE+ RDG+K AN +PT+T
Sbjct: 35 SGYAFVYFEDERDGNDAIRALDGYPFGPGRRRLSVEWSRGEQAGRRDGNKPEANTKPTRT 94
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFVINFDP+ TR DI+RHF P+GN+ VRIR+NFAFVQFET EEA KALE+T + L+D
Sbjct: 95 LFVINFDPMNTRVSDIERHFTPFGNISSVRIRKNFAFVQFETMEEARKALEATHATTLLD 154
Query: 128 RVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRY 187
RVISVEYA +DDSE DRY SPRRGG SP YR RPSPDYGR SP Y Y
Sbjct: 155 RVISVEYAFRDDSEVSDRYGSPRRGGGYGRR----GDSPVYRSRPSPDYGRPASPVYGSY 210
Query: 188 N--GPVYDQ-RRSPDHGRHRSP 206
+ GPV D+ RRSP + R RSP
Sbjct: 211 DGPGPVRDRYRRSPAY-RSRSP 231
>gi|47680305|gb|AAT37136.1| arginine/serine-rich splicing factor 2 [Zea mays]
gi|47680373|gb|AAT37127.1| arginine/serine-rich splicing factor 2 [Zea mays]
Length = 239
Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 126/201 (62%), Positives = 145/201 (72%), Gaps = 6/201 (2%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
+G+AFVYFED+RD DAIR LD PFG RRRLSVEW+RGE+ RDG+K AN +PT+T
Sbjct: 35 SGYAFVYFEDERDGNDAIRALDGYPFGPGRRRLSVEWSRGEQAGRRDGNKPEANTKPTRT 94
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFVINFDP+ TR DI+RHF P+GN+ VRIR+NFAFVQFET EEA KALE+T + L+D
Sbjct: 95 LFVINFDPMNTRVSDIERHFTPFGNISSVRIRKNFAFVQFETMEEARKALEATHATTLLD 154
Query: 128 RVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRY 187
RVISVEYA +DDSE DRY SPRRGG SP YR RPSPDYGR SP Y Y
Sbjct: 155 RVISVEYAFRDDSEVSDRYGSPRRGGGYGRR----GDSPVYRSRPSPDYGRPASPVYGSY 210
Query: 188 N--GPVYDQRRSPDHGRHRSP 206
+ GPV D+ R R RSP
Sbjct: 211 DGPGPVRDRYRRSLAYRSRSP 231
>gi|116786163|gb|ABK24003.1| unknown [Picea sitchensis]
Length = 289
Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 138/260 (53%), Positives = 164/260 (63%), Gaps = 35/260 (13%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR-GERG--RHRDGSKSMANQRP 64
+G+AFVY ED+RDA DAIR LD FG RRRL+VEW + ERG R DG +S+ +P
Sbjct: 35 SGYAFVYMEDERDAEDAIRALDKTEFGRQRRRLTVEWTKHAERGLRRSEDGRRSVTGLKP 94
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
TKTLFVINFDP TR RD++RHFEPYG VL+VRIRRNFAF+ + TQEEATKA ++T S
Sbjct: 95 TKTLFVINFDPYDTRARDLERHFEPYGKVLNVRIRRNFAFIHYGTQEEATKAFDATHMST 154
Query: 125 LVDRVISVEYALKDDSERDDRYDSPRRGG-YGRHSP----------------------YG 161
L+DRVI+VEYA ++D R SP RGG YGR S YG
Sbjct: 155 LLDRVITVEYAQREDGNRRGGPSSPIRGGRYGRSSEDHGRDRSASPIYGRRAMRGSPDYG 214
Query: 162 RSPSPAYRRRP---SPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPV-PVYDRRRSPD 217
R+PSP Y RRP SPDYGR SP Y R ++ D+GR SPV ++ S D
Sbjct: 215 RAPSPTYARRPERCSPDYGRATSPIYSR-----RPEKHGSDYGRAASPVYASRPQKNSLD 269
Query: 218 YGRNRSPNFGRYRSRSPVRR 237
YGR+ SP R RSRSPVRR
Sbjct: 270 YGRDASPLLERDRSRSPVRR 289
>gi|413917962|gb|AFW57894.1| arginine/serine-rich splicing factor 1 variant 3 [Zea mays]
Length = 223
Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 125/200 (62%), Positives = 142/200 (71%), Gaps = 17/200 (8%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
+GFAFVYFED+RD +DAIR LD PFG RRRLSVEW+RG+R RDG+K N +PTKT
Sbjct: 35 SGFAFVYFEDERDGSDAIRALDGYPFGPGRRRLSVEWSRGDRAARRDGNKPEVNTKPTKT 94
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFVINFDP+ TR DI+RHF P+GN+ VRIR+NFAFV+FET EEA KALE+T + L+D
Sbjct: 95 LFVINFDPMDTRVSDIERHFAPFGNISSVRIRKNFAFVRFETLEEARKALEATHATMLLD 154
Query: 128 RVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRY 187
RVISVEYA +DD ER DRYDSPRRGG SPAYR RPSPDYGR SP Y Y
Sbjct: 155 RVISVEYAFRDDDERSDRYDSPRRGGGYGRR----GDSPAYRSRPSPDYGRPASPVYGSY 210
Query: 188 NGPVYDQRRSPDHGRHRSPV 207
GR RSPV
Sbjct: 211 -------------GRSRSPV 217
>gi|242037183|ref|XP_002465986.1| hypothetical protein SORBIDRAFT_01g049590 [Sorghum bicolor]
gi|241919840|gb|EER92984.1| hypothetical protein SORBIDRAFT_01g049590 [Sorghum bicolor]
Length = 266
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/233 (57%), Positives = 169/233 (72%), Gaps = 21/233 (9%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
G+AF+YFED+RDA DAIR LDN+ FGYDRR+LSVEW+R + + + +PT+T
Sbjct: 35 TGYAFIYFEDERDAEDAIRRLDNVSFGYDRRKLSVEWSRQVEPVPKSRDRPTGDVKPTRT 94
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFVINFDP+RT+ +DI+RHFEPYG + ++RIRRNFAFVQ+ETQEEA+ A+++TD+S ++D
Sbjct: 95 LFVINFDPMRTKVQDIERHFEPYGKIANIRIRRNFAFVQYETQEEASAAVKNTDKSTILD 154
Query: 128 RVISVEYAL-KDDSERDDRYDSPRRGGYGRH--SPYGRSPSPAYRRRPSPDYG-RGRSPA 183
RV++VEYA DDSERDDRY SP+RG Y R +PY RSPSP YRR SPDY RGR P
Sbjct: 155 RVVTVEYAFRDDDSERDDRYGSPKRGAYDRRRGNPYLRSPSPRYRREYSPDYDRRGRYPG 214
Query: 184 YDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRY-RSRSPV 235
YDR +G +Y++R PVYDR Y R RSP + RY R RSPV
Sbjct: 215 YDRRDGAMYERR-----------SPVYDR-----YNRGRSPVYDRYNRGRSPV 251
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV- 126
+F NFD TR+ D++R F YG++ + ++ +AF+ FE + +A A+ D
Sbjct: 4 VFCGNFDH-DTRQYDLERLFSKYGSISRIDMKTGYAFIYFEDERDAEDAIRRLDNVSFGY 62
Query: 127 -DRVISVEYA 135
R +SVE++
Sbjct: 63 DRRKLSVEWS 72
>gi|148909122|gb|ABR17662.1| unknown [Picea sitchensis]
Length = 337
Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 144/295 (48%), Positives = 179/295 (60%), Gaps = 63/295 (21%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR-GERG--RHRDGSKSMANQRP 64
+GFAF+Y ED++DA DAIRGLD+ FG RRRLSVEW + +RG R DG +S+ + +P
Sbjct: 35 SGFAFIYMEDEQDAEDAIRGLDSTEFGTQRRRLSVEWTKNADRGVRRSEDGRRSVTDLKP 94
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
TKTLFVINFD T+ DI+RHFEPYG +L+VRIRRNFAFVQ+E QE+ATKALEST SK
Sbjct: 95 TKTLFVINFDSYNTKVEDIERHFEPYGKLLNVRIRRNFAFVQYELQEDATKALESTHLSK 154
Query: 125 LVDRVISVEYALKDDSERDDRYDSPRRGG-----------------------------YG 155
++D+V++V+YA ++D +R R SP R G YG
Sbjct: 155 MLDKVLTVKYAQREDGDRRGRRSSPIRRGRYSRAGEDHDRDRSASPLHGRRAVRGSPDYG 214
Query: 156 RHSP-------------YGRSPSPAYRRRP---SPDYGRG-----------RSPAYDRYN 188
R S YGR+PSP Y RRP SPDYGR RSP Y R
Sbjct: 215 RASSPIHGRRPERRSPDYGRAPSPIYARRPERRSPDYGRAPSPIYAKRPERRSPDYGRAP 274
Query: 189 GPVYD---QRRSPDHGRHRSPVPVYDRRR-SPDYGRNRSPNFGRYRSRSPVRRSR 239
P+Y +RRSPD+GR SPV R++ SPDYGR SP + RSRSP+R+SR
Sbjct: 275 SPIYAKRPERRSPDYGRAASPVYASRRQKNSPDYGRVASPVHEQDRSRSPMRQSR 329
Score = 39.7 bits (91), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
K L+ N + TR+ +I+R F YG V V ++ FAF+ E +++A A+ D ++
Sbjct: 1 MKPLYCGNVE-YETRQSEIERLFGKYGKVDRVDMKSGFAFIYMEDEQDAEDAIRGLDSTE 59
Query: 125 LVD--RVISVEYALKDD 139
R +SVE+ D
Sbjct: 60 FGTQRRRLSVEWTKNAD 76
>gi|217071698|gb|ACJ84209.1| unknown [Medicago truncatula]
Length = 294
Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 135/258 (52%), Positives = 165/258 (63%), Gaps = 25/258 (9%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGS---KSMANQRP 64
+GFAF+Y E +RDA AIR LD FG RR+ VEW + ER R G KS N +P
Sbjct: 35 SGFAFIYMEGERDAEYAIRRLDQTEFGRKGRRIRVEWTKAERDNRRSGGDSKKSSTNTKP 94
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
+KTLF+INFDP+ TR RD++RHF+PYG + ++RIRRNFAF+QFETQEEATKALE+T+ SK
Sbjct: 95 SKTLFIINFDPVHTRTRDLERHFDPYGKISNLRIRRNFAFIQFETQEEATKALEATNLSK 154
Query: 125 LVDRVISVEYALKDDSERDDRYDSPRR------GGYGRHSP-----YGRSPSPAYRRRPS 173
+DRVI+VEYA++DD + D Y RR G YGR SP GRSPSP R R S
Sbjct: 155 FMDRVITVEYAIRDDDVKRDGYSPDRRGRGSPDGRYGRGSPDGRYGRGRSPSPYRRGRGS 214
Query: 174 PDYGRGRSPAYDRYNG--PVYDQRRSPDHGRH--RSPVPVY-------DRRRSPDYGRNR 222
PDYGRG +PA G P Y++ SP +GR+ RSP P + R SP Y R
Sbjct: 215 PDYGRGSNPASRPEPGGSPKYERAESPANGRYDSRSPPPRGSNPPSRPEARGSPKYERAE 274
Query: 223 SPNFGRYRSRSPVRRSRT 240
SP RY SRSP R R+
Sbjct: 275 SPMNRRYDSRSPPPRDRS 292
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 10/103 (9%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
K +F N D R+ D++R F YG + V ++ FAF+ E + +A A+ D+++
Sbjct: 1 MKPIFCGNLD-FDARQSDVERLFRKYGKIDRVDLKSGFAFIYMEGERDAEYAIRRLDQTE 59
Query: 125 L--VDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPS 165
R I VE+ +ERD+R R GG + S PS
Sbjct: 60 FGRKGRRIRVEWT---KAERDNR----RSGGDSKKSSTNTKPS 95
>gi|357165299|ref|XP_003580336.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like
[Brachypodium distachyon]
Length = 261
Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 136/220 (61%), Positives = 156/220 (70%), Gaps = 20/220 (9%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDG----SKSMANQR 63
+GFAFVYFED+RD DAIR LD +PFG RR+LSVEW+RG+RG RD SK N +
Sbjct: 35 SGFAFVYFEDERDGDDAIRALDGVPFGPGRRKLSVEWSRGDRGTRRDDRDGYSKPPVNTK 94
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRS 123
PTKTLFVINFDPI TR DI+RHF+P+G + +VRIR+NFAFVQFETQEEATKAL++T +
Sbjct: 95 PTKTLFVINFDPINTRVSDIERHFDPFGKISNVRIRKNFAFVQFETQEEATKALDATHST 154
Query: 124 KLVDRVISVEYALKDDSERDDRYDSPRRGGYGRH-------SPYGRSPSPAYRR-RPSPD 175
KL+DRVISVEYA +DDSE DRYD P RGG G S Y RS SP YRR RPSPD
Sbjct: 155 KLLDRVISVEYAFRDDSEPGDRYDRPIRGGGGGGGYGRQDDSSYRRSVSPVYRRSRPSPD 214
Query: 176 YGRGRSPA--------YDRYNGPVYDQRRSPDHGRHRSPV 207
YGR RSPA YDR PV D+ R R RSP+
Sbjct: 215 YGRPRSPAELSPVYGSYDRSRSPVRDRYRGRSPLRSRSPL 254
>gi|388513547|gb|AFK44835.1| unknown [Medicago truncatula]
Length = 294
Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 134/258 (51%), Positives = 165/258 (63%), Gaps = 25/258 (9%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGS---KSMANQRP 64
+GFAF+Y ED+RDA AIR LD FG RR+ V W + ER R G KS N +P
Sbjct: 35 SGFAFIYMEDERDAEYAIRRLDQTEFGRKGRRIRVGWTKAERDNRRSGGDSKKSSTNTKP 94
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
+KTLF+INFDP+ TR RD++RHF+PYG + ++RIRRNFAF+QFETQEEATKALE+T+ SK
Sbjct: 95 SKTLFIINFDPVHTRTRDLERHFDPYGKISNLRIRRNFAFIQFETQEEATKALEATNLSK 154
Query: 125 LVDRVISVEYALKDDSERDDRYDSPRR------GGYGRHSP-----YGRSPSPAYRRRPS 173
+DRVI+VEYA++DD + D Y RR G YGR SP GRSPSP R R S
Sbjct: 155 FMDRVITVEYAIRDDDVKRDGYSPDRRGRGSPDGRYGRGSPDGRYGRGRSPSPYRRGRGS 214
Query: 174 PDYGRGRSPAY--DRYNGPVYDQRRSPDHGRH--RSPVPVY-------DRRRSPDYGRNR 222
PDYGRG +PA + P Y++ SP +GR+ RSP P + R SP Y R
Sbjct: 215 PDYGRGSNPASRPEPRGSPKYERAESPANGRYDSRSPPPRGSNPPSRPEARGSPKYERAE 274
Query: 223 SPNFGRYRSRSPVRRSRT 240
SP RY SRSP R R+
Sbjct: 275 SPMNRRYDSRSPPPRDRS 292
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
K +F N D R+ D++R F YG + V ++ FAF+ E + +A A+ D+++
Sbjct: 1 MKPIFCGNLD-FDARQSDVERLFRKYGKIDRVDLKSGFAFIYMEDERDAEYAIRRLDQTE 59
Query: 125 L--VDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPS 165
R I V + +ERD+R R GG + S PS
Sbjct: 60 FGRKGRRIRVGWT---KAERDNR----RSGGDSKKSSTNTKPS 95
>gi|195628072|gb|ACG35866.1| arginine/serine-rich splicing factor RSP41 [Zea mays]
Length = 255
Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 124/218 (56%), Positives = 160/218 (73%), Gaps = 9/218 (4%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+AF+YFED+RDA DAIR LDN+ FGY+RRRLSVEW+R + + + +PT+TL
Sbjct: 36 GYAFIYFEDERDAEDAIRRLDNVSFGYNRRRLSVEWSRQVEPVPKSRDRPTGDVKPTRTL 95
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FVINFDPIRT+ +DI++HFEPYG + ++RIRRNFAFVQ+ETQEEA+ A+++TD+S ++DR
Sbjct: 96 FVINFDPIRTKVQDIEKHFEPYGKIANIRIRRNFAFVQYETQEEASAAVKNTDKSTILDR 155
Query: 129 VISVEYALKDDSERDDRYDS-PRRGGYGRH--SPYGRSPSPAYRRRPSPDYG-RGRSPAY 184
V++VEYA +DD D P++G Y R SPY RSPSP YRR PDYG RGR P Y
Sbjct: 156 VVTVEYAFRDDDGDRDDRYDIPKQGAYDRRGGSPYMRSPSPRYRRDYGPDYGRRGRYPGY 215
Query: 185 DRYNGPVYDQRRSPDHGRH---RSPV-PVYDRRRSPDY 218
R +G +Y +RRSP + R+ RSP YDRRRSP Y
Sbjct: 216 GRRDGAMY-ERRSPVYDRYGGGRSPAYDRYDRRRSPGY 252
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL-- 125
+F NFD TR+ D++R F YG + + ++ +AF+ FE + +A A+ D
Sbjct: 4 VFCGNFDH-DTRQYDLERLFSKYGPISRIDMKLGYAFIYFEDERDAEDAIRRLDNVSFGY 62
Query: 126 VDRVISVEYA 135
R +SVE++
Sbjct: 63 NRRRLSVEWS 72
>gi|255539555|ref|XP_002510842.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
gi|223549957|gb|EEF51444.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
Length = 331
Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 136/245 (55%), Positives = 161/245 (65%), Gaps = 29/245 (11%)
Query: 15 FEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGS--KSMANQRPTKTLFVIN 72
ED+RDA DAIRGLD I FG RRL VEW + ERG R G+ +S N RP+KTLFVIN
Sbjct: 1 MEDERDAEDAIRGLDRIEFGRKGRRLRVEWTKQERGIRRPGNSRRSSTNTRPSKTLFVIN 60
Query: 73 FDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISV 132
FDP TR +D++RHFEPYG ++ VRIRRNFAFVQ+E+Q++ATKALE+T+ SKL+DRVISV
Sbjct: 61 FDPHHTRTKDLERHFEPYGRIVSVRIRRNFAFVQYESQDDATKALEATNMSKLMDRVISV 120
Query: 133 EYALKDDSERDDRYD-------SPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYD 185
EYA++DD ER + Y SP R + R RS SP R R SPDYGRG SP
Sbjct: 121 EYAVRDDDERRNGYSPDRGRDRSPDRRSHDRK----RSSSPYRRERGSPDYGRGPSP--- 173
Query: 186 RYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGR--NRSP--------NFGRYRSRSPV 235
GP +R SPD+GR RSP P R SPDYGR +RSP + GR SRSP
Sbjct: 174 ---GPYRRERASPDYGRRRSPSPYKRDRASPDYGRASSRSPYRRERPGSDHGRGSSRSPY 230
Query: 236 RRSRT 240
R R
Sbjct: 231 HRERA 235
Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 162 RSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRN 221
RS SP R R +PD GRG S P SP++GR SP +++ R SP+ G
Sbjct: 261 RSRSPYGRERTNPDNGRGSS------RSPYEKDVNSPENGRRTSPNSMHEERDSPNEGGI 314
Query: 222 RSPNFGRYRSRSP 234
SP R++SRSP
Sbjct: 315 ESPMHERFQSRSP 327
>gi|212722812|ref|NP_001131484.1| uncharacterized protein LOC100192821 [Zea mays]
gi|194691660|gb|ACF79914.1| unknown [Zea mays]
gi|224032781|gb|ACN35466.1| unknown [Zea mays]
gi|413957159|gb|AFW89808.1| arginine/serine-rich splicing factor RSP41 isoform 1 [Zea mays]
gi|413957160|gb|AFW89809.1| arginine/serine-rich splicing factor RSP41 isoform 2 [Zea mays]
gi|413957161|gb|AFW89810.1| arginine/serine-rich splicing factor RSP41 isoform 3 [Zea mays]
Length = 255
Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 124/218 (56%), Positives = 160/218 (73%), Gaps = 9/218 (4%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+AF+YFED+RDA DAIR LDN+ FGY+RRRLSVEW+R + + + +PT+TL
Sbjct: 36 GYAFIYFEDERDAEDAIRRLDNVSFGYNRRRLSVEWSRQVEPVPKSRDRPTGDVKPTRTL 95
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FVINFDPIRT+ +DI++HFEPYG + ++RIRRNFAFVQ+ETQEEA+ A+++TD+S ++DR
Sbjct: 96 FVINFDPIRTKVQDIEKHFEPYGKIANIRIRRNFAFVQYETQEEASAAVKNTDKSTILDR 155
Query: 129 VISVEYALKDDSERDDRYDS-PRRGGYGRH--SPYGRSPSPAYRRRPSPDYG-RGRSPAY 184
V++VEYA +DD D P++G Y R SPY RSPSP YRR PDYG RGR P Y
Sbjct: 156 VVTVEYAFRDDDGDRDDRYDIPKQGAYDRRGGSPYMRSPSPRYRRDYVPDYGRRGRYPGY 215
Query: 185 DRYNGPVYDQRRSPDHGRH---RSPV-PVYDRRRSPDY 218
R +G +Y +RRSP + R+ RSP YDRRRSP Y
Sbjct: 216 GRRDGAMY-ERRSPVYDRYGGGRSPAYDRYDRRRSPGY 252
Score = 37.0 bits (84), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL-- 125
+F NFD TR+ D++R F YG + + ++ +AF+ FE + +A A+ D
Sbjct: 4 VFCGNFDH-DTRQYDLERLFSKYGPISRIDMKLGYAFIYFEDERDAEDAIRRLDNVSFGY 62
Query: 126 VDRVISVEYA 135
R +SVE++
Sbjct: 63 NRRRLSVEWS 72
>gi|41323931|gb|AAS00039.1| splicing factor-like protein [Vitis riparia]
Length = 478
Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 130/227 (57%), Positives = 156/227 (68%), Gaps = 13/227 (5%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG--RHRDGSKSMANQRPT 65
GFAF+Y ED+RDA DAIRGLD FG RRL VEW + ERG R +S N RP
Sbjct: 35 TGFAFIYMEDERDAEDAIRGLDRTGFGRKGRRLRVEWTKQERGIRRPSGSRRSSTNLRPA 94
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
KTLFVINFDP TR RD++RHF+PYG +L++RIRRNFAF+Q+E+QE+AT+ALE+T+ SKL
Sbjct: 95 KTLFVINFDPYNTRTRDLERHFDPYGKILNIRIRRNFAFIQYESQEDATRALEATNMSKL 154
Query: 126 VDRVISVEYALKDDSERDDRY--DSPRRGGYGRHS-PYGRSPSPAYRRRPSPDYGRGRSP 182
+DRVISVEYA++DD ER + Y D RR S GRS SP R R SPDYGRG SP
Sbjct: 155 MDRVISVEYAVRDDDERRNGYSPDGRRRDKSSERSYDKGRSLSPYRRERGSPDYGRGSSP 214
Query: 183 -AYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGR 228
AY R +R SPD+GR SP P R PD+GR+RSP+ R
Sbjct: 215 SAYRR-------ERASPDYGRDPSPSPRRRDRAMPDHGRSRSPSHHR 254
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 161 GRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGR 220
G S SP R PDY RG S + P + SPD+ R SP + R SP+YG
Sbjct: 403 GPSQSPQQGERALPDYARGPS------DSPYQRESISPDYDRGPSPNSKREERDSPNYGG 456
Query: 221 NRSPNFGRYRSRSPVRRSRT 240
+ SP GRYRSRSP R R+
Sbjct: 457 SASPMNGRYRSRSPPARERS 476
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
+ +F NFD R+ D++R F YG V V ++ FAF+ E + +A A+ DR+
Sbjct: 1 MRPIFCGNFD-YDARQSDLERLFRRYGKVDRVDMKTGFAFIYMEDERDAEDAIRGLDRTG 59
Query: 125 L--VDRVISVEYALKD 138
R + VE+ ++
Sbjct: 60 FGRKGRRLRVEWTKQE 75
>gi|359490360|ref|XP_002279907.2| PREDICTED: arginine/serine-rich-splicing factor RSP40-like [Vitis
vinifera]
Length = 480
Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 130/227 (57%), Positives = 156/227 (68%), Gaps = 13/227 (5%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG--RHRDGSKSMANQRPT 65
GFAF+Y ED+RDA DAIRGLD FG RRL VEW + ERG R +S N RP
Sbjct: 37 TGFAFIYMEDERDAEDAIRGLDRTGFGRKGRRLRVEWTKQERGIRRPSGSRRSSTNLRPA 96
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
KTLFVINFDP TR RD++RHF+PYG +L++RIRRNFAF+Q+E+QE+AT+ALE+T+ SKL
Sbjct: 97 KTLFVINFDPYNTRTRDLERHFDPYGKILNIRIRRNFAFIQYESQEDATRALEATNMSKL 156
Query: 126 VDRVISVEYALKDDSERDDRY--DSPRRGGYGRHS-PYGRSPSPAYRRRPSPDYGRGRSP 182
+DRVISVEYA++DD ER + Y D RR S GRS SP R R SPDYGRG SP
Sbjct: 157 MDRVISVEYAVRDDDERRNGYSPDGRRRDKSSERSYDKGRSLSPYRRERGSPDYGRGSSP 216
Query: 183 -AYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGR 228
AY R +R SPD+GR SP P R PD+GR+RSP+ R
Sbjct: 217 SAYRR-------ERASPDYGRDPSPSPRRRDRAIPDHGRSRSPSHHR 256
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 161 GRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGR 220
G S SP R PDY RG S + P + SPD+ R SP + R SP+YG
Sbjct: 405 GPSQSPQQGERALPDYSRGPS------DSPYQRESISPDYDRGPSPNSKREERDSPNYGG 458
Query: 221 NRSPNFGRYRSRSPVRRSRT 240
+ SP GRYRSRSP R R+
Sbjct: 459 SASPMNGRYRSRSPPARERS 478
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
+ +F NFD R+ D++R F YG V V ++ FAF+ E + +A A+ DR+
Sbjct: 3 MRPIFCGNFD-YDARQSDLERLFRRYGKVDRVDMKTGFAFIYMEDERDAEDAIRGLDRTG 61
Query: 125 L--VDRVISVEYALKD 138
R + VE+ ++
Sbjct: 62 FGRKGRRLRVEWTKQE 77
>gi|147863191|emb|CAN82624.1| hypothetical protein VITISV_021436 [Vitis vinifera]
Length = 479
Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 130/227 (57%), Positives = 156/227 (68%), Gaps = 13/227 (5%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG--RHRDGSKSMANQRPT 65
GFAF+Y ED+RDA DAIRGLD FG RRL VEW + ERG R +S N RP
Sbjct: 35 TGFAFIYMEDERDAEDAIRGLDRTGFGRKGRRLRVEWTKQERGIRRPSGSRRSSTNLRPA 94
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
KTLFVINFDP TR RD++RHF+PYG +L++RIRRNFAF+Q+E+QE+AT+ALE+T+ SKL
Sbjct: 95 KTLFVINFDPYNTRTRDLERHFDPYGKILNIRIRRNFAFIQYESQEDATRALEATNMSKL 154
Query: 126 VDRVISVEYALKDDSERDDRY--DSPRRGGYGRHS-PYGRSPSPAYRRRPSPDYGRGRSP 182
+DRVISVEYA++DD ER + Y D RR S GRS SP R R SPDYGRG SP
Sbjct: 155 MDRVISVEYAVRDDDERRNGYSPDGRRRDKSSERSYDKGRSLSPYRRERGSPDYGRGSSP 214
Query: 183 -AYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGR 228
AY R +R SPD+GR SP P R PD+GR+RSP+ R
Sbjct: 215 SAYRR-------ERASPDYGRDPSPSPRRRDRAIPDHGRSRSPSHHR 254
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 148 SPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPV 207
SP+R Y R G S SP R PDY RG S + P + SPD+ R SP
Sbjct: 395 SPQRREYDR----GPSQSPQQGERALPDYSRGPS------DSPYQRESISPDYDRGPSPN 444
Query: 208 PVYDRRRSPDYGRNRSPNFGRYRSRSPVRRSRT 240
+ R SP+YG + SP GRYRSRSP R R+
Sbjct: 445 SKREERDSPNYGGSASPMNGRYRSRSPPARERS 477
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
+ +F NFD R+ D++R F YG V V ++ FAF+ E + +A A+ DR+
Sbjct: 1 MRPIFCGNFD-YDARQSDLERLFRRYGKVDRVDMKTGFAFIYMEDERDAEDAIRGLDRTG 59
Query: 125 L--VDRVISVEYALKD 138
R + VE+ ++
Sbjct: 60 FGRKGRRLRVEWTKQE 75
>gi|414588138|tpg|DAA38709.1| TPA: hypothetical protein ZEAMMB73_778058 [Zea mays]
Length = 211
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 101/146 (69%), Positives = 118/146 (80%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
+G+AFVYFED+RD DAIR LD PFG RRRLSVEW+RGE+ RDG+K AN +PT+T
Sbjct: 35 SGYAFVYFEDERDGNDAIRALDGYPFGPGRRRLSVEWSRGEQAGRRDGNKPEANTKPTRT 94
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFVINFDP+ TR DI+RHF P+GN+ VRIR+NFAFVQFET EEA KALE+T + L+D
Sbjct: 95 LFVINFDPMNTRVSDIERHFTPFGNISSVRIRKNFAFVQFETMEEARKALEATHATTLLD 154
Query: 128 RVISVEYALKDDSERDDRYDSPRRGG 153
RVISVEYA +DDSE DRY SPRRGG
Sbjct: 155 RVISVEYAFRDDSEVSDRYGSPRRGG 180
>gi|449463727|ref|XP_004149583.1| PREDICTED: arginine/serine-rich-splicing factor RSP40-like [Cucumis
sativus]
Length = 376
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 131/242 (54%), Positives = 152/242 (62%), Gaps = 27/242 (11%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGS----------- 56
+GFAF+Y ED+RDA DAIR LD FG RRL VEW + ERG R G
Sbjct: 35 SGFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGIRRPGPGGGGGGGGGGG 94
Query: 57 -----KSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQE 111
+S N RP+KTLFVINFDP TR RD++RHF+PYG +L VRIRRNFAFVQ+E QE
Sbjct: 95 GGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYELQE 154
Query: 112 EATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRR 171
+AT+ALE T+ SKL+DRVISVEYA++DD ++ + Y SP R RS SP R R
Sbjct: 155 DATRALELTNMSKLMDRVISVEYAVRDDDDKRNGY-SPDRNRDRSPDRKRRSSSPYRRER 213
Query: 172 PSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRR---SPDYGRNRSPNFGR 228
SPDYG G S P QR SPD+G RSP P Y R R SPDYGR RSPN
Sbjct: 214 GSPDYGNGIS------RSPYRRQRASPDYGSRRSPSP-YQRERERGSPDYGRGRSPNHSP 266
Query: 229 YR 230
YR
Sbjct: 267 YR 268
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
K +F NF+ R+ D++R F YG V V ++ FAF+ E + +A A+ + DR +
Sbjct: 1 MKPIFCGNFE-YDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRRE 59
Query: 125 L--VDRVISVEYALKD 138
R + VE+ ++
Sbjct: 60 FGRKGRRLRVEWTKQE 75
>gi|326494512|dbj|BAJ90525.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 247
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 132/255 (51%), Positives = 161/255 (63%), Gaps = 30/255 (11%)
Query: 5 LHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER--GRHRDGSKSMANQ 62
+ GFAFVY ED+RDA DAIR LD FG RRL VEW + +R GR +G +S ++
Sbjct: 2 FNIEGFAFVYMEDERDAEDAIRRLDRTDFGRTGRRLRVEWTKEDRSGGRKGNGKRSPSSV 61
Query: 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDR 122
+PTKTLFVINFDPI TR RD+++HF+ YG + ++RIRRNFAFVQ+ETQ++ATKAL+ T+
Sbjct: 62 KPTKTLFVINFDPINTRTRDLEKHFDLYGKIANIRIRRNFAFVQYETQKDATKALDGTNG 121
Query: 123 SKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRH-----------SPYGRSPSPAYRRR 171
S ++DRVISVEYAL+DD E+ + Y RRGG R SPYGR R R
Sbjct: 122 STVMDRVISVEYALRDDDEKRNGYSPDRRGGRDRSPDRRDNRGRSASPYGRG-----RER 176
Query: 172 PSPDYGRGR---SPAYDRYNGPVYDQRRSPDHGRHRSPVPVY-DRRRSPDYGRNR---SP 224
SPDYGRGR SP Y + R SPD+ R SP D R SP Y R R SP
Sbjct: 177 GSPDYGRGRERGSPDYGKGGA-----RDSPDYVRGGSPYGSKGDDRASPKYDRERREASP 231
Query: 225 NFGRYRSRSPVRRSR 239
+ R RSRSP R R
Sbjct: 232 AYDRRRSRSPAREDR 246
>gi|357145457|ref|XP_003573649.1| PREDICTED: arginine/serine-rich-splicing factor RSP40-like
[Brachypodium distachyon]
Length = 277
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 132/252 (52%), Positives = 158/252 (62%), Gaps = 30/252 (11%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGS--KSMANQRPT 65
GFAFVY ED+RDA DAI LD FG RRL VEW + +R R G+ +S + +PT
Sbjct: 35 TGFAFVYMEDERDAEDAIHRLDRTDFGRKGRRLRVEWTKEDRSGGRKGNPKRSPTSVKPT 94
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
KTLFVINFDPI TR RD+++HF+ YG + ++RIRRNFAFVQ+E+QE+ATKAL+ T+ S L
Sbjct: 95 KTLFVINFDPISTRTRDLEKHFDQYGKIANIRIRRNFAFVQYESQEDATKALDGTNGSTL 154
Query: 126 VDRVISVEYALKDDSERDDRYDSPRRGGYGRH-----------SPYGRSPSPAYRRRPSP 174
+DRVISVEYAL+DD E+ + Y RRGG R SPYGR R R SP
Sbjct: 155 MDRVISVEYALRDDDEKRNGYSPERRGGRDRSPDRRDNRGRSGSPYGRG-----RERGSP 209
Query: 175 DYGRGR---SPAYDRYNGPVYDQRRSPDHGRHRSP-VPVYDRRRSPDYGRNR---SPNFG 227
DYGRGR SP Y + R SPD+ R SP D RRSP Y R R SP +
Sbjct: 210 DYGRGRERGSPDYGKGGA-----RGSPDYVRGGSPYAGKGDERRSPKYDRERREASPGYD 264
Query: 228 RYRSRSPVRRSR 239
R RSRSP R R
Sbjct: 265 RPRSRSPAREDR 276
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL-- 125
+F N D R+ +I+R F YG V V I+ FAFV E + +A A+ DR+
Sbjct: 4 IFCGNLD-YDARQSEIERLFSKYGRVERVDIKTGFAFVYMEDERDAEDAIHRLDRTDFGR 62
Query: 126 VDRVISVEYALKDDS 140
R + VE+ +D S
Sbjct: 63 KGRRLRVEWTKEDRS 77
>gi|224136870|ref|XP_002322436.1| predicted protein [Populus trichocarpa]
gi|222869432|gb|EEF06563.1| predicted protein [Populus trichocarpa]
Length = 343
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 136/254 (53%), Positives = 162/254 (63%), Gaps = 31/254 (12%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKS--MANQRPT 65
+GFAF+Y ED+RDA DAIRGLD + FG RRL VEW + ERG R G S N RP+
Sbjct: 35 SGFAFIYMEDERDAEDAIRGLDRVEFGRKGRRLRVEWTKQERGIRRPGGTSRRSTNTRPS 94
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
KTLFVINFDP TR +D++RHFEPYG ++ VRIRRNFAFVQ+E QE+ATKAL++T+ SKL
Sbjct: 95 KTLFVINFDPHHTRTKDLERHFEPYGRIVSVRIRRNFAFVQYEAQEDATKALDATNLSKL 154
Query: 126 VDRVISVEYALKDDSERDDRYDSPRRGGYG------------------RHSP-YGRSPSP 166
+DRVISVEYA++DD ER D Y R R SP YGR PSP
Sbjct: 155 LDRVISVEYAVRDDDERKDGYSPDRSRDRSPDRRGHDRRRSPSPYRRERGSPDYGRGPSP 214
Query: 167 AYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNF 226
+ R SPDYGR RSP+ R + R SPD+GR S P Y R R+ G+ SP
Sbjct: 215 YRKERGSPDYGRRRSPSPYRRD------RASPDYGRGTSRSP-YRRERA---GKRISPEN 264
Query: 227 GRYRSRSPVRRSRT 240
GR SRSP RR R+
Sbjct: 265 GRGPSRSPYRRERS 278
Score = 37.4 bits (85), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL-- 125
+F NF+ R+ +++R F+ YG V V ++ FAF+ E + +A A+ DR +
Sbjct: 4 IFCGNFE-YDARQTELERLFKRYGRVERVDMKSGFAFIYMEDERDAEDAIRGLDRVEFGR 62
Query: 126 VDRVISVEYALKD 138
R + VE+ ++
Sbjct: 63 KGRRLRVEWTKQE 75
>gi|218189952|gb|EEC72379.1| hypothetical protein OsI_05650 [Oryza sativa Indica Group]
Length = 603
Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 136/254 (53%), Positives = 157/254 (61%), Gaps = 32/254 (12%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER--GRHRDGSKSMANQRPT 65
+GFAFVY ED+RDA +AI LD I FG RRL VEW + +R GR + +S N RPT
Sbjct: 359 SGFAFVYMEDERDADEAIHRLDRIEFGRKGRRLRVEWTKEDRSGGRRGNSKRSPNNTRPT 418
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
KTLFVINFDPI TR RD++RHF+ YG + +VRIRRNFAFVQ+E QE+ATKALE T+ S L
Sbjct: 419 KTLFVINFDPINTRTRDLERHFDQYGKISNVRIRRNFAFVQYELQEDATKALEGTNGSTL 478
Query: 126 VDRVISVEYALKDDSERDDRYDSPRRG--------GY-GRH-SPYGRSPSPAYRRRPSPD 175
+DRVISVEYAL+DD E+ + Y RRG Y GR SPYGR R R SPD
Sbjct: 479 MDRVISVEYALRDDDEKRNGYSPERRGRDRSPDRRDYRGRSASPYGRG-----RERGSPD 533
Query: 176 YGRGR---SPAYDRY---NGPVYDQRRSPDHGRH----RSPVPVYDRRRSPDYGRNRSPN 225
YGRGR SP Y R P Y + SP G SP YDR R R SP
Sbjct: 534 YGRGRERGSPDYGRGGDRGSPDYHRGASPQGGNKGDERGSPPNNYDRER-----REASPG 588
Query: 226 FGRYRSRSPVRRSR 239
+ R RSRSP R R
Sbjct: 589 YDRPRSRSPARYER 602
>gi|224063963|ref|XP_002301323.1| predicted protein [Populus trichocarpa]
gi|222843049|gb|EEE80596.1| predicted protein [Populus trichocarpa]
Length = 264
Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 113/196 (57%), Positives = 134/196 (68%), Gaps = 13/196 (6%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSK-SMANQRPTK 66
+GFAFVY ED+RDA DAIR LD FG RRL VEW + ER GS+ S AN P+K
Sbjct: 35 SGFAFVYMEDERDAEDAIRRLDQTEFGRKGRRLRVEWTKQERDSKPAGSRRSSANMTPSK 94
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
TLFVINFDPI TR RD++RHF+PYG +L RIRRNFAFVQ+E QE+ATKALE+T+ SKL+
Sbjct: 95 TLFVINFDPIHTRTRDLERHFDPYGKILSTRIRRNFAFVQYELQEDATKALEATNMSKLM 154
Query: 127 DRVISVEYALKDDSERDDRYDSPRRG---GYGRHSPYGRSPSPAYRRRPSPDYGRGRSP- 182
DRVISVEYA +DD ER + Y RRG R+ RSPSP R R SPDYG G++
Sbjct: 155 DRVISVEYAARDDDERRNGYSPERRGRDRSPDRNYSRERSPSPYRRDRGSPDYGHGQNTN 214
Query: 183 --------AYDRYNGP 190
AY++ GP
Sbjct: 215 ARPQRGNHAYEKAEGP 230
>gi|296089073|emb|CBI38776.3| unnamed protein product [Vitis vinifera]
Length = 225
Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 126/247 (51%), Positives = 153/247 (61%), Gaps = 31/247 (12%)
Query: 1 MCISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGS--KS 58
M IS AGFAFVY +D+RDA DAIR LD FG R+L VEW + ERG R G KS
Sbjct: 1 MLISQPVAGFAFVYMDDERDAEDAIRRLDRTVFGRKGRQLRVEWTKQERGIRRPGGSRKS 60
Query: 59 MANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALE 118
AN +P+KTLFVINFDPI TR RD++RHF+ YG +L++RIRRNFAF+QFE+QE+ATKAL+
Sbjct: 61 SANMKPSKTLFVINFDPIHTRTRDLERHFDLYGKILNIRIRRNFAFIQFESQEDATKALD 120
Query: 119 STDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYG-----RHSPYGRSPSPAYRRRPS 173
+T+ SK +DRVISVEYA +DD + SP R G R GRSPSP +R R S
Sbjct: 121 ATNMSKFMDRVISVEYAARDDDDDRRNGYSPERRGRDMSPDRRSHDRGRSPSPYHRDRAS 180
Query: 174 PDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRSRS 233
PDYG G + + R P R SP+Y R+ SP RY SRS
Sbjct: 181 PDYGHGANA----------NSRSEP--------------RGSPNYDRDESPVNERYHSRS 216
Query: 234 PVRRSRT 240
P R R+
Sbjct: 217 PPPRERS 223
>gi|1667582|gb|AAB18813.1| splicing factor At-SRp40 [Arabidopsis thaliana]
Length = 350
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 124/241 (51%), Positives = 154/241 (63%), Gaps = 14/241 (5%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN----QR 63
AGFAFVY ED+RDA DAIR LD FG R L VEW + ERG + R
Sbjct: 35 AGFAFVYMEDERDAEDAIRALDRFEFGRRGRTLRVEWTKSERGGDKRSGGGSRRSSSSMR 94
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRS 123
P+KTLFVINFD TR RD+++HFEPYG +++VRIRRNFAF+Q+E QE+AT+AL++++ S
Sbjct: 95 PSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNS 154
Query: 124 KLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPA 183
KL+D+VISVEYA+KDD R + + SP R RSP+P R R SPDYGRG SP
Sbjct: 155 KLMDKVISVEYAVKDDDARGNGH-SPERRRDRSPERRRRSPTPYKRERGSPDYGRGASPV 213
Query: 184 YDRYNGPVYDQRRSPDHGRHRSPVPVYDRRR-SPDYGRNRSPNFG---RYRSRSPVRRSR 239
+R SPD+GR RSP P RR SP+YGR+R N R R SP + SR
Sbjct: 214 -----AAYRKERTSPDYGRRRSPSPYKKSRRGSPEYGRDRRGNDSPRRRERVASPTKYSR 268
Query: 240 T 240
+
Sbjct: 269 S 269
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
K +F NF+ RE D++R F YG V V ++ FAFV E + +A A+ + DR +
Sbjct: 1 MKPVFCGNFE-YDAREGDLERLFRKYGRVERVDMKAGFAFVYMEDERDAEDAIRALDRFE 59
Query: 125 LV--DRVISVEYA 135
R + VE+
Sbjct: 60 FGRRGRTLRVEWT 72
>gi|162457883|ref|NP_001105264.1| arginine/serine-rich splicing factor 2 variant 2 [Zea mays]
gi|47680309|gb|AAT37138.1| arginine/serine-rich splicing factor 2 variant 2 [Zea mays]
gi|47680375|gb|AAT37129.1| arginine/serine-rich splicing factor 2 variant 2 [Zea mays]
Length = 193
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/164 (65%), Positives = 124/164 (75%), Gaps = 9/164 (5%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
+G+AFVYFED+RD DAIR LD PFG RRRLSVEW+R DG+K AN +PT+T
Sbjct: 35 SGYAFVYFEDERDGNDAIRALDGYPFGPGRRRLSVEWSR-------DGNKPEANTKPTRT 87
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFVINFDP+ TR DI+RHF P+GN+ VRIR+NFAFVQFET EEA KALE+T + L+D
Sbjct: 88 LFVINFDPMNTRVSDIERHFTPFGNISSVRIRKNFAFVQFETMEEARKALEATHATTLLD 147
Query: 128 RVISVEYALKDDSERDDRYDSPRR-GGYGRHSPYGRSPSPAYRR 170
RVISVEYA +DDSE DRY SPRR GGYG + RSP PA RR
Sbjct: 148 RVISVEYAFRDDSEVSDRYGSPRRGGGYGSLAYRSRSP-PAKRR 190
>gi|222622077|gb|EEE56209.1| hypothetical protein OsJ_05182 [Oryza sativa Japonica Group]
Length = 290
Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 134/249 (53%), Positives = 155/249 (62%), Gaps = 22/249 (8%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER--GRHRDGSKSMANQRPT 65
+GFAFVY ED+RDA +AI LD I FG RRL VEW + +R GR + +S N RPT
Sbjct: 46 SGFAFVYMEDERDADEAIHRLDRIEFGRKGRRLRVEWTKEDRSGGRRGNSKRSPNNTRPT 105
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
KTLFVINFDPI TR RD++RHF+ YG + +VRIRRNFAFVQ+E QE+ATKALE T+ S L
Sbjct: 106 KTLFVINFDPINTRTRDLERHFDQYGKISNVRIRRNFAFVQYELQEDATKALEGTNGSTL 165
Query: 126 VDRVISVEYALKDDSERDDRYDSPRRG---GYGRHSPYGRSPSP--AYRRRPSPDYGRGR 180
+DRVISVEYAL+DD E+ + Y RRG R GRS SP R R SPDYGRGR
Sbjct: 166 MDRVISVEYALRDDDEKRNGYSPERRGRDRSPDRRDYRGRSASPYGRGRERGSPDYGRGR 225
Query: 181 ---SPAYDR---YNGPVYDQRRSPDHGRH----RSPVPVYDRRRSPDYGRNRSPNFGRYR 230
SP Y R P Y + SP G SP YDR R R SP + R R
Sbjct: 226 ERGSPDYGRGGDRGSPDYHRGASPQGGNKGDERGSPPNNYDRER-----REASPGYDRPR 280
Query: 231 SRSPVRRSR 239
SRSP R R
Sbjct: 281 SRSPARYER 289
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL-- 125
+F N D R+ +I+R F YG V V ++ FAFV E + +A +A+ DR +
Sbjct: 15 VFCGNLD-YDARQSEIERLFSKYGRVERVDMKSGFAFVYMEDERDADEAIHRLDRIEFGR 73
Query: 126 VDRVISVEYALKDDS 140
R + VE+ +D S
Sbjct: 74 KGRRLRVEWTKEDRS 88
>gi|115443899|ref|NP_001045729.1| Os02g0122800 [Oryza sativa Japonica Group]
gi|41053015|dbj|BAD07946.1| putative arginine/serine-rich splicing factor RSp41 [Oryza sativa
Japonica Group]
gi|113535260|dbj|BAF07643.1| Os02g0122800 [Oryza sativa Japonica Group]
gi|215768223|dbj|BAH00452.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 279
Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 134/249 (53%), Positives = 155/249 (62%), Gaps = 22/249 (8%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER--GRHRDGSKSMANQRPT 65
+GFAFVY ED+RDA +AI LD I FG RRL VEW + +R GR + +S N RPT
Sbjct: 35 SGFAFVYMEDERDADEAIHRLDRIEFGRKGRRLRVEWTKEDRSGGRRGNSKRSPNNTRPT 94
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
KTLFVINFDPI TR RD++RHF+ YG + +VRIRRNFAFVQ+E QE+ATKALE T+ S L
Sbjct: 95 KTLFVINFDPINTRTRDLERHFDQYGKISNVRIRRNFAFVQYELQEDATKALEGTNGSTL 154
Query: 126 VDRVISVEYALKDDSERDDRYDSPRRG---GYGRHSPYGRSPSP--AYRRRPSPDYGRGR 180
+DRVISVEYAL+DD E+ + Y RRG R GRS SP R R SPDYGRGR
Sbjct: 155 MDRVISVEYALRDDDEKRNGYSPERRGRDRSPDRRDYRGRSASPYGRGRERGSPDYGRGR 214
Query: 181 ---SPAYDR---YNGPVYDQRRSPDHGRH----RSPVPVYDRRRSPDYGRNRSPNFGRYR 230
SP Y R P Y + SP G SP YDR R R SP + R R
Sbjct: 215 ERGSPDYGRGGDRGSPDYHRGASPQGGNKGDERGSPPNNYDRER-----REASPGYDRPR 269
Query: 231 SRSPVRRSR 239
SRSP R R
Sbjct: 270 SRSPARYER 278
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL-- 125
+F N D R+ +I+R F YG V V ++ FAFV E + +A +A+ DR +
Sbjct: 4 VFCGNLD-YDARQSEIERLFSKYGRVERVDMKSGFAFVYMEDERDADEAIHRLDRIEFGR 62
Query: 126 VDRVISVEYALKDDS 140
R + VE+ +D S
Sbjct: 63 KGRRLRVEWTKEDRS 77
>gi|15235112|ref|NP_194280.1| arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana]
gi|334186916|ref|NP_001190837.1| arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana]
gi|4033468|sp|P92965.2|RSP40_ARATH RecName: Full=Arginine/serine-rich-splicing factor RSP40
gi|2582641|emb|CAA67800.1| splicing factor [Arabidopsis thaliana]
gi|2980800|emb|CAA18176.1| splicing factor At-SRp40 [Arabidopsis thaliana]
gi|332659667|gb|AEE85067.1| arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana]
gi|332659670|gb|AEE85070.1| arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana]
Length = 350
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 126/241 (52%), Positives = 155/241 (64%), Gaps = 14/241 (5%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN----QR 63
AGFAFVY ED+RDA DAIR LD FG RRL VEW + ERG + R
Sbjct: 35 AGFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMR 94
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRS 123
P+KTLFVINFD TR RD+++HFEPYG +++VRIRRNFAF+Q+E QE+AT+AL++++ S
Sbjct: 95 PSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNS 154
Query: 124 KLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPA 183
KL+D+VISVEYA+KDD R + + SP R RSPSP R R SPDYGRG SP
Sbjct: 155 KLMDKVISVEYAVKDDDARGNGH-SPERRRDRSPERRRRSPSPYKRERGSPDYGRGASPV 213
Query: 184 YDRYNGPVYDQRRSPDHGRHRSPVPVYDRRR-SPDYGRNRSPNFG---RYRSRSPVRRSR 239
+R SPD+GR RSP P RR SP+YGR+R N R R SP + SR
Sbjct: 214 -----AAYRKERTSPDYGRRRSPSPYKKSRRGSPEYGRDRRGNDSPRRRERVASPTKYSR 268
Query: 240 T 240
+
Sbjct: 269 S 269
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDR 122
K +F NF+ RE D++R F YG V V ++ FAFV E + +A A+ + DR
Sbjct: 1 MKPVFCGNFE-YDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDR 57
>gi|7269400|emb|CAB81360.1| splicing factor At-SRp40 [Arabidopsis thaliana]
Length = 349
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 126/241 (52%), Positives = 155/241 (64%), Gaps = 14/241 (5%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN----QR 63
AGFAFVY ED+RDA DAIR LD FG RRL VEW +GERG + R
Sbjct: 34 AGFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKGERGGDKRSGGGSRRSSSSMR 93
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRS 123
P+KTLFVINFD TR RD+++HFEPYG +++VRIRRNFAF+Q+E QE+AT+AL++++
Sbjct: 94 PSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNR 153
Query: 124 KLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPA 183
KL+D+VISVEYA+KDD R + + SP R RSPSP R R SPDYGRG SP
Sbjct: 154 KLMDKVISVEYAVKDDDARGNGH-SPERRRDRSPERRRRSPSPYKRERGSPDYGRGASPV 212
Query: 184 YDRYNGPVYDQRRSPDHGRHRSPVPVYDRRR-SPDYGRNRSPNFG---RYRSRSPVRRSR 239
+R SPD+GR RSP P RR SP+YGR+R N R R SP + SR
Sbjct: 213 -----AAYRKERTSPDYGRRRSPSPYKKSRRGSPEYGRDRRGNDSPRRRERVASPTKYSR 267
Query: 240 T 240
+
Sbjct: 268 S 268
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDR 122
K +F NF+ RE D++R F YG V V ++ FAFV E + +A A+ + DR
Sbjct: 1 KPVFCGNFE-YDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDR 56
>gi|113205286|gb|ABI34327.1| Arginine/serine-rich splicing factor RSP41, putative [Solanum
demissum]
Length = 373
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 124/229 (54%), Positives = 159/229 (69%), Gaps = 11/229 (4%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG--RHRDGSKSMANQRPT 65
+GFAFVY +D+RDA DAIRGLD I FG RRL +EW++ ER R KS ++ +P+
Sbjct: 56 SGFAFVYMDDERDAEDAIRGLDRIEFGRKGRRLRIEWSKEERNGRRPETSRKSSSSVKPS 115
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
KTLFVINFDP TR R+I+RHF+PYG +L++RIRRNFAFVQ+ETQE+AT+AL++T+ SKL
Sbjct: 116 KTLFVINFDPYSTRSRNIERHFDPYGKILNIRIRRNFAFVQYETQEDATRALDATNMSKL 175
Query: 126 VDRVISVEYALKDDSERDDRYDSPRRG---GYGRHSPYGRSPSPAYRRRPSPDYGRGRSP 182
+D+VI+VEYA KDD +R + + SP R G R GRS SP R R SPDYGRGR+
Sbjct: 176 MDQVITVEYANKDDDDRRNGF-SPDRNHDRGLKRGYDRGRSRSPYGRERGSPDYGRGRA- 233
Query: 183 AYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRS 231
R P+ R SPD+GR S P + R R +YG RSPN + R+
Sbjct: 234 ---RSPSPIRQGRSSPDYGRRPSSNPNH-RERDSEYGSGRSPNIRKERN 278
>gi|449463729|ref|XP_004149584.1| PREDICTED: arginine/serine-rich-splicing factor RSP40-like [Cucumis
sativus]
gi|449528505|ref|XP_004171244.1| PREDICTED: arginine/serine-rich-splicing factor RSP40-like [Cucumis
sativus]
Length = 367
Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 127/236 (53%), Positives = 148/236 (62%), Gaps = 21/236 (8%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSM-------- 59
+GFAF+Y ED+R+A DAI LD FG RRL VEW + ERG R
Sbjct: 35 SGFAFIYMEDEREAEDAIHALDRREFGRKGRRLRVEWTKQERGIRRPSGGGGGSGGGSRR 94
Query: 60 --ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKAL 117
N RP+KTLFVINFDP TR RD++RHF+PYG +L+VRIRRNFAFVQ+E QE+AT+AL
Sbjct: 95 SSTNTRPSKTLFVINFDPYHTRIRDLERHFDPYGKILNVRIRRNFAFVQYELQEDATRAL 154
Query: 118 ESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYG 177
E T+ SKL+DRVISVEYA++DD E+ + Y SP R RSPSP R R SPDYG
Sbjct: 155 EVTNMSKLMDRVISVEYAVRDDDEKRNGY-SPDRNRDRSPDRKRRSPSPYRRERGSPDYG 213
Query: 178 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRR---SPDYGRNRSPNFGRYR 230
G S P QR SPD+G RSP P Y R R SPDY R RSP YR
Sbjct: 214 NGIS------RSPYRRQRASPDYGSRRSPSP-YQRERERGSPDYSRGRSPKHSPYR 262
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
K +F NF+ R+ D++R F YG V V ++ FAF+ E + EA A+ + DR +
Sbjct: 1 MKPIFCGNFE-YDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIHALDRRE 59
Query: 125 L--VDRVISVEYALKD 138
R + VE+ ++
Sbjct: 60 FGRKGRRLRVEWTKQE 75
>gi|224120150|ref|XP_002318257.1| predicted protein [Populus trichocarpa]
gi|222858930|gb|EEE96477.1| predicted protein [Populus trichocarpa]
Length = 329
Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 128/238 (53%), Positives = 150/238 (63%), Gaps = 21/238 (8%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDG--SKSMANQRPT 65
AGFAF+Y ED+RDA DAIRGLD + FG RRL VEW + ERG + G S+ AN RP+
Sbjct: 35 AGFAFIYMEDERDAEDAIRGLDRVEFGRKGRRLHVEWTKQERGARQPGGSSRKSANTRPS 94
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
KTLFVINFDP TR +D++RHFEPYG ++ VRIRRNFAFVQ+E QE+ATKAL++T+ SKL
Sbjct: 95 KTLFVINFDPHHTRTKDLERHFEPYGRIVSVRIRRNFAFVQYEAQEDATKALDATNMSKL 154
Query: 126 VDRVISVEYALKDDSERDDRYDSPRRGGYGRHSP---YGRSPSPAYRRRPSPDYGRGRSP 182
+ RVISVEYA +DD ER D + R RSPSP R R S DYG G S
Sbjct: 155 LYRVISVEYAARDDGERKDGHSPDRSRDRSPDRRGHDRRRSPSPYRRERGSTDYGHGPS- 213
Query: 183 AYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRSRSPVRRSRT 240
P +R SPD G RSP P R SPDYGR +RSP RR R
Sbjct: 214 -------PYRKERVSPDSGCRRSPSPYRRDRASPDYGRG--------STRSPSRRERA 256
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
+++F NF+ R+ +++R F+ YG V V ++ FAF+ E + +A A+ DR +
Sbjct: 1 MRSIFCGNFE-YDARQTELERLFKRYGRVERVDMKAGFAFIYMEDERDAEDAIRGLDRVE 59
Query: 125 L--VDRVISVEYALKD 138
R + VE+ ++
Sbjct: 60 FGRKGRRLHVEWTKQE 75
>gi|145334133|ref|NP_001078447.1| arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana]
gi|222423494|dbj|BAH19717.1| AT4G25500 [Arabidopsis thaliana]
gi|332659669|gb|AEE85069.1| arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana]
Length = 317
Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 125/240 (52%), Positives = 154/240 (64%), Gaps = 14/240 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN----QRP 64
GFAFVY ED+RDA DAIR LD FG RRL VEW + ERG + RP
Sbjct: 3 GFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRP 62
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
+KTLFVINFD TR RD+++HFEPYG +++VRIRRNFAF+Q+E QE+AT+AL++++ SK
Sbjct: 63 SKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSK 122
Query: 125 LVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAY 184
L+D+VISVEYA+KDD R + + SP R RSPSP R R SPDYGRG SP
Sbjct: 123 LMDKVISVEYAVKDDDARGNGH-SPERRRDRSPERRRRSPSPYKRERGSPDYGRGASPV- 180
Query: 185 DRYNGPVYDQRRSPDHGRHRSPVPVYDRRR-SPDYGRNRSPNFG---RYRSRSPVRRSRT 240
+R SPD+GR RSP P RR SP+YGR+R N R R SP + SR+
Sbjct: 181 ----AAYRKERTSPDYGRRRSPSPYKKSRRGSPEYGRDRRGNDSPRRRERVASPTKYSRS 236
>gi|226494041|ref|NP_001147698.1| arginine/serine-rich splicing factor RSP41 [Zea mays]
gi|195613160|gb|ACG28410.1| arginine/serine-rich splicing factor RSP41 [Zea mays]
gi|195655913|gb|ACG47424.1| arginine/serine-rich splicing factor RSP41 [Zea mays]
Length = 279
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 130/251 (51%), Positives = 155/251 (61%), Gaps = 26/251 (10%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER--GRHRDGSKSMANQRPT 65
GFAFVY ED+RDA DAI LD I FG RR+ VEW + +R GR +S N +PT
Sbjct: 35 TGFAFVYMEDERDAEDAISRLDGIDFGRKGRRIRVEWTKEDRTVGRKSSSRRSPTNTKPT 94
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
KTLFVINFDPI TR RD++RHF+ YG V +VRI++NFAF+QFE QE+AT+ALE T+ S
Sbjct: 95 KTLFVINFDPINTRIRDLERHFDKYGRVANVRIKKNFAFIQFEVQEDATRALEGTNGSHF 154
Query: 126 VDRVISVEYALKDDSERDDRYD--SPRRGGYGRHSPYGRSPSP--AYRRRPSPDYGRGR- 180
+DRVISVEYAL+DD E+ +R + SP R G R RSPSP R R SPDYGR +
Sbjct: 155 MDRVISVEYALRDDDEKGERGNGYSPDRRGRERSPGRRRSPSPYGRGRERGSPDYGRSKE 214
Query: 181 --SPAYDRYNGPVYDQRRSPDHGRHRSPVP------VYDRRRSPDYGRNR----SPNFGR 228
SP Y R RSPD+GR SP RSPDY R R P + R
Sbjct: 215 RGSPDYGRGG-------RSPDNGRGVSPAGGGRGDHARGGGRSPDYDRQRREASPPGYDR 267
Query: 229 YRSRSPVRRSR 239
SRSP R +R
Sbjct: 268 SPSRSPGREAR 278
>gi|357114378|ref|XP_003558977.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like
[Brachypodium distachyon]
Length = 286
Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 123/258 (47%), Positives = 157/258 (60%), Gaps = 52/258 (20%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
+G+AF+YFED+RDA DAI+ L N FGY+RRRLSVEW+R ++ + + +PT+T
Sbjct: 35 SGYAFIYFEDERDAEDAIKRLANADFGYNRRRLSVEWSRQVEPVPKNRDRPTGDAKPTRT 94
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFVINFDP+RT+ +DI+RHFEPYG + ++RIR+NFAFV++ETQEEA+ A++ TD+S ++D
Sbjct: 95 LFVINFDPLRTKIQDIERHFEPYGKISNIRIRKNFAFVRYETQEEASVAVKHTDKSSILD 154
Query: 128 RVISVEYALKDDSER-----------DDRYDSPRRG------------------------ 152
RV++VEYA +DD DDRY SPRRG
Sbjct: 155 RVLTVEYAFRDDDNERDDRYSSPKRGDDRYSSPRRGDDRYVSTRRGDDRYVSPRRGDNRY 214
Query: 153 --------GYGRHSPYGRSPSPAYRRRPSPDYG-RGRSPAYDRYNGPVYDQRRSPDHGRH 203
G R SPY RSPSP YRR SPDY R R+ YDR R +GR
Sbjct: 215 GSPKRAERGRARGSPYMRSPSPRYRRDYSPDYDRRPRNAGYDR-------PREGAPYGRS 267
Query: 204 RSPVPV-YDRRRSPDYGR 220
RSPV YDR RSP YGR
Sbjct: 268 RSPVYARYDRGRSPGYGR 285
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALE 118
+ +F NFD TR+ D++R F +G + + ++ +AF+ FE + +A A++
Sbjct: 1 MRPVFCGNFD-YDTRQADLERLFSKHGRIARIDMKSGYAFIYFEDERDAEDAIK 53
>gi|194696906|gb|ACF82537.1| unknown [Zea mays]
gi|413935351|gb|AFW69902.1| arginine/serine-rich splicing factor RSP41 [Zea mays]
Length = 279
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 130/251 (51%), Positives = 155/251 (61%), Gaps = 26/251 (10%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER--GRHRDGSKSMANQRPT 65
GFAFVY ED+RDA DAI LD I FG RR+ VEW + +R GR +S N +PT
Sbjct: 35 TGFAFVYMEDERDAEDAISRLDGIDFGRKGRRIRVEWTKEDRTVGRKSSSRRSPTNTKPT 94
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
KTLFVINFDPI TR RD++RHF+ YG V +VRI++NFAF+QFE QE+AT+ALE T+ S
Sbjct: 95 KTLFVINFDPINTRIRDLERHFDKYGRVANVRIKKNFAFIQFEIQEDATRALEGTNGSHF 154
Query: 126 VDRVISVEYALKDDSERDDRYD--SPRRGGYGRHSPYGRSPSP--AYRRRPSPDYGRGR- 180
+DRVISVEYAL+DD E+ +R + SP R G R RSPSP R R SPDYGR +
Sbjct: 155 MDRVISVEYALRDDDEKGERGNGYSPDRRGRERSPGRRRSPSPYGRGRERGSPDYGRSKE 214
Query: 181 --SPAYDRYNGPVYDQRRSPDHGRHRSPVP------VYDRRRSPDYGRNR----SPNFGR 228
SP Y R RSPD+GR SP RSPDY R R P + R
Sbjct: 215 RGSPDYGRGG-------RSPDNGRGVSPAGGGRGDHARGGGRSPDYDRQRREASPPGYDR 267
Query: 229 YRSRSPVRRSR 239
SRSP R +R
Sbjct: 268 SPSRSPGREAR 278
>gi|222424234|dbj|BAH20075.1| AT4G25500 [Arabidopsis thaliana]
Length = 317
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 124/240 (51%), Positives = 154/240 (64%), Gaps = 14/240 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN----QRP 64
GFAFVY ED+RDA DAIR LD FG RRL VEW + ERG + RP
Sbjct: 3 GFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRP 62
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
+KTLFVINFD TR RD+++HFEPYG +++VRIRRNFAF+Q++ QE+AT+AL++++ SK
Sbjct: 63 SKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYKAQEDATRALDASNNSK 122
Query: 125 LVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAY 184
L+D+VISVEYA+KDD R + + SP R RSPSP R R SPDYGRG SP
Sbjct: 123 LMDKVISVEYAVKDDDARGNGH-SPERRRDRSPERRRRSPSPYKRERGSPDYGRGASPV- 180
Query: 185 DRYNGPVYDQRRSPDHGRHRSPVPVYDRRR-SPDYGRNRSPNFG---RYRSRSPVRRSRT 240
+R SPD+GR RSP P RR SP+YGR+R N R R SP + SR+
Sbjct: 181 ----AAYRKERTSPDYGRRRSPSPYKKSRRGSPEYGRDRRGNDSPRRRERVASPTKYSRS 236
>gi|326509639|dbj|BAJ87035.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 270
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 129/254 (50%), Positives = 160/254 (62%), Gaps = 50/254 (19%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG--RHRDGSKSMANQRPT 65
+G+AFVYF+D+RDA DAIR L N FG+ RRRLSVEW+R E ++RD + A+ +PT
Sbjct: 35 SGYAFVYFQDERDAEDAIRRLSNAEFGHSRRRLSVEWSRQEEPVPKNRD-RPTGADAKPT 93
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
+TLFVINFDP+RT+ DI+RHF+PYG + ++RIR+NFAFVQ+E QE+A+ A+ TD+S +
Sbjct: 94 RTLFVINFDPVRTKVVDIERHFQPYGKIANIRIRKNFAFVQYEMQEDASVAVNKTDKSTI 153
Query: 126 VDRVISVEYALKDDSE------------RD---------DRYDSPRRGG--YGRHS---- 158
+DRV++VEYA +DD RD DRY SPRRGG YG
Sbjct: 154 LDRVVTVEYAFRDDDNERDDRHGSPRQGRDRYGSPRRGGDRYGSPRRGGDRYGSPKRANQ 213
Query: 159 ---PYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRS 215
PY RSPSP YRR SPDY R P YDR G Y GR RS PVYDR
Sbjct: 214 GRRPYERSPSPRYRRDYSPDY--DRRPCYDRQYGAPY--------GRSRS--PVYDR--- 258
Query: 216 PDYGRNRSPNFGRY 229
Y R RSP +GRY
Sbjct: 259 --YERGRSPGYGRY 270
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
+ +F NFD TR+ D++R F YG + + I+ +AFV F+ + +A A+ ++
Sbjct: 1 MRPVFCGNFD-YETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAE 59
Query: 125 LVD--RVISVEYALKDD 139
R +SVE++ +++
Sbjct: 60 FGHSRRRLSVEWSRQEE 76
>gi|300681335|emb|CAZ96065.1| arginine/serine-rich splicing factor [Saccharum hybrid cultivar
R570]
Length = 324
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 136/260 (52%), Positives = 161/260 (61%), Gaps = 28/260 (10%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGS--KSMANQRPT 65
GFAFVY ED+RDA DAI LD I FG RR+ VEW + +R R GS +S N RPT
Sbjct: 64 GGFAFVYMEDERDAEDAIHRLDGIDFGRKGRRIRVEWTKEDRTVGRRGSSRRSPTNARPT 123
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
KTLFVINFDPI TR RD++RHF+ YG V +VRI++NFAFVQFE QE+AT+ALE T+ S
Sbjct: 124 KTLFVINFDPINTRIRDLERHFDKYGRVANVRIKKNFAFVQFEVQEDATRALEGTNGSHF 183
Query: 126 VDRVISVEYALKDDSERDDRYD--SPRRGGYGRHSPYGRSPSP--AYRRRPSPDYGRGR- 180
+DRVISVEYAL+DD E+ +R + SP R G R RSPSP R R SPDYGR +
Sbjct: 184 MDRVISVEYALRDDDEKGERGNGYSPDRRGRERSPGRRRSPSPYGRGRERGSPDYGRSKE 243
Query: 181 --SPAYDRYNGPVYDQR--RSPDHGRHRSPVPV----YDR-RRSPDYGRNR--------- 222
SP Y R + R RSPD+GR SP+ +DR RSPDY R
Sbjct: 244 RGSPDYGRGGRSPDNGRGGRSPDNGRGVSPINGSRGDHDRGGRSPDYDREHREASPRRER 303
Query: 223 ---SPNFGRYRSRSPVRRSR 239
SP + R SRSP R R
Sbjct: 304 REASPGYDRSPSRSPGRDER 323
>gi|297803572|ref|XP_002869670.1| hypothetical protein ARALYDRAFT_492278 [Arabidopsis lyrata subsp.
lyrata]
gi|297315506|gb|EFH45929.1| hypothetical protein ARALYDRAFT_492278 [Arabidopsis lyrata subsp.
lyrata]
Length = 348
Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 124/224 (55%), Positives = 149/224 (66%), Gaps = 13/224 (5%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER----GRHRDGSKSMANQR 63
AGFAFVY ED+RDA DAIR LD I FG RRL VEW + ER +S + R
Sbjct: 35 AGFAFVYMEDERDAEDAIRALDRIEFGRKGRRLRVEWTKSEREGDRRSGGGSRRSSSGMR 94
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRS 123
P+KTLFVINFD TR RD++RHFEPYG +L+VRIRRNFAF+Q+E QE+AT+AL++T+ S
Sbjct: 95 PSKTLFVINFDADNTRTRDLERHFEPYGKILNVRIRRNFAFIQYEAQEDATRALDATNNS 154
Query: 124 KLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPA 183
KL+D+VISVEYA+KDD R + + SP R RSPSP R R SPDYGRG SP
Sbjct: 155 KLMDKVISVEYAVKDDDARGNGH-SPERRRDRSPERRRRSPSPYKRERGSPDYGRGASPV 213
Query: 184 YDRYNGPVYDQRRSPDHGRHRSPVPVYDRRR--SPDYGRNRSPN 225
R SPD+GR RSP P Y + R SP+YGR+R N
Sbjct: 214 -----AAYRKDRTSPDYGRRRSPSP-YKKSRCGSPEYGRDRRGN 251
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDR 122
K +F NF+ RE D++R F YG V V ++ FAFV E + +A A+ + DR
Sbjct: 1 MKPVFCGNFE-YDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDR 57
>gi|225453750|ref|XP_002273751.1| PREDICTED: arginine/serine-rich-splicing factor RSP40-like [Vitis
vinifera]
Length = 252
Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 122/240 (50%), Positives = 150/240 (62%), Gaps = 31/240 (12%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGS--KSMANQRPT 65
+GFAFVY +D+RDA DAIR LD FG R+L VEW + ERG R G KS AN +P+
Sbjct: 35 SGFAFVYMDDERDAEDAIRRLDRTVFGRKGRQLRVEWTKQERGIRRPGGSRKSSANMKPS 94
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
KTLFVINFDPI TR RD++RHF+ YG +L++RIRRNFAF+QFE+QE+ATKAL++T+ SK
Sbjct: 95 KTLFVINFDPIHTRTRDLERHFDLYGKILNIRIRRNFAFIQFESQEDATKALDATNMSKF 154
Query: 126 VDRVISVEYALKDDSERDDRYDSPRRGGYG-----RHSPYGRSPSPAYRRRPSPDYGRGR 180
+DRVISVEYA +DD + SP R G R GRSPSP +R R SPDYG G
Sbjct: 155 MDRVISVEYAARDDDDDRRNGYSPERRGRDMSPDRRSHDRGRSPSPYHRDRASPDYGHGA 214
Query: 181 SPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRSRSPVRRSRT 240
+ + R P R SP+Y R+ SP RY SRSP R R+
Sbjct: 215 NA----------NSRSEP--------------RGSPNYDRDESPVNERYHSRSPPPRERS 250
>gi|357444075|ref|XP_003592315.1| Arginine/serine-rich-splicing factor RSP40 [Medicago truncatula]
gi|355481363|gb|AES62566.1| Arginine/serine-rich-splicing factor RSP40 [Medicago truncatula]
Length = 430
Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 129/248 (52%), Positives = 154/248 (62%), Gaps = 43/248 (17%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSK---SMANQRP 64
AGFAF+Y ED+RDA AIR LD I FG RRL VEW + ERG R + S AN RP
Sbjct: 77 AGFAFIYMEDERDAEAAIRALDRIEFGRKGRRLRVEWTKQERGVRRPAERPKRSSANARP 136
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
+KTLFVINFD +TR RD++RHFEPYG ++ VRIR+NFAFVQ+E++++A KALE+T+ SK
Sbjct: 137 SKTLFVINFDTYQTRTRDLERHFEPYGKIVSVRIRKNFAFVQYESEDDACKALEATNNSK 196
Query: 125 LVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSP-------------YGRSPSPAYRRR 171
L+DRVISVE+A +DD RR G HSP RSPSP R R
Sbjct: 197 LMDRVISVEFAARDDD---------RRNG---HSPDRGRDRQRDRSRDGRRSPSPYRRER 244
Query: 172 PSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRS 231
SPDYGRG SP Y R +R SPD+GR S R RSP SP +GR R+
Sbjct: 245 GSPDYGRGPSP-YKR-------ERSSPDYGRGNS------RSRSPHRRERGSPAYGR-RN 289
Query: 232 RSPVRRSR 239
SP RR R
Sbjct: 290 PSPYRRER 297
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 58 SMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKAL 117
S A+ K +F NF+ RE +++R F YG V V ++ FAF+ E + +A A+
Sbjct: 36 SYAHPLKMKAIFCGNFE-YDCRESELERLFRRYGKVDRVDMKAGFAFIYMEDERDAEAAI 94
Query: 118 ESTDRSKL--VDRVISVEYALKD 138
+ DR + R + VE+ ++
Sbjct: 95 RALDRIEFGRKGRRLRVEWTKQE 117
>gi|300681351|emb|CAZ96098.1| arginine/serine-rich splicing factor [Saccharum hybrid cultivar
R570]
Length = 315
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 133/258 (51%), Positives = 156/258 (60%), Gaps = 33/258 (12%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGS--KSMANQRPT 65
GFAFVY ED+RDA DAI LD I FG RR+ VEW + +R R GS +S N RPT
Sbjct: 64 GGFAFVYMEDERDAEDAIHRLDGIDFGRKGRRIRVEWTKEDRTVGRRGSSRRSPTNARPT 123
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
KTLFVINFDPI TR RD++RHF+ YG V +VRI++NFAFVQFE QE+AT+ALE T+ S
Sbjct: 124 KTLFVINFDPINTRIRDLERHFDKYGRVANVRIKKNFAFVQFEVQEDATRALEGTNGSHF 183
Query: 126 VDRVISVEYALKDDSERDDRYD--SPRRGGYGRHSPYGRSPSP--AYRRRPSPDYGRGR- 180
+DRVISVEYAL+DD E+ +R + SP R G R RSPSP R R SPDYGR +
Sbjct: 184 MDRVISVEYALRDDDEKGERGNGYSPDRRGRERSPGRRRSPSPYGRGRERGSPDYGRSKE 243
Query: 181 --SPAYDRYNGPVYDQRRSPDHGRHRSPV-----PVYDRRRSPDYGRNR----------- 222
SP Y R RSPD+GR SP+ RSPDY R
Sbjct: 244 RGSPDYGRGG-------RSPDNGRGVSPINGGRGDHGRGGRSPDYDREHREASPRRERRE 296
Query: 223 -SPNFGRYRSRSPVRRSR 239
SP + R SRSP R R
Sbjct: 297 ASPGYDRSPSRSPGRDER 314
>gi|302809591|ref|XP_002986488.1| hypothetical protein SELMODRAFT_124209 [Selaginella moellendorffii]
gi|300145671|gb|EFJ12345.1| hypothetical protein SELMODRAFT_124209 [Selaginella moellendorffii]
Length = 214
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/176 (60%), Positives = 127/176 (72%), Gaps = 17/176 (9%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR-GERG--RHRDGSKSMANQRP 64
GFAFVY ED+RDA DAI+ LDN+ FG RR L VEWA+ G+ R D +S+ QRP
Sbjct: 35 TGFAFVYMEDERDAEDAIQDLDNVEFGRQRRPLRVEWAKQGDSAIKRREDARRSITKQRP 94
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
TKTLFV+NFDPI TR RD++RHFEPYG ++ V+IR+NFAFVQ+E+QEEATKALEST SK
Sbjct: 95 TKTLFVVNFDPINTRTRDLERHFEPYGKLVRVQIRKNFAFVQYESQEEATKALESTHLSK 154
Query: 125 LVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGR 180
+VDRVISVEYA +++ D P RG RSPSP +R R SPDYG GR
Sbjct: 155 VVDRVISVEYAARENG------DPPGRG--------RRSPSPRHRSRGSPDYGGGR 196
>gi|302762969|ref|XP_002964906.1| hypothetical protein SELMODRAFT_82477 [Selaginella moellendorffii]
gi|300167139|gb|EFJ33744.1| hypothetical protein SELMODRAFT_82477 [Selaginella moellendorffii]
Length = 214
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/176 (60%), Positives = 127/176 (72%), Gaps = 17/176 (9%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR-GERG--RHRDGSKSMANQRP 64
GFAFVY ED+RDA DAI+ LDN+ FG RR L VEWA+ G+ R D +S+ QRP
Sbjct: 35 TGFAFVYMEDERDAEDAIQDLDNVEFGRQRRPLRVEWAKQGDSAIKRREDARRSITKQRP 94
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
TKTLFV+NFDPI TR RD++RHFEPYG ++ V+IR+NFAFVQ+E+QEEATKALEST SK
Sbjct: 95 TKTLFVVNFDPINTRTRDLERHFEPYGKLVRVQIRKNFAFVQYESQEEATKALESTHLSK 154
Query: 125 LVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGR 180
+VDRVISVEYA +++ D P RG RSPSP +R R SPDYG GR
Sbjct: 155 VVDRVISVEYAARENG------DPPGRG--------RRSPSPRHRSRGSPDYGGGR 196
>gi|388508248|gb|AFK42190.1| unknown [Medicago truncatula]
Length = 388
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 128/248 (51%), Positives = 153/248 (61%), Gaps = 43/248 (17%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSK---SMANQRP 64
AGFAF+Y ED+RDA IR LD I FG RRL VEW + ERG R + S AN RP
Sbjct: 35 AGFAFIYMEDERDAEAVIRALDRIEFGRKGRRLRVEWTKQERGVRRPAERPKRSSANARP 94
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
+KTLFVINFD +TR RD++RHFEPYG ++ VRIR+NFAFVQ+E++++A KALE+T+ SK
Sbjct: 95 SKTLFVINFDTYQTRTRDLERHFEPYGKIVSVRIRKNFAFVQYESEDDACKALEATNNSK 154
Query: 125 LVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSP-------------YGRSPSPAYRRR 171
L+DRVISVE+A +DD RR G HSP RSPSP R R
Sbjct: 155 LMDRVISVEFAARDDD---------RRNG---HSPDRGRDRQRDRSRDGRRSPSPYRRER 202
Query: 172 PSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRS 231
SPDYGRG SP Y R +R SPD+GR S R RSP SP +GR R+
Sbjct: 203 GSPDYGRGPSP-YKR-------ERSSPDYGRGNS------RSRSPHRRERGSPAYGR-RN 247
Query: 232 RSPVRRSR 239
SP RR R
Sbjct: 248 PSPYRRER 255
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
K +F NF+ RE +++R F YG V V ++ FAF+ E + +A + + DR +
Sbjct: 1 MKAIFCGNFE-YDCRESELERLFRRYGKVDRVDMKAGFAFIYMEDERDAEAVIRALDRIE 59
Query: 125 L--VDRVISVEYALKD 138
R + VE+ ++
Sbjct: 60 FGRKGRRLRVEWTKQE 75
>gi|300681317|emb|CAZ96031.1| arginine/serine-rich splicing factor [Sorghum bicolor]
Length = 324
Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 121/226 (53%), Positives = 145/226 (64%), Gaps = 34/226 (15%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGS--KSMANQRPT 65
GFAFVY ED+RDA DAI LD I FG RR+ VEW + +R R GS +S RPT
Sbjct: 64 GGFAFVYMEDERDAEDAIHRLDGIDFGRKGRRIRVEWTKEDRTAGRRGSSRRSPTQARPT 123
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
KTLFVINFDPI TR RD++RHF+ YG V +VRI++NFAFVQFE QE+AT+ALE T+ S
Sbjct: 124 KTLFVINFDPINTRIRDLERHFDKYGRVANVRIKKNFAFVQFEVQEDATRALEGTNGSHF 183
Query: 126 VDRVISVEYALKDDSERDDRYDSPRRGGYGRHSP--YGRSPSPAYRRRPSPDYGRGRSPA 183
+DRVISVEYAL+DD E+ +R + +SP GR SP RR PSP YGRGR
Sbjct: 184 MDRVISVEYALRDDDEKGERGNG--------YSPDRRGRERSPGRRRSPSP-YGRGR--- 231
Query: 184 YDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGR-NRSPNFGR 228
+R SPD+GR + R SPDYGR RSP+ GR
Sbjct: 232 ----------ERGSPDYGRSKE-------RGSPDYGRGGRSPDNGR 260
>gi|242063870|ref|XP_002453224.1| hypothetical protein SORBIDRAFT_04g001910 [Sorghum bicolor]
gi|241933055|gb|EES06200.1| hypothetical protein SORBIDRAFT_04g001910 [Sorghum bicolor]
gi|448878270|gb|AGE46098.1| arginine/serine-rich splicing factor RS34 [Sorghum bicolor]
Length = 295
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 121/226 (53%), Positives = 145/226 (64%), Gaps = 34/226 (15%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGS--KSMANQRPT 65
GFAFVY ED+RDA DAI LD I FG RR+ VEW + +R R GS +S RPT
Sbjct: 35 TGFAFVYMEDERDAEDAIHRLDGIDFGRKGRRIRVEWTKEDRTAGRRGSSRRSPTQARPT 94
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
KTLFVINFDPI TR RD++RHF+ YG V +VRI++NFAFVQFE QE+AT+ALE T+ S
Sbjct: 95 KTLFVINFDPINTRIRDLERHFDKYGRVANVRIKKNFAFVQFEVQEDATRALEGTNGSHF 154
Query: 126 VDRVISVEYALKDDSERDDRYDSPRRGGYGRHSP--YGRSPSPAYRRRPSPDYGRGRSPA 183
+DRVISVEYAL+DD E+ +R + +SP GR SP RR PSP YGRGR
Sbjct: 155 MDRVISVEYALRDDDEKGERGNG--------YSPDRRGRERSPGRRRSPSP-YGRGR--- 202
Query: 184 YDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGR-NRSPNFGR 228
+R SPD+GR + R SPDYGR RSP+ GR
Sbjct: 203 ----------ERGSPDYGRSKE-------RGSPDYGRGGRSPDNGR 231
>gi|168038912|ref|XP_001771943.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676725|gb|EDQ63204.1| predicted protein [Physcomitrella patens subsp. patens]
gi|448878393|gb|AGE46159.1| arginine/serine-rich splicing factor RS27 transcript I
[Physcomitrella patens subsp. patens]
Length = 233
Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 112/223 (50%), Positives = 140/223 (62%), Gaps = 40/223 (17%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG---RHRDGSKSMANQRP 64
GF+F+Y ED+RDA DAIR LDN+ FG RRRLSVEWA+ G R D ++ RP
Sbjct: 39 TGFSFIYMEDERDAEDAIRHLDNMEFGRQRRRLSVEWAKQGDGAIRRREDARRNNTKLRP 98
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
+KTLFV+NFDPI TR RD++RHFEPYG ++ V+IR+NF FVQ+ETQ+EATKALEST+ SK
Sbjct: 99 SKTLFVVNFDPINTRVRDLERHFEPYGKLVRVQIRKNFGFVQYETQDEATKALESTNMSK 158
Query: 125 LVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAY 184
++DRVI+VEYA ++D E P GRG SP+
Sbjct: 159 VMDRVITVEYAAREDGE-------------------------------PPSSGRGGSPS- 186
Query: 185 DRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDY-GRNRSPNF 226
RY G R SP +GR RSPV R RSP GR+RSP++
Sbjct: 187 -RYRG---SSRGSPSYGRDRSPVRGSGRNRSPPARGRSRSPDY 225
>gi|195615816|gb|ACG29738.1| arginine/serine-rich splicing factor RSP41 [Zea mays]
gi|223947499|gb|ACN27833.1| unknown [Zea mays]
gi|413926667|gb|AFW66599.1| arginine/serine-rich splicing factor RSP41 [Zea mays]
Length = 270
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/227 (51%), Positives = 146/227 (64%), Gaps = 33/227 (14%)
Query: 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGS--KSMAN 61
+ + GFAF+Y ED+RDA DAI LD I FG RR+ VEW + +R R G+ +S N
Sbjct: 14 CVQHEGFAFIYMEDERDAEDAISRLDGIDFGRKGRRIKVEWTKEDRTADRRGNSRRSPTN 73
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
+PTKTLFVINFDPI TR RD++RHF+ YG V +VRI++NFAF+QFE QE+AT+ALE +
Sbjct: 74 AKPTKTLFVINFDPINTRIRDLERHFDKYGRVANVRIKKNFAFIQFEAQEDATRALEGAN 133
Query: 122 RSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSP--YGRSPSPAYRRRPSPDYGRG 179
S +DRVISVEYAL+DD E+ +R + GY SP GR SP RR PSP YGRG
Sbjct: 134 GSHFMDRVISVEYALRDDDEKGERATN----GY---SPDRRGRERSPGARRSPSP-YGRG 185
Query: 180 RSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGR-NRSPN 225
R +R SPD+GR + R SPDYGR RSP+
Sbjct: 186 R-------------ERGSPDYGRGKE-------RGSPDYGRGGRSPD 212
>gi|356505098|ref|XP_003521329.1| PREDICTED: arginine/serine-rich-splicing factor RSP41-like [Glycine
max]
Length = 252
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 126/245 (51%), Positives = 154/245 (62%), Gaps = 41/245 (16%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGS---KSMANQRP 64
+GFAFVY ED+RDA AIR LD FG RR+ VEW + ER R G KS +N RP
Sbjct: 35 SGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGGDSRKSSSNSRP 94
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
+KTLFVINFDP+ R RD++RHF+ YG +L++RIRRNFAF+QFE+QE+AT+ALE+T+ SK
Sbjct: 95 SKTLFVINFDPVNARTRDLERHFDSYGKILNIRIRRNFAFIQFESQEDATRALEATNLSK 154
Query: 125 LVDRVISVEYALKDDSERD-------DR--YDSPRRGGYGRHSPYGRSPSPAYRRRPSPD 175
+DRVI+VEYA++DD +RD DR +DSP G YGR GRSPSP R R SPD
Sbjct: 155 FMDRVITVEYAIRDDDDRDRRNGYSPDRRGHDSPD-GRYGR----GRSPSPYRRGRGSPD 209
Query: 176 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRSRSPV 235
YG G +P+ P P R SP Y R SP GRY SRSP
Sbjct: 210 YGHGSNPSS--------------------RPEP----RGSPKYDRAESPINGRYDSRSPP 245
Query: 236 RRSRT 240
R R+
Sbjct: 246 PRDRS 250
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
K +F N D R+ D++R F YG V V ++ FAFV E + +A A+ DR++
Sbjct: 1 MKPVFCGNLD-FDARQSDVERLFRRYGKVDRVDMKSGFAFVYMEDERDAEYAIRRLDRTE 59
Query: 125 L--VDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPS 165
R I VE+ + ERD R R GG R S PS
Sbjct: 60 FGRKGRRIRVEWTKQ---ERDSR----RSGGDSRKSSSNSRPS 95
>gi|356520473|ref|XP_003528886.1| PREDICTED: arginine/serine-rich-splicing factor RSP41-like [Glycine
max]
Length = 253
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 124/239 (51%), Positives = 152/239 (63%), Gaps = 28/239 (11%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGS---KSMANQRP 64
+GFAFVY ED+RDA AIR LD FG RR+ VEW + ER R G KS +N RP
Sbjct: 35 SGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGGDSRKSSSNSRP 94
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
+KTLFVINFDP+ R RD++RHF+ YG +L++RIRRNFAF+QFE+QE+AT+ALE+T+ SK
Sbjct: 95 SKTLFVINFDPVHARTRDLERHFDSYGKILNIRIRRNFAFIQFESQEDATRALEATNLSK 154
Query: 125 LVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPD--YGRGRSP 182
+DRVI+VEYA++DD + RR GY SP R SPD YGRGRSP
Sbjct: 155 FMDRVITVEYAIRDDDD------RDRRNGY----------SPDRRGHDSPDGRYGRGRSP 198
Query: 183 AYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP-NFGRYRSRSPVRRSRT 240
+ P R SPD+G +P D R SP Y R SP N GRY SRSP R R+
Sbjct: 199 S------PYRRGRGSPDYGHGSNPSSRPDPRGSPKYERAESPINNGRYDSRSPPPRERS 251
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
K +F N D R+ D++R F YG V V ++ FAFV E + +A A+ DR++
Sbjct: 1 MKPVFCGNLD-FDARQSDVERLFRRYGKVDRVDMKSGFAFVYMEDERDAEYAIRRLDRTE 59
Query: 125 L--VDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPS 165
R I VE+ + ERD R R GG R S PS
Sbjct: 60 FGRKGRRIRVEWTKQ---ERDSR----RSGGDSRKSSSNSRPS 95
>gi|356575923|ref|XP_003556085.1| PREDICTED: arginine/serine-rich-splicing factor RSP40-like [Glycine
max]
Length = 376
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 127/240 (52%), Positives = 156/240 (65%), Gaps = 25/240 (10%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGS--KSMANQRPT 65
+GFAF+Y ED+RDA AIR LD + FG RRL VEW + ERG + S +S AN RP+
Sbjct: 40 SGFAFIYMEDERDAEAAIRALDRVEFGRKGRRLRVEWTKHERGVRKPASSRRSSANGRPS 99
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
KTLFVINFD TR RD++RHFEPYG ++ VRIRRNFAFVQ+E++++A++ALE+T+ SKL
Sbjct: 100 KTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDASRALEATNMSKL 159
Query: 126 VDRVISVEYALKDDSERDDRY--DSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPA 183
+DRVISVE+A+KDD +R + Y + R R RSPSP R R SPDYGRG SP
Sbjct: 160 LDRVISVEFAVKDDDDRRNGYSPERGRDRHRDRSRDGRRSPSPYRRERGSPDYGRGPSP- 218
Query: 184 YDRYNGPVYDQRRSPDHG----RHRSPVPVYDRRRSPDYGRNRSPNFGRYRSRSPVRRSR 239
Y R +R SPD+G R RS P R SP YGR RS SP RR R
Sbjct: 219 YQR-------ERGSPDYGRDRDRSRSRSPPRRERASPAYGR---------RSLSPHRRER 262
Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALEST 120
Q + +F NF+ R+ +++R F YG V V ++ FAF+ E + +A A+ +
Sbjct: 2 QQGKMRPIFCGNFE-YDARQSELERLFRRYGKVDRVDMKSGFAFIYMEDERDAEAAIRAL 60
Query: 121 DRSKL 125
DR +
Sbjct: 61 DRVEF 65
>gi|217071906|gb|ACJ84313.1| unknown [Medicago truncatula]
Length = 289
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 114/216 (52%), Positives = 138/216 (63%), Gaps = 36/216 (16%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSK---SMANQRP 64
AGFAF+Y ED+RDA IR LD I FG RRL VEW + ERG R + S AN RP
Sbjct: 35 AGFAFIYMEDERDAEAVIRALDRIEFGRKGRRLRVEWTKQERGVRRPAERPKRSSANARP 94
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
+KTLFVINFD +TR RD++RHFEPYG ++ VRIR+NFAFVQ+E++++A KALE+T+ SK
Sbjct: 95 SKTLFVINFDTYQTRTRDLERHFEPYGKIVSVRIRKNFAFVQYESEDDACKALEATNNSK 154
Query: 125 LVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSP-------------YGRSPSPAYRRR 171
L+DRVISVE+A +DD RR G HSP RSPSP R R
Sbjct: 155 LMDRVISVEFAARDDD---------RRNG---HSPDRGRDRQRDRSRDGRRSPSPYRRER 202
Query: 172 PSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPV 207
SPDYGRG SP Y R +R SPD+GR + V
Sbjct: 203 GSPDYGRGPSP-YKR-------ERSSPDYGRGTAVV 230
>gi|212722462|ref|NP_001132395.1| hypothetical protein [Zea mays]
gi|194694266|gb|ACF81217.1| unknown [Zea mays]
gi|413926669|gb|AFW66601.1| hypothetical protein ZEAMMB73_609363 [Zea mays]
Length = 287
Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 117/223 (52%), Positives = 144/223 (64%), Gaps = 33/223 (14%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGS--KSMANQRPT 65
GFAF+Y ED+RDA DAI LD I FG RR+ VEW + +R R G+ +S N +PT
Sbjct: 35 TGFAFIYMEDERDAEDAISRLDGIDFGRKGRRIKVEWTKEDRTADRRGNSRRSPTNAKPT 94
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
KTLFVINFDPI TR RD++RHF+ YG V +VRI++NFAF+QFE QE+AT+ALE + S
Sbjct: 95 KTLFVINFDPINTRIRDLERHFDKYGRVANVRIKKNFAFIQFEAQEDATRALEGANGSHF 154
Query: 126 VDRVISVEYALKDDSERDDRYDSPRRGGYGRHSP--YGRSPSPAYRRRPSPDYGRGRSPA 183
+DRVISVEYAL+DD E+ +R + GY SP GR SP RR PSP YGRGR
Sbjct: 155 MDRVISVEYALRDDDEKGERATN----GY---SPDRRGRERSPGARRSPSP-YGRGR--- 203
Query: 184 YDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGR-NRSPN 225
+R SPD+GR + R SPDYGR RSP+
Sbjct: 204 ----------ERGSPDYGRGKE-------RGSPDYGRGGRSPD 229
>gi|388494018|gb|AFK35075.1| unknown [Lotus japonicus]
Length = 249
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 118/235 (50%), Positives = 150/235 (63%), Gaps = 24/235 (10%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHR--DGSKSMANQRPT 65
+GFAFVY ED+RDA AIR LD FG RR+ VEW + ER R D K +N +P+
Sbjct: 35 SGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSADSRKPASNMKPS 94
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
KTLF+INFDP+ TR RD++RHF+PYG + ++RIRRNFAF+Q+E+ E+AT+ALE+T+ SK
Sbjct: 95 KTLFIINFDPVHTRTRDLERHFDPYGKISNIRIRRNFAFIQYESLEDATRALEATNLSKF 154
Query: 126 VDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYD 185
+DRVI+VEYA++DD +R D RR GR SP GR YGRGRSP+
Sbjct: 155 MDRVITVEYAIRDDDDRRDGQSPDRR---GRVSPDGR-------------YGRGRSPS-- 196
Query: 186 RYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRSRSPVRRSRT 240
P R SPD+G +P + R SP Y R SP GRY SRSP R R+
Sbjct: 197 ----PYRRGRGSPDYGHGSNPASRPEPRGSPKYERAESPQNGRYDSRSPPPRDRS 247
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
K +F N D R+ D++R F YG V V ++ FAFV E + +A A+ DR++
Sbjct: 1 MKPVFCGNLD-FDARQSDVERLFRRYGKVERVDMKSGFAFVYMEDERDAEYAIRRLDRTE 59
Query: 125 L--VDRVISVEYALKDDSERDDR 145
R I VE+ + ERD R
Sbjct: 60 FGRKGRRIRVEWTKQ---ERDSR 79
>gi|297741108|emb|CBI31839.3| unnamed protein product [Vitis vinifera]
Length = 196
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 106/189 (56%), Positives = 128/189 (67%), Gaps = 9/189 (4%)
Query: 1 MCISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG--RHRDGSKS 58
C GFAF+Y ED+RDA DAIRGLD FG RRL VEW + ERG R +S
Sbjct: 6 FCFLPFTQGFAFIYMEDERDAEDAIRGLDRTGFGRKGRRLRVEWTKQERGIRRPSGSRRS 65
Query: 59 MANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALE 118
N RP KTLFVINFDP TR RD++RHF+PYG +L++RIRRNFAF+Q+E+QE+AT+ALE
Sbjct: 66 STNLRPAKTLFVINFDPYNTRTRDLERHFDPYGKILNIRIRRNFAFIQYESQEDATRALE 125
Query: 119 STDRSKLVDRVISVEYALKDDSERDDRY--DSPRRGGYGRHSPYGRSPSPA-YRR----R 171
+T+ SKL+DRVISVEYA++DD ER + Y D RR R PS + YR R
Sbjct: 126 ATNMSKLMDRVISVEYAVRDDDERRNGYSPDGRRRDKERTSHDSARGPSRSPYRSERSDR 185
Query: 172 PSPDYGRGR 180
PDYGRGR
Sbjct: 186 AIPDYGRGR 194
>gi|297792527|ref|XP_002864148.1| hypothetical protein ARALYDRAFT_495275 [Arabidopsis lyrata subsp.
lyrata]
gi|297309983|gb|EFH40407.1| hypothetical protein ARALYDRAFT_495275 [Arabidopsis lyrata subsp.
lyrata]
Length = 357
Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 127/248 (51%), Positives = 152/248 (61%), Gaps = 28/248 (11%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPT-- 65
AGFAFVY ED+RDA DAIR LD +G RRL VEW + +RG S +
Sbjct: 35 AGFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGMRP 94
Query: 66 -KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
KTLFVINFD TR RD++RHFEPYG +++VRIRRNFAF+Q+E+QE+AT+AL++T+ SK
Sbjct: 95 SKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYESQEDATRALDATNSSK 154
Query: 125 LVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAY 184
L+D+VISVEYA+KDD R + Y SP R RSPSP R R SPDYGRG SP
Sbjct: 155 LMDKVISVEYAVKDDDSRGNGY-SPERRRDRSPDRRRRSPSPYRRERGSPDYGRGASPVA 213
Query: 185 DRYNGPVYDQRRSPDHGR-HRSPVPVYDRRRSPDYG-----------------RNRSPNF 226
+ +R SPD+GR RSP P R SPDY RNRSP
Sbjct: 214 HKR------ERTSPDYGRGRRSPSPYKRARLSPDYKRDDRRRERVASPENGAVRNRSPRK 267
Query: 227 GRYRSRSP 234
GR SRSP
Sbjct: 268 GRGESRSP 275
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
K +F NF+ RE D++R F+ YG V V ++ FAFV E + +A A+ + DR +
Sbjct: 1 MKPVFCGNFE-YDARESDLERLFKRYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFE 59
Query: 125 L--VDRVISVEYALKD 138
R + VE+ D
Sbjct: 60 YGRTGRRLRVEWTKND 75
>gi|30696140|ref|NP_200017.2| arginine/serine-rich-splicing factor RSP41 [Arabidopsis thaliana]
gi|332008780|gb|AED96163.1| arginine/serine-rich-splicing factor RSP41 [Arabidopsis thaliana]
Length = 357
Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 127/248 (51%), Positives = 151/248 (60%), Gaps = 28/248 (11%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPT-- 65
AGFAFVY ED+RDA DAIR LD +G RRL VEW + +RG S +
Sbjct: 35 AGFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRP 94
Query: 66 -KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
KTLFVINFD TR RD++RHFEPYG +++VRIRRNFAF+Q+E QE+AT+AL++T+ SK
Sbjct: 95 SKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSK 154
Query: 125 LVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAY 184
L+D+VISVEYA+KDD R + Y SP R RSPSP R R SPDYGRG SP
Sbjct: 155 LMDKVISVEYAVKDDDSRGNGY-SPERRRDRSPDRRRRSPSPYRRERGSPDYGRGASPVA 213
Query: 185 DRYNGPVYDQRRSPDHGR-HRSPVPVYDRRRSPDYG-----------------RNRSPNF 226
+ +R SPD+GR RSP P R SPDY RNRSP
Sbjct: 214 HKR------ERTSPDYGRGRRSPSPYKRARLSPDYKRDDRRRERVASPENGAVRNRSPRK 267
Query: 227 GRYRSRSP 234
GR SRSP
Sbjct: 268 GRGESRSP 275
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
K +F NF+ RE D++R F YG V V ++ FAFV E + +A A+ + DR +
Sbjct: 1 MKPVFCGNFE-YDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFE 59
Query: 125 L--VDRVISVEYALKD 138
R + VE+ D
Sbjct: 60 YGRTGRRLRVEWTKND 75
>gi|30696138|ref|NP_851174.1| arginine/serine-rich-splicing factor RSP41 [Arabidopsis thaliana]
gi|21542447|sp|P92966.2|RSP41_ARATH RecName: Full=Arginine/serine-rich-splicing factor RSP41
gi|13877817|gb|AAK43986.1|AF370171_1 putative arginine/serine-rich splicing factor RSP41 homolog
[Arabidopsis thaliana]
gi|10177739|dbj|BAB11052.1| arginine/serine-rich splicing factor RSP41 homolog [Arabidopsis
thaliana]
gi|16323490|gb|AAL15239.1| putative arginine/serine-rich splicing factor RSP41 homolog
[Arabidopsis thaliana]
gi|332008779|gb|AED96162.1| arginine/serine-rich-splicing factor RSP41 [Arabidopsis thaliana]
Length = 356
Score = 182 bits (462), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 127/248 (51%), Positives = 151/248 (60%), Gaps = 28/248 (11%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPT-- 65
AGFAFVY ED+RDA DAIR LD +G RRL VEW + +RG S +
Sbjct: 35 AGFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRP 94
Query: 66 -KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
KTLFVINFD TR RD++RHFEPYG +++VRIRRNFAF+Q+E QE+AT+AL++T+ SK
Sbjct: 95 SKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSK 154
Query: 125 LVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAY 184
L+D+VISVEYA+KDD R + Y SP R RSPSP R R SPDYGRG SP
Sbjct: 155 LMDKVISVEYAVKDDDSRGNGY-SPERRRDRSPDRRRRSPSPYRRERGSPDYGRGASPVA 213
Query: 185 DRYNGPVYDQRRSPDHGR-HRSPVPVYDRRRSPDYG-----------------RNRSPNF 226
+ +R SPD+GR RSP P R SPDY RNRSP
Sbjct: 214 HKR------ERTSPDYGRGRRSPSPYKRARLSPDYKRDDRRRERVASPENGAVRNRSPRK 267
Query: 227 GRYRSRSP 234
GR SRSP
Sbjct: 268 GRGESRSP 275
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
K +F NF+ RE D++R F YG V V ++ FAFV E + +A A+ + DR +
Sbjct: 1 MKPVFCGNFE-YDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFE 59
Query: 125 L--VDRVISVEYALKD 138
R + VE+ D
Sbjct: 60 YGRTGRRLRVEWTKND 75
>gi|42573039|ref|NP_974616.1| arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana]
gi|332659668|gb|AEE85068.1| arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana]
Length = 309
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 119/234 (50%), Positives = 148/234 (63%), Gaps = 14/234 (5%)
Query: 15 FEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN----QRPTKTLFV 70
ED+RDA DAIR LD FG RRL VEW + ERG + RP+KTLFV
Sbjct: 1 MEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFV 60
Query: 71 INFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 130
INFD TR RD+++HFEPYG +++VRIRRNFAF+Q+E QE+AT+AL++++ SKL+D+VI
Sbjct: 61 INFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVI 120
Query: 131 SVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGP 190
SVEYA+KDD R + + SP R RSPSP R R SPDYGRG SP
Sbjct: 121 SVEYAVKDDDARGNGH-SPERRRDRSPERRRRSPSPYKRERGSPDYGRGASPV-----AA 174
Query: 191 VYDQRRSPDHGRHRSPVPVYDRRR-SPDYGRNRSPNFG---RYRSRSPVRRSRT 240
+R SPD+GR RSP P RR SP+YGR+R N R R SP + SR+
Sbjct: 175 YRKERTSPDYGRRRSPSPYKKSRRGSPEYGRDRRGNDSPRRRERVASPTKYSRS 228
>gi|223973269|gb|ACN30822.1| unknown [Zea mays]
gi|413935349|gb|AFW69900.1| hypothetical protein ZEAMMB73_675088 [Zea mays]
gi|413935350|gb|AFW69901.1| hypothetical protein ZEAMMB73_675088 [Zea mays]
Length = 238
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 124/244 (50%), Positives = 149/244 (61%), Gaps = 26/244 (10%)
Query: 15 FEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER--GRHRDGSKSMANQRPTKTLFVIN 72
ED+RDA DAI LD I FG RR+ VEW + +R GR +S N +PTKTLFVIN
Sbjct: 1 MEDERDAEDAISRLDGIDFGRKGRRIRVEWTKEDRTVGRKSSSRRSPTNTKPTKTLFVIN 60
Query: 73 FDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISV 132
FDPI TR RD++RHF+ YG V +VRI++NFAF+QFE QE+AT+ALE T+ S +DRVISV
Sbjct: 61 FDPINTRIRDLERHFDKYGRVANVRIKKNFAFIQFEIQEDATRALEGTNGSHFMDRVISV 120
Query: 133 EYALKDDSERDDRYD--SPRRGGYGRHSPYGRSPSP--AYRRRPSPDYGRGR---SPAYD 185
EYAL+DD E+ +R + SP R G R RSPSP R R SPDYGR + SP Y
Sbjct: 121 EYALRDDDEKGERGNGYSPDRRGRERSPGRRRSPSPYGRGRERGSPDYGRSKERGSPDYG 180
Query: 186 RYNGPVYDQRRSPDHGRHRSPVP------VYDRRRSPDYGRNR----SPNFGRYRSRSPV 235
R RSPD+GR SP RSPDY R R P + R SRSP
Sbjct: 181 RGG-------RSPDNGRGVSPAGGGRGDHARGGGRSPDYDRQRREASPPGYDRSPSRSPG 233
Query: 236 RRSR 239
R +R
Sbjct: 234 REAR 237
>gi|224130148|ref|XP_002320764.1| predicted protein [Populus trichocarpa]
gi|222861537|gb|EEE99079.1| predicted protein [Populus trichocarpa]
Length = 262
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 109/204 (53%), Positives = 130/204 (63%), Gaps = 8/204 (3%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGS--KSMANQRPT 65
+GFAFVY ED+RDA DAIR LD FG RRL VEW + ER R +S N P+
Sbjct: 35 SGFAFVYMEDERDAEDAIRRLDRAEFGRKGRRLRVEWTKQERESRRPAGSRRSSTNTTPS 94
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
KTLFVINFDP+ TR RD++RHF+P+G +L RIRRNFAFVQ+E QE+ATKALE+TD SK
Sbjct: 95 KTLFVINFDPVHTRTRDLERHFDPHGKILSTRIRRNFAFVQYELQEDATKALEATDMSKF 154
Query: 126 VDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYG--RSPSPAYRRRPSPDYGRGRSPA 183
+DRVISVEYA +DD R+ R Y RSPSP R R SPDYG RS
Sbjct: 155 MDRVISVEYAARDDERRNGYSPERRDRDRSPDRNYNRERSPSPDRRDRGSPDYGH-RSKT 213
Query: 184 YDR---YNGPVYDQRRSPDHGRHR 204
R YD+ SP++ R+R
Sbjct: 214 NSRPEPRGNHNYDKAESPENERYR 237
>gi|1707370|emb|CAA67799.1| splicing factor [Arabidopsis thaliana]
Length = 356
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 126/248 (50%), Positives = 151/248 (60%), Gaps = 28/248 (11%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPT-- 65
AGFAFVY ED+RDA DAIR LD +G RRL VEW + +RG S +
Sbjct: 35 AGFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRP 94
Query: 66 -KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
KTLFVINFD TR RD++RHFEPYG +++VRIRRN+AF+Q+E QE+AT+AL++T+ SK
Sbjct: 95 SKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNYAFIQYEAQEDATRALDATNSSK 154
Query: 125 LVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAY 184
L+D+VISVEYA+KDD R + Y SP R RSPSP R R SPDYGRG SP
Sbjct: 155 LMDKVISVEYAVKDDDSRGNGY-SPERRRDRSPDRRRRSPSPYRRERGSPDYGRGASPVA 213
Query: 185 DRYNGPVYDQRRSPDHGR-HRSPVPVYDRRRSPDYG-----------------RNRSPNF 226
+ +R SPD+GR RSP P R SPDY RNRSP
Sbjct: 214 HKR------ERTSPDYGRGRRSPSPYKRARLSPDYKRDDRRRERVASPENGAVRNRSPRK 267
Query: 227 GRYRSRSP 234
GR SRSP
Sbjct: 268 GRGESRSP 275
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
K +F NF+ RE D++R F YG V V ++ FAFV E + +A A+ + DR +
Sbjct: 1 MKPVFCGNFE-YDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFE 59
Query: 125 L--VDRVISVEYALKD 138
R + VE+ D
Sbjct: 60 YGRTGRRLRVEWTKND 75
>gi|238481546|ref|NP_001154774.1| arginine/serine-rich-splicing factor RSP41 [Arabidopsis thaliana]
gi|332008782|gb|AED96165.1| arginine/serine-rich-splicing factor RSP41 [Arabidopsis thaliana]
Length = 324
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 126/247 (51%), Positives = 150/247 (60%), Gaps = 28/247 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPT--- 65
GFAFVY ED+RDA DAIR LD +G RRL VEW + +RG S +
Sbjct: 3 GFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPS 62
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
KTLFVINFD TR RD++RHFEPYG +++VRIRRNFAF+Q+E QE+AT+AL++T+ SKL
Sbjct: 63 KTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKL 122
Query: 126 VDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYD 185
+D+VISVEYA+KDD R + Y SP R RSPSP R R SPDYGRG SP
Sbjct: 123 MDKVISVEYAVKDDDSRGNGY-SPERRRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAH 181
Query: 186 RYNGPVYDQRRSPDHGR-HRSPVPVYDRRRSPDYG-----------------RNRSPNFG 227
+ +R SPD+GR RSP P R SPDY RNRSP G
Sbjct: 182 KR------ERTSPDYGRGRRSPSPYKRARLSPDYKRDDRRRERVASPENGAVRNRSPRKG 235
Query: 228 RYRSRSP 234
R SRSP
Sbjct: 236 RGESRSP 242
>gi|227206136|dbj|BAH57123.1| AT5G52040 [Arabidopsis thaliana]
Length = 323
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 126/247 (51%), Positives = 150/247 (60%), Gaps = 28/247 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPT--- 65
GFAFVY ED+RDA DAIR LD +G RRL VEW + +RG S +
Sbjct: 3 GFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPS 62
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
KTLFVINFD TR RD++RHFEPYG +++VRIRRNFAF+Q+E QE+AT+AL++T+ SKL
Sbjct: 63 KTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKL 122
Query: 126 VDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYD 185
+D+VISVEYA+KDD R + Y SP R RSPSP R R SPDYGRG SP
Sbjct: 123 MDKVISVEYAVKDDDSRGNGY-SPERRRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAH 181
Query: 186 RYNGPVYDQRRSPDHGR-HRSPVPVYDRRRSPDYG-----------------RNRSPNFG 227
+ +R SPD+GR RSP P R SPDY RNRSP G
Sbjct: 182 KR------ERTSPDYGRGRRSPSPYKRARLSPDYKRDDRRRERVASPENGAVRNRSPRKG 235
Query: 228 RYRSRSP 234
R SRSP
Sbjct: 236 RGESRSP 242
>gi|238481544|ref|NP_001154773.1| arginine/serine-rich-splicing factor RSP41 [Arabidopsis thaliana]
gi|332008781|gb|AED96164.1| arginine/serine-rich-splicing factor RSP41 [Arabidopsis thaliana]
Length = 329
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 125/246 (50%), Positives = 149/246 (60%), Gaps = 28/246 (11%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPT---K 66
FAFVY ED+RDA DAIR LD +G RRL VEW + +RG S + K
Sbjct: 10 FAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSK 69
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
TLFVINFD TR RD++RHFEPYG +++VRIRRNFAF+Q+E QE+AT+AL++T+ SKL+
Sbjct: 70 TLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLM 129
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDR 186
D+VISVEYA+KDD R + Y SP R RSPSP R R SPDYGRG SP +
Sbjct: 130 DKVISVEYAVKDDDSRGNGY-SPERRRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHK 188
Query: 187 YNGPVYDQRRSPDHGR-HRSPVPVYDRRRSPDYG-----------------RNRSPNFGR 228
+R SPD+GR RSP P R SPDY RNRSP GR
Sbjct: 189 R------ERTSPDYGRGRRSPSPYKRARLSPDYKRDDRRRERVASPENGAVRNRSPRKGR 242
Query: 229 YRSRSP 234
SRSP
Sbjct: 243 GESRSP 248
>gi|358248400|ref|NP_001240131.1| uncharacterized protein LOC100796509 [Glycine max]
gi|255636874|gb|ACU18770.1| unknown [Glycine max]
Length = 374
Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 127/272 (46%), Positives = 157/272 (57%), Gaps = 57/272 (20%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQ--RPT 65
+GFAF+Y ED+RDA AIR LD + FG RRL VEW + ERG R S ++ RP+
Sbjct: 40 SGFAFIYMEDERDAEAAIRALDRVEFGRKGRRLRVEWTKHERGVRRPASSRRSSAIGRPS 99
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
KTLFVINFD TR RD++RHFEPYG ++ VRIRRNFAFVQ+E++++A++ALE+T+ SKL
Sbjct: 100 KTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDASRALEATNMSKL 159
Query: 126 VDRVISVEYALKDDSERDDRYD-------------------SPRRGGYGRHSP-YGRSPS 165
+DRVISVE+A+KDD +R + Y SP R G SP YGR PS
Sbjct: 160 LDRVISVEFAVKDDDDRRNGYSPERGRDRQRDRSRDGRRSPSPYRKERG--SPDYGRGPS 217
Query: 166 PAYRRRPSPDYGRGR------------SPAYDR-----------YNGPVYDQRRSP---- 198
P R R SPDYGR R SPAY R + PV D RSP
Sbjct: 218 PYQRERGSPDYGRDRSRSRSPPRRERASPAYGRRSISPYRREREGSEPVRDSSRSPYHKE 277
Query: 199 ----DHGRHRSPVPVYDRRRSPD--YGRNRSP 224
DHG S P R+SP +G +RSP
Sbjct: 278 RGRTDHGISPSQSPEGRGRKSPQNGHGSSRSP 309
Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALEST 120
Q + +F NF+ R+ +++R F YG V V ++ FAF+ E + +A A+ +
Sbjct: 2 QQGKMRPIFCGNFE-YDARQSELERLFRRYGKVDRVDMKSGFAFIYMEDERDAEAAIRAL 60
Query: 121 DRSKL 125
DR +
Sbjct: 61 DRVEF 65
>gi|6759507|emb|CAB69816.1| putative arginine/serine-rich splicing factor [Elaeis guineensis]
Length = 114
Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/113 (77%), Positives = 98/113 (86%), Gaps = 2/113 (1%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR-GERGRHRDGSKSMANQRPTK 66
G+AFVYFED+ DA DAIRG D+IPFGY RRRLSV+W+R GERG R G +SM N RPTK
Sbjct: 1 TGYAFVYFEDEHDAEDAIRGPDDIPFGYSRRRLSVKWSRQGERG-PRHGFRSMTNMRPTK 59
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALES 119
TLFVINFDPIRTR RDI+RHFEPYG +L+V+IRRNFAFVQFETQEEATKALE
Sbjct: 60 TLFVINFDPIRTRVRDIERHFEPYGKILNVQIRRNFAFVQFETQEEATKALEC 112
>gi|343171992|gb|AEL98700.1| arginine/serine-rich-splicing factor, partial [Silene latifolia]
Length = 340
Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 112/237 (47%), Positives = 140/237 (59%), Gaps = 41/237 (17%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG-RHRDGSKSMANQRPTKT 67
GFAF+Y +D+RDA AIR LD FG RRL VEW + E+G R S+ AN RP+KT
Sbjct: 35 GFAFIYMDDERDAGYAIRALDRTDFGRKGRRLRVEWTKHEQGGRKPVSSRKSANLRPSKT 94
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFVINF P T+ RD++RHF+PYG +++VRIR NF FVQ+++QE+ATKAL++T+ SK +D
Sbjct: 95 LFVINF-PSHTQTRDLERHFDPYGKIVNVRIRGNFGFVQYDSQEDATKALDATNMSKFLD 153
Query: 128 RVISVEYALKDDSERDDRYDSPRRGGYG-----------------------RHSP-YGRS 163
RVI+VEY+ + D D RR GY R SP YG
Sbjct: 154 RVITVEYSSRGD-------DDSRRNGYSPDRRVRDRSPDRRRRSPSPFRRERGSPDYGTG 206
Query: 164 PSP-AYRR-RPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDY 218
PSP +YRR R SP YG G S P QR SP + R RS P D R SP+Y
Sbjct: 207 PSPISYRRERGSPVYGNGSS------RSPRRLQRASPGYNRKRSLTPRRDVRASPEY 257
Score = 36.6 bits (83), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
+F NFD R D++R F +G V V ++ FAF+ + + +A A+ + DR+
Sbjct: 3 IFCGNFD-FEARASDLERLFRRFGKVDRVDMKNGFAFIYMDDERDAGYAIRALDRTDF 59
>gi|343171990|gb|AEL98699.1| arginine/serine-rich-splicing factor, partial [Silene latifolia]
Length = 340
Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 112/237 (47%), Positives = 140/237 (59%), Gaps = 41/237 (17%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG-RHRDGSKSMANQRPTKT 67
GFAF+Y +D+RDA AIR LD FG RRL VEW + E+G R S+ AN RP+KT
Sbjct: 35 GFAFIYMDDERDAGYAIRALDRTDFGRKGRRLRVEWTKHEQGGRKPVSSRKSANLRPSKT 94
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFVINF P T+ RD++RHF+PYG +++VRIR NF FVQ+++QE+ATKAL++T+ SK +D
Sbjct: 95 LFVINF-PSHTQTRDLERHFDPYGKIVNVRIRGNFGFVQYDSQEDATKALDATNMSKFLD 153
Query: 128 RVISVEYALKDDSERDDRYDSPRRGGYG-----------------------RHSP-YGRS 163
RVI+VEY+ + D D RR GY R SP YG
Sbjct: 154 RVITVEYSSRGD-------DDSRRNGYSPDRRVRDRSPDRRRRSPSPFRRERGSPDYGTG 206
Query: 164 PSP-AYRR-RPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDY 218
PSP +YRR R SP YG G S P QR SP + R RS P D R SP+Y
Sbjct: 207 PSPISYRRERGSPVYGNGSS------RSPRRLQRASPAYNRKRSLTPRRDVRASPEY 257
Score = 36.6 bits (83), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
+F NFD R D++R F +G V V ++ FAF+ + + +A A+ + DR+
Sbjct: 3 IFCGNFD-FEARASDLERLFRRFGKVDRVDMKNGFAFIYMDDERDAGYAIRALDRTDF 59
>gi|255646388|gb|ACU23673.1| unknown [Glycine max]
Length = 234
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 80/132 (60%), Positives = 102/132 (77%), Gaps = 3/132 (2%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGS---KSMANQRP 64
+GFAFVY ED+RDA AIR LD FG RR+ VEW + ER R G KS +N RP
Sbjct: 35 SGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGGDSRKSSSNSRP 94
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
+KTLFVINFDP+ R RD++RHF+ YG +L++RIRRNFAF+QFE+QE+AT+ALE+T+ SK
Sbjct: 95 SKTLFVINFDPVHARTRDLERHFDSYGKILNIRIRRNFAFIQFESQEDATRALEATNLSK 154
Query: 125 LVDRVISVEYAL 136
+DRVI+VEYA+
Sbjct: 155 FMDRVITVEYAI 166
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
K +F N D R+ D++R F YG V V ++ FAFV E + +A A+ DR++
Sbjct: 1 MKPVFCGNLD-FDARQSDVERLFRRYGKVDRVDMKSGFAFVYMEDERDAEYAIRRLDRTE 59
Query: 125 L--VDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAY 168
R I VE+ ERD R R GG R S PS
Sbjct: 60 FGRKGRRIRVEWT---KQERDSR----RSGGDSRKSSSNSRPSKTL 98
>gi|449529618|ref|XP_004171795.1| PREDICTED: arginine/serine-rich-splicing factor RSP40-like, partial
[Cucumis sativus]
Length = 282
Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 102/177 (57%), Positives = 119/177 (67%), Gaps = 11/177 (6%)
Query: 57 KSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKA 116
+S N RP+KTLFVINFDP TR RD++RHF+PYG +L VRIRRNFAFVQ+E QE+AT+A
Sbjct: 6 RSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRA 65
Query: 117 LESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDY 176
LE T+ SKL+DRVISVEYA++DD ++ + Y SP R RS SP R R SPDY
Sbjct: 66 LELTNMSKLMDRVISVEYAVRDDDDKRNGY-SPDRNRDRSPDRKRRSSSPYRRERGSPDY 124
Query: 177 GRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRR---SPDYGRNRSPNFGRYR 230
G G S P QR SPD+G RSP P Y R R SPDYGR RSPN YR
Sbjct: 125 GNGIS------RSPYRRQRASPDYGSRRSPSP-YQRERERGSPDYGRGRSPNHSPYR 174
>gi|194693536|gb|ACF80852.1| unknown [Zea mays]
gi|194699312|gb|ACF83740.1| unknown [Zea mays]
gi|414588140|tpg|DAA38711.1| TPA: arginine/serine-rich splicing factor 2 variant 1 isoform 1
[Zea mays]
gi|414588141|tpg|DAA38712.1| TPA: hypothetical protein ZEAMMB73_778058 [Zea mays]
Length = 137
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 82/134 (61%), Positives = 94/134 (70%), Gaps = 8/134 (5%)
Query: 76 IRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
+ TR DI+RHF P+GN+ VRIR+NFAFVQFET EEA KALE+T + L+DRVISVEYA
Sbjct: 1 MNTRVSDIERHFTPFGNISSVRIRKNFAFVQFETMEEARKALEATHATTLLDRVISVEYA 60
Query: 136 LKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYN--GPVYD 193
+DDSE DRY SPRRGG SP YR RPSPDYGR SP Y Y+ GPV D
Sbjct: 61 FRDDSEVSDRYGSPRRGGGYGRR----GDSPVYRSRPSPDYGRPASPVYGSYDGPGPVRD 116
Query: 194 Q-RRSPDHGRHRSP 206
+ RRSP + R RSP
Sbjct: 117 RYRRSPAY-RSRSP 129
>gi|194698618|gb|ACF83393.1| unknown [Zea mays]
Length = 138
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/152 (58%), Positives = 99/152 (65%), Gaps = 21/152 (13%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 137
TR DI+RHF P+GN+ VRIR+NFAFV+FET EEA KALE+T + L+DRVISVEYA +
Sbjct: 3 TRVSDIERHFAPFGNISSVRIRKNFAFVRFETLEEARKALEATHATMLLDRVISVEYAFR 62
Query: 138 DDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRS 197
DD ER DRYDSPRRGG SPAYR RPSPDYGR SP Y Y
Sbjct: 63 DDDERSDRYDSPRRGGGYGRR----GDSPAYRSRPSPDYGRPASPVYGSY---------- 108
Query: 198 PDHGRHRSPVPVYDR-RRSPDYGRNRSPNFGR 228
GR RS PV DR RRSP Y R+RSP R
Sbjct: 109 ---GRSRS--PVRDRYRRSPAY-RSRSPPANR 134
>gi|413917963|gb|AFW57895.1| hypothetical protein ZEAMMB73_539697 [Zea mays]
gi|413917964|gb|AFW57896.1| hypothetical protein ZEAMMB73_539697 [Zea mays]
gi|413917965|gb|AFW57897.1| arginine/serine-rich splicing factor 1 variant 3 isoform 3 [Zea
mays]
gi|413917966|gb|AFW57898.1| hypothetical protein ZEAMMB73_539697 [Zea mays]
Length = 121
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/130 (59%), Positives = 86/130 (66%), Gaps = 17/130 (13%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 137
TR DI+RHF P+GN+ VRIR+NFAFV+FET EEA KALE+T + L+DRVISVEYA +
Sbjct: 3 TRVSDIERHFAPFGNISSVRIRKNFAFVRFETLEEARKALEATHATMLLDRVISVEYAFR 62
Query: 138 DDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRS 197
DD ER DRYDSPRRGG SPAYR RPSPDYGR SP Y Y
Sbjct: 63 DDDERSDRYDSPRRGGGYGRR----GDSPAYRSRPSPDYGRPASPVYGSY---------- 108
Query: 198 PDHGRHRSPV 207
GR RSPV
Sbjct: 109 ---GRSRSPV 115
>gi|384252478|gb|EIE25954.1| hypothetical protein COCSUDRAFT_12541 [Coccomyxa subellipsoidea
C-169]
Length = 162
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 78/118 (66%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
GFAFVY D RD DAIRGLD FG RRRL VEWA+ + R +P T
Sbjct: 38 TGFAFVYMRDSRDGDDAIRGLDGREFGNRRRRLRVEWAKMDGEVRRREDLRRRQMKPATT 97
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
LFV+NFD RTRERD+++HFEP+G + V+I+RN+AFVQFE ++A AL+S + + L
Sbjct: 98 LFVVNFDADRTRERDLEKHFEPFGRLKRVQIKRNYAFVQFENVDQAADALKSVNGTHL 155
>gi|440802526|gb|ELR23455.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 348
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 86/129 (66%), Gaps = 6/129 (4%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER--GRHRDGSKSMANQRPTK 66
G+AFV+ E+ A +R LD G R+RL VE ARG+ + D + A +RP++
Sbjct: 95 GYAFVFLENGHHRA--VRELDGSLHG--RKRLRVELARGDGLIKKREDERRRDAARRPSE 150
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
TLFV+NFD I TR RD++ F PYG ++ + ++RNF FVQF EEAT+ALE+ + +K+V
Sbjct: 151 TLFVVNFDAISTRARDLEDLFSPYGRIVRIELKRNFGFVQFSAVEEATRALEALNGTKMV 210
Query: 127 DRVISVEYA 135
DRVISVEY
Sbjct: 211 DRVISVEYV 219
>gi|159475431|ref|XP_001695822.1| hypothetical protein CHLREDRAFT_80366 [Chlamydomonas reinhardtii]
gi|158275382|gb|EDP01159.1| predicted protein [Chlamydomonas reinhardtii]
Length = 170
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 83/132 (62%), Gaps = 8/132 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA-RGERGRHRDGSKSMANQRPTKT 67
G+AFV D AIR LD +GY +R L VEWA + E R RD +P++T
Sbjct: 41 GYAFVCMRYKEDGDVAIRKLDRTEWGYKKRMLKVEWAQKSEADRKRDT-------KPSRT 93
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFV+NFD RT ERDI+R+F +G + V+I+++++FVQF+ E+A KA+E + +++
Sbjct: 94 LFVVNFDVRRTTERDIERYFGRFGRLTRVQIKKSYSFVQFQNVEDAIKAMERANGAQMEG 153
Query: 128 RVISVEYALKDD 139
R ++VEY +D
Sbjct: 154 RTLAVEYVQNED 165
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALES 119
++RP + LF+ NF+ ERDI R E YG V + +++ +AFV +E+ A+
Sbjct: 1 MSERPDRPLFIGNFE-YEAEERDIVRLMEKYGPVEKIDMKQGYAFVCMRYKEDGDVAIRK 59
Query: 120 TDRSKL--VDRVISVEYALKDDSER 142
DR++ R++ VE+A K +++R
Sbjct: 60 LDRTEWGYKKRMLKVEWAQKSEADR 84
>gi|302835886|ref|XP_002949504.1| hypothetical protein VOLCADRAFT_80657 [Volvox carteri f.
nagariensis]
gi|300265331|gb|EFJ49523.1| hypothetical protein VOLCADRAFT_80657 [Volvox carteri f.
nagariensis]
Length = 139
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 77/117 (65%), Gaps = 8/117 (6%)
Query: 20 DAADAIRGLDNIPFGYDRRRLSVEWA-RGERGRHRDGSKSMANQRPTKTLFVINFDPIRT 78
D +A+R LD +GY RR+L VEWA + E R RD RP+KTLFV+NFD RT
Sbjct: 6 DGDEAVRRLDRTEWGYKRRQLRVEWAQKTEADRKRDT-------RPSKTLFVVNFDVRRT 58
Query: 79 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
ERDI+R+F +G + V+I++N++FVQF E A +ALE ++ +++ R ++VE+
Sbjct: 59 SERDIERYFSRFGRLSRVQIKKNYSFVQFVDVESAVRALERSNGAQMDGRTLAVEFV 115
>gi|307105692|gb|EFN53940.1| hypothetical protein CHLNCDRAFT_25380 [Chlorella variabilis]
Length = 277
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 79/127 (62%), Gaps = 2/127 (1%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR-PTK 66
+GF FV+++D RDA DAI LD +G RRRL VE+A+ + R+ K+ N P +
Sbjct: 41 SGFCFVHYKDKRDAEDAIHALDGREWGRLRRRLRVEFAKND-ANVREREKARRNSADPNR 99
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
TLFV FDP R RDI++ FE +G ++ I++ F+FV+FE E+A +A E S++
Sbjct: 100 TLFVAGFDPRGIRTRDIEKAFEEFGRLVRCEIKKTFSFVEFERIEDAKEACEQLHGSRIN 159
Query: 127 DRVISVE 133
R I+VE
Sbjct: 160 GREITVE 166
>gi|159477703|ref|XP_001696948.1| hypothetical protein CHLREDRAFT_120019 [Chlamydomonas reinhardtii]
gi|158274860|gb|EDP00640.1| predicted protein [Chlamydomonas reinhardtii]
Length = 169
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 69/127 (54%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFVY D A+ L +G RRRL VEW + + P+ L
Sbjct: 43 GFAFVYMRHVCDGEAAVAALHGWEWGVQRRRLKVEWGKVRAVWAVGSGHRCSGSPPSHKL 102
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FVINFDP RT E+++ R+F P+G V V++ RNFAFV F +A A + T+ + L R
Sbjct: 103 FVINFDPSRTGEQELWRYFSPFGRVTRVQMVRNFAFVVFADLRDAVAAQQRTNGAILEGR 162
Query: 129 VISVEYA 135
++VE++
Sbjct: 163 TLNVEFS 169
>gi|219123281|ref|XP_002181956.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406557|gb|EEC46496.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 361
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 78/136 (57%), Gaps = 6/136 (4%)
Query: 9 GFAFVYFEDDRDAADA------IRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQ 62
G+ FV+ +D AD + ++ + L E+ARG+ R + N
Sbjct: 79 GYCFVFLKDAATQADKEQAERFVSDINGMQIANVSNSLRAEFARGDGRVKRKEDERRKNI 138
Query: 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDR 122
P++TLFV+NF T++ D++ FEP+G ++ + ++RN+AFVQF+T EATKA E+T+
Sbjct: 139 APSETLFVVNFHEETTKKEDLQMLFEPFGELVRIDLKRNYAFVQFKTIAEATKAKETTNG 198
Query: 123 SKLVDRVISVEYALKD 138
KL V++VEY ++
Sbjct: 199 GKLDQSVLTVEYVARE 214
>gi|294461876|gb|ADE76495.1| unknown [Picea sitchensis]
Length = 149
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/144 (48%), Positives = 79/144 (54%), Gaps = 33/144 (22%)
Query: 123 SKLVDRVISVEYALKDDSERDDRYDSPRRGG--YGRH---------------------SP 159
SK++DR I+VEYA ++D R SP RGG YGR SP
Sbjct: 2 SKILDREITVEYAQREDGNRRGGRSSPIRGGGRYGRSAEDRGRDRSASPIYGRRAMRGSP 61
Query: 160 -YGRSPSPAYRRRP---SPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPV-PVYDRRR 214
YGR+PSP Y RRP SPDYGR SP Y R G RRSPD+ R SPV R+
Sbjct: 62 DYGRAPSPIYSRRPERRSPDYGRAPSPIYSRRQG-----RRSPDYARDASPVYASRPRKN 116
Query: 215 SPDYGRNRSPNFGRYRSRSPVRRS 238
SPDYGR+ SP R RSRSPVRRS
Sbjct: 117 SPDYGRDPSPIHERDRSRSPVRRS 140
>gi|281209187|gb|EFA83362.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 503
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 5/127 (3%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+AFV+ D DA I G+ Y R L+V+ ARGE + + K +P T+
Sbjct: 96 GYAFVFLHDKDDADKLIDGMHKT--NYRGRTLTVQHARGENRKLLNREKK---AKPCPTI 150
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
F+++++ T E I R +P+G+++ + +R+ F FV+F E+ATKALE+ + ++
Sbjct: 151 FLVHYNVDTTTEESISRLCKPFGDIVRIEMRKTFCFVEFTDAEQATKALEALHKKEIDGS 210
Query: 129 VISVEYA 135
+ VE+
Sbjct: 211 KLVVEFV 217
>gi|294463259|gb|ADE77165.1| unknown [Picea sitchensis]
Length = 102
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/82 (62%), Positives = 60/82 (73%), Gaps = 6/82 (7%)
Query: 123 SKLVDRVISVEYALKDDSERDDRYDSP-RRGGYG-RHSP-YGRSPSPAYRR---RPSPDY 176
SKL+DRVISVEYA++DD +R+ + +SP RRGGYG R SP Y RS SP Y R RPSPDY
Sbjct: 2 SKLLDRVISVEYAIRDDDDRNGQRESPGRRGGYGKRVSPAYDRSVSPIYGRQGRRPSPDY 61
Query: 177 GRGRSPAYDRYNGPVYDQRRSP 198
GR SP Y+RY G V D+ SP
Sbjct: 62 GRAPSPIYERYRGSVNDRIHSP 83
>gi|397573588|gb|EJK48771.1| hypothetical protein THAOC_32400 [Thalassiosira oceanica]
Length = 366
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 6/133 (4%)
Query: 9 GFAFVYFEDDRDAADA------IRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQ 62
G+ FV+ +D + A+ ++ + + + E+ARG+ R +
Sbjct: 97 GYCFVFLKDAFNQAEKERAERFVQEICGMQVPNVSNAVRAEFARGDGRIKRKEDERRRQI 156
Query: 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDR 122
+P +TLFV+NF T+ D+ F PYG ++ + ++RN+AFVQFET ++A A E+T+
Sbjct: 157 QPNETLFVVNFHEETTKREDLDMLFSPYGKIVRIEMKRNYAFVQFETIDQAIAAKEATNG 216
Query: 123 SKLVDRVISVEYA 135
KL ++VEY
Sbjct: 217 GKLDQSELTVEYV 229
>gi|449018009|dbj|BAM81411.1| similar to splicing factor RSp31 [Cyanidioschyzon merolae strain
10D]
Length = 301
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 74/152 (48%), Gaps = 22/152 (14%)
Query: 8 AGFAFVYFEDDRDAAD---AIRGLDNIPFGYDRRRLSVEWARGER----GRHRDGSKSMA 60
+ + FVYF +D AI L+ G R L+ EWARG R ++ K++
Sbjct: 60 SNYCFVYFSEDTAVEAYEHAIAALNGQRLGSQSRILTAEWARGTAPASISRLQESEKTLG 119
Query: 61 NQ---------------RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFV 105
+ +KTLFV+NFDP RD+ HF +G + + R++FAF+
Sbjct: 120 GEDSITGGDGACLENSVTTSKTLFVVNFDPDEITSRDLLIHFHRFGPIERIERRKHFAFI 179
Query: 106 QFETQEEATKALESTDRSKLVDRVISVEYALK 137
+F + ++A +A D + + R +SVE++ K
Sbjct: 180 EFRSLDDAIRARSEMDGAYIGCRQVSVEFSQK 211
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQF------ETQEEATKALE 118
K L++ N R +RDI++ EPYG V + ++ N+ FV F E E A AL
Sbjct: 27 VKALYIANIG--RAPQRDIEKLVEPYGKVQRIEMKSNYCFVYFSEDTAVEAYEHAIAALN 84
Query: 119 STDRSKLVDRVISVEYA 135
R R+++ E+A
Sbjct: 85 G-QRLGSQSRILTAEWA 100
>gi|452824262|gb|EME31266.1| arginine/serine-rich splicing factor, putative [Galdieria
sulphuraria]
Length = 483
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 78/138 (56%), Gaps = 10/138 (7%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIP----FGYDRRRLSVEWARGER--GRHRDGSKSMAN 61
+GFAFV+ ED A AIR L+ FG+ R L VE+A+ + + K A
Sbjct: 90 SGFAFVFLEDGEQAERAIRLLNGTKNEELFGF--RTLKVEYAKDASLVKQREEERKRRAE 147
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
+ PT++LFV NF P RERD++R F+ +G V++V I R++AFV F + ++A+ A E
Sbjct: 148 RNPTESLFVTNF-PSYFRERDLERIFDQFGKVVNVEIIRSYAFVTFASIKDASFAYEKMH 206
Query: 122 RSKLVD-RVISVEYALKD 138
L D R + VEY +
Sbjct: 207 HFTLDDGRELHVEYVTAN 224
>gi|224005402|ref|XP_002296352.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|209586384|gb|ACI65069.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 173
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 4/127 (3%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+ FV+ +D D + R + N L E+ARG+ R + P++TL
Sbjct: 39 GYCFVFLKDAVDEVEK-RRIQNYVVDIS---LRAEFARGDGRIKRKEDERRKKITPSETL 94
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV+NF T+ D+++ F+ YG ++ V ++RN+AFVQF+T +EA A + T+ KL
Sbjct: 95 FVVNFHEQTTKREDLEQLFQQYGELVRVDMKRNYAFVQFKTVDEAQAAKDGTNGGKLDQS 154
Query: 129 VISVEYA 135
I+VE+
Sbjct: 155 EITVEFV 161
>gi|54312090|ref|NP_001005882.1| RNA-binding protein 47 [Rattus norvegicus]
gi|81910667|sp|Q66H68.1|RBM47_RAT RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|51859195|gb|AAH81995.1| Hypothetical RNA binding protein RGD1359713 [Rattus norvegicus]
gi|149035343|gb|EDL90047.1| hypothetical RNA binding protein RGD1359713, isoform CRA_a [Rattus
norvegicus]
gi|149035344|gb|EDL90048.1| hypothetical RNA binding protein RGD1359713, isoform CRA_a [Rattus
norvegicus]
Length = 590
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 78/166 (46%), Gaps = 9/166 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IKR F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEETIKRSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRP 172
+ V A D E+ RY +GG G + PS Y P
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYSCDP 353
>gi|26330794|dbj|BAC29127.1| unnamed protein product [Mus musculus]
Length = 590
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 9/166 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEETIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRP 172
+ V A D E+ RY +GG G + PS Y P
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYSCDP 353
>gi|20532346|ref|NP_620704.1| RNA-binding protein 47 [Mus musculus]
gi|188497698|ref|NP_848541.2| RNA-binding protein 47 [Mus musculus]
gi|188497701|ref|NP_001120854.1| RNA-binding protein 47 [Mus musculus]
gi|81916136|sp|Q91WT8.1|RBM47_MOUSE RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|15488668|gb|AAH13481.1| RNA binding motif protein 47 [Mus musculus]
gi|21707976|gb|AAH34195.1| Rbm47 protein [Mus musculus]
gi|26351775|dbj|BAC39524.1| unnamed protein product [Mus musculus]
gi|74206583|dbj|BAE41553.1| unnamed protein product [Mus musculus]
gi|133778325|gb|AAI12903.1| RNA binding motif protein 47 [Mus musculus]
gi|148705813|gb|EDL37760.1| cDNA sequence BC013481, isoform CRA_a [Mus musculus]
gi|148705814|gb|EDL37761.1| cDNA sequence BC013481, isoform CRA_a [Mus musculus]
Length = 590
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 9/166 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEETIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRP 172
+ V A D E+ RY +GG G + PS Y P
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYSCDP 353
>gi|74216343|dbj|BAE25115.1| unnamed protein product [Mus musculus]
Length = 377
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 9/166 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNL-MIETTEETIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRP 172
+ V A D E+ RY +GG G + PS Y P
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYSCDP 353
>gi|126342214|ref|XP_001362315.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Monodelphis
domestica]
Length = 583
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 7/144 (4%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAF+ +E R AA A R L ++++V+WA E D +++ K L
Sbjct: 194 GFAFIEYESHRAAAMARRKLMPGRIQLWGQQIAVDWAEPEMDVDEDVMETV------KIL 247
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
+V N I+T E I++ F +G V V+ R++AFV F ++E+A +A+ S + ++L
Sbjct: 248 YVRNLM-IKTSEETIRKTFSQFGCVERVKKIRDYAFVHFTSREDAIRAMNSLNGTELEGS 306
Query: 129 VISVEYALKDDSERDDRYDSPRRG 152
+ V A D E+ RY +G
Sbjct: 307 CLGVTLAKPVDKEQYARYRKAVKG 330
>gi|330801718|ref|XP_003288871.1| hypothetical protein DICPUDRAFT_98159 [Dictyostelium purpureum]
gi|325081064|gb|EGC34594.1| hypothetical protein DICPUDRAFT_98159 [Dictyostelium purpureum]
Length = 467
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 76/129 (58%), Gaps = 10/129 (7%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+AFV + D+ ++ LD F +++L+++ A+GE ++G+K +RP +
Sbjct: 105 GYAFVVVNKE-DSDRCVKELDGKEFF--KKQLTIQLAKGEC--KKEGNKP---RRPCPAI 156
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD- 127
F++N++ ++T I + +P+G + +++ +N+ FV+F + EATKAL + K+VD
Sbjct: 157 FIVNYNVLKTTINLIIKLCQPHGVINRIQMVKNYCFVEFSSTIEATKALNYLN-YKIVDG 215
Query: 128 RVISVEYAL 136
++VEY
Sbjct: 216 HTLTVEYVC 224
>gi|343172766|gb|AEL99086.1| RNA recognition motif-containing protein, partial [Silene
latifolia]
Length = 507
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 104/243 (42%), Gaps = 31/243 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLD--NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK 66
GF F+ F DA A + L ++ FG+ R + V ++ E + D + MA K
Sbjct: 277 GFCFIQFACHDDAMFAFKRLQKPDVIFGHAERTVKVAFS--EPLQEPD-PEIMAK---VK 330
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALE 118
++F+ P +R +++HF+ YG + V + RN F FV F T E A +E
Sbjct: 331 SVFIDGLPPYWDEDR-VRKHFQGYGEIKRVTLARNMPAAKRKDFGFVDFMTHEAAIACIE 389
Query: 119 STDRSKLVD--RVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRS---PSPAYRRRPS 173
++ LVD I V L + + RGG+ P GRS P P RP+
Sbjct: 390 DVNKKDLVDGNSKIKVRARLSNPLPKMQAVKGGMRGGFRIGRPNGRSLGRPGPLI-NRPN 448
Query: 174 PDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRSRS 233
YGR +++ GP RR P G H +P P P G P G + R
Sbjct: 449 FQYGRASRGSFNDPAGPYV--RRHPHRGGHSAPGPSV-----PGRGNFGGPRHG-FIERG 500
Query: 234 PVR 236
PVR
Sbjct: 501 PVR 503
>gi|255580168|ref|XP_002530915.1| RNA binding protein, putative [Ricinus communis]
gi|223529509|gb|EEF31464.1| RNA binding protein, putative [Ricinus communis]
Length = 354
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 65/181 (35%), Gaps = 19/181 (10%)
Query: 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEAT 114
P LFV RT +K+ F +G V+ R+ + F FV++ + E+A
Sbjct: 49 EPNTNLFVSGLSK-RTTTEGLKQAFSKFGEVVQARVVTDRVSGYSKGFGFVRYGSLEDAE 107
Query: 115 KALESTDRSKLVDRVISVEYA-----LKDDSERDDRYDSPRRGGYGRH--SPYGRSPSPA 167
K +E D L VI EYA L + Y + YG S YG S A
Sbjct: 108 KGIEGMDGKFLDGWVIFAEYARPRPPLPGN-NTGSAYGNNTGSAYGNSTGSAYGNSTGSA 166
Query: 168 YRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 227
Y YG AY G Y +G S Y YG N +P FG
Sbjct: 167 YGNSTGSAYGNSTGSAYGNSTGSAYGNSTGSAYG--NSTGSAYGNSTGSAYGSNTTPAFG 224
Query: 228 R 228
Sbjct: 225 N 225
>gi|149610011|ref|XP_001505728.1| PREDICTED: RNA-binding protein 47 isoform 1 [Ornithorhynchus
anatinus]
Length = 591
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 9/147 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 200 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 253
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A +A+ S + ++L
Sbjct: 254 YVRNLM-IETTEEAIKKSFGQFNPGCVERVKKIRDYAFVHFVSREDAVRAMNSLNGTELE 312
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGG 153
+ V A D E+ RY +GG
Sbjct: 313 GSCLEVTLAKPVDKEQYTRYQKAAKGG 339
>gi|111226838|ref|XP_001134599.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|90970796|gb|EAS66915.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 737
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 46/72 (63%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRS 123
P++ +F++N++ +T DI PYGNV V++ +NF FV+FET ++A+KAL++ D
Sbjct: 223 PSRAIFIVNYNVSKTTTNDIADWCSPYGNVNRVQMVKNFCFVEFETIDQASKALKALDLK 282
Query: 124 KLVDRVISVEYA 135
++VEY
Sbjct: 283 SFDGHSLTVEYV 294
>gi|291385687|ref|XP_002709446.1| PREDICTED: RNA binding motif protein 47-like isoform 1 [Oryctolagus
cuniculus]
Length = 591
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 9/147 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 196 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 249
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A +A+ S + ++L
Sbjct: 250 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAVRAMNSLNGTELE 308
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGG 153
+ V A D E+ RY +GG
Sbjct: 309 GSCLEVTLAKPVDKEQYSRYQKAAKGG 335
>gi|351713281|gb|EHB16200.1| RNA-binding protein 47 [Heterocephalus glaber]
Length = 585
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 10/166 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 191 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 244
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 245 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMSNLNGTELE 303
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRP 172
+ V A D E+ RY +GG G + PS Y P
Sbjct: 304 GSCLEVTLAKPVDKEQYSRYQKAAKGG-GVAEAVAQPPSYVYSCDP 348
>gi|149610013|ref|XP_001505770.1| PREDICTED: RNA-binding protein 47 isoform 2 [Ornithorhynchus
anatinus]
Length = 522
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 9/147 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 200 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 253
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A +A+ S + ++L
Sbjct: 254 YVRNLM-IETTEEAIKKSFGQFNPGCVERVKKIRDYAFVHFVSREDAVRAMNSLNGTELE 312
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGG 153
+ V A D E+ RY +GG
Sbjct: 313 GSCLEVTLAKPVDKEQYTRYQKAAKGG 339
>gi|403300669|ref|XP_003941042.1| PREDICTED: RNA-binding protein 47 [Saimiri boliviensis boliviensis]
Length = 631
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 11/166 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRP 172
+ V A D E+ RY RGG + + PS Y P
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQKAARGGSAAEA--AQQPSYVYSCDP 351
>gi|296196676|ref|XP_002745942.1| PREDICTED: RNA-binding protein 47 isoform 1 [Callithrix jacchus]
Length = 594
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 11/166 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRP 172
+ V A D E+ RY RGG + + PS Y P
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQKAARGGSAAEA--AQQPSYVYSCDP 351
>gi|296196678|ref|XP_002745943.1| PREDICTED: RNA-binding protein 47 isoform 2 [Callithrix jacchus]
Length = 525
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 11/166 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRP 172
+ V A D E+ RY RGG + + PS Y P
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQKAARGGSAAEA--AQQPSYVYSCDP 351
>gi|291385689|ref|XP_002709447.1| PREDICTED: RNA binding motif protein 47-like isoform 2 [Oryctolagus
cuniculus]
Length = 522
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 9/147 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 196 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 249
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A +A+ S + ++L
Sbjct: 250 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAVRAMNSLNGTELE 308
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGG 153
+ V A D E+ RY +GG
Sbjct: 309 GSCLEVTLAKPVDKEQYSRYQKAAKGG 335
>gi|260812205|ref|XP_002600811.1| hypothetical protein BRAFLDRAFT_229359 [Branchiostoma floridae]
gi|229286101|gb|EEN56823.1| hypothetical protein BRAFLDRAFT_229359 [Branchiostoma floridae]
Length = 531
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 79/160 (49%), Gaps = 14/160 (8%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D KS+ K L
Sbjct: 183 GFAFVEYESHRAAAMARRKLIPGRIQLWGHQIAVDWAEPEVEVDEDIMKSV------KVL 236
Query: 69 FVINFDPIRTRERDIKRHFEPY---GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
+V N + T E +K FE G+V V+ R++AFV F+T+EEA KA+ +T+ +L
Sbjct: 237 YVRNLL-LTTTEESLKESFENVVSPGSVERVKKIRDYAFVHFKTREEAVKAMNATN-GQL 294
Query: 126 VDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPS 165
+D VE L +RD+ R G GR P P+
Sbjct: 295 IDGC-QVEVTLAKPVDRDNYVRYTR--GAGRGMPMEIYPT 331
>gi|348571794|ref|XP_003471680.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Cavia porcellus]
Length = 592
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 73/147 (49%), Gaps = 9/147 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A +A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAVQAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGG 153
+ V A D E+ RY +GG
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQKAAKGG 334
>gi|348571796|ref|XP_003471681.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Cavia porcellus]
Length = 523
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 10/166 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A +A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAVQAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRP 172
+ V A D E+ RY +GG G + PS Y P
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQKAAKGG-GVAEAAVQPPSYVYSCDP 352
>gi|343172764|gb|AEL99085.1| RNA recognition motif-containing protein, partial [Silene
latifolia]
Length = 507
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 104/243 (42%), Gaps = 31/243 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLD--NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK 66
GF F+ F DA A + L ++ FG+ R + V ++ E + D + MA K
Sbjct: 277 GFCFIQFACHDDAMFAFKRLQKPDVIFGHAERTVKVAFS--EPLQEPD-PEIMAK---VK 330
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALE 118
++F+ P +R +++HF+ YG + V + RN F FV F T E A ++
Sbjct: 331 SVFIDGLPPYWDEDR-VRKHFQGYGEIERVTLARNMPAAKRKDFGFVDFLTHEAAIACID 389
Query: 119 STDRSKLVD--RVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRS---PSPAYRRRPS 173
++ LVD I V L + + RGG+ P GRS P P RP+
Sbjct: 390 DINKKDLVDGNSKIKVRARLSNPLPKMQAVKGGMRGGFRIGRPNGRSLGRPGPLI-NRPN 448
Query: 174 PDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRSRS 233
YGR +++ GP RR P G H +P P P G P G + R
Sbjct: 449 FQYGRASRGSFNDPAGPYV--RRHPHRGGHSAPGPSV-----PGRGNFGGPRHG-FIERG 500
Query: 234 PVR 236
PVR
Sbjct: 501 PVR 503
>gi|410906771|ref|XP_003966865.1| PREDICTED: RNA-binding protein 4.1-like [Takifugu rubripes]
Length = 416
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 89/209 (42%), Gaps = 25/209 (11%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
F FV+ +D +A +AIR L + + + ++VE +RG+ R + L
Sbjct: 37 FGFVHMDDKAEADEAIRNLHQ--YELNGQPMNVELSRGK-------------SRGSTKLH 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N I ++++ FE +G VL I +N+AFV E E+A A+ D + ++
Sbjct: 82 VGN---IACTNQELRAKFEEFGAVLECDIVKNYAFVHMERMEDAMDAINQLDNTAFKGKL 138
Query: 130 ISVEYALK------DDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPA 183
+SV+ + R Y + G + + P ++ P P+PD G
Sbjct: 139 MSVKLSTSRLRTAPGMGNRSGCYRCGQEGHWSKECPLDQNGHPRNGSEPNPD-GYDTPKY 197
Query: 184 YDRYNGPVYDQRRSPDHGRHRSPVPVYDR 212
R G +D PDHG + V + R
Sbjct: 198 AGRGKGYHHDFSGDPDHGGGYAAVHGFSR 226
>gi|126331699|ref|XP_001365552.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Monodelphis
domestica]
Length = 592
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 9/146 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ S + ++L
Sbjct: 249 YVRNLM-IETTEETIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNSLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYDSPRRG 152
+ V A D E+ RY +G
Sbjct: 308 GSCLEVTLAKPVDKEQYTRYQKAAKG 333
>gi|355715825|gb|AES05414.1| RNA binding motif protein 47 [Mustela putorius furo]
Length = 387
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 10/166 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 88 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 141
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 142 YVRNL-MIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFVSREDAVHAMNNLNGTELE 200
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRP 172
+ V A D E+ RY +GG G + PS Y P
Sbjct: 201 GSCLEVTLAKPVDKEQYSRYQKAAKGG-GVAEAAVQQPSYVYSCDP 245
>gi|126331701|ref|XP_001365615.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Monodelphis
domestica]
Length = 523
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 9/146 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ S + ++L
Sbjct: 249 YVRNLM-IETTEETIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNSLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYDSPRRG 152
+ V A D E+ RY +G
Sbjct: 308 GSCLEVTLAKPVDKEQYTRYQKAAKG 333
>gi|46249455|gb|AAH68622.1| LOC414671 protein, partial [Xenopus laevis]
Length = 323
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 25/152 (16%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF +V F DA A++ + Y+ R++ V+ A+ ++ +K + TK +
Sbjct: 46 GFGYVTFSMVEDAQRAMKEIKE----YEGRKIEVQVAKKKQVEKNKKTKCEESSETTKEV 101
Query: 69 --------------FVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQF 107
+I + E D+K+HF +G+VL V I R FAFVQ
Sbjct: 102 KKPKDARGAYKKARLIIRNLSFQCSEDDLKKHFSNFGSVLEVNIPKKPDGKMRGFAFVQL 161
Query: 108 ETQEEATKALESTDRSKLVDRVISVEYALKDD 139
+ EA+KAL+ T+ + R ++V++A+ D
Sbjct: 162 KNMLEASKALKGTNMKSIKGRTVAVDWAVAKD 193
>gi|328770953|gb|EGF80994.1| hypothetical protein BATDEDRAFT_36927 [Batrachochytrium
dendrobatidis JAM81]
Length = 246
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR-GERGRHRDGSKSMANQRPTKT 67
GFAFV + D RDA D +R LD YDR RLSV+ A+ G R R S S+ R
Sbjct: 40 GFAFVEYSDSRDARDCVRELDG--SRYDRERLSVQPAKSGSDRRDRPASSSL---RRGDY 94
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNF-AFVQFETQEEATKALESTDRSKLV 126
V+ P RT +D+K F G+V+ I + V+F ++ + A+E D+++
Sbjct: 95 GIVVQGLPARTSWQDLKDLFRKVGDVIFTNIDNSGDGIVEFTSETDKNSAIEQFDKTEFQ 154
Query: 127 DRVISVE 133
VISV+
Sbjct: 155 GAVISVK 161
>gi|365985359|ref|XP_003669512.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
gi|343768280|emb|CCD24269.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
Length = 585
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 68/148 (45%), Gaps = 17/148 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT- 67
GF FV FE+ DAA A+ L+ F + L V A+ + R ++ K R K
Sbjct: 262 GFGFVDFENHEDAAKAVEELNGSQF--KDQELFVSRAQKKYERMQELKKQYEASRLEKMA 319
Query: 68 ------LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEAT 114
LF+ N D E+ +K F PYGN+ VR+ R F FV F T EEAT
Sbjct: 320 KYQGVNLFIKNLDDSIDDEK-LKEEFAPYGNITSVRVMRTENGKSRGFGFVCFSTPEEAT 378
Query: 115 KALESTDRSKLVDRVISVEYALKDDSER 142
KA+ ++ + + + V A + D R
Sbjct: 379 KAITEKNQQIVAGKPLYVAIAQRKDVRR 406
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 13/136 (9%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF FV+FEDD A +AI L+ + + +R ER + SK+ +
Sbjct: 169 GFGFVHFEDDTAAKEAIDALNGMLLNGQEIFVGPHLSRKERDSQLEESKA-----NFTNI 223
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTD 121
+V N + + T + + F YG VL + + F FV FE E+A KA+E +
Sbjct: 224 YVKNIN-LETTDEEFTELFSKYGKVLSAALEKTEDGKLKGFGFVDFENHEDAAKAVEELN 282
Query: 122 RSKLVDRVISVEYALK 137
S+ D+ + V A K
Sbjct: 283 GSQFKDQELFVSRAQK 298
>gi|221128969|ref|XP_002161622.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like [Hydra
magnipapillata]
Length = 277
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 40/180 (22%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
+ LFV N +P R RD++ F YG ++ +++NF F+QFE + +A A++ + +
Sbjct: 2 SSELFVGNLNP-EVRVRDLENCFGRYGKIVRCDLKKNFGFIQFEDRRDAEIAIQKENNRR 60
Query: 125 LVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPD--YGRGRSP 182
L+ ++VE+A RG G G P P +R+ SPD GRG P
Sbjct: 61 LLGSDMTVEWA---------------RGTVGDKM-RGNGP-PPFRKPHSPDRFQGRGGPP 103
Query: 183 AYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN----FGRYRSRSPVRRS 238
R P P GR RSP+ GR+RSP GR R RSP+ RS
Sbjct: 104 FISRPRSP-------PVRGRDRSPI---------LRGRDRSPGIRQAMGRGRERSPLGRS 147
>gi|395542863|ref|XP_003773344.1| PREDICTED: RNA-binding protein 47 isoform 1 [Sarcophilus harrisii]
Length = 590
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 9/146 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++++A A+ S + ++L
Sbjct: 249 YVRNLM-IETTEETIKKSFGQFNPGCVERVKKIRDYAFVHFTSRDDAVHAMNSLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYDSPRRG 152
+ V A D E+ RY +G
Sbjct: 308 GSCLEVTLAKPVDKEQYTRYQKAAKG 333
>gi|410929393|ref|XP_003978084.1| PREDICTED: uncharacterized protein LOC101079487 [Takifugu rubripes]
Length = 568
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 21/158 (13%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
FAFV+ + + A AIR L+ F R L VE +RG R H + +F
Sbjct: 42 FAFVHLQGEGAAERAIRELNGREF--RGRNLVVEESRG-RPLH------------STKVF 86
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N + T E D+++ F+ +G VL + +AFV ET+E+A +A+E+ + R
Sbjct: 87 VGNLSGMCTTE-DLQQLFQTFGKVLECDKVKGYAFVHMETKEDALQAIEALHGTSFKGRP 145
Query: 130 ISVEYALKDDSERDDRYDSP-----RRGGYGRHSPYGR 162
+SVE + S++ P ++G Y P G+
Sbjct: 146 LSVELSKVQPSKQTPTGKIPCVNCGKQGHYAGECPVGK 183
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKAL 117
T +FV N + T + ++ FEPYG V+ + R FAFV + + A +A+
Sbjct: 6 TVKIFVGNLA-LDTTQEELSAIFEPYGQVVSCSVLRQFAFVHLQGEGAAERAI 57
>gi|348544591|ref|XP_003459764.1| PREDICTED: RNA-binding protein 4.1-like [Oreochromis niloticus]
Length = 419
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 18/124 (14%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
F FV+ +D +A +AIR L + + + ++VE +RG+ R + L
Sbjct: 37 FGFVHMDDKTEAEEAIRNLHQ--YELNGQPMNVELSRGK-------------SRGSTKLH 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N I ++++ FE +G VL I +N+AFV E E+A +A+ D + ++
Sbjct: 82 VGN---IACTNQELRAKFEEFGTVLECDIVKNYAFVHMERMEDAMEAINQLDNTAFKGKL 138
Query: 130 ISVE 133
+SV+
Sbjct: 139 MSVK 142
>gi|395542865|ref|XP_003773345.1| PREDICTED: RNA-binding protein 47 isoform 2 [Sarcophilus harrisii]
Length = 521
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 9/146 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++++A A+ S + ++L
Sbjct: 249 YVRNLM-IETTEETIKKSFGQFNPGCVERVKKIRDYAFVHFTSRDDAVHAMNSLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYDSPRRG 152
+ V A D E+ RY +G
Sbjct: 308 GSCLEVTLAKPVDKEQYTRYQKAAKG 333
>gi|395856660|ref|XP_003800739.1| PREDICTED: RNA-binding protein 47 [Otolemur garnettii]
Length = 591
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ S + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAVHAMNSLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYD 147
+ V A D E+ RY
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQ 328
>gi|197632059|gb|ACH70753.1| zgc:56141-like [Salmo salar]
gi|209155072|gb|ACI33768.1| RNA-binding protein 4B [Salmo salar]
Length = 347
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 30/170 (17%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
FAFV+ +D + A AIR L + ++VE +RG+ NQ K L
Sbjct: 37 FAFVHMDDRKSATKAIRSLHL--YKLHGTAINVEASRGK------------NQGAVK-LH 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N + + + +++ FE YG V I +NFAFV + +EA A++ D + +
Sbjct: 82 VTNVE--KGNDDELRTLFEEYGTVSECAIVKNFAFVHMDNSDEALDAIKGLDNVEFQGKR 139
Query: 130 ISVEYAL-KDDSERDDRYDSPRRGGYG--------RHSPYGRSPSPAYRR 170
I V+ + + E ++ Y P+RGGY RH P P P+Y R
Sbjct: 140 IHVQISKSRPRYEEEEDYPPPQRGGYWPPRGYPGERHDP----PPPSYLR 185
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ N P + +I+ F YG V I +NFAFV + ++ ATKA+ S KL
Sbjct: 4 IFIGNV-PREADKDEIQALFSQYGAVTECAIVKNFAFVHMDDRKSATKAIRSLHLYKLHG 62
Query: 128 RVISVE 133
I+VE
Sbjct: 63 TAINVE 68
>gi|291233435|ref|XP_002736660.1| PREDICTED: apobec-1 complementation factor-like [Saccoglossus
kowalevskii]
Length = 625
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 18/165 (10%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E+ R AA A R L +++V+WA E+ D K++ K L
Sbjct: 199 GFAFVEYENHRAAAMARRKLIPGRIQLWGHQIAVDWAEPEQEVDEDIMKTV------KVL 252
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N + T E I++ F G+V V+ R++AFV F T+E+A AL + + +
Sbjct: 253 YVRNLM-LNTTEETIEKEFNSLKEGSVERVKKIRDYAFVHFVTREDALYALNAMNGHNVD 311
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGG------YGRHSPYGRSPS 165
V+ V A D E RY RGG G +P+G P+
Sbjct: 312 GSVVEVVLAKPVDRENYVRY---TRGGARGTFSQGYVAPFGYDPN 353
>gi|417403083|gb|JAA48365.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Desmodus rotundus]
Length = 590
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 9/147 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N + T E IK+ F + G V V+ R++AFV F ++E+A A++ + + L
Sbjct: 249 YVRNLM-METTEDTIKKIFGQFNPGCVERVKKIRDYAFVHFASREDAVHAMKKLNGTDLE 307
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGG 153
+ V A D E+ RY +GG
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQKAAKGG 334
>gi|213983189|ref|NP_001135499.1| RNA binding motif protein 47 [Xenopus (Silurana) tropicalis]
gi|195539941|gb|AAI67901.1| Unknown (protein for MGC:135580) [Xenopus (Silurana) tropicalis]
Length = 412
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 9/147 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A +++ + ++L
Sbjct: 249 YVRNL-MIETSEDTIKKIFGQFNPGCVERVKKIRDYAFVHFSSREDAVQSMRKLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGG 153
I V A D E+ RY +GG
Sbjct: 308 GSCIEVTLAKPVDKEQYTRYQKAAKGG 334
>gi|313227332|emb|CBY22478.1| unnamed protein product [Oikopleura dioica]
Length = 248
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 65/133 (48%), Gaps = 9/133 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFG-YDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
GFAFV FE DA+ + L N + R +V+WA E + ++ K
Sbjct: 17 GFAFVEFESHMDASTVKKNLLNRSLALFGRYYQNVDWADPENTPDDNVMSTV------KN 70
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL-V 126
L+V + RT E +IK FEPYG V V+ NF+FV F ++ A KA+E+ +
Sbjct: 71 LYVKGWSEARTEE-EIKALFEPYGVVEKVKKINNFSFVHFVERDSALKAIEAMNGKNFGN 129
Query: 127 DRVISVEYALKDD 139
D VI V A +D
Sbjct: 130 DEVIDVSLAKPND 142
>gi|327273505|ref|XP_003221521.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 47-like [Anolis
carolinensis]
Length = 603
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 9/142 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 197 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 250
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A +A+ + + ++L
Sbjct: 251 YVRNLM-IETTEDTIKKVFGQFNPGCVERVKKIRDYAFVHFTSREDAVQAMNNLNNTELE 309
Query: 127 DRVISVEYALKDDSERDDRYDS 148
+ V A D E+ RY +
Sbjct: 310 GSCLEVTLAKPVDKEQYTRYQN 331
>gi|50950169|ref|NP_001002955.1| RNA-binding protein 47 [Canis lupus familiaris]
gi|75075043|sp|Q9XSR3.1|RBM47_CANFA RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|5441611|emb|CAB46854.1| hypothetical protein [Canis lupus familiaris]
Length = 592
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 197 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 250
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ S + ++L
Sbjct: 251 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAVLAMNSLNGTELE 309
Query: 127 DRVISVEYALKDDSERDDRY 146
+ V A D E+ RY
Sbjct: 310 GSCLEVTLAKPVDKEQYSRY 329
>gi|366987097|ref|XP_003673315.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
gi|342299178|emb|CCC66926.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
Length = 575
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 66/148 (44%), Gaps = 17/148 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT- 67
GF FV FE DAA A+ L+ F + L V A+ + R ++ K R K
Sbjct: 257 GFGFVDFEKHEDAAKAVEELNGTEF--KDQTLFVSRAQKKYERMQELKKQYEASRLEKMA 314
Query: 68 ------LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEAT 114
LFV N D E+ +K F PYG + VR+ R F FV F T EEAT
Sbjct: 315 KYQGVNLFVKNLDDSIDDEK-LKEEFAPYGTITSVRVMRTDNGKSKGFGFVCFSTPEEAT 373
Query: 115 KALESTDRSKLVDRVISVEYALKDDSER 142
KA+ ++ + + + V A + D R
Sbjct: 374 KAITEKNQQIVAGKPLYVAIAQRKDVRR 401
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 13/136 (9%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF FV+FE + A +AI L+ + ++ R ER + +K+ +
Sbjct: 164 GFGFVHFEHESSAKEAIDALNGMLLNGQEIYVAPHLTRKERDSQLEETKAHFT-----NV 218
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTD 121
+V N + + T + + F YGNVL + + F FV FE E+A KA+E +
Sbjct: 219 YVKNIN-LETTDEEFNELFAKYGNVLSSSLEKTEDGKLKGFGFVDFEKHEDAAKAVEELN 277
Query: 122 RSKLVDRVISVEYALK 137
++ D+ + V A K
Sbjct: 278 GTEFKDQTLFVSRAQK 293
>gi|156399642|ref|XP_001638610.1| predicted protein [Nematostella vectensis]
gi|156225732|gb|EDO46547.1| predicted protein [Nematostella vectensis]
Length = 411
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 9/150 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV + RDAA A R L +++V+WA E+ + + + +Q K L
Sbjct: 181 GFAFVEYISHRDAAMARRKLMTGKIQLWGHQIAVDWAEPEQ----EVDQEIMDQ--VKVL 234
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
+ N + T E I++ F +G V V+ +++ F+ F T+E+A A+E+ + ++L
Sbjct: 235 YARNL-LLSTTEETIEQAFSKFGEVERVKKIKDYCFIHFRTKEQARDAMEAMNETELDGN 293
Query: 129 VISVEYALKDDSERDDRYDSPRRGGYGRHS 158
+E L ++D R RG YG S
Sbjct: 294 --EIEVTLAKPVDKDHRSPLLFRGYYGTPS 321
>gi|221222294|gb|ACM09808.1| RNA-binding protein 4B [Salmo salar]
Length = 229
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 30/170 (17%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
FAFV+ +D + A AIR L + ++VE +RG+ NQ K L
Sbjct: 37 FAFVHMDDRKSATKAIRSLH--LYKLHGTAINVEASRGK------------NQGAVK-LH 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N + + + +++ FE YG V I +NFAFV + +EA A++ D + +
Sbjct: 82 VTNVE--KGNDDELRTLFEEYGTVSECAIVKNFAFVHMDNSDEALDAIKGLDNVEFQGKR 139
Query: 130 ISVEYA-LKDDSERDDRYDSPRRGGYG--------RHSPYGRSPSPAYRR 170
I V+ + + E ++ Y P+RGGY RH P P P+Y R
Sbjct: 140 IHVQISKSRPRYEEEEDYPPPQRGGYWPPRGYPGERHDP----PPPSYLR 185
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ N P + +I+ F YG V I +NFAFV + ++ ATKA+ S KL
Sbjct: 4 IFIGNV-PREADKDEIQALFSQYGAVTECAIVKNFAFVHMDDRKSATKAIRSLHLYKLHG 62
Query: 128 RVISVE 133
I+VE
Sbjct: 63 TAINVE 68
>gi|432888898|ref|XP_004075077.1| PREDICTED: RNA-binding protein 4.1-like [Oryzias latipes]
Length = 417
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 89/209 (42%), Gaps = 37/209 (17%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
F FV+ + +A +AIR L + + + ++VE +RG+ R + L
Sbjct: 37 FGFVHMDSKAEAEEAIRNLHQ--YELNAQPMNVELSRGK-------------SRGSTKLH 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N I ++++ FE +G VL I +N+AFV E E+A +A+ D + ++
Sbjct: 82 VGN---IACTNQELRAKFEEFGAVLECDIVKNYAFVHMERMEDAMEAINKLDNTAFKGKL 138
Query: 130 ISVEYALK------DDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDY------G 177
+SV+ + +R Y + G + + P ++ P +Y G
Sbjct: 139 MSVKLSTSRLRTAPGMGDRSGCYRCGQEGHWSKECPLDQNGFQRNGSEPKSEYDASGFGG 198
Query: 178 RGRSPAYDRYNGPVYDQRRSPDHGRHRSP 206
R +S AY + G PD+G +P
Sbjct: 199 REQSMAYPDFGG-------EPDYGSSFAP 220
>gi|410906739|ref|XP_003966849.1| PREDICTED: RNA-binding protein 4.1-like [Takifugu rubripes]
Length = 343
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 16/129 (12%)
Query: 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK 66
Y +AFV+ ED + A AIR L + R ++VE +RG+ +Q P K
Sbjct: 34 YKNYAFVHMEDRKSATKAIRELHLHKL--NGRPINVELSRGK-----------GHQGPVK 80
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+ + N + + +++++ FE YG V I +NFAFV EEA A++ D S+
Sbjct: 81 -IHIANVE--KGFDKELRELFEEYGTVSECAIVKNFAFVHMPNSEEAMDAIQGLDNSEFQ 137
Query: 127 DRVISVEYA 135
+ I V+ +
Sbjct: 138 GKRIHVQIS 146
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ N P T + +++ F YG V +N+AFV E ++ ATKA+ KL
Sbjct: 4 IFIGNLSP-ETEKDEVEALFVQYGTVTECAKYKNYAFVHMEDRKSATKAIRELHLHKLNG 62
Query: 128 RVISVEYA 135
R I+VE +
Sbjct: 63 RPINVELS 70
>gi|209155952|gb|ACI34208.1| RNA-binding protein 4B [Salmo salar]
Length = 345
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 18/149 (12%)
Query: 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK 66
+ +AFV+ +D + A AIR L F R ++VE +RG+ NQ P K
Sbjct: 34 FKNYAFVHMDDRKSATKAIRSLHL--FKLHGRPINVEPSRGK------------NQGPVK 79
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
L V N + + +++ FE YG V I +NFAF+ +EA A++ D +
Sbjct: 80 -LHVANVE--KGNGDELRTLFEEYGTVTECAIIKNFAFIHMSNSDEAKDAIKGLDNTDFQ 136
Query: 127 DRVISVEYALKDDSERDDRYDSPR-RGGY 154
+ I V+ + ++ Y P RGGY
Sbjct: 137 GKRIHVQMSKSRPRGEEEDYGPPLDRGGY 165
>gi|383127582|gb|AFG44445.1| Pinus taeda anonymous locus 2_3502_02 genomic sequence
Length = 90
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 57/97 (58%), Gaps = 16/97 (16%)
Query: 150 RRGGYGRHSPYGRSPSPAYRRRP---SPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSP 206
RRG YG RS SP Y RR SPDYGR SP Y R+ +R SPD+GR SP
Sbjct: 4 RRGSYGSRD---RSASPLYSRRALRDSPDYGRAPSPIYARH-----PERSSPDYGRAASP 55
Query: 207 VPVYDRRR---SPDYGRNRSPNFGRYRSRSPVRRSRT 240
+ Y RR SPDYGR SP RYRSRSP+ RSR+
Sbjct: 56 I--YARRPQRDSPDYGRVVSPVHERYRSRSPLMRSRS 90
>gi|20450941|gb|AAM21973.1| RNA-binding protein [Homo sapiens]
Length = 593
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYD 147
+ V A D E+ RY
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQ 328
>gi|332219030|ref|XP_003258661.1| PREDICTED: RNA-binding protein 47 isoform 3 [Nomascus leucogenys]
Length = 555
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 157 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 210
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 211 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 269
Query: 127 DRVISVEYALKDDSERDDRYD 147
+ V A D E+ RY
Sbjct: 270 GSCLEVTLAKPVDKEQYSRYQ 290
>gi|332819357|ref|XP_001144567.2| PREDICTED: RNA-binding protein 47 isoform 1 [Pan troglodytes]
gi|402869222|ref|XP_003898665.1| PREDICTED: RNA-binding protein 47 isoform 4 [Papio anubis]
gi|426344164|ref|XP_004038645.1| PREDICTED: RNA-binding protein 47 isoform 3 [Gorilla gorilla
gorilla]
Length = 555
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 157 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 210
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 211 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 269
Query: 127 DRVISVEYALKDDSERDDRYD 147
+ V A D E+ RY
Sbjct: 270 GSCLEVTLAKPVDKEQYSRYQ 290
>gi|221044912|dbj|BAH14133.1| unnamed protein product [Homo sapiens]
Length = 555
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 157 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 210
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 211 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 269
Query: 127 DRVISVEYALKDDSERDDRYD 147
+ V A D E+ RY
Sbjct: 270 GSCLEVTLAKPVDKEQYSRYQ 290
>gi|397524566|ref|XP_003832261.1| PREDICTED: RNA-binding protein 47 isoform 4 [Pan paniscus]
Length = 555
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 157 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 210
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 211 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 269
Query: 127 DRVISVEYALKDDSERDDRYD 147
+ V A D E+ RY
Sbjct: 270 GSCLEVTLAKPVDKEQYSRYQ 290
>gi|207080144|ref|NP_001128783.1| DKFZP469N2326 protein [Pongo abelii]
gi|55727921|emb|CAH90713.1| hypothetical protein [Pongo abelii]
Length = 550
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 152 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 205
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 206 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 264
Query: 127 DRVISVEYALKDDSERDDRYD 147
+ V A D E+ RY
Sbjct: 265 GSCLEVTLAKPVDKEQYSRYQ 285
>gi|326919263|ref|XP_003205901.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Meleagris
gallopavo]
Length = 598
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 68/141 (48%), Gaps = 9/141 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F T+E+A A+ + + +L
Sbjct: 249 YVRNLM-IETTEDTIKKVFGQFNPGCVERVKKIRDYAFVHFTTREDAIHAMNNLNGVELE 307
Query: 127 DRVISVEYALKDDSERDDRYD 147
+ V A D E+ RY
Sbjct: 308 GSCLEVTLAKPVDKEQYTRYQ 328
>gi|444513680|gb|ELV10430.1| RNA-binding protein 47 [Tupaia chinensis]
Length = 580
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAVLAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYD 147
+ V A D E+ RY
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQ 328
>gi|363733760|ref|XP_003641292.1| PREDICTED: RNA-binding protein 47 isoform 2 [Gallus gallus]
Length = 597
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 68/141 (48%), Gaps = 9/141 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F T+E+A A+ + + +L
Sbjct: 249 YVRNLM-IETTEDTIKKVFGQFNPGCVERVKKIRDYAFVHFTTREDAIHAMNNLNGVELE 307
Query: 127 DRVISVEYALKDDSERDDRYD 147
+ V A D E+ RY
Sbjct: 308 GSCLEVTLAKPVDKEQYTRYQ 328
>gi|55727108|emb|CAH90310.1| hypothetical protein [Pongo abelii]
Length = 593
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYD 147
+ V A D E+ RY
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQ 328
>gi|397524560|ref|XP_003832258.1| PREDICTED: RNA-binding protein 47 isoform 1 [Pan paniscus]
gi|397524562|ref|XP_003832259.1| PREDICTED: RNA-binding protein 47 isoform 2 [Pan paniscus]
Length = 593
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYD 147
+ V A D E+ RY
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQ 328
>gi|197099430|ref|NP_001127604.1| RNA-binding protein 47 [Pongo abelii]
gi|55732443|emb|CAH92922.1| hypothetical protein [Pongo abelii]
Length = 593
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYD 147
+ V A D E+ RY
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQ 328
>gi|332219026|ref|XP_003258659.1| PREDICTED: RNA-binding protein 47 isoform 1 [Nomascus leucogenys]
gi|441663629|ref|XP_004091690.1| PREDICTED: RNA-binding protein 47 [Nomascus leucogenys]
Length = 593
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYD 147
+ V A D E+ RY
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQ 328
>gi|160017954|sp|Q5R5P4.2|RBM47_PONAB RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
Length = 593
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYD 147
+ V A D E+ RY
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQ 328
>gi|148833513|ref|NP_001092104.1| RNA-binding protein 47 isoform a [Homo sapiens]
gi|313104167|sp|A0AV96.2|RBM47_HUMAN RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
Length = 593
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYD 147
+ V A D E+ RY
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQ 328
>gi|109074059|ref|XP_001095125.1| PREDICTED: RNA-binding protein 47 isoform 5 [Macaca mulatta]
gi|109074063|ref|XP_001095351.1| PREDICTED: RNA-binding protein 47 isoform 7 [Macaca mulatta]
gi|114593726|ref|XP_001145550.1| PREDICTED: RNA-binding protein 47 isoform 13 [Pan troglodytes]
gi|402869216|ref|XP_003898662.1| PREDICTED: RNA-binding protein 47 isoform 1 [Papio anubis]
gi|402869218|ref|XP_003898663.1| PREDICTED: RNA-binding protein 47 isoform 2 [Papio anubis]
gi|410038246|ref|XP_003950365.1| PREDICTED: RNA-binding protein 47 [Pan troglodytes]
gi|426344160|ref|XP_004038643.1| PREDICTED: RNA-binding protein 47 isoform 1 [Gorilla gorilla
gorilla]
gi|426344162|ref|XP_004038644.1| PREDICTED: RNA-binding protein 47 isoform 2 [Gorilla gorilla
gorilla]
gi|116496675|gb|AAI26262.1| RBM47 protein [Homo sapiens]
gi|313883194|gb|ADR83083.1| RNA binding motif protein 47 (RBM47), transcript variant 1
[synthetic construct]
gi|355687243|gb|EHH25827.1| RNA-binding motif protein 47 [Macaca mulatta]
gi|355749234|gb|EHH53633.1| RNA-binding motif protein 47 [Macaca fascicularis]
Length = 593
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYD 147
+ V A D E+ RY
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQ 328
>gi|219521533|gb|AAI43943.1| RNA binding motif protein 47 [Homo sapiens]
Length = 593
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYD 147
+ V A D E+ RY
Sbjct: 308 GSCLEVTLAKPMDKEQYSRYQ 328
>gi|390358934|ref|XP_003729368.1| PREDICTED: APOBEC1 complementation factor-like isoform 1
[Strongylocentrotus purpuratus]
Length = 548
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 69/155 (44%), Gaps = 9/155 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E+ R AA A R L ++ V+WA E+ D R K L
Sbjct: 182 GFAFVEYENHRAAAMARRKLIPGRIQLWGHQIMVDWAEPEQDVDED------VMRGVKIL 235
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N + T E I + F + G+V V+ R+FAF+ F T+E+A A+ + D L
Sbjct: 236 YVRNL-MLHTTEETIAKEFNAFKEGSVERVKKLRDFAFIHFFTREDALNAMNAMDDPLLD 294
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYG 161
I V A D RY GY + YG
Sbjct: 295 GAKIEVVLAKPVDKGNYVRYTPGAGRGYVQQGLYG 329
>gi|344279159|ref|XP_003411358.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Loxodonta
africana]
Length = 593
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 194 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 247
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 248 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 306
Query: 127 DRVISVEYALKDDSERDDRYD 147
+ V A D E+ RY
Sbjct: 307 GSCLEVTLAKPVDKEQYSRYQ 327
>gi|350587465|ref|XP_003128987.3| PREDICTED: RNA-binding protein 47-like isoform 1 [Sus scrofa]
Length = 591
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYD 147
+ V A D E+ RY
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQ 328
>gi|329664912|ref|NP_001192963.1| RNA-binding protein 47 [Bos taurus]
gi|296486627|tpg|DAA28740.1| TPA: RNA binding motif protein 47 [Bos taurus]
gi|440900817|gb|ELR51867.1| RNA-binding protein 47 [Bos grunniens mutus]
Length = 591
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYD 147
+ V A D E+ RY
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQ 328
>gi|224049976|ref|XP_002187774.1| PREDICTED: RNA-binding protein 47 isoform 1 [Taeniopygia guttata]
Length = 594
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 68/141 (48%), Gaps = 9/141 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F T+E+A A+ + + +L
Sbjct: 249 YVRNLM-IETTEDTIKKVFGQFNPGCVERVKKIRDYAFVHFTTREDAIHAMNNLNGVELE 307
Query: 127 DRVISVEYALKDDSERDDRYD 147
+ V A D E+ RY
Sbjct: 308 GSCLEVTLAKPVDKEQYTRYQ 328
>gi|356510359|ref|XP_003523906.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Glycine max]
Length = 409
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 84/192 (43%), Gaps = 39/192 (20%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG----ERGRHRDGSKSMANQRP 64
G+ FV F DD + + A+ ++ + R+ R ++G +G+ S +
Sbjct: 216 GYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKTSGYQQGSQSNGTSSQSEADS 275
Query: 65 TKT-LFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTD 121
T T +FV DP T E D+K+ F YG ++ V+I + FVQF + A +AL+ +
Sbjct: 276 TNTTIFVGGLDPNVTAE-DLKQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLN 334
Query: 122 RSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRS 181
+ + +++ + +GRSP+ ++ D+G S
Sbjct: 335 GTTIGKQMVRLS--------------------------WGRSPA---NKQFRADFGNAWS 365
Query: 182 PAYDRYNGPVYD 193
AY Y GPVYD
Sbjct: 366 GAY--YGGPVYD 375
>gi|390358938|ref|XP_781163.2| PREDICTED: APOBEC1 complementation factor-like isoform 3
[Strongylocentrotus purpuratus]
Length = 567
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 69/155 (44%), Gaps = 9/155 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E+ R AA A R L ++ V+WA E+ D R K L
Sbjct: 182 GFAFVEYENHRAAAMARRKLIPGRIQLWGHQIMVDWAEPEQDVDED------VMRGVKIL 235
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N + T E I + F + G+V V+ R+FAF+ F T+E+A A+ + D L
Sbjct: 236 YVRNL-MLHTTEETIAKEFNAFKEGSVERVKKLRDFAFIHFFTREDALNAMNAMDDPLLD 294
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYG 161
I V A D RY GY + YG
Sbjct: 295 GAKIEVVLAKPVDKGNYVRYTPGAGRGYVQQGLYG 329
>gi|426231613|ref|XP_004009833.1| PREDICTED: RNA-binding protein 47 [Ovis aries]
Length = 546
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 150 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 203
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 204 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAVHAMNNLNGTELE 262
Query: 127 DRVISVEYALKDDSERDDRYD 147
+ V A D E+ RY
Sbjct: 263 GSCLEVTLAKPVDKEQYSRYQ 283
>gi|366999420|ref|XP_003684446.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
gi|357522742|emb|CCE62012.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
Length = 579
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 17/148 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-- 66
GF F+ FE+ DAA A+ L+++ F ++L V A+ + R ++ K R K
Sbjct: 272 GFGFINFENHDDAAKAVEELNDLEF--KGQKLYVGRAQKKYERLQELKKQYEASRLEKLA 329
Query: 67 -----TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEAT 114
LFV N D E+ ++ F P+G++ ++ RN F FV F T EEAT
Sbjct: 330 KYQGVNLFVKNLDDSIDDEK-LEAEFAPFGSITSAKVMRNEEGKSKNFGFVCFSTPEEAT 388
Query: 115 KALESTDRSKLVDRVISVEYALKDDSER 142
KA+ ++ + + + V A + D R
Sbjct: 389 KAITEKNQQIVAGKPLYVAIAQRKDVRR 416
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF FV+FE+D A +A+ ++ + + R + V ++ R + AN +
Sbjct: 179 GFGFVHFEEDNAAVEAVDAINGMML--NGREVYVAQHVSKKDRESKLEEVKAN---FTNV 233
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTD 121
+V N D + T E + F YG + + + R F F+ FE ++A KA+E +
Sbjct: 234 YVKNVD-VDTPEDEFTALFSKYGPITSIAMEKDSEGKFRGFGFINFENHDDAAKAVEELN 292
>gi|346327061|gb|EGX96657.1| arginine/serine-rich splicing factor, putative [Cordyceps militaris
CM01]
Length = 813
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 15/169 (8%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LF+ N + ++D+ F YG + + ++ + FVQ+ T EE ++A++S + ++
Sbjct: 355 LFIGNLSSDKVSKKDVFEIFHKYGRLAQISLKSAYGFVQYHTVEEGSRAVQSLEGIEIKG 414
Query: 128 RVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRY 187
R I +E + D + +R SP RG GR G Y R GR SP +
Sbjct: 415 RRIHLEVSKLQDKSKKERNKSPERGSRGRD---GARKGDKYYDRDERRGGRHHSPRRQGH 471
Query: 188 NG--PVYDQR-RSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRSRS 233
+G Y R + D GR R DR RSP YGR+ + RYR RS
Sbjct: 472 HGRDSSYSGRDKFHDSGRGR------DRSRSPGYGRS---DKSRYRKRS 511
>gi|119613372|gb|EAW92966.1| RNA-binding protein, isoform CRA_c [Homo sapiens]
Length = 514
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYD 147
+ V A D E+ RY
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQ 328
>gi|390358936|ref|XP_003729369.1| PREDICTED: APOBEC1 complementation factor-like isoform 2
[Strongylocentrotus purpuratus]
Length = 487
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 69/155 (44%), Gaps = 9/155 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E+ R AA A R L ++ V+WA E+ D R K L
Sbjct: 182 GFAFVEYENHRAAAMARRKLIPGRIQLWGHQIMVDWAEPEQDVDED------VMRGVKIL 235
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N + T E I + F + G+V V+ R+FAF+ F T+E+A A+ + D L
Sbjct: 236 YVRNL-MLHTTEETIAKEFNAFKEGSVERVKKLRDFAFIHFFTREDALNAMNAMDDPLLD 294
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYG 161
I V A D RY GY + YG
Sbjct: 295 GAKIEVVLAKPVDKGNYVRYTPGAGRGYVQQGLYG 329
>gi|116788096|gb|ABK24755.1| unknown [Picea sitchensis]
Length = 506
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 19/135 (14%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV + + A A++ + + F D + ++V+WA +R ++ K++
Sbjct: 250 GFAFVEYYNKGCAEKAMKNMTHSKFQLDDKLITVKWATSQR----------SSSEEVKSV 299
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALEST 120
+V N P E ++ F +G V V + +R+F FV + A KA+E T
Sbjct: 300 YVRNL-PENVTEEQLRELFGRHGEVTKVVLLEQKPGQPKRDFGFVHYADHSSAMKAIEKT 358
Query: 121 DRSKLVDRVISVEYA 135
++ L DR +SV A
Sbjct: 359 EKYTLEDRELSVSLA 373
>gi|281342615|gb|EFB18199.1| hypothetical protein PANDA_019026 [Ailuropoda melanoleuca]
Length = 594
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFVSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYD 147
+ V A D E+ RY
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQ 328
>gi|431893805|gb|ELK03622.1| RNA-binding protein 47 [Pteropus alecto]
Length = 578
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 186 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 239
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 240 YVRNLM-IETTEDTIKKIFGQFNPGCVERVKKIRDYAFVHFASREDAVHAMNNLNGTELE 298
Query: 127 DRVISVEYALKDDSERDDRY 146
+ V A D E+ RY
Sbjct: 299 GSCLEVTLAKPVDKEQYSRY 318
>gi|301787079|ref|XP_002928955.1| PREDICTED: RNA-binding protein 47-like [Ailuropoda melanoleuca]
Length = 630
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 231 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 284
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 285 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFVSREDAVHAMNNLNGTELE 343
Query: 127 DRVISVEYALKDDSERDDRYD 147
+ V A D E+ RY
Sbjct: 344 GSCLEVTLAKPVDKEQYSRYQ 364
>gi|395333502|gb|EJF65879.1| polyadenylate binding protein [Dichomitus squalens LYAD-421 SS1]
Length = 664
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 10/145 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+ FV++E A AI+ ++ + + + +R R R SK + +
Sbjct: 173 GYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISRKASSRERQ-SKLEEMKAQFTNI 231
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTD 121
+V N DP T++ D + FE +GNV I+ R F FV FET EEA KA+E+
Sbjct: 232 YVKNLDPEVTQD-DFVKLFEQFGNVTSAVIQTDEQGQSRGFGFVNFETHEEAQKAVETLH 290
Query: 122 RSKLVDRVISVEYALKDDSERDDRY 146
S+ R + V A K +ER++
Sbjct: 291 DSEYHGRKLFVSRAQK-KAEREEEL 314
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 17/141 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT- 67
GF FV FE +A A+ L + Y R+L V A+ + R + KS + K
Sbjct: 270 GFGFVNFETHEEAQKAVETLHDSE--YHGRKLFVSRAQKKAEREEELRKSYEQAKVEKMS 327
Query: 68 ------LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEAT 114
L++ N + ER +++ FEP+G++ ++ R+ F FV F + +EAT
Sbjct: 328 KYQGVNLYIKNLEDDIDDER-LRQEFEPFGSITSAKVMRDEKGTSKGFGFVCFSSPDEAT 386
Query: 115 KALESTDRSKLVDRVISVEYA 135
KA+ + + + + V A
Sbjct: 387 KAVAEMNNKMIGSKPLYVSLA 407
>gi|410957713|ref|XP_003985469.1| PREDICTED: RNA-binding protein 47 isoform 1 [Felis catus]
Length = 589
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFVSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYD 147
+ V A D E+ RY
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQ 328
>gi|410957715|ref|XP_003985470.1| PREDICTED: RNA-binding protein 47 isoform 2 [Felis catus]
Length = 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 232 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 285
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 286 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFVSREDAVHAMNNLNGTELE 344
Query: 127 DRVISVEYALKDDSERDDRYD 147
+ V A D E+ RY
Sbjct: 345 GSCLEVTLAKPVDKEQYSRYQ 365
>gi|118090545|ref|XP_001232620.1| PREDICTED: RNA-binding protein 47 isoform 1 [Gallus gallus]
Length = 528
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 9/140 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F T+E+A A+ + + +L
Sbjct: 249 YVRNLM-IETTEDTIKKVFGQFNPGCVERVKKIRDYAFVHFTTREDAIHAMNNLNGVELE 307
Query: 127 DRVISVEYALKDDSERDDRY 146
+ V A D E+ RY
Sbjct: 308 GSCLEVTLAKPVDKEQYTRY 327
>gi|326919265|ref|XP_003205902.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Meleagris
gallopavo]
Length = 529
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 9/140 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F T+E+A A+ + + +L
Sbjct: 249 YVRNLM-IETTEDTIKKVFGQFNPGCVERVKKIRDYAFVHFTTREDAIHAMNNLNGVELE 307
Query: 127 DRVISVEYALKDDSERDDRY 146
+ V A D E+ RY
Sbjct: 308 GSCLEVTLAKPVDKEQYTRY 327
>gi|167527097|ref|XP_001747881.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773630|gb|EDQ87268.1| predicted protein [Monosiga brevicollis MX1]
Length = 553
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 19/132 (14%)
Query: 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPT 65
+ + FV ++D DA A+ L++ P G D +L V AR +R R G +R
Sbjct: 247 QFGRYGFVAYKDTADAQKAVSELNDKPLGADGTKLYV--ARAQRKSERMGRLRREFERRR 304
Query: 66 K---------TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFET 109
L++ NF T E ++++ FE YG ++ VR+ R F FV F +
Sbjct: 305 TEMRAKYKDANLYIKNFSEDVT-EDELRKMFEAYGTIVSVRVVKDRDGQSRQFGFVLFSS 363
Query: 110 QEEATKALESTD 121
+EEAT+A++ +
Sbjct: 364 EEEATRAIQEMN 375
>gi|118600907|gb|AAH34402.1| RBM47 protein [Homo sapiens]
gi|119613370|gb|EAW92964.1| RNA-binding protein, isoform CRA_a [Homo sapiens]
Length = 497
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRY 146
+ V A D E+ RY
Sbjct: 308 GSCLEVTLAKPVDKEQYSRY 327
>gi|7020253|dbj|BAA91049.1| unnamed protein product [Homo sapiens]
Length = 524
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRY 146
+ V A D E+ RY
Sbjct: 308 GSCLEVTLAKPVDKEQYSRY 327
>gi|397524564|ref|XP_003832260.1| PREDICTED: RNA-binding protein 47 isoform 3 [Pan paniscus]
Length = 524
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRY 146
+ V A D E+ RY
Sbjct: 308 GSCLEVTLAKPVDKEQYSRY 327
>gi|146231848|gb|ABQ12999.1| hypothetical protein LOC54502 [Bos taurus]
Length = 492
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNL-MIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRY 146
+ V A D E+ RY
Sbjct: 308 GSCLEVTLAKPVDKEQYSRY 327
>gi|344279161|ref|XP_003411359.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Loxodonta
africana]
Length = 524
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 194 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 247
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 248 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 306
Query: 127 DRVISVEYALKDDSERDDRY 146
+ V A D E+ RY
Sbjct: 307 GSCLEVTLAKPVDKEQYSRY 326
>gi|350587467|ref|XP_003482419.1| PREDICTED: RNA-binding protein 47-like [Sus scrofa]
Length = 522
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRY 146
+ V A D E+ RY
Sbjct: 308 GSCLEVTLAKPVDKEQYSRY 327
>gi|358058378|dbj|GAA95897.1| hypothetical protein E5Q_02555 [Mixia osmundae IAM 14324]
Length = 680
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 75/155 (48%), Gaps = 28/155 (18%)
Query: 9 GFAFVYFEDDRDAADAI-----RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQ- 62
G+ FV F+ + +A A+ + L+ P AR RG+ G+ A +
Sbjct: 514 GYGFVGFDTEGNAQAAMTRRQGQLLEGRPL---------LLARARRGQDAKGAGGEAQES 564
Query: 63 ---RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEE 112
RPT TL + N P +++++ F+ YGN+ +R+ R FAFV+F + E
Sbjct: 565 KAGRPTSTLVIKNV-PFEVSKKELQALFKSYGNIKSLRMPRKADRHTRGFAFVEFRSTAE 623
Query: 113 ATKALESTDRSKLVDRVISVEYALKDD--SERDDR 145
A +A ++ ++ L+ R + +EY D S RDD+
Sbjct: 624 AKEAKQALSQTHLLGRHLVIEYGQADQGASLRDDK 658
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKAL 117
T LF+ N R D++ F +G V HV + RR A+V FET +EA +A
Sbjct: 185 TNRLFLRNL-AFTVRSSDLQTTFAQHGRVSHVHLVDEDKTERRGLAYVTFETAKEAEQAR 243
Query: 118 ESTDRSKLVDRVISVEYALKDDSERD 143
+ D + L R++ V A E D
Sbjct: 244 SALDGTILHGRLLHVMLAAARPGEAD 269
>gi|148833511|ref|NP_061900.2| RNA-binding protein 47 isoform b [Homo sapiens]
Length = 524
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRY 146
+ V A D E+ RY
Sbjct: 308 GSCLEVTLAKPVDKEQYSRY 327
>gi|109074069|ref|XP_001094904.1| PREDICTED: RNA-binding protein 47 isoform 3 [Macaca mulatta]
gi|114593728|ref|XP_001144637.1| PREDICTED: RNA-binding protein 47 isoform 2 [Pan troglodytes]
gi|402869220|ref|XP_003898664.1| PREDICTED: RNA-binding protein 47 isoform 3 [Papio anubis]
gi|426344166|ref|XP_004038646.1| PREDICTED: RNA-binding protein 47 isoform 4 [Gorilla gorilla
gorilla]
gi|119613373|gb|EAW92967.1| RNA-binding protein, isoform CRA_d [Homo sapiens]
gi|119613375|gb|EAW92969.1| RNA-binding protein, isoform CRA_d [Homo sapiens]
Length = 524
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRY 146
+ V A D E+ RY
Sbjct: 308 GSCLEVTLAKPVDKEQYSRY 327
>gi|452987975|gb|EME87730.1| hypothetical protein MYCFIDRAFT_120538, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 179
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 14/135 (10%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ F + DA AIR LD F + RR+SV++ R R+ ++ N +P+KTL
Sbjct: 44 GFGFIEFANRDDADRAIRELDQKVF--EGRRMSVQY---HVPRERNKAQRNVNTKPSKTL 98
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALEST 120
F+ N + +RD+ F NVL VR+ R FA F + ATKA E
Sbjct: 99 FIGNM-SYQMSDRDLNDLFRQIRNVLDVRVAIDRRSGQPRGFAHADFVDEASATKAKELL 157
Query: 121 DRSKLVDRVISVEYA 135
++ + R + V+Y+
Sbjct: 158 EQKVVYGRQLRVDYS 172
>gi|428183363|gb|EKX52221.1| hypothetical protein GUITHDRAFT_41825, partial [Guillardia theta
CCMP2712]
Length = 195
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
FAFV FED RDA DAIRG D I F R R + G RG + + + +R +
Sbjct: 38 AFAFVSFEDYRDAEDAIRGRDGISFEGARLRCEMSRGNGPRGSRQQPRRDL--RRSDYRV 95
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNF----AFVQFET---QEEATKALESTD 121
V N P + + D+K HF G V++ + R+ V+F + QE A K L+ T+
Sbjct: 96 IVSNLPPSASWQ-DLKDHFRQVGEVVYTDVDRSLKSSGGIVEFASRSEQEAAIKQLDDTE 154
Query: 122 RSKLVDRV 129
D+V
Sbjct: 155 FKNPFDKV 162
>gi|332219028|ref|XP_003258660.1| PREDICTED: RNA-binding protein 47 isoform 2 [Nomascus leucogenys]
Length = 524
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRY 146
+ V A D E+ RY
Sbjct: 308 GSCLEVTLAKPVDKEQYSRY 327
>gi|47212367|emb|CAF89932.1| unnamed protein product [Tetraodon nigroviridis]
Length = 636
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 287 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNMVTVEWADP---MEDPDPEVMAK---VKVL 340
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F YGN+ V+ +++AF+ FE ++ A KALE + +L
Sbjct: 341 FVRNLANSVTEEI-LEKAFSEYGNLERVKKLKDYAFIHFEERDGAVKALEELNGKELEGE 399
Query: 129 VISVEYALKDDSERDDR 145
I + +A D +R +R
Sbjct: 400 PIEIVFAKPPDQKRKER 416
>gi|367052423|ref|XP_003656590.1| hypothetical protein THITE_135180 [Thielavia terrestris NRRL 8126]
gi|347003855|gb|AEO70254.1| hypothetical protein THITE_135180 [Thielavia terrestris NRRL 8126]
Length = 2006
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 17/152 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR-----GERGRHRDGSKSMANQR 63
GF F F+ A A++ +D + D +L V + E R D +K A QR
Sbjct: 672 GFGFCAFKSKEQAQAALKVMDG--YVLDGHKLVVRASHRGHDAAEERRREDLAKKAAAQR 729
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKA 116
T VI P ++D++ F YG ++ +R+ R FAF +F T EA A
Sbjct: 730 ---TKIVIKNLPFEASKKDVRNLFSEYGKLVALRLPKKFNHTSRGFAFAEFATPREALNA 786
Query: 117 LESTDRSKLVDRVISVEYALKDDSERDDRYDS 148
L + + L+ R + +++A D+ + +++ +
Sbjct: 787 LTALKDTHLLGRRLVLDFAEADEVDPEEQIKA 818
>gi|361067831|gb|AEW08227.1| Pinus taeda anonymous locus 2_3502_02 genomic sequence
gi|361067833|gb|AEW08228.1| Pinus taeda anonymous locus 2_3502_02 genomic sequence
gi|383127576|gb|AFG44442.1| Pinus taeda anonymous locus 2_3502_02 genomic sequence
gi|383127578|gb|AFG44443.1| Pinus taeda anonymous locus 2_3502_02 genomic sequence
gi|383127580|gb|AFG44444.1| Pinus taeda anonymous locus 2_3502_02 genomic sequence
gi|383127584|gb|AFG44446.1| Pinus taeda anonymous locus 2_3502_02 genomic sequence
gi|383127586|gb|AFG44447.1| Pinus taeda anonymous locus 2_3502_02 genomic sequence
Length = 90
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 56/97 (57%), Gaps = 16/97 (16%)
Query: 150 RRGGYGRHSPYGRSPSPAYRRRP---SPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSP 206
RRG YG RS SP Y RR SPDYGR SP Y R +R SPD+GR SP
Sbjct: 4 RRGSYGSRD---RSASPLYSRRALRDSPDYGRAPSPIYARR-----PERSSPDYGRAASP 55
Query: 207 VPVYDRRR---SPDYGRNRSPNFGRYRSRSPVRRSRT 240
+ Y RR SPDYGR SP RYRSRSP+ RSR+
Sbjct: 56 I--YARRPQRDSPDYGRVVSPVHERYRSRSPLMRSRS 90
>gi|410915935|ref|XP_003971442.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Takifugu rubripes]
Length = 637
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 291 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNMVTVEWADP---MEDPDPEVMAK---VKVL 344
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F YGN+ V+ +++AF+ FE ++ A KALE + +L
Sbjct: 345 FVRNLANSVTEEI-LEKSFSEYGNLERVKKLKDYAFIHFEERDGAVKALEEMNGKELEGE 403
Query: 129 VISVEYALKDDSERDDR 145
I + +A D +R +R
Sbjct: 404 PIEIVFAKPPDQKRKER 420
>gi|413915907|gb|AFW55839.1| hypothetical protein ZEAMMB73_482663 [Zea mays]
gi|413915908|gb|AFW55840.1| hypothetical protein ZEAMMB73_482663 [Zea mays]
Length = 492
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 30/195 (15%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+ F+ + + A A + + F D+ +V WA + G A+ K+L
Sbjct: 215 GYGFIEYYNQACAEYAKKMMSTPEFKLDKNAPNVSWADTKNGGES------ASTAQVKSL 268
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTD 121
+V N T+E+ +K+ FE G V V I + FV F+ + A KALE T+
Sbjct: 269 YVKNLPKAVTQEQ-LKKLFEHLGEVTKVVIPPAKAGHENRYGFVHFKERSMAMKALEDTE 327
Query: 122 RSKLVDRVISVEYALKDDSERDDRYDSPRRG---------GY---GRHSPYGRSPSPAYR 169
R +L +++ A K +++ D +P+ G GY G ++P G + A
Sbjct: 328 RFELDGQLLDCSLA-KPLADKKDDTSAPKGGPLLPSYTPVGYGLMGAYNPLGNGLAVAGA 386
Query: 170 RRPSPDYGRGRSPAY 184
P YG G + AY
Sbjct: 387 YNP---YGNGLAGAY 398
>gi|432109353|gb|ELK33614.1| RNA-binding protein 47 [Myotis davidii]
Length = 733
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 68/141 (48%), Gaps = 9/141 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 338 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 391
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + ++L
Sbjct: 392 YVRNLM-IETTEDTIKKVFGQFNPGCVERVKKIRDYAFVHFASREDAVHAMNHLNGTELE 450
Query: 127 DRVISVEYALKDDSERDDRYD 147
+ V A D E+ RY
Sbjct: 451 GSCLEVTLAKPVDKEQYSRYQ 471
>gi|198414940|ref|XP_002124726.1| PREDICTED: hypothetical protein, partial [Ciona intestinalis]
Length = 1397
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 37/76 (48%), Gaps = 13/76 (17%)
Query: 154 YGRHSP---YGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVY 210
Y R+S YG P P Y +P PDYG G P Y+ NGP PD+G P+P Y
Sbjct: 947 YKRNSASPIYGNGPPPNYGNKPLPDYGNGPPPKYE--NGP------PPDYG--NKPLPDY 996
Query: 211 DRRRSPDYGRNRSPNF 226
PDYG P++
Sbjct: 997 GNGPPPDYGNGPPPDY 1012
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 32/74 (43%), Gaps = 12/74 (16%)
Query: 154 YGRHSP--YGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYD 211
YG P Y P P Y +P PDYG G P Y NGP PD+ P P Y+
Sbjct: 972 YGNGPPPKYENGPPPDYGNKPLPDYGNGPPPDYG--NGP------PPDY--ENGPPPKYE 1021
Query: 212 RRRSPDYGRNRSPN 225
PDYG P+
Sbjct: 1022 NGPPPDYGNKPPPD 1035
Score = 40.8 bits (94), Expect = 0.55, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 169 RRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 227
R SP YG G P Y N P+ D P P P Y + PDYG P++G
Sbjct: 949 RNSASPIYGNGPPPNYG--NKPLPDYGNGPPPKYENGPPPDYGNKPLPDYGNGPPPDYG 1005
>gi|126002576|ref|XP_001382208.1| GA19037 [Drosophila pseudoobscura pseudoobscura]
gi|195146834|ref|XP_002014389.1| GL18979 [Drosophila persimilis]
gi|54640338|gb|EAL29321.1| GA19037 [Drosophila pseudoobscura pseudoobscura]
gi|194106342|gb|EDW28385.1| GL18979 [Drosophila persimilis]
Length = 196
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 89/200 (44%), Gaps = 33/200 (16%)
Query: 58 SMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN---FAFVQFETQEEAT 114
SM +QR T+ ++V N + ++ D++ F YG + V I N FAFV+FE +++A
Sbjct: 3 SMTDQRGTR-VYVGNLTD-KVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAE 60
Query: 115 KALESTDRSKLVDRVISVEYALK--DDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRR-- 170
KA + + S+L+ + VE + S R + RRG +GRHS S + +R+
Sbjct: 61 KACDILNGSELLGSQLRVEISKGRPRQSRRGGSSERGRRGDFGRHSI--NSSNGGFRQVR 118
Query: 171 --------RPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPV-------PVYDRRRS 215
Y GRS G Y R S +G R V Y S
Sbjct: 119 GSSGSSSRHAERGYSSGRS-------GAGYSGRDSGSNGFSRRDVYGGGRDGSRYSSGNS 171
Query: 216 PDYGRNRSPNFGRYRSRSPV 235
YGR+ R+RSRSPV
Sbjct: 172 TSYGRSGGQGGCRFRSRSPV 191
>gi|47220951|emb|CAG03484.1| unnamed protein product [Tetraodon nigroviridis]
Length = 603
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 26/139 (18%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA----RGERGRHRDGSKSMANQRP 64
GFAFV FE +DA DA+ L+N + R + +E++ RGE GR G P
Sbjct: 422 GFAFVEFETVKDATDALESLNNTDI--EGRSIRLEFSQNSGRGEGGRGNSG--------P 471
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKA 116
TKTLFV T ++ +K FE + RI + F FV F+ + + A
Sbjct: 472 TKTLFVKGLSE-DTTDQSLKEAFEA---AVAARIVTDKETGSSKGFGFVDFDNEADCKAA 527
Query: 117 LESTDRSKLVDRVISVEYA 135
E+ D ++ ++++YA
Sbjct: 528 KEAMDDGEIDGSKVTLDYA 546
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 20/136 (14%)
Query: 9 GFAFVYFEDDRDAADAI---RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPT 65
G A++ F+ + +A + +G D R + V++ GE+ + G+K A
Sbjct: 332 GIAYIEFKTEAEAEKMLEEAQGAD-----VQGRSIMVDFV-GEKSQK--GAKVPAASGAA 383
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALES 119
V+N E ++ FE +RI + FAFV+FET ++AT ALES
Sbjct: 384 SKTLVVNNLAFSATEEVLQSTFE---KATSIRIPQRDGRPKGFAFVEFETVKDATDALES 440
Query: 120 TDRSKLVDRVISVEYA 135
+ + + R I +E++
Sbjct: 441 LNNTDIEGRSIRLEFS 456
>gi|147901982|ref|NP_001087983.1| RNA binding motif protein 4B [Xenopus laevis]
gi|52139141|gb|AAH82645.1| LOC494668 protein [Xenopus laevis]
Length = 336
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 90/218 (41%), Gaps = 32/218 (14%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
+ FV+ +D + A +A+R L++ + ++VE +RG+ + L
Sbjct: 36 NYGFVHMDDKKAADEAVRNLNH--YKLHNVSINVEHSRGK-------------PNASTKL 80
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
V N T E +++ FE YG VL I +++AFV E EA A+++ D ++ +
Sbjct: 81 HVSNLSSSCTSE-ELRAKFEEYGAVLECDIVKDYAFVHMEISAEALDAIKNLDNTEFKGK 139
Query: 129 VISVEYALK------DDSERDDRYDSPRRGGYGRHSPYGRSP-----SPAYRRRPSPD-Y 176
+ V+ + ER Y + G + + P + P Y PD Y
Sbjct: 140 RMHVQLSTSRLRVTPGMGERTRCYRCGKEGHWSKECPLDQMAKELEQEPGYPPESFPDPY 199
Query: 177 GRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRR 214
G RS AY Y QR D G S V Y R R
Sbjct: 200 GPMRSAAYRT----AYAQRVFYDEGERFSIVDYYQRYR 233
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFV N P T+ ++K FE +G V I +N+ FV + ++ A +A+ + + KL +
Sbjct: 4 LFVGNLPPEATQP-ELKSLFEQFGRVTECDIIKNYGFVHMDDKKAADEAVRNLNHYKLHN 62
Query: 128 RVISVEYA 135
I+VE++
Sbjct: 63 VSINVEHS 70
>gi|310799153|gb|EFQ34046.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 1112
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 15/133 (11%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
F++V F D +A A++ + G + +LS ++ R + R+G+ + L
Sbjct: 714 FSYVTFRDRSASAKAVQKHGTVLDG--KFKLSAMYSDPTRAKKREGAIEEGRE-----LH 766
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDR 122
V N DP+ E D+++ F YG V + I RN A+V+ ET+E+A A+ D+
Sbjct: 767 VTNLDPLAV-EDDVEKAFSKYGTVKRISILRNKAGKGHGAAYVEMETKEQAQTAVSELDK 825
Query: 123 SKLVDRVISVEYA 135
+KL +++V+ +
Sbjct: 826 AKLRSSIMTVQIS 838
>gi|387219571|gb|AFJ69494.1| splicing factor, arginine/serine-rich 1/9 [Nannochloropsis gaditana
CCMP526]
Length = 277
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
+AFV FED RDA DA+ DN + +D R+ VE A E R RD + T
Sbjct: 43 YAFVAFEDPRDAKDAVHYRDN--YDFDGGRIRVELAN-ETPRRRDDRGFGGGRNRTDFRL 99
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNF-AFVQFETQEEATKALESTDRSKL 125
++ P RT +D+K +F+P G+VL+ + RN V+F T+E+ A D S
Sbjct: 100 EVSDLPDRTSWQDLKDYFKPVGDVLYADVSRNGEGVVEFATKEDMFAAKRKLDGSTF 156
>gi|388518723|gb|AFK47423.1| unknown [Medicago truncatula]
Length = 340
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 76/168 (45%), Gaps = 24/168 (14%)
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEA 113
+ P L+V P R +R++++HF G V+ V + R F FV +T EEA
Sbjct: 41 ENPGNNLYVTGLSP-RITKRELEKHFSAKGKVVDVHLVVDPWTRESRGFGFVTMDTLEEA 99
Query: 114 TKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPS 173
+ ++ +RS L RVI+VE A + G + GR SP+Y R S
Sbjct: 100 DRCVKYLNRSVLEGRVITVEKARRRRGRTPTPGKY-----LGLKTIRGRRRSPSYSPRRS 154
Query: 174 PDYGRGRSPAYDRYNGPVY--DQRRS----PDHGRHRSPVPVYDRRRS 215
P Y SP YN Y D RS PD+ R RS P Y RRR+
Sbjct: 155 PSY----SPYRRSYNRSPYSSDHSRSRSYSPDYRRRRSYSPDYRRRRA 198
>gi|47086959|ref|NP_998482.1| uncharacterized protein LOC406277 [Danio rerio]
gi|45595715|gb|AAH67153.1| Zgc:56141 [Danio rerio]
Length = 341
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 17/143 (11%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
FAFV+ +D + A AI+ L + ++VE +RG+ NQ P K L
Sbjct: 37 FAFVHMDDRKSATKAIKNLHL--YKLHGTPINVEASRGK------------NQGPVK-LH 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N + + + +++ FE YG V I +NFAFV +EA A++ D ++ +
Sbjct: 82 VANVE--KGTDDELRALFEDYGTVAECAIIKNFAFVHMNNSDEAMDAIKGLDNTEFQGKR 139
Query: 130 ISVEYALKDDSERDDRYDSPRRG 152
I V+ + +D Y P G
Sbjct: 140 IHVQISKSRPRGEEDDYGHPDAG 162
Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ N P + ++K F YG V I +NFAFV + ++ ATKA+++ KL
Sbjct: 4 IFIGNL-PQQAEVDELKSLFSQYGTVTECAIIKNFAFVHMDDRKSATKAIKNLHLYKLHG 62
Query: 128 RVISVE 133
I+VE
Sbjct: 63 TPINVE 68
>gi|324505135|gb|ADY42212.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 609
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ F D + A+DA R + L V+WA E+ D ++MA K L
Sbjct: 313 GFCFLDFCDHKSASDAKRKIHAGKLRAWNLDLVVDWA--EQQEEPD-EETMAK---VKVL 366
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
+V N T E+ +K F +G V HV+ +++AF+ F +E A KA+E+ + + L
Sbjct: 367 YVRNLKEAVTEEQ-LKEMFSAHGEVDHVKKIKDYAFIHFNEREPAVKAMEALNGTVLEGV 425
Query: 129 VISVEYA 135
I + A
Sbjct: 426 PIEISLA 432
>gi|299473651|emb|CBN78045.1| poly(A) binding protein [Ectocarpus siliculosus]
Length = 688
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 61/145 (42%), Gaps = 19/145 (13%)
Query: 9 GFAFVYFEDDRDAADAIRGLDN--IPFGYDRRRLSV-------EWARGERGRHRDGSKSM 59
GF FV FE+ A AI L+N +P G L E AR + +H
Sbjct: 274 GFGFVNFEEHESAVKAIEALNNAEMPDGEGTTTLYCARAQKKSERARELQSKHDQVKMER 333
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---------RNFAFVQFETQ 110
N+ ++V N D T E ++ F PYG + R+ + F FV F
Sbjct: 334 MNKFQGVNVYVKNLDEGVT-EDAMREAFAPYGTITSARVMVDNSNNNQSKGFGFVCFSAP 392
Query: 111 EEATKALESTDRSKLVDRVISVEYA 135
EEATKA+ + L+++ I V A
Sbjct: 393 EEATKAITEMNGKMLLNKPIYVALA 417
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 87/223 (39%), Gaps = 28/223 (12%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER-----GRHRDGSKSMANQRP 64
F FV FE+ DAA A+ GL+ F + + ER GR K A++ P
Sbjct: 256 FGFVNFENPDDAAKAVEGLNGKKFDDKEWYVGKAQKKSEREQELKGRFEQSIKEAADKYP 315
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVR-------IRRNFAFVQFETQEEATKAL 117
L++ N D + E+ +K F YG + + I R FV F T EEAT+AL
Sbjct: 316 GLNLYLKNLDDTISDEK-LKEMFADYGTITSCKVMRDPTGISRGSGFVAFSTPEEATRAL 374
Query: 118 ESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPD-- 175
+ + + V A + + ER R + + + P +PS A R P
Sbjct: 375 GEMNGKMFAGKPLYVALAQRKE-ERRARL----QAQFSQMRPVAITPSVAPRMPLYPPGA 429
Query: 176 --------YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVY 210
YG+G G Y Q+ P P+P +
Sbjct: 430 PGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSF 472
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 16/145 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+ FV F+++ A +AI L+ + D++ + R ++ R SK+ N +
Sbjct: 164 GYGFVQFDNEEAAQNAIDKLNGMLIN-DKQVYVGHFLR-KQDRENALSKTKFN-----NV 216
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTD 121
+V N T + ++ +F YG + I R+ F FV FE ++A KA+E +
Sbjct: 217 YVKNLSE-STTDEELMINFGEYGTITSALIMRDADGKSRCFGFVNFENPDDAAKAVEGLN 275
Query: 122 RSKLVDRVISVEYALKDDSERDDRY 146
K D+ V A K SER+
Sbjct: 276 GKKFDDKEWYVGKAQK-KSEREQEL 299
>gi|346468607|gb|AEO34148.1| hypothetical protein [Amblyomma maculatum]
Length = 338
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 15/135 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG-----RHRDGSKSMANQR 63
GF FV F+D RDA DA+ L+ DR +SVE ARG R R R S+S +R
Sbjct: 37 GFGFVEFDDHRDADDAVYELNGKELLGDR--VSVELARGIRRGADYYRSRAASRSPPRRR 94
Query: 64 ---PTKTLFVINFDPIRTRE--RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATK 115
PT+T + + + + +R +D+K + G V + R+RRN V+F T +
Sbjct: 95 YGPPTRTEYQLTVENLSSRVSWQDLKDYMRQAGEVTYADAHRLRRNEGVVEFATYSDMKN 154
Query: 116 ALESTDRSKLVDRVI 130
ALE D + L R I
Sbjct: 155 ALEKLDNTDLSGRRI 169
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
RERD++R F+ +G + + I+ F FV+F+ +A A+ + +L+ +SVE A
Sbjct: 14 VRERDLERFFKGFGRIREISIKNGFGFVEFDDHRDADDAVYELNGKELLGDRVSVELA 71
>gi|324502274|gb|ADY41001.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324504680|gb|ADY42019.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324508493|gb|ADY43584.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324508971|gb|ADY43783.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 621
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ F D + A+DA R + L V+WA E+ D ++MA K L
Sbjct: 325 GFCFLDFCDHKSASDAKRKIHAGKLRAWNLDLVVDWA--EQQEEPD-EETMAK---VKVL 378
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
+V N T E+ +K F +G V HV+ +++AF+ F +E A KA+E+ + + L
Sbjct: 379 YVRNLKEAVTEEQ-LKEMFSAHGEVDHVKKIKDYAFIHFNEREPAVKAMEALNGTVLEGV 437
Query: 129 VISVEYA 135
I + A
Sbjct: 438 PIEISLA 444
>gi|324511732|gb|ADY44878.1| Heterogeneous nuclear ribonucleoprotein Q, partial [Ascaris suum]
Length = 561
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ F D + A+DA R + L V+WA E+ D ++MA K L
Sbjct: 325 GFCFLDFCDHKSASDAKRKIHAGKLRAWNLDLVVDWA--EQQEEPD-EETMAK---VKVL 378
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
+V N T E+ +K F +G V HV+ +++AF+ F +E A KA+E+ + + L
Sbjct: 379 YVRNLKEAVTEEQ-LKEMFSAHGEVDHVKKIKDYAFIHFNEREPAVKAMEALNGTVLEGV 437
Query: 129 VISVEYA 135
I + A
Sbjct: 438 PIEISLA 444
>gi|62511030|sp|Q6IQ97.1|RBM41_DANRE RecName: Full=RNA-binding protein 4.1; AltName: Full=RNA-binding
motif protein 4.1
gi|47940417|gb|AAH71513.1| RNA binding motif protein 4.1 [Danio rerio]
gi|160774000|gb|AAI55176.1| RNA binding motif protein 4.1 [Danio rerio]
Length = 419
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 105/254 (41%), Gaps = 41/254 (16%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
F FV+ + +A +AI+ L + + + ++VE ++G+ + + L
Sbjct: 37 FGFVHMDSKSEADEAIQNLHH--YMLNGMAMNVEMSKGK-------------PKTSTKLH 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N T + +++ FE YG V+ I +++AFV E E+A +A+ D + ++
Sbjct: 82 VGNISSSCTNQ-ELRAKFEEYGPVVECDIVKDYAFVHMERVEDAMEAISGLDNTAFQGKL 140
Query: 130 ISVEYALK------DDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSP--------D 175
+SV+ + ER Y + G + + P ++ S YR PS D
Sbjct: 141 MSVKLSTSRLRTAPGMGERTGCYRCGQEGHWSKECPLDQNGS--YREGPSSEGFGPVRFD 198
Query: 176 YGRGRSPAYDR-YNG-PVYDQRRSPDHGRHRS---PVPVYDR----RRSPDYGRNRSPNF 226
G R + R ++G P Y +P HG R VP Y R + YG
Sbjct: 199 SGGDRGRGFHRGFSGEPAYAGSFAPSHGFTRGAGYAVPGYGRGAGFESAMGYGMPAGYGV 258
Query: 227 GRYRSRSPVRRSRT 240
G S +PV S
Sbjct: 259 GADNSMAPVYGSEA 272
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+FV N P T E +I+ F YG + I +NF FV +++ EA +A+++ L
Sbjct: 4 IFVGNLSPNTTAE-EIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYMLNG 62
Query: 128 RVISVE 133
++VE
Sbjct: 63 MAMNVE 68
>gi|28839776|gb|AAH47836.1| Zgc:56141 protein [Danio rerio]
gi|197247072|gb|AAI65109.1| Zgc:56141 protein [Danio rerio]
Length = 249
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 18/159 (11%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
FAFV+ +D + A AI+ L + ++VE +RG+ NQ P K L
Sbjct: 109 FAFVHMDDRKSATKAIKNLH--LYKLHGTPINVEASRGK------------NQGPVK-LH 153
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N + + + +++ FE YG V I +NFAFV +EA A++ D ++ +
Sbjct: 154 VANVE--KGTDDELRALFEDYGTVAECAIIKNFAFVHMNNSDEAMDAIKGLDNTEFQGKR 211
Query: 130 ISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAY 168
I V+ + +D Y P GY H P + P+
Sbjct: 212 IHVQISKSRPRGEEDDYGHP-DAGYWPHPPLDPALQPSL 249
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
L++ N P + ++K F YG V I +NFAFV + ++ ATKA+++ KL
Sbjct: 75 CLYIGNL-PQQAEVDELKSLFSQYGTVTECAIIKNFAFVHMDDRKSATKAIKNLHLYKLH 133
Query: 127 DRVISVE 133
I+VE
Sbjct: 134 GTPINVE 140
>gi|313227405|emb|CBY22552.1| unnamed protein product [Oikopleura dioica]
Length = 318
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 23/135 (17%)
Query: 75 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134
P R R RDI F+ YG ++ + I+ +AFV+FE + +A A++ D KL + +E
Sbjct: 14 PERVRSRDIDDFFKGYGRIVDISIKTKYAFVEFEDERDAADAVKDLDDQKLNGSRVRLEV 73
Query: 135 ALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRR-RPSPDYGRGRS------------ 181
+ D+Y +R G R+ Y +S SP RR R G+GRS
Sbjct: 74 S----KGCKDKYRDFQRTGRVRYRSYSKSVSPGRRRHRSRSPVGKGRSRSRSPARGSDRR 129
Query: 182 ------PAYDRYNGP 190
PAY +Y P
Sbjct: 130 ETFYSKPAYKKYGAP 144
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 56/186 (30%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSV---------EWARGERGRHRDGSKSMA 60
+AFV FED+RDAADA++ LD+ R RL V ++ R R R+R SKS++
Sbjct: 41 YAFVEFEDERDAADAVKDLDDQKLNGSRVRLEVSKGCKDKYRDFQRTGRVRYRSYSKSVS 100
Query: 61 NQR----------------------------------------PTKTLFVINFDPIRTR- 79
R P KT + + D + +R
Sbjct: 101 PGRRRHRSRSPVGKGRSRSRSPARGSDRRETFYSKPAYKKYGAPEKTRWTVEVDNLSSRC 160
Query: 80 -ERDIKRHFEPYGNVLH-----VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 133
+D+K G V + I RN V +E +++A +A+E D + R + +
Sbjct: 161 SWQDLKDFMRKAGEVTYGDAHGSDIGRNRGVVCYEREDDAKRAIEELDGREFNGRDVKLA 220
Query: 134 YALKDD 139
+ ++++
Sbjct: 221 FKVREE 226
>gi|242084538|ref|XP_002442694.1| hypothetical protein SORBIDRAFT_08g001290 [Sorghum bicolor]
gi|241943387|gb|EES16532.1| hypothetical protein SORBIDRAFT_08g001290 [Sorghum bicolor]
Length = 491
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 84/195 (43%), Gaps = 31/195 (15%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+ F+ + + A A + + F D+ +V WA + G G + +Q K+L
Sbjct: 216 GYGFIEYYNQACAEYAKKKMSTPEFKLDKNAPNVSWADTKNG----GESASTSQ--VKSL 269
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTD 121
++ N T+E+ +KR FE G V V I + FV F+ + A KAL+ T+
Sbjct: 270 YIKNLPKTVTQEQ-LKRLFEHLGEVTKVVIPPAKAGHENRYGFVHFKERSMAMKALKDTE 328
Query: 122 RSKLVDRVISVEYALKDDSERDDRYDSPRRG---------GY---GRHSPYGRSPSPAYR 169
R +L ++ A ++DD P+ G GY G ++P G + AY
Sbjct: 329 RYELDGHLLDCSLAKPLAEKKDDTTSVPKGGPLLPSYTPLGYGLMGAYNPLGNGLAGAYN 388
Query: 170 RRPSPDYGRGRSPAY 184
+G G + AY
Sbjct: 389 -----PHGNGVAGAY 398
>gi|389584444|dbj|GAB67176.1| poly(A)-binding protein [Plasmodium cynomolgi strain B]
Length = 384
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 16/179 (8%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+ FV + D A AI ++ + Y +RL V ++ K P T+
Sbjct: 151 GYGFVVYTDPHSATMAISNMNKVEV-YAGKRLKVLLKSNSNENNKKKIK------PGCTI 203
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTD 121
FV + P ++D+KRHF YGN+L I+R + F+ FE Q+ A A+ +
Sbjct: 204 FVF-YLPNDWSDKDLKRHFSHYGNILGATIKRETNGKSRGYGFINFENQQSAINAVAGMN 262
Query: 122 RSKLVDRVISVEYALKDDSERDDRY-DSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRG 179
++ + V ++ +Y + R G SP P A SP++G G
Sbjct: 263 GFNAGNKYLKVSIKKGEEQYLAPQYLNIDRMGNNSYGSPPPPPPPMACHGNDSPNFGNG 321
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN---FAFVQFETQEEATKALESTD 121
+ ++FV NF P E DIK++F +G + +V I ++ +A++QF E KA+E +
Sbjct: 9 SNSIFVYNF-PSEWMENDIKKNFMIFGTINNVIIDKDINIYAYIQFHDGEACQKAMEVMN 67
Query: 122 RSKLVDRVISV 132
++ +V+ V
Sbjct: 68 GKEVSGKVLKV 78
>gi|344295811|ref|XP_003419604.1| PREDICTED: RNA-binding protein 4B-like [Loxodonta africana]
Length = 359
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 23/190 (12%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
+ FV+ ED A DAIR L + G + + S + + L
Sbjct: 37 YGFVHIEDKTAAEDAIRNLHHYKL---------------HGVNINVEASKNKSKASTKLH 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N P T + +++ FE YG V+ I +++AFV E E+A +A+ D ++ +
Sbjct: 82 VGNISPTCTNQ-ELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKR 140
Query: 130 ISVEYALK------DDSERDDRYDSPRRGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSP 182
+ V+ + ++ Y + G + + P R+ A + + S YG R+P
Sbjct: 141 MHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRTGRVADFAEQYSDQYGAVRAP 200
Query: 183 AYDRYNGPVY 192
Y VY
Sbjct: 201 YSTAYGESVY 210
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 128 RVISVE 133
I+VE
Sbjct: 63 VNINVE 68
>gi|328874817|gb|EGG23182.1| hypothetical protein DFA_05314 [Dictyostelium fasciculatum]
Length = 527
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 56 SKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATK 115
+K +P+ +LF++NF +T + I+ +P+G + + +R+NF FV+F+ E++TK
Sbjct: 307 TKQNGAMKPSTSLFLVNFGS-KTNQSLIETWCKPFGRINRIDMRKNFCFVEFDNIEQSTK 365
Query: 116 ALESTDRSKLVD--RVISVEYAL 136
A+E+ + ++VE+A+
Sbjct: 366 AMEALHGKDVASDGNKLTVEFAI 388
>gi|392579716|gb|EIW72843.1| hypothetical protein TREMEDRAFT_25743, partial [Tremella
mesenterica DSM 1558]
Length = 749
Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 26/169 (15%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA-RGERGRHRDGSKSMANQRPTKT 67
G+ FV F+ A+ A+ GLD F D ++L V++A RG ++ + T
Sbjct: 561 GYGFVGFKTKEAASKALPGLDG--FEVDGKKLEVKFAQRGVEDVQKEEKGGEMKGKSKGT 618
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------------RRNFAFVQFETQEEAT 114
++ P ++++K F YG V +R+ R FAF++F T EA
Sbjct: 619 KLLVKNLPFEATKKEVKELFSAYGQVKSLRVPKKPTLSASGAHSSRGFAFLEFTTHVEAQ 678
Query: 115 KALESTDRSKLVDRVISVEYALKDD----------SERDDRYDSPRRGG 153
+A+++ + L+ R + +++A +DD + RD R+ + GG
Sbjct: 679 RAMDALKHTHLLGRHLVIQWAKEDDEVDVSGLREKASRDARFLTDDGGG 727
>gi|167517425|ref|XP_001743053.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778152|gb|EDQ91767.1| predicted protein [Monosiga brevicollis MX1]
Length = 1117
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 70/146 (47%), Gaps = 22/146 (15%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG------RHRDGSKSMANQ 62
GF FV ++ +DA AI+ L G + ++E ER R R G K A
Sbjct: 949 GFGFVEYKSRQDAVRAIKML----HGSSLQEHTLELKMSERTGAPLTKRERQGKKMKAK- 1003
Query: 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEAT 114
+ L V N +++++ F P+GN++ VR+ R FAF++F T++EA
Sbjct: 1004 --SNKLVVRNI-AFEATPKEVQQLFSPHGNIVSVRLPRKQYDGTHRGFAFIEFSTKQEAR 1060
Query: 115 KALESTDRSKLVDRVISVEYALKDDS 140
A + + L R +++E+A D+S
Sbjct: 1061 DAFSALSGTHLYGRRLAMEFAEDDES 1086
>gi|156101397|ref|XP_001616392.1| poly(A)-binding protein [Plasmodium vivax Sal-1]
gi|148805266|gb|EDL46665.1| poly(A)-binding protein, putative [Plasmodium vivax]
Length = 392
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 16/179 (8%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+ FV + D AA AI ++ + Y +RL V + + SK +P T+
Sbjct: 159 GYGFVVYTDPHSAAMAISNMNKVEV-YTGKRLKVLL----KSSSNENSKKKI--KPGCTI 211
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTD 121
FV + P ++D+KRHF YGN+L I+R + F+ FE Q+ A A+ +
Sbjct: 212 FVF-YLPNDWSDKDLKRHFSHYGNILGATIKRETNGKSRGYGFINFENQQSAINAVAGMN 270
Query: 122 RSKLVDRVISVEYALKDDSERDDRY-DSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRG 179
++ + V ++ +Y + R G SP P SP++G G
Sbjct: 271 GFNAGNKYLKVSIKKGEEQYLAPQYLNIDRMGNNSYGSPPPPPPPMTCHGNDSPNFGNG 329
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN---FAFVQFETQEEATKALESTDRS 123
++FV NF P E DIK++F +G + +V I ++ +A++QF E KA+E +
Sbjct: 19 SIFVYNF-PSEWMENDIKKNFMIFGTINNVIIDKDINMYAYIQFHDGEACQKAMEVMNGK 77
Query: 124 KLVDRVISV 132
++ +V+ V
Sbjct: 78 EVSGKVLKV 86
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 25/145 (17%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE-----------RGRHRDGSK 57
GF FV FE+ DAA A+ L+ F D + EW G+ + + K
Sbjct: 265 GFGFVNFENSDDAARAVDALNGKTF--DDK----EWFVGKAQKKSERETELKQKFEQSLK 318
Query: 58 SMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQ 110
A++ L+V N D T ++ ++ HF P+G + ++ R+ FV F T
Sbjct: 319 EAADKSQGSNLYVKNLDESVTDDK-LREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTP 377
Query: 111 EEATKALESTDRSKLVDRVISVEYA 135
EEAT+A+ + +V + + V A
Sbjct: 378 EEATRAITEMNGKMIVTKPLYVALA 402
>gi|390596289|gb|EIN05691.1| RNA-binding domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 779
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 12/139 (8%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA-RGERGRHRDGSKSMANQRPTKT 67
G+ FV F+D A ++ L D LSV+WA RG+ + + A R TK
Sbjct: 605 GYGFVGFKDKESAKKGMKSLQGTVV--DGHALSVKWAGRGQDEKEGKEGEGKAKARTTK- 661
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALEST 120
++ P ++DI+ F +G + VR+ R FAF+ F ++ EA A E+
Sbjct: 662 -MIVKNVPFEATKKDIRELFGAHGQLKSVRLPKKFDHRSRGFAFLDFVSRHEAENAYEAL 720
Query: 121 DRSKLVDRVISVEYALKDD 139
+ L+ R + +E+A ++D
Sbjct: 721 KHTHLLGRHLVLEWASEED 739
>gi|294460252|gb|ADE75708.1| unknown [Picea sitchensis]
Length = 396
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 16/139 (11%)
Query: 56 SKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQF 107
+ +MA R TK +FV P T E D +++FE +GN+ V + R F F+ +
Sbjct: 92 TSNMAGPR-TKKIFVGGLAPTVT-EDDFRKYFEQFGNITDVVVMYDHTTQRHRGFGFITY 149
Query: 108 ETQEEATKALESTDRSKLVDRVISVEYAL-KDDSERDDRYDSPRRGGYG---RHSPYGRS 163
++++ K L+ T +L ++ + V+ A+ KD S + R + R YG YG +
Sbjct: 150 DSEDAVDKVLQQTFH-QLKEKTVEVKRAIPKDMSPGNTRGSAGRGASYGAPYMQGGYGPT 208
Query: 164 PSPAYRRRPSPDYGRGRSP 182
P AY RP P G G P
Sbjct: 209 PVGAYGARP-PIAGTGYPP 226
>gi|294873439|ref|XP_002766628.1| CUG triplet repeat RNA-binding protein, putative [Perkinsus marinus
ATCC 50983]
gi|239867660|gb|EEQ99345.1| CUG triplet repeat RNA-binding protein, putative [Perkinsus marinus
ATCC 50983]
Length = 372
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 85/203 (41%), Gaps = 22/203 (10%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G AFV F D + +AI L+ R L+V +A+GE R ++ + L
Sbjct: 26 GLAFVRFRDLAEGQNAIAALNGTTLPESARPLTVIYAQGEAERLGLTKETPGMRSEDTKL 85
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKL 125
+V P T ++++ FEP+G V V + +AFV+F +++A +A+ +
Sbjct: 86 YVAGLGP-STEAVELRKIFEPFGRVTEVHVPGPHALYAFVRFAEEKDAMRAISDVNGRVQ 144
Query: 126 VD---RVISVEYALKDDSERDDR-----------YDSPRRGGYGRHSPYGRSPSPAYRRR 171
V+ R++ V+ A S R Y SP GY H+P S P +
Sbjct: 145 VEGSQRMLEVKVADPSSSRGPTRRPSGSLPPVSSYGSPAGNGY-DHTP---SVQPRFVNG 200
Query: 172 PSPDYGRGRSPAYDRYNGPVYDQ 194
S YG+ +P G Q
Sbjct: 201 MSQGYGQASTPLNSTMAGDTQGQ 223
>gi|367008356|ref|XP_003678678.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
gi|359746335|emb|CCE89467.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
Length = 588
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 17/148 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-- 66
GF FV +E+ DAA A+ L+ F + L V A+ + R ++ K R K
Sbjct: 264 GFGFVNYENHNDAAKAVEELNETDF--KGQTLHVGRAQKKHERLQELKKQYEAFRLEKLE 321
Query: 67 -----TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEAT 114
LFV N D ++ ++ F PYG + V++ R+ F FV F T EEAT
Sbjct: 322 KYQGVNLFVKNLDDT-IDDQKLEEEFAPYGTITSVKVMRSENGKSKGFGFVCFSTPEEAT 380
Query: 115 KALESTDRSKLVDRVISVEYALKDDSER 142
KA+ ++ + + + V A + D R
Sbjct: 381 KAITEKNQQIVAGKPLYVAIAQRKDVRR 408
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 13/136 (9%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF FV+FEDD A +AI ++ + ++ ++ +R D +K AN +
Sbjct: 171 GFGFVHFEDDEAAKEAIDAINGMLLNGQEVYVAQHVSKKDRQSKLDEAK--AN---FTNV 225
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTD 121
+V N P T + + + F G + + R F FV +E +A KA+E +
Sbjct: 226 YVKNIHP-DTGDEEFEEFFTKVGPITSAHLEKDNEGKLRGFGFVNYENHNDAAKAVEELN 284
Query: 122 RSKLVDRVISVEYALK 137
+ + + V A K
Sbjct: 285 ETDFKGQTLHVGRAQK 300
>gi|363754779|ref|XP_003647605.1| hypothetical protein Ecym_6416 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891242|gb|AET40788.1| hypothetical protein Ecym_6416 [Eremothecium cymbalariae
DBVPG#7215]
Length = 390
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 74/137 (54%), Gaps = 17/137 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR-HRDGSKSMANQRPTKT 67
GFA+V F+ ++ A+ GL + + R L V+ ++G GR ++ S++ P++
Sbjct: 177 GFAYVDFKS-QEQMLAVIGLSELQL--NGRNLLVKNSKGFTGRPDKNDLISLSKNPPSRI 233
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALES 119
LFV N T E +K+HF+ GN++ +R+ + FAFV F+ + T +L
Sbjct: 234 LFVGNLS-FNTTEELLKKHFQHCGNIVKIRMATFEDTGKCKGFAFVDFKDETGPTASL-- 290
Query: 120 TDRS--KLVDRVISVEY 134
TD+S K+ +R I +EY
Sbjct: 291 TDKSCRKIANRPIRMEY 307
>gi|430811249|emb|CCJ31265.1| unnamed protein product [Pneumocystis jirovecii]
Length = 878
Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 19/171 (11%)
Query: 72 NFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVIS 131
N + ++D+ R F PYG + + +++ + FVQF + EE A+ + + R +
Sbjct: 302 NLPTEKVTKKDVFRVFYPYGRLGQIALKQAYGFVQFFSSEECQNAINGEQGTMIRGRKMH 361
Query: 132 VEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYN-GP 190
+E + + ++ P + P RSP R SP GR RS + G
Sbjct: 362 LEVS------KPQKHRPPLSSDKKAYRPRSRSPDV---RDRSPVRGRNRSHGRGNHGYGS 412
Query: 191 VYDQRRSPDHGRHRSPVPVYDRRRSPD----YGRNRSPNF-GRYRSRSPVR 236
YD+ + +G P Y +RRSP + R+R ++ G YRS SP R
Sbjct: 413 PYDRDKKDRYG----PREEYGKRRSPPLSLRHPRDRDMDYPGDYRSISPDR 459
>gi|444315572|ref|XP_004178443.1| hypothetical protein TBLA_0B00810 [Tetrapisispora blattae CBS 6284]
gi|387511483|emb|CCH58924.1| hypothetical protein TBLA_0B00810 [Tetrapisispora blattae CBS 6284]
Length = 389
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 14/157 (8%)
Query: 5 LHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR-HRDGSKSMANQR 63
L GF ++ FE + I L + R+L ++ ++ GR +RD SM+
Sbjct: 163 LKIKGFCYMDFETEAQMESVI-SLSECQL--NGRKLLIKNSKNYEGRPNRDDLVSMSKNP 219
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P++ LFV N T E ++ HF+ G ++ +R + F+F+ F T+E ATK
Sbjct: 220 PSRILFVGNLSYDTTDEL-LRSHFQHCGEIVKIRTATFEDTGKCKGFSFIDFLTEESATK 278
Query: 116 ALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRG 152
AL+ K+ R I +EY +D S+R R P+ G
Sbjct: 279 ALKDKSCRKIAGRPIRMEYG-EDRSKRVVRSVRPKEG 314
>gi|403216743|emb|CCK71239.1| hypothetical protein KNAG_0G01810 [Kazachstania naganishii CBS
8797]
Length = 596
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 17/148 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT- 67
GF FV +ED DA A+ L+ F + L V A+ + R + K + R K
Sbjct: 269 GFGFVNYEDHNDAVKAVEELNGAEF--KDQELFVGRAQKKYERIQSLKKQYESTRLEKMA 326
Query: 68 ------LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEAT 114
LFV N D E+ ++ F P+GN+ V++ R F FV F + EEAT
Sbjct: 327 KYQGVNLFVKNLDDSIDDEK-LQEEFAPFGNITSVKVMRTENGKSKGFGFVCFSSPEEAT 385
Query: 115 KALESTDRSKLVDRVISVEYALKDDSER 142
KA+ ++ + + + V A + D R
Sbjct: 386 KAITEKNQQIVAGKPLYVAIAQRKDVRR 413
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 13/131 (9%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF FV+FE++ A +AI L+ + ++ R ER + +K+ +
Sbjct: 176 GFGFVHFEEESAANEAIDALNGMLLNGQEIYVAPHLTRKERDSQLEETKAHFT-----NV 230
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRR-------NFAFVQFETQEEATKALESTD 121
+V N D + T + + K F G V V + R F FV +E +A KA+E +
Sbjct: 231 YVKNID-LETTDEEFKEFFGKIGTVTSVALERGPDGKLKGFGFVNYEDHNDAVKAVEELN 289
Query: 122 RSKLVDRVISV 132
++ D+ + V
Sbjct: 290 GAEFKDQELFV 300
>gi|114052178|ref|NP_001039393.1| RNA-binding protein 4B [Bos taurus]
gi|86438058|gb|AAI12498.1| RNA binding motif protein 4B [Bos taurus]
gi|296471585|tpg|DAA13700.1| TPA: RNA binding motif protein 4B [Bos taurus]
Length = 359
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 23/190 (12%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
+ FV+ ED A DAIR L + G + + S + + L
Sbjct: 37 YGFVHIEDKTAAEDAIRNLHHYKL---------------HGVNINVEASKNKSKASTKLH 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N P T + +++ FE YG V+ I +++AFV E E+A +A+ D ++ +
Sbjct: 82 VGNISPTCTNQ-ELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKR 140
Query: 130 ISVEYALK------DDSERDDRYDSPRRGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSP 182
+ V+ + ++ Y + G + + P RS A + + + YG R+P
Sbjct: 141 MHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRSGRVADFTEQYNEQYGAVRTP 200
Query: 183 AYDRYNGPVY 192
Y VY
Sbjct: 201 YTMGYGESVY 210
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 128 RVISVE 133
I+VE
Sbjct: 63 VNINVE 68
>gi|339234953|ref|XP_003379031.1| RNA-binding protein 47 [Trichinella spiralis]
gi|316978381|gb|EFV61375.1| RNA-binding protein 47 [Trichinella spiralis]
Length = 567
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 78/180 (43%), Gaps = 14/180 (7%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAF+ +E R AA A R L ++V+WA ER + +MA K L
Sbjct: 208 GFAFIEYESHRSAAMARRKLAPNRLTLWGNEITVDWAEPERDVDEE---TMAQ---VKKL 261
Query: 69 FVINFDPIRTRE--RDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N T E R++ G V V+ R++AFV F +E+A + E+ + L
Sbjct: 262 YVRNLMMHTTEEHLREVVEAISGTGTVERVKKIRDYAFVHFSRREDAIRVQEALNGQDLD 321
Query: 127 DRVISVEYALKDD------SERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGR 180
V+ V+ A D + + + R G G HS + RS A + S G GR
Sbjct: 322 GSVVEVKLAKPPDRSIMRFVKNAQKISNSARLGDGLHSHHHRSLVAAAAQLYSVAMGTGR 381
>gi|45201218|ref|NP_986788.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|74691820|sp|Q74ZS6.1|PABP_ASHGO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|44986072|gb|AAS54612.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|374110037|gb|AEY98942.1| FAGR122Cp [Ashbya gossypii FDAG1]
Length = 585
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 17/149 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-- 66
GF FV FED AA A+ L+ + F ++L V A+ + R ++ K R K
Sbjct: 260 GFGFVNFEDHAAAAKAVDELNELEF--KGQKLYVGRAQKKYERLQELKKQYEAARLEKLA 317
Query: 67 -----TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEAT 114
LFV N D E+ +K F P+G + ++ R+ F FV F T EEAT
Sbjct: 318 KYQGVNLFVKNLDDSIDDEK-LKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEAT 376
Query: 115 KALESTDRSKLVDRVISVEYALKDDSERD 143
KA+ ++ + + + V A + + R+
Sbjct: 377 KAITEKNQQIVAGKPLYVAIAQRKEVRRN 405
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 13/121 (10%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF FV+FE++ DA DAI +D + +++ ++ +R + K+ +
Sbjct: 167 GFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFT-----NV 221
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTD 121
+V N D T + + + F YG + + R F FV FE A KA++ +
Sbjct: 222 YVKNIDQ-ETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELN 280
Query: 122 R 122
Sbjct: 281 E 281
Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 19/131 (14%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+A+V F D AI L+ + + W++ + + GS + +
Sbjct: 80 GYAYVNFHDHEAGPKAIEQLNYTLI--KGKPCRIMWSQRDPSLRKKGSGN---------I 128
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTD 121
++ N P + + F +GN+L ++ R F FV FE + +A A+E+ D
Sbjct: 129 YIKNLHP-AIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVD 187
Query: 122 RSKLVDRVISV 132
+ D+ + V
Sbjct: 188 GMLMNDQEVYV 198
>gi|427777527|gb|JAA54215.1| Putative alternative splicing factor srp55/b52/srp75 rrm
superfamily [Rhipicephalus pulchellus]
Length = 363
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 15/135 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER-----GRHRDGSKSMANQR 63
GF FV F+D RDA DA+ L+ D R+SVE ARG R R R S+S +R
Sbjct: 37 GFGFVEFDDHRDADDAVYELNGKELLGD--RVSVELARGIRRGADYYRSRAASRSPPRRR 94
Query: 64 ---PTKTLFVINFDPIRTRE--RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATK 115
PT+T + + + + +R +D+K + G V + R+RRN V+F T +
Sbjct: 95 YGPPTRTEYQLTVENLSSRVSWQDLKDYMRQAGEVTYADAHRLRRNEGVVEFATYSDMKN 154
Query: 116 ALESTDRSKLVDRVI 130
AL+ D + L R I
Sbjct: 155 ALDKLDNTDLSGRRI 169
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
RERD++R F+ +G + + I+ F FV+F+ +A A+ + +L+ +SVE A
Sbjct: 14 VRERDLERFFKGFGRIREISIKNGFGFVEFDDHRDADDAVYELNGKELLGDRVSVELA 71
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 25/145 (17%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG-----------ERGRHRDGSK 57
GF FV FE+ DAA A+ L+ F D + EW G R R+ K
Sbjct: 256 GFGFVNFENADDAARAVESLNGHKF--DDK----EWYVGRAQKKSERETELRVRYEQNLK 309
Query: 58 SMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQ 110
A++ + L+V N DP + E+ +K F P+G V ++ R+ FV F T
Sbjct: 310 EAADKFQSSNLYVKNLDPSISDEK-LKEIFSPFGTVTSCKVMRDPNGTSKGSGFVAFSTP 368
Query: 111 EEATKALESTDRSKLVDRVISVEYA 135
EEAT+A+ + + + V A
Sbjct: 369 EEATEAMSQLSGKMIESKPLYVAIA 393
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 21/132 (15%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIP-FGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
G+ +V F + +DAA AI+ L+ IP +G R + HRD S +
Sbjct: 78 GYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMY---------SHRDPS---VRRSGAGN 125
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALEST 120
+F+ N D + + F +GN++ ++ + + FVQ+ +E A KA+E
Sbjct: 126 IFIKNLDE-SIDHKALHDTFSVFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKL 184
Query: 121 DRSKLVDRVISV 132
+ L D+ + V
Sbjct: 185 NGMLLNDKQVYV 196
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+ FV + ++ A AI L+ + + + R ER S AN+ +
Sbjct: 165 GYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQER-------DSTANKTKFTNV 217
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTD 121
+V N T + D+K F YG + + ++ F FV FE ++A +A+ES +
Sbjct: 218 YVKNLAE-STTDDDLKNAFGEYGKITSAVVMKDGDGKSKGFGFVNFENADDAARAVESLN 276
Query: 122 RSKLVDR 128
K D+
Sbjct: 277 GHKFDDK 283
>gi|432091077|gb|ELK24289.1| RNA-binding protein 4 [Myotis davidii]
Length = 382
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 78/190 (41%), Gaps = 23/190 (12%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
+ FV+ ED A DAIR L + G + + S + + L
Sbjct: 37 YGFVHIEDKTAAEDAIRNLHHYKL---------------HGVNINVEASKNKSKASTKLH 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N P T ++++ FE YG V+ I +++AFV E E+A +A+ D ++ +
Sbjct: 82 VGNISPTCTN-KELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKR 140
Query: 130 ISVEYALK------DDSERDDRYDSPRRGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSP 182
+ V+ + ++ Y + G + + P RS A + + + YG R+P
Sbjct: 141 MHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRSGRVADFTEQYNEQYGAVRTP 200
Query: 183 AYDRYNGPVY 192
Y +Y
Sbjct: 201 YTMSYGDSLY 210
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRTLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 128 RVISVE 133
I+VE
Sbjct: 63 VNINVE 68
>gi|223944069|gb|ACN26118.1| unknown [Zea mays]
gi|413956219|gb|AFW88868.1| hypothetical protein ZEAMMB73_204329 [Zea mays]
Length = 315
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 83/182 (45%), Gaps = 40/182 (21%)
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEA 113
+ P L+V R +RD+++HF G V+ + R F FV ++A
Sbjct: 36 ENPGNNLYVTGLS-ARVTDRDLEKHFSTEGEVIDASVVYDPWTRESRGFGFVTMAAVKDA 94
Query: 114 TKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGY-GRHSPYGRSPSPAYRRRP 172
+ ++ DRS L RVI+VE A + R +P G Y G S GR S +Y
Sbjct: 95 DRCIKYLDRSVLQGRVITVEKAKR------RRGRTPTPGKYLGTKSSRGRRYSTSY---- 144
Query: 173 SPDYGRGRSPAYDRYNGPVYDQRRSPD----HGRHRSPVPVYDRRRS-PDYGRNR--SPN 225
SPD RGR Y R SPD HGR RS P YDRRRS YGR+ SP
Sbjct: 145 SPD-RRGR-----------YSSRYSPDRRDCHGRDRSYSP-YDRRRSYSPYGRDESYSPY 191
Query: 226 FG 227
+G
Sbjct: 192 YG 193
>gi|123504802|ref|XP_001328836.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121911784|gb|EAY16613.1| hypothetical protein TVAG_434500 [Trichomonas vaginalis G3]
Length = 280
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKAL 117
KTLF+ N PI E+ ++ FEPYG +L I R AFV+FE E+A A+
Sbjct: 12 KTLFIANL-PIEALEKHVREVFEPYGTILTAFIVNTRGTVRSRGIAFVEFEKHEQAEAAM 70
Query: 118 ESTDRSKLVDRVISVEYA 135
+T+ K + I V++A
Sbjct: 71 AATNGMKFWENQIRVQWA 88
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 13/139 (9%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG-----RHRDGSKSMANQR 63
GF FV FE+ DAA A+ L+ F + + ER ++ K A++
Sbjct: 260 GFGFVNFENADDAAKAVESLNGKTFDDKEWFVGRAQKKSEREMELKVQYEQSLKEAADKF 319
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKA 116
+ L+V N D + E+ +K F PYG V ++ R+ FV F T EEATKA
Sbjct: 320 QSSNLYVKNLDDSVSDEK-LKELFTPYGTVTSCKVMRDPNGMSRGSGFVAFSTPEEATKA 378
Query: 117 LESTDRSKLVDRVISVEYA 135
+ + ++ + V A
Sbjct: 379 MSEMSGKMIENKPLYVAVA 397
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 19/131 (14%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+ +V F +DAA AI+ L+ IP + + + V ++ HRD S + +
Sbjct: 82 GYGYVNFTSPQDAARAIQELNYIPL--NGKPVRVMYS------HRDPS---VRRSGAGNI 130
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTD 121
F+ N D + + F +GN++ ++ + + FVQ+ET+E A KA+ +
Sbjct: 131 FIKNLDK-SIDHKALHDTFSVFGNIISCKVAVDSSGQSKGYGFVQYETEESAQKAMGQLN 189
Query: 122 RSKLVDRVISV 132
L D+ + V
Sbjct: 190 GMLLNDKQVYV 200
>gi|422295771|gb|EKU23070.1| arginine serine-rich splicing factor [Nannochloropsis gaditana
CCMP526]
Length = 1161
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 18/139 (12%)
Query: 11 AFVYFEDDRDAADAIRGLDNIPF---GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
F++F+D +A A + LD PF R+ + +++ +S N +P ++
Sbjct: 413 GFLHFKDAAEAIRAKKELDRKPFVAGHLPRQVMKIQY------------QSRGNNKPCRS 460
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--FAFVQFETQEEATKALESTDRSKL 125
+ V N P+ RE D+ F +G V+ V I N AF+ ET E+A +A+ +
Sbjct: 461 IRVHNL-PVGVRETDLSELFGAFGRVMIVVINTNSNIAFLSLETVEQAEQAMARWHDQEW 519
Query: 126 VDRVISVEYALKDDSERDD 144
R + ++YAL++ ++D
Sbjct: 520 RGRHLFLDYALRETISKED 538
>gi|390348058|ref|XP_796831.2| PREDICTED: uncharacterized protein LOC592201 [Strongylocentrotus
purpuratus]
Length = 324
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 76/153 (49%), Gaps = 34/153 (22%)
Query: 62 QRPTKTLFVINFD-PIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEE 112
+ PT++ + F + T ERD++ +E YG + +V + R FAFV F +
Sbjct: 145 ENPTESSCLGVFGLSLYTTERDLRDVYEHYGTLTNVNVVYDHQTGRSRGFAFVMFANTGD 204
Query: 113 ATKALESTDRSKLVDRVISVEYAL-------------------KDDSERDDRYDSPRRGG 153
AT A EST+ +++ R I V++++ K D R +R PR G
Sbjct: 205 ATAARESTNGTEVDGRRIRVDFSITERAHTPTPGVYMGKPTSNKRDFNRGERGYHPR--G 262
Query: 154 YGRH-SP--YGRSPSPAYRRRPSPDYGRGRSPA 183
Y R SP Y RSPSP YRR PSP Y R RSP+
Sbjct: 263 YHRSPSPHYYRRSPSPYYRRTPSPHYYR-RSPS 294
>gi|168016185|ref|XP_001760630.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688327|gb|EDQ74705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1084
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 15/131 (11%)
Query: 25 IRGLDNIPFGYDRRRLSVEWARGERG----RHRDGSK------SMANQRPTKTLFVINFD 74
+ G N+ R R + WA E G R +DGSK + + +TL+V
Sbjct: 469 VSGATNLNTNPGRGRGAAGWA--EVGPPFNRSKDGSKLGPRAPGRSVEHAQRTLYVNCIP 526
Query: 75 PIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 132
P + D+ HFE +G V+ VRI + AF+QF T+EEA AL S D + + +R I +
Sbjct: 527 PNANQAEDLLMHFEKFGRVVDVRIPPHSDRAFIQFATREEAESALASPD-AVMGNRFIRL 585
Query: 133 EYALKDDSERD 143
+A +D D
Sbjct: 586 SWANRDSINSD 596
>gi|33146854|dbj|BAC79849.1| putative pre-mRNA splicing factor SF2 [Oryza sativa Japonica Group]
Length = 362
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN------Q 62
GFAFV FED RDA DAIRG D + +D RL VE A G RG + S
Sbjct: 112 GFAFVEFEDPRDAEDAIRGRDG--YNFDGNRLRVELAHGGRGNSSSFNNSGGGGRRGGVS 169
Query: 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALE 118
R T+ ++ P +D+K H G+V + + R V + ++ A+
Sbjct: 170 RHTEYRVLVTGLPSSASWQDLKDHMRNAGDVCYSEVYREGGGTIGIVDYTNYDDMKYAIR 229
Query: 119 STDRSKL 125
D S+
Sbjct: 230 KLDDSEF 236
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 17/171 (9%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGS---KSMANQRPT 65
GF FV FE+ +A A++ L++ G + +++ V A+ + R D + + +R T
Sbjct: 233 GFGFVSFENPDNAEQAVKELNDKELG-NGKKIYVGRAQKKAERLSDLKRKFEQLKMERMT 291
Query: 66 K----TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEA 113
+ L+V N D + ER ++R F PYG + ++ + F FV F + EEA
Sbjct: 292 RYQGVNLYVKNLDDVIDDER-LRREFAPYGTITSAKVMMDSTGARSKGFGFVCFSSPEEA 350
Query: 114 TKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSP 164
TKA+ + +V + + V A + + R + G P+G+ P
Sbjct: 351 TKAVTEMNGRIIVQKPLYVALAQRKEDRRAHLSSQFVQRFTGVRVPFGQMP 401
Score = 39.7 bits (91), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 13/124 (10%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+ FV+FE + A +AI ++ + + + R ER R G K+ R +
Sbjct: 140 GYGFVHFETEEAANEAINKVNGMLLNEKKVFVGKFVPRSERERMM-GDKA----RLFTNV 194
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTD 121
+V NF + +K FE YG + R+ R F FV FE + A +A++ +
Sbjct: 195 YVKNFGE-ELDDGKLKEMFEVYGKITSARVMTDQTGKSRGFGFVSFENPDNAEQAVKELN 253
Query: 122 RSKL 125
+L
Sbjct: 254 DKEL 257
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 21/138 (15%)
Query: 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFG-YDRRRLSVEWARGERGRHRDGSKSMAN 61
IS G+A+V F DA R LD + F R + + W++ + + G
Sbjct: 47 ISRRSLGYAYVNF---HQPGDAERALDTMNFEPLKNRPMRIMWSQRDPSLRKSG------ 97
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEAT 114
+F+ N + I F +GN+L R+ R + FV FET+E A
Sbjct: 98 ---VGNVFIKNLHK-DIDNKAIFDTFSAFGNILSCRVATDEQGNSRGYGFVHFETEEAAN 153
Query: 115 KALESTDRSKLVDRVISV 132
+A+ + L ++ + V
Sbjct: 154 EAINKVNGMLLNEKKVFV 171
>gi|392585482|gb|EIW74821.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 834
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 76/155 (49%), Gaps = 12/155 (7%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA-RGERGRHRDGSKSMANQRPTKT 67
G+ FV F+ A A++ + + D LSV++A RG+ ++G + + R TK
Sbjct: 658 GYGFVGFKTPEHARGALKSVQGLVL--DGHALSVKFAGRGQEEVGQEGKGASSKGRTTK- 714
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALEST 120
++ P ++DI+ F +G + VR+ R FAF++F T++EA A +
Sbjct: 715 -MIVKNVPFEASKKDIRELFGAHGQLKSVRLPKKFDSRSRGFAFLEFLTRQEAENAYAAL 773
Query: 121 DRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYG 155
+ L+ R + +++A +D + D + G+G
Sbjct: 774 RHTHLLGRHLVLQWAEEDGATDVDALRAKAGVGFG 808
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKA 116
T LF+ N E +I+ HF+P+GN+ V I + A+V F A A
Sbjct: 292 TSRLFLRNLT-FSCTEEEIREHFQPFGNISQVHIPLDSSTRKPKGVAYVTFSEGASALSA 350
Query: 117 LESTDRSKLVDRVISVEYAL 136
ES D+ RV+ + A+
Sbjct: 351 YESLDKKSFQGRVLHILPAV 370
>gi|223649326|gb|ACN11421.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 628
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA R D MANQ K L
Sbjct: 292 GFCFLEYEDHKSAAQARRCLMSGKVMVWGNPVTVEWANPVTERDTD---VMANQ--AKVL 346
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV T E +K F +G + V +++AFV FE ++ A KA+ + +L
Sbjct: 347 FVRKLATSVTEELLVKT-FSAFGKLERVYKLKDYAFVHFEDRDAAVKAMVDMNGKELGGE 405
Query: 129 VI 130
I
Sbjct: 406 AI 407
>gi|296005552|ref|XP_002809092.1| polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|225632040|emb|CAX64373.1| polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
Length = 414
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+ FV + D AA AI ++ + Y +RL V ++ K P T+
Sbjct: 182 GYGFVVYTDPHSAALAISNMNKVEV-YTGKRLKVLLKSSSNETNKRKIK------PGCTI 234
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKAL 117
FV + P ++D+KRHF YGN+L I+R + F+ FE Q+ A A+
Sbjct: 235 FVF-YLPNDWSDKDLKRHFSHYGNILGATIKRETNGKSRGYGFINFENQQSAINAV 289
>gi|225442420|ref|XP_002277538.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Vitis vinifera]
Length = 630
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 12/138 (8%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN----QRP 64
GF FV FE +A A+ L+ G + + + ER K M N +
Sbjct: 248 GFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELLKHEKEMVNCNIGKEK 307
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKAL 117
L+V N D + ++ HF G + ++ R+ F FV F T EEA KAL
Sbjct: 308 ASNLYVKNLDA-SVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKAL 366
Query: 118 ESTDRSKLVDRVISVEYA 135
+ + + L R + + A
Sbjct: 367 TTLNGTLLHGRSLYIAMA 384
>gi|154296406|ref|XP_001548634.1| hypothetical protein BC1G_13029 [Botryotinia fuckeliana B05.10]
gi|347839105|emb|CCD53677.1| similar to multiple RNA-binding domain-containing protein 1
[Botryotinia fuckeliana]
Length = 838
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 17/155 (10%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR-----GERGRHRDGSKSMANQR 63
GF F+ F A AI+ +D + D +L V+ + E R D +K +A +R
Sbjct: 657 GFGFIEFRTKSQAQAAIKAMDG--YTLDNHKLLVKASHKGADAAEEKRKEDRAKKLAGKR 714
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKA 116
T ++ P + DI++ F YG + VR+ R FAF F T EA A
Sbjct: 715 ---TKLIVKNLPFEASKSDIRKLFGTYGQLRSVRMPKKFDHSTRGFAFADFITAREAENA 771
Query: 117 LESTDRSKLVDRVISVEYALKDDSERDDRYDSPRR 151
LE+ + L+ R + +++A ++ + ++ + ++
Sbjct: 772 LEALKDTHLLGRRLVIDFASEETVDAEEEIEKMQK 806
>gi|339253564|ref|XP_003372005.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316967645|gb|EFV52050.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 2180
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ F D + A+ A R L + F L VEWA ++ ++ +
Sbjct: 343 GFCFLEFADHKSASQAKRRLGSSRFRPWMMELVVEWAE---------TQDDVDKETMSKV 393
Query: 69 FVINFDPIR--TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
++ P++ E +++ F YG V V+ +++AFV F +E+A KA+E+ +
Sbjct: 394 KILYLRPLKDSVSEEELRVRFSQYGTVERVKRIKDYAFVHFAEREQAEKAIEAMKGQEFD 453
Query: 127 DRVISVEYALKDDSERDD 144
V +A D +R D
Sbjct: 454 GVPCEVSFAKPTDRKRKD 471
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 25/145 (17%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE-----------RGRHRDGSK 57
GF FV FE+ DAA A+ L+ F D + EW G+ + + K
Sbjct: 259 GFGFVNFENSDDAARAVDALNGKTF--DDK----EWFVGKAQKKSERETELKQKFEQSLK 312
Query: 58 SMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQ 110
A++ L+V N D T ++ ++ HF P+G + ++ R+ FV F T
Sbjct: 313 EAADKSQGSNLYVKNLDESVTDDK-LREHFAPFGTITSCKVMRDPTGVSRGSGFVAFSTP 371
Query: 111 EEATKALESTDRSKLVDRVISVEYA 135
EEA++A+ + +V + + V A
Sbjct: 372 EEASRAITEMNGKMIVTKPLYVALA 396
>gi|222637670|gb|EEE67802.1| hypothetical protein OsJ_25544 [Oryza sativa Japonica Group]
Length = 338
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN------Q 62
GFAFV FED RDA DAIRG D + +D RL VE A G RG + S
Sbjct: 112 GFAFVEFEDPRDAEDAIRGRDG--YNFDGNRLRVELAHGGRGNSSSFNNSGGGGRRGGVS 169
Query: 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALE 118
R T+ ++ P +D+K H G+V + + R V + ++ A+
Sbjct: 170 RHTEYRVLVTGLPSSASWQDLKDHMRNAGDVCYSEVYREGGGTIGIVDYTNYDDMKYAIR 229
Query: 119 STDRSKL 125
D S+
Sbjct: 230 KLDDSEF 236
>gi|38567159|emb|CAE76453.1| related to MRD1 [Neurospora crassa]
Length = 790
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 17/149 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA-RG----ERGRHRDGSKSMANQR 63
GF FV F A A++ +D D ++SV+ + RG E R D +K ANQ
Sbjct: 609 GFGFVAFRTKDQAQAALKVMDGQVL--DAHKISVKASHRGLDAAEERRREDMAKKAANQ- 665
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKA 116
T V+ P +++++ F YG ++ +RI R FAF +F T +EA A
Sbjct: 666 --GTKLVVKNLPFEVTKKEVRTLFSAYGKLVALRIPKKFNQSSRGFAFAEFSTAKEALNA 723
Query: 117 LESTDRSKLVDRVISVEYALKDDSERDDR 145
S + ++ R + +++A +D + +D+
Sbjct: 724 FNSLKDTHILGRRLVIDFAQAEDIDPEDQ 752
>gi|399218146|emb|CCF75033.1| unnamed protein product [Babesia microti strain RI]
Length = 230
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 15/128 (11%)
Query: 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKS------- 58
+Y +AF+ F RDA DA+ D + +D+ RL VE++ GR R G++
Sbjct: 52 NYTAYAFIEFYHMRDAEDAVESRDG--YNFDKYRLRVEFS----GRKRSGNQGDKLRRYN 105
Query: 59 -MANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKAL 117
+N R L + N R +DIK H + G V HV I+ +V++ + + AL
Sbjct: 106 DYSNTRTEHRLVISNISS-SCRWQDIKDHMKRAGPVGHVCIKDGRGYVEYINKSDMKYAL 164
Query: 118 ESTDRSKL 125
E D S+L
Sbjct: 165 EKYDGSEL 172
>gi|115474019|ref|NP_001060608.1| Os07g0673500 [Oryza sativa Japonica Group]
gi|113612144|dbj|BAF22522.1| Os07g0673500 [Oryza sativa Japonica Group]
Length = 296
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN------Q 62
GFAFV FED RDA DAIRG D + +D RL VE A G RG + S
Sbjct: 46 GFAFVEFEDPRDAEDAIRGRDG--YNFDGNRLRVELAHGGRGNSSSFNNSGGGGRRGGVS 103
Query: 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALE 118
R T+ ++ P +D+K H G+V + + R V + ++ A+
Sbjct: 104 RHTEYRVLVTGLPSSASWQDLKDHMRNAGDVCYSEVYREGGGTIGIVDYTNYDDMKYAIR 163
Query: 119 STDRSKL 125
D S+
Sbjct: 164 KLDDSEF 170
>gi|156054690|ref|XP_001593271.1| hypothetical protein SS1G_06193 [Sclerotinia sclerotiorum 1980]
gi|154703973|gb|EDO03712.1| hypothetical protein SS1G_06193 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 842
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 17/155 (10%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR-----GERGRHRDGSKSMANQR 63
GF F+ F A AI+ +D + D +L V+ + E R D +K +A +R
Sbjct: 661 GFGFIEFRTKSQAQAAIKAMDG--YTLDNHKLLVKASHKGADAAEEKRKEDRAKKLAGKR 718
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKA 116
T ++ P + DI++ F YG + VR+ R FAF F T EA A
Sbjct: 719 ---TKLIVKNLPFEASKSDIRKLFGTYGQLRSVRMPKKFDHSTRGFAFADFITAREAENA 775
Query: 117 LESTDRSKLVDRVISVEYALKDDSERDDRYDSPRR 151
LE+ + L+ R + +++A ++ + ++ + ++
Sbjct: 776 LEALKDTHLLGRRLVIDFASEETVDAEEEIEKMQK 810
>gi|335308866|ref|XP_003361402.1| PREDICTED: RNA-binding protein 28-like, partial [Sus scrofa]
Length = 365
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 25/152 (16%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG-------ERGRHRDGSKSMAN 61
GF +V F D A++ + ++ R+++V A+ E+G++ +
Sbjct: 99 GFGYVTFSMLEDVQKALKEITT----FEGRKINVIVAKKKLRNKSKEKGKNENSESPKKQ 154
Query: 62 QRPTKTL-------FVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQF 107
+P K +I + E D+K F P+G VL V I R FAFVQF
Sbjct: 155 PKPKKAKVADKKARLIIRNLSFKCSEDDLKTVFAPFGAVLEVNIPRKPDGKMRGFAFVQF 214
Query: 108 ETQEEATKALESTDRSKLVDRVISVEYALKDD 139
+ EA KAL S + ++ R ++V++A+ D
Sbjct: 215 KNLLEAGKALRSMNMKEIKGRTVAVDWAVAKD 246
>gi|297743165|emb|CBI36032.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 57/138 (41%), Gaps = 12/138 (8%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-- 66
GF FV FE +A A+ L+ G + + + ER K M N K
Sbjct: 248 GFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELLKHEKEMVNCNIGKEK 307
Query: 67 --TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKAL 117
L+V N D + ++ HF G + ++ R+ F FV F T EEA KAL
Sbjct: 308 ASNLYVKNLDA-SVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKAL 366
Query: 118 ESTDRSKLVDRVISVEYA 135
+ + + L R + + A
Sbjct: 367 TTLNGTLLHGRSLYIAMA 384
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 25/145 (17%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG-----------ERGRHRDGSK 57
GF FV FE+ DAA A+ L+ F D + EW G R R+ K
Sbjct: 240 GFGFVNFENADDAARAVESLNGHKF--DDK----EWYVGRAQKKSERETELRVRYEQNLK 293
Query: 58 SMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQ 110
A++ + L+V N DP + E+ +K F P+G V ++ R+ FV F T
Sbjct: 294 EAADKFQSSNLYVKNLDPSISDEK-LKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATP 352
Query: 111 EEATKALESTDRSKLVDRVISVEYA 135
EEAT+A+ + + + V A
Sbjct: 353 EEATEAMSQLSGKMIESKPLYVAIA 377
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 19/131 (14%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+ +V F + +DAA AI+ L+ IP Y + + V ++ HRD S + +
Sbjct: 62 GYGYVNFTNPQDAARAIQELNYIPL-YGKP-IRVMYS------HRDPS---VRRSGAGNI 110
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTD 121
F+ N D + + F +GN++ ++ + + FVQ+ +E A KA+E +
Sbjct: 111 FIKNLDE-SIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 169
Query: 122 RSKLVDRVISV 132
L D+ + V
Sbjct: 170 GMLLNDKQVYV 180
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+ FV + ++ A AI L+ + + + R ER S AN+ +
Sbjct: 149 GYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQER-------DSTANKTKFTNV 201
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTD 121
+V N T + D+K F YG + + ++ F FV FE ++A +A+ES +
Sbjct: 202 YVKNLAE-STTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 260
Query: 122 RSKLVDR 128
K D+
Sbjct: 261 GHKFDDK 267
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 25/145 (17%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG-----------ERGRHRDGSK 57
GF FV FE+ DAA A+ L+ F D + EW G R R+ K
Sbjct: 256 GFGFVNFENADDAARAVESLNGHKF--DDK----EWYVGRAQKKSERETELRVRYEQNLK 309
Query: 58 SMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQ 110
A++ + L+V N DP + E+ +K F P+G V ++ R+ FV F T
Sbjct: 310 EAADKFQSSNLYVKNLDPSISDEK-LKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATP 368
Query: 111 EEATKALESTDRSKLVDRVISVEYA 135
EEAT+A+ + + + V A
Sbjct: 369 EEATEAMSQLSGKMIESKPLYVAIA 393
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 19/131 (14%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+ +V F + +DAA AI+ L+ IP Y + + V ++ HRD S + +
Sbjct: 78 GYGYVNFTNPQDAARAIQELNYIPL-YGKP-IRVMYS------HRDPS---VRRSGAGNI 126
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTD 121
F+ N D + + F +GN++ ++ + + FVQ+ +E A KA+E +
Sbjct: 127 FIKNLDE-SIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 122 RSKLVDRVISV 132
L D+ + V
Sbjct: 186 GMLLNDKQVYV 196
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+ FV + ++ A AI L+ + + + R ER S AN+ +
Sbjct: 165 GYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQER-------DSTANKTKFTNV 217
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTD 121
+V N T + D+K F YG + + ++ F FV FE ++A +A+ES +
Sbjct: 218 YVKNLAE-STTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276
Query: 122 RSKLVDR 128
K D+
Sbjct: 277 GHKFDDK 283
>gi|294868388|ref|XP_002765513.1| CUG triplet repeat RNA-binding protein, putative [Perkinsus marinus
ATCC 50983]
gi|239865556|gb|EEQ98230.1| CUG triplet repeat RNA-binding protein, putative [Perkinsus marinus
ATCC 50983]
Length = 403
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 22/203 (10%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G AFV F D + +AI L+ R L+V +A+GE R ++ + L
Sbjct: 59 GLAFVRFRDLAEGQNAIAALNGAILPESARPLTVIYAQGEAERLGLTKETPGMRSEETKL 118
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKL 125
+V P T ++++ FEP+G V V + +AFV+F +++A +A+ +
Sbjct: 119 YVAGLGP-STEAVELRKIFEPFGRVTEVHVPGPHALYAFVRFAEEKDAMRAISDVNGRVQ 177
Query: 126 VD---RVISVEYALKDDSERDDR-----------YDSPRRGGYGRHSPYGRSPSPAYRRR 171
V+ R++ V+ A S R Y SP GY H+P S P +
Sbjct: 178 VEGSQRMLEVKVADPSSSRGPTRRPSGSLPPVSSYGSPAGNGY-DHTP---SVQPRFVSG 233
Query: 172 PSPDYGRGRSPAYDRYNGPVYDQ 194
S YG+ P G Q
Sbjct: 234 MSQGYGQASVPLNSTMAGDTQGQ 256
>gi|255558828|ref|XP_002520437.1| FUS-interacting serine-arginine-rich protein 1, putative [Ricinus
communis]
gi|223540279|gb|EEF41850.1| FUS-interacting serine-arginine-rich protein 1, putative [Ricinus
communis]
Length = 399
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 63/144 (43%), Gaps = 38/144 (26%)
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEA 113
+ P L+V P R +RD+++HF G V+ V + R F FV T EA
Sbjct: 43 ENPGNNLYVTGLSP-RITKRDLEKHFASEGKVIDVHLVVDPWTRESRGFGFVTMSTLVEA 101
Query: 114 TKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPA------ 167
+ ++ +RS L RVI+VE A + RR GR+P+P
Sbjct: 102 DRCIKYLNRSVLEGRVITVEKAKR------------RR---------GRTPTPGRYLGLR 140
Query: 168 --YRRRPSPDYGRGRSPAYDRYNG 189
RR +P + RSP+Y RY G
Sbjct: 141 TIRVRRLTPSHSPHRSPSYSRYRG 164
>gi|209875787|ref|XP_002139336.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209554942|gb|EEA04987.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 266
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 12/92 (13%)
Query: 55 GSKSMANQR---PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--------FA 103
GS S ++Q+ P+ TL+V +RT+E D++R FE YG V R+ N F
Sbjct: 64 GSTSASDQKCNDPSSTLYVCRLS-LRTKEDDLRRLFEEYGKVTDCRLVTNPLSGESRCFG 122
Query: 104 FVQFETQEEATKALESTDRSKLVDRVISVEYA 135
FV EEA +A ++ D + D + VE A
Sbjct: 123 FVTMSCPEEAARARDALDCKEYQDANLKVEMA 154
>gi|242802831|ref|XP_002484053.1| pre-rRNA processing protein Mrd1, putative [Talaromyces stipitatus
ATCC 10500]
gi|218717398|gb|EED16819.1| pre-rRNA processing protein Mrd1, putative [Talaromyces stipitatus
ATCC 10500]
Length = 812
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 19/158 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR-----GERGRHRDGSKSMANQR 63
GF FV F A A+ +D + D+ +L V+ + E R D +K +A +R
Sbjct: 632 GFGFVEFRTKEQAQAALAVMDG--YTLDQHKLVVKTSHRGMDAAETRRQEDNAKKVAARR 689
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKA 116
T +I P + + D++ F YG + VR+ R FAF F + EA A
Sbjct: 690 ---TKIIIKNLPFQATKHDVRSLFGAYGQLRSVRVPKKFDRSARGFAFADFVSSREAENA 746
Query: 117 LESTDRSKLVDRVISVEYALKD--DSERDDRYDSPRRG 152
+++ + L+ R + +EYA + D+E + R + G
Sbjct: 747 MDALKNTHLLGRKLVLEYASAEAIDAEEEIRKIEKKTG 784
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALES 119
+R T T+ V NF + D+++ FEP+G + + + A V+F +EA+KA +
Sbjct: 465 ERGTTTILVKNFS-YGVKVADLRKLFEPFGQLTRLLMPPSGTIAIVEFAKPDEASKAFKG 523
Query: 120 TDRSKLVDRVISVEYALKD 138
KL D ++ +E A KD
Sbjct: 524 LAYRKLGDSILFLERAPKD 542
>gi|224063959|ref|XP_002301321.1| predicted protein [Populus trichocarpa]
gi|222843047|gb|EEE80594.1| predicted protein [Populus trichocarpa]
Length = 79
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 28/39 (71%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 46
+GFAFVY ED+RDA DAIR LD FG RRL VEW +
Sbjct: 35 SGFAFVYMEDERDAEDAIRRLDQTEFGRKGRRLRVEWTK 73
>gi|348518315|ref|XP_003446677.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Oreochromis niloticus]
Length = 629
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 287 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADP---IEDPDPEVMAK---VKVL 340
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AF+ FE ++ A KALE + +L
Sbjct: 341 FVRNLANGVTEEL-LEKSFSEFGKLERVKKLKDYAFIHFEERDGAVKALEEMNGKELEGE 399
Query: 129 VISVEYALKDDSERDDR 145
I + +A D +R +R
Sbjct: 400 PIEIVFAKPPDQKRKER 416
>gi|296422908|ref|XP_002841000.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637228|emb|CAZ85191.1| unnamed protein product [Tuber melanosporum]
Length = 332
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 36 DRRRLSVEWARGERGRHRDG-SKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 94
DRR + ERG R G S S +Q P LFV P R E D+ R F YG V
Sbjct: 63 DRRPMDTASTSSERGGERRGPSSSDGSQNPGTNLFVTGIHP-RLTEDDVTRLFAKYGEVE 121
Query: 95 --------HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
H + R F FV+ T ++A A E R +S+E A
Sbjct: 122 KCQIMLDPHTKESRGFGFVKLATLDQADSAKEHLQGEVFEGRTLSIEKA 170
>gi|85116206|ref|XP_965014.1| hypothetical protein NCU02611 [Neurospora crassa OR74A]
gi|74696746|sp|Q7SG09.1|MRD1_NEUCR RecName: Full=Multiple RNA-binding domain-containing protein 1
gi|28926814|gb|EAA35778.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 827
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 17/149 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA-RG----ERGRHRDGSKSMANQR 63
GF FV F A A++ +D D ++SV+ + RG E R D +K ANQ
Sbjct: 646 GFGFVAFRTKDQAQAALKVMDGQVL--DAHKISVKASHRGLDAAEERRREDMAKKAANQ- 702
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKA 116
T V+ P +++++ F YG ++ +RI R FAF +F T +EA A
Sbjct: 703 --GTKLVVKNLPFEVTKKEVRTLFSAYGKLVALRIPKKFNQSSRGFAFAEFSTAKEALNA 760
Query: 117 LESTDRSKLVDRVISVEYALKDDSERDDR 145
S + ++ R + +++A +D + +D+
Sbjct: 761 FNSLKDTHILGRRLVIDFAQAEDIDPEDQ 789
>gi|384483751|gb|EIE75931.1| hypothetical protein RO3G_00635 [Rhizopus delemar RA 99-880]
Length = 831
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 14/150 (9%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+ FV F+ +A AI + + D L ++ + H+ G+ S ++ P T
Sbjct: 682 GYGFVEFDSKSNAEKAINAMQG--YLLDEHALQLKLSH-----HKAGTNSKKSKTPETTK 734
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTD 121
V+ P ++D++ F YG + +R+ R FAF+ F T++EA ++
Sbjct: 735 LVVRNVPFEATDKDLRELFGSYGQLKSLRMPKKFTGGHRGFAFLDFLTKQEAKNVYDNMG 794
Query: 122 RSKLVDRVISVEYALKDDSERDDRYDSPRR 151
L R + +E+A + D + D R+
Sbjct: 795 NIHLYGRHLVLEWAQEGDKASESSLDGSRK 824
>gi|354544113|emb|CCE40835.1| hypothetical protein CPAR2_108740 [Candida parapsilosis]
Length = 650
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-- 66
GF FV +E+ + A DA+ L++ + +++ V A+ +R R + K R K
Sbjct: 285 GFGFVNYEEHKSAVDAVEALNDKEI--NGQKIYVGRAQKKRERTEELKKQYEAIRLEKLS 342
Query: 67 -----TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEAT 114
LF+ N D E+ ++ F+P+G + ++ + F FV F T EEAT
Sbjct: 343 KYQGVNLFIKNLDDQIDSEK-LEEEFKPFGTITSAKVMVDDAGKSKGFGFVCFSTPEEAT 401
Query: 115 KALESTDRSKLVDRVISVEYALKDDSER 142
KA+ ++ + + + V A + D R
Sbjct: 402 KAITEMNQRMINGKPLYVALAQRKDVRR 429
>gi|170592443|ref|XP_001900974.1| hnRNP-R, Q splicing factor family protein [Brugia malayi]
gi|158591041|gb|EDP29654.1| hnRNP-R, Q splicing factor family protein [Brugia malayi]
Length = 709
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 7/127 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ F D + A+DA R + L V+WA E+ D ++MA K L
Sbjct: 420 GFCFLDFCDHKTASDAKRKIHAGKLRPWNSDLVVDWA--EQQEEPD-EETMAK---VKVL 473
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
+V N T E+ +K F YG V + R++AF+ F +E A KA+E+ + ++L
Sbjct: 474 YVRNLKEAVTEEQ-LKEMFSAYGEVDRAKKIRDYAFIHFMEREPAIKAMEALNGTELEGI 532
Query: 129 VISVEYA 135
I + A
Sbjct: 533 AIDISLA 539
>gi|432921333|ref|XP_004080106.1| PREDICTED: RNA-binding protein 4.1-like [Oryzias latipes]
Length = 335
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 16/126 (12%)
Query: 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK 66
Y +AFV+ +D + A AIR L G R ++VE +RG+ N +
Sbjct: 34 YRNYAFVHMDDRKCATKAIRELHLRRVG--GRAMNVEPSRGK------------NPQGAL 79
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
L V+N + + E +++ FE YG+V + +NFAFV +E AL++ D
Sbjct: 80 KLHVVNVE--KGSESELRELFEEYGSVTECAVIKNFAFVHMANYDEGMDALQALDNKDFQ 137
Query: 127 DRVISV 132
+ I V
Sbjct: 138 GKRIQV 143
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ N P T + +I+ F YG V RN+AFV + ++ ATKA+ ++
Sbjct: 4 IFIGNLSP-ETEKEEIEALFREYGAVTECAKYRNYAFVHMDDRKCATKAIRELHLRRVGG 62
Query: 128 RVISVE 133
R ++VE
Sbjct: 63 RAMNVE 68
>gi|330842446|ref|XP_003293189.1| hypothetical protein DICPUDRAFT_41662 [Dictyostelium purpureum]
gi|325076506|gb|EGC30286.1| hypothetical protein DICPUDRAFT_41662 [Dictyostelium purpureum]
Length = 880
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 17/145 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFG--------YDRRRLSVEWARGERGRHRDGSKSMA 60
GF F+ F + A + I+ L+ D+ ++V+ A+ R A
Sbjct: 716 GFGFIEFSSKQGAYECIKRLNGATIDDHEISLKLSDKNEVNVK-AKEMPENKRSSLPQNA 774
Query: 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEA 113
+P+ + + N P + ++I++ F YG + VRI R F FV+F T+EEA
Sbjct: 775 KSKPSSKIIIKNL-PFESTTKEIRKLFAAYGEIQSVRIPKKPNGGHRGFGFVEFLTEEEA 833
Query: 114 TKALESTDRSKLVDRVISVEYALKD 138
A+E+ S R + ++YA +D
Sbjct: 834 KNAMEALGSSHFYGRHLVLQYAEQD 858
>gi|241574282|ref|XP_002403075.1| alternative splicing factor SRp55/B52/SRp75, putative [Ixodes
scapularis]
gi|215502148|gb|EEC11642.1| alternative splicing factor SRp55/B52/SRp75, putative [Ixodes
scapularis]
Length = 364
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 15/135 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG-----RHRDGSKSMANQR 63
GF FV F+D RDA DA+ L+ D R+SVE ARG R R R + S +R
Sbjct: 37 GFGFVEFDDPRDADDAVYELNGKDLMGD--RVSVELARGIRRGADYYRSRSTAPSPPRRR 94
Query: 64 ---PTKTLFVINFDPIRTRE--RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATK 115
PT+T + + + + +R +D+K + G V + ++RRN V+F T +
Sbjct: 95 YGPPTRTEYQLTVENLSSRVSWQDLKDYMRQAGEVTYADAHKLRRNEGVVEFATYSDMKN 154
Query: 116 ALESTDRSKLVDRVI 130
AL+ D + L R I
Sbjct: 155 ALDKLDNTDLSGRRI 169
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 71 INFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 130
+N+D RERD++R F+ +G + + I+ F FV+F+ +A A+ + L+ +
Sbjct: 10 LNYD---VRERDLERFFKGFGRIREISIKNGFGFVEFDDPRDADDAVYELNGKDLMGDRV 66
Query: 131 SVEYA 135
SVE A
Sbjct: 67 SVELA 71
>gi|307178104|gb|EFN66931.1| Nucleolysin TIAR [Camponotus floridanus]
Length = 393
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 18/142 (12%)
Query: 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR-------HRDGS 56
+L G+AFV F +A AI ++ G R + W+ + H + S
Sbjct: 133 TLKSKGYAFVSFVKKSEAEAAINAMNGQWLG--SRSIRTNWSTRKPPPPRSERPRHSNNS 190
Query: 57 K----SMANQR-PTK-TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--FAFVQFE 108
K + NQ PT T++ F T E IK+ F P+G + +R+ ++ +AF++F
Sbjct: 191 KPNYEEVYNQSSPTNCTVYCGGFTNGITDEL-IKKTFSPFGTIQDIRVFKDKGYAFIKFT 249
Query: 109 TQEEATKALESTDRSKLVDRVI 130
T+E AT A+EST +++ ++
Sbjct: 250 TKEAATHAIESTHNTEINGSIV 271
>gi|332029721|gb|EGI69600.1| Nucleolysin TIAR [Acromyrmex echinatior]
Length = 393
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 18/147 (12%)
Query: 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR-------HRDGS 56
+L G+AFV F +A AI ++ G R + W+ + H + S
Sbjct: 133 TLKSKGYAFVSFVKKSEAEAAINAMNGQWLG--SRSIRTNWSTRKPPPPRSERPRHSNNS 190
Query: 57 K----SMANQR-PTK-TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--FAFVQFE 108
K + NQ PT T++ F T E IK+ F P+G + +R+ ++ +AF++F
Sbjct: 191 KPNYEEVYNQSSPTNCTVYCGGFTNGITDEL-IKKTFSPFGTIQDIRVFKDKGYAFIKFT 249
Query: 109 TQEEATKALESTDRSKLVDRVISVEYA 135
T+E AT A+EST +++ ++ +
Sbjct: 250 TKEAATHAIESTHNTEINGSIVKCFWG 276
>gi|350296911|gb|EGZ77888.1| multiple RNA-binding domain-containing protein 1 [Neurospora
tetrasperma FGSC 2509]
Length = 826
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 17/149 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA-RG----ERGRHRDGSKSMANQR 63
GF FV F A A++ +D D ++SV+ + RG E R D +K ANQ
Sbjct: 645 GFGFVAFRTKDQAQAALKVMDGQVL--DVHKISVKASHRGLDAAEERRREDMAKKAANQ- 701
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKA 116
T V+ P +++++ F YG ++ +RI R FAF +F T +EA A
Sbjct: 702 --GTKLVVKNLPFEVTKKEVRTLFSTYGKLVALRIPKKFNQSSRGFAFAEFSTAKEALNA 759
Query: 117 LESTDRSKLVDRVISVEYALKDDSERDDR 145
S + ++ R + +++A +D + +D+
Sbjct: 760 FNSLKDTHILGRRLVIDFAQAEDIDPEDQ 788
>gi|215741122|dbj|BAG97617.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 247
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN------Q 62
GFAFV FED RDA DAIRG D + +D RL VE A G RG + S
Sbjct: 46 GFAFVEFEDPRDAEDAIRGRDG--YNFDGNRLRVELAHGGRGNSSSFNNSGGGGRRGGVS 103
Query: 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALE 118
R T+ ++ P +D+K H G+V + + R V + ++ A+
Sbjct: 104 RHTEYRVLVTGLPSSASWQDLKDHMRNAGDVCYSEVYREGGGTIGIVDYTNYDDMKYAIR 163
Query: 119 STDRSKL 125
D S+
Sbjct: 164 KLDDSEF 170
>gi|336464808|gb|EGO53048.1| hypothetical protein NEUTE1DRAFT_73283 [Neurospora tetrasperma FGSC
2508]
Length = 827
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 17/149 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA-RG----ERGRHRDGSKSMANQR 63
GF FV F A A++ +D D ++SV+ + RG E R D +K ANQ
Sbjct: 646 GFGFVAFRTKDQAQAALKVMDGQVL--DAHKISVKASHRGLDAAEERRREDMAKKAANQ- 702
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKA 116
T V+ P +++++ F YG ++ +RI R FAF +F T +EA A
Sbjct: 703 --GTKLVVKNLPFEVTKKEVRTLFSTYGKLVALRIPKKFNQSSRGFAFAEFSTAKEALNA 760
Query: 117 LESTDRSKLVDRVISVEYALKDDSERDDR 145
S + ++ R + +++A +D + +D+
Sbjct: 761 FNSLKDTHILGRRLVIDFAQAEDIDPEDQ 789
>gi|328773827|gb|EGF83864.1| hypothetical protein BATDEDRAFT_8977, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 873
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ F DA ++ + N F D L +++++ + R + T
Sbjct: 705 GFGFLGFASTEDATKCLKAMQN--FKLDNHVLQLKYSKPVAPQKRTLEMDDEDDTIKGTK 762
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTD 121
V+ P ++DIK F + V VRI R FAFV F T++EA A ++
Sbjct: 763 LVVRNVPFEASKKDIKELFSSFAQVKSVRIPTKYDGQHRGFAFVDFLTKQEAKTAYDTLG 822
Query: 122 RSKLVDRVISVEYALKDDS 140
+ L R + +E+A D+S
Sbjct: 823 ATHLYGRHLVLEWAQDDES 841
>gi|164661195|ref|XP_001731720.1| hypothetical protein MGL_0988 [Malassezia globosa CBS 7966]
gi|159105621|gb|EDP44506.1| hypothetical protein MGL_0988 [Malassezia globosa CBS 7966]
Length = 824
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 19/166 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR-PTKT 67
G+ FV F A A + +D + D LSV AR R RD QR P+
Sbjct: 634 GYGFVGFTSAEHAIHAQKAMDQ--YVLDGHTLSVSLAR----RGRDADDDAPVQRAPSAK 687
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALEST 120
+ V N P ++DI+ F +G + VR+ R FAFV+F ++ EA A+ +
Sbjct: 688 MLVKNV-PFEATKKDIRELFGAHGQLKSVRVPKQVHGRTRGFAFVEFVSRREAENAMAAL 746
Query: 121 DRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSP 166
+ L+ R + +E+A D+E D R RH+ G S P
Sbjct: 747 RHTHLLGRHLVLEWA--GDAEGTAGVDELRE--KTRHAYVGESDRP 788
>gi|432102707|gb|ELK30188.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 650
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 75/178 (42%), Gaps = 23/178 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQ-RPTK- 66
GF F+ FE DA AI ++ FG + +S + ER Q R K
Sbjct: 240 GFGFIRFECHADAKRAIEEVNGKQFGGRKIYVSRAQKKKEREEELQQKLEEIKQNRIAKY 299
Query: 67 ---TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI------RRNFAFVQFETQEEATKAL 117
+LFV N T + +++ F P+G V ++ R+ F FV F ++EEA KA+
Sbjct: 300 HGMSLFVKNLAE-STDDEHLRKIFAPFGTVTSAKVIVKGGRRKGFGFVSFSSREEAKKAV 358
Query: 118 ESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPD 175
E L R + V YA RY RR + + YG+ + + +PD
Sbjct: 359 EEMHGKMLSARPLYVSYA---------RYKQERRAYFASY--YGKKKASPAKSPSTPD 405
>gi|294659673|ref|XP_002770625.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
gi|218511736|sp|Q6BI95.2|PABP_DEBHA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|199434145|emb|CAR65959.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
Length = 627
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 105/263 (39%), Gaps = 54/263 (20%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-- 66
GF FV FE+ A A+ L++ + +++ V A+ +R R + K N R K
Sbjct: 273 GFGFVNFENHESAVKAVDELNDKEI--NGQKIYVGRAQKKRERLEELKKQYENTRLEKLS 330
Query: 67 -----TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEAT 114
LF+ N D E+ ++ F+P+G++ R+ + F FV F + EEAT
Sbjct: 331 KYQGVNLFIKNLDDTIDSEK-LEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEAT 389
Query: 115 KALESTDRSKLVDRVISVEYALKDDSERDD------------RYDSPRRGGYGRHSPYGR 162
KA+ ++ + + + V A + D R ++ GG P
Sbjct: 390 KAITEMNQRMIYGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAATGGI----PGQF 445
Query: 163 SPSPAYRRRPS--PDYGRGRSPAYDRYNGPVYD-----------QRRSPDHGRHRSPVPV 209
P Y ++P P GRG P + GP Q + P G + PVPV
Sbjct: 446 IPPMFYGQQPGFFPPNGRGNGP----FPGPNPQMMMPRGQIPPPQGQWPRPGPNGQPVPV 501
Query: 210 YDRRRSPDYGR--NRSPNFGRYR 230
Y P YG N N GR +
Sbjct: 502 YG--MPPVYGGDFNNGANGGRQQ 522
>gi|442754133|gb|JAA69226.1| Putative alternative splicing factor srp55/b52/srp75 rrm
superfamily [Ixodes ricinus]
Length = 363
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 15/135 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG-----RHRDGSKSMANQR 63
GF FV F+D RDA DA+ L+ D R+SVE ARG R R R + S +R
Sbjct: 37 GFGFVEFDDPRDADDAVYELNGKDLMGD--RVSVELARGIRRGADYYRSRSTAPSPPRRR 94
Query: 64 ---PTKTLFVINFDPIRTRE--RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATK 115
PT+T + + + + +R +D+K + G V + ++RRN V+F T +
Sbjct: 95 YGPPTRTEYQLTVENLSSRVSWQDLKDYMRQAGEVTYADAHKLRRNEGVVEFATYSDMKN 154
Query: 116 ALESTDRSKLVDRVI 130
AL+ D + L R I
Sbjct: 155 ALDKLDNTDLSGRRI 169
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 71 INFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 130
+N+D RERD++R F+ +G + + I+ F FV+F+ +A A+ + L+ +
Sbjct: 10 LNYD---VRERDLERFFKGFGRIREISIKNGFGFVEFDDPRDADDAVYELNGKDLMGDRV 66
Query: 131 SVEYA 135
SVE A
Sbjct: 67 SVELA 71
>gi|294460856|gb|ADE76001.1| unknown [Picea sitchensis]
Length = 181
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 10/139 (7%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ F+ D A D + L D LS++ + + K + + +
Sbjct: 13 GFCFIEFDTDETARDVCKKLQGAVL--DGHALSLQLSHSRKEAKSTHEKKYDKSKSSTKI 70
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTD 121
V N ++D+ + F P+G + +R+ R FAF++F T++EA A +
Sbjct: 71 IVRNV-AFEATKKDLSQLFSPFGQIKSLRLPKKADQSHRGFAFIEFVTKQEAENAFNALS 129
Query: 122 RSKLVDRVISVEYALKDDS 140
S L R + +E A +D+S
Sbjct: 130 SSHLYGRHLVLEQAREDES 148
>gi|348525823|ref|XP_003450421.1| PREDICTED: RNA-binding protein 4B-like [Oreochromis niloticus]
Length = 347
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 77/170 (45%), Gaps = 20/170 (11%)
Query: 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK 66
Y +AFV+ ED + A AIR L + R ++VE +R +Q P K
Sbjct: 34 YKNYAFVHMEDRKSATKAIRELHLHKL--NGRPINVEPSRS------------TDQGPVK 79
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
L V N + + +++++ F YG V I +NFAFV +EA AL+ D ++
Sbjct: 80 -LHVANVE--KGFDKELRDLFLEYGTVTECSIVKNFAFVHMSNSDEAMDALQGLDNTEFQ 136
Query: 127 DRVISVEYAL---KDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPS 173
+ I V+ + + E ++ P RGGY G P P YR R S
Sbjct: 137 GKRIHVQISKSRPRGGPEEEEYPPPPVRGGYFPPRFPGERPEPPYRGRMS 186
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ N T + +I+ F YG V +N+AFV E ++ ATKA+ KL
Sbjct: 4 IFIGNLSQ-NTEKDEIEALFTQYGTVTECAKYKNYAFVHMEDRKSATKAIRELHLHKLNG 62
Query: 128 RVISVE 133
R I+VE
Sbjct: 63 RPINVE 68
>gi|212540104|ref|XP_002150207.1| pre-rRNA processing protein Mrd1, putative [Talaromyces marneffei
ATCC 18224]
gi|210067506|gb|EEA21598.1| pre-rRNA processing protein Mrd1, putative [Talaromyces marneffei
ATCC 18224]
Length = 812
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 19/158 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR-----GERGRHRDGSKSMANQR 63
GF F+ F A A+ +D + D+ +L V+ + E R D +K +A +R
Sbjct: 632 GFGFIEFRTKEQAQAALAVMDG--YTLDQHKLVVKTSHKGMDAAESRRQEDTAKKVAARR 689
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKA 116
T +I P + + D++ F YG + VR+ R FAF F + EA A
Sbjct: 690 ---TKIIIKNLPFQATKHDVRSLFGAYGQLRSVRVPKKFDRSARGFAFADFVSSREAENA 746
Query: 117 LESTDRSKLVDRVISVEYALKD--DSERDDRYDSPRRG 152
+++ + L+ R + +EYA + D+E + R + G
Sbjct: 747 MDALKNTHLLGRKLVLEYASAEAIDAEEEIRNIEKKTG 784
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 12/107 (11%)
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALES 119
+R T + V NF + +I++ FEP+G + + I A V+F +EA+KA +
Sbjct: 465 ERGTTAILVKNFS-YGVKAAEIRKLFEPFGQLTRLLIPPSGTIAIVEFAKPDEASKAFKG 523
Query: 120 TDRSKLVDRVISVEYALKDDSERDDRYDSPRRGG---YGRHSPYGRS 163
KL D ++ +E A K D ++SP G G P G+S
Sbjct: 524 LAYRKLGDSILFLERAPK------DLFESPPTGSALIAGVEGPEGKS 564
>gi|344302325|gb|EGW32630.1| hypothetical protein SPAPADRAFT_61691 [Spathaspora passalidarum
NRRL Y-27907]
Length = 291
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 48/73 (65%), Gaps = 5/73 (6%)
Query: 65 TKTLFV--INFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDR 122
+ LFV I FD R + ++ HF P G+V+ V++ R FAFV+F+ +E+AT+A+E+ +
Sbjct: 15 STQLFVRPIGFDVPREQ---LEEHFAPAGHVVDVQLMRGFAFVRFDNEEDATRAVETLND 71
Query: 123 SKLVDRVISVEYA 135
S+ + + VEYA
Sbjct: 72 SEFDGQRLLVEYA 84
>gi|409045875|gb|EKM55355.1| hypothetical protein PHACADRAFT_255926 [Phanerochaete carnosa
HHB-10118-sp]
Length = 672
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 17/141 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT- 67
GF FV FE +A +A+ GL + Y+ R+L V A+ + R + KS + + K
Sbjct: 271 GFGFVNFEFHEEAQNAVDGLHDTE--YNGRKLFVSRAQKKAEREEELRKSYEHAKMEKMS 328
Query: 68 ------LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEAT 114
L++ N D ER ++ FEP+G + ++ R+ F FV F + +EAT
Sbjct: 329 KYQGVNLYIKNLDDEIDDER-LRAEFEPFGTITSAKVMRDEKGSSKGFGFVCFSSPDEAT 387
Query: 115 KALESTDRSKLVDRVISVEYA 135
KA+ + + + + V A
Sbjct: 388 KAVAEMNNKMIGAKPLYVSLA 408
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+ FV++E A AI+ ++ + + + ++ ER D ++ +
Sbjct: 178 GYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISKKERQSKLDEIRAQ-----FTNI 232
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTD 121
+V N DP + E + + FE +GNV I+ + F FV FE EEA A++
Sbjct: 233 YVKNLDPEVSLE-EFTQLFEQFGNVTSAVIQTDEEGNSKGFGFVNFEFHEEAQNAVDGLH 291
Query: 122 RSKLVDRVISVEYALKDDSERDDRY 146
++ R + V A K +ER++
Sbjct: 292 DTEYNGRKLFVSRAQK-KAEREEEL 315
>gi|260944998|ref|XP_002616797.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
gi|238850446|gb|EEQ39910.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
Length = 620
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 102/262 (38%), Gaps = 37/262 (14%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-- 66
GF F+ FE+ A A+ L++ + +++ V A+ +R R + K R K
Sbjct: 273 GFGFINFENHDAAVKAVEELNDKEV--NGQKIYVGRAQKKRERIEELKKQYETTRLEKLS 330
Query: 67 -----TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEAT 114
LFV N D T E ++ F+P+G + ++ + F FV F EEAT
Sbjct: 331 KYQGVNLFVKNLDDSLTSEM-LEEEFKPFGTITSAKVMVDETGKSKGFGFVCFSAPEEAT 389
Query: 115 KALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSP 174
KA+ ++ ++ + + V A + D R + R + P + P
Sbjct: 390 KAITEMNQRMVLGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAAAGIPG-QFMPPM 448
Query: 175 DYGR--GRSPAYDRYNGPVYD---------------QRRSPDHGRHRSPVPVYDRRRSPD 217
YG+ G P R NGP Q + P G + PVPVY P
Sbjct: 449 FYGQQPGFFPGNGRNNGPFPGPNPQMMMPRGQMPPPQGQWPRAGPNGQPVPVYG--MPPV 506
Query: 218 YGRNRSPNFGRYRSRSPVRRSR 239
Y PN + R P R++
Sbjct: 507 YNDFNGPNGRQQRGYFPNNRNQ 528
>gi|291222526|ref|XP_002731265.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Saccoglossus kowalevskii]
Length = 648
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 10/147 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDN--IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK 66
GFAF++FE + A+ A R L + I + ++V+WA + ++MA K
Sbjct: 299 GFAFLHFESHKAASLARRRLMSGRIKV-WGNSNVTVDWADPQ---EEPDEETMAK---VK 351
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
L+V N P E +K F+ +G V V+ +++ FV FE ++ A KA+E + ++
Sbjct: 352 VLYVRNLTP-DAEEEKLKEAFQAFGTVERVKKLKDYCFVHFEERDAAVKAMEELNGKEVE 410
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGG 153
V+ + A + + RGG
Sbjct: 411 GSVVDISLAKPPSENKKKKERQQTRGG 437
>gi|168011117|ref|XP_001758250.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690706|gb|EDQ77072.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1252
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 75/154 (48%), Gaps = 19/154 (12%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG-----ERGRHRDGS----KSMA 60
+AFV F + DA +A L G R +E+A+G E R+RD K M
Sbjct: 106 YAFVNFRNLHDAVEAKNRLQGFVIGGMAIR--IEYAKGRNMLSELARYRDKDSDHVKCME 163
Query: 61 NQ---RPTKT--LFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEA 113
Q R T++ L+V P T+E+ I+ F YG + ++ RN AFV + E+A
Sbjct: 164 EQVAARATQSRHLWVGGISPNVTKEQ-IEGEFRNYGVLEDFKLLRERNCAFVDYIRIEDA 222
Query: 114 TKALESTDRSKLVDRVISVEYALKDDSERDDRYD 147
A+E+ +R ++ D + V+Y S+RD R D
Sbjct: 223 VNAVEALNRKRIGDEELRVDYGRSQPSKRDSRGD 256
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 70/166 (42%), Gaps = 27/166 (16%)
Query: 11 AFVYFEDDRDAADAIRGLDNIPFG-------YDRRRLSVEWARGERGRHRDGSKSMANQR 63
AFV + DA +A+ L+ G Y R + S +RG++ +DG S +
Sbjct: 212 AFVDYIRIEDAVNAVEALNRKRIGDEELRVDYGRSQPSKRDSRGDQKSSQDGYNSQHGLQ 271
Query: 64 ------------------PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFA 103
P++ L+V P + E ++R F PYG V V+ R +A
Sbjct: 272 GGSGNGVEGRVKADKDGGPSEILWVGFPLPSKVDEDGLRRAFMPYGEVERVKTFPGRTYA 331
Query: 104 FVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSP 149
FVQF+ EEAT+A + D D + + Y+ + D D P
Sbjct: 332 FVQFQKVEEATRAKNALDGKLFDDPRVHIRYSKSEIGPIDSPRDGP 377
>gi|403364183|gb|EJY81848.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 677
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHV-------RIRRNFAFVQFETQEEATKALE 118
K L++ N + DI++ FEP+GN++ R + +AFV +E +E A A+E
Sbjct: 7 KKLYIKNL-AFEVVQADIRQAFEPFGNIVTCDVPMENPRKCKGYAFVSYEDEETAKNAME 65
Query: 119 STDRSKLVDRVISVEYALK 137
+ ++++R I + YA K
Sbjct: 66 KMNNQQILNRNIFINYATK 84
>gi|156095500|ref|XP_001613785.1| splicing factor, arginine/serine-rich 1 [Plasmodium vivax Sal-1]
gi|148802659|gb|EDL44058.1| splicing factor, arginine/serine-rich 1, putative [Plasmodium
vivax]
Length = 314
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 17/160 (10%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
A FAF+ FED RDAADAI+ D FG ++ R+ V + + G++ R K+
Sbjct: 46 AAFAFIEFEDARDAADAIKEKDGCDFGGNKLRVEVPFNARDNGKYSSRGGRGMMGRGMKS 105
Query: 68 -----LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALE--- 118
+ ++ P+ +D+K H G H + +N V F +E+ +A+E
Sbjct: 106 RRGRYVVEVSGLPLSGSWQDLKDHLREAGECGHADVFKNGLGEVSFFHKEDMLEAIEKFN 165
Query: 119 -STDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRH 157
ST RS ++ K R+D GGYGR+
Sbjct: 166 GSTFRSHEGEKSKITIRQKKTSWHRED-------GGYGRY 198
>gi|453080807|gb|EMF08857.1| hypothetical protein SEPMUDRAFT_151767 [Mycosphaerella populorum
SO2202]
Length = 815
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 72/173 (41%), Gaps = 52/173 (30%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFV N + +RDI F PYG + + I++ + FVQF E+ T+AL + ++ D
Sbjct: 397 LFVGNLSSEKVTKRDIFHVFHPYGEIAQISIKQAYGFVQFLRVEDCTRALNAEQGRQIRD 456
Query: 128 RVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYR------------------ 169
+ I +E + R D+ + RR RS SPAY
Sbjct: 457 KRIHLEVSKPQKPPR-DKLQNHRR----------RSRSPAYDDRGRNDRRGRGRDGRDGG 505
Query: 170 ------RRPSP-DYGRG---------RSPAYDRYNGPVYDQRRSPDHGRHRSP 206
R PSP DY RG RSPAY R R+ D+G HR P
Sbjct: 506 RNSYGARSPSPRDYNRGQDDRYRTRSRSPAYGR-------DLRNWDNGPHRGP 551
>gi|403216303|emb|CCK70800.1| hypothetical protein KNAG_0F01320 [Kazachstania naganishii CBS
8797]
Length = 415
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 13/139 (9%)
Query: 5 LHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR-HRDGSKSMANQR 63
+ GF ++ F+ + AI +N G R L ++ ++ GR ++ SM+
Sbjct: 189 IKNKGFCYMDFKTETQMKSAIALSENQLNG---RNLLIKDSKSYVGRPDKNDLVSMSKNP 245
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P++ LF N T E +K HF+ G ++ +R+ + FAFV F+T+E AT
Sbjct: 246 PSRILFCGNLSYTTTEEL-LKAHFQHCGEIIKIRMATFEDSGKCKGFAFVDFKTEEGATN 304
Query: 116 ALESTDRSKLVDRVISVEY 134
AL+ K+ R + +EY
Sbjct: 305 ALKDKACRKIAMRPLRMEY 323
>gi|348531623|ref|XP_003453308.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Oreochromis niloticus]
Length = 535
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 286 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADP---IEDPDPEVMAK---VKVL 339
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AF+ FE +E A KAL + L
Sbjct: 340 FVRNLASTVTEEI-LEKTFSQHGKLERVKKLKDYAFIHFEERESAVKALTDLNGKDLEGE 398
Query: 129 VISVEYALKDDSERDDR 145
I + +A D +R +R
Sbjct: 399 HIEIVFAKPPDQKRKER 415
>gi|357516359|ref|XP_003628468.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
gi|355522490|gb|AET02944.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
Length = 273
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 18/158 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR---------HRDGSKSM 59
G+AFV FED +DA DAIRG D + +D RL VE A G RG H +G
Sbjct: 19 GYAFVEFEDVQDAEDAIRGRDG--YDFDGHRLRVEAAHGGRGNSSSRDRYSSHSNGRGGR 76
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATK 115
R ++ ++N P +D+K H G+V ++ R V + ++
Sbjct: 77 GVSRRSEYRVIVNGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKY 136
Query: 116 ALESTDRSKLVDRVISVEYALKD-DSERDDRYDSPRRG 152
A++ D S+ + +++ DS RD R SP RG
Sbjct: 137 AIKKLDDSEFRNAFSKSYVRVREYDSRRDSR--SPGRG 172
>gi|281210217|gb|EFA84385.1| CCHC-type Zn finger-containing protein [Polysphondylium pallidum
PN500]
Length = 274
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 43/65 (66%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 137
RER+I+ HF YG + H+++++ F F+++ +++ A +A+ S+ R+ + R I VE +
Sbjct: 13 AREREIEDHFGRYGRISHIQMKKGFCFIEYSSRDAADEAINSSHRTNFLGRSIVVEKSHS 72
Query: 138 DDSER 142
+ ++R
Sbjct: 73 NGAKR 77
>gi|125543223|gb|EAY89362.1| hypothetical protein OsI_10866 [Oryza sativa Indica Group]
Length = 324
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 90/198 (45%), Gaps = 20/198 (10%)
Query: 55 GSKSMAN---QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFA 103
GS+S+ + + P L+V R +RD+++HF G V+ I R F
Sbjct: 6 GSRSVDSSDVENPGNNLYVTGLS-ARVTDRDLEKHFSAEGEVIDASIVLDPWTRESRGFG 64
Query: 104 FVQFETQEEATKALESTDRSKLVDRVISVEYAL--KDDSERDDRYDSPRRGGYGRHSPYG 161
FV T +EA ++ DRS L RVI+VE A + + RY + Y
Sbjct: 65 FVTMATVKEADLCIKYLDRSVLEGRVITVEKAKRRRGRTPTPGRYLGTKSSCVTPARRYS 124
Query: 162 RSPSPA----YRRRPSPDYGRGRSPAYDRYNGPVYDQRRS-PDHGRHRSPVPVYDRRRSP 216
S SP Y R SP+ R SP R + Y++RRS + R RS P RR
Sbjct: 125 PSYSPVERDRYSSRYSPERERSYSPYGRRRSYSPYNRRRSYSPYERRRSYSPHERRRSYS 184
Query: 217 DYGRNRSPNFGRYRSRSP 234
YGR+ SP +GR RS SP
Sbjct: 185 PYGRSPSP-YGRRRSYSP 201
>gi|389584162|dbj|GAB66895.1| splicing factor arginine/serine-rich 1 [Plasmodium cynomolgi strain
B]
Length = 316
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 29/166 (17%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
A FAF+ FED RDAADAI+ D FG ++ R+ V + + G++ R K+
Sbjct: 46 AAFAFIEFEDARDAADAIKEKDGCDFGGNKLRVEVPFNARDNGKYNSRGGRGMMGRGMKS 105
Query: 68 -----LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALE--- 118
+ ++ P+ +D+K H G H + +N V F +E+ +A+E
Sbjct: 106 RRGRYVVEVSGLPLSGSWQDLKDHLREAGECGHADVFKNGLGEVSFFHKEDMLEAIEKFN 165
Query: 119 -------STDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRH 157
++SK+ R V + +D GGYGR+
Sbjct: 166 GSTFRSHEGEKSKITIREKKVSWHRED-------------GGYGRY 198
>gi|396471523|ref|XP_003838892.1| hypothetical protein LEMA_P025650.1 [Leptosphaeria maculans JN3]
gi|312215461|emb|CBX95413.1| hypothetical protein LEMA_P025650.1 [Leptosphaeria maculans JN3]
Length = 490
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 17/141 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA----RGERGRHRDGSKSMANQR- 63
GF +V F DAA A + + D R L+V+++ + + G+ D + ++R
Sbjct: 276 GFGYVEFATSADAAKAQAEMHQ--YELDGRPLNVDFSTPRQKPDAGKTNDRANKYGDKRS 333
Query: 64 -PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEAT 114
P+ TLF+ N T + I+ F YGN+ V + + F +V F +QEEAT
Sbjct: 334 APSNTLFLGNLSFDCTNDS-IQEIFAEYGNITRVSLPTDRDTGSIKGFGYVDFGSQEEAT 392
Query: 115 KALESTDRSKLVDRVISVEYA 135
AL++ + + R I ++YA
Sbjct: 393 AALDALNGQDIAGRNIRIDYA 413
>gi|380470898|emb|CCF47532.1| RNA recognition domain-containing protein containing protein
[Colletotrichum higginsianum]
Length = 532
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 88/195 (45%), Gaps = 22/195 (11%)
Query: 55 GSKSMANQRPTKTL--FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEE 112
GS+S+++ RP + F N R +RD+ F YG + + ++ + FVQ+ + E+
Sbjct: 55 GSRSLSSGRPDGAIDFFSGNLSSERVSKRDVFDIFHKYGRLAQISLKSAYGFVQYHSLED 114
Query: 113 ATKALESTDRSKLVDRVISVEYA-LKDDSERDDRYDSPRRGGYGRHSPYGRSP------S 165
A A+++ ++ R I +E + + + ++R SP RGG G GR S
Sbjct: 115 AQAAMDNLQGIEIKGRKIHLEISRAQKKKDGNERARSPDRGGRGGARQSGRQDRQDAGNS 174
Query: 166 PAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 225
RR DY R+ R G R HGR R DR R GR+RSP
Sbjct: 175 HQDSRRNRDDYRPSRNSPSRRNGG----HAREDSHGRERHHYDAQDRSR----GRSRSPQ 226
Query: 226 -FGR----YRSRSPV 235
+GR YR R+P
Sbjct: 227 GYGRQKDAYRRRTPT 241
>gi|82540657|ref|XP_724630.1| splicing factor 1 [Plasmodium yoelii yoelii 17XNL]
gi|23479337|gb|EAA16195.1| splicing factor, arginine/serine-rich 1 [Plasmodium yoelii yoelii]
Length = 309
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSM----ANQR 63
A FAF+ FED RDAADAI+ D FG ++ R+ V + + G++ + M + R
Sbjct: 46 AAFAFIEFEDARDAADAIKEKDGCDFGGNKLRVEVPFNARDNGKYNSRGRGMMGRGSKSR 105
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDR 122
+ + ++ P+ +D+K H G H + +N V F +E+ +A+E +
Sbjct: 106 RGRYVVEVSGLPLSGSWQDLKDHLREAGECGHADVFKNGTGEVSFFHKEDMLEAIEKFNG 165
Query: 123 SKL 125
S
Sbjct: 166 STF 168
>gi|116192351|ref|XP_001221988.1| hypothetical protein CHGG_05893 [Chaetomium globosum CBS 148.51]
gi|88181806|gb|EAQ89274.1| hypothetical protein CHGG_05893 [Chaetomium globosum CBS 148.51]
Length = 361
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 17/137 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSV--EWARGERGRHRDGSKSMANQRPTK 66
GF FV FE + A + N F + RR + R R RHR+ + PT
Sbjct: 178 GFGFVSFETAEELQLACEAV-NGSFWHGRRITCIPRTEQREGRSRHRN-----SPSEPTA 231
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALE 118
LF+ N P T + ++ R F+ GNV VR+ R FA F + E A A +
Sbjct: 232 QLFIGNI-PYETTDAELNRIFQGMGNVKDVRVAVDRTTGWPRGFAHADFPSVEAAIDAKQ 290
Query: 119 STDRSKLVDRVISVEYA 135
+ +KL DR++ +++A
Sbjct: 291 RLEGAKLNDRLLRIDFA 307
>gi|326517573|dbj|BAK03705.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 372
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 32/192 (16%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF FV + + A A + L + F D +L+V WA +G S S + KT+
Sbjct: 136 GFLFVEYYNHACADYARQKLSSPDFKVDGSQLTVSWAE-PKGSSSSSSDSSSPAAQVKTI 194
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTD 121
+V N P + +K FE +G V + + +R+F FV F + A KA++ ++
Sbjct: 195 YVKNL-PENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 253
Query: 122 RSKLVDRVISVEYALKDDSERDDR---------YDSPRRGGY--------------GRHS 158
+ ++ +V+ V A ++ D Y P GGY +
Sbjct: 254 KYEIDGQVLEVSMAKPLSDKKPDHSFKPGGAPSYPLPPYGGYMGDPYGAYGGGPGFNQPM 313
Query: 159 PYGRSPSPAYRR 170
YGR P+PA R
Sbjct: 314 IYGRGPAPAGMR 325
>gi|425767261|gb|EKV05835.1| Pre-RNA splicing factor Srp2, putative [Penicillium digitatum
PHI26]
gi|425780059|gb|EKV18081.1| Pre-RNA splicing factor Srp2, putative [Penicillium digitatum Pd1]
Length = 303
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 105/244 (43%), Gaps = 45/244 (18%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRH--RDGSKSMANQRPTK 66
GF F+ ++D DA D + F +R L+V++ARG R + + A RP +
Sbjct: 43 GFGFIEYDDQLDARDIVPAFHGSDFKGER--LTVQFARGPRRKEAFQGPPDRNALPRPRR 100
Query: 67 TLFVINFDPI-RTRERDIKRHFEPYG-NVLHVRIRRNFA--FVQFETQEEATKALESTDR 122
T+F + + T +D+K G +V++ R FV+FET + A+E D+
Sbjct: 101 TMFRMQISGLPETSWQDLKDFARQSGLDVVYSETGREQGRGFVEFETASDLKTAVEKLDQ 160
Query: 123 SKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAY-----RRRPSPDYG 177
+ V+S +++ ER P R Y SP R P PA RR P P
Sbjct: 161 REFKGSVVSCVADIQNFEER------PVRDPYRSRSP-PRRPYPATMEEYDRRIPPP--- 210
Query: 178 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRN----RSPNFGRYRSRS 233
RG SP DH R RSP+P+ RR P Y R+ R+P R
Sbjct: 211 RGYSPR---------------DHYRERSPIPI---RRDPYYERDGYARRTPPRPRMEDYP 252
Query: 234 PVRR 237
P RR
Sbjct: 253 PPRR 256
>gi|71745456|ref|XP_827358.1| poly(A)-binding protein 1 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|4104919|gb|AAD13337.1| poly(A) binding protein I [Trypanosoma brucei]
gi|70831523|gb|EAN77028.1| poly(A)-binding protein 1 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|261331563|emb|CBH14557.1| PABP2 [Trypanosoma brucei gambiense DAL972]
Length = 555
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 16/155 (10%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDN--IPFGYDRRRLSV--EWARGERGRHRDGSKSMANQR 63
GF +V + AA A+ LD+ P + +LSV +R ER R R+ + Q+
Sbjct: 224 VGFGYVAYATHEAAAKAVEELDDKESPLAKEGMKLSVCRFRSREERKRERERLRRERQQQ 283
Query: 64 PTK--TLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEA 113
+K L+V NFD T ER +K F+P+G + V ++ R F FV F+ Q A
Sbjct: 284 HSKYPNLYVKNFDDTVTSER-LKALFDPFGETVSVSVMMDKATKVSRCFGFVSFKEQSSA 342
Query: 114 TKALESTDRSK-LVDRVISVEYALKDDSERDDRYD 147
+A++ S L R + V YAL+ D+ R D
Sbjct: 343 AQAIQELHGSTALGPRPLFVSYALRKDARRQTLED 377
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 18/120 (15%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+A + +E + A DA+R L+ + D ++VE R + + K N L
Sbjct: 137 GYARISYEKEESAVDAVRELNGV--SIDDCAITVE--RYQPHHREEQLKQYTN------L 186
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTD 121
+V N DP E+ +K F P+G V ++R F +V + T E A KA+E D
Sbjct: 187 YVKNLDPSVDDEK-LKEVFSPFGEVTSAKVRDLAGRPTVGFGYVAYATHEAAAKAVEELD 245
>gi|401888739|gb|EJT52690.1| rRNA primary transcript binding protein [Trichosporon asahii var.
asahii CBS 2479]
Length = 1040
Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/146 (24%), Positives = 70/146 (47%), Gaps = 16/146 (10%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-T 67
G+ FV F+ ++A A+ GL+ F D + ++A+ + K+ + + TK T
Sbjct: 855 GYGFVGFKTKKEAQAALAGLEG--FKIDGHAIEAKFAQRGQDEVEKKHKTKSEEGKTKGT 912
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------------RRNFAFVQFETQEEAT 114
++ P ++D++ F YG + +R+ R FAF++F T EA
Sbjct: 913 KLLVKNLPFEATKKDVRALFSAYGTLKSLRVPRKSTMSATGAQSTRGFAFLEFTTHAEAQ 972
Query: 115 KALESTDRSKLVDRVISVEYALKDDS 140
+A+++ + L+ R + E+A +DS
Sbjct: 973 RAMDALKHTHLLGRHLVTEWAKDEDS 998
>gi|440636620|gb|ELR06539.1| hypothetical protein GMDG_02173 [Geomyces destructans 20631-21]
Length = 841
Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 19/149 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA-RG----ERGRHRDGSKSMANQR 63
GF F+ F A A++ +D D L+++ + RG E R D +K +A +R
Sbjct: 661 GFGFLEFRSKAQAQAALKVMDG--HSLDGHNLTIKASHRGVDAAEERRKEDRAKKLAGKR 718
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKA 116
T ++ P ++DI+ F YG + VR+ R FAF +F T EA A
Sbjct: 719 ---TKIIVKNLPFEASKKDIRTLFGTYGQLRSVRVPKKFDNTARGFAFAEFVTAREAENA 775
Query: 117 LESTDRSKLVDRVISVEYALKD--DSERD 143
+E+ + L+ R + +E+A +D D+E +
Sbjct: 776 IEALKDTHLLGRRLVIEFAAEDAVDAEEE 804
>gi|302759915|ref|XP_002963380.1| hypothetical protein SELMODRAFT_80254 [Selaginella moellendorffii]
gi|300168648|gb|EFJ35251.1| hypothetical protein SELMODRAFT_80254 [Selaginella moellendorffii]
Length = 161
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 34/160 (21%)
Query: 49 RGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RR 100
RG RD ++ P L+V R E+D++ +F G V+ R+ R
Sbjct: 6 RGDGRDKDDEISCN-PGNNLYVTGLS-TRVTEKDLEDYFSKEGKVVECRLVVDPRSHESR 63
Query: 101 NFAFVQFETQEEATKALESTDRSKLVDRVISVEYA-------------LKDDSERDDRYD 147
F FV E+ ++A + ++ S L R+I+VE A L SER RY
Sbjct: 64 GFGFVALESLDDAERCIKRLHHSNLEGRIITVEKARRSRARTPTPGKYLGSRSERSPRY- 122
Query: 148 SPRRGGYGR-HSP--------YGRSPSPAYRRRPSPDYGR 178
SP RG Y R +SP Y RSP P+YRR P Y R
Sbjct: 123 SPYRGDYDRSYSPPPYRHRREYDRSP-PSYRRSPPSYYHR 161
>gi|198418309|ref|XP_002123977.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein R
[Ciona intestinalis]
Length = 581
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ + D + A+ A R L ++ +SV+WA + S + ++ K L
Sbjct: 287 GFCFLEYTDHKAASQARRRLSSVKVKAFNNTVSVDWAD----PVEEPSDEIMSK--VKVL 340
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
++ N ++ E + F YG V V+ +++AFV F+ ++ A KALE + L
Sbjct: 341 YIKNLS-MKATEEIVMATFSAYGEVERVKKIKDYAFVHFKERDNAMKALEELNGLNLEGE 399
Query: 129 VISVEYALKDDSERDDR 145
I + A D ++ +R
Sbjct: 400 AIEISLAKPVDKKKKER 416
>gi|432888609|ref|XP_004075076.1| PREDICTED: RNA-binding protein 4B-like [Oryzias latipes]
Length = 346
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+FV N P E +IK FE YG V I +NFAFV E ++ ATKA+++ + L
Sbjct: 4 IFVGNL-PQEATEEEIKALFEEYGTVTECDIVKNFAFVHMEDRKAATKAIKNLHQHSLHG 62
Query: 128 RVISVE 133
I+VE
Sbjct: 63 TAINVE 68
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 17/124 (13%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
FAFV+ ED + A AI+ L ++VE + G+ N P K +
Sbjct: 37 FAFVHMEDRKAATKAIKNLHQ--HSLHGTAINVEASHGK------------NFGPVK-IH 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N + + + +++ FE YG V + +NFAFV +EA A++ D S ++
Sbjct: 82 VANVE--KGCDEELRALFEEYGTVSECAVVKNFAFVHMPNYDEAMDAIKELDNSDFQEKR 139
Query: 130 ISVE 133
I V+
Sbjct: 140 IHVQ 143
>gi|224106315|ref|XP_002314126.1| predicted protein [Populus trichocarpa]
gi|222850534|gb|EEE88081.1| predicted protein [Populus trichocarpa]
Length = 316
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEA 113
+ P L+V P R ++++++HF G V+ V + R F FV T EEA
Sbjct: 48 ENPGNNLYVTGLSP-RITKKELEKHFSAEGTVIDVHLVVDPWTRESRGFGFVTMSTVEEA 106
Query: 114 TKALESTDRSKLVDRVISVEYA 135
++ DRS L RVI+VE A
Sbjct: 107 DHCIKYLDRSVLEGRVITVEKA 128
>gi|18605943|gb|AAH22960.1| BC022960 protein, partial [Mus musculus]
Length = 368
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 121 DRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGR--HSPYGRSPSPAYRRRPSPDYGR 178
DRS R S +YA +R +Y R Y R S Y R S Y R SP Y R
Sbjct: 10 DRSSQYARDRSSQYAR----DRSSQYARDRSSQYARDRSSQYARDRSSQYARDRSPQYAR 65
Query: 179 GRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRS 231
RS Y R P Y + RSP + R RS P Y R RS Y R+RSP + R RS
Sbjct: 66 DRSSHYARDRSPHYARDRSPHYARDRS--PHYARDRSSHYARDRSPQYARDRS 116
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 156 RHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRS 215
R S Y R SP Y R SP Y R RSP Y R Y + RSP + R RS Y R RS
Sbjct: 67 RSSHYARDRSPHYARDRSPHYARDRSPHYARDRSSHYARDRSPQYARDRS--SQYARDRS 124
Query: 216 PDYGRNRSPNFGRYRS 231
Y R+RS ++ R RS
Sbjct: 125 SHYARDRSSHYARDRS 140
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 160 YGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSP------VPVYDRR 213
Y R S Y R S Y R RS Y R Y + RS + R RS P Y R
Sbjct: 7 YARDRSSQYARDRSSQYARDRSSQYARDRSSQYARDRSSQYARDRSSQYARDRSPQYARD 66
Query: 214 RSPDYGRNRSPNFGRYRS 231
RS Y R+RSP++ R RS
Sbjct: 67 RSSHYARDRSPHYARDRS 84
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 165 SPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 224
SP Y R S Y R RS Y R Y + RS + R RS Y R RS Y R+RSP
Sbjct: 4 SPQYARDRSSQYARDRSSQYARDRSSQYARDRSSQYARDRS--SQYARDRSSQYARDRSP 61
Query: 225 NFGRYRS 231
+ R RS
Sbjct: 62 QYARDRS 68
>gi|429859384|gb|ELA34169.1| pre-rRNA processing protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 866
Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 17/138 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR-----GERGRHRDGSKSMANQR 63
GF FV F+ A+ A++ +D F D L+V+ + E R D ++ A QR
Sbjct: 684 GFGFVVFKTKEQASTALKSMDG--FVLDGHTLAVKASHKGQDAAEERRREDKARKAAGQR 741
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKA 116
T VI P ++DI+ F YG + VR+ R FAF +F T EA A
Sbjct: 742 ---TKIVIKNLPFEATKKDIRTLFSTYGQLRAVRLPKKFGNSTRGFAFAEFVTPREAENA 798
Query: 117 LESTDRSKLVDRVISVEY 134
L + + L+ R + ++Y
Sbjct: 799 LNALRDTHLLGRKLVLDY 816
>gi|449528507|ref|XP_004171245.1| PREDICTED: arginine/serine-rich-splicing factor RSP40-like,
partial [Cucumis sativus]
Length = 73
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 28/39 (71%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 46
+GFAF+Y ED+RDA DAIR LD FG RRL VEW +
Sbjct: 35 SGFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWTK 73
>gi|320586970|gb|EFW99633.1| nucleic acid-binding protein [Grosmannia clavigera kw1407]
Length = 314
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 12/135 (8%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV+F A A++ D F + RR + E R R S + + + PT +L
Sbjct: 160 GFAFVWFNTAEAMAKALKEADG-SFWHGRRIIVQE--RTARREAGSPSAATSTRSPTTSL 216
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALEST 120
+V N P T + D+ + F V VR+ R FA FET ++ATKA E
Sbjct: 217 YVGNL-PYETTDADLNQLFVGLEGVKSVRVAVDRSTGWPRGFAHTDFETVDQATKAFEHL 275
Query: 121 DRSKLVDRVISVEYA 135
+ R + ++YA
Sbjct: 276 AGRTVGTRQLRIDYA 290
>gi|167392627|ref|XP_001740231.1| poly(A) binding protein [Entamoeba dispar SAW760]
gi|165895743|gb|EDR23363.1| poly(A) binding protein, putative [Entamoeba dispar SAW760]
Length = 289
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 9/79 (11%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKA 116
KTL+V + D + E +K F PYGNV++ I+++ +AF++++ E+A KA
Sbjct: 1 MKTLYVSDVD-VSIDENKLKELFSPYGNVINSTIKKSSKGTNDFYYAFIEYDRPEDAAKA 59
Query: 117 LESTDRSKLVDRVISVEYA 135
L D+ +L + ++V++A
Sbjct: 60 LHEMDQHELAGKRLNVKFA 78
>gi|218200241|gb|EEC82668.1| hypothetical protein OsI_27298 [Oryza sativa Indica Group]
Length = 321
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN------Q 62
GFAFV FED RDA DAIRG D + +D RL VE A G RG + S
Sbjct: 112 GFAFVEFEDPRDAEDAIRGRDG--YNFDGNRLRVELAHGGRGNSSSFNNSGGGGRRGGVS 169
Query: 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQE 111
R T+ ++ P +D+K H G+V+ ++ + + E
Sbjct: 170 RHTEYRVLVTGLPSSASWQDLKDHMRNAGDVVTLKCTVRVVIRKLDDSE 218
>gi|221057546|ref|XP_002261281.1| Polyadenylate binding protein [Plasmodium knowlesi strain H]
gi|194247286|emb|CAQ40686.1| Polyadenylate binding protein, putative [Plasmodium knowlesi strain
H]
Length = 392
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 77/187 (41%), Gaps = 30/187 (16%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR----P 64
G+ FV + D A AI ++ VE G+R + S S N + P
Sbjct: 159 GYGFVVYTDPHSATMAISNMN-----------KVEVHAGKRLKVLLKSSSNENNKKKIKP 207
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKAL 117
T+FV + P ++D+KRHF YGN+L I+R + F+ FE Q+ A A+
Sbjct: 208 GCTIFVF-YLPNDWSDKDLKRHFSHYGNILGATIKRETNGKSRGYGFINFENQQSAINAV 266
Query: 118 ESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRP----S 173
+ ++ + V ++ +Y + R G ++ YG P S
Sbjct: 267 AGMNGFNAGNKYLKVSIKKGEEQYLAPQYLNIDRMG---NNSYGSPSPPPPPMTCHGNDS 323
Query: 174 PDYGRGR 180
P++G G
Sbjct: 324 PNFGSGE 330
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 52 HRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN---FAFVQFE 108
H + + N + ++FV NF P E DI+ +F +G + +V I ++ +A++QF
Sbjct: 4 HFENKMNWNNNFQSNSIFVYNF-PTEWTENDIQNNFMIFGTINNVIIDKDINMYAYIQFH 62
Query: 109 TQEEATKALESTDRSKLVDRVISV 132
E KA+E + ++ +V+ V
Sbjct: 63 DGEACQKAIEVMNGKEVSGKVLKV 86
>gi|302843097|ref|XP_002953091.1| hypothetical protein VOLCADRAFT_63158 [Volvox carteri f.
nagariensis]
gi|300261802|gb|EFJ46013.1| hypothetical protein VOLCADRAFT_63158 [Volvox carteri f.
nagariensis]
Length = 762
Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 18/144 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+ FV + + AA I+ L D +L ++ +RG KS A + L
Sbjct: 605 GYGFVEVDSEAVAAAVIKKLQGSVL--DGHKLVLQISRGR--------KSAAAGAGSTKL 654
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTD 121
V N ++DI+ F P+G++ R+ R FAFV+F T++EA ALE
Sbjct: 655 VVRNL-AFEATKKDIQGLFNPFGHLKSCRLPKKFDGSHRGFAFVEFVTKQEAKNALEGLA 713
Query: 122 RSKLVDRVISVEYALKDDSERDDR 145
+ L R + VEYA +DD+ D R
Sbjct: 714 GTHLYGRRLVVEYAREDDTLDDIR 737
>gi|432944515|ref|XP_004083418.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like, partial
[Oryzias latipes]
Length = 469
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ FED + AA A R L + ++VEWA + MA K L
Sbjct: 294 GFCFLEFEDHKTAAQARRRLMSGKVKVWGILVTVEWADP---IEDPDPEVMAK---VKVL 347
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AF+ FE +E A KAL+ + +L
Sbjct: 348 FVRNLANSVTEEI-LEKSFSAFGKLERVKKLKDYAFIHFEEREGAVKALDEMNGKELEGE 406
Query: 129 VISVEYALKDDSERDDR 145
I + +A D +R +R
Sbjct: 407 PIEIVFAKPPDQKRKER 423
>gi|357516353|ref|XP_003628465.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
gi|355522487|gb|AET02941.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
Length = 326
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 18/158 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR---------HRDGSKSM 59
G+AFV FED +DA DAIRG D + +D RL VE A G RG H +G
Sbjct: 72 GYAFVEFEDVQDAEDAIRGRDG--YDFDGHRLRVEAAHGGRGNSSSRDRYSSHSNGRGGR 129
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATK 115
R ++ ++N P +D+K H G+V ++ R V + ++
Sbjct: 130 GVSRRSEYRVIVNGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKY 189
Query: 116 ALESTDRSKLVDRVISVEYALKD-DSERDDRYDSPRRG 152
A++ D S+ + +++ DS RD R SP RG
Sbjct: 190 AIKKLDDSEFRNAFSKSYVRVREYDSRRDSR--SPGRG 225
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR-----NFAFVQFETQEEATKALES 119
++T++V N P RER+++ F YG++ H+ ++ +AFV+FE ++A A+
Sbjct: 32 SRTVYVGNL-PGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDVQDAEDAIRG 90
Query: 120 TDRSKLVDRVISVEYAL--KDDSERDDRYDS 148
D + VE A + +S DRY S
Sbjct: 91 RDGYDFDGHRLRVEAAHGGRGNSSSRDRYSS 121
>gi|67482201|ref|XP_656450.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56473655|gb|EAL51070.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|449703568|gb|EMD43997.1| RNA recognition domain containing protein [Entamoeba histolytica
KU27]
Length = 289
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 9/79 (11%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKA 116
KTL+V + D + E +K F PYGNV++ I+++ +AF++++ E+A KA
Sbjct: 1 MKTLYVSDVD-VSIDENKLKELFSPYGNVINSTIKKSSKGTNDFYYAFIEYDRPEDAAKA 59
Query: 117 LESTDRSKLVDRVISVEYA 135
L D+ +L + ++V++A
Sbjct: 60 LREMDQHELAGKRLNVKFA 78
>gi|449497953|ref|XP_004174289.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q [Taeniopygia guttata]
Length = 492
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 149 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADP---IEDPDPEVMAK---VKVL 202
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AF+ F+ ++ A KA+E + L
Sbjct: 203 FVRNLANTVTEEI-LEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGE 261
Query: 129 VISVEYALKDDSERDDR 145
I + +A D +R +R
Sbjct: 262 NIEIVFAKPPDQKRKER 278
>gi|325192592|emb|CCA27020.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 347
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG---ERGRHRDGSKSMANQRPT 65
G+ FV F DD AA+A+R +D+ RR+ V +A R ++ N +
Sbjct: 36 GYGFVNFRDDHSAAEALREMDDTEL--KGRRIRVAYANSGSYSTTRRERPEQARENGPVS 93
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNF-------AFVQFETQEEATKA 116
+ LFV N P R R+++ FE YG V +V+I AFV F T+ EA A
Sbjct: 94 RNLFVANIPP-NVRLRELEEFFERYGKVQNVKILPQVKGNVTMSAFVDFSTEAEAESA 150
>gi|224613218|gb|ACN60188.1| Heterogeneous nuclear ribonucleoprotein Q [Salmo salar]
Length = 583
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA S+ MA K L
Sbjct: 242 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNAVTVEWADP---IEEPDSEVMAK---VKVL 295
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AF+ F+ ++ A KAL + L
Sbjct: 296 FVRNLANSVTEEI-LEKSFGQFGRLERVKKLKDYAFIHFDERDSAVKALAEMNGKDLEGE 354
Query: 129 VISVEYALKDDSERDDR 145
I + +A D +R +R
Sbjct: 355 HIDIVFAKPPDQKRKER 371
>gi|367018676|ref|XP_003658623.1| hypothetical protein MYCTH_2294614 [Myceliophthora thermophila ATCC
42464]
gi|347005890|gb|AEO53378.1| hypothetical protein MYCTH_2294614 [Myceliophthora thermophila ATCC
42464]
Length = 831
Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 17/149 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR-----GERGRHRDGSKSMANQR 63
GF F F A A++ +D + D +LSV+ + E R D +K A QR
Sbjct: 650 GFGFCAFRTKEQAQAALKVMDG--YVLDAHKLSVKASHRGHDAAEERRREDLAKKAAAQR 707
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKA 116
T VI P ++D++ F YG ++ +R+ R FAF +F T +EA A
Sbjct: 708 ---TKIVIKNLPFEATKKDVRALFSAYGKLVALRLPKKFNSMSRGFAFAEFATAKEALNA 764
Query: 117 LESTDRSKLVDRVISVEYALKDDSERDDR 145
L + + L+ R + +++A D+ + +++
Sbjct: 765 LTALKDTHLLGRRLVLDFAEADEVDPEEQ 793
>gi|346973867|gb|EGY17319.1| multiple RNA-binding domain-containing protein [Verticillium
dahliae VdLs.17]
Length = 866
Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR-----GERGRHRDGSKSMANQR 63
GF FV F A AI+ +D D LSV + E R D +K MA QR
Sbjct: 683 GFGFVAFRSSEAAQAAIKAMDGQVL--DAHTLSVRASHRGQDAAEERRREDKAKMMAGQR 740
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKA 116
T V+ P +++++ F YG + VR+ R FAF +F T +EA A
Sbjct: 741 ---TKIVVKNLPFEISKKELRALFATYGTLRAVRLPKKMGQSTRGFAFAEFSTPKEAQNA 797
Query: 117 LESTDRSKLVDRVISVEY 134
+++ + L+ R + ++Y
Sbjct: 798 IDALQHTHLLGRRLVLDY 815
Score = 37.4 bits (85), Expect = 5.4, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATK 115
R T LF N E D++ HFE YG V V I + FA+V F + + A
Sbjct: 337 RQTARLFARNL-AFSVSEDDLRDHFEQYGEVEEVHIPVAKSGTSKGFAYVSFASADAAVT 395
Query: 116 ALESTDRSKLVDRVISVEYALKDDSERDDRY 146
A +S+D R++ V A + D Y
Sbjct: 396 AFQSSDGQTFQGRLLHVLPAAARRDQDMDEY 426
>gi|223648796|gb|ACN11156.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 633
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADP---VDEPDPEIMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AFV FE ++ A KA++ + +L
Sbjct: 344 FVRNLATPVTEEL-LEKTFSQFGKLERVKKLKDYAFVHFEDRDAAVKAMQEMNCKELEGE 402
Query: 129 VISVEYALKDDSERDDR 145
I + A D +R +R
Sbjct: 403 EIEIVLAKPPDKKRKER 419
>gi|57164147|ref|NP_001009255.1| serine/arginine-rich splicing factor 9 [Rattus norvegicus]
gi|92058728|sp|Q5PPI1.1|SRSF9_RAT RecName: Full=Serine/arginine-rich splicing factor 9; AltName:
Full=Splicing factor, arginine/serine-rich 9
gi|56388745|gb|AAH87684.1| Splicing factor, arginine/serine rich 9 [Rattus norvegicus]
gi|149063569|gb|EDM13892.1| splicing factor, arginine/serine rich 9, isoform CRA_b [Rattus
norvegicus]
Length = 221
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
FAFV FED RDA DAI G + +G R R+ A G RG S++ R +
Sbjct: 54 FAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRAYGGRGGWPRASRNGPPTRRSDFRV 113
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 125
+++ P +D+K H G+V + ++++ V++ +E+ AL D +K
Sbjct: 114 LVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 170
>gi|406697498|gb|EKD00757.1| rRNA primary transcript binding protein [Trichosporon asahii var.
asahii CBS 8904]
Length = 1039
Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 36/146 (24%), Positives = 70/146 (47%), Gaps = 16/146 (10%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-T 67
G+ FV F+ ++A A+ GL+ F D + ++A+ + K+ + + TK T
Sbjct: 854 GYGFVGFKTKKEAQAALAGLEG--FKIDGHAIEAKFAQRGQDEVEKEHKTKSEEGKTKGT 911
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------------RRNFAFVQFETQEEAT 114
++ P ++D++ F YG + +R+ R FAF++F T EA
Sbjct: 912 KLLVKNLPFEATKKDVRALFSAYGTLKSLRVPRKSTMSATGAQSTRGFAFLEFTTHAEAQ 971
Query: 115 KALESTDRSKLVDRVISVEYALKDDS 140
+A+++ + L+ R + E+A +DS
Sbjct: 972 RAMDALKHTHLLGRHLVTEWAKDEDS 997
>gi|75334880|sp|Q9LEB4.1|RBP45_NICPL RecName: Full=Polyadenylate-binding protein RBP45;
Short=Poly(A)-binding protein RBP45; AltName:
Full=RNA-binding protein 45; Short=NplRBP45
gi|9663767|emb|CAC01237.1| RNA Binding Protein 45 [Nicotiana plumbaginifolia]
Length = 409
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 68/145 (46%), Gaps = 9/145 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG-----ERGRHRDGSKSMANQR 63
G+ FV F D+ + A+ ++ + R+ + ++ +++ +
Sbjct: 219 GYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESD 278
Query: 64 PTKT-LFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALEST 120
P T +FV DP E +++ F PYG ++HV+I + FVQF T+ A +AL S
Sbjct: 279 PNNTTIFVGGLDPT-VAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGTRASAEQALSSL 337
Query: 121 DRSKLVDRVISVEYALKDDSERDDR 145
+ ++L + I + + S++ D+
Sbjct: 338 NGTQLGGQSIRLSWGRSPSSKQTDQ 362
>gi|310793447|gb|EFQ28908.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 219
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 73/165 (44%), Gaps = 38/165 (23%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRR----------RLSVEWARGER-------GRH 52
F F+Y++D A + N F Y RR R S RGER GR
Sbjct: 19 FCFIYYKDAESVTTASENV-NGTFWYGRRIVAKPQEPRDRTSEPQRRGERANRPPRVGRV 77
Query: 53 RDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAF 104
DGS PT TL+V N ++ + D+ F V VR+ R FA
Sbjct: 78 HDGS-------PTTTLYVGNIS-FQSSDADLNNLFSTLDGVKDVRVAVDRATGWPRGFAH 129
Query: 105 VQFETQEEATKALESTDRSKLVDRVISVEYA---LKDDSERDDRY 146
F + E AT ALES ++++DR + V++A LK +++R DR
Sbjct: 130 ADFVSVEAATAALESLKGARILDRELKVQFAPPSLK-ETDRHDRM 173
>gi|157113456|ref|XP_001657837.1| arginine/serine-rich splicing factor [Aedes aegypti]
gi|108877724|gb|EAT41949.1| AAEL006473-PA [Aedes aegypti]
Length = 237
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 86/185 (46%), Gaps = 29/185 (15%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG---------ERGRHRD---GSK 57
FAFV FED RDA DA++ D + YD RL VE+ RG RG + D G++
Sbjct: 47 FAFVEFEDARDADDAVKARDG--YDYDGYRLRVEFPRGGGPGRYSSSSRGGNSDRGGGAR 104
Query: 58 SMANQRP----TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEE 112
N+ P ++ ++ P +D+K H G+V + ++ V+F E+
Sbjct: 105 DRGNRGPPARRSQFRVMVTGLPASGSWQDLKDHMREAGDVCFADVYKDGTGVVEFLRHED 164
Query: 113 ATKALESTDRSKLVDRVISVEYA-LKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRR 171
A++ D S+ V Y +++DS +D RRGG R RS SP RRR
Sbjct: 165 MKYAIKKLDDSRFRSHEGEVAYIRVREDSTNND----DRRGGEYRD----RSYSPR-RRR 215
Query: 172 PSPDY 176
+P Y
Sbjct: 216 GTPTY 220
>gi|392592864|gb|EIW82190.1| RNA-binding domain-containing protein, partial [Coniophora puteana
RWD-64-598 SS2]
Length = 306
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 52/112 (46%), Gaps = 15/112 (13%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATK 115
PT+ L V IRT+ERD+ F +G V V I R F F++ EEAT+
Sbjct: 82 PTQVLGVFGLS-IRTQERDLDDEFSRFGRVEKVTIVYDQRSDRSRGFGFIKMSAVEEATR 140
Query: 116 ALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPA 167
++ + +L R I V+Y++ DR +P G Y H GR PA
Sbjct: 141 CIQELNGVELNGRRIRVDYSVT------DRPHAPTPGEYMGHRRSGRDTFPA 186
>gi|388582417|gb|EIM22722.1| RNA-binding domain-containing protein [Wallemia sebi CBS 633.66]
Length = 725
Score = 50.1 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 15/143 (10%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+ FV F+++ A DA+ + + D L V++A +RG+ + +M + TK L
Sbjct: 555 GYGFVGFDNEEHAKDALASMQK--YVLDGHSLQVKFA--QRGKDSEPGAAMGQTKTTKML 610
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTD 121
+ P ++DI+ F +G + VR+ R FAF+ F T+ +A A ES
Sbjct: 611 --VKNVPFEASKKDIRELFGMHGQLKSVRLPRKFDRKTRGFAFLDFVTRRDAEIAYESLK 668
Query: 122 RSKLVDRVISVEYALKDDSERDD 144
+ L+ R + +++A DD+ +D
Sbjct: 669 HTHLLGRHLVLQWA--DDAAIND 689
>gi|74192738|dbj|BAE34886.1| unnamed protein product [Mus musculus]
Length = 222
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
FAFV FED RDA DAI G + +G R R+ G RG G+++ R +
Sbjct: 55 FAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGGRGGWPRGARNGPPTRRSDFRV 114
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 125
+++ P +D+K H G+V + ++++ V++ +E+ AL D +K
Sbjct: 115 LVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 171
>gi|451846216|gb|EMD59526.1| hypothetical protein COCSADRAFT_100727 [Cochliobolus sativus
ND90Pr]
Length = 828
Score = 50.1 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 17/147 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRR--RLSVEWA-RGERGRHRDGSKSMANQRPT 65
GF FV F A A+R +D GYD +L ++ + RG ++ AN+ +
Sbjct: 649 GFGFVEFNSPETATAALRAMD----GYDLEGHKLQIKASHRGADAAEERRNEDAANKAAS 704
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALE 118
+ + N P +++++ F PYG + VR+ R F F +F T+ +A A+
Sbjct: 705 TKIIIKNL-PFEASKKEVRALFAPYGQLRSVRVPKKFDASSRGFGFAEFTTKRDAVNAMN 763
Query: 119 STDRSKLVDR--VISVEYALKDDSERD 143
+ + L+ R V++ A DD E++
Sbjct: 764 ALKNTHLLGRRLVLAFAEAESDDPEKE 790
>gi|260948938|ref|XP_002618766.1| hypothetical protein CLUG_02225 [Clavispora lusitaniae ATCC 42720]
gi|238848638|gb|EEQ38102.1| hypothetical protein CLUG_02225 [Clavispora lusitaniae ATCC 42720]
Length = 633
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 14/146 (9%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF FV F+ A AI LD R +L + + GSK +
Sbjct: 456 GFGFVEFKTKEQAEAAISALDGHVLEGHRIQLKI-------SHRKSGSKPQGAKSSKSNK 508
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTD 121
+I P +D+ F YG+V VR+ R FAFV++ +EA A+ +
Sbjct: 509 IIIKNLPFEATRKDVLELFGAYGSVKSVRVPKKFDKSARGFAFVEYTMLKEAENAMNQLE 568
Query: 122 RSKLVDRVISVEYALKDDSERDDRYD 147
L+ R + ++YA K+ +D +
Sbjct: 569 GVHLLGRRLVMQYAEKESDNAEDEIE 594
>gi|57105666|ref|XP_534706.1| PREDICTED: serine/arginine-rich splicing factor 9 isoform 1 [Canis
lupus familiaris]
Length = 221
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
FAFV FED RDA DAI G + +G R R+ G RG G ++ R +
Sbjct: 54 FAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGSRGGWPRGGRNGPPTRRSDFRV 113
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 125
+++ P +D+K H G+V + ++++ V++ +E+ AL D +K
Sbjct: 114 LVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 170
>gi|355718943|gb|AES06437.1| splicing factor, arginine/serine-rich 9 [Mustela putorius furo]
Length = 220
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
FAFV FED RDA DAI G + +G R R+ G RG G ++ R +
Sbjct: 54 FAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGSRGGWPRGGRNGPPTRRSDFRV 113
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 125
+++ P +D+K H G+V + ++++ V++ +E+ AL D +K
Sbjct: 114 LVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 170
>gi|212275376|ref|NP_001130564.1| uncharacterized protein LOC100191663 [Zea mays]
gi|194689494|gb|ACF78831.1| unknown [Zea mays]
gi|219887513|gb|ACL54131.1| unknown [Zea mays]
gi|238010456|gb|ACR36263.1| unknown [Zea mays]
gi|413921450|gb|AFW61382.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921451|gb|AFW61383.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921452|gb|AFW61384.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921453|gb|AFW61385.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
Length = 467
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF FV + + A A + L + F D +L+V WA E D S + A KT+
Sbjct: 229 GFLFVEYYNHACADYARQKLSSPNFKVDGSQLTVSWA--EPKGSTDASSAAAQ---VKTI 283
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTD 121
+V N P + IK F+ +G V + + +R+F FV F + A KA++ ++
Sbjct: 284 YVKNL-PENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 342
Query: 122 RSKLVDRVISVEYA 135
+ ++ +V+ V A
Sbjct: 343 KYEIDGQVLEVSMA 356
>gi|357511267|ref|XP_003625922.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
gi|355500937|gb|AES82140.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
Length = 401
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 18/158 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR---------HRDGSKSM 59
G+AFV FED +DA DAIRG D + +D RL VE A G RG H +G
Sbjct: 147 GYAFVEFEDVQDAEDAIRGRDG--YDFDGHRLRVEAAHGGRGNSSSRDRYSSHSNGRGGR 204
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATK 115
R ++ ++N P +D+K H G+V ++ R V + ++
Sbjct: 205 GVSRRSEYRVIVNGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKY 264
Query: 116 ALESTDRSKLVDRVISVEYALKD-DSERDDRYDSPRRG 152
A++ D S+ + +++ DS RD R SP RG
Sbjct: 265 AIKKLDDSEFRNAFSKSYVRVREYDSRRDSR--SPGRG 300
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR-----NFAFVQFETQEEATKALES 119
++T++V N P RER+++ F YG++ H+ ++ +AFV+FE ++A A+
Sbjct: 107 SRTVYVGNL-PGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDVQDAEDAIRG 165
Query: 120 TDRSKLVDRVISVEYAL--KDDSERDDRYDS 148
D + VE A + +S DRY S
Sbjct: 166 RDGYDFDGHRLRVEAAHGGRGNSSSRDRYSS 196
>gi|301618964|ref|XP_002938875.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Xenopus
(Silurana) tropicalis]
Length = 532
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 189 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWA---DPVEEPDPEIMAK---VKVL 242
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AFV F+ ++ A +A++ + ++L
Sbjct: 243 FVRNLSSTVTEEI-LEKAFSVFGKLERVKKLKDYAFVHFDERDAAVRAMDEMNGTELEGE 301
Query: 129 VISVEYALKDDSERDDR 145
I + A D +R +R
Sbjct: 302 EIEIVLAKPPDKKRKER 318
>gi|89272515|emb|CAJ81560.1| heterogeneous nuclear ribonucleoprotein R [Xenopus (Silurana)
tropicalis]
Length = 535
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 192 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWA---DPVEEPDPEIMAK---VKVL 245
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AFV F+ ++ A +A++ + ++L
Sbjct: 246 FVRNLSSTVTEEI-LEKAFSVFGKLERVKKLKDYAFVHFDERDAAVRAMDEMNGTELEGE 304
Query: 129 VISVEYALKDDSERDDR 145
I + A D +R +R
Sbjct: 305 EIEIVLAKPPDKKRKER 321
>gi|12860555|dbj|BAB31986.1| unnamed protein product [Mus musculus]
Length = 190
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
FAFV FED RDA DAI G + +G R R+ G RG G+++ R +
Sbjct: 23 FAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGGRGGWPRGARNGPPTRRSDFRV 82
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 125
+++ P +D+K H G+V + ++++ V++ +E+ AL D +K
Sbjct: 83 LVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 139
>gi|432936836|ref|XP_004082303.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Oryzias
latipes]
Length = 542
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 287 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADP---IEDPDPEVMAK---VKVL 340
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AF+ FE ++ A KAL + L
Sbjct: 341 FVRNLASAVTEEL-LEKTFSQFGKLERVKKLKDYAFIHFEERDSAVKALGDLNGKDLEGE 399
Query: 129 VISVEYALKDDSERDDR 145
I + +A D +R +R
Sbjct: 400 HIEIVFAKPPDQKRKER 416
>gi|13385016|ref|NP_079849.1| serine/arginine-rich splicing factor 9 [Mus musculus]
gi|66774167|sp|Q9D0B0.1|SRSF9_MOUSE RecName: Full=Serine/arginine-rich splicing factor 9; AltName:
Full=Splicing factor, arginine/serine-rich 9
gi|12847866|dbj|BAB27740.1| unnamed protein product [Mus musculus]
gi|15126569|gb|AAH12217.1| Splicing factor, arginine/serine rich 9 [Mus musculus]
gi|148687919|gb|EDL19866.1| splicing factor, arginine/serine rich 9, isoform CRA_b [Mus
musculus]
Length = 222
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
FAFV FED RDA DAI G + +G R R+ G RG G+++ R +
Sbjct: 55 FAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGGRGGWPRGARNGPPTRRSDFRV 114
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 125
+++ P +D+K H G+V + ++++ V++ +E+ AL D +K
Sbjct: 115 LVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 171
>gi|340517170|gb|EGR47415.1| predicted protein [Trichoderma reesei QM6a]
Length = 797
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR-----GERGRHRDGSKSMANQR 63
GF FV F A A++ +D + D L V+ + E R D +K A QR
Sbjct: 615 GFGFVEFRSKDQAQAALKAMDG--YVLDGHALGVKASHRGHDAAEERRREDAAKKAAAQR 672
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKA 116
T VI P + ++DI+ F YG + VR+ R FAF F T EA A
Sbjct: 673 ---TKIVIKNLPFQATKKDIRTLFGTYGQLRSVRVPKKADYTARGFAFADFVTPREAENA 729
Query: 117 LESTDRSKLVDRVISVEY 134
L + + L+ R + +++
Sbjct: 730 LNALKDTHLLGRRLVLDF 747
>gi|189217790|ref|NP_001121335.1| heterogeneous nuclear ribonucleoprotein R [Xenopus laevis]
gi|171847308|gb|AAI61702.1| LOC100158425 protein [Xenopus laevis]
Length = 511
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 189 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWA---DPVEEPDPEIMAK---VKVL 242
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AFV F+ ++ A +A++ + ++L
Sbjct: 243 FVRNLSSTVT-EEILEKAFSVFGKLERVKKLKDYAFVHFDERDAAVRAMDEMNGAELEGE 301
Query: 129 VISVEYALKDDSERDDR 145
I + A D +R +R
Sbjct: 302 EIEIVLAKPPDKKRKER 318
>gi|413921449|gb|AFW61381.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
Length = 465
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF FV + + A A + L + F D +L+V WA E D S + A KT+
Sbjct: 227 GFLFVEYYNHACADYARQKLSSPNFKVDGSQLTVSWA--EPKGSTDASSAAAQ---VKTI 281
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTD 121
+V N P + IK F+ +G V + + +R+F FV F + A KA++ ++
Sbjct: 282 YVKNL-PENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 340
Query: 122 RSKLVDRVISVEYA 135
+ ++ +V+ V A
Sbjct: 341 KYEIDGQVLEVSMA 354
>gi|453089609|gb|EMF17649.1| RNA-binding domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 337
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 61/144 (42%), Gaps = 19/144 (13%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG---------RHRDGSKSM 59
GF F+ A +AIRGLD F RR L + R ++ R RD +
Sbjct: 188 GFGFIELSTTEAAMNAIRGLDQKVF-QGRRMLVQKHVRKDKPKSPGGSYAPRDRDAPRDR 246
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQE 111
A+ P+KTLF+ N +RD+ F NVL VR+ R FA F E
Sbjct: 247 ASASPSKTLFIGNMS-YEMSDRDLNNLFREIKNVLDVRVAIDRRSGQPRGFAHADFTDVE 305
Query: 112 EATKALESTDRSKLVDRVISVEYA 135
A KA E + R + V++A
Sbjct: 306 SAEKAKEFLGSKMVYGRQLRVDFA 329
>gi|299756715|ref|XP_002912240.1| hypothetical protein CC1G_13772 [Coprinopsis cinerea okayama7#130]
gi|298411800|gb|EFI28746.1| hypothetical protein CC1G_13772 [Coprinopsis cinerea okayama7#130]
Length = 241
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Query: 45 ARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HV 96
ARG R R Q P L V R RD++ F G V H
Sbjct: 64 ARGGEDRERASRSENGGQNPGNNLHVSGLS-HRVDSRDLETAFAKIGRVQKASVMYDPHT 122
Query: 97 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
R R F FV ET EEA A+ S + ++L+ ++I++E A
Sbjct: 123 RESRGFGFVTMETTEEAEAAISSLNGTELMGKIITIEKA 161
>gi|194018610|ref|NP_001123392.1| RNA binding motif protein 28 [Xenopus (Silurana) tropicalis]
gi|189442619|gb|AAI67360.1| rbm28 protein [Xenopus (Silurana) tropicalis]
Length = 828
Score = 50.1 bits (118), Expect = 9e-04, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 25/152 (16%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF +V F DA A++ + Y+ R++ V+ A+ ++ +K + K +
Sbjct: 46 GFGYVTFSMMEDAQRAMKEIKE----YEGRKIEVQVAKKKQVEKNKKAKCEESNENAKEV 101
Query: 69 --------------FVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQF 107
+I + E D+K HF +G VL + I R FAFVQF
Sbjct: 102 KKPKDARGAQKKARLIIRNLSFQCSEEDLKEHFSNFGYVLEINIPKKSDGKMRGFAFVQF 161
Query: 108 ETQEEATKALESTDRSKLVDRVISVEYALKDD 139
+ EA+KAL+ T+ + R ++V++A+ D
Sbjct: 162 KNMLEASKALKGTNMKSIKGRTVAVDWAVAKD 193
>gi|260791540|ref|XP_002590787.1| hypothetical protein BRAFLDRAFT_218629 [Branchiostoma floridae]
gi|229275983|gb|EEN46798.1| hypothetical protein BRAFLDRAFT_218629 [Branchiostoma floridae]
Length = 637
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
K L+V N + E I+ FEPYG V V+ +++AFV FE +E+A KA+E + +
Sbjct: 330 VKVLYVRNL-AVEAAEEIIQAKFEPYGTVERVKKIKDYAFVHFENREDAIKAMEDLNGKE 388
Query: 125 LVDRVISVEYA 135
L + + A
Sbjct: 389 LEGSAMEISLA 399
>gi|361124379|gb|EHK96478.1| putative Uncharacterized RNA-binding protein C25G10.01 [Glarea
lozoyensis 74030]
Length = 296
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATK 115
P LFV P R E ++ R FE YG+V H + R F FV+ ET E+A
Sbjct: 76 PGSNLFVTGIHP-RLSEVEVTRLFEKYGDVEKCQIMLDPHTKESRGFGFVKMETAEQADA 134
Query: 116 ALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGG 153
A E + R +S+E A + + D R+ P GG
Sbjct: 135 AKEGLQGEVIEGRTLSIEKARRSRPQEDPRH-GPSGGG 171
>gi|451993063|gb|EMD85538.1| hypothetical protein COCHEDRAFT_1187995 [Cochliobolus
heterostrophus C5]
Length = 828
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 25/151 (16%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG-------RHRDGSKSMAN 61
GF FV F A A+R +D GYD ++ RG R+ D +K A+
Sbjct: 649 GFGFVEFNSPETATAALRAMD----GYDLEGHKLQIKASHRGADAAEERRNEDAAKKAAS 704
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEAT 114
T +I P +++++ F PYG + VR+ R F F +F T+ +A
Sbjct: 705 -----TKIIIKNLPFEASKKEVRALFAPYGQLRSVRVPKKFDASSRGFGFAEFTTKRDAV 759
Query: 115 KALESTDRSKLVDR--VISVEYALKDDSERD 143
A+ + + L+ R V++ A DD E++
Sbjct: 760 NAMNALKNTHLLGRRLVLAFAEAESDDPEKE 790
>gi|29893585|gb|AAP06839.1| putative transformer serine/arginine-rich ribonucleoprotein [Oryza
sativa Japonica Group]
gi|125585702|gb|EAZ26366.1| hypothetical protein OsJ_10248 [Oryza sativa Japonica Group]
Length = 324
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 90/198 (45%), Gaps = 20/198 (10%)
Query: 55 GSKSMAN---QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFA 103
GS+S+ + + P L+V R +RD+++HF G V+ I R F
Sbjct: 6 GSRSVDSSDVENPGNNLYVTGLS-ARVTDRDLEKHFSAEGEVIDASIVLDPWTRESRGFG 64
Query: 104 FVQFETQEEATKALESTDRSKLVDRVISVEYAL--KDDSERDDRYDSPRRGGYGRHSPYG 161
FV T +EA ++ DRS L RVI+VE A + + RY + Y
Sbjct: 65 FVTMATVKEADLCIKYLDRSVLEGRVITVEKAKRRRGRTPTPGRYLGTKSSCVTPARRYS 124
Query: 162 RSPSPA----YRRRPSPDYGRGRSPAYDRYNGPVYDQRRS-PDHGRHRSPVPVYDRRRSP 216
S SP Y R SP+ R SP R + Y++RRS + R RS P R+
Sbjct: 125 PSYSPVERDRYSSRYSPERERSYSPYGRRRSYSPYNRRRSYSPYERRRSYSPHERRQSYS 184
Query: 217 DYGRNRSPNFGRYRSRSP 234
YGR+ SP +GR RS SP
Sbjct: 185 PYGRSPSP-YGRRRSYSP 201
>gi|47550699|ref|NP_999861.1| heterogeneous nuclear ribonucleoprotein Q [Danio rerio]
gi|34784487|gb|AAH56750.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Danio
rerio]
gi|46249711|gb|AAH68373.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Danio
rerio]
Length = 630
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 287 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADP---IEDPDPEVMAK---VKVL 340
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +GN+ V+ +++AFV F ++ A KAL + +L
Sbjct: 341 FVRNLANSVTEEI-LEKAFGQFGNLERVKKLKDYAFVHFNDRDGAVKALTEMNGKELEGE 399
Query: 129 VISVEYALKDDSERDDR 145
I + +A D +R +R
Sbjct: 400 HIEIVFAKPPDQKRKER 416
>gi|357516355|ref|XP_003628466.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
gi|355522488|gb|AET02942.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
Length = 329
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 18/158 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR---------HRDGSKSM 59
G+AFV FED +DA DAIRG D + +D RL VE A G RG H +G
Sbjct: 72 GYAFVEFEDVQDAEDAIRGRDG--YDFDGHRLRVEAAHGGRGNSSSRDRYSSHSNGRGGR 129
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATK 115
R ++ ++N P +D+K H G+V ++ R V + ++
Sbjct: 130 GVSRRSEYRVIVNGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKY 189
Query: 116 ALESTDRSKLVDRVISVEYALKD-DSERDDRYDSPRRG 152
A++ D S+ + +++ DS RD R SP RG
Sbjct: 190 AIKKLDDSEFRNAFSKSYVRVREYDSRRDSR--SPGRG 225
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR-----NFAFVQFETQEEATKALES 119
++T++V N P RER+++ F YG++ H+ ++ +AFV+FE ++A A+
Sbjct: 32 SRTVYVGNL-PGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDVQDAEDAIRG 90
Query: 120 TDRSKLVDRVISVEYAL--KDDSERDDRYDS 148
D + VE A + +S DRY S
Sbjct: 91 RDGYDFDGHRLRVEAAHGGRGNSSSRDRYSS 121
>gi|432921337|ref|XP_004080108.1| PREDICTED: RNA-binding protein 4B-like [Oryzias latipes]
Length = 344
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+FV N P E +IK FE YG V I +NFAFV E ++ ATKA+++ + L
Sbjct: 4 IFVGNL-PREATEEEIKALFEEYGAVTECAIIKNFAFVHMEDRKAATKAIKNLHQHSLHG 62
Query: 128 RVISVE 133
I+VE
Sbjct: 63 TAINVE 68
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 17/124 (13%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
FAFV+ ED + A AI+ L ++VE + G+ N P K +
Sbjct: 37 FAFVHMEDRKAATKAIKNLHQ--HSLHGTAINVEASHGK------------NFGPVK-IH 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N + + + +++ FE YG V + +NFAFV +EA A++ D S ++
Sbjct: 82 VANVE--KGCDEELRALFEEYGTVSECAVVKNFAFVHMPNYDEAMDAIKELDNSDFQEKR 139
Query: 130 ISVE 133
I V+
Sbjct: 140 IHVQ 143
>gi|108707341|gb|ABF95136.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 347
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 84/188 (44%), Gaps = 17/188 (9%)
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEA 113
+ P L+V R +RD+++HF G V+ I R F FV T +EA
Sbjct: 39 ENPGNNLYVTGLS-ARVTDRDLEKHFSAEGEVIDASIVLDPWTRESRGFGFVTMATVKEA 97
Query: 114 TKALESTDRSKLVDRVISVEYAL--KDDSERDDRYDSPRRGGYGRHSPYGRSPSPA---- 167
++ DRS L RVI+VE A + + RY + Y S SP
Sbjct: 98 DLCIKYLDRSVLEGRVITVEKAKRRRGRTPTPGRYLGTKSSCVTPARRYSPSYSPVERDR 157
Query: 168 YRRRPSPDYGRGRSPAYDRYNGPVYDQRRS-PDHGRHRSPVPVYDRRRSPDYGRNRSPNF 226
Y R SP+ R SP R + Y++RRS + R RS P R+ YGR+ SP +
Sbjct: 158 YSSRYSPERERSYSPYGRRRSYSPYNRRRSYSPYERRRSYSPHERRQSYSPYGRSPSP-Y 216
Query: 227 GRYRSRSP 234
GR RS SP
Sbjct: 217 GRRRSYSP 224
>gi|108707340|gb|ABF95135.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 346
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 84/188 (44%), Gaps = 17/188 (9%)
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEA 113
+ P L+V R +RD+++HF G V+ I R F FV T +EA
Sbjct: 38 ENPGNNLYVTGLS-ARVTDRDLEKHFSAEGEVIDASIVLDPWTRESRGFGFVTMATVKEA 96
Query: 114 TKALESTDRSKLVDRVISVEYAL--KDDSERDDRYDSPRRGGYGRHSPYGRSPSPA---- 167
++ DRS L RVI+VE A + + RY + Y S SP
Sbjct: 97 DLCIKYLDRSVLEGRVITVEKAKRRRGRTPTPGRYLGTKSSCVTPARRYSPSYSPVERDR 156
Query: 168 YRRRPSPDYGRGRSPAYDRYNGPVYDQRRS-PDHGRHRSPVPVYDRRRSPDYGRNRSPNF 226
Y R SP+ R SP R + Y++RRS + R RS P R+ YGR+ SP +
Sbjct: 157 YSSRYSPERERSYSPYGRRRSYSPYNRRRSYSPYERRRSYSPHERRQSYSPYGRSPSP-Y 215
Query: 227 GRYRSRSP 234
GR RS SP
Sbjct: 216 GRRRSYSP 223
>gi|357120144|ref|XP_003561789.1| PREDICTED: uncharacterized protein LOC100835076 [Brachypodium
distachyon]
Length = 356
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATK 115
P LFV R +RD+++HF G V+ I R F FV T +EA +
Sbjct: 48 PGNNLFVTGLSS-RLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMATLKEADR 106
Query: 116 ALESTDRSKLVDRVISVEYA 135
++ DRS L RVI+VE A
Sbjct: 107 CIKYLDRSVLEGRVITVEKA 126
>gi|330843751|ref|XP_003293810.1| hypothetical protein DICPUDRAFT_84328 [Dictyostelium purpureum]
gi|325075834|gb|EGC29677.1| hypothetical protein DICPUDRAFT_84328 [Dictyostelium purpureum]
Length = 292
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALE 118
TL V N +P +TRE D++ F +G + I R F FV F + +EAT A+
Sbjct: 69 TLHVSNLNP-KTREEDLRDTFAQFGKIAECTILVDPNTKESRGFGFVTFLSSDEATDAIS 127
Query: 119 STDRSKLVDRVISVE 133
D SKL VI VE
Sbjct: 128 RLDSSKLDGNVIRVE 142
>gi|327261565|ref|XP_003215600.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Anolis
carolinensis]
Length = 634
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 298 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADP---IEDPDPEVMAK---VKVL 351
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AF+ F+ ++ A KA+E + +L
Sbjct: 352 FVRNLANSVTEEI-LEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEGMNGKELEGE 410
Query: 129 VISVEYALKDDSERDDR 145
I + +A D +R +R
Sbjct: 411 NIEIVFAKPPDQKRKER 427
>gi|410898108|ref|XP_003962540.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Takifugu
rubripes]
Length = 539
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 287 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADP---LEDPDPEVMAK---VKVL 340
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AF+ FE ++ A KAL + L
Sbjct: 341 FVRNLASSVTEEL-LEKAFSQFGKLERVKKLKDYAFIHFEERDGAVKALADLNGKDLEGE 399
Query: 129 VISVEYALKDDSERDDR 145
I + +A D +R +R
Sbjct: 400 HIEIVFAKPPDQKRKER 416
>gi|149637545|ref|XP_001510103.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Ornithorhynchus anatinus]
Length = 623
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 287 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADP---IEDPDPEVMAK---VKVL 340
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AF+ F+ ++ A KA+E + L
Sbjct: 341 FVRNLANTVTEEI-LEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGE 399
Query: 129 VISVEYALKDDSERDDR 145
I + +A D +R +R
Sbjct: 400 NIEIVFAKPPDQKRKER 416
>gi|28302297|gb|AAH46684.1| LOC398498 protein, partial [Xenopus laevis]
Length = 531
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 93/227 (40%), Gaps = 50/227 (22%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSK---SMANQRPTK 66
+AFV+ R+A A+ L+ GR +G K ++ RP
Sbjct: 103 YAFVHMRGTREATKAVEELN--------------------GRELNGKKMLVELSKPRPQN 142
Query: 67 T--LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
T +FV N +I++ FE YG VL I +++AFV + EA A+E+ +
Sbjct: 143 TWKIFVGNVSS-SCEAAEIRKIFEEYGRVLECDIVKDYAFVHMTRESEARAAIEALNGKD 201
Query: 125 LVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAY 184
+ + I+VE S + R G + R P R A + R S ++ R AY
Sbjct: 202 IKGKRINVEM-----SNKVQRSGGANGGSHSRRRPDDRE---APQSRESYNHRRATEAAY 253
Query: 185 DRYNGPVYDQRRSPDHGRH-------RSPVPVYDRRRSPDYGRNRSP 224
Y +RR+P+ R+ R PVY Y R+RSP
Sbjct: 254 ASYKSNY--ERRAPEPSRYDPYESRPRPQSPVY-------YARDRSP 291
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+FV N D RT E ++ FE YG VL+ + R +AFV EATKA+E + +L
Sbjct: 70 IFVGNIDE-RTSEGEVTALFERYGAVLNCAVMRQYAFVHMRGTREATKAVEELNGRELNG 128
Query: 128 RVISVEYA 135
+ + VE +
Sbjct: 129 KKMLVELS 136
>gi|361124073|gb|EHK96194.1| putative Multiple RNA-binding domain-containing protein 1 [Glarea
lozoyensis 74030]
Length = 763
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 17/151 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR-----GERGRHRDGSKSMANQR 63
GF F+ F A A++ +D + D +L ++ + E R D +K ++ +R
Sbjct: 581 GFGFLEFRTKDQAQAALKAMDG--YTLDDHKLLIKASHKGVDAAEERRKEDRAKKISGKR 638
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKA 116
T +I P ++DI+ F YG + VR+ R FAF F T EA A
Sbjct: 639 ---TKIIIKNLPFEASKKDIRTLFGTYGQLRSVRMPKKFDHSARGFAFADFITAREAENA 695
Query: 117 LESTDRSKLVDRVISVEYALKDDSERDDRYD 147
LE+ + L+ R + +E+A +D + ++ +
Sbjct: 696 LEALKDTHLLGRRLVLEFAAEDSIDAEEEIE 726
>gi|413934995|gb|AFW69546.1| hypothetical protein ZEAMMB73_512754 [Zea mays]
Length = 283
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATKALE 118
TL+V R ERD+K +F +G V+ H R+ R FAFV +T EEA + ++
Sbjct: 67 TLYVTGLS-SRVTERDVKDYFSKHGRVVGCHVVLEPHTRVSRGFAFVSMDTVEEAERCIK 125
Query: 119 STDRSKLVDRVISVE 133
+ S + R I+VE
Sbjct: 126 YLNGSVMEGRNITVE 140
>gi|407040620|gb|EKE40231.1| RNA recognition motif domain containing protein [Entamoeba nuttalli
P19]
Length = 326
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 9/79 (11%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKA 116
KTL+V + D + E +K F PYGNV++ I+++ +AF++++ E+A KA
Sbjct: 37 MKTLYVSDVD-VSIDENKLKELFSPYGNVINSTIKKSSKGTNDFYYAFIEYDRPEDAAKA 95
Query: 117 LESTDRSKLVDRVISVEYA 135
L D+ +L + ++V++A
Sbjct: 96 LREMDQHELAGKRLNVKFA 114
>gi|50306903|ref|XP_453427.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642561|emb|CAH00523.1| KLLA0D08206p [Kluyveromyces lactis]
Length = 391
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 96/204 (47%), Gaps = 27/204 (13%)
Query: 5 LHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRP 64
L GFA++ F+ ++ +A+ GL + R L ++ A GR A++ P
Sbjct: 168 LRNKGFAYIDFKTEKQM-EAVVGLSE--SALNGRNLLIKNAGSYEGRPDKNDLVAASKNP 224
Query: 65 -TKTLFV--INFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEA 113
++ LFV ++FD T E +++HF+ G ++ +R+ + FAF+ F+ + A
Sbjct: 225 PSRILFVGNLSFD---TTEDLLRKHFQHCGEIMRIRMATFEDTGKCKGFAFIDFKDETGA 281
Query: 114 TKALESTDRSKLVDRVISVEYALKDDSERDDR----YDS--PRRGGYGRHS--PYGRSPS 165
T AL+ K+ R I +EY +D S+R R D+ PR+ + + P +
Sbjct: 282 TNALKDKSCRKIASRPIRMEYG-EDRSKRQVRRRPELDAREPRKPSFDIKTTQPSSSAAP 340
Query: 166 PAYRRRPSPDYGRGRSPAYDRYNG 189
P R R +P Y R P++ N
Sbjct: 341 PPIRERRAPSYS-NRQPSHKDSNN 363
>gi|226496087|ref|NP_001149397.1| transformer-2 protein [Zea mays]
gi|194702282|gb|ACF85225.1| unknown [Zea mays]
gi|195626954|gb|ACG35307.1| transformer-2 protein [Zea mays]
gi|413934993|gb|AFW69544.1| Transformer-2 protein [Zea mays]
Length = 280
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATKALE 118
TL+V R ERD+K +F +G V+ H R+ R FAFV +T EEA + ++
Sbjct: 64 TLYVTGLS-SRVTERDVKDYFSKHGRVVGCHVVLEPHTRVSRGFAFVSMDTVEEAERCIK 122
Query: 119 STDRSKLVDRVISVE 133
+ S + R I+VE
Sbjct: 123 YLNGSVMEGRNITVE 137
>gi|357516357|ref|XP_003628467.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
gi|355522489|gb|AET02943.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
Length = 347
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 18/158 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR---------HRDGSKSM 59
G+AFV FED +DA DAIRG D + +D RL VE A G RG H +G
Sbjct: 72 GYAFVEFEDVQDAEDAIRGRDG--YDFDGHRLRVEAAHGGRGNSSSRDRYSSHSNGRGGR 129
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATK 115
R ++ ++N P +D+K H G+V ++ R V + ++
Sbjct: 130 GVSRRSEYRVIVNGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKY 189
Query: 116 ALESTDRSKLVDRVISVEYALKD-DSERDDRYDSPRRG 152
A++ D S+ + +++ DS RD R SP RG
Sbjct: 190 AIKKLDDSEFRNAFSKSYVRVREYDSRRDSR--SPGRG 225
Score = 37.4 bits (85), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR-----NFAFVQFETQEEATKALES 119
++T++V N P RER+++ F YG++ H+ ++ +AFV+FE ++A A+
Sbjct: 32 SRTVYVGNL-PGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDVQDAEDAIRG 90
Query: 120 TDRSKLVDRVISVEYAL--KDDSERDDRYDS 148
D + VE A + +S DRY S
Sbjct: 91 RDGYDFDGHRLRVEAAHGGRGNSSSRDRYSS 121
>gi|389632927|ref|XP_003714116.1| multiple RNA-binding domain-containing protein 1, partial
[Magnaporthe oryzae 70-15]
gi|351646449|gb|EHA54309.1| multiple RNA-binding domain-containing protein 1, partial
[Magnaporthe oryzae 70-15]
Length = 867
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 17/138 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA-RG----ERGRHRDGSKSMANQR 63
GF FV F A A++ +DN + + L+V + RG E R D +K A QR
Sbjct: 685 GFGFVEFRSKELAQAALKVMDN--YNLEGHTLTVRASHRGLDAAEERRREDKAKKQAGQR 742
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKA 116
T V+ P ++D++ F YG + VR+ +N FAF +F T +EA A
Sbjct: 743 ---TKIVVKNLPFEATKKDVRTLFGTYGQLRSVRVPKNFENRTRGFAFAEFTTPKEAENA 799
Query: 117 LESTDRSKLVDRVISVEY 134
L + + L+ R + +++
Sbjct: 800 LNALKNTHLLGRKLVLDF 817
>gi|348529965|ref|XP_003452482.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Oreochromis
niloticus]
Length = 631
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADP---VAEPDPEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV T E +++ F +G + V+ +++AFV FE ++ A KA+E + +L
Sbjct: 344 FVRKLATAVTEEL-LEKTFSQFGKLERVKKLKDYAFVHFEERDAAVKAMEEMNGKELGGE 402
Query: 129 VISVEYALKDDSERDDR 145
I + A D +R +R
Sbjct: 403 EIEIVLAKPPDKKRKER 419
>gi|148909953|gb|ABR18062.1| unknown [Picea sitchensis]
Length = 331
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 16/131 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRD----------GSKS 58
G+ F+ FED RDA DAIRG D + +D RL VE A G RG+ G +S
Sbjct: 46 GYCFIEFEDARDAEDAIRGRDG--YNFDGNRLRVELAHGGRGQSSTNDRYSSYSSAGGRS 103
Query: 59 MANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEAT 114
R ++ +++ P +D+K H G+V ++ R+ V + ++
Sbjct: 104 GGVSRRSEYRVLVSGLPSSASWQDLKDHMRRAGDVCFSQVFRDSSGTTGIVDYTNYDDMK 163
Query: 115 KALESTDRSKL 125
A+ D S+
Sbjct: 164 YAIRKLDDSEF 174
>gi|168043399|ref|XP_001774172.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674440|gb|EDQ60948.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 240
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 13/128 (10%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG--------RHRDGSKSMA 60
G+ F+ FED RDA DAIRG D + +D RL VE A G RG G ++
Sbjct: 46 GYCFLEFEDARDAEDAIRGRDG--YNFDGNRLRVEIAHGGRGPPPAVDRSAAESGGRAGG 103
Query: 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN---FAFVQFETQEEATKAL 117
R ++ ++ P +D+K H G+V ++ R+ V F ++ A+
Sbjct: 104 VSRRSEYRVMVTGLPSSASWQDLKDHMRRAGDVCFAQVFRDAGTMGIVDFTNYDDMKYAI 163
Query: 118 ESTDRSKL 125
D S+
Sbjct: 164 RKLDDSEF 171
>gi|33359635|gb|AAQ17065.1| nucleolin 3 [Cyprinus carpio]
gi|33949944|gb|AAQ55855.1| nucleolin [Cyprinus carpio]
Length = 637
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAF+ FE+ DA +A+ +N + R + +E+++ ER R PTKTL
Sbjct: 435 GFAFLEFENVEDAKEALENCNNTEI--EGRSIRLEFSQSERDRSS--GGGRGGSGPTKTL 490
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIR-----RNFAFVQFETQEEATKALESTDRS 123
FV T + +K F+ N V R + F FV F+++E+ A E+ D
Sbjct: 491 FVKGLSE-DTTDHSLKEAFDGAVNARIVTDRDTGSSKGFGFVDFDSEEDCKAAKEAMDDG 549
Query: 124 KLVDRVISVEYA 135
++ ++++YA
Sbjct: 550 EIDGNRVTLDYA 561
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 15/98 (15%)
Query: 55 GSKSMANQRPTKT---LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN------FAFV 105
G KS R T + V+N E ++ FE + +RI +N FAF+
Sbjct: 383 GEKSQKGGRATAAANKVLVVNNLAFTANEDALQSVFE---KAVSIRIPQNNGRPKGFAFL 439
Query: 106 QFETQEEATKALESTDRSKLVDRVISVEYALKDDSERD 143
+FE E+A +ALE+ + +++ R I +E++ SERD
Sbjct: 440 EFENVEDAKEALENCNNTEIEGRSIRLEFS---QSERD 474
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 33 FGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 92
G + ++L + + ++ + ++ S+ +R ++TLFV N P + ++K F+ +
Sbjct: 277 LGLNGKKLMGQPVKLDKAKSKENSQDSKKERDSRTLFVKNL-PYSVTQEELKEIFDQAVD 335
Query: 93 V----LHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134
+ H R A+++F+++ A KA+E S + R I +++
Sbjct: 336 IPDTDGHSGSSRGIAYLEFKSEAIAEKAMEEAQGSDVQGRSIIIDF 381
>gi|268563921|ref|XP_002647045.1| C. briggsae CBR-RSP-3 protein [Caenorhabditis briggsae]
Length = 234
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
FAF+ FED+RDA DA+R D F D RR+ VE+ RG R G + + ++ T+
Sbjct: 46 AFAFIEFEDNRDAEDAVRARDGYEF--DGRRIRVEFTRGVGPR---GPVAQSTRKEVATV 100
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 125
+ +D+K H G+V + + R+ V+F ++ A+ D +K
Sbjct: 101 EAVTIVEDVVVVKDLKDHMREAGDVCYADVARDGTGVVEFTRYDDVKYAIRKLDDTKF 158
>gi|295673056|ref|XP_002797074.1| multiple RNA-binding domain-containing protein [Paracoccidioides
sp. 'lutzii' Pb01]
gi|226282446|gb|EEH38012.1| multiple RNA-binding domain-containing protein [Paracoccidioides
sp. 'lutzii' Pb01]
Length = 806
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 19/151 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR-----GERGRHRDGSKSMANQR 63
GF FV F A A+ ++ + D+ L ++ + E R D +K +A R
Sbjct: 625 GFGFVEFRTSAQARAALATMNG--YKLDQHELVIKTSHKATDAAEERRREDNAKKLA-MR 681
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKA 116
TK L I P + ++DI+ F YG + VR+ R FAF F + EA A
Sbjct: 682 GTKIL--IKNLPFQATKKDIRNLFGAYGKLRSVRVPQKFDRTARGFAFADFVSAREAENA 739
Query: 117 LESTDRSKLVDRVISVEYALKD--DSERDDR 145
+E+ + L+ R + +E+A +D D E++ R
Sbjct: 740 MEALKHTHLLGRRLVLEFASEDAIDPEKEIR 770
>gi|325302612|tpg|DAA34674.1| TPA_inf: alternative splicing factor SRp55/B52/SRp75 [Amblyomma
variegatum]
Length = 281
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 18/116 (15%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136
+ RERD+ R F+ YG V + ++ F FV+FE +A A++ + +L+ +SVE A
Sbjct: 13 QVRERDVDRFFKGYGRVGDIHLKNGFGFVEFEDHRDADDAIKDLNGKELLGERVSVELA- 71
Query: 137 KDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYR-RRPSPDYGRGRSPAYDRYNGPV 191
RRG P GR +P R R P GR +P R+ PV
Sbjct: 72 ----------HGSRRG------PGGRIVAPGSRDWRSPPGGGRFNAPRESRFGPPV 111
Score = 36.6 bits (83), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49
GF FV FED RDA DAI+ L+ + R+SVE A G R
Sbjct: 37 GFGFVEFEDHRDADDAIKDLNGKELLGE--RVSVELAHGSR 75
>gi|320169942|gb|EFW46841.1| hypothetical protein CAOG_04799 [Capsaspora owczarzaki ATCC 30864]
Length = 313
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATKALE 118
TL VI P+ TRE D++ F +G V+ H R FAF+ E +E+A A+
Sbjct: 59 TLCVIGLSPL-TREADLESKFARFGKVVRCDVVRDPHTNDSRGFAFIGMENEEQAHAAIR 117
Query: 119 STDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAY 168
R++ R ISVE + E + +SP R R + RSP+P +
Sbjct: 118 GCHRTEFDGRTISVEKLV----EMLNMMNSPLRRNQARRA-RPRSPTPGH 162
>gi|328874161|gb|EGG22527.1| Zinc finger protein [Dictyostelium fasciculatum]
Length = 1780
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATKALE 118
T+ V F IR RE D+K FE YG V + +I R F FV + T EEA +A+
Sbjct: 246 TIHVAGFG-IRIREDDLKEKFEVYGKVKSCSVLVDPNTKISRGFGFVTYATSEEADEAIR 304
Query: 119 STDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRH 157
D +K+ I V+ + + + R PR G +
Sbjct: 305 LMDGTKIDGYPIKVQKLIDSTNNKGSRRSKPRDSTPGSY 343
>gi|198424368|ref|XP_002126535.1| PREDICTED: similar to Ras GTPase-activating protein-binding protein
2 (G3BP-2) (GAP SH3 domain-binding protein 2) [Ciona
intestinalis]
Length = 460
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 10/120 (8%)
Query: 43 EWARGERG---RHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR 99
E A G+R R RD + + +FV N PI +E D+K HF +GNVL VRI
Sbjct: 309 ERAYGDRNDARRPRDAPSGVVRYPDNQQIFVGNL-PIDIKEADLKNHFAEFGNVLEVRIN 367
Query: 100 R------NFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGG 153
+F FV FE+ K LE ++ I++E + ++ R PRRG
Sbjct: 368 HSHSNNPSFGFVIFESPSAVEKVLEIMPTQYKNNQRINIEEKKQRNARDARRGGDPRRGA 427
>gi|440474273|gb|ELQ43025.1| multiple RNA-binding domain-containing protein 1 [Magnaporthe
oryzae Y34]
gi|440485469|gb|ELQ65427.1| multiple RNA-binding domain-containing protein 1 [Magnaporthe
oryzae P131]
Length = 831
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 17/138 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA-RG----ERGRHRDGSKSMANQR 63
GF FV F A A++ +DN + + L+V + RG E R D +K A QR
Sbjct: 649 GFGFVEFRSKELAQAALKVMDN--YNLEGHTLTVRASHRGLDAAEERRREDKAKKQAGQR 706
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKA 116
T V+ P ++D++ F YG + VR+ +N FAF +F T +EA A
Sbjct: 707 ---TKIVVKNLPFEATKKDVRTLFGTYGQLRSVRVPKNFENRTRGFAFAEFTTPKEAENA 763
Query: 117 LESTDRSKLVDRVISVEY 134
L + + L+ R + +++
Sbjct: 764 LNALKNTHLLGRKLVLDF 781
>gi|400603278|gb|EJP70876.1| RNA recognition domain-containing protein [Beauveria bassiana ARSEF
2860]
Length = 812
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 81/187 (43%), Gaps = 51/187 (27%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LF+ N + +RD+ F YG + + ++ + FVQ+ T EE +A+++ + ++
Sbjct: 358 LFIGNLSSDKVSKRDVFEIFHRYGRLAQISLKSAYGFVQYHTVEEGRRAVQNLEGVEIKG 417
Query: 128 RVISVEYALKDDSERDDRYDSP---------------------RRGGYGRHSPYGRSPSP 166
R I +E + D + +R SP RRGG HSP
Sbjct: 418 RRIHLEISKLQDKSKKERNRSPERGGRGRDGPRKGDKFHDRDDRRGGR-HHSP------- 469
Query: 167 AYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNF 226
RR S +GR D Y+G R HG R DR RSPDYGR+ +
Sbjct: 470 ---RRQS-YHGRD-----DSYSG------RDKTHGSGRG----RDRSRSPDYGRH---DK 507
Query: 227 GRYRSRS 233
GRYR RS
Sbjct: 508 GRYRQRS 514
>gi|255732796|ref|XP_002551321.1| hypothetical protein CTRG_05619 [Candida tropicalis MYA-3404]
gi|240131062|gb|EER30623.1| hypothetical protein CTRG_05619 [Candida tropicalis MYA-3404]
Length = 409
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 20/144 (13%)
Query: 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR----HRDGSKSMAN 61
GFA+V + + I G R+L ++ A GR +GS S +
Sbjct: 155 QIKGFAYVDLPSLNHVQSVVSLSEQILNG---RKLLIKNANSFEGRPEKSTTEGSSSASK 211
Query: 62 QRPTKTLFV--INFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQE 111
P++ LFV ++FD T E +++ HF G++ +R+ + FAF+ F+ +E
Sbjct: 212 NPPSRILFVGNLSFD---TTEDNLEEHFRHCGDITRIRMATFQDTGKCKGFAFIDFKNEE 268
Query: 112 EATKALESTDRSKLVDRVISVEYA 135
AT AL S ++R + +EY
Sbjct: 269 GATNALNSKLTKIFINRKLRMEYG 292
>gi|407264369|ref|XP_003945664.1| PREDICTED: periphilin-1-like [Mus musculus]
Length = 668
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 150 RRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPV 209
RR + H P RS Y R SP Y R RSP Y R P Y + RS + R RS P
Sbjct: 227 RRKTFSSHHPRDRSSH--YARDRSPHYARDRSPHYARDRPPQYARDRSSQYARDRS--PQ 282
Query: 210 YDRRRSPDYGRNRSPNFGRYRS 231
Y R RSP Y R+RSP++ R RS
Sbjct: 283 YARDRSPQYARDRSPHYARDRS 304
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 121 DRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGR--HSPYGRSPSPAYRRRPSPDYGR 178
DRS R S +YA +R +Y R Y R S Y R S Y R SP Y R
Sbjct: 310 DRSSQYARDRSSQYA----RDRSSQYARDRSSQYARDRSSQYARDRSSQYARDRSPQYAR 365
Query: 179 GRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRS 231
RS Y R P Y + RSP + R RS P Y R RS Y R+RSP + R RS
Sbjct: 366 DRSSHYARDRSPHYARDRSPHYARDRS--PHYARDRSSHYARDRSPQYARDRS 416
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 147 DSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSP 206
D P + R S Y R SP Y R SP Y R RSP Y R P Y + RS + R RS
Sbjct: 262 DRPPQYARDRSSQYARDRSPQYARDRSPQYARDRSPHYARDRSPQYARDRSSQYARDRS- 320
Query: 207 VPVYDRRRSPDYGRNRSPNFGRYRS 231
Y R RS Y R+RS + R RS
Sbjct: 321 -SQYARDRSSQYARDRSSQYARDRS 344
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 121 DRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGR--HSPYGRSPSPAYRRRPSPDYGR 178
DRS R S +YA +R +Y R Y R S Y R SP Y R SP Y R
Sbjct: 334 DRSSQYARDRSSQYA----RDRSSQYARDRSPQYARDRSSHYARDRSPHYARDRSPHYAR 389
Query: 179 GRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRS 231
RSP Y R Y + RSP + R RS Y R RS Y R+RS ++ R RS
Sbjct: 390 DRSPHYARDRSSHYARDRSPQYARDRS--SQYARDRSSHYARDRSSHYARDRS 440
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 160 YGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYG 219
Y R SP Y R S Y R RS Y R Y + RS + R RS Y R RS Y
Sbjct: 299 YARDRSPQYARDRSSQYARDRSSQYARDRSSQYARDRSSQYARDRS--SQYARDRSSQYA 356
Query: 220 RNRSPNFGRYRS 231
R+RSP + R RS
Sbjct: 357 RDRSPQYARDRS 368
>gi|326916225|ref|XP_003204410.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Meleagris gallopavo]
Length = 562
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 287 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADP---IEDPDPEVMAK---VKVL 340
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AF+ F+ ++ A KA+E + L
Sbjct: 341 FVRNLANTVTEEI-LEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGE 399
Query: 129 VISVEYALKDDSERDDR 145
I + +A D +R +R
Sbjct: 400 NIEIVFAKPPDQKRKER 416
>gi|50415109|gb|AAH77356.1| LOC398498 protein [Xenopus laevis]
Length = 471
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 93/227 (40%), Gaps = 50/227 (22%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSK---SMANQRPTK 66
+AFV+ R+A A+ L+ GR +G K ++ RP
Sbjct: 43 YAFVHMRGTREATKAVEELN--------------------GRELNGKKMLVELSKPRPQN 82
Query: 67 T--LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
T +FV N +I++ FE YG VL I +++AFV + EA A+E+ +
Sbjct: 83 TWKIFVGNVSS-SCEAAEIRKIFEEYGRVLECDIVKDYAFVHMTRESEARAAIEALNGKD 141
Query: 125 LVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAY 184
+ + I+VE S + R G + R P R A + R S ++ R AY
Sbjct: 142 IKGKRINVEM-----SNKVQRSGGANGGSHSRRRPDDRE---APQSRESYNHRRATEAAY 193
Query: 185 DRYNGPVYDQRRSPDHGRH-------RSPVPVYDRRRSPDYGRNRSP 224
Y +RR+P+ R+ R PVY Y R+RSP
Sbjct: 194 ASYKSNY--ERRAPEPSRYDPYESRPRPQSPVY-------YARDRSP 231
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+FV N D RT E ++ FE YG VL+ + R +AFV EATKA+E + +L
Sbjct: 10 IFVGNIDE-RTSEGEVTALFERYGAVLNCAVMRQYAFVHMRGTREATKAVEELNGRELNG 68
Query: 128 RVISVE 133
+ + VE
Sbjct: 69 KKMLVE 74
>gi|148222587|ref|NP_001079614.1| RNA binding motif protein 14 [Xenopus laevis]
gi|80477004|gb|AAI08787.1| MGC52864 protein [Xenopus laevis]
Length = 467
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+FV N D RT + +I FE YG V++ + + +AFV EEATKA+E + +L
Sbjct: 10 IFVGNVDD-RTTQEEITELFERYGTVVNCAVMKQYAFVHMRGAEEATKAVEDLNGRELNG 68
Query: 128 RVISVE 133
+ + VE
Sbjct: 69 KKMLVE 74
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 95/230 (41%), Gaps = 54/230 (23%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSK---SMANQRPTK 66
+AFV+ +A A+ L+ GR +G K ++ RP
Sbjct: 43 YAFVHMRGAEEATKAVEDLN--------------------GRELNGKKMLVELSKPRPQN 82
Query: 67 T--LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
T +FV N +I++ FE YG V+ I +++AFV + EA A+E+ + +
Sbjct: 83 TWKIFVGNVSS-SCEGSEIRKIFEEYGRVVECDIVKDYAFVHMTRESEARAAIEALNGKE 141
Query: 125 LVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPS---PAYRRRPSPDYGRGRS 181
+ + I+VE + K +R G S +GR + A + R S ++ R
Sbjct: 142 IKGKRINVEMSHK-----------VQRSGTSNGSSHGRRRTDDREAPQSRESYNHRRATE 190
Query: 182 PAYDRYNGPVYDQRRSPDHGRH-------RSPVPVYDRRRSPDYGRNRSP 224
AY Y +R +P+ R+ R P P+Y Y R+RSP
Sbjct: 191 AAYASYALKSGYERYAPESSRYDLYESRPRPPSPLY-------YARDRSP 233
>gi|345326436|ref|XP_003431043.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q
[Ornithorhynchus anatinus]
Length = 562
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 287 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADP---IEDPDPEVMAK---VKVL 340
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AF+ F+ ++ A KA+E + L
Sbjct: 341 FVRNLANTVTEEI-LEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGE 399
Query: 129 VISVEYALKDDSERDDR 145
I + +A D +R +R
Sbjct: 400 NIEIVFAKPPDQKRKER 416
>gi|28175406|gb|AAH45210.1| MGC52864 protein [Xenopus laevis]
Length = 460
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+FV N D RT + +I FE YG V++ + + +AFV EEATKA+E + +L
Sbjct: 3 IFVGNVDD-RTTQEEITELFERYGTVVNCAVMKQYAFVHMRGAEEATKAVEDLNGRELNG 61
Query: 128 RVISVE 133
+ + VE
Sbjct: 62 KKMLVE 67
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 95/230 (41%), Gaps = 54/230 (23%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSK---SMANQRPTK 66
+AFV+ +A A+ L+ GR +G K ++ RP
Sbjct: 36 YAFVHMRGAEEATKAVEDLN--------------------GRELNGKKMLVELSKPRPQN 75
Query: 67 T--LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
T +FV N +I++ FE YG V+ I +++AFV + EA A+E+ + +
Sbjct: 76 TWKIFVGNVSS-SCEGSEIRKIFEEYGRVVECDIVKDYAFVHMTRESEARAAIEALNGKE 134
Query: 125 LVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPS---PAYRRRPSPDYGRGRS 181
+ + I+VE + K +R G S +GR + A + R S ++ R
Sbjct: 135 IKGKRINVEMSHK-----------VQRSGTSNGSSHGRRRTDDREAPQSRESYNHRRATE 183
Query: 182 PAYDRYNGPVYDQRRSPDHGRH-------RSPVPVYDRRRSPDYGRNRSP 224
AY Y +R +P+ R+ R P P+Y Y R+RSP
Sbjct: 184 AAYASYALKSGYERYAPESSRYDLYESRPRPPSPLY-------YARDRSP 226
>gi|326497929|dbj|BAJ94827.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 469
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 32/192 (16%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF FV + + A A + L + F D +L+V WA +G S S + KT+
Sbjct: 233 GFLFVEYYNHACADYARQKLSSPDFKVDGSQLTVSWAE-PKGSSSSSSDSSSPAAQVKTI 291
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTD 121
+V N P + +K FE +G V + + +R+F FV F + A KA++ ++
Sbjct: 292 YVKNL-PENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 350
Query: 122 RSKLVDRVISVEYALKDDSERDDR---------YDSPRRGGY--------------GRHS 158
+ ++ +V+ V A ++ D Y P GGY +
Sbjct: 351 KYEIDGQVLEVSMAKPLSDKKPDHSFKPGGAPSYPLPPYGGYMGDPYGAYGGGPGFNQPM 410
Query: 159 PYGRSPSPAYRR 170
YGR P+PA R
Sbjct: 411 IYGRGPAPAGMR 422
>gi|308802782|ref|XP_003078704.1| RNA recognition motif (ISS) [Ostreococcus tauri]
gi|116057157|emb|CAL51584.1| RNA recognition motif (ISS) [Ostreococcus tauri]
Length = 907
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 14/135 (10%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPT--- 65
GF FV + R A + L D + L +E + GR DG +S ++ PT
Sbjct: 743 GFGFVELDSHRTAKSVLNALQGSSL--DGKTLKLELSSQGSGREDDGKES--SKVPTGFS 798
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALE 118
T VI +RDI++ F P+G + VR+ R FAFV+F T E A++
Sbjct: 799 ATKLVIRNVAFEATKRDIQKLFNPFGQLKQVRLPKKFDGAHRGFAFVEFNTARETQAAMD 858
Query: 119 STDRSKLVDRVISVE 133
+ + L R + +E
Sbjct: 859 ALKGTHLYGRHVVLE 873
Score = 40.0 bits (92), Expect = 0.79, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATK 115
RPT L V N P +E+ ++ HF G V V++ R AFV ++T++ AT+
Sbjct: 30 RPTSRLCVKNV-PKHVKEQRLREHFASQGEVTDVKVVRTADGTSRQMAFVGYKTEKAATR 88
Query: 116 ALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPA 167
A++ D++ + I V YA S + R S G + + +PA
Sbjct: 89 AMKYFDKTFIDTSRIEVTYARSVHSAQIPRPWSKYSAGSSANKEVEKKKAPA 140
>gi|448122956|ref|XP_004204573.1| Piso0_000426 [Millerozyma farinosa CBS 7064]
gi|448125223|ref|XP_004205131.1| Piso0_000426 [Millerozyma farinosa CBS 7064]
gi|358249764|emb|CCE72830.1| Piso0_000426 [Millerozyma farinosa CBS 7064]
gi|358350112|emb|CCE73391.1| Piso0_000426 [Millerozyma farinosa CBS 7064]
Length = 841
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 12/140 (8%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF FV F+ DA AI+ +D + +L + +G G++ +KS + +
Sbjct: 661 GFGFVEFKTKEDANTAIKTMDGYVLDGHKLQLKLSNRQGGSGKNETKTKSSKSSKIIIKN 720
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTD 121
P T +DI F +G + R+ R FAFV+F +EA A+E
Sbjct: 721 L-----PFETTRKDIVELFGAFGQIKSARVPKKFDRSARGFAFVEFNLLKEAENAIEQLQ 775
Query: 122 RSKLVDRVISVEYALKDDSE 141
L+ R + ++YA +D S+
Sbjct: 776 GVHLLGRRLVMQYAEQDSSD 795
>gi|449485688|ref|XP_004157245.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Cucumis sativus]
Length = 322
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 69/168 (41%), Gaps = 15/168 (8%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR-------HRDGSKSMAN 61
G+AFV FED RDA DAI G D F D RL VE+A G RG R GS
Sbjct: 46 GYAFVEFEDVRDAEDAIYGRDGYKF--DGCRLRVEFAHGGRGHSSSVDRYSRSGSSRGGV 103
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKAL 117
R T ++ P +D+K H G+V + R+ V + ++ A+
Sbjct: 104 PRRTDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAI 163
Query: 118 ESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPS 165
D S+ + +K+ R SP R S Y RSPS
Sbjct: 164 RKLDDSEFRNAFSRAYVRVKEYDSRHSYSRSPSLD--SRRSDYSRSPS 209
>gi|310790609|gb|EFQ26142.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 357
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 57/128 (44%), Gaps = 18/128 (14%)
Query: 19 RDAADAIRGLDNIPFGY---DRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDP 75
RD D+ R P G DR R + + G RG DG+ + P LFV P
Sbjct: 36 RDDGDSGRRRSASPSGNGDRDRDRATKDET-GSRGGDDDGAIN-----PGSNLFVTGIHP 89
Query: 76 IRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
R E+++ R FE YG+V H + R F FV+ T ++A A E ++
Sbjct: 90 -RLTEQEVTRMFEKYGDVEKCQIMRDPHTKESRGFGFVKMVTSDQADAAKEGLQGEQIEG 148
Query: 128 RVISVEYA 135
R +S+E A
Sbjct: 149 RTLSIEKA 156
>gi|169616726|ref|XP_001801778.1| hypothetical protein SNOG_11538 [Phaeosphaeria nodorum SN15]
gi|111060126|gb|EAT81246.1| hypothetical protein SNOG_11538 [Phaeosphaeria nodorum SN15]
Length = 830
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 16/145 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRR--RLSVEWARGERGRHRDGSKSMANQRPTK 66
GF FV F A+ A+R +D G+D +L ++ + + K A ++
Sbjct: 651 GFGFVEFNSAETASAALRTMD----GHDLEGHKLQIKASHKGADAAEERRKEDAAKKAAS 706
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALES 119
T +I P ++D++ F PYG + VR+ R F F +F T+ +A A+ +
Sbjct: 707 TKIIIKNLPFEAGKKDVRALFTPYGQLRSVRVPKKFDASSRGFGFAEFTTKRDAVNAMNA 766
Query: 120 TDRSKLVDRVISVEYALKDDSERDD 144
+ L+ R + + +A ++E DD
Sbjct: 767 LKNTHLLGRRLVLAFA---ETESDD 788
>gi|398411554|ref|XP_003857115.1| hypothetical protein MYCGRDRAFT_102763 [Zymoseptoria tritici
IPO323]
gi|339477000|gb|EGP92091.1| hypothetical protein MYCGRDRAFT_102763 [Zymoseptoria tritici
IPO323]
Length = 377
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 19/140 (13%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRH-----RDGSKSMANQR 63
GFAFV F D A A + L++ F + RRLSV++ + R R+G +
Sbjct: 229 GFAFVEFSDQEAANRAKQELNHTEF--EGRRLSVQYHLKKDRREGGFSPREGG---TRNK 283
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P+KTLF+ N + +RD+ F+ NVL VR+ R FA F E A K
Sbjct: 284 PSKTLFIGNMS-YQMSDRDLNDLFKEVRNVLDVRVAIDRRSGQPRGFAHADFIDMESAKK 342
Query: 116 ALESTDRSKLVDRVISVEYA 135
A E ++ + R + ++Y+
Sbjct: 343 AKELLEQKSVYGRQLRIDYS 362
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKA 116
P+K L+V N T + ++ F +G V+ ++ + FAFV+F QE A +A
Sbjct: 186 PSKILYVGNLFFEVTAPK-LEAAFGRFGEVVSSKVVTDARGLSKGFAFVEFSDQEAANRA 244
Query: 117 LESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGG 153
+ + ++ R +SV+Y LK D R + SPR GG
Sbjct: 245 KQELNHTEFEGRRLSVQYHLKKD--RREGGFSPREGG 279
>gi|302795628|ref|XP_002979577.1| hypothetical protein SELMODRAFT_36388 [Selaginella moellendorffii]
gi|300152825|gb|EFJ19466.1| hypothetical protein SELMODRAFT_36388 [Selaginella moellendorffii]
Length = 236
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 12/127 (9%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG-----RHRD-GSKSMANQ 62
G+ F+ FED RDA DAIRG D + +D RL VE A G RG R+ G + +
Sbjct: 43 GYCFIEFEDVRDAEDAIRGRDG--YNFDGYRLRVEIAHGGRGPPSSDRYSSYGGRGGSVS 100
Query: 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALE 118
R ++ +I P +D+K H G+V ++ R V F ++ A++
Sbjct: 101 RRSEYRVIITGLPSSASWQDLKDHMRRAGDVCFAQVFREGNGTTGIVDFTNYDDMKYAIK 160
Query: 119 STDRSKL 125
D S+
Sbjct: 161 KLDDSEF 167
>gi|302694499|ref|XP_003036928.1| hypothetical protein SCHCODRAFT_63824 [Schizophyllum commune H4-8]
gi|300110625|gb|EFJ02026.1| hypothetical protein SCHCODRAFT_63824 [Schizophyllum commune H4-8]
Length = 259
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATK 115
PT+ L V IRT ERD+ F +G V V I R F F++ T EEAT+
Sbjct: 75 PTQVLGVFGLS-IRTEERDLDEEFSRFGTVEKVTIVYDQRSGRSRGFGFIRMSTVEEATR 133
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
++ + L R I V+Y++ D
Sbjct: 134 CIQELNGIDLNGRNIRVDYSVTD 156
>gi|47229936|emb|CAG10350.1| unnamed protein product [Tetraodon nigroviridis]
Length = 243
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 59/135 (43%), Gaps = 21/135 (15%)
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 111
AN P L V + T ERD++ F YG + V I R FAFV FE E
Sbjct: 74 ANPDPNSCLGVFGLS-LYTTERDLREVFSKYGPLADVNIVYDQQSRRSRGFAFVYFENSE 132
Query: 112 EATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRR 171
++ +A E + +L R I V+Y++ R +P G Y YG S R+
Sbjct: 133 DSKEAKEHANGMELDGRRIRVDYSIT------KRAHTPTPGIYMGRPTYGSS------RQ 180
Query: 172 PSPDYGRGRSPAYDR 186
S DY RG YDR
Sbjct: 181 SSRDYYRGYDRGYDR 195
>gi|115481176|ref|NP_001064181.1| Os10g0151800 [Oryza sativa Japonica Group]
gi|18425248|gb|AAL69426.1|AC098565_8 Putative RNA-binding protein [Oryza sativa]
gi|31430199|gb|AAP52145.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113638790|dbj|BAF26095.1| Os10g0151800 [Oryza sativa Japonica Group]
gi|125574047|gb|EAZ15331.1| hypothetical protein OsJ_30749 [Oryza sativa Japonica Group]
Length = 472
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 11/134 (8%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF FV + + A A + L F D +L+V WA +G S S A Q KT+
Sbjct: 233 GFLFVEYYNHACADYAKQKLSAPNFKVDGSQLTVSWAE-PKGSSSSDSSSAAAQ--VKTI 289
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTD 121
+V N ++E+ IK FE +G V V + +R+F FV F + A KA++ ++
Sbjct: 290 YVKNLPENASKEK-IKEIFEIHGEVTKVVLPPAKAGNKRDFGFVHFAERSSALKAVKGSE 348
Query: 122 RSKLVDRVISVEYA 135
+ ++ +V+ V A
Sbjct: 349 KYEIDGQVLEVSMA 362
>gi|388505636|gb|AFK40884.1| unknown [Lotus japonicus]
Length = 344
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEA 113
+ P L+V P R +R++++HF G V+ V + R F FV +T E+A
Sbjct: 44 ENPGNNLYVTGLSP-RITKRELEKHFATEGKVIDVHLVVDPWTRESRGFGFVTMDTLEDA 102
Query: 114 TKALESTDRSKLVDRVISVEYA 135
+ ++ +RS L RVI+VE A
Sbjct: 103 NRCVKYLNRSVLEGRVITVEKA 124
>gi|440793266|gb|ELR14453.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 273
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATK 115
P TL+V RTRE D++R F +G V+ + R FAFV + EA
Sbjct: 99 PGDTLYVTGLAS-RTREADLERKFSKFGEVVKAHLVCDPRTGDSRGFAFVTMGSDTEAQD 157
Query: 116 ALESTDRSKLVDRVISVE 133
A+E +R++L R+ISVE
Sbjct: 158 AMEGGNRTELDGRIISVE 175
>gi|410976794|ref|XP_003994798.1| PREDICTED: serine/arginine-rich splicing factor 9 [Felis catus]
Length = 340
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
FAFV FED RDA DAI G + +G R R+ G RG G ++ R +
Sbjct: 173 FAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGSRGGWPRGGRNGPPTRRSDFRV 232
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 125
+++ P +D+K H G+V + ++++ V++ +E+ AL D +K
Sbjct: 233 LVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 289
>gi|391330558|ref|XP_003739725.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Metaseiulus
occidentalis]
Length = 217
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 8/136 (5%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDG---SKSMANQRPTK 66
FAFV FED RDA DA+ D + YD +L VE+ RG R R G + +R
Sbjct: 46 FAFVEFEDPRDAEDAVSARDG--YDYDGYKLRVEFPRGNSARPRGGPSRGRGPPARRSQY 103
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 125
+ V P + + D+K H G+V + + ++ V+F E+ A++ D S+
Sbjct: 104 RVIVTGLPPTGSWQ-DLKDHMREAGDVCYADVYKDGTGVVEFLRYEDMKYAVKKLDDSRF 162
Query: 126 VDRVISVEYA-LKDDS 140
V Y +K+D+
Sbjct: 163 RSHESEVSYVRVKEDT 178
>gi|121711495|ref|XP_001273363.1| transformer-SR ribonucleoprotein, putative [Aspergillus clavatus
NRRL 1]
gi|119401514|gb|EAW11937.1| transformer-SR ribonucleoprotein, putative [Aspergillus clavatus
NRRL 1]
Length = 311
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATK 115
P LFV +P R E DI R FE YG+V H + R F FV+ T E+A
Sbjct: 66 PGSNLFVTGINP-RLTESDISRLFEKYGDVENCSIMVDPHTKESRGFGFVKMVTAEQADA 124
Query: 116 ALESTDRSKLVDRVISVEYA 135
A E + R +S+E A
Sbjct: 125 AKEGLQGEVIEGRTLSIEKA 144
>gi|268561908|ref|XP_002646556.1| Hypothetical protein CBG20414 [Caenorhabditis briggsae]
Length = 308
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 23/140 (16%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG---------------ERG-- 50
A F FV F D RDA DA+RG D + +D +R+ VE RG +RG
Sbjct: 45 AAFGFVQFSDSRDADDAVRGRDG--YDFDGKRIRVELTRGSGPRGPGGRPVRDGYDRGYD 102
Query: 51 RHRDG---SKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNF-AFVQ 106
R DG +S R ++ +I P +DIK H + G++ + + RN V+
Sbjct: 103 RRDDGYGRRQSHGPPRRSENRAIIEGLPPTGSWQDIKDHLKSAGDICYADVGRNGDGIVE 162
Query: 107 FETQEEATKALESTDRSKLV 126
FE E+ A++ D +K
Sbjct: 163 FEKHEDMKYAIKKFDDTKFT 182
>gi|359478878|ref|XP_002280779.2| PREDICTED: uncharacterized protein LOC100246735 [Vitis vinifera]
Length = 330
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEA 113
+ P L+V R +R++++HF G+V V + R F FV T EEA
Sbjct: 45 ENPGNNLYVTGLS-TRVTKRELEKHFASEGSVADVHLVTDPWTRESRGFGFVTMSTVEEA 103
Query: 114 TKALESTDRSKLVDRVISVEYA 135
+ ++ DRS L RVI+VE A
Sbjct: 104 NRCIKYLDRSVLEGRVITVEKA 125
>gi|432881549|ref|XP_004073835.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Oryzias
latipes]
Length = 633
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 292 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADP---VAEPDPEVMAK---VKVL 345
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV T E +++ F +G + V+ +++AFV FE ++ A +A+E + +L
Sbjct: 346 FVRKLATAVTEEL-LEKTFSQFGKLERVKKLKDYAFVHFEERDAAVQAMEGMNGKELGGE 404
Query: 129 VISVEYALKDDSERDDR 145
I + A D +R +R
Sbjct: 405 EIEIVLAKPPDKKRKER 421
>gi|78707789|gb|ABB46764.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|78707790|gb|ABB46765.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|215694736|dbj|BAG89927.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 438
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 11/134 (8%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF FV + + A A + L F D +L+V WA +G S S A Q KT+
Sbjct: 233 GFLFVEYYNHACADYAKQKLSAPNFKVDGSQLTVSWAE-PKGSSSSDSSSAAAQ--VKTI 289
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTD 121
+V N ++E+ IK FE +G V V + +R+F FV F + A KA++ ++
Sbjct: 290 YVKNLPENASKEK-IKEIFEIHGEVTKVVLPPAKAGNKRDFGFVHFAERSSALKAVKGSE 348
Query: 122 RSKLVDRVISVEYA 135
+ ++ +V+ V A
Sbjct: 349 KYEIDGQVLEVSMA 362
>gi|225683278|gb|EEH21562.1| nuclear localization sequence-binding protein [Paracoccidioides
brasiliensis Pb03]
Length = 492
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 18/142 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE-----RGRHRDGSKSMANQR 63
GF +V F + DA A + D R+L+V++A R R + +++ +QR
Sbjct: 289 GFGYVEFTNAEDAVKAHAAKKDTEL--DGRKLNVDFANARSNAAPRDRAQSRAQNFGDQR 346
Query: 64 P--TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEA 113
+ TLF+ N E I F YG++L VR+ + F +VQF + +EA
Sbjct: 347 SPESDTLFIGNI-AFSADENMISETFAEYGSILGVRLPTDPESGRPKGFGYVQFSSIDEA 405
Query: 114 TKALESTDRSKLVDRVISVEYA 135
A ES + S+L R + ++++
Sbjct: 406 RSAFESLNGSELAGRAMRLDFS 427
>gi|380489744|emb|CCF36497.1| transformer-SR ribonucleoprotein [Colletotrichum higginsianum]
Length = 330
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 51/116 (43%), Gaps = 19/116 (16%)
Query: 37 RRRLSVEWARGERGRHRDGSKSMANQR---------PTKTLFVINFDPIRTRERDIKRHF 87
RRR + G+R R R G+K R P LFV P R E+++ R F
Sbjct: 43 RRRSASPSGNGDRDRDR-GAKDETGSRGGDDDGAINPGSNLFVTGIHP-RLTEQEVTRMF 100
Query: 88 EPYGNVL--------HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
E YG+V H + R F FV+ T ++A A E ++ R +S+E A
Sbjct: 101 EKYGDVEKCQIMRDPHTKESRGFGFVKMVTSDQADAAKEGLQGEQIEGRTLSIEKA 156
>gi|410898649|ref|XP_003962810.1| PREDICTED: transformer-2 protein homolog beta-like [Takifugu
rubripes]
Length = 277
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 60/135 (44%), Gaps = 21/135 (15%)
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 111
AN P L V + T ERD++ F YG + V I R FAFV FET E
Sbjct: 108 ANPDPNNCLGVFGLS-LYTTERDLREVFSKYGPLADVNIVYDQQSRRSRGFAFVYFETSE 166
Query: 112 EATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRR 171
++ +A E + +L R I V++++ R +P G Y YG S R+
Sbjct: 167 DSKEAKEHANGMELDGRRIRVDFSIT------KRAHTPTPGIYMGRPTYGSS------RQ 214
Query: 172 PSPDYGRGRSPAYDR 186
S DY +G YDR
Sbjct: 215 SSRDYYKGYDRGYDR 229
>gi|260949537|ref|XP_002619065.1| hypothetical protein CLUG_00224 [Clavispora lusitaniae ATCC 42720]
gi|238846637|gb|EEQ36101.1| hypothetical protein CLUG_00224 [Clavispora lusitaniae ATCC 42720]
Length = 416
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 13/135 (9%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR-HRDGSKSMANQRPTKT 67
GFA+V + + +++ G R+L ++ + GR D K ++ P++
Sbjct: 192 GFAYVDLPSAKHVDSVVSLSESVLNG---RKLLIKNSSSFEGRPEADSKKPLSKNPPSRI 248
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALES 119
LFV N T E +++ HF G+++ +R+ + FAF+ F+ + T AL+S
Sbjct: 249 LFVGNLS-FDTTEDNLEEHFRHCGDIVRIRMATFEDTGKCKGFAFIDFKDESGPTAALKS 307
Query: 120 TDRSKLVDRVISVEY 134
KL++R + +EY
Sbjct: 308 KLAKKLINRPLRLEY 322
>gi|226288243|gb|EEH43755.1| 28 kDa ribonucleoprotein [Paracoccidioides brasiliensis Pb18]
Length = 492
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 18/142 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE-----RGRHRDGSKSMANQR 63
GF +V F + DA A + D R+L+V++A R R + +++ +QR
Sbjct: 289 GFGYVEFTNAEDAVKAHAAKKDTEL--DGRKLNVDFANARSNAAPRDRAQSRAQNFGDQR 346
Query: 64 P--TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEA 113
+ TLF+ N E I F YG++L VR+ + F +VQF + +EA
Sbjct: 347 SPESDTLFIGNI-AFSADENMISETFAEYGSILGVRLPTDPESGRPKGFGYVQFSSIDEA 405
Query: 114 TKALESTDRSKLVDRVISVEYA 135
A ES + S+L R + ++++
Sbjct: 406 RSAFESLNGSELAGRAMRLDFS 427
>gi|147791022|emb|CAN63579.1| hypothetical protein VITISV_029585 [Vitis vinifera]
Length = 241
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEA 113
+ P L+V R +R++++HF G+V V + R F FV T EEA
Sbjct: 45 ENPGNNLYVTGLS-TRVTKRELEKHFASEGSVADVHLVTDPWTRESRGFGFVTMSTVEEA 103
Query: 114 TKALESTDRSKLVDRVISVEYA 135
+ ++ DRS L RVI+VE A
Sbjct: 104 NRCIKYLDRSVLEGRVITVEKA 125
>gi|403417917|emb|CCM04617.1| predicted protein [Fibroporia radiculosa]
Length = 671
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 13/117 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+ FV++E A AI+ ++ + + + +R ER + K+ +
Sbjct: 173 GYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGYHISRKERQSKLEEMKAQ-----FTNI 227
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALE 118
+V NFDP E + F+ +G+V I+R+ F FV FE +EA KA+E
Sbjct: 228 YVKNFDP-EVTEEEFMALFQQFGSVTSAVIQRDDEGRSRGFGFVNFEVHDEAQKAVE 283
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT- 67
GF FV FE +A A+ GL ++ F ++L V A+ + R ++ +S + K
Sbjct: 266 GFGFVNFEVHDEAQKAVEGLHDLDF--KGKKLFVSRAQKKAEREQELRQSYEQAKMEKMS 323
Query: 68 ------LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEAT 114
L++ N + +R + FEP+G++ ++ R+ F FV F + +EAT
Sbjct: 324 KFQGVNLYIKNLEDDLDDDRL-RTEFEPFGSITSAKVMRDEKGTSKGFGFVCFSSPDEAT 382
Query: 115 KALESTDRSKLVDRVISVEYALKDDSER 142
KA+ + + + + V A + D R
Sbjct: 383 KAVAEMNNKMIGTKPLYVSLAQRRDVRR 410
>gi|402082552|gb|EJT77570.1| hypothetical protein GGTG_02676 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 318
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 58/142 (40%), Gaps = 25/142 (17%)
Query: 18 DRDAADAIRGLDNIPFGYD-------------RRRLSVEWARGERGRHRDG---SKSMAN 61
D +AA+ R D P YD RR S + G+R +D +S+
Sbjct: 7 DYEAANGDRFEDEPPRNYDDRRSASPRNDDVVERRRSASPSNGDRSIPKDDDDRKESVGA 66
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEA 113
P LFV P R E ++ R FE YG V H + R F FV+ T E+A
Sbjct: 67 YNPGSNLFVTGIHP-RLVEAEVTRMFEKYGEVEKCQIMRDPHTQESRGFGFVKMVTPEQA 125
Query: 114 TKALESTDRSKLVDRVISVEYA 135
A+E + R +S+E A
Sbjct: 126 DAAIEGLQGEAIEGRTLSIEKA 147
>gi|189197515|ref|XP_001935095.1| multiple RNA-binding domain containing protein 1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187981043|gb|EDU47669.1| multiple RNA-binding domain containing protein 1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 825
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 25/151 (16%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRR--RLSVEWAR-----GERGRHRDGSKSMAN 61
GF FV F + A A+R +D G+D +L ++ + E R+ D +K A+
Sbjct: 646 GFGFVEFNNPETATAALRAMD----GHDLEGHKLLIKASHKGADAAEERRNEDAAKKAAS 701
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEAT 114
T +I P ++D++ F PYG + VR+ R F F +F T+ +A
Sbjct: 702 -----TKIIIKNLPFEASKKDVRALFTPYGQLRSVRVPKKFDASSRGFGFAEFTTKRDAV 756
Query: 115 KALESTDRSKLVDR--VISVEYALKDDSERD 143
A+ + + L+ R V++ A DD E++
Sbjct: 757 NAMNALKNTHLLGRRLVLAFAEAESDDPEKE 787
>gi|218184150|gb|EEC66577.1| hypothetical protein OsI_32766 [Oryza sativa Indica Group]
Length = 496
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 11/134 (8%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF FV + + A A + L F D +L+V WA +G S S A Q KT+
Sbjct: 233 GFLFVEYYNHACADYAKQKLSAPNFKVDGSQLTVSWAE-PKGSSSSDSSSAAAQ--VKTI 289
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTD 121
+V N ++E+ IK FE +G V V + +R+F FV F + A KA++ +
Sbjct: 290 YVKNLPENASKEK-IKEIFEIHGEVTKVVLPPAKAGNKRDFGFVHFAERSSALKAVKGNE 348
Query: 122 RSKLVDRVISVEYA 135
+ ++ +V+ V A
Sbjct: 349 KYEIDGQVLEVSMA 362
>gi|68075657|ref|XP_679748.1| splicing factor [Plasmodium berghei strain ANKA]
gi|56500569|emb|CAH96908.1| splicing factor, putative [Plasmodium berghei]
Length = 287
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSM---- 59
++ A FAF+ FED RDAADAI+ D FG ++ R+ V + + G++ + M
Sbjct: 42 TVSGAAFAFIEFEDARDAADAIKEKDGCDFGGNKLRVEVPFNARDNGKYNSRGRGMMGRG 101
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN 101
+ R + + ++ P+ +D+K H G H + +N
Sbjct: 102 SKSRRGRYVVEVSGLPLSGSWQDLKDHLREAGECGHADVFKN 143
>gi|412990000|emb|CCO20642.1| predicted protein [Bathycoccus prasinos]
Length = 992
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 17/154 (11%)
Query: 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHR---DGSKSMA 60
SL GF FV FE A+ + + D + LS+E +R + R D + ++A
Sbjct: 794 SLLSKGFGFVEFESHETASICSKLVSTGIGKLDGKVLSIELSRQKMSRETVEDDNTNALA 853
Query: 61 -------NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQ 106
+ + T V+ +RD++ F P+G + VR+ R FAF++
Sbjct: 854 MKKKSKIPKGKSATKLVLRNVAFEATKRDVQLLFNPFGVLKSVRVPKKFDGSHRGFAFIE 913
Query: 107 FETQEEATKALESTDRSKLVDRVISVEYALKDDS 140
+ TQ EAT A+++ + L R +E A +D++
Sbjct: 914 YTTQREATDAMDALGNAHLYGRKCVIERADEDET 947
>gi|345320008|ref|XP_001511604.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R
[Ornithorhynchus anatinus]
Length = 479
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AFV FE + A KA++ + +L
Sbjct: 344 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKELEGE 402
Query: 129 VISVEYALKDDSERDDR 145
I + A D +R +R
Sbjct: 403 EIEIVLAKPPDKKRKER 419
>gi|170087376|ref|XP_001874911.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650111|gb|EDR14352.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 297
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 75 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134
P R D+ + F+ YG ++ R+ F FV+FE ++A A+ + + + I VE+
Sbjct: 11 PTDARSDDVSKFFDGYGRIIDCRVMTGFGFVEFENAKDAEDAVHNFNGKPFMGVNIVVEF 70
Query: 135 ALKDDSERDDRYDSPRRGGYGRHSPYGRSP 164
A K+ R + YD+ R GG G +P R P
Sbjct: 71 A-KESRPRREVYDNDRGGG-GHGAPRSRRP 98
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 15/142 (10%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR------HRDGSKSMA- 60
GF FV FE+ +DA DA+ + PF + VE+A+ R R R G A
Sbjct: 36 TGFGFVEFENAKDAEDAVHNFNGKPFM--GVNIVVEFAKESRPRREVYDNDRGGGGHGAP 93
Query: 61 -NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNF---AFVQFETQEEATKA 116
++RP +++ T +D+K G+V I R+ +++ ++E+A +A
Sbjct: 94 RSRRPPGIRLIVSGVSRDTSWQDLKDFGRDAGSVSFADIDRDVPGQGVLEYLSREDADRA 153
Query: 117 LESTDRSKLVDRVISVEYALKD 138
++ D L R + V AL D
Sbjct: 154 VKELDGKDLRGRPVRV--ALDD 173
>gi|302791860|ref|XP_002977696.1| hypothetical protein SELMODRAFT_107678 [Selaginella moellendorffii]
gi|300154399|gb|EFJ21034.1| hypothetical protein SELMODRAFT_107678 [Selaginella moellendorffii]
Length = 298
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 12/127 (9%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG-----RHRD-GSKSMANQ 62
G+ F+ FED RDA DAIRG D + +D RL VE A G RG R+ G + +
Sbjct: 45 GYCFIEFEDVRDAEDAIRGRDG--YNFDGYRLRVEIAHGGRGPPSSDRYSSYGGRGGSVS 102
Query: 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALE 118
R ++ +I P +D+K H G+V ++ R V F ++ A++
Sbjct: 103 RRSEYRVIITGLPSSASWQDLKDHMRRAGDVCFAQVFREGNGTTGIVDFTNYDDMKYAIK 162
Query: 119 STDRSKL 125
D S+
Sbjct: 163 KLDDSEF 169
>gi|281206481|gb|EFA80667.1| hypothetical protein PPL_06250 [Polysphondylium pallidum PN500]
Length = 931
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 24/137 (17%)
Query: 9 GFAFVYFEDDRDAADAIRGLDN-IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
GF FV ++ A DAI L + + G +++ ++++ +R RH P T
Sbjct: 92 GFGFVEYQSVNQALDAISQLQSTMVMG---KKIFIDFSSSKRERH-----------PMST 137
Query: 68 LFV-------INFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALE 118
+ IN+D T D+K F G ++H ++ + FV++ T EEA +A+
Sbjct: 138 IITPKAPRVYINYDNESTHPNDLKALFSSVGEIIHNHFVDKKGYGFVEYATVEEAERAIS 197
Query: 119 STDRSKLVDRVISVEYA 135
++ +R + V YA
Sbjct: 198 QYHGYEIHNRKLLVNYA 214
>gi|336472231|gb|EGO60391.1| hypothetical protein NEUTE1DRAFT_107026 [Neurospora tetrasperma
FGSC 2508]
gi|350294548|gb|EGZ75633.1| RNA-binding domain-containing protein [Neurospora tetrasperma FGSC
2509]
Length = 343
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 51/124 (41%), Gaps = 16/124 (12%)
Query: 20 DAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTR 79
D D+ R P G DR E +G DG+++ P LFV P R
Sbjct: 35 DGHDSSRRRSMSPNGNDRAPAKDEGQ--SKGGEEDGARN-----PGSNLFVTGIHP-RLE 86
Query: 80 ERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 131
E ++ R FE YG V +I R F FV+ T E+A A E + R +S
Sbjct: 87 EAEVTRLFEKYGEVEKCQIMKDPHTGESRGFGFVKMMTPEQANAAKEGLQGEVIEGRTLS 146
Query: 132 VEYA 135
+E A
Sbjct: 147 IEMA 150
>gi|46362505|gb|AAH66570.1| Synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
Length = 560
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 288 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADP---IEDPDPEVMAK---VKVL 341
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AF+ FE ++ A KAL L
Sbjct: 342 FVRNLASTVTEEL-LEKTFCQFGKLERVKKLKDYAFIHFEERDGAVKALAELHGKDLEGE 400
Query: 129 VISVEYALKDDSERDDR 145
I + +A D +R +R
Sbjct: 401 PIEIVFAKPPDQKRKER 417
>gi|16944647|emb|CAC28728.2| conserved hypothetical protein [Neurospora crassa]
Length = 343
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 51/124 (41%), Gaps = 16/124 (12%)
Query: 20 DAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTR 79
D D+ R P G DR E +G DG+++ P LFV P R
Sbjct: 35 DGHDSSRRRSMSPNGNDRAPAKDEGQ--SKGGEEDGARN-----PGSNLFVTGIHP-RLE 86
Query: 80 ERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 131
E ++ R FE YG V +I R F FV+ T E+A A E + R +S
Sbjct: 87 EAEVTRLFEKYGEVEKCQIMKDPHTGESRGFGFVKMMTPEQANAAKEGLQGEVIEGRTLS 146
Query: 132 VEYA 135
+E A
Sbjct: 147 IEMA 150
>gi|357144466|ref|XP_003573302.1| PREDICTED: APOBEC1 complementation factor-like [Brachypodium
distachyon]
Length = 476
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 19/191 (9%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF FV + + A + + L + F D +L+V WA +G S S ++ KT+
Sbjct: 235 GFLFVEYYNHACADYSRQKLSSPDFKVDGSQLTVSWAE-PKGSSSSSSDSSSSAAQVKTI 293
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTD 121
+V N P + +K FE +G V + + +R+F FV F + A KA++ ++
Sbjct: 294 YVKNL-PENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 352
Query: 122 RSKLVDRVISVEYALKDDSERDD---------RYDSPRRGGYGRHSPYGRSPSPAYRRRP 172
+ ++ +V+ V A ++ D Y P GGY +P
Sbjct: 353 KYEIDGQVLEVSMAKPLSDKKPDHSVRPGGPPNYPLPPYGGYMGDPYGAYGGGGPGFNQP 412
Query: 173 SPDYGRGRSPA 183
YGRG +PA
Sbjct: 413 MI-YGRGPAPA 422
>gi|345564397|gb|EGX47360.1| hypothetical protein AOL_s00083g453 [Arthrobotrys oligospora ATCC
24927]
Length = 869
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 93/215 (43%), Gaps = 30/215 (13%)
Query: 40 LSVE---WARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 96
L+VE A+GE GR GS+ LF+ N R +RD+ F +G + +
Sbjct: 363 LAVERDYVAKGEWGRFPVGSR----------LFIGNLSADRVNKRDVYHIFAQHGKLAQI 412
Query: 97 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSER-----DDRYDSPRR 151
I++ + FVQF TKAL + L R + +E + S R + R + RR
Sbjct: 413 SIKQAYGFVQFFDVTSCTKALRQEQGTPLRGRQMHLEISKPQRSSRSGDQVNARVSTNRR 472
Query: 152 GGYGRHSPYGRSPSPAYRRRPSPDYG-RGRSPAYDRYNGP-VYDQRRSPDHGRHRSPVPV 209
R+ +YR + YG R R R NG D+ R R SP P
Sbjct: 473 SRSPEEPMSPRNRGSSYRGQ---GYGDRDRESRNSRDNGTRGRDEYRPVGERRMSSPRPQ 529
Query: 210 YDRRRSPDYGRN------RSPNFGRYRSRSPVRRS 238
Y R R YGR+ RSP GRYRS+SP RS
Sbjct: 530 YVRERDDYYGRDYNRDRSRSPR-GRYRSQSPPHRS 563
>gi|430813261|emb|CCJ29365.1| unnamed protein product [Pneumocystis jirovecii]
Length = 272
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 59 MANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQ 110
+A + P LF+ P R E++++ F +GNV+ I R F FV T
Sbjct: 59 VAAENPGTNLFISGIAP-RMDEKELEEIFSRFGNVVKCSIVSDPYTKESRGFGFVTMATP 117
Query: 111 EEATKALESTDRSKLVDRVISVEYA 135
E+A KA+E+ + + RV SVE A
Sbjct: 118 EDADKAIEAANGQEYYGRVFSVEKA 142
>gi|158828228|gb|ABW81106.1| putRNAbp29 [Cleome spinosa]
Length = 338
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEA 113
+ P +L+V R +RD++ HF G V+ V + R F FV E E+A
Sbjct: 40 ENPGNSLYVTGLS-HRVTKRDLEDHFSKEGKVVDVNLVLDPWTRESRGFGFVTMENMEDA 98
Query: 114 TKALESTDRSKLVDRVISVEYA 135
+ ++ DRS L R+I+VE A
Sbjct: 99 NRCIKYLDRSVLEGRIITVEKA 120
>gi|310790005|gb|EFQ25538.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 846
Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR-----GERGRHRDGSKSMANQR 63
GF FV F+ A A++ +D F + L+V+ + E R D ++ A QR
Sbjct: 663 GFGFVIFKTKEQAQAALKTMDG--FVLEGHTLAVKGSHKGQDAAEERRREDKARKAAGQR 720
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKA 116
T VI P ++DI+ F YG + VR+ R FAF +F T EA A
Sbjct: 721 ---TKIVIKNLPFEATKKDIRTLFGTYGQLRAVRLPKKFGNSTRGFAFAEFVTPREAENA 777
Query: 117 LESTDRSKLVDRVISVEY 134
L + + L+ R + ++Y
Sbjct: 778 LNALRDTHLLGRRLVLDY 795
Score = 40.8 bits (94), Expect = 0.50, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 54 DGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQ 106
+ + ++A + LFV N P T E D++ HF YG + V + + FA VQ
Sbjct: 306 EDNDTLATIKRNARLFVRNL-PFSTNEDDLQTHFGQYGELQEVHLPVTAAGASKGFAMVQ 364
Query: 107 FETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYD 147
F + E A A +STD R++ V L + +RD D
Sbjct: 365 FMSGESAVAAFQSTDGQTFQGRLLHV---LPAEGKRDAGLD 402
>gi|212526968|ref|XP_002143641.1| pre-RNA splicing factor Srp2, putative [Talaromyces marneffei ATCC
18224]
gi|210073039|gb|EEA27126.1| pre-RNA splicing factor Srp2, putative [Talaromyces marneffei ATCC
18224]
Length = 261
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 82/185 (44%), Gaps = 28/185 (15%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRR--RLSVEWARGERGRHRDGSKS--MANQRP 64
GF F+ +ED DA D +P G D + RL+V++ARG R + S + RP
Sbjct: 3 GFGFIEYEDAMDARDV------VPDGSDFKGERLTVQFARGPRHKETFNGPSDRPSAPRP 56
Query: 65 TKTLFVINFD--PIRTRERDIKRHFEPYG-NVLH---VRIRRNFAFVQFETQEEATKALE 118
+T+F + P T +D+K G +V++ R R FV+FE+ + A+E
Sbjct: 57 RRTVFRMQVSGLPTETSWQDLKDFARQSGLDVVYSETTRERDGRGFVEFESHADLKTAVE 116
Query: 119 STDRSKLVDRVISVEYALKDDSERDDRYD-----SPRRGGYG-------RHSPYGRSPSP 166
D +L ++ ++ ER D SP R GY R P G SP P
Sbjct: 117 KLDGRELKGSQVTCVADVQPAEERPPYRDPYRSRSPPRRGYPPTDEYDRRGPPRGYSPRP 176
Query: 167 AYRRR 171
YR R
Sbjct: 177 HYRER 181
>gi|41054427|ref|NP_955973.1| synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
gi|28422490|gb|AAH46902.1| Synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
Length = 560
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 288 GFCFLGYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADP---IEDPDPEVMAK---VKVL 341
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AF+ FE ++ A KAL L
Sbjct: 342 FVRNLASTVTEEL-LEKTFCQFGKLERVKKLKDYAFIHFEERDGAVKALAELHGKDLEGE 400
Query: 129 VISVEYALKDDSERDDR 145
I + +A D +R +R
Sbjct: 401 PIEIVFAKPPDQKRKER 417
>gi|326490421|dbj|BAJ84874.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326522680|dbj|BAJ88386.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 286
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 13/128 (10%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR-------HRDGSKSMAN 61
GFAFV FED RDA DAI+G D + +D RL VE A G R H G +
Sbjct: 46 GFAFVEFEDPRDAEDAIQGRDG--YNFDGNRLRVELAHGGRANSSSLPNSHGGGGRRGGV 103
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKAL 117
R T+ ++ P +D+K H G+V + R V + ++ A+
Sbjct: 104 SRHTEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSEVYREGGGTIGIVDYTNYDDMKYAI 163
Query: 118 ESTDRSKL 125
D ++
Sbjct: 164 RKLDDTEF 171
>gi|70947849|ref|XP_743501.1| splicing factor [Plasmodium chabaudi chabaudi]
gi|56523027|emb|CAH75823.1| splicing factor, putative [Plasmodium chabaudi chabaudi]
Length = 283
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSM---- 59
++ A FAF+ FED RDAADAI+ D FG ++ R+ V + + G++ + M
Sbjct: 42 TVSGAAFAFIEFEDARDAADAIKEKDGCDFGGNKLRVEVPFNARDNGKYSSRGRGMMGRG 101
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN 101
+ R + + ++ P+ +D+K H G H + +N
Sbjct: 102 SKSRRGRYVVEVSGLPLSGSWQDLKDHLREAGECGHADVFKN 143
>gi|295672357|ref|XP_002796725.1| 28 kDa ribonucleoprotein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283705|gb|EEH39271.1| 28 kDa ribonucleoprotein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 474
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 18/142 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE-----RGRHRDGSKSMANQR 63
GF +V F + DA A + D R+L+V++A R R + +++ +Q+
Sbjct: 273 GFGYVEFTNAEDAVKAHAAKKDTEL--DGRKLNVDFANARSNAAPRDRAQSRAQNFGDQK 330
Query: 64 P--TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEA 113
+ TLF+ N E I F YG++L VR+ + F +VQF + +EA
Sbjct: 331 SPESDTLFIGNI-AFSADESMISETFAEYGSILGVRLPTDPESGRPKGFGYVQFSSIDEA 389
Query: 114 TKALESTDRSKLVDRVISVEYA 135
A ES + S+L R + ++++
Sbjct: 390 RSAFESLNGSELAGRAMRLDFS 411
>gi|402226431|gb|EJU06491.1| RNA-binding domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 304
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEAT 114
+ T L V +RT ERD++ F YG V HV I R F F+Q T E+AT
Sbjct: 69 KATNVLGVFGL-SVRTVERDLEELFNQYGTVEHVTIVYDQRSDRSRGFGFIQMATVEDAT 127
Query: 115 KALESTDRSKLVDRVISVEYALKD 138
K + + + R I V+Y++ +
Sbjct: 128 KCISELNGRDVNGRNIRVDYSVTE 151
>gi|405966302|gb|EKC31602.1| Heterogeneous nuclear ribonucleoprotein C [Crassostrea gigas]
Length = 439
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 18/140 (12%)
Query: 55 GSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLHVRI-RRNFAFVQFETQEE 112
GS ++ + K +F+ N + + +++ FE YG +L + R F F+QF +EE
Sbjct: 114 GSTNIQDLELMKARVFIGNLPFDKVTKEELENMFEKYGKILGISTHERGFGFIQFSKEEE 173
Query: 113 ATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYG---RHSPYGRSPSP-AY 168
+A+++ D L + V+ AL+ RRGG R +P G SP P A
Sbjct: 174 GLEAVKNEDGGLLKGHKLDVKMALEG-----------RRGGGKPPPRGNPRGASPGPYAD 222
Query: 169 RRRPSPDYGRGRSPAY-DRY 187
R P P G PA DRY
Sbjct: 223 RFVPPPGSRDGHPPATEDRY 242
>gi|346468507|gb|AEO34098.1| hypothetical protein [Amblyomma maculatum]
Length = 280
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 18/115 (15%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136
+ RERD+ R F+ YG V + ++ F FV+FE +A A++ + +L+ +SVE A
Sbjct: 13 QVRERDVDRFFKGYGRVGDIHLKNGFGFVEFEDHRDADDAIKDLNGKELLGERVSVELA- 71
Query: 137 KDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPV 191
RRG P GR +P R SP GR +P R+ PV
Sbjct: 72 ----------HGSRRG------PGGRIVAPGSRDWRSPP-GRFNAPRESRFGPPV 109
Score = 36.6 bits (83), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49
GF FV FED RDA DAI+ L+ + R+SVE A G R
Sbjct: 37 GFGFVEFEDHRDADDAIKDLNGKELLGE--RVSVELAHGSR 75
>gi|41055184|ref|NP_957491.1| transformer-2 protein homolog beta [Danio rerio]
gi|29124601|gb|AAH49051.1| Splicing factor, arginine/serine-rich, 10 [Danio rerio]
Length = 278
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 69/159 (43%), Gaps = 24/159 (15%)
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 111
AN P L V + T ERD++ F YG + V I R FA V FE +E
Sbjct: 117 ANPDPNCCLGVFGLS-LYTTERDLREVFSKYGPLSDVCIVYDQQSRRSRGFALVYFENRE 175
Query: 112 EATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRR 171
++ +A E + +L R I V+Y++ +P G Y YG PS + RRR
Sbjct: 176 DSKEAKERANGMELDGRRIRVDYSITKGPH------TPTPGIYMGRPTYGGGPSVS-RRR 228
Query: 172 PSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVY 210
S Y RG YD Y + R + R RSP P Y
Sbjct: 229 DS--YDRGYERGYDSY------EDRDYHNNRRRSPSPYY 259
>gi|242080305|ref|XP_002444921.1| hypothetical protein SORBIDRAFT_07g001490 [Sorghum bicolor]
gi|241941271|gb|EES14416.1| hypothetical protein SORBIDRAFT_07g001490 [Sorghum bicolor]
Length = 484
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 13/134 (9%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF FV + + A A L + F D +L+V WA E D S + A KT+
Sbjct: 243 GFLFVEYYNHACAEYARLKLSSRNFKVDGSQLTVSWA--EPKGQTDPSSAAAQ---VKTI 297
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTD 121
+V N P + IK F+ +G V + + +R+F FV F + A KA++ ++
Sbjct: 298 YVKNL-PENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSE 356
Query: 122 RSKLVDRVISVEYA 135
+ ++ +V+ V A
Sbjct: 357 KYEIDGQVLEVSMA 370
>gi|367029667|ref|XP_003664117.1| hypothetical protein MYCTH_2306567 [Myceliophthora thermophila ATCC
42464]
gi|347011387|gb|AEO58872.1| hypothetical protein MYCTH_2306567 [Myceliophthora thermophila ATCC
42464]
Length = 296
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 86/202 (42%), Gaps = 23/202 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR-HRDGSKSMANQRPTKT 67
GF F+ ++D DA D + F +R L+V++ARG R R H S R T
Sbjct: 43 GFGFIEYKDAMDARDVVPAFHGSDFMGER--LTVQFARGSRHREHGHDRNSAPRPRRTPH 100
Query: 68 LFVINFDPIRTRERDIKRHFEPYG-NVLHVRIRRNFA---FVQFETQEEATKALESTDRS 123
I P T +D+K G +V++ RN FV+FET + A+E D
Sbjct: 101 RMQITGLPNDTSWQDLKDFARQSGADVVYSETNRNGGTEGFVEFETAADLRTAVEKLDGR 160
Query: 124 KLVDRVISVEYALKDDSERDDR--YDSPRRGGYGRHSPYGRSPSPA--YRRRPSPDYGRG 179
+ + ++ A + D R DR SPRR + P P P Y RR P RG
Sbjct: 161 EFKNVRVTCIAATQPDYPRGDRGRSRSPRR-----YLP----PPPVDDYDRRGPP---RG 208
Query: 180 RSPAYDRYNGPVYDQRRSPDHG 201
SP D Y P Y R P G
Sbjct: 209 YSPRRDGYREPTYRYRSPPRRG 230
>gi|291190904|ref|NP_001167419.1| RNA-binding protein 4 [Salmo salar]
gi|223648750|gb|ACN11133.1| RNA-binding protein 4 [Salmo salar]
Length = 316
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 17/138 (12%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
+ FV+ ++ +A A+ L + R++VE+A R ++
Sbjct: 37 YGFVHMNEEEEAQKAVAELHKHEL--NGARITVEFA-------------TTKVRNATKIY 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N P T I+ F+P+G V+ I +NFAFV + + EA +A+ + SK+ +
Sbjct: 82 VGNV-PEGTTAAKIRELFQPFGKVVECDIVKNFAFVHMQRENEAYEAISKLNHSKMEGQK 140
Query: 130 ISVEYALKDDSERDDRYD 147
I V + +++ R+ R D
Sbjct: 141 IFVSIS-RNNQARNGRGD 157
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+FV N + T E +++ FE YG V I +N+ FV +EEA KA+ + +L
Sbjct: 4 IFVGNVNS-STTESELRTLFEKYGQVSDCDILKNYGFVHMNEEEEAQKAVAELHKHELNG 62
Query: 128 RVISVEYA 135
I+VE+A
Sbjct: 63 ARITVEFA 70
>gi|302306417|ref|NP_982813.2| ABL134Cp [Ashbya gossypii ATCC 10895]
gi|299788506|gb|AAS50637.2| ABL134Cp [Ashbya gossypii ATCC 10895]
gi|374106015|gb|AEY94925.1| FABL134Cp [Ashbya gossypii FDAG1]
Length = 375
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 21/139 (15%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR-HRDGSKSMANQRPTKT 67
GFA+V F DA+ GL + R L ++ A+ GR ++ SM+ P++
Sbjct: 161 GFAYVDFATSAQM-DAVIGLSEAQL--NGRNLLIKNAKSYDGRPAKNDLISMSKNPPSRI 217
Query: 68 LFV--INFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKAL 117
LFV ++FD T + +K+HF+ G ++ +R+ + FAFV F + AT AL
Sbjct: 218 LFVGNLSFD---TTDELLKKHFQHCGEIVKIRMATFQDSGKCKGFAFVDFRDEAGATAAL 274
Query: 118 ESTDRS--KLVDRVISVEY 134
TDRS + R + +EY
Sbjct: 275 --TDRSCRAIAGRPLRMEY 291
>gi|407929152|gb|EKG21988.1| MFS pantothenate transporter [Macrophomina phaseolina MS6]
Length = 345
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 65/140 (46%), Gaps = 19/140 (13%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR-----GERGRHRDGSKSMANQR 63
GF +V FE+D AA AI ++ D RRL+V+ R ER R R+ +
Sbjct: 203 GFGYVEFENDDSAAVAIVQMNQRVI--DGRRLTVQHHRRREQTEERPRRRNEGRVNP--- 257
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P+KTLF+ N +RD+ F NVL VR+ R FA F + ATK
Sbjct: 258 PSKTLFIGNMS-FEMSDRDLNDLFRNIRNVLDVRVAIDRRTGQPRGFAHADFIDETSATK 316
Query: 116 ALESTDRSKLVDRVISVEYA 135
A E + +L R + V+Y
Sbjct: 317 AKELLSQKELYGRRLRVDYT 336
>gi|330935683|ref|XP_003305080.1| hypothetical protein PTT_17827 [Pyrenophora teres f. teres 0-1]
gi|311318026|gb|EFQ86793.1| hypothetical protein PTT_17827 [Pyrenophora teres f. teres 0-1]
Length = 825
Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 25/151 (16%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRR--RLSVEWAR-----GERGRHRDGSKSMAN 61
GF FV F A A+R +D G+D +L ++ + E R+ D +K A+
Sbjct: 646 GFGFVEFNSPETATAALRAMD----GHDLEGHKLLIKASHKGADAAEERRNEDAAKKAAS 701
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEAT 114
T +I P ++D++ F PYG + VR+ R F F +F T+ +A
Sbjct: 702 -----TKIIIKNLPFEASKKDVRALFTPYGQLRSVRVPKKFDASSRGFGFAEFTTKRDAV 756
Query: 115 KALESTDRSKLVDR--VISVEYALKDDSERD 143
A+ + + L+ R V++ A DD E++
Sbjct: 757 NAMNALKNTHLLGRRLVLAFAEAESDDPEKE 787
>gi|392868156|gb|EJB11446.1| transformer-SR ribonucleoprotein, variant [Coccidioides immitis RS]
Length = 288
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 51 RHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNF 102
R +D S AN LFV P R E D+ R FE YG+V H + R F
Sbjct: 53 RMKDDDASAANT--GTNLFVTGIHP-RLTEADVSRLFEKYGDVQNCSIMLDPHTKESRGF 109
Query: 103 AFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138
FV T ++A A E + R +S+E A ++
Sbjct: 110 GFVNMATSDQAEAAKEGLQGESIEGRTLSIEKARRN 145
>gi|428673079|gb|EKX73992.1| pre-mRNA splicing factor, putative [Babesia equi]
Length = 325
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 10/141 (7%)
Query: 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR-- 63
+Y +AF+ FE R A DA+ D F DR RL VE+A GE+ R S ++
Sbjct: 51 NYTSYAFIEFESVRSAEDAVECRDGYEF--DRYRLRVEFA-GEKKSRRHPRSSYEDRGSR 107
Query: 64 ---PTKTLF--VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALE 118
PT+T + VI+ P R + +K H G V +V I+ +V F + + AL
Sbjct: 108 YPPPTRTDYRLVISNLPHGCRWQHLKDHMRKAGPVGYVNIQHGRGYVDFMHKSDMKYALR 167
Query: 119 STDRSKLVDRVISVEYALKDD 139
D ++L S +K D
Sbjct: 168 KLDGTELSTSEDSARIRIKKD 188
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR-------NFAFVQFETQEE 112
AN+ P+ +FV N P + +RDI F+ YG + + I+ ++AF++FE+
Sbjct: 8 ANRSPS-CVFVGNL-PEKVDDRDIHEIFDKYGEIRDIDIKHGKTSNYTSYAFIEFESVRS 65
Query: 113 ATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRG 152
A A+E D + + VE+A + S R R RG
Sbjct: 66 AEDAVECRDGYEFDRYRLRVEFAGEKKSRRHPRSSYEDRG 105
>gi|239609512|gb|EEQ86499.1| transformer-SR ribonucleoprotein [Ajellomyces dermatitidis ER-3]
gi|327350257|gb|EGE79114.1| transformer-SR ribonucleoprotein [Ajellomyces dermatitidis ATCC
18188]
Length = 315
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 67/169 (39%), Gaps = 54/169 (31%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATKALE 118
LFV P R E D+ R FE YG+V H + R F FV+ T E+A A E
Sbjct: 73 NLFVTGIHP-RLTESDVSRLFEKYGDVENCSIMVDPHTKESRGFGFVKMVTSEQADAAKE 131
Query: 119 STDRSKLVDRVISVEYALKD-------------------------DSERDDRYDSPRRGG 153
+ R +S+E A + R DRYD RRGG
Sbjct: 132 GLQGEVIEGRTLSIEKARRGRPRTPTPGKYFGPPKRGTAFGRGPPRGGRYDRYDD-RRGG 190
Query: 154 YGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGR 202
YG + GR P +YR YGR YD YN RS D+GR
Sbjct: 191 YG--ASGGRRPDDSYR------YGR-----YDSYN------ERSRDYGR 220
>gi|303323191|ref|XP_003071587.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240111289|gb|EER29442.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320033282|gb|EFW15230.1| transformer-SR ribonucleoprotein [Coccidioides posadasii str.
Silveira]
Length = 271
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 51 RHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNF 102
R +D S AN LFV P R E D+ R FE YG+V H + R F
Sbjct: 53 RMKDDDASAANT--GTNLFVTGIHP-RLTEADVSRLFEKYGDVQNCSIMLDPHTKESRGF 109
Query: 103 AFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
FV T ++A A E + R +S+E A
Sbjct: 110 GFVNMATSDQAEAAKEGLQGESIEGRTLSIEKA 142
>gi|66801305|ref|XP_629578.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|60462955|gb|EAL61152.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 306
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 56 SKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQF 107
S + +Q TL V N +P RTRE D++ F G V+ I R F FV +
Sbjct: 61 SDNNVDQNNGNTLHVSNLNP-RTRESDLRDTFASIGKVIDCTILLDPNTKESRGFGFVTY 119
Query: 108 ETQEEATKALESTDRSKLVDRVISVE 133
+ +EA A++ D +K+ I VE
Sbjct: 120 SSGDEAQDAIQRLDSTKIDGNTIRVE 145
>gi|72160170|ref|XP_788983.1| PREDICTED: uncharacterized protein LOC584006 [Strongylocentrotus
purpuratus]
Length = 300
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 63/143 (44%), Gaps = 24/143 (16%)
Query: 59 MANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN---FAFVQFETQEEATK 115
M +Q L+V + + T++ D++R F YG+++ + + RN FAFV+FET +A
Sbjct: 1 MKDQFLAGRLYVGSLNHSTTKD-DVEREFGKYGHLVDIWMARNPPGFAFVEFETAGQAEA 59
Query: 116 ALESTDRSKLVDRVISVEYALKDD--------------------SERDDRYDSPRRGGYG 155
AL+ + + I VE + + RYDS R G G
Sbjct: 60 ALKELNGRTFLGNRIMVEPSRAQNGRGGRGGGSGGGRGGGGGGGGGGGGRYDSRRDGDRG 119
Query: 156 RHSPYGRSPSPAYRRRPSPDYGR 178
R RSP YR P DYGR
Sbjct: 120 RTGGPPRSPRGQYRDYPPSDYGR 142
>gi|55792397|gb|AAV65309.1| splicing factor SF2-like protein [Hordeum vulgare subsp. vulgare]
Length = 245
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 16/127 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR-------HRDGSKSMAN 61
GFAFV FED RDA DAI+G D + +D RL VE A G R H G +
Sbjct: 46 GFAFVEFEDPRDAEDAIQGRDG--YNFDGNRLRVELAHGGRANSSSLPNSHGGGGRRGGV 103
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFA-------FVQFETQEEAT 114
R T+ ++ P +D+K H G+V + R + ++ + A
Sbjct: 104 SRHTEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSEVYREVVGTIGIVDYTNYDDMKYAI 163
Query: 115 KALESTD 121
+ L+ T+
Sbjct: 164 RKLDDTE 170
>gi|119189299|ref|XP_001245256.1| hypothetical protein CIMG_04697 [Coccidioides immitis RS]
gi|392868155|gb|EJB11445.1| transformer-SR ribonucleoprotein [Coccidioides immitis RS]
Length = 271
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 51 RHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNF 102
R +D S AN LFV P R E D+ R FE YG+V H + R F
Sbjct: 53 RMKDDDASAANT--GTNLFVTGIHP-RLTEADVSRLFEKYGDVQNCSIMLDPHTKESRGF 109
Query: 103 AFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
FV T ++A A E + R +S+E A
Sbjct: 110 GFVNMATSDQAEAAKEGLQGESIEGRTLSIEKA 142
>gi|41053933|ref|NP_956250.1| ras GTPase-activating protein-binding protein 1 [Danio rerio]
gi|28279661|gb|AAH45874.1| GTPase activating protein (SH3 domain) binding protein 1 [Danio
rerio]
Length = 477
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR-----NFAFVQFETQEEATKALESTDR 122
LFV N P + ++K FE YG VL +RI NF FV F+ E K L +
Sbjct: 345 LFVGNV-PHDVDKNELKEFFEQYGTVLELRINSGGKLPNFGFVVFDDSEPVQKILNNRPI 403
Query: 123 SKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYR----RRPSPDYGR 178
D ++VE + DR D RG G G S P R ++PS GR
Sbjct: 404 KLRGDVRLNVEEKKTRSAREGDRRDIRPRGPGGPRDRIGGSRGPPTRGGMAQKPSFGAGR 463
Query: 179 GRSPAYDRYNGP 190
G P+ RY GP
Sbjct: 464 GTGPSEGRYTGP 475
>gi|410911698|ref|XP_003969327.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Takifugu
rubripes]
Length = 629
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 288 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADP---VAEPDPEVMAK---VKVL 341
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AFV FE ++ A +A++ + ++
Sbjct: 342 FVRNLATAVTEEL-LEKTFAQFGKLERVKKLKDYAFVHFEERDAAVRAMDEMNGKEVGGE 400
Query: 129 VISVEYALKDDSERDDR 145
I + A D +R +R
Sbjct: 401 EIEIVLAKPPDKKRKER 417
>gi|261196578|ref|XP_002624692.1| transformer-SR ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
gi|239595937|gb|EEQ78518.1| transformer-SR ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
Length = 312
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 67/169 (39%), Gaps = 54/169 (31%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATKALE 118
LFV P R E D+ R FE YG+V H + R F FV+ T E+A A E
Sbjct: 70 NLFVTGIHP-RLTESDVSRLFEKYGDVENCSIMVDPHTKESRGFGFVKMVTSEQADAAKE 128
Query: 119 STDRSKLVDRVISVEYALKD-------------------------DSERDDRYDSPRRGG 153
+ R +S+E A + R DRYD RRGG
Sbjct: 129 GLQGEVIEGRTLSIEKARRGRPRTPTPGKYFGPPKRGTAFGRGPPRGGRYDRYDD-RRGG 187
Query: 154 YGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGR 202
YG + GR P +YR YGR YD YN RS D+GR
Sbjct: 188 YG--ASGGRRPDDSYR------YGR-----YDSYN------ERSRDYGR 217
>gi|223648358|gb|ACN10937.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 635
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA D MA K L
Sbjct: 293 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPD---VMAK---VKVL 346
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV T E +++ F +G + V+ +++AFV FE ++ A KA+ + +L
Sbjct: 347 FVRKLATPVTEEL-LEKTFSAFGKLERVKKLKDYAFVHFEDRDAAVKAMSEMNGKELGGE 405
Query: 129 VISVEYALKDDSERDDR 145
I + A D +R +R
Sbjct: 406 EIEIVLAKPPDKKRKER 422
>gi|85099136|ref|XP_960722.1| hypothetical protein NCU04164 [Neurospora crassa OR74A]
gi|28922241|gb|EAA31486.1| predicted protein [Neurospora crassa OR74A]
Length = 396
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 51/124 (41%), Gaps = 16/124 (12%)
Query: 20 DAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTR 79
D D+ R P G DR E +G DG+++ P LFV P R
Sbjct: 35 DGHDSSRRRSMSPNGNDRAPAKDEGQ--SKGGEEDGARN-----PGSNLFVTGIHP-RLE 86
Query: 80 ERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 131
E ++ R FE YG V +I R F FV+ T E+A A E + R +S
Sbjct: 87 EAEVTRLFEKYGEVEKCQIMKDPHTGESRGFGFVKMMTPEQANAAKEGLQGEVIEGRTLS 146
Query: 132 VEYA 135
+E A
Sbjct: 147 IEMA 150
>gi|328769593|gb|EGF79636.1| hypothetical protein BATDEDRAFT_19718 [Batrachochytrium
dendrobatidis JAM81]
Length = 431
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 10/135 (7%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF +V FE DA A L R+ V + R +R G K PT TL
Sbjct: 225 GFGYVTFES-ADALTAAMALTGTELDGREIRVDVSTPKPPRDGNRQGRKEAPQSAPTTTL 283
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALEST 120
F+ N E +I+ F YG ++ VR + F +V++ E A KA+E
Sbjct: 284 FLGNLS-FNVTEDEIRESFSQYGQLVSVRFPTDRDTGAFKGFGYVEYGDVETAQKAVEGL 342
Query: 121 DRSKLVDRVISVEYA 135
+ ++ R + ++YA
Sbjct: 343 NGVEIAGRSLRLDYA 357
>gi|322695665|gb|EFY87469.1| transformer-SR ribonucleoprotein [Metarhizium acridum CQMa 102]
Length = 328
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATK 115
P LFV P R E ++ + FE YG+V +I R+ F FV+ T E+A
Sbjct: 73 PGSNLFVTGIHP-RLTEAEVSKMFEKYGDVEKCQIMRDPHSKESRGFGFVKMVTSEQAEA 131
Query: 116 ALESTDRSKLVDRVISVEYA 135
A E ++ R +S+E A
Sbjct: 132 AKEGLQGEQIEGRTLSIEKA 151
>gi|47219493|emb|CAG10857.1| unnamed protein product [Tetraodon nigroviridis]
Length = 629
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 288 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADP---VAEPDPEVMAK---VKVL 341
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AFV FE ++ A +A++ + ++
Sbjct: 342 FVRNLATAVTEEL-LEKTFAQFGKLERVKKLKDYAFVHFEERDAAVRAMDEMNGKEVGGE 400
Query: 129 VISVEYALKDDSERDDR 145
I + A D +R +R
Sbjct: 401 EIEIVLAKPPDKKRKER 417
>gi|322709486|gb|EFZ01062.1| transformer-SR ribonucleoprotein, putative [Metarhizium anisopliae
ARSEF 23]
Length = 348
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATK 115
P LFV P R E ++ + FE YG+V +I R+ F FV+ T E+A
Sbjct: 89 PGSNLFVTGIHP-RLSEAEVSKMFEKYGDVEKCQIMRDPHSKESRGFGFVKMVTSEQAEA 147
Query: 116 ALESTDRSKLVDRVISVEYA 135
A E ++ R +S+E A
Sbjct: 148 AKEGLQGEQIEGRTLSIEKA 167
>gi|301790878|ref|XP_002930446.1| PREDICTED: splicing factor, arginine/serine-rich 9-like [Ailuropoda
melanoleuca]
Length = 253
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR---GERGRHRDGSKSMANQRPTK 66
FAFV FED RDA DAI G + + Y + RL VE+ R G G R G +R
Sbjct: 86 FAFVRFEDPRDAEDAIYGRNG--YDYGQCRLRVEFPRTYGGRAGWPRGGRNGPPTRRSDF 143
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 125
+ V P + + D+K H G+V + ++++ V++ +E+ AL D +K
Sbjct: 144 RVLVSGLPPSGSWQ-DLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 202
>gi|281340832|gb|EFB16416.1| hypothetical protein PANDA_020890 [Ailuropoda melanoleuca]
Length = 215
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR---GERGRHRDGSKSMANQRPTK 66
FAFV FED RDA DAI G + + Y + RL VE+ R G G R G +R
Sbjct: 48 FAFVRFEDPRDAEDAIYGRNG--YDYGQCRLRVEFPRTYGGRAGWPRGGRNGPPTRRSDF 105
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 125
+ V P + + D+K H G+V + ++++ V++ +E+ AL D +K
Sbjct: 106 RVLVSGLPPSGSWQ-DLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 164
>gi|40807189|gb|AAH65323.1| GTPase activating protein (SH3 domain) binding protein 1 [Danio
rerio]
Length = 477
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR-----NFAFVQFETQEEATKALESTDR 122
LFV N P + ++K FE YG VL +RI NF FV F+ E K L +
Sbjct: 345 LFVGNV-PHDVDKNELKEFFEQYGTVLELRINSGGKLPNFGFVVFDDSEPVQKILNNRPI 403
Query: 123 SKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYR----RRPSPDYGR 178
D ++VE + DR D RG G G S P R ++PS GR
Sbjct: 404 KLRGDVRLNVEEKKTRSAREGDRRDIRPRGPGGPRDRIGGSRGPPTRGGMAQKPSFGAGR 463
Query: 179 GRSPAYDRYNGP 190
G P+ RY GP
Sbjct: 464 GTGPSEGRYTGP 475
>gi|164657762|ref|XP_001730007.1| hypothetical protein MGL_2993 [Malassezia globosa CBS 7966]
gi|159103901|gb|EDP42793.1| hypothetical protein MGL_2993 [Malassezia globosa CBS 7966]
Length = 638
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 11/141 (7%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR--PTK 66
GF +V F +A A + R+ ++ ARG + R +K ++R P+
Sbjct: 436 GFGYVDFATSAEALRASKEAHGKELDGRALRVDLQPARGPQDRAESRAKHFKDERSAPSN 495
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR--------NFAFVQFETQEEATKALE 118
TLF+ T E DI F +G V VR+ + F +V+F +Q+ A KALE
Sbjct: 496 TLFIGGLAWALT-EDDIWNAFAEFGEVTGVRLPKEIDSGRPKGFGYVEFVSQDNAAKALE 554
Query: 119 STDRSKLVDRVISVEYALKDD 139
+ + L R I +++A K D
Sbjct: 555 TMNGQALGGRPIRIDFAGKRD 575
>gi|357483947|ref|XP_003612260.1| Scaffold attachment factor B1 [Medicago truncatula]
gi|355513595|gb|AES95218.1| Scaffold attachment factor B1 [Medicago truncatula]
Length = 303
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATKALE 118
TL+V R ERD++ HF G V RI R FAFV +T E+A + ++
Sbjct: 132 TLYVTGLS-SRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDANRCIK 190
Query: 119 STDRSKLVDRVISVE 133
++S L R I+VE
Sbjct: 191 YLNQSILEGRYITVE 205
>gi|308505910|ref|XP_003115138.1| hypothetical protein CRE_28371 [Caenorhabditis remanei]
gi|308259320|gb|EFP03273.1| hypothetical protein CRE_28371 [Caenorhabditis remanei]
Length = 747
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 160 YGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPV------PVYDRR 213
Y P P P YG RSP YD GPVY R P + R P+ P+YD
Sbjct: 565 YDNPPGPINDNPREPVYGNSRSPNYDNPRGPVYGNPRGPINDNPREPIYGNPRGPIYDNP 624
Query: 214 RSPDYGRNRSPNF 226
R P Y +RSPN+
Sbjct: 625 REPIYDNSRSPNY 637
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 140 SERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPD 199
+ R YD+PR YG +P G P P YG R P YD P+YD RSP+
Sbjct: 583 NSRSPNYDNPRGPVYG--NPRG----PINDNPREPIYGNPRGPIYDNPREPIYDNSRSPN 636
Query: 200 HGRHRSPV------PVYDRRRSPDYGRNRSP 224
+ R PV P+YD R P YG R P
Sbjct: 637 YDNPRGPVYGNPRGPMYDNPREPIYGNPRGP 667
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 147 DSPRRGGYG--RHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHR 204
D+PR YG R Y P Y SP+Y R P Y GP+YD R P +G R
Sbjct: 606 DNPREPIYGNPRGPIYDNPREPIYDNSRSPNYDNPRGPVYGNPRGPMYDNPREPIYGNPR 665
Query: 205 SPVPVYDRRRSP 216
P+YD R P
Sbjct: 666 G--PIYDNARQP 675
>gi|395545949|ref|XP_003774858.1| PREDICTED: uncharacterized protein LOC100927808 [Sarcophilus
harrisii]
Length = 442
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 77/188 (40%), Gaps = 53/188 (28%)
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 111
+N P L V + T ERD+++ F YG + HV I R FAFV FE E
Sbjct: 284 SNPDPNCCLGVFGLS-LYTTERDLRQIFTKYGPISHVSIVYDQQSRRSRGFAFVYFENVE 342
Query: 112 EATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRR 171
EA KA E D +L R I V++++ R +P G Y Y R Y R
Sbjct: 343 EAKKAKERVDGIELDGRRIRVDFSITK------RPHTPTPGIYMGRPTYNRRRD--YHER 394
Query: 172 PSPDYGRGRSPAYDR------YNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 225
P Y RG Y+R Y G VY R R+P P Y R
Sbjct: 395 P---YDRG----YERDYYNRSYRGVVY---------RRRTPSPRYSR------------- 425
Query: 226 FGRYRSRS 233
GRY+SRS
Sbjct: 426 -GRYQSRS 432
>gi|340914863|gb|EGS18204.1| hypothetical protein CTHT_0062190 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 344
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATK 115
P LFV P R E +I R FE YG V +I R+ F FV+ T E+A
Sbjct: 70 PGSNLFVTGIHP-RLEESEITRLFEKYGEVEKCQIMRDPHTGESRGFGFVKMMTSEQAEA 128
Query: 116 ALESTDRSKLVDRVISVEYA 135
A+E + R +++E A
Sbjct: 129 AMEGLKGEIIEGRTLNIEKA 148
>gi|389743141|gb|EIM84326.1| hypothetical protein STEHIDRAFT_170049 [Stereum hirsutum FP-91666
SS1]
Length = 779
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 18/164 (10%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRP---- 64
G+ FV F+ A A++G+ + D LSV++A RG D + +
Sbjct: 600 GYGFVGFKTTEGAKKALKGMQG--YVLDGHALSVKFAG--RGVEEDEAAGGEGAKKGGKS 655
Query: 65 -TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKA 116
T + V N P +++I+ F +G + VR+ R FAF++F T++EA A
Sbjct: 656 RTTKMLVKNV-PFEATKKEIRELFGSHGQLKSVRVPKRFDHRTRGFAFLEFVTRQEAENA 714
Query: 117 LESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRG-GYGRHSP 159
+ + L+ R + +E+A + D + ++ G G G+ P
Sbjct: 715 YNALKHTHLLGRHLVLEWAEEGDMDVEELRKKAGVGFGEGKELP 758
>gi|212528134|ref|XP_002144224.1| RNA-binding protein (Nab3), putative [Talaromyces marneffei ATCC
18224]
gi|210073622|gb|EEA27709.1| RNA-binding protein (Nab3), putative [Talaromyces marneffei ATCC
18224]
Length = 862
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 16/152 (10%)
Query: 29 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHF 87
D++ +G + +++ E+ R ER +G + ++ P + LFV N R +RD+ F
Sbjct: 332 DDVFWGDEVQKIYDEFLREERAYVTEG---LWDRFPYGSRLFVGNLPSERVTKRDLFHVF 388
Query: 88 EPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYD 147
YG + + I++ + F+QF E +AL++ S + R I +E + S R
Sbjct: 389 HKYGKLAQISIKQAYGFIQFLDSEPCHRALQAEQGSLIRGRKIHLEISKPQKSTRPGP-- 446
Query: 148 SPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRG 179
H GR P P +R SPDY RG
Sbjct: 447 --------THPEPGRQPFP--KRSRSPDYSRG 468
>gi|367025775|ref|XP_003662172.1| hypothetical protein MYCTH_2314855 [Myceliophthora thermophila ATCC
42464]
gi|347009440|gb|AEO56927.1| hypothetical protein MYCTH_2314855 [Myceliophthora thermophila ATCC
42464]
Length = 324
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 63/149 (42%), Gaps = 20/149 (13%)
Query: 2 CISLHYAGFAFVYFED----DRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSK 57
S+ Y Y +D DRD + + R D G+D RR SV +R + S
Sbjct: 3 TTSMDYEATGERYDDDGPRYDRDRSASPRRDD----GHDSRRRSVSPNGNDRAPIKSDSG 58
Query: 58 SMAN---QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQ 106
+ + P LFV P R E +I R FE YG V +I R+ F FV+
Sbjct: 59 NKEDDGATNPGSNLFVTGIHP-RLEESEITRLFEKYGEVEKCQIMRDPHSGESRGFGFVK 117
Query: 107 FETQEEATKALESTDRSKLVDRVISVEYA 135
T E+A A+E + R +++E A
Sbjct: 118 MVTSEQADAAMEGLRGEVIEGRTLNIEKA 146
>gi|224074996|ref|XP_002304510.1| predicted protein [Populus trichocarpa]
gi|222841942|gb|EEE79489.1| predicted protein [Populus trichocarpa]
Length = 208
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATK 115
P L+V R D++++F G VL + R FAFV ET E+A +
Sbjct: 46 PGNNLYVTGLS-TRVTSSDLEKYFSSEGKVLECHLVTDPRTRESRGFAFVTMETVEDANR 104
Query: 116 ALESTDRSKLVDRVISVEYA 135
++ +RS L RVI+VE A
Sbjct: 105 CVKYLNRSVLEGRVITVEKA 124
>gi|389627542|ref|XP_003711424.1| hypothetical protein MGG_07511 [Magnaporthe oryzae 70-15]
gi|351643756|gb|EHA51617.1| hypothetical protein MGG_07511 [Magnaporthe oryzae 70-15]
Length = 324
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 48/116 (41%), Gaps = 19/116 (16%)
Query: 38 RRLSVEWARGERGRHRDGSKSMANQR----------PTKTLFVINFDPIRTRERDIKRHF 87
RR S A G+R R RD + N P LFV P R E ++ R F
Sbjct: 40 RRRSASPANGDRDRERDRAPPRDNGGGRDGDGDAINPGSNLFVTGIHP-RLTEAEVTRMF 98
Query: 88 EPYGNVL--------HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
E YG V H R R F FV+ T ++A A E +L R +S+E A
Sbjct: 99 EKYGEVEKCQIMRDPHTRESRGFGFVKMVTSDQADAAKEGLQGEELEGRTLSIEKA 154
>gi|407262482|ref|XP_003946424.1| PREDICTED: periphilin-1-like [Mus musculus]
Length = 588
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 147 DSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSP 206
D P + R S Y R SP Y R S Y R RSP Y R P Y + RSP + R RS
Sbjct: 262 DRPPQYARDRSSQYARDRSPQYARDRSSHYARDRSPHYARDRSPHYARDRSPQYARDRS- 320
Query: 207 VPVYDRRRSPDYGRNRSPNFGRYRS 231
Y R RSP Y R+RS + R RS
Sbjct: 321 -SHYARDRSPQYARDRSSQYARDRS 344
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 150 RRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPV 209
RR + H P RS Y R SP Y R RSP Y R P Y + RS + R RS P
Sbjct: 227 RRKTFSSHHPRDRSSH--YARDRSPHYARDRSPHYARDRPPQYARDRSSQYARDRS--PQ 282
Query: 210 YDRRRSPDYGRNRSPNFGRYRS 231
Y R RS Y R+RSP++ R RS
Sbjct: 283 YARDRSSHYARDRSPHYARDRS 304
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 141 ERDDRYDSPRRGGYGRHSP--YGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSP 198
+R Y R Y R P Y R S Y R SP Y R RS Y R P Y + RSP
Sbjct: 246 DRSPHYARDRSPHYARDRPPQYARDRSSQYARDRSPQYARDRSSHYARDRSPHYARDRSP 305
Query: 199 DHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRS 231
+ R RSP Y R RS Y R+RSP + R RS
Sbjct: 306 HYARDRSPQ--YARDRSSHYARDRSPQYARDRS 336
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 160 YGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYG 219
Y R SP Y R SP Y R RS Y R P Y + RS + R RS Y R RS Y
Sbjct: 299 YARDRSPHYARDRSPQYARDRSSHYARDRSPQYARDRSSQYARDRS--SHYARDRSSHYA 356
Query: 220 RNRSPN 225
R+RSP+
Sbjct: 357 RDRSPH 362
>gi|123494973|ref|XP_001326638.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121909555|gb|EAY14415.1| hypothetical protein TVAG_256070 [Trichomonas vaginalis G3]
Length = 405
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 10/112 (8%)
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-----RRNF---AFVQFETQEEATKAL 117
+T+++ N P T E ++K FE YG ++ ++ R F FV ET+E+A KA+
Sbjct: 9 RTVYIGNL-PFSTSELEVKTLFEVYGKIIKMKTLNQTNSRQFHGVMFVVMETKEQADKAV 67
Query: 118 ESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHS-PYGRSPSPAY 168
E +++ +R + V A++ E+D + D P R PYGR P Y
Sbjct: 68 EGLNQTIFGNRKLKVSIAVRKAPEKDFKDDRPPFDSKPRPPRPYGRDSRPDY 119
>gi|294944087|ref|XP_002784080.1| RNA-binding domain protein, putative [Perkinsus marinus ATCC 50983]
gi|239897114|gb|EER15876.1| RNA-binding domain protein, putative [Perkinsus marinus ATCC 50983]
Length = 849
Score = 47.4 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 16/146 (10%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSK------SMANQ 62
GF FV F++ + A + I+ L D R L ++ RG + SK + A+
Sbjct: 671 GFGFVEFKNHKAAKECIKRLQGSSL--DGRTLELQIGRGGKAGGGSQSKIGQAGVTKADT 728
Query: 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEAT 114
+ + RDI++ F YGNV+ VR+ R FAFV+F ++ EA
Sbjct: 729 KGATNRLCVRNVAFEASRRDIRKLFSTYGNVVAVRMPLKVDRSGHRGFAFVEFVSRSEAL 788
Query: 115 KALESTDRSKLVDRVISVEYALKDDS 140
A+E+ + L R + +E A +D+
Sbjct: 789 AAMEALQHTHLYGRRLVLEPAAHEDT 814
>gi|356566197|ref|XP_003551321.1| PREDICTED: uncharacterized protein LOC100808038 [Glycine max]
Length = 364
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 75/180 (41%), Gaps = 48/180 (26%)
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEA 113
+ P L+V P R +R++++HF G V+ V + R F FV ET EEA
Sbjct: 46 ENPGNNLYVTGLSP-RITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMETLEEA 104
Query: 114 TKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAY----- 168
+ ++ +RS L RVI+VE A + RRG R+P+P
Sbjct: 105 ERCVKYLNRSVLEGRVITVEKAKR------------RRG---------RTPTPGRYLGLR 143
Query: 169 ---RRRPSPDYGRGRSPAYDRYNGPVYDQRRSPD----------HGRHRSPVPVYDRRRS 215
RR SP Y RSP+Y + S D + R RS P + RRRS
Sbjct: 144 TIRARRRSPSYSPRRSPSYSPFRRSYSRSPYSSDRSRSRSYSPDYQRRRSYSPYHSRRRS 203
>gi|296815176|ref|XP_002847925.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
gi|238840950|gb|EEQ30612.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
Length = 903
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 24/129 (18%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LF+ N R +RD+ F +G + + I++ + F+QF + KALE+ + L
Sbjct: 428 LFIGNLPTERVTKRDLFHIFHMHGKLAQISIKQAYGFIQFLEPDSCRKALEAQQGATLRG 487
Query: 128 RVISVEYALKDDSERDDRYDSPRRG--GYGRHSPYGRSPSPAYRRRPSPDYGRGRSP--- 182
R I +E + P+RG G P GR+ RR SP+Y R R P
Sbjct: 488 RKIHLEIS------------KPQRGPRNSGPTEPSGRN----QRRSRSPEYERNREPLRG 531
Query: 183 ---AYDRYN 188
A DRY+
Sbjct: 532 GRSAADRYD 540
>gi|223649064|gb|ACN11290.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 631
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA D MA K L
Sbjct: 292 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPD---VMAK---VKVL 345
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV I E +++ F +G + V+ +++AFV FE ++ A KA+ + +L
Sbjct: 346 FVRKL-AIPVTEELLEKTFSAFGKLERVKKLKDYAFVHFEDRDAAVKAMAEMNGKELGGE 404
Query: 129 VISVEYALKDDSERDDR 145
I + A D +R +R
Sbjct: 405 GIEIVLAKPPDKKRKER 421
>gi|378755700|gb|EHY65726.1| hypothetical protein NERG_01333 [Nematocida sp. 1 ERTm2]
Length = 316
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 81/180 (45%), Gaps = 26/180 (14%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR-GERGRHRDGSKSMANQRPTKT 67
GF +V FE ++A + R L+ Y+ R + V+ AR G++G + N+ T
Sbjct: 133 GFGYVEFES-KEACEKSRSLNGTD--YNGRTIVVDMARSGQKGGAAGTEGRVFNKTDDNT 189
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALES 119
+F+ N P D+ H + Y V +RI + FAF ET EEA K + S
Sbjct: 190 VFLGNI-PFDVDHDDLLAHLKTYAEVTQIRIPEDRETGRPKGFAFASCETTEEARKLINS 248
Query: 120 TDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRG 179
+DR I + SER + +S RGG + +GR + ++ RR + D G
Sbjct: 249 --NITYMDRAIRAQ-----PSER--KNNSAPRGG----NSFGRRDNNSFGRRDNSDRSSG 295
>gi|358387674|gb|EHK25268.1| hypothetical protein TRIVIDRAFT_72404 [Trichoderma virens Gv29-8]
Length = 841
Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA-RG----ERGRHRDGSKSMANQR 63
GF FV F A A++ +D + D L V+ + RG E R D +K A QR
Sbjct: 659 GFGFVEFRSKSQAQAALKTMDG--YVLDGHALGVKASHRGHDAAEERRREDAAKKAAAQR 716
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKA 116
T VI P + ++DI+ F YG + VR+ R FAF F T EA A
Sbjct: 717 ---TKIVIKNLPFQATKKDIRTLFGTYGQLRSVRVPKKADYTARGFAFADFVTPREAENA 773
Query: 117 LESTDRSKLVDRVISVEY 134
L + + L+ R + +++
Sbjct: 774 LNALKDTHLLGRRLVLDF 791
>gi|294460169|gb|ADE75667.1| unknown [Picea sitchensis]
Length = 216
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 76/177 (42%), Gaps = 36/177 (20%)
Query: 53 RDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAF 104
RD S P L+V R E D++ F G V+ RI R F F
Sbjct: 50 RDISSRNDVSNPGNNLYVTGLS-ARVVEADLEELFSQEGKVVDCRIVVDPRSRESRGFGF 108
Query: 105 VQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGY------GRHS 158
V +T E A + ++ +RS L R+I+VE A + R +P G Y R
Sbjct: 109 VTMDTLENADRCVKYLNRSTLEGRIITVEKAKR------KRARTPTPGSYLGVRATVRPR 162
Query: 159 PYGRSPSPAYRRRP--SP-------DYGRGRSPAYDRYNGPVY--DQRRSPDHGRHR 204
YGR + RR P SP DY R RSP Y+GP Y ++ RSP++ +R
Sbjct: 163 SYGRHRDGSSRRSPQYSPYRGSRERDYDRDRSP----YSGPSYRRERSRSPEYSPYR 215
>gi|196004628|ref|XP_002112181.1| hypothetical protein TRIADDRAFT_23659 [Trichoplax adhaerens]
gi|190586080|gb|EDV26148.1| hypothetical protein TRIADDRAFT_23659 [Trichoplax adhaerens]
Length = 266
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 18/138 (13%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN------- 61
GF FV F+D RDA DAI L+N + R+ VE+A+G R R G+ +
Sbjct: 36 GFGFVEFDDPRDAEDAIYELNNRDLMGE--RVIVEFAKGTRYDDRRGAYPLITPSYLLFR 93
Query: 62 -----QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL----HVRIRRNFAFVQFETQEE 112
R T+ VIN R RDIK + G+V H ++ V F T ++
Sbjct: 94 PRFGRPRNTEWRLVINNLSSRATWRDIKDYMRQAGDVTFADAHKQLGEGRGVVDFATYDD 153
Query: 113 ATKALESTDRSKLVDRVI 130
AL+ D ++L R +
Sbjct: 154 MKDALKRLDGTELCGRKV 171
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKAL-ESTDRSKLVDRVISVEYA 135
R RERD++ F +G + V ++ F FV+F+ +A A+ E +R + +RVI VE+A
Sbjct: 12 RARERDVEHFFRGFGKIREVTLKNGFGFVEFDDPRDAEDAIYELNNRDLMGERVI-VEFA 70
Query: 136 LKDDSERDDRYDSPRRGGYGRHSP 159
+ RYD RRG Y +P
Sbjct: 71 ------KGTRYDD-RRGAYPLITP 87
>gi|449455042|ref|XP_004145262.1| PREDICTED: uncharacterized protein LOC101211183 [Cucumis sativus]
gi|449470652|ref|XP_004153030.1| PREDICTED: uncharacterized protein LOC101208036 [Cucumis sativus]
gi|449474935|ref|XP_004154325.1| PREDICTED: uncharacterized protein LOC101221508 [Cucumis sativus]
Length = 367
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEA 113
+ P L+V P TR R++++HF G VL V + R F F+ + +EA
Sbjct: 38 ENPGNNLYVTGLSPRITR-RELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEA 96
Query: 114 TKALESTDRSKLVDRVISVEYA 135
++ +RS L R+I+VE A
Sbjct: 97 ENCIKYLNRSVLEGRIITVEKA 118
>gi|410910852|ref|XP_003968904.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Takifugu
rubripes]
Length = 238
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N +R D++R F YG ++ V I R FA++QFE +A
Sbjct: 8 PNTSLFVRNISD-ESRPEDLRREFGRYGPIVDVYIPLDFYTRQPRGFAYIQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL S DR + R I +++A D
Sbjct: 67 ALHSLDRKWVCGRQIEIQFAQGD 89
>gi|405974565|gb|EKC39200.1| RNA-binding protein 4 [Crassostrea gigas]
Length = 226
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 20/142 (14%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
+ L++ N P R+ D+++ FE YG V+ I RN+ F+ FE EA A + D
Sbjct: 6 STKLYIGNL-PETCRKADLQKMFEAYGKVIECDIVRNYCFIHFENPNEAKMAQANLDGVD 64
Query: 125 LVDRVISVEYALKDDSE------RDDRYDSPRRGGYGRHSPYG------RSPSPAYR--- 169
+ VE + + + + Y + G + + P G R P P YR
Sbjct: 65 FEGVKLKVEMSHSKVRQKPGMGGKGECYRCGKEGHWSKDCPKGPSRGKPRGPEPPYRDPY 124
Query: 170 RRPSPDYGRGR----SPAYDRY 187
R P Y R R P +DRY
Sbjct: 125 RDPYDPYYRDRYLPPPPPHDRY 146
>gi|343427687|emb|CBQ71214.1| related to Transformer-2 protein homolog [Sporisorium reilianum
SRZ2]
Length = 341
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Query: 45 ARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HV 96
AR H + + P L V T +RD++ F YG + H
Sbjct: 52 ARAGEDNHARADRDNGDSNPGNNLHVSGLS-KGTTDRDLEEAFGKYGPIQKAQVMYDPHS 110
Query: 97 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
R R FAFV FE E+A A+ + + ++ + R I+VE A
Sbjct: 111 REPRGFAFVTFEKAEDAEAAITAMNNTEFLGRKITVEKA 149
>gi|255936927|ref|XP_002559490.1| Pc13g10700 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584110|emb|CAP92139.1| Pc13g10700 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 301
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 104/246 (42%), Gaps = 51/246 (20%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFG--YDRRRLSVEWARGERGRHRDGSKSMANQ--RP 64
GF F+ ++D DA D + P G + RL+V++ARG R + S N RP
Sbjct: 43 GFGFIEYDDQLDARDIV------PDGSEFKGERLTVQFARGPRRKEAFPGPSERNALPRP 96
Query: 65 TKTLFVINFDPI-RTRERDIKRHFEPYG-NVLHVRIRRNFA--FVQFETQEEATKALEST 120
+T+F + + T +D+K G +V++ R FV+FET + A+E
Sbjct: 97 RRTIFRMQISGLPETSWQDLKDFARQSGLDVVYSETGREQGRGFVEFETANDLKTAVEKL 156
Query: 121 DRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAY-----RRRPSPD 175
D+ + V+S ++ ER P R Y SP R P P RR P P
Sbjct: 157 DQREFKGSVVSCVADIQSFEER------PMRDPYRSRSP-PRRPYPVTMDEYDRRIPPP- 208
Query: 176 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRN----RSPNFGRYRS 231
RG SP +H R RSP+P+ RR P Y R+ R+P R
Sbjct: 209 --RGYSPR---------------EHYRERSPIPI---RRDPYYERDGYARRTPPRPRMED 248
Query: 232 RSPVRR 237
P RR
Sbjct: 249 YPPPRR 254
>gi|168051480|ref|XP_001778182.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670395|gb|EDQ56964.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 172
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATK 115
P L+V R E+D++ HF G VL R+ R F FV E E+A +
Sbjct: 11 PGNNLYVTGLS-TRVNEKDLQEHFSREGKVLECRLVLDPRTRESRGFGFVTMEHLEDAER 69
Query: 116 ALESTDRSKLVDRVISVEYA 135
++ +RS L R+I+VE A
Sbjct: 70 CIKYLNRSTLEGRMITVEKA 89
>gi|302690366|ref|XP_003034862.1| hypothetical protein SCHCODRAFT_84382 [Schizophyllum commune H4-8]
gi|300108558|gb|EFI99959.1| hypothetical protein SCHCODRAFT_84382 [Schizophyllum commune H4-8]
Length = 292
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 75 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134
P T D+K+ F YG V+ R+ F F+++E+ ++A A+ + I+VE+
Sbjct: 17 PPDTAPEDVKKTFGAYGTVVDCRVMTGFGFIEYESSKDAEDAVNEMNGKTFNGNSIAVEF 76
Query: 135 ALK-----DDSERDDRYDSPRR--GGY 154
A + + ERD Y +PRR GG+
Sbjct: 77 ARENRPRREPYERDREYGAPRRRPGGF 103
>gi|449303128|gb|EMC99136.1| hypothetical protein BAUCODRAFT_120428 [Baudoinia compniacensis
UAMH 10762]
Length = 822
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 19/142 (13%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR-----GERGRHRDGSKSMANQR 63
GF F+ F + A A++ +D + D RL + + E RH D +K R
Sbjct: 645 GFGFLEFRTAQQAQAALQAMDG--YTLDGHRLQIRASHKGADAAEERRHADAAK-----R 697
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKA 116
TKT +I P ++D++ F +G + VR+ R FAF F T +EA A
Sbjct: 698 GTKTKIIIKNLPFEATKKDVRALFGAFGQLRSVRVPKKMDRAARGFAFADFTTPKEAESA 757
Query: 117 LESTDRSKLVDRVISVEYALKD 138
+E+ + L+ R + +++A D
Sbjct: 758 MEALRNTHLLGRRLVLDFAEGD 779
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 12/108 (11%)
Query: 48 ERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------- 99
E R D + + R + LFV N P + D++ FEP+GN+ V +
Sbjct: 282 ETTRILDSASDVDAVRSSMRLFVRNL-PYSATKEDLEAEFEPFGNLAAVHVSMSKKTGSA 340
Query: 100 RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYD 147
+ FAF+Q+ + A +AL D R++ + L ++R+D+ D
Sbjct: 341 KGFAFIQYSDADAAERALREKDGQTFQGRLLHI---LPGKAKREDKLD 385
>gi|255636876|gb|ACU18771.1| unknown [Glycine max]
Length = 246
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATKALE 118
TL+V R ERD++ HF G V RI R FAF+ +T E+A + ++
Sbjct: 70 TLYVTGLS-SRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFITMDTVEDANRCIK 128
Query: 119 STDRSKLVDRVISVE 133
++S L R I+VE
Sbjct: 129 YLNQSVLEGRYITVE 143
>gi|348525775|ref|XP_003450397.1| PREDICTED: RNA-binding protein 4B-like [Oreochromis niloticus]
Length = 338
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 17/124 (13%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
FAFV+ +D + A AI+ L + ++VE + G+ NQ K L
Sbjct: 37 FAFVHMDDRKAATKAIKNLH--LYKLHGTPINVEASHGK------------NQGSVK-LH 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N + + + +++ FE YG V + +NFAFV +EA A++ D ++ +
Sbjct: 82 VANVE--KGSDDELRALFEEYGTVTECAVVKNFAFVHMSNSDEAMDAIKGLDNTEFQGKR 139
Query: 130 ISVE 133
I V+
Sbjct: 140 IHVQ 143
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+FV N P T E +IK F YG V I +NFAFV + ++ ATKA+++ KL
Sbjct: 4 IFVGNL-PRATNEDEIKALFTEYGTVTECAIIKNFAFVHMDDRKAATKAIKNLHLYKLHG 62
Query: 128 RVISVE 133
I+VE
Sbjct: 63 TPINVE 68
>gi|62733051|gb|AAX95168.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative
[Oryza sativa Japonica Group]
gi|77549578|gb|ABA92375.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|222615796|gb|EEE51928.1| hypothetical protein OsJ_33542 [Oryza sativa Japonica Group]
Length = 465
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 13/134 (9%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF FV + + A A + L F D +L+V WA + S S + KT+
Sbjct: 228 GFLFVEYYNHACADYARQKLSAPNFKVDGSQLTVSWA-----EPKGSSDSSSAAAQVKTI 282
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTD 121
+V N ++E+ IK FE +G V V + +R+F FV F + A KA++ ++
Sbjct: 283 YVKNLPENASKEK-IKEIFEKHGEVTKVVLPPAKDGHKRDFGFVHFAERSSALKAVKGSE 341
Query: 122 RSKLVDRVISVEYA 135
+ + +V+ V A
Sbjct: 342 KYEFNGQVLEVSMA 355
>gi|170106173|ref|XP_001884298.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164640644|gb|EDR04908.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 212
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---------RRNFAFVQFETQEEAT 114
P+ L V IRT+ERD+ F +G V V I R F F++ T E+AT
Sbjct: 6 PSNVLGVFGL-SIRTQERDLDEEFSRFGRVEKVTIVYDQRQSDRSRGFGFIKMATVEDAT 64
Query: 115 KALESTDRSKLVDRVISVEYALKD 138
+ ++ + L R I V+Y++ D
Sbjct: 65 RCIQELNGVDLNGRRIRVDYSVTD 88
>gi|1781299|emb|CAA70700.1| transformer-SR ribonucleoprotein [Nicotiana tabacum]
Length = 235
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATK 115
P TL+V R ERD++ HF G V V RI R FAF+ ++ E+A +
Sbjct: 64 PGNTLYVTGLS-TRVTERDLEEHFSKEGKVKSVFLVVEPRSRISRGFAFITMDSLEDANR 122
Query: 116 ALESTDRSKLVDRVISVE 133
++ ++S L R I+VE
Sbjct: 123 CIKHLNQSVLEGRYITVE 140
>gi|390600853|gb|EIN10247.1| RNA-binding domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 329
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 76 IRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVD 127
IRT+ERD+ F +G V V I R F F++ T E+ATKA+E+ + L
Sbjct: 84 IRTQERDLDDEFSRFGQVEKVTIVYDQRSGRSRGFGFIKMATVEDATKAIENLNGVDLNG 143
Query: 128 RVISVEYALKD 138
R I V+Y++ +
Sbjct: 144 RRIRVDYSVTE 154
>gi|123455020|ref|XP_001315258.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121897929|gb|EAY03035.1| hypothetical protein TVAG_143350 [Trichomonas vaginalis G3]
Length = 156
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKAL 117
TK + T E +K FE YGN+ VRI RN F FV+FE +E+A KA
Sbjct: 24 TKCTVYVGSLSWSTNEDGLKAVFEKYGNITSVRIPRNDRDQSKGFGFVEFENEEDAKKAC 83
Query: 118 ESTDRSKLVDRVISV 132
E D ++L R + V
Sbjct: 84 E-MDGTELEGRALKV 97
>gi|68070817|ref|XP_677322.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56497394|emb|CAH96506.1| conserved hypothetical protein [Plasmodium berghei]
Length = 224
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 75/178 (42%), Gaps = 49/178 (27%)
Query: 67 TLFVINFDP--IRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKA 116
TL+V N T+ +DI FE YG + + RNF FV F + +A A
Sbjct: 3 TLYVSNLSSKITTTKLQDI---FEKYGTIEKCYVISNPITKESRNFGFVTFNSSADAENA 59
Query: 117 LESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYG-----------RHSPYGRSPS 165
+ ++ + RVI+VE A +++ P G Y RH YGR
Sbjct: 60 MNKANKMDIEGRVINVEIAKRNEPH------EPTPGEYKGVQNMMKRYPMRHDYYGRRYD 113
Query: 166 PAY------RRRPSP---DYGRG----RSP--AYDRYNGPVYDQ----RRSPDHGRHR 204
P + RRP+P DYG+G +P YD+Y YD RRS D+ H+
Sbjct: 114 PHFDRRKYDSRRPNPYNRDYGKGYGYRNTPFRQYDKYARNSYDHRHYDRRSIDNKYHK 171
>gi|148708748|gb|EDL40695.1| mCG51743 [Mus musculus]
Length = 527
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 147 DSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSP 206
D P + R S Y R SP Y R S Y R RSP Y R P Y + RSP + R RS
Sbjct: 201 DRPPQYARDRSSQYARDRSPQYARDRSSHYARDRSPHYARDRSPHYARDRSPQYARDRS- 259
Query: 207 VPVYDRRRSPDYGRNRSPNFGRYRS 231
Y R RSP Y R+RS + R RS
Sbjct: 260 -SHYARDRSPQYARDRSSQYARDRS 283
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 150 RRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPV 209
RR + H P RS Y R SP Y R RSP Y R P Y + RS + R RS P
Sbjct: 166 RRKTFSSHHPRDRSSH--YARDRSPHYARDRSPHYARDRPPQYARDRSSQYARDRS--PQ 221
Query: 210 YDRRRSPDYGRNRSPNFGRYRS 231
Y R RS Y R+RSP++ R RS
Sbjct: 222 YARDRSSHYARDRSPHYARDRS 243
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 141 ERDDRYDSPRRGGYGRHSP--YGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSP 198
+R Y R Y R P Y R S Y R SP Y R RS Y R P Y + RSP
Sbjct: 185 DRSPHYARDRSPHYARDRPPQYARDRSSQYARDRSPQYARDRSSHYARDRSPHYARDRSP 244
Query: 199 DHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRS 231
+ R RSP Y R RS Y R+RSP + R RS
Sbjct: 245 HYARDRSPQ--YARDRSSHYARDRSPQYARDRS 275
Score = 36.6 bits (83), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 160 YGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYG 219
Y R SP Y R SP Y R RS Y R P Y + RS + R RS Y R RS Y
Sbjct: 238 YARDRSPHYARDRSPQYARDRSSHYARDRSPQYARDRSSQYARDRS--SHYARDRSSHYA 295
Query: 220 RNRSPN 225
R+RSP+
Sbjct: 296 RDRSPH 301
>gi|449435631|ref|XP_004135598.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Cucumis sativus]
Length = 315
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 75/180 (41%), Gaps = 26/180 (14%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+AFV FED RDA DAI G D F D RL VE+A G RG + +
Sbjct: 46 GYAFVEFEDVRDAEDAIYGRDGYKF--DGCRLRVEFAHGGRGHSSSVDRYSRSGSSRDFA 103
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSK 124
++ P +D+K H G+V + R+ V + ++ A+ D S+
Sbjct: 104 VLVTGLPSSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSE 163
Query: 125 LVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGR--GRSP 182
+ +K+ YDS RHS Y RSPS RR DY R RSP
Sbjct: 164 FRNAFSRAYVRVKE-------YDS-------RHS-YSRSPSLDSRR---SDYSRSPSRSP 205
>gi|213513443|ref|NP_001133450.1| FUS-interacting serine-arginine-rich protein 1 [Salmo salar]
gi|209154048|gb|ACI33256.1| FUS-interacting serine-arginine-rich protein 1 [Salmo salar]
Length = 271
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATK 115
P +LF+ N +R D++R F YG V+ V I R FA++QFE +A
Sbjct: 8 PNTSLFIRNISD-ESRPEDLRREFGRYGPVVDVYIPLDFYSRRPRGFAYIQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWVCGRQIEIQFAQGD 89
>gi|348519627|ref|XP_003447331.1| PREDICTED: serine/arginine-rich splicing factor 10-like
[Oreochromis niloticus]
Length = 240
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATK 115
P +LFV N +R D++R F YG ++ V I R FA++QFE +A
Sbjct: 8 PNTSLFVRNISD-ESRPEDLRREFGRYGPIVDVYIPLDFYTRQPRGFAYIQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL S DR + R I +++A D
Sbjct: 67 ALHSLDRKWVCGRQIEIQFAQGD 89
>gi|300122234|emb|CBK22807.2| unnamed protein product [Blastocystis hominis]
Length = 187
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRN---FAFVQFETQEEATKALESTDRSKLVDRVISVE 133
R + D+++ FE +G V +V I RN FAFV F T EEA KA+ + ++ D +SVE
Sbjct: 23 RLEKEDLRQAFEQFGTVTNVWIARNPPGFAFVTFSTPEEAEKAIREGNNMEIRDDRVSVE 82
Query: 134 YA 135
A
Sbjct: 83 LA 84
>gi|198438407|ref|XP_002126373.1| PREDICTED: similar to FUS interacting protein (serine-arginine
rich) 1 [Ciona intestinalis]
Length = 221
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 59 MANQRPTKTLFVINF-DPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFET 109
M+ RP +LFV N D IR D++R F +G V V I R FA++QFE
Sbjct: 1 MSRARPNASLFVRNIADNIRPD--DLRREFVRFGPVSDVYIPLDYYNRRPRGFAYIQFED 58
Query: 110 QEEATKALESTDRSKLVDRVISVEYALKD 138
+A AL + DR + R I V++A D
Sbjct: 59 TRDAEDALYAMDRKWICGRYIEVQFAAGD 87
>gi|147899629|ref|NP_001079656.1| serine/arginine-rich splicing factor 10 [Xenopus laevis]
gi|28302303|gb|AAH46695.1| MGC53149 protein [Xenopus laevis]
Length = 258
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 11/84 (13%)
Query: 64 PTKTLFVINF-DPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEAT 114
P +LFV N D IR+ D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNSSLFVRNIADDIRSE--DLRREFGRYGPIVDVYVPLDYYNRRPRGFAYVQFEDVRDAE 65
Query: 115 KALESTDRSKLVDRVISVEYALKD 138
AL + D+ + R I +++A D
Sbjct: 66 DALHNLDKKWICGRQIEIQFAQGD 89
>gi|125533975|gb|EAY80523.1| hypothetical protein OsI_35702 [Oryza sativa Indica Group]
Length = 468
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 13/134 (9%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF FV + + A A + L F D +L+V WA + S S + KT+
Sbjct: 231 GFLFVEYYNHACADYARQKLSAPNFKVDGSQLTVSWA-----EPKGSSDSSSAAAQVKTI 285
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTD 121
+V N ++E+ IK FE +G V V + +R+F FV F + A KA++ ++
Sbjct: 286 YVKNLPENASKEK-IKEIFEKHGEVTKVVLPPAKDGHKRDFGFVHFAERSSALKAVKGSE 344
Query: 122 RSKLVDRVISVEYA 135
+ + +V+ V A
Sbjct: 345 KYEFDGQVLEVSMA 358
>gi|149242977|ref|XP_001526491.1| hypothetical protein LELG_03049 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450614|gb|EDK44870.1| hypothetical protein LELG_03049 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 356
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 96/215 (44%), Gaps = 33/215 (15%)
Query: 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPT 65
GF++V +++ + ++ G R+L ++ A+ GR K+ + P+
Sbjct: 109 QIKGFSYVDVKNEEQVTSLVELSESFLNG---RKLLIKNAKSFEGRP---EKTESKLPPS 162
Query: 66 KTLFVIN--FDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
+ LFV N FD T E +++ HF G++ +R+ + FAF+ F+ +E A
Sbjct: 163 RILFVGNLGFD---TTEDNLEEHFRHCGDIARIRMATFQDTGKCKGFAFIDFKKEEGAVA 219
Query: 116 ALESTDRSKLVDRVISVEYALKDDSERDDRYDSPR----RGGYGRHSPYG-----RSPSP 166
A+ S +++R + +EY +R + + R GG G + G R P
Sbjct: 220 AMNSKLTKMMLNRKLRLEYGEDRSKKRPKSHTNGRPSEFTGGEGEEAARGDLLAPRISKP 279
Query: 167 AYRRRPS---PDYG--RGRSPAYDRYNGPVYDQRR 196
YR R D G RG+ +Y+ + YD+R+
Sbjct: 280 QYRERGQDRGQDRGQDRGQDRSYENQHERSYDRRQ 314
>gi|410342937|gb|JAA40415.1| transformer 2 beta homolog [Pan troglodytes]
Length = 288
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 111
AN P L V + T ERD++ HF YG + V I R FAFV FE +
Sbjct: 112 ANPDPNCCLGVFGLS-LYTTERDLREHFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVD 170
Query: 112 EATKALESTDRSKLVDRVISVEYAL 136
+A +A E + +L R I V++++
Sbjct: 171 DAKEAKERANGMELDGRRIRVDFSI 195
>gi|255646543|gb|ACU23746.1| unknown [Glycine max]
Length = 310
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 15/130 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR---------HRDGSKSM 59
G+AFV FED +DA DAIRG D + +D RL VE A G RG H +G
Sbjct: 46 GYAFVEFEDAQDAEDAIRGRDG--YDFDGHRLRVEPAHGGRGHSSSKDRHNSHSNGRGGR 103
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATK 115
R ++ ++ P +D+K H G+V ++ R V + ++
Sbjct: 104 GVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKY 163
Query: 116 ALESTDRSKL 125
A++ D S+
Sbjct: 164 AIKKLDDSEF 173
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR-----NFAFVQFETQEEATK 115
++R ++T++V N P RER+++ F YG++ H+ ++ +AFV+FE ++A
Sbjct: 2 SRRSSRTVYVGNL-PGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAED 60
Query: 116 ALESTD 121
A+ D
Sbjct: 61 AIRGRD 66
>gi|156377784|ref|XP_001630826.1| predicted protein [Nematostella vectensis]
gi|156217854|gb|EDO38763.1| predicted protein [Nematostella vectensis]
Length = 587
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 10/129 (7%)
Query: 9 GFAFVYFEDDRDAADAIRGLDN--IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK 66
GFAF+ +E + A+ A R L + I + ++V+WA + D K + K
Sbjct: 277 GFAFLEYESHQAASLARRRLASGRIKV-WGNIVVTVDWADPQEEPDDDAMKKV------K 329
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+++ N P T E+ +K + YG V V+ +++AFV F ++ A KA+E TD ++
Sbjct: 330 VVYLRNLSPSITEEK-LKEEYSQYGAVDRVKKLKDYAFVHFTERDHALKAIEETDGKEMD 388
Query: 127 DRVISVEYA 135
I A
Sbjct: 389 GLKIEASLA 397
>gi|452822795|gb|EME29811.1| splicing factor, arginine/serine-rich 2 [Galdieria sulphuraria]
Length = 211
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKA 116
T +L V+N RT D+ F+ YG V+ I RN FAFV+F +E+A KA
Sbjct: 26 TYSLLVLNI-SFRTTPNDLTPLFDKYGEVVDCYIPRNRRNGHSRGFAFVRFRKEEDARKA 84
Query: 117 LESTDRSKLVDRVISVEYA 135
+E D ++ R I+V++A
Sbjct: 85 MEEMDGREVDGRSITVQFA 103
>gi|356572736|ref|XP_003554522.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Glycine max]
Length = 309
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 15/130 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR---------HRDGSKSM 59
G+AFV FED +DA DAIRG D + +D RL VE A G RG H +G
Sbjct: 46 GYAFVEFEDAQDAEDAIRGRDG--YDFDGHRLRVEPAHGGRGHSSSKDRHNSHSNGRGGR 103
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATK 115
R ++ ++ P +D+K H G+V ++ R V + ++
Sbjct: 104 GVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKY 163
Query: 116 ALESTDRSKL 125
A++ D S+
Sbjct: 164 AIKKLDDSEF 173
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR-----NFAFVQFETQEEATK 115
++R ++T++V N P RER+++ F YG++ H+ ++ +AFV+FE ++A
Sbjct: 2 SRRSSRTVYVGNL-PGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAED 60
Query: 116 ALESTD 121
A+ D
Sbjct: 61 AIRGRD 66
>gi|68037673|gb|AAY84884.1| alternative splicing regulator [Triticum aestivum]
Length = 284
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 55/132 (41%), Gaps = 21/132 (15%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN------- 61
GFAFV FED RDA DAI G D + +D RL VE A G R S S+ N
Sbjct: 46 GFAFVEFEDPRDAEDAIHGRDG--YNFDGNRLRVELAHGGRA----NSSSLPNSYGGGGR 99
Query: 62 ----QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEA 113
R T+ ++ P +D+K H G+V + R V + ++
Sbjct: 100 RGGVSRHTEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSEVYREGGGTIGIVDYTNYDDM 159
Query: 114 TKALESTDRSKL 125
A+ D ++
Sbjct: 160 KYAIRKLDDTEF 171
>gi|342879144|gb|EGU80408.1| hypothetical protein FOXB_09084 [Fusarium oxysporum Fo5176]
Length = 345
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATK 115
P LFV P + E ++ + FE YG+V H + R F FV+ T E+A
Sbjct: 72 PGSNLFVTGIHP-KLSEAEVSKMFEKYGDVEKCQIMRDPHTKESRGFGFVKMVTSEQAEA 130
Query: 116 ALESTDRSKLVDRVISVEYA 135
A E ++ R +S+E A
Sbjct: 131 AKEGLQGEQIEGRTLSIEKA 150
>gi|326433655|gb|EGD79225.1| splicing factor [Salpingoeca sp. ATCC 50818]
Length = 255
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
+AFV FED RDA DA+R D FG RL VE+A G GR G+++ Q L
Sbjct: 39 YAFVSFEDSRDAEDAVRRRDGYEFGGG--RLRVEFANG--GRRERGARAFNGQHSEFRLR 94
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 125
V N P +D+K G VL + + V+F +++ AL + + KL
Sbjct: 95 VSNL-PRTASWQDVKDFCREAGEVLFAEVFHDGTGLVEFRREDDMEWALRNLNERKL 150
>gi|351726252|ref|NP_001237888.1| uncharacterized protein LOC100500170 [Glycine max]
gi|255629542|gb|ACU15118.1| unknown [Glycine max]
Length = 238
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATK 115
P TL+V R ERD++ HF G V RI R FAFV E+ E+A +
Sbjct: 69 PGDTLYVTGLSS-RVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMESAEDAER 127
Query: 116 ALESTDRSKLVDRVISVE 133
++ ++S L R I++E
Sbjct: 128 CIKYLNQSVLEGRYITIE 145
>gi|449510738|ref|XP_004163746.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC101230062 [Cucumis sativus]
Length = 369
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEA 113
+ P L+V P TR R++++HF G VL V + R F F+ + +EA
Sbjct: 38 ENPGNNLYVTGLSPRITR-RELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEA 96
Query: 114 TKALESTDRSKLVDRVISVE 133
++ +RS L R+I+VE
Sbjct: 97 ENCIKYLNRSVLEGRIITVE 116
>gi|170045710|ref|XP_001850441.1| arginine/serine-rich splicing factor [Culex quinquefasciatus]
gi|167868651|gb|EDS32034.1| arginine/serine-rich splicing factor [Culex quinquefasciatus]
Length = 241
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 33/189 (17%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN-------- 61
FAFV FED+RDA DA++ D + YD RL VE+ RG GS+ +
Sbjct: 47 FAFVEFEDNRDADDAVKARDG--YDYDGYRLRVEFPRGGGPGSYRGSRGSTSGDRGGGSS 104
Query: 62 ------------QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFE 108
R ++ V+ P +D+K H G+V + ++ V++
Sbjct: 105 GRDRGGNNRGPPARRSQFRVVVTGLPASGSWQDLKDHMREAGDVCFADVYKDGTGVVEYL 164
Query: 109 TQEEATKALESTDRSKLVDRVISVEYA-LKDDSERDDRYDSPRRGGYGRHSPYGRSPSPA 167
E+ A++ D S+ V Y +++DS DD RRGG G H SP
Sbjct: 165 RHEDMKYAIKKLDDSRFRSHEGEVAYIRVREDSGNDD-----RRGG-GEHRDRSYSPR-- 216
Query: 168 YRRRPSPDY 176
RRR +P Y
Sbjct: 217 -RRRGTPTY 224
>gi|209155162|gb|ACI33813.1| Splicing factor, arginine/serine-rich 5 [Salmo salar]
Length = 316
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+FV +P RE+D++R F+ YG + + ++R F FV+F+ +A A+ D +L +
Sbjct: 6 IFVGRLNP-SAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDAEDAVYELDGKELCN 64
Query: 128 RVISVEYA 135
+++E+A
Sbjct: 65 ERVTIEHA 72
>gi|73950230|ref|XP_866516.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Canis lupus familiaris]
gi|297282473|ref|XP_002802272.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 4
[Macaca mulatta]
gi|332244976|ref|XP_003271639.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Nomascus leucogenys]
gi|332807935|ref|XP_003307913.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3 [Pan
troglodytes]
gi|402853340|ref|XP_003891354.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Papio anubis]
Length = 473
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 130 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 183
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 184 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 235
>gi|338722117|ref|XP_003364487.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Equus caballus]
Length = 473
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 130 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 183
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 184 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 235
>gi|326519182|dbj|BAJ96590.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 290
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Query: 51 RHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNF 102
R +D + LFV P R E D+ R FE YG+V H + R F
Sbjct: 53 RMKDAPEDEGAVNTGSNLFVTGIHP-RLTEGDVSRLFEKYGDVESCSIMLDPHTKESRGF 111
Query: 103 AFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
FV+ T E+A A E + R +S+E A
Sbjct: 112 GFVKMVTTEQAEAAKEGLQGETIEGRTLSIEKA 144
>gi|322708091|gb|EFY99668.1| RNA-binding protein (Nab3), putative [Metarhizium anisopliae ARSEF
23]
Length = 850
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ N + +RD+ F YG + + ++ + FVQ+ T EE +A+E+ ++
Sbjct: 400 IFIGNLSSDKVSKRDVFELFHRYGRLAQISLKSAYGFVQYHTIEEGQRAMENLQGIEIKG 459
Query: 128 RVISVEYALKDDSERDDRYDSP 149
R I +E + D + DR SP
Sbjct: 460 RRIHLEISRVQDKSKKDRNRSP 481
>gi|301104435|ref|XP_002901302.1| splicing factor, arginine/serine-rich, putative [Phytophthora
infestans T30-4]
gi|262100777|gb|EEY58829.1| splicing factor, arginine/serine-rich, putative [Phytophthora
infestans T30-4]
Length = 214
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 16/119 (13%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
FAF+ +E+++DA+DA+R ++N FG R R VE +RG + + RP T +
Sbjct: 42 FAFLTYENEQDASDAVRSMNNTTFGGSRIR--VEMSRG-----------IDDARPRGTQY 88
Query: 70 VINFD--PIRTRERDIKRHFEPYGNVLHVRI-RRNFAFVQFETQEEATKALESTDRSKL 125
+ P +D+K G+V+H + RR F T +E +A+ D + L
Sbjct: 89 RVKISGLPDTMSWQDLKDFLRKGGDVVHSDVDRRGNGSASFATPDEMLRAIRKLDGTDL 147
>gi|90079587|dbj|BAE89473.1| unnamed protein product [Macaca fascicularis]
Length = 219
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|194386954|dbj|BAG59843.1| unnamed protein product [Homo sapiens]
Length = 473
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 130 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 183
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 184 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 235
>gi|71033489|ref|XP_766386.1| hypothetical protein [Theileria parva strain Muguga]
gi|68353343|gb|EAN34103.1| hypothetical protein TP01_0865 [Theileria parva]
Length = 343
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 11/129 (8%)
Query: 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRH-------RDGSKS 58
+Y +AF+ F R A DA+ D + YDR RL VE+A +R R RD +S
Sbjct: 51 NYTSYAFIEFASVRSAEDAVDSRDG--YEYDRYRLRVEFAGEKRPRRYPSYERPRDRDRS 108
Query: 59 MANQRPTKTLF--VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKA 116
PT+T + VI+ P R + +K H G V +V I FV F + + A
Sbjct: 109 NRYPPPTRTDYRLVISNLPHGCRWQHLKDHMRKAGPVGYVNIVHGKGFVDFLHKSDMKYA 168
Query: 117 LESTDRSKL 125
+ D S+L
Sbjct: 169 IRKLDGSEL 177
>gi|89272025|emb|CAJ83230.1| FUS interacting protein (serine/arginine-rich) 1 [Xenopus
(Silurana) tropicalis]
Length = 257
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 11/84 (13%)
Query: 64 PTKTLFVINF-DPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEAT 114
P +LFV N D IR+ D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNIADDIRSE--DLRREFGRYGPIVDVYVPLDYYTRRPRGFAYVQFEDVRDAE 65
Query: 115 KALESTDRSKLVDRVISVEYALKD 138
AL + D+ + R I +++A D
Sbjct: 66 DALHNLDKKWICGRQIEIQFAQGD 89
>gi|395330687|gb|EJF63070.1| RNA-binding domain-containing protein [Dichomitus squalens LYAD-421
SS1]
Length = 272
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATK 115
P+ L V IRT ERD+ F +G V V I R F F+ T EEAT+
Sbjct: 73 PSNVLGVFGLS-IRTTERDLDDEFSRFGRVEKVVIVYDQRSDRSRGFGFITMSTTEEATR 131
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
++ + +L R I V+Y++ D
Sbjct: 132 CIKELNGVELNGRRIRVDYSVTD 154
>gi|121705426|ref|XP_001270976.1| RNA-binding protein (Nab3), putative [Aspergillus clavatus NRRL 1]
gi|119399122|gb|EAW09550.1| RNA-binding protein (Nab3), putative [Aspergillus clavatus NRRL 1]
Length = 898
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 82/193 (42%), Gaps = 26/193 (13%)
Query: 27 GLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKR 85
G +++P+G D ++ E+ ER +G + ++ P + LFV N R +RD+
Sbjct: 382 GDEDVPWGPDVQKKYDEFLHDERVYVTEG---LWDRFPAGSRLFVGNLPTERVTKRDLFH 438
Query: 86 HFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDR 145
F YG + + I++ + F+QF AL+ + + R I +E +
Sbjct: 439 IFHQYGKLAQISIKQAYGFIQFVDASACKHALDCEQGAVIRGRKIHLEIS---------- 488
Query: 146 YDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRS 205
P+R +P PA RR SP+Y RG P+ GP R D GR
Sbjct: 489 --KPQRNTRAGPAP------PAPRRSRSPEYSRGGPPSSRNPRGPGDRYERPYDSGR--- 537
Query: 206 PVPVYDRRRSPDY 218
VP D R P +
Sbjct: 538 -VPFSDFRDEPTH 549
>gi|296207004|ref|XP_002750459.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Callithrix jacchus]
Length = 473
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 130 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 183
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 184 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 235
>gi|336257891|ref|XP_003343767.1| hypothetical protein SMAC_04425 [Sordaria macrospora k-hell]
gi|380091605|emb|CCC10737.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 344
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 51/124 (41%), Gaps = 16/124 (12%)
Query: 20 DAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTR 79
D D+ R P G DR E +G DG+++ P LFV P R
Sbjct: 35 DGHDSSRRRSMSPNGNDRAPAKDEGQ--SKGGEEDGARN-----PGSNLFVTGIHP-RLE 86
Query: 80 ERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 131
E ++ R FE YG V +I R F FV+ T E+A A + + R +S
Sbjct: 87 EAEVTRLFEKYGEVEKCQIMKDPHTGESRGFGFVKMVTPEQAQAAKDGLQGEVIEGRTLS 146
Query: 132 VEYA 135
+E A
Sbjct: 147 IEMA 150
>gi|302404614|ref|XP_003000144.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261360801|gb|EEY23229.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
Length = 345
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATK 115
P LFV P R E ++ R FE YG V H + R F FV+ T ++A
Sbjct: 75 PGSNLFVTGIHP-RLSESEVTRLFEKYGEVEKCQIMRDPHTKESRGFGFVKMVTSDQADA 133
Query: 116 ALESTDRSKLVDRVISVEYA 135
A E ++ R +S+E A
Sbjct: 134 AKEGLQGEQIDGRTLSIEKA 153
>gi|221130960|ref|XP_002164119.1| PREDICTED: serine/arginine-rich splicing factor 4-like isoform 1
[Hydra magnipapillata]
Length = 264
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 64/147 (43%), Gaps = 22/147 (14%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA---------RGERGRHRDGSKSM 59
G+AFV FED RDA DA+ LD F R++VE A RGER R +
Sbjct: 46 GYAFVEFEDKRDADDAVYELDRKEFFGS--RITVEHATGTARGGDTRGERDRGGYSVRER 103
Query: 60 ANQRPTKT---LFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEA 113
RP T L V N R D+K +F G V + R V+F + E
Sbjct: 104 GRGRPYNTEWRLIVTNLSS-RVGWMDLKDYFRSAGEVTFTKANKERVGEGVVEFRSYREM 162
Query: 114 TKALESTDRSKLVDRVISVEYALKDDS 140
+AL+ D S+ DR I L DDS
Sbjct: 163 KRALKKFDGSEFFDRRIK----LIDDS 185
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYG--NVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
+FV +P R RD++ F+ G + V I+ +AFV+FE + +A A+ DR +
Sbjct: 12 IFVGRLNP-EARVRDLENFFKDNGFSRLKDVNIKLGYAFVEFEDKRDADDAVYELDRKEF 70
Query: 126 VDRVISVEYALKDDSERDDRYDSPRRGGY-----GRHSPY 160
I+VE+A D R + RGGY GR PY
Sbjct: 71 FGSRITVEHATGTARGGDTRGERD-RGGYSVRERGRGRPY 109
>gi|242803744|ref|XP_002484236.1| transformer-SR ribonucleoprotein, putative [Talaromyces stipitatus
ATCC 10500]
gi|218717581|gb|EED17002.1| transformer-SR ribonucleoprotein, putative [Talaromyces stipitatus
ATCC 10500]
Length = 329
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATK 115
P LFV P R E DI R FE YG+V H + R F FV+ T E+A
Sbjct: 70 PGSNLFVTGIHP-RLTEADISRLFEKYGDVESCSIMLDPHTKESRGFGFVKMVTAEQADA 128
Query: 116 ALESTDRSKLVDRVISVEYA 135
A E + +S+E A
Sbjct: 129 AKEGLQGEVIDGLTLSIEKA 148
>gi|346979687|gb|EGY23139.1| RNA-binding protein [Verticillium dahliae VdLs.17]
Length = 344
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATK 115
P LFV P R E ++ R FE YG V H + R F FV+ T ++A
Sbjct: 75 PGSNLFVTGIHP-RLSESEVTRLFEKYGEVEKCQIMRDPHTKESRGFGFVKMVTSDQADA 133
Query: 116 ALESTDRSKLVDRVISVEYA 135
A E ++ R +S+E A
Sbjct: 134 AKEGLQGEQIDGRTLSIEKA 153
>gi|58331865|ref|NP_001011096.1| serine/arginine-rich splicing factor 10 [Xenopus (Silurana)
tropicalis]
gi|54038246|gb|AAH84490.1| FUS interacting protein (serine/arginine-rich) 1 [Xenopus
(Silurana) tropicalis]
Length = 258
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 11/84 (13%)
Query: 64 PTKTLFVINF-DPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEAT 114
P +LFV N D IR+ D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNIADDIRSE--DLRREFGRYGPIVDVYVPLDYYTRRPRGFAYVQFEDVRDAE 65
Query: 115 KALESTDRSKLVDRVISVEYALKD 138
AL + D+ + R I +++A D
Sbjct: 66 DALHNLDKKWICGRQIEIQFAQGD 89
>gi|388515619|gb|AFK45871.1| unknown [Medicago truncatula]
Length = 270
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATK 115
P TL+V R +RD++ HF G V RI R FAFV ++ E+A +
Sbjct: 60 PGNTLYVTGLS-SRVTDRDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSHEDAER 118
Query: 116 ALESTDRSKLVDRVISVE 133
++ ++S L R I+VE
Sbjct: 119 CIKHLNQSVLEGRYITVE 136
>gi|357517877|ref|XP_003629227.1| ELAV-like protein [Medicago truncatula]
gi|355523249|gb|AET03703.1| ELAV-like protein [Medicago truncatula]
Length = 270
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATK 115
P TL+V R +RD++ HF G V RI R FAFV ++ E+A +
Sbjct: 60 PGNTLYVTGLS-SRVTDRDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSHEDAER 118
Query: 116 ALESTDRSKLVDRVISVE 133
++ ++S L R I+VE
Sbjct: 119 CIKHLNQSVLEGRYITVE 136
>gi|223648918|gb|ACN11217.1| Heterogeneous nuclear ribonucleoprotein Q [Salmo salar]
Length = 619
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 298 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADP---IEDPDPEVMAK---VKVL 351
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AFV F+ ++ A KAL + L
Sbjct: 352 FVRNLANSVTEEI-LEKSFSQFGKLERVKKLKDYAFVHFDERDAAVKALAQMNGKVLEGE 410
Query: 129 VISVEYALKDDSERDDR 145
I + +A D +R +R
Sbjct: 411 HIDIVFAKPPDQKRKER 427
>gi|401826505|ref|XP_003887346.1| hypothetical protein EHEL_051570 [Encephalitozoon hellem ATCC
50504]
gi|392998505|gb|AFM98365.1| hypothetical protein EHEL_051570 [Encephalitozoon hellem ATCC
50504]
Length = 299
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 74/162 (45%), Gaps = 25/162 (15%)
Query: 75 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV-ISVE 133
P E IK +F +G V V ++ + F+ F+++ T+ L RS +D ISVE
Sbjct: 9 PNHVSEEQIKEYFGQFGEVTDVSLKGTYGFLNFDSESSITRVL--NQRSHAIDGAPISVE 66
Query: 134 YALK----DDSERDDRYDSPRRGGYG-------RHSPY------GRSPSPAYRRRP-SPD 175
A DSE DRY RGGY R++PY RSP R P PD
Sbjct: 67 RANGRKRPLDSEYHDRYMDMGRGGYSPRDYRGFRNAPYPPMRYEDRSPG---RYDPRFPD 123
Query: 176 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPD 217
GRSP+Y R +G D +RS D + + P++ R D
Sbjct: 124 RYGGRSPSY-RGDGFRGDPQRSRDFCEYCNSCPIHGVREVID 164
>gi|391339441|ref|XP_003744058.1| PREDICTED: uncharacterized protein LOC100905097 [Metaseiulus
occidentalis]
Length = 355
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 18/149 (12%)
Query: 5 LHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR-------------GERGR 51
+H +AFV F D+RDA DAI L+ + + R+ VE A G R
Sbjct: 33 VHKGNYAFVEFADERDARDAISELNGTSWKGE--RIIVELANRRRRSRSQSGDRRGRNPR 90
Query: 52 HRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFE 108
+ G + R T I R +D+K F V++ RRN+ V+F+
Sbjct: 91 RKPGRITRGPPRRTDYQISIKNLSTRVSWQDLKDIFGEVAKVVYADAHNKRRNYGIVEFD 150
Query: 109 TQEEATKALESTDRSKLVDRVISVEYALK 137
T+EE + E + R I +E +K
Sbjct: 151 TKEEMNRCYEKFNGKSFNGRKIEMELNVK 179
>gi|403166701|ref|XP_003326577.2| hypothetical protein PGTG_07555 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166678|gb|EFP82158.2| hypothetical protein PGTG_07555 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 258
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 7/129 (5%)
Query: 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK 66
AGF F+ ++ RDA DA+ L+ F + RL VE+A+ RGR S +R
Sbjct: 38 MAGFGFLEYDSVRDAEDAVHDLNGRDFMGE--RLIVEFAKAPRGRDIH-SGGHGPRRGGF 94
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNF---AFVQFETQEEATKALESTDRS 123
L V T +D+K GNV + RN ++F +Q++A A+ D +
Sbjct: 95 RLLVKGLSH-ETSWQDLKDFARQAGNVTRADVDRNMPGEGLIEFASQDDADNAIRKLDGT 153
Query: 124 KLVDRVISV 132
+L V+++
Sbjct: 154 ELKGMVVTL 162
>gi|167387718|ref|XP_001738276.1| arginine/serine-rich splicing factor [Entamoeba dispar SAW760]
gi|165898565|gb|EDR25398.1| arginine/serine-rich splicing factor, putative [Entamoeba dispar
SAW760]
Length = 202
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV- 126
LF+ F P RE D++ F Y + + I+ F FV ET+E+A K +E + + +
Sbjct: 7 LFLGRF-PSEMRESDVQEMFSKYTKIERIDIKTGFCFVVCETEEDAKKIIELSQTTPFMF 65
Query: 127 -DRVISVEYALKDDSERDDRYDSPRRGGYGRHSP 159
D+ I++E + +++S ++ Y ++G R+ P
Sbjct: 66 HDKKINIELSRQNNSSKEC-YVCHQQGHIARNCP 98
>gi|358391000|gb|EHK40405.1| hypothetical protein TRIATDRAFT_153359 [Trichoderma atroviride IMI
206040]
Length = 839
Score = 46.2 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA-RG----ERGRHRDGSKSMANQR 63
GF FV F A A++ +D + D L V+ + RG E R D +K A QR
Sbjct: 657 GFGFVEFRSKSQAQAALKTMDG--YVLDGHTLGVKASHRGHDAAEERRREDVAKKAAAQR 714
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKA 116
T VI P + ++DI+ F YG + VR+ R FAF F T EA A
Sbjct: 715 ---TKIVIKNLPFQATKKDIRTLFGTYGQLRSVRVPKKADYTARGFAFADFVTPREAENA 771
Query: 117 LESTDRSKLVDRVISVEY 134
L + + L+ R + +++
Sbjct: 772 LNALKDTHLLGRRLVLDF 789
>gi|321472329|gb|EFX83299.1| hypothetical protein DAPPUDRAFT_195083 [Daphnia pulex]
Length = 221
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 75 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134
P R +ERDI+R F YG + V I+ + FV+FE +A A+ + +L +SVE+
Sbjct: 11 PYRVKERDIERFFRGYGKLREVLIKNGYGFVEFEDYRDADDAVYELNGKELCGERVSVEH 70
Query: 135 A 135
A
Sbjct: 71 A 71
>gi|440468942|gb|ELQ38069.1| hypothetical protein OOU_Y34scaffold00552g23 [Magnaporthe oryzae
Y34]
gi|440480554|gb|ELQ61213.1| hypothetical protein OOW_P131scaffold01198g45 [Magnaporthe oryzae
P131]
Length = 415
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATK 115
P LFV P R E ++ R FE YG V H R R F FV+ T ++A
Sbjct: 82 PGSNLFVTGIHP-RLTEAEVTRMFEKYGEVEKCQIMRDPHTRESRGFGFVKMVTSDQADA 140
Query: 116 ALESTDRSKLVDRVISVEYA 135
A E +L R +S+E A
Sbjct: 141 AKEGLQGEELEGRTLSIEKA 160
>gi|397478947|ref|XP_003810795.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4 [Pan
paniscus]
Length = 557
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 214 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 267
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 268 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 319
>gi|291231293|ref|XP_002735599.1| PREDICTED: RNA binding motif protein 4B-like isoform 2
[Saccoglossus kowalevskii]
Length = 237
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+FV N + RD++ FE YG VL + +N+ FV + ++EA +AL++ + + +
Sbjct: 11 VFVGNLS-KSVQSRDLRDLFEKYGKVLECDVIKNYGFVHMDKEDEAKEALDALNSKEFMG 69
Query: 128 RVISVEYA 135
I VE +
Sbjct: 70 TNIKVELS 77
>gi|356505580|ref|XP_003521568.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-splicing factor SF2-like
[Glycine max]
Length = 326
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR---------HRDGSKSM 59
G+AFV FED +DA DAIRG D + +D RL VE A G RG H +G
Sbjct: 46 GYAFVEFEDAQDAEDAIRGRDG--YDFDGHRLRVEPAHGGRGHSSSRDRYNSHSNGRGGR 103
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATK 115
R ++ +++ P +D+K H G+V ++ R V + ++
Sbjct: 104 GVSRRSEYRVLVSGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKY 163
Query: 116 ALESTDRSKL 125
A++ D S+
Sbjct: 164 AIKKLDDSEF 173
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR-----NFAFVQFETQEEATK 115
++R ++T++V N P RER+++ F YG++ H+ ++ +AFV+FE ++A
Sbjct: 2 SRRSSRTVYVGNL-PGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAED 60
Query: 116 ALESTDRSKLVDRVISVE--YALKDDSERDDRYDS 148
A+ D + VE + + S DRY+S
Sbjct: 61 AIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRYNS 95
>gi|74204113|dbj|BAE29044.1| unnamed protein product [Mus musculus]
gi|74211878|dbj|BAE29284.1| unnamed protein product [Mus musculus]
Length = 183
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNVAD-DTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|238482369|ref|XP_002372423.1| transformer-SR ribonucleoprotein, putative [Aspergillus flavus
NRRL3357]
gi|317139223|ref|XP_003189145.1| transformer-SR ribonucleoprotein [Aspergillus oryzae RIB40]
gi|317139225|ref|XP_001817354.2| transformer-SR ribonucleoprotein [Aspergillus oryzae RIB40]
gi|220700473|gb|EED56811.1| transformer-SR ribonucleoprotein, putative [Aspergillus flavus
NRRL3357]
gi|391864654|gb|EIT73949.1| hypothetical protein Ao3042_10100 [Aspergillus oryzae 3.042]
Length = 308
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATKALE 118
LFV P R E DI R FE YG+V H + R F FV+ T E+A A E
Sbjct: 69 NLFVTGIHP-RLTESDISRLFEKYGDVESCSIMVDPHTKESRGFGFVKMVTAEQADAAKE 127
Query: 119 STDRSKLVDRVISVEYA 135
+ R +S+E A
Sbjct: 128 GLQGEVIEGRTLSIEKA 144
>gi|195119159|ref|XP_002004099.1| GI19446 [Drosophila mojavensis]
gi|193914674|gb|EDW13541.1| GI19446 [Drosophila mojavensis]
Length = 196
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 86/205 (41%), Gaps = 34/205 (16%)
Query: 59 MANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN---FAFVQFETQEEATK 115
M +QR T+ ++V N + ++ D++ F YG + V I N FAFV+FE +++A K
Sbjct: 1 MTDQRGTR-VYVGNLTD-KVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEK 58
Query: 116 ALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGG--YGRHSPYGRSPSPAYRR--- 170
A + + S+L+ + VE + + R GRHS S + +R+
Sbjct: 59 ACDILNGSELLGSQLRVEISKGRPRQGRRGGPGERGRRGDVGRHSITSSSSNGGFRQQRG 118
Query: 171 ----------------RPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRR 214
R S YG R + +N RR +G S Y
Sbjct: 119 SSSSSSRHLDRGYSSGRSSTAYGGARDGGSNGFN------RRDIYNGTRES--SRYGGGT 170
Query: 215 SPDYGRNRSPNFGRYRSRSPVRRSR 239
S Y R+ + GR+RSRSPV R
Sbjct: 171 SSSYSRSGGQSGGRFRSRSPVANHR 195
>gi|111494085|gb|AAI10390.1| HNRPR protein [Homo sapiens]
Length = 607
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 264 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 317
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 318 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 369
>gi|156151392|ref|NP_001095867.1| heterogeneous nuclear ribonucleoprotein R isoform 4 [Homo sapiens]
gi|73950226|ref|XP_535365.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Canis lupus familiaris]
gi|332244970|ref|XP_003271636.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Nomascus leucogenys]
gi|332807929|ref|XP_003307911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1 [Pan
troglodytes]
gi|402853334|ref|XP_003891351.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Papio anubis]
gi|426328273|ref|XP_004024924.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Gorilla gorilla gorilla]
gi|119615447|gb|EAW95041.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_b [Homo
sapiens]
gi|380784787|gb|AFE64269.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
Length = 532
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 189 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 242
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 243 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 294
>gi|41055271|ref|NP_956827.1| splicing factor, arginine/serine-rich 13A [Danio rerio]
gi|33604116|gb|AAH56275.1| Zgc:65772 protein [Danio rerio]
gi|42542503|gb|AAH66442.1| Zgc:65772 [Danio rerio]
Length = 248
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N +R D++R F YG ++ V I R FA++QFE +A
Sbjct: 8 PNSSLFVRNISD-ESRPEDLRREFGRYGPIVDVYIPLDFYSRRPRGFAYIQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWVCGRQIEIQFAQGD 89
>gi|301754964|ref|XP_002913325.1| PREDICTED: splicing factor, arginine/serine-rich 13A-like
[Ailuropoda melanoleuca]
gi|359318923|ref|XP_003638943.1| PREDICTED: serine/arginine-rich splicing factor 10 [Canis lupus
familiaris]
Length = 183
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|255931757|ref|XP_002557435.1| Pc12g05910 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582054|emb|CAP80218.1| Pc12g05910 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 332
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATKALE 118
LFV P R E DI R FE YG+V H + R F FV T E+A A E
Sbjct: 69 NLFVTGIHP-RLTESDISRLFEKYGDVENCSIMLDPHTKESRGFGFVNMVTAEQADAAKE 127
Query: 119 STDRSKLVDRVISVEYA 135
+ R +S+E A
Sbjct: 128 GLQGEVIEGRTLSIEKA 144
>gi|83765209|dbj|BAE55352.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 311
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATKALE 118
LFV P R E DI R FE YG+V H + R F FV+ T E+A A E
Sbjct: 69 NLFVTGIHP-RLTESDISRLFEKYGDVESCSIMVDPHTKESRGFGFVKMVTAEQADAAKE 127
Query: 119 STDRSKLVDRVISVEYA 135
+ R +S+E A
Sbjct: 128 GLQGEVIEGRTLSIEKA 144
>gi|390465453|ref|XP_002750458.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Callithrix jacchus]
Length = 532
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 189 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 242
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 243 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 294
>gi|34365228|emb|CAE45953.1| hypothetical protein [Homo sapiens]
Length = 613
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 270 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 323
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 324 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 375
>gi|296476640|tpg|DAA18755.1| TPA: FUS interacting protein (serine-arginine rich) 1-like [Bos
taurus]
Length = 262
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKCICGRQIEIQFAQGD 89
>gi|123976178|ref|XP_001314467.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121896817|gb|EAY01957.1| hypothetical protein TVAG_430980 [Trichomonas vaginalis G3]
Length = 199
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 23/126 (18%)
Query: 35 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 94
YDRR E ++ E+ SKS T T+ V N T E +K F +GNV+
Sbjct: 11 YDRRSDDEEVSKEEKNDSE--SKS-----STVTIHVGNL-SFDTTEESLKAKFAEFGNVV 62
Query: 95 HVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY 146
RI ++F FV+F T+E+A KA++ + + R + +E + +
Sbjct: 63 TCRIPRRTRTGKSKSFGFVEFSTKEDADKAIKEMNEKEFEGRTLKIEIS-------NGLS 115
Query: 147 DSPRRG 152
D PRRG
Sbjct: 116 DKPRRG 121
>gi|359318927|ref|XP_003638945.1| PREDICTED: serine/arginine-rich splicing factor 10 [Canis lupus
familiaris]
Length = 262
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|347834979|emb|CCD49551.1| hypothetical protein [Botryotinia fuckeliana]
Length = 308
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATK 115
P LFV P R E ++ R FE YG+V H R R F FV+ T ++A
Sbjct: 77 PGSNLFVTGIHP-RLLEEEVSRLFEKYGDVEKCQIMRDPHTRESRGFGFVKMITSDQADA 135
Query: 116 ALESTDRSKLVDRVISVEYA 135
A E + R +S+E A
Sbjct: 136 AKEGLQGEVIEGRTLSIEKA 155
>gi|156151396|ref|NP_001095869.1| heterogeneous nuclear ribonucleoprotein R isoform 3 [Homo sapiens]
gi|297282469|ref|XP_002802270.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 2
[Macaca mulatta]
gi|380784783|gb|AFE64267.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
Length = 535
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 192 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 245
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 246 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 297
>gi|355557671|gb|EHH14451.1| hypothetical protein EGK_00378 [Macaca mulatta]
gi|355745027|gb|EHH49652.1| hypothetical protein EGM_00350 [Macaca fascicularis]
Length = 261
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|118151320|ref|NP_001071594.1| splicing factor, arginine/serine-rich 13A [Bos taurus]
gi|73586753|gb|AAI03101.1| FUS interacting protein (serine/arginine-rich) 1 [Bos taurus]
gi|296490040|tpg|DAA32153.1| TPA: FUS interacting protein (serine/arginine-rich) 1 [Bos taurus]
Length = 182
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|300360549|ref|NP_001177936.1| serine/arginine-rich splicing factor 10 isoform 5 [Homo sapiens]
gi|291393216|ref|XP_002713069.1| PREDICTED: FUS interacting protein (serine-arginine rich) 1
[Oryctolagus cuniculus]
gi|410170859|ref|XP_003960062.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Homo
sapiens]
gi|74139434|dbj|BAE40858.1| unnamed protein product [Mus musculus]
Length = 182
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|408391231|gb|EKJ70611.1| hypothetical protein FPSE_09121 [Fusarium pseudograminearum CS3096]
Length = 348
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATK 115
P LFV P + E ++ + FE YG+V H + R F FV+ T ++A
Sbjct: 72 PGSNLFVTGIHP-KLSEAEVSKMFEKYGDVEKCQIMRDPHTKESRGFGFVKMVTSDQAEA 130
Query: 116 ALESTDRSKLVDRVISVEYA 135
A E ++ R +S+E A
Sbjct: 131 AKEGLQGEQIEGRTLSIEKA 150
>gi|16905517|ref|NP_473357.1| serine/arginine-rich splicing factor 10 isoform 2 [Homo sapiens]
gi|122937372|ref|NP_001073856.1| serine/arginine-rich splicing factor 10 isoform 2 [Mus musculus]
gi|332807987|ref|XP_003307925.1| PREDICTED: uncharacterized protein LOC456627 [Pan troglodytes]
gi|344287388|ref|XP_003415435.1| PREDICTED: serine/arginine-rich splicing factor 10-like isoform 1
[Loxodonta africana]
gi|397140010|ref|XP_003846472.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Homo
sapiens]
gi|397478979|ref|XP_003810811.1| PREDICTED: serine/arginine-rich splicing factor 10 [Pan paniscus]
gi|403287348|ref|XP_003934911.1| PREDICTED: serine/arginine-rich splicing factor 10 [Saimiri
boliviensis boliviensis]
gi|403287350|ref|XP_003934912.1| PREDICTED: serine/arginine-rich splicing factor 10 [Saimiri
boliviensis boliviensis]
gi|441676930|ref|XP_004092715.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Nomascus
leucogenys]
gi|47605579|sp|O75494.1|SRS10_HUMAN RecName: Full=Serine/arginine-rich splicing factor 10; AltName:
Full=40 kDa SR-repressor protein; Short=SRrp40; AltName:
Full=FUS-interacting serine-arginine-rich protein 1;
AltName: Full=Splicing factor SRp38; AltName:
Full=Splicing factor, arginine/serine-rich 13A; AltName:
Full=TLS-associated protein with Ser-Arg repeats;
Short=TASR; Short=TLS-associated protein with SR
repeats; AltName: Full=TLS-associated serine-arginine
protein; Short=TLS-associated SR protein
gi|47605750|sp|Q9R0U0.2|SRS10_MOUSE RecName: Full=Serine/arginine-rich splicing factor 10; AltName:
Full=FUS-interacting serine-arginine-rich protein 1;
AltName: Full=Neural-salient serine/arginine-rich
protein; AltName: Full=Neural-specific SR protein;
AltName: Full=Splicing factor, arginine/serine-rich 13A;
AltName: Full=TLS-associated protein with Ser-Arg
repeats; Short=TASR; Short=TLS-associated protein with
SR repeats; AltName: Full=TLS-associated serine-arginine
protein; Short=TLS-associated SR protein
gi|18034489|gb|AAL57514.1|AF449427_1 SRrp40 [Homo sapiens]
gi|3327957|gb|AAC26715.1| TLS-associated protein TASR-2 [Mus musculus]
gi|3327976|gb|AAC26727.1| TLS-associated protein TASR-2 [Homo sapiens]
gi|12852132|dbj|BAB29286.1| unnamed protein product [Mus musculus]
gi|13477159|gb|AAH05039.1| FUS interacting protein (serine/arginine-rich) 1 [Homo sapiens]
gi|15787483|gb|AAL06099.1| TLS-associated SR protein 2 [Homo sapiens]
gi|25006522|gb|AAN65380.1| splicing factor SRp38 [Homo sapiens]
gi|29144881|gb|AAH43060.1| FUS interacting protein (serine-arginine rich) 1 [Mus musculus]
gi|52789308|gb|AAH83082.1| FUS interacting protein (serine-arginine rich) 1 [Mus musculus]
gi|74214326|dbj|BAE40403.1| unnamed protein product [Mus musculus]
gi|74214388|dbj|BAE40431.1| unnamed protein product [Mus musculus]
gi|410223010|gb|JAA08724.1| serine/arginine-rich splicing factor 10 [Pan troglodytes]
gi|410261892|gb|JAA18912.1| serine/arginine-rich splicing factor 10 [Pan troglodytes]
gi|410261896|gb|JAA18914.1| serine/arginine-rich splicing factor 10 [Pan troglodytes]
gi|410261898|gb|JAA18915.1| serine/arginine-rich splicing factor 10 [Pan troglodytes]
gi|410302464|gb|JAA29832.1| serine/arginine-rich splicing factor 10 [Pan troglodytes]
gi|410302466|gb|JAA29833.1| serine/arginine-rich splicing factor 10 [Pan troglodytes]
gi|410302468|gb|JAA29834.1| serine/arginine-rich splicing factor 10 [Pan troglodytes]
gi|410330569|gb|JAA34231.1| serine/arginine-rich splicing factor 10 [Pan troglodytes]
gi|410330573|gb|JAA34233.1| serine/arginine-rich splicing factor 10 [Pan troglodytes]
gi|417398022|gb|JAA46044.1| Putative serine/arginine-rich splicing factor 10 [Desmodus
rotundus]
Length = 262
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|5730079|ref|NP_006616.1| serine/arginine-rich splicing factor 10 isoform 1 [Homo sapiens]
gi|6753820|ref|NP_034308.1| serine/arginine-rich splicing factor 10 isoform 1 [Mus musculus]
gi|346986279|ref|NP_001231297.1| serine/arginine-rich splicing factor 10 isoform 2 [Sus scrofa]
gi|114554649|ref|XP_001166460.1| PREDICTED: uncharacterized protein LOC456627 isoform 3 [Pan
troglodytes]
gi|332266729|ref|XP_003282350.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Nomascus
leucogenys]
gi|344287394|ref|XP_003415438.1| PREDICTED: serine/arginine-rich splicing factor 10-like isoform 4
[Loxodonta africana]
gi|403287342|ref|XP_003934908.1| PREDICTED: serine/arginine-rich splicing factor 10 [Saimiri
boliviensis boliviensis]
gi|410032453|ref|XP_003949372.1| PREDICTED: uncharacterized protein LOC456627 [Pan troglodytes]
gi|426328337|ref|XP_004024959.1| PREDICTED: serine/arginine-rich splicing factor 10 [Gorilla gorilla
gorilla]
gi|441676940|ref|XP_004092716.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Nomascus
leucogenys]
gi|16265857|gb|AAL16665.1|AF419331_1 TLS-associated protein TASR-1 [Homo sapiens]
gi|2961107|gb|AAC70916.1| TLS-associated protein with SR repeats [Mus musculus]
gi|2961149|gb|AAC70918.1| TLS-associated protein TASR [Homo sapiens]
gi|7022446|dbj|BAA91601.1| unnamed protein product [Homo sapiens]
gi|12654547|gb|AAH01107.1| FUS interacting protein (serine/arginine-rich) 1 [Homo sapiens]
gi|15787482|gb|AAL06098.1| TLS-associated SR protein 1 [Homo sapiens]
gi|25006524|gb|AAN65381.1| splicing factor SRp38-2 [Homo sapiens]
gi|74178032|dbj|BAE29809.1| unnamed protein product [Mus musculus]
gi|74195900|dbj|BAE30509.1| unnamed protein product [Mus musculus]
gi|74214411|dbj|BAE40441.1| unnamed protein product [Mus musculus]
gi|261861046|dbj|BAI47045.1| splicing factor, arginine/serine-rich 13A [synthetic construct]
gi|312153330|gb|ADQ33177.1| FUS interacting protein (serine/arginine-rich) 1 [synthetic
construct]
gi|410223008|gb|JAA08723.1| serine/arginine-rich splicing factor 10 [Pan troglodytes]
gi|410261894|gb|JAA18913.1| serine/arginine-rich splicing factor 10 [Pan troglodytes]
gi|410302462|gb|JAA29831.1| serine/arginine-rich splicing factor 10 [Pan troglodytes]
gi|410330571|gb|JAA34232.1| serine/arginine-rich splicing factor 10 [Pan troglodytes]
gi|417396659|gb|JAA45363.1| Putative serine/arginine-rich splicing factor [Desmodus rotundus]
Length = 183
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|346986281|ref|NP_001231298.1| serine/arginine-rich splicing factor 10 isoform 1 [Sus scrofa]
gi|338784425|gb|AEI98875.1| serine/arginine-rich splicing factor 10 isoform 2 [Sus scrofa]
Length = 262
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|303310709|ref|XP_003065366.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240105028|gb|EER23221.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 864
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 77/183 (42%), Gaps = 38/183 (20%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRS 123
P LFV N R +RD+ F YG + + I+ + FVQF ALE+
Sbjct: 403 PGSRLFVGNLPSERVTKRDLFHLFHKYGKLAQISIKPAYGFVQFMDATSCRNALEAEQGG 462
Query: 124 KLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDY------G 177
+ R I +E + P+R R++P PS RR SPDY G
Sbjct: 463 VIRGRKIHLEIS------------KPQRS--SRNAPEPSKPS-GLRRSRSPDYSRNRDVG 507
Query: 178 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYR-SRSPVR 236
RG +RY+ D++ S + GR DYG +R + YR +RSPVR
Sbjct: 508 RGGRLGSERYDRVAGDRKSSVNEGR--------------DYGDHR--HRDNYRPTRSPVR 551
Query: 237 RSR 239
SR
Sbjct: 552 GSR 554
>gi|427777641|gb|JAA54272.1| Putative sf2 [Rhipicephalus pulchellus]
Length = 223
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE---RGRHRDGSKSMANQRPTK 66
FAFV F+D RDA DA++ D + YD RL VE+ RG RG G R ++
Sbjct: 47 FAFVEFDDPRDAEDAVQARDG--YDYDGYRLRVEFPRGSAPGRGSMGPGRGRGPPARRSQ 104
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALEST 120
+++ P +D+K H G+V + + ++ F+++E + A K L+ +
Sbjct: 105 YRVLVSGLPPSGSWQDLKDHMREAGDVCYADVFKDGTGVVEFLRYEDMKYAVKKLDDS 162
>gi|407920811|gb|EKG13991.1| hypothetical protein MPH_08865 [Macrophomina phaseolina MS6]
Length = 286
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATK 115
P LFV P R E ++ R FE YG+V H + R F FV+ T E+A
Sbjct: 70 PGSNLFVTGIHP-RLSEEEVTRLFEKYGDVEKCNIMRDPHTKESRGFGFVKMVTPEQADA 128
Query: 116 ALESTDRSKLVDRVISVEYA 135
A E + R +S+E A
Sbjct: 129 AKEGLQGEVIEGRTLSIEKA 148
>gi|397478941|ref|XP_003810792.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1 [Pan
paniscus]
Length = 616
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 273 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 326
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 327 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 378
>gi|359496147|ref|XP_003635162.1| PREDICTED: uncharacterized RNA-binding protein C25G10.01-like
[Vitis vinifera]
Length = 228
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATK 115
P TL+V R ER ++ HF G V RI R FAFV ET E+A +
Sbjct: 57 PGNTLYVTGLS-TRVTERALEDHFSREGKVASCFLVMEPRTRISRGFAFVTMETVEDANR 115
Query: 116 ALESTDRSKLVDRVISVE 133
++ ++S L R I+VE
Sbjct: 116 CIKHLNQSVLEGRYITVE 133
>gi|444520122|gb|ELV12918.1| Serine/arginine-rich splicing factor 2 [Tupaia chinensis]
Length = 361
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 58/130 (44%), Gaps = 20/130 (15%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALE 118
+L V N RT ++R FE YG + V I R FAFV+F + A AL+
Sbjct: 5 SLKVDNLT-YRTSPDTLRRVFEKYGRIGDVYIPRDRFTKASRGFAFVRFYCKNHAEDALD 63
Query: 119 STDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGR 178
+ D L R + V+ A +D P YGR G++P P + DYGR
Sbjct: 64 AVDGVVLDGRKLRVQMAY---------HDGPPDLHYGRRC--GKTPPPEGKWEKDDDYGR 112
Query: 179 GRSPAYDRYN 188
RSP R++
Sbjct: 113 SRSPRRQRFS 122
>gi|395821029|ref|XP_003783852.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Otolemur garnettii]
Length = 532
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 189 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 242
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 243 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 294
>gi|71659778|ref|XP_821609.1| poly(A)-binding protein [Trypanosoma cruzi strain CL Brener]
gi|459650|gb|AAC46487.1| poly(A) binding protein [Trypanosoma cruzi]
gi|515321|gb|AAC46489.1| poly(A) binding protein [Trypanosoma cruzi]
gi|2854066|gb|AAC02537.1| poly(A)-binding protein [Trypanosoma cruzi]
gi|2854068|gb|AAC02538.1| poly(A)-binding protein [Trypanosoma cruzi]
gi|70886993|gb|EAN99758.1| poly(A)-binding protein, putative [Trypanosoma cruzi]
gi|407408287|gb|EKF31789.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi marinkellei]
gi|407847529|gb|EKG03215.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi]
Length = 550
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 67/155 (43%), Gaps = 16/155 (10%)
Query: 8 AGFAFVYFEDDRDAADAIRGLD--NIPFGYDRRRLSV----EWARGERGRHRDGSKSMAN 61
GFA+V + AA A+ LD P + +LSV +R R R +
Sbjct: 224 VGFAYVAYATHEAAAKAVEELDEKESPLAKEGMKLSVCRFRSRDERQRERERLRRERQQQ 283
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEA 113
L+V NFD T ER +K FE G + V R+ R F FV F+ Q A
Sbjct: 284 HSKYPNLYVKNFDDTVTSER-LKELFERCGETVSVSVMMDRATRVSRCFGFVSFKEQSAA 342
Query: 114 TKALESTDRSK-LVDRVISVEYALKDDSERDDRYD 147
++A++ S L R + V YAL+ D+ R D
Sbjct: 343 SRAIQELHGSTALGPRPLFVTYALRKDARRQTLED 377
>gi|156052172|ref|XP_001592047.1| hypothetical protein SS1G_07495 [Sclerotinia sclerotiorum 1980]
gi|154705271|gb|EDO05010.1| hypothetical protein SS1G_07495 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 313
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATK 115
P LFV P R E ++ R FE YG+V H R R F FV+ T ++A
Sbjct: 77 PGSNLFVTGIHP-RLLEEEVSRLFEKYGDVEKCQIMRDPHTRESRGFGFVKMITSDQADA 135
Query: 116 ALESTDRSKLVDRVISVEYA 135
A E + R +S+E A
Sbjct: 136 AKEGLQGEVIEGRTLSIEKA 155
>gi|154312862|ref|XP_001555758.1| hypothetical protein BC1G_05132 [Botryotinia fuckeliana B05.10]
Length = 315
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATK 115
P LFV P R E ++ R FE YG+V H R R F FV+ T ++A
Sbjct: 77 PGSNLFVTGIHP-RLLEEEVSRLFEKYGDVEKCQIMRDPHTRESRGFGFVKMITSDQADA 135
Query: 116 ALESTDRSKLVDRVISVEYA 135
A E + R +S+E A
Sbjct: 136 AKEGLQGEVIEGRTLSIEKA 155
>gi|126328572|ref|XP_001362618.1| PREDICTED: serine/arginine-rich splicing factor 10-like
[Monodelphis domestica]
Length = 262
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|300360547|ref|NP_001177934.1| serine/arginine-rich splicing factor 10 isoform 3 [Homo sapiens]
gi|307133714|ref|NP_001182513.1| splicing factor, arginine/serine-rich 13A [Macaca mulatta]
gi|16265859|gb|AAL16666.1|AF419332_1 TLS-associated protein TASR-2 [Homo sapiens]
gi|193786066|dbj|BAG50956.1| unnamed protein product [Homo sapiens]
Length = 261
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|410911524|ref|XP_003969240.1| PREDICTED: uncharacterized protein LOC101080136 isoform 2 [Takifugu
rubripes]
Length = 374
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136
R RE D++R F+ YG +L V ++ + FV+F+ +A A+ + +L + VE+
Sbjct: 12 RARENDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKELCGERVIVEHT- 70
Query: 137 KDDSERDDRYDS---PRRGGYGR 156
RD Y PR GGYGR
Sbjct: 71 -KGPRRDGGYSGRSKPRPGGYGR 92
>gi|320034780|gb|EFW16723.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 870
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 77/183 (42%), Gaps = 32/183 (17%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRS 123
P LFV N R +RD+ F YG + + I+ + FVQF ALE+
Sbjct: 403 PGSRLFVGNLPSERVTKRDLFHLFHKYGKLAQISIKPAYGFVQFMDATSCRNALEAEQGG 462
Query: 124 KLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDY------G 177
+ R I + + D P+R R++P PS RR SPDY G
Sbjct: 463 VIRGRKIRLLTTV------DLEISKPQRS--SRNAPEPSKPS-GLRRSRSPDYSRNRDVG 513
Query: 178 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYR-SRSPVR 236
RG +RY+ D++ S + GR DYG +R + YR +RSPVR
Sbjct: 514 RGGRLGSERYDRVAGDRKSSVNEGR--------------DYGDHR--HRDNYRPTRSPVR 557
Query: 237 RSR 239
SR
Sbjct: 558 GSR 560
>gi|218188085|gb|EEC70512.1| hypothetical protein OsI_01613 [Oryza sativa Indica Group]
Length = 447
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 16/130 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR---------HRDGSKSM 59
G+AFV FED RDA DAI G D + +D RL VE A G RG+ + G +
Sbjct: 235 GYAFVEFEDPRDADDAICGRDR--YNFDGYRLRVELAHGGRGQSYSYDRPRSYSSGRRGG 292
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATK 115
++R + V P +D+K H G+V + R V + T E+
Sbjct: 293 VSRRSEYRVMVTGL-PSSASWQDLKDHMRRAGDVCFSDVYREAGATVGIVDYTTYEDMKY 351
Query: 116 ALESTDRSKL 125
A+ D S+
Sbjct: 352 AIRKLDDSEF 361
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 11/110 (10%)
Query: 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR-----NFAFVQFETQEEATK 115
++R ++T++V N P RER+++ F YG +L + ++ +AFV+FE +A
Sbjct: 191 SRRNSRTIYVGNL-PGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADD 249
Query: 116 ALESTDRSKLVDRVISVEYAL--KDDSERDDR---YDSPRRGGYGRHSPY 160
A+ DR + VE A + S DR Y S RRGG R S Y
Sbjct: 250 AICGRDRYNFDGYRLRVELAHGGRGQSYSYDRPRSYSSGRRGGVSRRSEY 299
>gi|62897549|dbj|BAD96714.1| FUS interacting protein (serine-arginine rich) 1 isoform 2 variant
[Homo sapiens]
Length = 262
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|74179690|dbj|BAE22485.1| unnamed protein product [Mus musculus]
Length = 262
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|71996524|ref|NP_495307.3| Protein RSP-5, isoform a [Caenorhabditis elegans]
gi|50897847|sp|Q10021.3|RSP5_CAEEL RecName: Full=Probable splicing factor, arginine/serine-rich 5;
AltName: Full=CeSC35-2; AltName: Full=RNA-binding
protein srp-3
gi|351064335|emb|CCD72697.1| Protein RSP-5, isoform a [Caenorhabditis elegans]
Length = 208
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE-RGRHRDG 55
IS+ Y GFAFV FED RDA DA LD RL VE ARG+ RG R G
Sbjct: 31 ISMKY-GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMARGKPRGNDRHG 83
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 75 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
P RERD++R + YG + ++ ++ FAFV FE +A A D
Sbjct: 10 PYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLD 56
>gi|359318925|ref|XP_003638944.1| PREDICTED: serine/arginine-rich splicing factor 10 [Canis lupus
familiaris]
Length = 173
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|340056333|emb|CCC50664.1| poly(A)-binding protein [Trypanosoma vivax Y486]
Length = 548
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 89/208 (42%), Gaps = 26/208 (12%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNI--PFGYDRRRLSV------EWARGERGRHRDGSKSM 59
GFA+V + A A+ LD+ P + +LSV E + ER R R + +
Sbjct: 224 VGFAYVAYATHEAAVKAVEELDDKENPLAKEGMKLSVCRFRSREERQRERERLRRERQQL 283
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQE 111
++ P L+V NFD T ER +K FE +G + V ++ R F FV F+ Q
Sbjct: 284 YSKYPN--LYVKNFDDTVTSER-LKELFERFGETVSVSVMVDKATKVSRCFGFVSFKEQN 340
Query: 112 EATKALESTDRSK-LVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRR 170
A++A++ S L R + V YAL+ D+ R D + R +P G
Sbjct: 341 SASRAIQELHGSTALGPRPLFVTYALRKDARRQTLEDMRNKQPRMRQTPMGGL----MGG 396
Query: 171 RPSPDYGRGRSPAYDRYNGPVYDQRRSP 198
P G PA +NG + R P
Sbjct: 397 MMGPQLGFMNPPAM--FNGVPFMNTRMP 422
>gi|4001720|dbj|BAA35092.1| neural specific sr protein NSSR 1 [Mus musculus]
Length = 262
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|4001722|dbj|BAA35093.1| neural specific sr protein NSSR 2 [Mus musculus]
Length = 183
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|148697994|gb|EDL29941.1| heterogeneous nuclear ribonucleoprotein R [Mus musculus]
Length = 607
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 265 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 318
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 319 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 370
>gi|71043780|ref|NP_001020909.1| serine/arginine-rich splicing factor 10 [Rattus norvegicus]
gi|68533686|gb|AAH98831.1| FUS interacting protein (serine-arginine rich) 1 [Rattus
norvegicus]
Length = 164
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|303389449|ref|XP_003072957.1| putative arginine/serine rich pre-mRNA splicing factor
[Encephalitozoon intestinalis ATCC 50506]
gi|303302100|gb|ADM11597.1| putative arginine/serine rich pre-mRNA splicing factor
[Encephalitozoon intestinalis ATCC 50506]
Length = 301
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 74/164 (45%), Gaps = 27/164 (16%)
Query: 75 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV-ISVE 133
P E IK +F +G V + ++ + F+ F+++ T+ L RS +D + ISVE
Sbjct: 9 PSHVSEEQIKEYFGQFGEVTDLSLKGTYGFLNFDSESSITRVL--NQRSHAIDGLPISVE 66
Query: 134 YALK----DDSERDDRYDSPRRGGYG--------RHSPY-------GRSPSPAYRRRP-S 173
A D E DRY RGGY R++PY GRSP R P
Sbjct: 67 RANGRKRPLDGEYHDRYMDMGRGGYSPHRDYRGFRNAPYPPSMRYDGRSPG---RYDPRF 123
Query: 174 PDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPD 217
PD GRSP Y R +G D +RS D + + P++ R D
Sbjct: 124 PDRYGGRSPEY-RGDGFRGDPQRSRDFCEYCNSCPIHGIRDVVD 166
>gi|384488552|gb|EIE80732.1| hypothetical protein RO3G_05437 [Rhizopus delemar RA 99-880]
Length = 238
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEE 112
N P LF+ IRT D++ F YG V+ H R R F F++ E+
Sbjct: 56 NTNPGDNLFITGLT-IRTNGADLEDIFGKYGKVIKAEIMYDPHTRESRGFGFIRMANAED 114
Query: 113 ATKALESTDRSKLVDRVISVEYA 135
A +AL +++ RV++VE A
Sbjct: 115 AERALNGVSGTEIDGRVVTVEKA 137
>gi|71897267|ref|NP_001026077.1| splicing factor, arginine/serine-rich 13A [Gallus gallus]
gi|53126728|emb|CAG30979.1| hypothetical protein RCJMB04_1g4 [Gallus gallus]
Length = 262
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|73950238|ref|XP_866575.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 8
[Canis lupus familiaris]
gi|296207006|ref|XP_002750460.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Callithrix jacchus]
gi|297282471|ref|XP_002802271.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 3
[Macaca mulatta]
gi|332244974|ref|XP_003271638.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Nomascus leucogenys]
gi|332807933|ref|XP_003307912.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2 [Pan
troglodytes]
gi|402853338|ref|XP_003891353.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Papio anubis]
gi|426328277|ref|XP_004024926.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Gorilla gorilla gorilla]
gi|119615446|gb|EAW95040.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_a [Homo
sapiens]
gi|194390156|dbj|BAG61840.1| unnamed protein product [Homo sapiens]
Length = 494
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 151 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 204
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 205 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 256
>gi|410915937|ref|XP_003971443.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Takifugu rubripes]
Length = 598
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
K LFV N T E +++ F YGN+ V+ +++AF+ FE ++ A KALE + +
Sbjct: 302 VKVLFVRNLANSVTEEI-LEKSFSEYGNLERVKKLKDYAFIHFEERDGAVKALEEMNGKE 360
Query: 125 LVDRVISVEYALKDDSERDDR 145
L I + +A D +R +R
Sbjct: 361 LEGEPIEIVFAKPPDQKRKER 381
>gi|400596147|gb|EJP63931.1| RNA recognition domain-containing protein [Beauveria bassiana ARSEF
2860]
Length = 334
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATK 115
P LFV P R E ++ + FE YG+V +I R F FV+ T E+A
Sbjct: 68 PGSNLFVTGIHP-RLSEAEVTKMFEKYGDVEKCQIMKDPHSKESRGFGFVKMVTPEQADA 126
Query: 116 ALESTDRSKLVDRVISVEYA 135
A E + R +S+E A
Sbjct: 127 AREGLQGEVIEGRTLSIEKA 146
>gi|417410478|gb|JAA51712.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 409
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 66 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 119
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 120 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 171
>gi|343960931|dbj|BAK62055.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 497
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 154 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 207
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 208 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 259
>gi|52140013|gb|AAU29334.1| ASF/SF2-like pre-mRNA splicing factor SRP31' [Zea mays]
gi|413944989|gb|AFW77638.1| ASF/SF2-like pre-mRNA splicing factor SRP31 [Zea mays]
Length = 253
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 54/129 (41%), Gaps = 15/129 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG--------RHRDGSKSMA 60
GFAFV FED RDA DAI G D + +D RL VE A G RG + + A
Sbjct: 46 GFAFVEFEDARDAEDAIYGRDG--YNFDGHRLRVELAHGGRGTSSFDRSSSYSSAGQRGA 103
Query: 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKA 116
++R + V P +D+K H G+V + R + E+ A
Sbjct: 104 SKRSDYRVMVTGL-PSSASWQDLKDHMRRAGDVCFTDVYREAGATIGIADYTNYEDMKHA 162
Query: 117 LESTDRSKL 125
+ D S+
Sbjct: 163 IRKLDDSEF 171
>gi|417410140|gb|JAA51547.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 369
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 26 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 79
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 80 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 131
>gi|397478945|ref|XP_003810794.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3 [Pan
paniscus]
Length = 578
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 235 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 288
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 289 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 340
>gi|348570784|ref|XP_003471177.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Cavia
porcellus]
Length = 173
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|197097312|ref|NP_001125358.1| splicing factor, arginine/serine-rich 13A [Pongo abelii]
gi|55727814|emb|CAH90660.1| hypothetical protein [Pongo abelii]
Length = 262
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|410170856|ref|XP_003960061.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Homo
sapiens]
gi|426328339|ref|XP_004024960.1| PREDICTED: serine/arginine-rich splicing factor 10 [Gorilla gorilla
gorilla]
Length = 217
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|344287390|ref|XP_003415436.1| PREDICTED: serine/arginine-rich splicing factor 10-like isoform 2
[Loxodonta africana]
Length = 173
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|13435603|gb|AAH04679.1| Hnrpr protein, partial [Mus musculus]
Length = 601
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 259 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 312
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 313 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 364
>gi|449550007|gb|EMD40972.1| hypothetical protein CERSUDRAFT_111545 [Ceriporiopsis subvermispora
B]
Length = 286
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATK 115
P+ L V IRT ERD+ F +G V V I R F F+ T EEA +
Sbjct: 77 PSNVLGVFGLS-IRTTERDLDDEFSRFGRVDKVTIVYDQRSDRSRGFGFITMSTTEEAGR 135
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
++ + +L R I V+Y++ D
Sbjct: 136 CIKELNGVELNGRRIRVDYSVTD 158
>gi|358377462|gb|EHK15146.1| hypothetical protein TRIVIDRAFT_185271 [Trichoderma virens Gv29-8]
Length = 347
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATK 115
P LFV P R E ++ + FE YG V H + R F FV+ T E+A
Sbjct: 72 PGSNLFVTGIHP-RLSEAEVSKMFEKYGEVEKCQIMRDPHTKESRGFGFVKMVTSEQAEA 130
Query: 116 ALESTDRSKLVDRVISVEYA 135
A E + R +S+E A
Sbjct: 131 AKEGLQGEVIEGRTMSIEKA 150
>gi|294868390|ref|XP_002765514.1| Arginine/serine-rich-splicing factor, putative [Perkinsus marinus
ATCC 50983]
gi|239865557|gb|EEQ98231.1| Arginine/serine-rich-splicing factor, putative [Perkinsus marinus
ATCC 50983]
Length = 477
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATKA 116
+Q + + P RE +++ F G V V+I R +AF+QF+T+ A +A
Sbjct: 158 SQAGCASRIWVGGLPSDVREVELEDRFGKIGRVTDVKICQSSRDTYAFLQFDTEGAAAEA 217
Query: 117 LESTDRSKLVDRVISVEYALKDDSERDDRYDS 148
+E D++K I V +A + SE YDS
Sbjct: 218 IEDVDQTKFGGFTIKVAHATRQSSESRRPYDS 249
>gi|224068334|ref|XP_002302710.1| predicted protein [Populus trichocarpa]
gi|222844436|gb|EEE81983.1| predicted protein [Populus trichocarpa]
Length = 252
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 14/129 (10%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+AFV FE+ RDA DAIRG D + +D RL VE A G RG S + +
Sbjct: 46 GYAFVEFEEARDAEDAIRGRDG--YDFDGHRLRVELAHGGRGHSSSDRHSSYSGGRGRGG 103
Query: 69 --------FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKA 116
V+ P +D+K H G+V ++ R+ V + E+ A
Sbjct: 104 ASRRSEYRVVVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYEDMKYA 163
Query: 117 LESTDRSKL 125
++ D S+
Sbjct: 164 IKKIDDSEF 172
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR-----NFAFVQFETQEEATK 115
+ R ++TL+V N P RE++++ F YG V H+ ++ +AFV+FE +A
Sbjct: 2 SSRASRTLYVGNL-PGDIREKEVEDLFYKYGPVAHIDLKIPPRPPGYAFVEFEEARDAED 60
Query: 116 ALESTDRSKLVDRVISVEYA 135
A+ D + VE A
Sbjct: 61 AIRGRDGYDFDGHRLRVELA 80
>gi|212539754|ref|XP_002150032.1| transformer-SR ribonucleoprotein, putative [Talaromyces marneffei
ATCC 18224]
gi|210067331|gb|EEA21423.1| transformer-SR ribonucleoprotein, putative [Talaromyces marneffei
ATCC 18224]
Length = 341
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATK 115
P LFV P R E DI R FE YG+V H + R F FV+ T E+A
Sbjct: 68 PGSNLFVTGIHP-RLTEADISRLFEKYGDVENCSIMLDPHTKESRGFGFVKMVTAEQADA 126
Query: 116 ALESTDRSKLVDRVISVEYA 135
A E + +S+E A
Sbjct: 127 AKEGLQGEVIDGLTLSIEKA 146
>gi|74219109|dbj|BAE26696.1| unnamed protein product [Mus musculus]
Length = 610
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 268 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 321
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 322 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 373
>gi|403287344|ref|XP_003934909.1| PREDICTED: serine/arginine-rich splicing factor 10 [Saimiri
boliviensis boliviensis]
Length = 173
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|355694936|gb|AER99836.1| heteroproteinous nuclear ribonucleoprotein R [Mustela putorius
furo]
Length = 363
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 21 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 74
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 75 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 126
>gi|348518702|ref|XP_003446870.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Oreochromis
niloticus]
Length = 243
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 12/126 (9%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN-------- 61
FAFV FED RDA DA+ G D + YD RL VE+ R RG R G
Sbjct: 56 FAFVEFEDPRDAEDAVYGRDG--YDYDGYRLRVEFPRSGRGGGRGGGGGALGTPRGRYGP 113
Query: 62 -QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALES 119
R ++ +++ P +D+K H G+V + + R+ V+F +E+ T A+
Sbjct: 114 PSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAIRK 173
Query: 120 TDRSKL 125
D +K
Sbjct: 174 LDNTKF 179
>gi|346469351|gb|AEO34520.1| hypothetical protein [Amblyomma maculatum]
Length = 204
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LF+ N P TR D++ F YG + V I R FA+VQFE +A
Sbjct: 9 PNSSLFIRNV-PDGTRPDDLRSLFGKYGPLTDVYIPVDYYTRRPRGFAYVQFEDLRDAED 67
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
A+ S DR++ R + +E+A D
Sbjct: 68 AMYSLDRTRFYGRELEIEFAQGD 90
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49
GFA+V FED RDA DA+ LD F R L +E+A+G+R
Sbjct: 53 GFAYVQFEDLRDAEDAMYSLDRTRFY--GRELEIEFAQGDR 91
>gi|291231291|ref|XP_002735598.1| PREDICTED: RNA binding motif protein 4B-like isoform 1
[Saccoglossus kowalevskii]
Length = 238
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+FV N + RD++ FE YG VL + +N+ FV + ++EA +AL++ + + +
Sbjct: 11 VFVGNLSK-SVQSRDLRDLFEKYGKVLECDVIKNYGFVHMDKEDEAKEALDALNSKEFMG 69
Query: 128 RVISVEYA 135
I VE +
Sbjct: 70 TNIKVELS 77
>gi|15292733|gb|AAK92735.1| putative transformer-SR ribonucleoprotein [Arabidopsis thaliana]
Length = 352
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 56 SKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQF 107
S S + P +L+V R ERD++ HF G V V + R F F+
Sbjct: 35 SVSSDAENPGNSLYVTGLS-HRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISM 93
Query: 108 ETQEEATKALESTDRSKLVDRVISVEYA 135
++ +A + + S D S L RVI+VE A
Sbjct: 94 KSVGDANRCIRSLDHSVLQGRVITVEKA 121
>gi|425773488|gb|EKV11840.1| hypothetical protein PDIP_54740 [Penicillium digitatum Pd1]
gi|425775784|gb|EKV14036.1| hypothetical protein PDIG_35190 [Penicillium digitatum PHI26]
Length = 343
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNV--------LHVRIRRNFAFVQFETQEEATKALE 118
LFV P R E DI R FE YG+V H + R F FV T E+A A E
Sbjct: 69 NLFVTGIHP-RLTESDISRLFEKYGDVDNCSIMLDPHTKESRGFGFVNMVTAEQADAAKE 127
Query: 119 STDRSKLVDRVISVEYA 135
+ R +S+E A
Sbjct: 128 GLQGEVIEGRTLSIEKA 144
>gi|226287356|gb|EEH42869.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 305
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATKALE 118
LFV P R E D+ R FE YG+V H + R F FV+ T E+A A E
Sbjct: 70 NLFVTGIHP-RLTESDVSRLFEKYGDVENCSIMLDPHTKESRGFGFVKMVTAEQADAAKE 128
Query: 119 STDRSKLVDRVISVEYA 135
+ R +S+E A
Sbjct: 129 GLQGEVIEGRTLSIEKA 145
>gi|225677904|gb|EEH16188.1| hypothetical protein PABG_06275 [Paracoccidioides brasiliensis
Pb03]
Length = 308
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATKALE 118
LFV P R E D+ R FE YG+V H + R F FV+ T E+A A E
Sbjct: 73 NLFVTGIHP-RLTESDVSRLFEKYGDVENCSIMLDPHTKESRGFGFVKMVTAEQADAAKE 131
Query: 119 STDRSKLVDRVISVEYA 135
+ R +S+E A
Sbjct: 132 GLQGEVIEGRTLSIEKA 148
>gi|442761097|gb|JAA72707.1| Putative splicing factor sc35, partial [Ixodes ricinus]
Length = 226
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATK 115
P +LF+ N P TR D++ F YG + V I R FA+VQFE +A
Sbjct: 30 PNSSLFIRNV-PDGTRPEDLRSLFGKYGPITDVYIPVDYYARRPRGFAYVQFEDLRDAED 88
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
A+ S DR++ R + +E+A D
Sbjct: 89 AMYSLDRTRFYGRELEIEFAQGD 111
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49
GFA+V FED RDA DA+ LD F R L +E+A+G+R
Sbjct: 74 GFAYVQFEDLRDAEDAMYSLDRTRFY--GRELEIEFAQGDR 112
>gi|300706781|ref|XP_002995630.1| hypothetical protein NCER_101418 [Nosema ceranae BRL01]
gi|239604808|gb|EEQ81959.1| hypothetical protein NCER_101418 [Nosema ceranae BRL01]
Length = 379
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 70/175 (40%), Gaps = 36/175 (20%)
Query: 83 IKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVIS----------- 131
I +F+ YG + + +AFV+F+ +A L + D RV+
Sbjct: 17 IYNYFKAYGEIDSYNFKGQYAFVEFKNDRDAENILNTRDIEINGHRVVVEASNSKGKFQG 76
Query: 132 ----VEYALKDDSERDDR----YDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPA 183
E+ SER D Y S RR SP Y R SP Y RSP
Sbjct: 77 EHKRQEFHFNSLSERPDSNNVDYQSSRR-------------SPRYDDRRSPRYDDRRSPR 123
Query: 184 YDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYG--RNRSPNFGRYRSRSPVR 236
YD P YD RR+ +G RS P YD RRSP Y RN N YR + R
Sbjct: 124 YDDRRSPRYDDRRNERYGNRRS--PRYDDRRSPRYDDRRNSQYNENFYRHHNDFR 176
>gi|449488891|ref|XP_004174435.1| PREDICTED: LOW QUALITY PROTEIN: serine/arginine-rich splicing
factor 10 [Taeniopygia guttata]
Length = 262
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PXTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|71996546|ref|NP_495308.3| Protein RSP-5, isoform d [Caenorhabditis elegans]
gi|351064338|emb|CCD72700.1| Protein RSP-5, isoform d [Caenorhabditis elegans]
Length = 208
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE-RGRHRDG 55
IS+ Y GFAFV FED RDA DA LD RL VE ARG+ RG R G
Sbjct: 31 ISMKY-GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMARGKPRGNDRHG 83
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 75 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
P RERD++R + YG + ++ ++ FAFV FE +A A D
Sbjct: 10 PYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLD 56
>gi|198421232|ref|XP_002126906.1| PREDICTED: similar to splicing factor, arginine/serine-rich 4
isoform 1 [Ciona intestinalis]
Length = 272
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 19/145 (13%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA--RGERGRH-----------RDG 55
GF FV F+D+RDA DAI L+ +R L + RG G R
Sbjct: 39 GFGFVIFDDERDADDAIHDLNGKSLCGERVMLEIAKGTPRGPGGESSSSSYYQQQQPRSS 98
Query: 56 SKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEE 112
+K + N L V N R +D+K + G V++ R RRN V+F +++E
Sbjct: 99 TKGIPNH--GYRLIVENLSS-RVTWQDLKDYMRQCGEVVYADANRYRRNEGVVEFSSRKE 155
Query: 113 ATKALESTDRSKLVDRVISVEYALK 137
A+E + +++ R I + +K
Sbjct: 156 MKYAIEKLNGTEINGRHIKLTPNIK 180
Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
R RE D++ F YG + + ++ F FV F+ + +A A+ + L + +E A
Sbjct: 15 RARENDVEHFFRGYGKINDLMLKNGFGFVIFDDERDADDAIHDLNGKSLCGERVMLEIA 73
>gi|74228775|dbj|BAE21877.1| unnamed protein product [Mus musculus]
Length = 604
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 262 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 315
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 316 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 367
>gi|340726341|ref|XP_003401518.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Bombus
terrestris]
gi|350423930|ref|XP_003493634.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Bombus
impatiens]
Length = 248
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 79/188 (42%), Gaps = 28/188 (14%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW------------ARGERGRHRDGSK 57
FAFV F+D RDA DA+ D + YD RL VE+ RG R G
Sbjct: 48 FAFVEFDDPRDAEDAVHARDG--YDYDGYRLRVEFPRGGGPSNNFRGGRGAGDSGRGGRG 105
Query: 58 SMANQRP-------TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFET 109
M+N R ++ ++ P +D+K H G+V + ++ V+F
Sbjct: 106 EMSNSRGRGPPARRSQYRVLVTGLPPSGSWQDLKDHMREAGDVCFADVYKDGTGVVEFLR 165
Query: 110 QEEATKALESTDRSKLVDRVISVEYA-LKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAY 168
E+ A++ D S+ V Y +K+D DR S R R + RS SP
Sbjct: 166 YEDMKYAVKKLDDSRFRSHEGEVAYIRVKEDHNSGDRGRSEDR---ERGRSHSRSYSP-- 220
Query: 169 RRRPSPDY 176
RRR SP Y
Sbjct: 221 RRRGSPTY 228
>gi|296207043|ref|XP_002750472.1| PREDICTED: serine/arginine-rich splicing factor 10 isoform 2
[Callithrix jacchus]
Length = 262
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|300360545|ref|NP_001177935.1| serine/arginine-rich splicing factor 10 isoform 4 [Homo sapiens]
gi|332266731|ref|XP_003282351.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Nomascus
leucogenys]
gi|397140012|ref|XP_003846473.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Homo
sapiens]
gi|426328341|ref|XP_004024961.1| PREDICTED: serine/arginine-rich splicing factor 10 [Gorilla gorilla
gorilla]
gi|14603220|gb|AAH10074.1| FUSIP1 protein [Homo sapiens]
Length = 173
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|383848005|ref|XP_003699643.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Megachile
rotundata]
Length = 248
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 79/188 (42%), Gaps = 28/188 (14%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW------------ARGERGRHRDGSK 57
FAFV F+D RDA DA+ D + YD RL VE+ RG R G
Sbjct: 48 FAFVEFDDPRDAEDAVHARDG--YDYDGYRLRVEFPRGGGPSNNFRGGRGAGDSGRGGRG 105
Query: 58 SMANQRP-------TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFET 109
M+N R ++ ++ P +D+K H G+V + ++ V+F
Sbjct: 106 EMSNSRGRGPPARRSQYRVLVTGLPPSGSWQDLKDHMREAGDVCFADVYKDGTGVVEFLR 165
Query: 110 QEEATKALESTDRSKLVDRVISVEYA-LKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAY 168
E+ A++ D S+ V Y +K+D DR S R R + RS SP
Sbjct: 166 YEDMKYAVKKLDDSRFRSHEGEVAYIRVKEDHSSGDRGRSEDR---ERGRSHSRSYSP-- 220
Query: 169 RRRPSPDY 176
RRR SP Y
Sbjct: 221 RRRGSPTY 228
>gi|126328455|ref|XP_001366091.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Monodelphis
domestica]
Length = 633
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 344 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 395
>gi|74207436|dbj|BAE30898.1| unnamed protein product [Mus musculus]
Length = 632
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 344 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 395
>gi|5031755|ref|NP_005817.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Homo sapiens]
gi|73950240|ref|XP_852945.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Canis lupus familiaris]
gi|301754932|ref|XP_002913314.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Ailuropoda melanoleuca]
gi|332244972|ref|XP_003271637.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Nomascus leucogenys]
gi|332807931|ref|XP_513191.3| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4 [Pan
troglodytes]
gi|397478943|ref|XP_003810793.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2 [Pan
paniscus]
gi|402853336|ref|XP_003891352.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Papio anubis]
gi|426328275|ref|XP_004024925.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Gorilla gorilla gorilla]
gi|12230547|sp|O43390.1|HNRPR_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein R;
Short=hnRNP R
gi|2697103|gb|AAC39540.1| heterogeneous nuclear ribonucleoprotein R [Homo sapiens]
gi|119615448|gb|EAW95042.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_c [Homo
sapiens]
gi|168277942|dbj|BAG10949.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|281351549|gb|EFB27133.1| hypothetical protein PANDA_001090 [Ailuropoda melanoleuca]
gi|380784785|gb|AFE64268.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|383408165|gb|AFH27296.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|384939486|gb|AFI33348.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|410224016|gb|JAA09227.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410262100|gb|JAA19016.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410301026|gb|JAA29113.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410350925|gb|JAA42066.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 633
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 344 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 395
>gi|417403514|gb|JAA48557.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Desmodus rotundus]
Length = 633
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 344 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 395
>gi|358400404|gb|EHK49735.1| hypothetical protein TRIATDRAFT_297628 [Trichoderma atroviride IMI
206040]
Length = 344
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATK 115
P LFV P R E ++ + FE YG V H + R F FV+ T E+A
Sbjct: 72 PGSNLFVTGIHP-RLSEAEVSKMFEKYGEVEKCQIMRDPHTKESRGFGFVKMVTSEQAEA 130
Query: 116 ALESTDRSKLVDRVISVEYA 135
A E + R +S+E A
Sbjct: 131 AREGLQGEVIEGRTMSIEKA 150
>gi|338722113|ref|XP_001501475.3| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Equus caballus]
gi|344287364|ref|XP_003415423.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Loxodonta
africana]
gi|348571199|ref|XP_003471383.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Cavia
porcellus]
Length = 633
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 344 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 395
>gi|336263150|ref|XP_003346356.1| hypothetical protein SMAC_07833 [Sordaria macrospora k-hell]
gi|380091684|emb|CCC10816.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1756
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 150 RRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPV 209
+R G + +P G PS + R+ SP Y RSPAY+ P Y+ RSPD+ +
Sbjct: 1377 QRSGSLQATPRGSPPSASGARQMSPGYENTRSPAYENTRSPAYENARSPDYQQQ------ 1430
Query: 210 YDRRRSPDY 218
Y+ RSPDY
Sbjct: 1431 YENTRSPDY 1439
>gi|301105355|ref|XP_002901761.1| ras GTPase-activating protein-binding protein, putative
[Phytophthora infestans T30-4]
gi|262099099|gb|EEY57151.1| ras GTPase-activating protein-binding protein, putative
[Phytophthora infestans T30-4]
Length = 488
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 11/90 (12%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSK 124
+LF+ + P +T E D++ F+ YG++ V + +R FAFV + QE AL T K
Sbjct: 352 SLFIRDV-PAQTSENDLRELFKSYGSIAGVSVVAQRGFAFVDYYEQESMRAALAETKELK 410
Query: 125 LVDRVISVEYALKDDSERDDRYDSPRRGGY 154
+ D+V+ V+ ER +R D +RG +
Sbjct: 411 VFDKVLQVD-------ERAERKDG-QRGSF 432
>gi|431891280|gb|ELK02157.1| Heterogeneous nuclear ribonucleoprotein R [Pteropus alecto]
Length = 633
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 344 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 395
>gi|390465455|ref|XP_002750457.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Callithrix jacchus]
gi|403287392|ref|XP_003934932.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Saimiri boliviensis boliviensis]
Length = 633
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 344 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 395
>gi|297282467|ref|XP_001111802.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 1
[Macaca mulatta]
Length = 636
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 293 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 346
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 347 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 398
>gi|295663727|ref|XP_002792416.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226279086|gb|EEH34652.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 308
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATKALE 118
LFV P R E D+ R FE YG+V H + R F FV+ T E+A A E
Sbjct: 73 NLFVTGIHP-RLTESDVSRLFEKYGDVENCSIMLDPHTKESRGFGFVKMVTAEQADAAKE 131
Query: 119 STDRSKLVDRVISVEYA 135
+ R +S+E A
Sbjct: 132 GLQGEVIEGRTLSIEKA 148
>gi|393245625|gb|EJD53135.1| RNA-binding domain-containing protein [Auricularia delicata
TFB-10046 SS5]
Length = 265
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 75 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134
P R D+++ FE YG ++ R+ F FV+FE+ ++A + ++ + + I VE+
Sbjct: 11 PTDARSEDVQKFFEGYGRIVDCRVMTGFGFVEFESSKDAEEVVQVFNGKAFMGAPILVEF 70
Query: 135 A 135
A
Sbjct: 71 A 71
>gi|449434458|ref|XP_004135013.1| PREDICTED: uncharacterized RNA-binding protein C25G10.01-like,
partial [Cucumis sativus]
Length = 238
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATK 115
P TL+V R ERD++ HF G V RI R FAFV + ++A +
Sbjct: 57 PGNTLYVTGLS-TRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVDDANR 115
Query: 116 ALESTDRSKLVDRVISVE 133
++ ++S L R I+VE
Sbjct: 116 CVKHLNQSILEGRYITVE 133
>gi|426221978|ref|XP_004005182.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Ovis aries]
Length = 633
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 344 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 395
>gi|74141008|dbj|BAE22085.1| unnamed protein product [Mus musculus]
Length = 278
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|456753306|gb|JAA74142.1| heterogeneous nuclear ribonucleoprotein R tv2 [Sus scrofa]
Length = 633
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 344 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 395
>gi|294461367|gb|ADE76245.1| unknown [Picea sitchensis]
gi|294463638|gb|ADE77346.1| unknown [Picea sitchensis]
Length = 220
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEA 113
+ P TL+V R E+D++ HF G V+ RI R F FV + E+A
Sbjct: 38 ENPGNTLYVTGLS-TRVTEKDLEEHFSGEGKVIDCRLVVEPRTRISRGFGFVTMGSLEDA 96
Query: 114 TKALESTDRSKLVDRVISVE 133
+ ++ ++S L R I+VE
Sbjct: 97 ERCIKYLNQSILEGRFITVE 116
>gi|239606902|gb|EEQ83889.1| pre-RNA splicing factor Srp2 [Ajellomyces dermatitidis ER-3]
gi|327351368|gb|EGE80225.1| RNA recognition domain-containing protein containing protein
[Ajellomyces dermatitidis ATCC 18188]
Length = 299
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 18/171 (10%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRR--RLSVEWARGERGRHRDGSKS--MANQR 63
+GF F+ +ED DA D + P G D + RL+V++ARG R + S + R
Sbjct: 43 SGFGFIEYEDAMDAKDVV------PDGTDFKGERLTVQFARGPRHKETFSGPSDRSSAPR 96
Query: 64 PTKTLFVINFDPI-RTRERDIKRHFEPYG-NVLHVRIRRNF-AFVQFETQEEATKALEST 120
P +T++ + + T +D+K G +V++ + FV+FET + A+E
Sbjct: 97 PRRTIYRMQISGLPETSWQDLKDFARQSGLDVVYSETGHDGRGFVEFETGSDLKTAVEKL 156
Query: 121 D-RSKLVDRVISVE--YALKDDSERDD-RYDSP-RRGGYGRHSPYGRSPSP 166
D R RV+ + +L+D RD R SP RRGGY + Y R +P
Sbjct: 157 DGREFKGSRVLCTQDIQSLEDRQSRDPYRSRSPGRRGGYHPYDDYDRRGAP 207
>gi|258566319|ref|XP_002583904.1| predicted protein [Uncinocarpus reesii 1704]
gi|237907605|gb|EEP82006.1| predicted protein [Uncinocarpus reesii 1704]
Length = 813
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 65/156 (41%), Gaps = 34/156 (21%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRS 123
P LFV N R +RD+ F YG + + I+ + FVQF ALE+
Sbjct: 341 PGSRLFVGNLPSERVTKRDLFHLFHKYGKLAQISIKPAYGFVQFMDATSCRNALEAEQNG 400
Query: 124 KLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSP--YGRSPSPAYRRRPSPDYGRGR- 180
+ R I +E + P+R G + P GRS +R SPD G+ R
Sbjct: 401 TIRGRKIHLEIS------------KPQRSGRNANEPSKQGRS-----KRSRSPDIGKSRE 443
Query: 181 --------SPAYDR-YNG---PVYDQRRSPDHGRHR 204
S +DR NG P+ D+R PD RHR
Sbjct: 444 VGRGARSGSERHDRNLNGKRSPIVDRRDHPD--RHR 477
>gi|197102464|ref|NP_001126631.1| heterogeneous nuclear ribonucleoprotein R [Pongo abelii]
gi|55732180|emb|CAH92794.1| hypothetical protein [Pongo abelii]
Length = 633
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 344 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 395
>gi|52140015|gb|AAU29336.1| ASF/SF2-like pre-mRNA splicing factor SRP31''' [Zea mays]
gi|413944988|gb|AFW77637.1| ASF/SF2-like pre-mRNA splicing factor SRP31 [Zea mays]
Length = 264
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 54/129 (41%), Gaps = 15/129 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG--------RHRDGSKSMA 60
GFAFV FED RDA DAI G D + +D RL VE A G RG + + A
Sbjct: 46 GFAFVEFEDARDAEDAIYGRDG--YNFDGHRLRVELAHGGRGTSSFDRSSSYSSAGQRGA 103
Query: 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKA 116
++R + V P +D+K H G+V + R + E+ A
Sbjct: 104 SKRSDYRVMVTGL-PSSASWQDLKDHMRRAGDVCFTDVYREAGATIGIADYTNYEDMKHA 162
Query: 117 LESTDRSKL 125
+ D S+
Sbjct: 163 IRKLDDSEF 171
>gi|325303176|tpg|DAA34416.1| TPA_inf: alternative splicing factor ASF/SF2 [Amblyomma variegatum]
Length = 222
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE---RGRHRDGSKSMANQRPTK 66
FAFV F+D RDA DA+ D + YD RL VE+ RG RG G R ++
Sbjct: 47 FAFVEFDDPRDAEDAVHARDG--YDYDGYRLRVEFPRGSAPGRGSMGPGRGRGPPARRSQ 104
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALEST 120
+++ P +D+K H G+V + + ++ F+++E + A K L+ +
Sbjct: 105 YRVLVSGLPPSGSWQDLKDHMREAGDVCYADVFKDGTGVVEFLRYEDMKYAVKKLDDS 162
>gi|261194216|ref|XP_002623513.1| pre-RNA splicing factor Srp2 [Ajellomyces dermatitidis SLH14081]
gi|239588527|gb|EEQ71170.1| pre-RNA splicing factor Srp2 [Ajellomyces dermatitidis SLH14081]
Length = 258
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 18/171 (10%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRR--RLSVEWARGERGRHRDGSKS--MANQR 63
+GF F+ +ED DA D + P G D + RL+V++ARG R + S + R
Sbjct: 2 SGFGFIEYEDAMDAKDVV------PDGTDFKGERLTVQFARGPRHKETFSGPSDRSSAPR 55
Query: 64 PTKTLFVINFDPI-RTRERDIKRHFEPYG-NVLHVRIRRNF-AFVQFETQEEATKALEST 120
P +T++ + + T +D+K G +V++ + FV+FET + A+E
Sbjct: 56 PRRTIYRMQISGLPETSWQDLKDFARQSGLDVVYSETGHDGRGFVEFETGSDLKTAVEKL 115
Query: 121 D-RSKLVDRVISVE--YALKDDSERDD-RYDSP-RRGGYGRHSPYGRSPSP 166
D R RV+ + +L+D RD R SP RRGGY + Y R +P
Sbjct: 116 DGREFKGSRVLCTQDIQSLEDRQSRDPYRSRSPGRRGGYHPYDDYDRRGAP 166
>gi|129277529|ref|NP_001076077.1| heterogeneous nuclear ribonucleoprotein R [Bos taurus]
gi|126717461|gb|AAI33300.1| HNRNPR protein [Bos taurus]
gi|296489987|tpg|DAA32100.1| TPA: heterogeneous nuclear ribonucleoprotein R [Bos taurus]
gi|440897846|gb|ELR49456.1| Heterogeneous nuclear ribonucleoprotein R [Bos grunniens mutus]
Length = 633
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 344 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 395
>gi|46110044|ref|XP_382080.1| hypothetical protein FG01904.1 [Gibberella zeae PH-1]
Length = 342
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATK 115
P LFV P + E ++ + FE YG+V H + R F FV+ T ++A
Sbjct: 72 PGSNLFVTGIHP-KLSEAEVSKMFEKYGDVEKCQIMRDPHTKESRGFGFVKMVTSDQAEA 130
Query: 116 ALESTDRSKLVDRVISVEYA 135
A E ++ R +S+E A
Sbjct: 131 AKEGLQGEQIEGRTLSIEKA 150
>gi|241159531|ref|XP_002408582.1| alternative splicing factor ASF/SF2, putative [Ixodes scapularis]
gi|215494365|gb|EEC04006.1| alternative splicing factor ASF/SF2, putative [Ixodes scapularis]
Length = 339
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 65 TKTLFV--INFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDR 122
T +FV +N+D RERD+++ F+ YG + V ++ + FV+F+ +A A+ +
Sbjct: 2 TTRVFVGRLNYD---VRERDLEKFFKGYGRIGEVLLKNGYGFVEFDDYRDAEDAVHDLNG 58
Query: 123 SKLVDRVISVEYA 135
KL+ ISVE A
Sbjct: 59 KKLMGERISVELA 71
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 13/123 (10%)
Query: 5 LHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR- 63
L G+ FV F+D RDA DA+ L+ + R+SVE ARG R G ++ R
Sbjct: 33 LLKNGYGFVEFDDYRDAEDAVHDLNGKKLMGE--RISVELARGIRRGPGTGYGGASSSRR 90
Query: 64 ---PTKT---LFVINFDPIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEAT 114
P++T L V N +D+K G V + ++RRN V+F T +
Sbjct: 91 YGPPSRTEYQLLVENLSS-SVSWQDLKDFMRQAGEVTYTDAHKLRRNEGVVEFATYSDMK 149
Query: 115 KAL 117
AL
Sbjct: 150 NAL 152
>gi|189053709|dbj|BAG35961.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 344 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 395
>gi|159479638|ref|XP_001697897.1| U1 small nuclear ribonucleoprotein [Chlamydomonas reinhardtii]
gi|158273995|gb|EDO99780.1| U1 small nuclear ribonucleoprotein [Chlamydomonas reinhardtii]
Length = 394
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 21/121 (17%)
Query: 64 PTKTLFV--INFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEAT 114
P KT+ V ++FD E+ ++R FE YG V VR+ R +AFV++E + +
Sbjct: 149 PYKTILVARLSFD---VTEKKLRREFEEYGPVKRVRLVMDKNGKSRGYAFVEYEHKADMK 205
Query: 115 KALESTDRSKLVDRVISVEYALKDDSERDDRYDS--PRRGGYGRHSPYGRSPSPAYRRRP 172
+A ++ D K+ R + V D ER ++ PRR G G +P GR P R++P
Sbjct: 206 EAYKAADGKKIEGRRVLV------DVERGRTVENWKPRRLGGGLGAP-GREPKAPKRQKP 258
Query: 173 S 173
Sbjct: 259 G 259
>gi|156151394|ref|NP_001095868.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Homo sapiens]
gi|12655185|gb|AAH01449.1| HNRPR protein [Homo sapiens]
gi|123982706|gb|ABM83094.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|123997373|gb|ABM86288.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|383408163|gb|AFH27295.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
gi|384939484|gb|AFI33347.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
gi|410262102|gb|JAA19017.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410301028|gb|JAA29114.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410350927|gb|JAA42067.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 636
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 293 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 346
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 347 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 398
>gi|395521675|ref|XP_003764941.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Sarcophilus
harrisii]
Length = 563
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 344 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 395
>gi|149062249|gb|EDM12672.1| rCG47908 [Rattus norvegicus]
Length = 406
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 189 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 242
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 243 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 294
>gi|346471975|gb|AEO35832.1| hypothetical protein [Amblyomma maculatum]
Length = 223
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE---RGRHRDGSKSMANQRPTK 66
FAFV F+D RDA DA+ D + YD RL VE+ RG RG G R ++
Sbjct: 47 FAFVEFDDPRDAEDAVHARDG--YDYDGYRLRVEFPRGSAPGRGSMGPGRGRGPPARRSQ 104
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALEST 120
+++ P +D+K H G+V + + ++ F+++E + A K L+ +
Sbjct: 105 YRVLVSGLPPSGSWQDLKDHMREAGDVCYADVFKDGTGVVEFLRYEDMKYAVKKLDDS 162
>gi|225690511|ref|NP_001070120.2| nucleolin [Danio rerio]
Length = 705
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+AFV FE+ D+ +A+ +N + R + +E+++ +R G N PTKTL
Sbjct: 502 GYAFVEFENVEDSKEALENCNNTDI--EGRSIRLEYSQNDR---ERGGGGRGNSGPTKTL 556
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALEST 120
FV T ++ +K F+ + RI + F FV F+ +++ A E+
Sbjct: 557 FVKGLSD-DTTDQTLKDSFD---GAIAARIATDRDTGSSKGFGFVDFDNEQDCKAAKEAM 612
Query: 121 DRSKLVDRVISVEYA 135
D ++ ++++YA
Sbjct: 613 DDGEIDGNKVTLDYA 627
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 29/156 (18%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
F +V F + + A+ + ++L + + ++ R ++ S+ +R +TLF
Sbjct: 329 FGYVDFASEEELQKALE--------LNGKKLLGQPVKLDKARSKENSQENKKERDARTLF 380
Query: 70 VINFDPIRTRERDIKRHFE-------PYGNVLHVRIRRNFAFVQFETQEEATKALESTDR 122
V N P + D++ F+ P GN R A+++F+T+ A KALE
Sbjct: 381 VKNL-PYSITQDDLREIFDQAVDIRVPMGNT---GTSRGIAYIEFKTEAIAEKALEEAQG 436
Query: 123 SKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHS 158
S + R I V++ D R+GG G S
Sbjct: 437 SDVQGRSIIVDFT----------GDKSRQGGRGAPS 462
>gi|237836905|ref|XP_002367750.1| U1 small nuclear ribonucleoprotein, putative [Toxoplasma gondii
ME49]
gi|211965414|gb|EEB00610.1| U1 small nuclear ribonucleoprotein, putative [Toxoplasma gondii
ME49]
gi|221482025|gb|EEE20391.1| U1 small nuclear ribonucleoprotein 70 kD, putative [Toxoplasma
gondii GT1]
gi|221505100|gb|EEE30754.1| RNA-binding protein, putative [Toxoplasma gondii VEG]
Length = 274
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 20/114 (17%)
Query: 64 PTKTLFV--INFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEAT 114
P +TLFV I++D T E+ +KR FE YG++ VR+ R + F++FE +
Sbjct: 96 PFRTLFVGGISYD---TTEKKLKREFEQYGSIKRVRLIYDRNGKPRGYGFIEFENDRDMK 152
Query: 115 KALESTDRSKLVDRVISVEYALKDDSERDDRYDS--PRRGGYGRHSPYGRSPSP 166
+A ++ D K+ R + V D ER PRR G GR P G + P
Sbjct: 153 EAYKNADGKKIDGRRVLV------DVERARTVPGWLPRRLGGGRGKPRGSNTKP 200
>gi|190339446|gb|AAI62643.1| Zgc:152810 protein [Danio rerio]
Length = 708
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+AFV FE+ D+ +A+ +N + R + +E+++ +R G N PTKTL
Sbjct: 505 GYAFVEFENVEDSKEALENCNNTDI--EGRSIRLEYSQNDR---ERGGGGRGNSGPTKTL 559
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALEST 120
FV T ++ +K F+ + RI + F FV F+ +++ A E+
Sbjct: 560 FVKGLSD-DTTDQTLKDSFD---GAIAARIATDRDTGSSKGFGFVDFDNEQDCKAAKEAM 615
Query: 121 DRSKLVDRVISVEYA 135
D ++ ++++YA
Sbjct: 616 DDGEIDGNKVTLDYA 630
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 29/156 (18%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
F +V F + + A+ + ++L + + ++ R ++ S+ +R +TLF
Sbjct: 332 FGYVDFASEEELQKALE--------LNGKKLLGQPVKLDKARSKENSQENKKERDARTLF 383
Query: 70 VINFDPIRTRERDIKRHFE-------PYGNVLHVRIRRNFAFVQFETQEEATKALESTDR 122
V N P + D++ F+ P GN R A+++F+T+ A KALE
Sbjct: 384 VKNL-PYSITQDDLREIFDQAVDIRVPMGNT---GTSRGIAYIEFKTEAIAEKALEEAQG 439
Query: 123 SKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHS 158
S + R I V++ D R+GG G S
Sbjct: 440 SDVQGRSIIVDFT----------GDKSRQGGRGAPS 465
>gi|115313778|gb|AAI24136.1| Zgc:152810 [Danio rerio]
Length = 704
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+AFV FE+ D+ +A+ +N + R + +E+++ +R G N PTKTL
Sbjct: 501 GYAFVEFENVEDSKEALENCNNTDI--EGRSIRLEYSQNDR---ERGGGGRGNSGPTKTL 555
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALEST 120
FV T ++ +K F+ + RI + F FV F+ +++ A E+
Sbjct: 556 FVKGLSD-DTTDQTLKDSFD---GAIAARIATDRDTGSSKGFGFVDFDNEQDCKAAKEAM 611
Query: 121 DRSKLVDRVISVEYA 135
D ++ ++++YA
Sbjct: 612 DDGEIDGNKVTLDYA 626
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 29/156 (18%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
F +V F + + A+ + ++L + + ++ R ++ S+ +R +TLF
Sbjct: 328 FGYVDFASEEELQKALE--------LNGKKLLGQPVKLDKARSKENSQENKKERDARTLF 379
Query: 70 VINFDPIRTRERDIKRHFE-------PYGNVLHVRIRRNFAFVQFETQEEATKALESTDR 122
V N P + D++ F+ P GN R A+++F+T+ A KALE
Sbjct: 380 VKNL-PYSITQDDLREIFDQAVDIRVPMGNT---GTSRGIAYIEFKTEAIAEKALEEAQG 435
Query: 123 SKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHS 158
S + R I V++ D R+GG G S
Sbjct: 436 SDVQGRSIIVDFT----------GDKSRQGGRGAPS 461
>gi|74194838|dbj|BAE26010.1| unnamed protein product [Mus musculus]
Length = 632
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 344 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 395
>gi|398390533|ref|XP_003848727.1| hypothetical protein MYCGRDRAFT_111161 [Zymoseptoria tritici
IPO323]
gi|339468602|gb|EGP83703.1| hypothetical protein MYCGRDRAFT_111161 [Zymoseptoria tritici
IPO323]
Length = 866
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFV N + +RDI F YG++ V I++ + FVQF E+ +AL ++ D
Sbjct: 384 LFVGNLSSEKVTKRDIYHVFHNYGDLAQVSIKQAYGFVQFLRPEDCARALSGEQGRQIRD 443
Query: 128 RVISVEYALKDDSERDDR 145
+ I +E + + R+ +
Sbjct: 444 KKIHLEVSKPQKAPRNQQ 461
>gi|326477886|gb|EGE01896.1| RNA-binding protein Nab3 [Trichophyton equinum CBS 127.97]
Length = 930
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LF+ N R +RD+ F +G + + I++ + F+QF + KAL++ S +
Sbjct: 449 LFIGNLPTERVTKRDLFHIFHMHGKLAQISIKQAYGFIQFLEPDSCRKALQAQQGSTIRG 508
Query: 128 RVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRY 187
R I +E + +R R P GR RSP R P P GR + YDR
Sbjct: 509 RKIHLEIS---KPQRGARNSGPTENS-GRKQRRSRSPEYERNREPPPRGGRSAADRYDRG 564
Query: 188 NG 189
G
Sbjct: 565 PG 566
>gi|449491291|ref|XP_004158852.1| PREDICTED: uncharacterized LOC101219220 [Cucumis sativus]
Length = 244
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATK 115
P TL+V R ERD++ HF G V RI R FAFV + ++A +
Sbjct: 63 PGNTLYVTGLS-TRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVDDANR 121
Query: 116 ALESTDRSKLVDRVISVE 133
++ ++S L R I+VE
Sbjct: 122 CVKHLNQSILEGRYITVE 139
>gi|390473557|ref|XP_003734621.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Callithrix
jacchus]
Length = 262
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ANDTRSEDLRREFGRYGPIVDVYVPPDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R + +++A D
Sbjct: 67 ALRNLDRKWICGRQMEIQFAQGD 89
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49
GFA+V FED RDA DA+R LD R++ +++A+G+R
Sbjct: 52 GFAYVQFEDVRDAEDALRNLDRKWIC--GRQMEIQFAQGDR 90
>gi|33859724|ref|NP_083147.1| heterogeneous nuclear ribonucleoprotein R [Mus musculus]
gi|17066599|gb|AAL35332.1|AF441128_1 heterogeneous nuclear ribonucleoprotein R [Mus musculus]
gi|23273731|gb|AAH38051.1| Heterogeneous nuclear ribonucleoprotein R [Mus musculus]
Length = 632
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 344 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 395
>gi|62990189|ref|NP_783193.2| heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
gi|62471548|gb|AAH93598.1| Heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
Length = 632
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 344 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 395
>gi|84998374|ref|XP_953908.1| splicing factor (SR protein) [Theileria annulata]
gi|65304906|emb|CAI73231.1| splicing factor (SR protein), putative [Theileria annulata]
Length = 341
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 13/131 (9%)
Query: 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG--------RHRDGSK 57
+Y +AF+ F R A DA+ D + YDR RL VE+A GE+ R RD +
Sbjct: 51 NYTSYAFIEFASVRSAEDAVDSRDG--YEYDRYRLRVEFA-GEKKPRRYPSYDRPRDRDR 107
Query: 58 SMANQRPTKTLF--VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATK 115
S PT+T + VI+ P R + +K H G V +V I FV + + +
Sbjct: 108 SNRYPPPTRTDYRLVISNLPHGCRWQHLKDHMRKAGPVGYVNIVHGKGFVDYMHKSDMKY 167
Query: 116 ALESTDRSKLV 126
A+ D S+L
Sbjct: 168 AIRKLDGSELT 178
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR-------NFAFVQFETQEE 112
AN+ P+ +FV N P R ERDI F+ +G + V I+ ++AF++F +
Sbjct: 8 ANRSPS-CVFVGNL-PDRVDERDIHDLFDKFGEIKDVDIKHGKTSNYTSYAFIEFASVRS 65
Query: 113 ATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPR 150
A A++S D + + VE+A + R YD PR
Sbjct: 66 AEDAVDSRDGYEYDRYRLRVEFAGEKKPRRYPSYDRPR 103
>gi|395821027|ref|XP_003783851.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Otolemur garnettii]
Length = 633
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 344 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 395
>gi|354483012|ref|XP_003503689.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Cricetulus griseus]
gi|344256125|gb|EGW12229.1| Heterogeneous nuclear ribonucleoprotein R [Cricetulus griseus]
Length = 633
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 344 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 395
>gi|291400295|ref|XP_002716399.1| PREDICTED: splicing factor, arginine/serine-rich 10 [Oryctolagus
cuniculus]
Length = 240
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 55 GSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQ 106
G ++ AN P L V + T ERD++ F YG + V I R FAFV
Sbjct: 59 GYRTQANPDPNCCLGVFGLS-LYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVY 117
Query: 107 FETQEEATKALESTDRSKLVDRVISVEYAL 136
FE ++A +A E + +L R I V++++
Sbjct: 118 FENVDDAKEAKERANGMELDGRRIRVDFSI 147
>gi|357121520|ref|XP_003562467.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Brachypodium
distachyon]
Length = 288
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 55/136 (40%), Gaps = 25/136 (18%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN------- 61
GFAFV FED RDA DAI G D + +D RL VE A G R S S+ N
Sbjct: 46 GFAFVEFEDPRDAEDAIHGRDG--YNFDGNRLRVELAHGGRAN----SSSLPNSYGGGGG 99
Query: 62 --------QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR----NFAFVQFET 109
R T+ ++ P +D+K H G+V + R V +
Sbjct: 100 GGGRRGGVSRHTEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSEVYREGDGTTGIVDYTN 159
Query: 110 QEEATKALESTDRSKL 125
++ A+ D S+
Sbjct: 160 YDDMKYAIRKLDDSEF 175
>gi|27903509|gb|AAO24773.1| heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
Length = 632
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 344 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 395
>gi|452001822|gb|EMD94281.1| hypothetical protein COCHEDRAFT_1094167 [Cochliobolus
heterostrophus C5]
Length = 501
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATK 115
P+ TLF+ N T E I+ F YGNV V + + F +V F +QEEAT
Sbjct: 346 PSNTLFIGNLSFDCTNET-IQEVFAEYGNVTRVSLPTDRDSGALKGFGYVDFGSQEEATA 404
Query: 116 ALESTDRSKLVDRVISVEYA 135
ALE+ + R + V++A
Sbjct: 405 ALEALQGQDVAGRPLRVDFA 424
>gi|308459677|ref|XP_003092154.1| hypothetical protein CRE_20061 [Caenorhabditis remanei]
gi|308254084|gb|EFO98036.1| hypothetical protein CRE_20061 [Caenorhabditis remanei]
Length = 336
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 13/142 (9%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHR-------DGSKSMAN 61
FAF+ F+D RDA +A+R D + +D +RL VE+ RG+ R +GS+ N
Sbjct: 44 AFAFIQFDDRRDAKEAVRACDG--YEFDGKRLRVEFPRGKGPRGPGGRPTRDNGSRFGRN 101
Query: 62 QRPTKTL---FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALE 118
P K ++ P +DIK H + G + + + V+FE E A+
Sbjct: 102 GGPPKRSNYRLIVEGLPRSGSWQDIKDHLKQAGEICYANVHNGEGVVEFERYENLEYAIR 161
Query: 119 STDRSKLVDRVISVEYA-LKDD 139
D +K Y LK+D
Sbjct: 162 KYDDTKFRSHKGETAYIRLKED 183
Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR------NFAFVQFETQEEATKALEST 120
T++V N P RE++I+ F YG + ++ I+ FAF+QF+ + +A +A+ +
Sbjct: 5 TVYVGNL-PSDVREKEIEDIFHKYGEIRNIDIKSRSRDSPAFAFIQFDDRRDAKEAVRAC 63
Query: 121 DRSKLVDRVISVEY 134
D + + + VE+
Sbjct: 64 DGYEFDGKRLRVEF 77
>gi|115400081|ref|XP_001215629.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114191295|gb|EAU32995.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 306
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATKALES 119
LFV P R E DI R FE YG+V H + R F FV+ T E+A A E
Sbjct: 57 LFVTGIHP-RLTEADISRLFEKYGDVENCSIMVDPHTKESRGFGFVKMVTAEQADAAKEG 115
Query: 120 TDRSKLVDRVISVEYA 135
+ R +S+E A
Sbjct: 116 LQGEVIEGRTLSIEKA 131
>gi|66548276|ref|XP_393525.2| PREDICTED: serine/arginine-rich splicing factor 1-like [Apis
mellifera]
Length = 248
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 79/188 (42%), Gaps = 28/188 (14%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW------------ARGERGRHRDGSK 57
FAFV F+D RDA DA+ D + YD RL VE+ RG R G
Sbjct: 48 FAFVEFDDPRDAEDAVHARDG--YDYDGYRLRVEFPRGGGPSNNFRGGRGAGDSGRGGRG 105
Query: 58 SMANQRP-------TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFET 109
M+N R ++ ++ P +D+K H G+V + ++ V+F
Sbjct: 106 EMSNSRGRGPPARRSQYRVLVTGLPPSGSWQDLKDHMREAGDVCFADVFKDGTGVVEFLR 165
Query: 110 QEEATKALESTDRSKLVDRVISVEYA-LKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAY 168
E+ A++ D S+ V Y +K+D DR S R R + RS SP
Sbjct: 166 YEDMKYAVKKLDDSRFRSHEGEVAYIRVKEDHNSGDRGRSEDR---ERGRSHSRSYSP-- 220
Query: 169 RRRPSPDY 176
RRR SP Y
Sbjct: 221 RRRGSPTY 228
>gi|365758792|gb|EHN00619.1| Nop13p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 400
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 103/230 (44%), Gaps = 40/230 (17%)
Query: 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGY-DRRRLSVEWARGERGR-HRDGSKSMAN 61
S+ GF +++F++ + ++ + + + + R + ++ + GR +D +M+
Sbjct: 176 SMKNKGFCYMFFKN----VEQMKAVLELSESHLNGRNMLIKDSENYSGRPDKDDLVAMSK 231
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEA 113
P++ LFV N T + +++HF+ G+V+ +R+ + FAF+ F+ +E +
Sbjct: 232 NPPSRILFVGNLSFDVTDDL-LRKHFQHCGDVVKIRMATFEDSGKCKGFAFIDFKNEEGS 290
Query: 114 TKALESTDRSKLVDRVISVEYALKDDSERDDR-------YDSPRRGGYGRHSPYGRSPSP 166
T AL+ K+ R + +EY +D S+R R +D PR +
Sbjct: 291 TNALKDKSCRKIAGRPLRMEYG-EDRSKRQVRKKVENVTHDKPRSFDISDN--------- 340
Query: 167 AYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSP--DHGRHRSPVPVYDRRR 214
RR SP G P Y R N RR P + R +S V + +R
Sbjct: 341 --RRYDSPRQDSGNKPEYKRSNA----NRRPPVDSNNRTKSSVALATAQR 384
>gi|298710995|emb|CBJ32302.1| arginine/serine-rich splicing factor 6 [Ectocarpus siliculosus]
Length = 235
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 11/128 (8%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAF+ FED RDA DA+ +D F D R+ V+ RG HR A +R +
Sbjct: 37 GFAFIEFEDRRDAEDAVAEMDGREF--DGARIVVQPGRG----HRPNGPKFATRRTEHRI 90
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLH----VRIRRNFAFVQFETQEEATKALESTDRSK 124
V D T +D+K G VL+ R R + V++ ++++ A+ + D ++
Sbjct: 91 TVEGLDS-HTSWQDLKDFGRQAGQVLYSDVFFRQGRRWGVVEYVSRDDMKAAIRTLDDTR 149
Query: 125 LVDRVISV 132
L + I V
Sbjct: 150 LGGKYIRV 157
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
T +++ + P TR+RD+ R F YG + + +R FAF++FE + +A A+ D
Sbjct: 2 TNRIYIGHLSP-HTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAEDAVAEMD 57
>gi|302834547|ref|XP_002948836.1| hypothetical protein VOLCADRAFT_120666 [Volvox carteri f.
nagariensis]
gi|300266027|gb|EFJ50216.1| hypothetical protein VOLCADRAFT_120666 [Volvox carteri f.
nagariensis]
Length = 262
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 52 HRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--------FA 103
+RD ++ P +L V N P+ R D++ FE YG + V I R+ F
Sbjct: 3 YRDRGGGGGSRAPRVSLVVRNL-PLDIRAEDLRSKFEKYGELKDVYIPRDYYTQRPRGFG 61
Query: 104 FVQFETQEEATKALESTDRSKLVDRVISVEYA 135
FV+F+ +A A+ S DRS + R ISV ++
Sbjct: 62 FVEFKDTRDAEDAMYSLDRSTINGREISVTFS 93
>gi|388858649|emb|CCF48487.1| related to Transformer-2 protein homolog [Ustilago hordei]
Length = 346
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 55 GSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNV--------LHVRIRRNFAFVQ 106
G + + P L V RT +RD++ F YG + H R R FAFV
Sbjct: 65 GGRDAGDNNPGNNLHVSGLS-NRTTDRDLEDAFGKYGAIERAQVMYDPHSREPRGFAFVT 123
Query: 107 FETQEEATKALESTDRSKLVDRVISVEYA 135
F E+A A+ + + ++ + R I+V+ A
Sbjct: 124 FVKAEDAEAAITAMNGTEFLGRKITVDKA 152
>gi|327297170|ref|XP_003233279.1| hypothetical protein TERG_06272 [Trichophyton rubrum CBS 118892]
gi|326464585|gb|EGD90038.1| hypothetical protein TERG_06272 [Trichophyton rubrum CBS 118892]
Length = 301
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 9/99 (9%)
Query: 45 ARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HV 96
A G R ++ Q LFV P R E D+ R FE YG V H
Sbjct: 46 AEGTDTRMKNADDEEGAQNTGTNLFVTGIHP-RLSEADVTRLFEKYGEVENCSIMLDPHT 104
Query: 97 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
+ R F FV T ++A A E + R +S+E A
Sbjct: 105 KESRGFGFVNMATPDQAEAAREGLQGEVIDGRTLSIEKA 143
>gi|348517719|ref|XP_003446380.1| PREDICTED: serine/arginine-rich splicing factor 5-like [Oreochromis
niloticus]
Length = 293
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ P RE+D++R F+ YG + + ++R F FV+F+ +A A+ D +L +
Sbjct: 6 IFIGRLSP-SAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDAEDAVYELDGKELCN 64
Query: 128 RVISVEYA 135
+++E+A
Sbjct: 65 ERVTIEHA 72
>gi|326473044|gb|EGD97053.1| hypothetical protein TESG_04474 [Trichophyton tonsurans CBS 112818]
Length = 930
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LF+ N R +RD+ F +G + + I++ + F+QF + KAL++ S +
Sbjct: 449 LFIGNLPTERVTKRDLFHIFHMHGKLAQISIKQAYGFIQFLEPDSCRKALQAQQGSTIRG 508
Query: 128 RVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRY 187
R I +E + +R R P GR RSP R P P GR + YDR
Sbjct: 509 RKIHLEIS---KPQRGARNSGPTENS-GRKQRRSRSPEYERNREPPPRGGRSAADRYDRG 564
Query: 188 NG 189
G
Sbjct: 565 PG 566
>gi|426236979|ref|XP_004023550.1| PREDICTED: LOW QUALITY PROTEIN: serine/arginine-rich splicing
factor 1 [Ovis aries]
Length = 190
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
FAFV FED RDA DA+ G D + YD RL VE+ R RG R G ++R +
Sbjct: 56 FAFVEFEDPRDAEDAVYGRDG--YDYDGYRLRVEFPRSGRGTGRRGRYGPPSRRSENRVV 113
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 125
V P + + D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 114 VSGLPPSGSWQ-DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 169
>gi|426224259|ref|XP_004006291.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Ovis
aries]
Length = 262
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG V+ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRYGDLRREFGRYGPVVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|448878368|gb|AGE46147.1| arginine/serine-rich splicing factor SR30 transcript VI [Sorghum
bicolor]
Length = 237
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG--------RHRDGSKSMA 60
GFAFV FED DA DAI G D + +D RL VE A G RG + + A
Sbjct: 46 GFAFVEFEDPHDAEDAIYGRDG--YNFDGHRLRVELAHGGRGPSSFDRSSSYSSAGQRGA 103
Query: 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKA 116
++R + V P +D+K H G+V + R + E+ A
Sbjct: 104 SKRSDYRVMVTGL-PSSASWQDLKDHMRRAGDVCFTDVYREAGATIGIADYTNYEDMKHA 162
Query: 117 LESTDRSKL 125
+ D S+
Sbjct: 163 IRKLDDSEF 171
>gi|194386914|dbj|BAG59823.1| unnamed protein product [Homo sapiens]
Length = 595
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 252 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 305
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 306 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 357
>gi|401623907|gb|EJS41986.1| nop13p [Saccharomyces arboricola H-6]
Length = 401
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 96/218 (44%), Gaps = 38/218 (17%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGY-DRRRLSVEWARGERGR-HRDGSKSMANQRPTK 66
GF +++F++ + ++ + + + + R + ++ + GR +D +M+ P++
Sbjct: 182 GFCYMFFKN----VEQMKAVLELSESHLNGRNMLIKDSENYAGRPDKDDFVAMSKNPPSR 237
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALE 118
LFV N T + +K+HF+ G+++ +R+ + FAF+ F+ +E +T AL+
Sbjct: 238 ILFVGNLSFDVTDDL-LKKHFQHCGDIIKIRMATFEDSGKCKGFAFIDFKNEEGSTNALK 296
Query: 119 STDRSKLVDRVISVEYALKDDSERDDR-------YDSPRRGGYGRHSPYGRSPSPAYRRR 171
K+ R + +EY +D S+R R +D PR + Y R
Sbjct: 297 DKSCRKIAGRPLRMEYG-EDRSKRQVRKKVENVTHDKPRSFDISNNRDYDR--------- 346
Query: 172 PSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPV 209
P G P Y R N RR P +R+ V
Sbjct: 347 --PRQDSGNKPEYKRSNA----NRRPPVDSNNRTKSSV 378
>gi|221057011|ref|XP_002259643.1| Splicing factor [Plasmodium knowlesi strain H]
gi|193809715|emb|CAQ40417.1| Splicing factor, putative [Plasmodium knowlesi strain H]
Length = 312
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRH---RDGSKSMANQRP 64
A FAF+ FED RDAADAI+ D +G ++ R+ V + + G++ R
Sbjct: 46 AAFAFIEFEDARDAADAIKEKDGSDYGGNKLRVEVPFNARDNGKYGPRGGRGMMGRGMRS 105
Query: 65 TKTLFVINFD--PIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTD 121
+ +V+ P+ +D+K H G H + +N V F +E+ +A+E +
Sbjct: 106 RRGRYVVEVSGLPLSGSWQDLKDHLREAGECGHADVFKNGIGEVSFFHKEDMLEAIEKFN 165
Query: 122 RSKL 125
S
Sbjct: 166 GSTF 169
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 59 MANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-----FAFVQFETQEEA 113
M+ ++V N P RD++ F YGN+L +++ FAF++FE +A
Sbjct: 1 MSMSESISRIYVGNL-PSHVSPRDVENEFRKYGNILKCDVKKTVSGAAFAFIEFEDARDA 59
Query: 114 TKALESTDRS 123
A++ D S
Sbjct: 60 ADAIKEKDGS 69
>gi|356561166|ref|XP_003548856.1| PREDICTED: uncharacterized protein LOC100819035 [Glycine max]
Length = 953
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 17/129 (13%)
Query: 9 GFAFVYFEDDRDAADAIRGLD--NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK 66
GFAF+ F DA A + L ++ FG+ R V +A H + MA K
Sbjct: 583 GFAFLEFSCHADAMLAFKRLQKPDVIFGHAERTAKVAFA---EPIHEPDPEIMAQ---VK 636
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALE 118
++F IN P E ++ F+ YG ++ + + RN + FV F T E A ++
Sbjct: 637 SVF-INGLPPHWDEDHVRELFKAYGEIVRIVLARNMSSAKRKDYGFVDFSTHEAAVACVD 695
Query: 119 STDRSKLVD 127
++S+L D
Sbjct: 696 GVNKSELGD 704
Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 12/72 (16%)
Query: 57 KSMANQRPTK---TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--------FAFV 105
+++ANQR K +FV D T E D+++ F+ G ++ VR+ +N +AFV
Sbjct: 446 EAIANQRKIKKEHEIFVGGLDRDATEE-DLRKVFQRIGEIVEVRLHKNSSTNKNKGYAFV 504
Query: 106 QFETQEEATKAL 117
+F +E A KAL
Sbjct: 505 KFANKENAKKAL 516
>gi|340371197|ref|XP_003384132.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Amphimedon
queenslandica]
Length = 242
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 19/132 (14%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE---------------RGRHRD 54
FAF+ FED RDA DAIRG D + +D +L VE R G RD
Sbjct: 48 FAFIEFEDPRDADDAIRGRDG--YMFDGYKLRVELPRSSPRYVGGRGGGGRGYYGGGRRD 105
Query: 55 GSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEA 113
G ++ L + P + + DIK HF G+V++ + R+ V+F E A
Sbjct: 106 GYGRGGGRQSGHKLMITGLPPTGSWQ-DIKDHFRQAGDVIYANVERDGTGVVEFARYEHA 164
Query: 114 TKALESTDRSKL 125
+A+ D SK
Sbjct: 165 KRAVRDLDDSKF 176
>gi|218196647|gb|EEC79074.1| hypothetical protein OsI_19658 [Oryza sativa Indica Group]
Length = 328
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 55/128 (42%), Gaps = 14/128 (10%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRD-------GSKSMAN 61
G+AFV FED RDA DAI G + + +D RL VE A G RG D + A
Sbjct: 69 GYAFVEFEDPRDAQDAIYGRNG--YDFDGHRLRVELAHGGRGPSFDRSSSYSSAGRRGAA 126
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKAL 117
+R + V P +D+K H G+V + R V + E+ +A+
Sbjct: 127 KRTDYRVMVTGL-PSSASWQDLKDHMRRAGDVCFSDVYREGGATIGIVDYTNYEDMKQAI 185
Query: 118 ESTDRSKL 125
D S+
Sbjct: 186 RKLDDSEF 193
>gi|226492692|ref|NP_001144988.1| uncharacterized protein LOC100278143 [Zea mays]
gi|195649537|gb|ACG44236.1| hypothetical protein [Zea mays]
Length = 436
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 82/197 (41%), Gaps = 14/197 (7%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR---GERGRHRDGSKSMANQRPT 65
G+ FV F DD + A+ ++ + R+ R G G + ++S
Sbjct: 242 GYGFVRFGDDSEKTQAMTEMNGVYCSSRPMRIGPATPRKSSGTSGSNGSAARSDGGDLTN 301
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVR--IRRNFAFVQFETQEEATKALESTDRS 123
T+FV DP E D+++ F YG + V+ I + FVQF ++ A AL+ + S
Sbjct: 302 TTVFVGGLDP-NVSEEDLRQTFSQYGEISSVKIPIGKQCGFVQFAQRKNAEDALQGLNGS 360
Query: 124 KLVDRVISVEYA--LKDDSERDDRYDSPRRGGYGRHSP--YGRSPSPAYRRRPSPDYGRG 179
+ + + + + + R D + GG +P Y PA P PD G
Sbjct: 361 TIGKQNVRLSWGRNPANKQFRGDNGNQWNNGGMYYAAPPFYNGYGYPA--AAPFPDPGMY 418
Query: 180 RSPAYDRYNGPVYDQRR 196
+PAY Y P Y ++
Sbjct: 419 AAPAYGAY--PFYGNQQ 433
>gi|328871249|gb|EGG19620.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 299
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
++V F RT E+D++ F+ +G +L + ++ FAFV+F+ ++ A +A++ D K VD
Sbjct: 62 IYVGKFSS-RTGEKDLEETFKKFGKILSLDMKAGFAFVEFDNEKSANQAIDEMD-GKEVD 119
Query: 128 --RVISVEYALKDDSERDDRYDSPRRGGYGRHSP 159
++I + D+ Y RG + R+ P
Sbjct: 120 GEKLIVQKSHGGRKRSSDECYLCRGRGHWARNCP 153
>gi|359490737|ref|XP_003634148.1| PREDICTED: pre-mRNA-splicing factor SF2-like isoform 1 [Vitis
vinifera]
gi|359490739|ref|XP_003634149.1| PREDICTED: pre-mRNA-splicing factor SF2-like isoform 2 [Vitis
vinifera]
gi|302143975|emb|CBI23080.3| unnamed protein product [Vitis vinifera]
Length = 250
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 16/130 (12%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL- 68
+ FV FE+ RDA DAIRG D + +D RL VE A G RG+ + +
Sbjct: 47 YCFVEFENSRDAEDAIRGRDG--YNFDGCRLRVELAHGGRGQSSSSDRRGGHGSGGGGRF 104
Query: 69 ---------FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATK 115
++ P +D+K H G+V + R+ F V + E+
Sbjct: 105 GVSRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDADGTFGLVDYTNHEDMKY 164
Query: 116 ALESTDRSKL 125
A+ D ++
Sbjct: 165 AIRKLDDTEF 174
>gi|213515420|ref|NP_001133374.1| nuclear receptor coactivator 5 [Salmo salar]
gi|209152341|gb|ACI33108.1| Nuclear receptor coactivator 5 [Salmo salar]
Length = 676
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 73/169 (43%), Gaps = 27/169 (15%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQE--EATKALESTDRSKL 125
+FV N +D++ F PYG + + + + + FVQFE E EA KA ++ K
Sbjct: 31 IFVGNLPTSLMDRKDMEELFSPYGKIHALSMFQGYGFVQFERVEDAEAAKAGQNGRPYKG 90
Query: 126 VDRVISVEYALKDDSERDDRYDSPRR---GGYGRHSPYGRSPSPAYRRRPSPDYGRGRSP 182
I++ + ++ R PRR GGYG GR P P R RSP
Sbjct: 91 YKIAINMAAERQRQNKAQSRPSPPRRDPYGGYGE----GREPRP-----------RSRSP 135
Query: 183 AYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRS 231
+ R + R S +H R P + R D+ R PNF RYR+
Sbjct: 136 MHGRDS---RAHRGSREHSRE----PGREPRHPRDHHEPRDPNFDRYRT 177
>gi|332807982|ref|XP_513202.3| PREDICTED: uncharacterized protein LOC456627 isoform 5 [Pan
troglodytes]
Length = 176
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNVAD-DTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|299753075|ref|XP_001833047.2| hypothetical protein CC1G_01109 [Coprinopsis cinerea okayama7#130]
gi|298410132|gb|EAU88736.2| hypothetical protein CC1G_01109 [Coprinopsis cinerea okayama7#130]
Length = 279
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 75 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134
P R D+ + FE YG ++ R+ F FV+FE+ ++A A+ + + I VE+
Sbjct: 11 PPDARSDDVSKFFEGYGRIIDCRVMTGFGFVEFESSKDAEDAVHQFNGKPFMGTAIVVEF 70
Query: 135 A 135
A
Sbjct: 71 A 71
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 8/129 (6%)
Query: 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK 66
GF FV FE +DA DA+ + PF + VE+A+ R R ++ +RP
Sbjct: 35 MTGFGFVEFESSKDAEDAVHQFNGKPFMG--TAIVVEFAKESRPRREVAPRA---RRPPG 89
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNF---AFVQFETQEEATKALESTDRS 123
+++ T +D+K +V I R+ +++ ++E+A +A++ D
Sbjct: 90 VRLIVSGISRDTSWQDLKDFGREVASVSFADIDRDVPGQGVLEYLSREDADRAVKDLDGR 149
Query: 124 KLVDRVISV 132
+L +++ V
Sbjct: 150 ELRGKLVRV 158
>gi|426221980|ref|XP_004005183.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Ovis aries]
Length = 595
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 252 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 305
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 306 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 357
>gi|383415877|gb|AFH31152.1| serine/arginine-rich splicing factor 12 [Macaca mulatta]
Length = 261
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATK 115
P +LF+ N TR D++R F YG ++ V I R FA+VQFE EA
Sbjct: 8 PNTSLFIRNVADA-TRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVREAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + +R + R I +++A D
Sbjct: 67 ALYNLNRKWVCGRQIEIQFAQGD 89
>gi|380024306|ref|XP_003695942.1| PREDICTED: LOW QUALITY PROTEIN: serine/arginine-rich splicing
factor 1-like [Apis florea]
Length = 248
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 79/188 (42%), Gaps = 28/188 (14%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW------------ARGERGRHRDGSK 57
FAFV F+D RDA DA+ D + YD RL VE+ RG R G
Sbjct: 48 FAFVEFDDPRDAEDAVHARDG--YDYDGYRLRVEFPRGGGPSNNFRGGRGAGDSGRGGRG 105
Query: 58 SMANQRP-------TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFET 109
M+N R ++ ++ P +D+K H G+V + ++ V+F
Sbjct: 106 EMSNSRGRGPPARRSQYRVLVTGLPPSGSWQDLKDHMREAGDVCFADVFKDGTGVVEFLR 165
Query: 110 QEEATKALESTDRSKLVDRVISVEYA-LKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAY 168
E+ A++ D S+ V Y +K+D DR S R R + RS SP
Sbjct: 166 YEDMKYAVKKXDDSRFRSHEGEVAYIRVKEDHNSGDRGRSEDR---ERGRSHSRSYSP-- 220
Query: 169 RRRPSPDY 176
RRR SP Y
Sbjct: 221 RRRGSPTY 228
>gi|448878366|gb|AGE46146.1| arginine/serine-rich splicing factor SR30 transcript V [Sorghum
bicolor]
Length = 278
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG--------RHRDGSKSMA 60
GFAFV FED DA DAI G D + +D RL VE A G RG + + A
Sbjct: 46 GFAFVEFEDPHDAEDAIYGRDG--YNFDGHRLRVELAHGGRGPSSFDRSSSYSSAGQRGA 103
Query: 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKA 116
++R + V P +D+K H G+V + R + E+ A
Sbjct: 104 SKRSDYRVMVTGL-PSSASWQDLKDHMRRAGDVCFTDVYREAGATIGIADYTNYEDMKHA 162
Query: 117 LESTDRSKL 125
+ D S+
Sbjct: 163 IRKLDDSEF 171
>gi|42561780|ref|NP_563787.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|28973767|gb|AAO64199.1| putative transformer-SR ribonucleoprotein [Arabidopsis thaliana]
gi|332189991|gb|AEE28112.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 382
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 56 SKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQF 107
S S + P +L+V R ERD++ HF G V V + R F F+
Sbjct: 65 SVSSDAENPGNSLYVTGLS-HRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISM 123
Query: 108 ETQEEATKALESTDRSKLVDRVISVEYA 135
++ +A + + S D S L RVI+VE A
Sbjct: 124 KSVGDANRCIRSLDHSVLQGRVITVEKA 151
>gi|378729160|gb|EHY55619.1| hypothetical protein HMPREF1120_03749 [Exophiala dermatitidis
NIH/UT8656]
Length = 833
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 66/154 (42%), Gaps = 20/154 (12%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFV N + +RD+ F +G + + I++ + FVQ+ AL++ S++
Sbjct: 379 LFVGNLASEKVTKRDLFHVFHKHGRLAQISIKQAYGFVQYLEASSCQAALQAEQGSEIRG 438
Query: 128 RVISVEYALKDDSERDD-------RYDSPRRGGYGRHSPYGRSPSPAY--------RRRP 172
R I +E + + R+ R SP RG +H YGR R P
Sbjct: 439 RKIHLEVSKPQKNTRNQAQGNKRRRSRSPDRGTARQHDRYGRHDFRDDRNRRDYRSTRSP 498
Query: 173 SPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSP 206
SP + RGR D Y G R +PD GR SP
Sbjct: 499 SPRHFRGR----DDYRGNAQSPRFAPD-GRQGSP 527
>gi|49618989|gb|AAT68079.1| nucleolin [Danio rerio]
Length = 667
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+AFV FE+ D+ +A+ +N + R + +E+++ +R G N PTKTL
Sbjct: 464 GYAFVEFENVEDSKEALENCNNTDI--EGRSIRLEYSQNDR---ERGGGGRGNSGPTKTL 518
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALEST 120
FV T ++ +K F+ + RI + F FV F+ +++ A E+
Sbjct: 519 FVKGLSD-DTTDQTLKDSFD---GAIAARIATDRDTGSSKGFGFVDFDNEQDCKAAKEAM 574
Query: 121 DRSKLVDRVISVEYA 135
D ++ ++++YA
Sbjct: 575 DDGEIDGNKVTLDYA 589
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 29/156 (18%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
F +V F + + A+ + ++L + + ++ R ++ S+ +R +TLF
Sbjct: 291 FGYVDFASEEELQKALE--------LNGKKLLGQPVKLDKARSKENSQENKKERDARTLF 342
Query: 70 VINFDPIRTRERDIKRHFE-------PYGNVLHVRIRRNFAFVQFETQEEATKALESTDR 122
V N P + D++ F+ P GN R +++F+T+ A KALE
Sbjct: 343 VKNL-PYSITQDDLREIFDQAVDIRVPMGNT---GTSRGIVYIEFKTEAIAEKALEEAQG 398
Query: 123 SKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHS 158
S + R I V++ D R+GG G S
Sbjct: 399 SDVQGRSIIVDFT----------GDKSRQGGRGAPS 424
>gi|300360554|ref|NP_001177938.1| serine/arginine-rich splicing factor 10 isoform 6 [Homo sapiens]
gi|332266733|ref|XP_003282352.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Nomascus
leucogenys]
gi|332807985|ref|XP_001166490.2| PREDICTED: uncharacterized protein LOC456627 isoform 4 [Pan
troglodytes]
gi|344287392|ref|XP_003415437.1| PREDICTED: serine/arginine-rich splicing factor 10-like isoform 3
[Loxodonta africana]
gi|345793665|ref|XP_866416.2| PREDICTED: serine/arginine-rich splicing factor 10 isoform 5 [Canis
lupus familiaris]
gi|403287346|ref|XP_003934910.1| PREDICTED: serine/arginine-rich splicing factor 10 [Saimiri
boliviensis boliviensis]
gi|410170861|ref|XP_003960063.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Homo
sapiens]
gi|426328343|ref|XP_004024962.1| PREDICTED: serine/arginine-rich splicing factor 10 [Gorilla gorilla
gorilla]
gi|194382312|dbj|BAG58911.1| unnamed protein product [Homo sapiens]
gi|410223012|gb|JAA08725.1| serine/arginine-rich splicing factor 10 [Pan troglodytes]
Length = 165
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNVAD-DTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|335307327|ref|XP_003127745.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Sus scrofa]
Length = 589
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 344 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 395
>gi|50540286|ref|NP_001002610.1| splicing factor, arginine/serine-rich 5 [Danio rerio]
gi|49900455|gb|AAH75982.1| Splicing factor, arginine/serine-rich 5b [Danio rerio]
Length = 285
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+F+ +A A+ D +L +
Sbjct: 6 IFIGRLNP-SAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDAEDAVYELDGKELCN 64
Query: 128 RVISVEYA 135
+++E+A
Sbjct: 65 ERVTIEHA 72
>gi|357123127|ref|XP_003563264.1| PREDICTED: uncharacterized RNA-binding protein C25G10.01-like
[Brachypodium distachyon]
Length = 272
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 9/75 (12%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATKALE 118
TL+V + +R++K +F G V+ H R+ R FAF+ +T E+A + ++
Sbjct: 67 TLYVTGLS-SKVTDRELKDYFNKEGKVVSCHVVLEPHTRVSRGFAFITMDTVEDAERCIK 125
Query: 119 STDRSKLVDRVISVE 133
++S+L R I+VE
Sbjct: 126 YLNQSELQGRHITVE 140
>gi|47575808|ref|NP_001001248.1| arginine/serine-rich splicing factor 4 isoform 1 [Xenopus
(Silurana) tropicalis]
gi|45872604|gb|AAH68213.1| splicing factor, arginine/serine-rich 6 [Xenopus (Silurana)
tropicalis]
Length = 568
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 21/140 (15%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRD----GSKS-MANQR 63
G+ FV FED RDA DA+ L+ + R+ VE ARG R R RD GS+S NQR
Sbjct: 36 GYGFVEFEDSRDADDAVYELNGKDLCGE--RVIVEHARGPR-RDRDGYGYGSRSGYRNQR 92
Query: 64 --------PTKTLFVINFDPIRTRE--RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQ 110
P +T F + + + +R +D+K G V + + R N ++F +
Sbjct: 93 SGRDKYGPPVRTEFRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERANEGVIEFRSY 152
Query: 111 EEATKALESTDRSKLVDRVI 130
+ +A+E D +++ R I
Sbjct: 153 SDMKRAMEKLDGTEINGRRI 172
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
RE+DI+R F YG +L V ++ + FV+FE +A A+ + L + VE+A
Sbjct: 13 VREKDIQRFFGGYGKLLEVDLKNGYGFVEFEDSRDADDAVYELNGKDLCGERVIVEHA 70
>gi|389748594|gb|EIM89771.1| hypothetical protein STEHIDRAFT_128672 [Stereum hirsutum FP-91666
SS1]
Length = 276
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 75 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134
P R D+ + FE YG ++ R+ F FV+FE+ +A AL + + + VE+
Sbjct: 11 PTDARTDDVSKFFEGYGKIVDCRVMTGFGFVEFESSRDAEDALNHFNGKPFMGTNLVVEF 70
Query: 135 ALKDDSERDDRYDSPRRGGYGRHSPYGRSP 164
A + PRR Y +P R P
Sbjct: 71 A---------KESRPRRDPYDDRAPRARRP 91
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 10/137 (7%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMA--NQRPT 65
GF FV FE RDA DA+ + PF L VE+A+ R R RD A +RP
Sbjct: 36 TGFGFVEFESSRDAEDALNHFNGKPFM--GTNLVVEFAKESRPR-RDPYDDRAPRARRPP 92
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNF---AFVQFETQEEATKALESTDR 122
+++ T +D+K G+V I R+ +++ +E+A +A++ D
Sbjct: 93 GIRIIVSGISRDTSWQDLKDFGREAGSVSFADIERDVPGQGVLEYLAREDAERAVKDLDG 152
Query: 123 SKLVDRVISVEYALKDD 139
L R V AL +D
Sbjct: 153 KDL--RGQPVRVALSED 167
>gi|194707750|gb|ACF87959.1| unknown [Zea mays]
gi|414885794|tpg|DAA61808.1| TPA: hypothetical protein ZEAMMB73_995180 [Zea mays]
Length = 433
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 83/197 (42%), Gaps = 14/197 (7%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR---GERGRHRDGSKSMANQRPT 65
G+ FV F DD + A+ ++ + R+ R G G + ++S
Sbjct: 239 GYGFVRFGDDSEKTQAMTEMNGVYCSSRPMRIGPATPRKSSGTSGSNGSAARSDGGDLTN 298
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVR--IRRNFAFVQFETQEEATKALESTDRS 123
T+FV DP E D+++ F YG + V+ I + FVQF ++ A AL+ + S
Sbjct: 299 TTVFVGGLDP-NVSEEDLRQTFSQYGEISSVKIPIGKQCGFVQFAQRKNAEDALQGLNGS 357
Query: 124 KLVDRVISVEYALKDDSE--RDDRYDSPRRGGYGRHSP--YGRSPSPAYRRRPSPDYGRG 179
+ + + + + ++ R D + GG +P Y PA P PD G
Sbjct: 358 TIGKQNVRLSWGRNPANKQFRGDNGNQWNNGGMYYAAPPFYNGYGYPA--AAPFPDPGMY 415
Query: 180 RSPAYDRYNGPVYDQRR 196
+PAY Y P Y ++
Sbjct: 416 AAPAYGAY--PFYGNQQ 430
>gi|73950236|ref|XP_866562.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 7
[Canis lupus familiaris]
gi|403287394|ref|XP_003934933.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Saimiri boliviensis boliviensis]
gi|410966348|ref|XP_003989695.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Felis catus]
gi|85681819|gb|ABC73063.1| heterogeneous nuclear ribonucleoprotein-R2 [Homo sapiens]
Length = 595
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 252 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 305
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 306 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 357
>gi|338722115|ref|XP_003364486.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Equus caballus]
Length = 595
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 252 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 305
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 306 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 357
>gi|115463447|ref|NP_001055323.1| Os05g0364600 [Oryza sativa Japonica Group]
gi|113578874|dbj|BAF17237.1| Os05g0364600 [Oryza sativa Japonica Group]
Length = 294
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 14/128 (10%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRD-------GSKSMAN 61
G+AFV FED RDA DAI G + +D RL VE A G RG D + A
Sbjct: 46 GYAFVEFEDPRDAQDAIYGRHG--YDFDGHRLRVELAHGGRGPSFDRSSSYSSAGRRGAA 103
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKAL 117
+R + V P +D+K H G+V + R V + E+ +A+
Sbjct: 104 KRTDYRVMVTGL-PSSASWQDLKDHMRRAGDVCFSDVYREGGATIGIVDYTNYEDMKQAI 162
Query: 118 ESTDRSKL 125
D S+
Sbjct: 163 RKLDDSEF 170
>gi|222636246|gb|EEE66378.1| hypothetical protein OsJ_22698 [Oryza sativa Japonica Group]
Length = 284
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATKALE 118
TL+V R ER++K +F G V H R+ R FAFV +T E+A + ++
Sbjct: 77 TLYVTGLS-SRVTERELKDYFSKEGRVTSCHVVLEPHTRVSRGFAFVTMDTVEDAERCIK 135
Query: 119 STDRSKLVDRVISVE 133
++S + R I+VE
Sbjct: 136 YLNQSVMEGRNITVE 150
>gi|449274709|gb|EMC83787.1| Splicing factor, arginine/serine-rich 4, partial [Columba livia]
Length = 257
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134
R RERD+++ F+ YG + + ++ F FV+FE +A A+ + +L D +++E+
Sbjct: 14 RARERDVEKFFKGYGRIREIHLKNGFGFVEFEDHRDADDAIYELNGKELCDERVTIEH 71
>gi|388516667|gb|AFK46395.1| unknown [Lotus japonicus]
Length = 268
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATKALE 118
TL+V R ERD++ HF G V RI R FAF+ +T E+A + ++
Sbjct: 92 TLYVTGLSS-RVTERDLEEHFAKEGKVASCFLVVEPRTRISRGFAFITMDTVEDANRCVK 150
Query: 119 STDRSKLVDRVISVE 133
++S L R I+VE
Sbjct: 151 YLNQSVLEGRYITVE 165
>gi|395821031|ref|XP_003783853.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Otolemur garnettii]
Length = 595
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 252 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 305
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 306 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 357
>gi|336465804|gb|EGO53969.1| hypothetical protein NEUTE1DRAFT_118022 [Neurospora tetrasperma
FGSC 2508]
gi|350287365|gb|EGZ68612.1| hypothetical protein NEUTE2DRAFT_146011 [Neurospora tetrasperma
FGSC 2509]
Length = 315
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 15/147 (10%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR----- 63
GF F+ ++D DA D + F +R L+V++ARG RHR+G ++R
Sbjct: 43 GFGFIEYKDAMDARDVVPAFHGSDFMGER--LTVQFARG--ARHREGGPGFTHERNSQPR 98
Query: 64 PTKTL--FVINFDPIRTRERDIKRHFEPYG-NVLHVRIRRNF---AFVQFETQEEATKAL 117
P +T I+ P T +D+K G +V++ RN FV+FE + A+
Sbjct: 99 PRRTPHRMQISGLPNETSWQDLKDFARQSGLDVVYSETTRNQNGEGFVEFENAADLRTAV 158
Query: 118 ESTDRSKLVDRVISVEYALKDDSERDD 144
E D + + ++ + D R+D
Sbjct: 159 EKLDNREFKGQRVTCVANTQPDIPRND 185
>gi|327308522|ref|XP_003238952.1| hypothetical protein TERG_00938 [Trichophyton rubrum CBS 118892]
gi|326459208|gb|EGD84661.1| hypothetical protein TERG_00938 [Trichophyton rubrum CBS 118892]
Length = 933
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LF+ N R +RD+ F +G + + I++ + F+QF + KAL++ S +
Sbjct: 447 LFIGNLPTERVTKRDLFHIFHMHGKLAQISIKQAYGFIQFLEPDSCRKALQAQQGSTIRG 506
Query: 128 RVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRY 187
R I +E + +R R P GR RSP R P P GR + YDR
Sbjct: 507 RKIHLEIS---KPQRGARNSGPTENS-GRKQRRSRSPEYERNREPPPRGGRSAADRYDRG 562
Query: 188 NG 189
G
Sbjct: 563 PG 564
>gi|389640647|ref|XP_003717956.1| hypothetical protein MGG_11457 [Magnaporthe oryzae 70-15]
gi|351640509|gb|EHA48372.1| hypothetical protein MGG_11457 [Magnaporthe oryzae 70-15]
Length = 331
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 23/158 (14%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSM--------- 59
GF F+ ++D DA D + F +R L+V++ARG R R
Sbjct: 43 GFGFIEYDDPLDARDVVPAFHGSTFMGER--LTVQFARGTRNREGGSGGGGGGGGGGGGG 100
Query: 60 -----ANQRPTKTLFVINFD--PIRTRERDIKRHF-EPYGNVLHVRIRRNF---AFVQFE 108
+ RP +T F + P+ T +D+K + +V++ RN FV+FE
Sbjct: 101 YGGERSGPRPRRTAFRMQISGLPVDTSWQDLKDFARQSQLDVVYSETGRNNNGEGFVEFE 160
Query: 109 TQEEATKALESTDRSKLVDRVI-SVEYALKDDSERDDR 145
T + A+E+ D + D+++ V D RD R
Sbjct: 161 TAADLASAVEALDGKEFKDKIVRCVANTQPDPPPRDGR 198
>gi|218198902|gb|EEC81329.1| hypothetical protein OsI_24503 [Oryza sativa Indica Group]
Length = 273
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATKALE 118
TL+V R ER++K +F G V H R+ R FAFV +T E+A + ++
Sbjct: 66 TLYVTGLS-SRVTERELKDYFSKEGRVTSCHVVLEPHTRVSRGFAFVTMDTVEDAERCIK 124
Query: 119 STDRSKLVDRVISVE 133
++S + R I+VE
Sbjct: 125 YLNQSVMEGRNITVE 139
>gi|336259387|ref|XP_003344495.1| hypothetical protein SMAC_08745 [Sordaria macrospora k-hell]
gi|380087464|emb|CCC05381.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 912
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 86/208 (41%), Gaps = 58/208 (27%)
Query: 33 FGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 92
F D R+ ++E AR E+ R +GS+ +F+ N R +R++ F +G
Sbjct: 421 FLVDERQYTLE-ARWEQ-RFPEGSR----------IFIGNLSCERVSKREVFDVFSKFGR 468
Query: 93 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRG 152
+ + ++ + FVQ+ T EE A+ +L R I++E + K D R + D
Sbjct: 469 LAQISLKNAYGFVQYHTIEEGLAAIRGCRDIELGGRAINLEISKKQDRARKEHSD----- 523
Query: 153 GYGRHSPYGRSP-----------------SPAYRR---RPSPDYGRGRSP---------- 182
+GR RSP P +RR RP P GR SP
Sbjct: 524 -HGRERERERSPDRRPQRDTRIRDRYEARDPGWRRDDYRPGP--GRSPSPRRGSRDGRYA 580
Query: 183 --AYDRYNGPVYDQRRSPDHGRHRSPVP 208
+ DR GP YD RRS RSP P
Sbjct: 581 RDSRDRDFGPGYDSRRS------RSPPP 602
>gi|238484361|ref|XP_002373419.1| arginine/serine-rich splicing factor, putative [Aspergillus flavus
NRRL3357]
gi|220701469|gb|EED57807.1| arginine/serine-rich splicing factor, putative [Aspergillus flavus
NRRL3357]
gi|391871889|gb|EIT81038.1| arginine/serine-rich splicing factor, putative [Aspergillus oryzae
3.042]
Length = 900
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 24/178 (13%)
Query: 29 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHF 87
D+ P+G D ++ E+ ER +G + ++ P + LFV N R +RD+ F
Sbjct: 385 DDAPWGPDVQKKYDEFLHDERVYVTEG---LWDRFPAGSRLFVGNLPTERVTKRDLFHIF 441
Query: 88 EPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYD 147
YG + + I++ + F+QF +AL+ + + R + +E +
Sbjct: 442 HKYGKLAQISIKQAYGFIQFLEAPACKQALDVEQGAVVRGRKVHLEIS------------ 489
Query: 148 SPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPA-------YDRYNGPVYDQRRSP 198
P+R +P S +P RR SP+Y RG P+ DRY+ P Y+ R P
Sbjct: 490 KPQRNTRPGPAPAEPSRAPPARRSRSPEYSRGGPPSSRNPRAPTDRYDRP-YESPRVP 546
>gi|54291012|dbj|BAD61690.1| putative transformer-SR ribonucleoprotein [Oryza sativa Japonica
Group]
gi|54291611|dbj|BAD62534.1| putative transformer-SR ribonucleoprotein [Oryza sativa Japonica
Group]
gi|215737009|dbj|BAG95938.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 273
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATKALE 118
TL+V R ER++K +F G V H R+ R FAFV +T E+A + ++
Sbjct: 66 TLYVTGLS-SRVTERELKDYFSKEGRVTSCHVVLEPHTRVSRGFAFVTMDTVEDAERCIK 124
Query: 119 STDRSKLVDRVISVE 133
++S + R I+VE
Sbjct: 125 YLNQSVMEGRNITVE 139
>gi|395854840|ref|XP_003799887.1| PREDICTED: serine/arginine-rich splicing factor 10 [Otolemur
garnettii]
Length = 221
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|358385967|gb|EHK23563.1| hypothetical protein TRIVIDRAFT_11373, partial [Trichoderma virens
Gv29-8]
Length = 773
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ N + +RD+ F YG + + ++ + FVQ+ T EE ALE+ ++
Sbjct: 311 IFIGNLSSDKVSKRDVFDIFHRYGRLAQISLKSAYGFVQYHTVEEGRSALENLQGMEVKG 370
Query: 128 RVISVEYALKDDSERDDRYDSP 149
R I +E + D + +R SP
Sbjct: 371 RRIHLEISRLQDKSKKERNRSP 392
>gi|388515137|gb|AFK45630.1| unknown [Medicago truncatula]
Length = 259
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 54/130 (41%), Gaps = 15/130 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG---------RHRDGSKSM 59
G+AFV FED RDA DAI D F D RL VE A G RG RH S S
Sbjct: 46 GYAFVEFEDARDAQDAIYYRDGYDF--DGYRLLVELAHGGRGSSSSVDRYSRHSGRSGSR 103
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATK 115
R + ++ P +D+K H G+V ++ R V + ++
Sbjct: 104 GVSRRSDYRVLVTGLPPSASWQDLKDHMRKAGHVCFSQVFRERGGLTGIVDYTNYDDVKY 163
Query: 116 ALESTDRSKL 125
A+ D S+
Sbjct: 164 AIRKLDDSEF 173
>gi|294873441|ref|XP_002766629.1| Arginine/serine-rich-splicing factor, putative [Perkinsus marinus
ATCC 50983]
gi|239867661|gb|EEQ99346.1| Arginine/serine-rich-splicing factor, putative [Perkinsus marinus
ATCC 50983]
Length = 477
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATKA 116
+Q + + P RE +++ F G V V+I R +AF+QF+T+ A +A
Sbjct: 158 SQAGCASRIWVGGLPSDVREVELEDRFGKIGRVTDVKICQSSRDTYAFLQFDTEGAAAEA 217
Query: 117 LESTDRSKLVDRVISVEYALKDDSE 141
+E D++K I V +A + SE
Sbjct: 218 IEDVDQTKFGGFTIKVAHATRQSSE 242
>gi|310772202|ref|NP_001006476.2| serine/arginine-rich splicing factor 5a [Gallus gallus]
gi|326920574|ref|XP_003206544.1| PREDICTED: serine/arginine-rich splicing factor 4-like [Meleagris
gallopavo]
Length = 278
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134
R RERD+++ F+ YG + + ++ F FV+FE +A A+ + +L D +++E+
Sbjct: 14 RARERDVEKFFKGYGRIREIHLKNGFGFVEFEDHRDADDAIYELNGKELCDERVTIEH 71
>gi|149024313|gb|EDL80810.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_a [Rattus
norvegicus]
Length = 447
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 231 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 284
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 285 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 336
>gi|449267775|gb|EMC78677.1| Heterogeneous nuclear ribonucleoprotein R [Columba livia]
Length = 633
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA+ +
Sbjct: 344 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMNEMN 395
>gi|410170863|ref|XP_003960064.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Homo
sapiens]
Length = 146
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNVAD-DTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|392567011|gb|EIW60186.1| hypothetical protein TRAVEDRAFT_27854 [Trametes versicolor
FP-101664 SS1]
Length = 288
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 75 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134
P R ++ + F+ YG ++ R+ F FV+FE+ +A A+++ + + I VE+
Sbjct: 11 PPDVRSEEVSKFFDGYGRIVDCRVMTGFGFVEFESSRDAEDAMQNFNGKNFMGSNIVVEF 70
Query: 135 ALKDDSERDDRYDSPR 150
A K+ R D YD+ R
Sbjct: 71 A-KETRPRRDPYDADR 85
>gi|194697962|gb|ACF83065.1| unknown [Zea mays]
gi|414885795|tpg|DAA61809.1| TPA: hypothetical protein ZEAMMB73_995180 [Zea mays]
Length = 320
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 83/197 (42%), Gaps = 14/197 (7%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR---GERGRHRDGSKSMANQRPT 65
G+ FV F DD + A+ ++ + R+ R G G + ++S
Sbjct: 126 GYGFVRFGDDSEKTQAMTEMNGVYCSSRPMRIGPATPRKSSGTSGSNGSAARSDGGDLTN 185
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVR--IRRNFAFVQFETQEEATKALESTDRS 123
T+FV DP E D+++ F YG + V+ I + FVQF ++ A AL+ + S
Sbjct: 186 TTVFVGGLDP-NVSEEDLRQTFSQYGEISSVKIPIGKQCGFVQFAQRKNAEDALQGLNGS 244
Query: 124 KLVDRVISVEYALKDDSE--RDDRYDSPRRGGYGRHSP--YGRSPSPAYRRRPSPDYGRG 179
+ + + + + ++ R D + GG +P Y PA P PD G
Sbjct: 245 TIGKQNVRLSWGRNPANKQFRGDNGNQWNNGGMYYAAPPFYNGYGYPA--AAPFPDPGMY 302
Query: 180 RSPAYDRYNGPVYDQRR 196
+PAY Y P Y ++
Sbjct: 303 AAPAYGAY--PFYGNQQ 317
>gi|147903707|ref|NP_001088237.1| serine/arginine-rich splicing factor 12 [Xenopus laevis]
gi|54038377|gb|AAH84231.1| LOC495068 protein [Xenopus laevis]
Length = 251
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA++QFE +A
Sbjct: 8 PNTSLFVRNVGDA-TRPEDLRREFGRYGPIVDVYVPLDFYNRRPRGFAYIQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + +R + R I +++A D
Sbjct: 67 ALYNLNRKWVCGRQIEIQFAQGD 89
>gi|336266018|ref|XP_003347779.1| hypothetical protein SMAC_03877 [Sordaria macrospora k-hell]
gi|380091314|emb|CCC11171.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 315
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 15/147 (10%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR----- 63
GF F+ ++D DA D + F +R L+V++ARG RHR+G ++R
Sbjct: 43 GFGFIEYKDAMDARDVVPAFHGSDFMGER--LTVQFARG--ARHREGGPGFTHERNSQPR 98
Query: 64 PTKTL--FVINFDPIRTRERDIKRHFEPYG-NVLHVRIRRNF---AFVQFETQEEATKAL 117
P +T I+ P T +D+K G +V++ RN FV+FE + A+
Sbjct: 99 PRRTPHRMQISGLPNETSWQDLKDFARQSGLDVVYSETTRNQNGEGFVEFENAADLRTAV 158
Query: 118 ESTDRSKLVDRVISVEYALKDDSERDD 144
E D + + ++ + D R+D
Sbjct: 159 EKLDNREFKGQRVTCVANTQPDIPRND 185
>gi|449502441|ref|XP_002200515.2| PREDICTED: serine/arginine-rich splicing factor 4-like [Taeniopygia
guttata]
Length = 277
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134
R RERD+++ F+ YG + + ++ F FV+FE +A A+ + +L D +++E+
Sbjct: 14 RARERDVEKFFKGYGRIREIHLKNGFGFVEFEDHRDADDAIYELNGKELCDERVTIEH 71
>gi|145515315|ref|XP_001443557.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124410946|emb|CAK76160.1| unnamed protein product [Paramecium tetraurelia]
Length = 186
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Query: 65 TKTLFVINFDPIR-TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRS 123
+ LFV + + T ERD++ F YG++ V + +++F+ F ++EA +AL + +
Sbjct: 6 SNQLFVAGYSRSKVTDERDVREIFRKYGSLKEVAYKGSYSFITFSNEDEAKEALTEMNGT 65
Query: 124 -----KL-VDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSP 164
KL VD V + + +E D+ + R G + R P GRSP
Sbjct: 66 THNGQKLKVDVVDNRKGRRTGPNESDECFKCGRGGHWARDCPKGRSP 112
>gi|378727012|gb|EHY53471.1| hypothetical protein HMPREF1120_01663 [Exophiala dermatitidis
NIH/UT8656]
Length = 316
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 77/192 (40%), Gaps = 37/192 (19%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHR-DGSKSMANQRPTKT 67
GF F+ +ED DA D + F +R L+V++ARG R + +G RP +T
Sbjct: 43 GFGFIEYEDPMDARDVVPAFHGTEFKGER--LTVQFARGPRRKDDFNGPSDRNIPRPRRT 100
Query: 68 LFVINFDPIR--TRERDIKRHFEPYGNVLHV-----RIRRNFAFVQFETQEEATKALEST 120
++ + ++ T +D+K G + V R R FV+FETQ + A+E
Sbjct: 101 IYRMQITGLQPDTSWQDLKDFARNSGQLDVVYSETGRERDGKGFVEFETQADLKTAVEKL 160
Query: 121 DRSKLVDRVISVEYALKDD-----------------SERDDRYD---------SPRRGGY 154
D + ++D+ DD +D SPR GY
Sbjct: 161 DGQTFKGATVHCVADIQDERPDMRSYRQRSPPRGRYGPMDDYHDRRGPPQRGWSPRGSGY 220
Query: 155 GRHSPYGRSPSP 166
SP GR P P
Sbjct: 221 RERSP-GRRPPP 231
>gi|356549711|ref|XP_003543235.1| PREDICTED: uncharacterized protein LOC100816831 [Glycine max]
Length = 934
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 6/136 (4%)
Query: 46 RGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFA 103
RG RD S N P++ L+V N E ++ HF YG + +V + R++A
Sbjct: 23 RGNGVGGRDNRNSSRNNPPSRHLWVGNLS-HNIVEEELAHHFLRYGPLENVAFQPGRSYA 81
Query: 104 FVQFETQEEATKALESTDRSKLVDRVISVEYALKDD---SERDDRYDSPRRGGYGRHSPY 160
F+ F E+A AL + L + +E+A D + D+ Y R R SP+
Sbjct: 82 FINFRMDEDAIDALRALQGFPLAGNPLRIEFAKADKPSAMQHDEDYSWDERNSILRGSPF 141
Query: 161 GRSPSPAYRRRPSPDY 176
+ Y P P Y
Sbjct: 142 SQREFRGYHGSPEPHY 157
>gi|346322984|gb|EGX92582.1| transformer-SR ribonucleoprotein, putative [Cordyceps militaris
CM01]
Length = 375
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATK 115
P LFV P R E ++ + FE YG V +I R F FV+ T E+A
Sbjct: 68 PGSNLFVTGIHP-RLSEAEVTKMFEKYGEVEKCQIMKDPHSKESRGFGFVKMVTPEQAEA 126
Query: 116 ALESTDRSKLVDRVISVEYA 135
A E + R +S+E A
Sbjct: 127 AREGLQGEVIEGRTLSIEKA 146
>gi|327288394|ref|XP_003228911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Anolis
carolinensis]
Length = 632
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA+ +
Sbjct: 344 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMNEMN 395
>gi|330925215|ref|XP_003300959.1| hypothetical protein PTT_12345 [Pyrenophora teres f. teres 0-1]
gi|311324663|gb|EFQ90950.1| hypothetical protein PTT_12345 [Pyrenophora teres f. teres 0-1]
Length = 275
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 47/110 (42%), Gaps = 16/110 (14%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEATKALE 118
LFV P + E ++ R FE YG V H + R F FV+ T ++A A E
Sbjct: 66 NLFVTGIHPTLSEE-EVTRLFEKYGEVEQCNIMRDPHTKESRGFGFVKMVTSDQADAAKE 124
Query: 119 STDRSKLVDRVISVEYA--LKDDSERDDRYDSP-----RRGGYGRHSPYG 161
R +S+E A + + +Y P RRGGYGR YG
Sbjct: 125 GLQGEVHQGRTLSIEKARRARPRTPTPGKYYGPPKRDDRRGGYGRRDDYG 174
>gi|132626770|ref|NP_001006309.3| heterogeneous nuclear ribonucleoprotein R [Gallus gallus]
gi|326932873|ref|XP_003212536.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Meleagris gallopavo]
Length = 633
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA+ +
Sbjct: 344 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMNEMN 395
>gi|22902265|gb|AAH37591.1| FUS interacting protein (serine-arginine rich) 1 [Mus musculus]
Length = 261
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N T+ D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTQSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
>gi|426227971|ref|XP_004008088.1| PREDICTED: RNA-binding protein 28 isoform 1 [Ovis aries]
Length = 749
Score = 44.3 bits (103), Expect = 0.039, Method: Composition-based stats.
Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 41/189 (21%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE-RGRHRDGSKSMANQRPTKT 67
GF +V F D A++ + ++ R+++V A+ + R + ++ K+ ++ P K
Sbjct: 46 GFGYVTFSMLEDVQRALKEITT----FEGRKINVTVAKKKLRNKSKEKGKTENSESPKKE 101
Query: 68 L-------------FVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQF 107
L +I + E D+K F +G +L V I R FAFVQF
Sbjct: 102 LKPKKAKVADKKARLIIRNLSFKCSEDDLKTVFSQFGTILEVNIPRKPDGKMRGFAFVQF 161
Query: 108 ETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPA 167
+ EA KAL+ + ++ R ++V++A+ D ++ + S P
Sbjct: 162 KNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDKYKNTQSTS----------------VPG 205
Query: 168 YRRRPSPDY 176
+RP P++
Sbjct: 206 EEKRPEPEH 214
>gi|345491212|ref|XP_001603815.2| PREDICTED: serine-arginine protein 55-like isoform 2 [Nasonia
vitripennis]
Length = 364
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136
R RERD+++ F YG + V ++ FAFV+F+ +A A+ + +L+ I+VE A
Sbjct: 13 RVRERDLEKFFRKYGRIKEVAMKNGFAFVEFDDYRDADDAVYELNGKELLGERITVERAR 72
Query: 137 KDDSERDDRYDSPRRGGYG 155
D RGGYG
Sbjct: 73 GTPRGSDQWRYGDSRGGYG 91
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 70/165 (42%), Gaps = 45/165 (27%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG------------ERGRHRDGS 56
GFAFV F+D RDA DA+ L+ + R++VE ARG RG + D
Sbjct: 37 GFAFVEFDDYRDADDAVYELNGKELLGE--RITVERARGTPRGSDQWRYGDSRGGYGDSR 94
Query: 57 KS----MANQR----------------------PTKTLFVINFDPIRTR--ERDIKRHFE 88
+S M + R PT+T + + + + +R +D+K +
Sbjct: 95 RSARDDMRHDRDSVNRNTRTTSSYKQSLPRYGPPTRTEYRLTVENLSSRVSWQDLKDYMR 154
Query: 89 PYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 130
G V + + RRN V+F T + A+E D ++L R I
Sbjct: 155 QAGEVTYADAHKQRRNEGVVEFATYSDLKNAIEKLDDTELNGRRI 199
>gi|351698414|gb|EHB01333.1| Heterogeneous nuclear ribonucleoprotein R [Heterocephalus glaber]
Length = 402
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 94 GFRFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 147
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N R E +++ F +G + V+ +++AFV FE + A KA++ +
Sbjct: 148 FVRNL-VTRVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMN 199
>gi|225713170|gb|ACO12431.1| Splicing factor, arginine/serine-rich 4 [Lepeophtheirus salmonis]
Length = 129
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 137
TRERD+++ F+ YG + V ++ + FV+FE +A A++ D + + VE+A
Sbjct: 17 TRERDVEKFFKGYGKLREVALKNGYGFVEFEDHRDADDAVQDLDGKDMNGSRVRVEFARS 76
Query: 138 DDSERDDRY 146
+R+ RY
Sbjct: 77 PREKRNSRY 85
>gi|426232112|ref|XP_004010078.1| PREDICTED: uncharacterized protein LOC101116481 [Ovis aries]
Length = 233
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
RE+DI+R F YG +L + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 13 VREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHA 70
>gi|168000741|ref|XP_001753074.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695773|gb|EDQ82115.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 279
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 57/145 (39%), Gaps = 30/145 (20%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG------------------ 50
G+ F+ FED RDA DAIRG D + +D RL VE A G RG
Sbjct: 46 GYCFIEFEDARDAEDAIRGRDG--YNFDGNRLRVEIAHGGRGPPPASVDRYSIYSSGGGR 103
Query: 51 -----RHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN---- 101
+G ++ R ++ + P +D+K H G+V ++ R+
Sbjct: 104 GGGGSASENGGRAGGVSRRSEYRVTVTGLPSSASWQDLKDHMRRAGDVCFAQVFRDGSAG 163
Query: 102 -FAFVQFETQEEATKALESTDRSKL 125
V F ++ A+ D S+
Sbjct: 164 TMGIVDFTNYDDMKYAIRKLDDSEF 188
>gi|348522786|ref|XP_003448905.1| PREDICTED: transformer-2 protein homolog alpha-like [Oreochromis
niloticus]
Length = 279
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 12/110 (10%)
Query: 35 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 94
Y RR+ R RH + S AN P+ L V + T ERD++ F YG +
Sbjct: 91 YRRRKSQSTSPMSNRRRH---TGSRANPDPSTCLGVFGLS-LYTTERDLREVFSRYGPLA 146
Query: 95 HVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136
V + R FAFV FE E++ +A+E + +L R I V+Y++
Sbjct: 147 GVNVVYDQRTGRSRGFAFVYFERLEDSKEAMERANGMELDGRRIRVDYSI 196
>gi|222631305|gb|EEE63437.1| hypothetical protein OsJ_18250 [Oryza sativa Japonica Group]
Length = 305
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 14/128 (10%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRD-------GSKSMAN 61
G+AFV FED RDA DAI G + +D RL VE A G RG D + A
Sbjct: 46 GYAFVEFEDPRDAQDAIYGRHG--YDFDGHRLRVELAHGGRGPSFDRSSSYSSAGRRGAA 103
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKAL 117
+R + V P +D+K H G+V + R V + E+ +A+
Sbjct: 104 KRTDYRVMVTGL-PSSASWQDLKDHMRRAGDVCFSDVYREGGATIGIVDYTNYEDMKQAI 162
Query: 118 ESTDRSKL 125
D S+
Sbjct: 163 RKLDDSEF 170
>gi|255542756|ref|XP_002512441.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
gi|223548402|gb|EEF49893.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
Length = 300
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 15/130 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN------- 61
G+AFV FED RDA DAIRG D + +D RL VE A G R G + +
Sbjct: 83 GYAFVEFEDARDAEDAIRGRDG--YNFDGCRLRVELAHGGRRHSSPGDRYSSYSGRSGSR 140
Query: 62 --QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATK 115
R + ++ P +D+K H G+V ++ R+ V + ++
Sbjct: 141 GPSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTNYDDMKH 200
Query: 116 ALESTDRSKL 125
A++ D S+
Sbjct: 201 AIKKLDDSEF 210
>gi|396081464|gb|AFN83081.1| putative arginine/serine rich pre-mRNA splicing factor
[Encephalitozoon romaleae SJ-2008]
Length = 296
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 67/159 (42%), Gaps = 22/159 (13%)
Query: 75 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV-ISVE 133
P E IK +F +G V V ++ + F+ F+++ + L RS +D ISVE
Sbjct: 9 PNHVNEEQIKEYFGQFGEVTDVSLKGTYGFLNFDSESSIARVL--NQRSHTIDGAPISVE 66
Query: 134 YALK----DDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDY-GRGRSPA----- 183
A D E DRY RGGY H R +R P P GRSP
Sbjct: 67 RANGRKRPLDGEYHDRYMDMGRGGYSPH----RGDYRGFRNAPYPPMRYDGRSPGRYDPR 122
Query: 184 -YDRYNG--PVY--DQRRSPDHGRHRSPVPVYDRRRSPD 217
DRY G P Y D +RS D + + P++ R D
Sbjct: 123 FGDRYGGRSPEYRGDHQRSRDFCEYCNSCPIHGMRDMMD 161
>gi|315054267|ref|XP_003176508.1| hypothetical protein MGYG_00597 [Arthroderma gypseum CBS 118893]
gi|311338354|gb|EFQ97556.1| hypothetical protein MGYG_00597 [Arthroderma gypseum CBS 118893]
Length = 922
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LF+ N R +RD+ F +G + + I++ + F+QF + KAL++ S +
Sbjct: 438 LFIGNLPTERVTKRDLFHIFHMHGKLAQISIKQAYGFIQFLEPDSCRKALQAQQGSTIRG 497
Query: 128 RVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRY 187
R I +E + +R R P GR RSP R P P GR + Y+R
Sbjct: 498 RKIHLEIS---KPQRGARNSGPTESS-GRTQRRSRSPEYERNREPPPRAGRAAADRYERG 553
Query: 188 NG 189
G
Sbjct: 554 PG 555
>gi|432880368|ref|XP_004073663.1| PREDICTED: ras GTPase-activating protein-binding protein 1-like
[Oryzias latipes]
Length = 480
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 58/133 (43%), Gaps = 11/133 (8%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR-----NFAFVQFETQEEATKALESTDR 122
LFV N P + ++K FE YG VL +RI NF FV F+ E K L +
Sbjct: 347 LFVGNV-PHDVDKNELKEFFEQYGAVLELRINSGGKLPNFGFVVFDDSEPVQKILNNKPI 405
Query: 123 SKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSP-SPAYR----RRPSPDYG 177
D ++VE + DR DS RG G G P P R ++PS G
Sbjct: 406 KFRGDIRLNVEEKKTRSAREGDRRDSRPRGPGGPRERVGGGPRGPPTRGGMSQKPSFGSG 465
Query: 178 RGRSPAYDRYNGP 190
RG P+ R++ P
Sbjct: 466 RGAGPSESRFSAP 478
>gi|217073712|gb|ACJ85216.1| unknown [Medicago truncatula]
Length = 246
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 55/130 (42%), Gaps = 15/130 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG---------RHRDGSKSM 59
G+AFV FED RDA DAI D + +D RL VE A G RG RH S S
Sbjct: 46 GYAFVEFEDARDAQDAIYYRDG--YDFDGYRLLVELAHGGRGSSSSVDRYSRHSGRSGSR 103
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATK 115
R + ++ P +D+K H G+V ++ R V + ++
Sbjct: 104 GVSRRSDYRVLVTGLPPSASWQDLKDHMRKAGHVCFSQVFRERGGLTGIVDYTNYDDVKY 163
Query: 116 ALESTDRSKL 125
A+ D S+
Sbjct: 164 AIRKLDDSEF 173
>gi|390597697|gb|EIN07096.1| hypothetical protein PUNSTDRAFT_71302 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 282
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 75 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134
P TR D+ + F+ YG+++ R+ F FV+FE+ +A AL + I +E+
Sbjct: 12 PPDTRSEDVSKFFDGYGHIVDCRVMTGFGFVEFESTRDAEDALNHFNGKPFNGANIVIEF 71
Query: 135 ALKDDSERDDRYDSPR 150
A K+ R D Y++ R
Sbjct: 72 A-KESRPRRDVYEADR 86
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 89/215 (41%), Gaps = 10/215 (4%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKS--MANQRPT 65
GF FV FE RDA DA+ + PF + + +E+A+ R R RD ++ +RP
Sbjct: 37 TGFGFVEFESTRDAEDALNHFNGKPF--NGANIVIEFAKESRPR-RDVYEADRPRARRPP 93
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNF---AFVQFETQEEATKALESTDR 122
+++ T +D+K GNV + I R+ +++ T+E+A +A+ D
Sbjct: 94 GIRLIVSGVSRDTSWQDLKDFGREAGNVSYADIDRDHPGEGILEYLTREDADRAVRELDG 153
Query: 123 SKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSP 182
L R + V AL D D Y R R+ S + R
Sbjct: 154 KDLRGRQVRV--ALDDPRAGVDNYRRDDRRDDRDRGSDRRARSRSPPRYDDRRRSPPPRR 211
Query: 183 AYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPD 217
YD YD RR R+R P P YDRR D
Sbjct: 212 DYDERRPAGYDDRRGGYDDRYRGPDPYYDRRSEGD 246
>gi|221130958|ref|XP_002164143.1| PREDICTED: serine/arginine-rich splicing factor 4-like isoform 2
[Hydra magnipapillata]
Length = 264
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 64/139 (46%), Gaps = 18/139 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR-GERG--RHRDGSKSMANQ--- 62
G+AFV FED RDA DA+ LD F RL+VE A+ G R RDG + ++
Sbjct: 46 GYAFVEFEDKRDADDAVYELDRKEFFGS--RLTVEHAKHGPRADMDKRDGDRRKGHENDR 103
Query: 63 ---RPTKT---LFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEA 113
RP T L V N R D+K +F G V + R V+F + E
Sbjct: 104 GRGRPYNTEWRLIVTNLSS-RVGWMDLKDYFRSAGEVTFTKANKERVGEGVVEFRSYREM 162
Query: 114 TKALESTDRSKLVDRVISV 132
+AL+ D S+ DR I +
Sbjct: 163 KRALKKFDGSEFFDRRIKL 181
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYG--NVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125
+FV +P R RD++ F+ G + V I+ +AFV+FE + +A A+ DR +
Sbjct: 12 IFVGRLNP-EARVRDLENFFKDNGFSRLKDVNIKLGYAFVEFEDKRDADDAVYELDRKEF 70
Query: 126 VDRVISVEYALKDDSERDDRYDSPRRGGY----GRHSPY 160
++VE+A D+ D RR G+ GR PY
Sbjct: 71 FGSRLTVEHAKHGPRADMDKRDGDRRKGHENDRGRGRPY 109
>gi|356502130|ref|XP_003519874.1| PREDICTED: uncharacterized protein LOC100784338 [Glycine max]
Length = 884
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 17/129 (13%)
Query: 9 GFAFVYFEDDRDAADAIRGLD--NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK 66
GFAF+ F DA A + L ++ FG+ R V +A E R D + MA K
Sbjct: 514 GFAFLEFSCHADAMLAYKRLQKPDVMFGHAERTAKVAFA--EPIREPD-PEIMAQ---VK 567
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALE 118
++F IN P E ++ F+ YG V+ + + RN + FV F T E A ++
Sbjct: 568 SVF-INGLPPHWDEDHVRELFKSYGEVVRIVLARNMSSAKRKDYGFVDFSTHEAAVACVD 626
Query: 119 STDRSKLVD 127
++S+L D
Sbjct: 627 GVNKSELGD 635
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 12/72 (16%)
Query: 57 KSMANQRPTK---TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--------FAFV 105
+++ANQR K +FV D T E D+++ F+ G ++ VR+ +N +AFV
Sbjct: 377 EAIANQRKIKKEHEIFVGGLDRDATEE-DLRKVFQRIGEIVEVRLHKNSSTNKNKGYAFV 435
Query: 106 QFETQEEATKAL 117
+F +E A KAL
Sbjct: 436 KFSDKEHAKKAL 447
>gi|388856974|emb|CCF49394.1| related to pre-mrna splicing factor srp55 [Ustilago hordei]
Length = 259
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 75 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134
P R DI+ F YG + VRI F FV+FE +A A++ D + I V++
Sbjct: 11 PADVRRGDIEDLFRDYGRLYDVRIMGTFGFVEFEHHRDAEDAVKDFDGKNFMGERIVVQH 70
Query: 135 ALKDDSER-------DDRYDSPRRGGYGRHSP--YGRS 163
A + + R D YD RRGG GR P YG S
Sbjct: 71 AKQSERRRPEPAGYGSDPYD--RRGGGGREPPSRYGSS 106
>gi|451850002|gb|EMD63305.1| hypothetical protein COCSADRAFT_161812 [Cochliobolus sativus
ND90Pr]
Length = 489
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATK 115
P+ TLF+ N T E I+ F YGNV V + + F +V F +QEEAT
Sbjct: 333 PSNTLFIGNLSFDCTNET-IQEVFAEYGNVTRVSLPTDRDSGALKGFGYVDFGSQEEATA 391
Query: 116 ALESTDRSKLVDRVISVEYA 135
ALE+ + R + V++A
Sbjct: 392 ALEALHGQDVAGRPLRVDFA 411
>gi|208973274|ref|NP_001129183.1| 35 kDa SR repressor protein [Rattus norvegicus]
Length = 261
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V I R FA+VQFE +A
Sbjct: 8 PNTSLFVRNVADA-TRPEDLRREFGRYGPIVDVYIPLDFYSRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + +R + R I +++A D
Sbjct: 67 ALYNLNRKWVCGRQIEIQFAQGD 89
>gi|340370676|ref|XP_003383872.1| PREDICTED: hypothetical protein LOC100640864 [Amphimedon
queenslandica]
Length = 386
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 53 RDGSKSMAN--QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQ 110
RDG+ + ++ + +F+ N + + I+ F YG +L V + +++ FVQFET+
Sbjct: 17 RDGTNTSSDDPEMMQSRIFIGNLKTNKVTRKSIENRFSKYGKILGVSLHKSYGFVQFETR 76
Query: 111 EEATKALESTDRSKL----VDRVISVE 133
+ A KA+ ++ +L +D I+ E
Sbjct: 77 DIARKAVNEENKQELHGVKMDICIATE 103
>gi|74226809|dbj|BAE27050.1| unnamed protein product [Mus musculus]
Length = 339
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
RE+DI+R F YG +L + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 13 VREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKELCGERVIVEHA 70
>gi|341888855|gb|EGT44790.1| CBN-RSP-2 protein [Caenorhabditis brenneri]
gi|341896980|gb|EGT52915.1| hypothetical protein CAEBREN_32319 [Caenorhabditis brenneri]
Length = 283
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 65/147 (44%), Gaps = 24/147 (16%)
Query: 9 GFAFVYFEDDRDAADAIRGLDN-------IPFGYDRRRLSVEWAR---GERGRH----RD 54
GF FV F+D RDA DA+ L+ + + RR++ R G RGR R
Sbjct: 36 GFGFVDFQDQRDADDAVHDLNGKDLCGERVILEFPRRKVGYNEERSGSGYRGREPTFRRG 95
Query: 55 GSKSMANQ--RPTKTLFVINFDPIRTR--ERDIKRH-----FEPYGNVLHVRIRRNFAFV 105
G + +N+ RP T F + D + TR +DIK H EP + H R N A V
Sbjct: 96 GERQFSNRYSRPCSTRFRLVIDNLSTRFSWQDIKDHIRKLGIEPTYSEAHKR-NVNQALV 154
Query: 106 QFETQEEATKALESTDRSKLVDRVISV 132
F T ++ +A+ +L R +
Sbjct: 155 CFSTHDDLREAMNKLQGEELNGRKLKC 181
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 75 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134
P R +RD++ F YG ++ V ++ F FV F+ Q +A A+ + L + +E+
Sbjct: 10 PNRATDRDVEHFFRGYGKLVDVIMKNGFGFVDFQDQRDADDAVHDLNGKDLCGERVILEF 69
>gi|224967104|ref|NP_080775.3| arginine/serine-rich splicing factor 6 [Mus musculus]
gi|306922366|ref|NP_001014207.2| splicing factor, arginine/serine-rich 6 [Rattus norvegicus]
gi|74197209|dbj|BAE35148.1| unnamed protein product [Mus musculus]
gi|74228832|dbj|BAE21902.1| unnamed protein product [Mus musculus]
gi|148674361|gb|EDL06308.1| splicing factor, arginine/serine-rich 6 [Mus musculus]
gi|149043026|gb|EDL96600.1| similar to dJ862K6.2.2 (splicing factor, arginine/serine-rich 6
(SRP55-2)(isoform 2)), isoform CRA_a [Rattus norvegicus]
Length = 339
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
RE+DI+R F YG +L + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 13 VREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKELCGERVIVEHA 70
>gi|12836310|dbj|BAB23599.1| unnamed protein product [Mus musculus]
Length = 339
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
RE+DI+R F YG +L + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 13 VREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKELCGERVIVEHA 70
>gi|56270156|gb|AAH87121.1| Splicing factor, arginine/serine-rich 6 [Rattus norvegicus]
Length = 339
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
RE+DI+R F YG +L + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 13 VREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKELCGERVIVEHA 70
>gi|83766068|dbj|BAE56211.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 900
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 24/178 (13%)
Query: 29 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHF 87
D+ P+G D ++ E+ ER +G + ++ P + LFV N R +RD+ F
Sbjct: 385 DDAPWGPDVQKKYDEFLHDERVYVTEG---LWDRFPEGSRLFVGNLPTERVTKRDLFHIF 441
Query: 88 EPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYD 147
YG + + I++ + F+QF +AL+ + + R + +E +
Sbjct: 442 HKYGKLAQISIKQAYGFIQFLEAPACKQALDVEQGAVVRGRKVHLEIS------------ 489
Query: 148 SPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPA-------YDRYNGPVYDQRRSP 198
P+R +P S +P RR SP+Y RG P+ DRY+ P Y+ R P
Sbjct: 490 KPQRNTRPGPAPAEPSRAPPARRSRSPEYSRGGPPSSRNPRAPTDRYDRP-YESPRVP 546
>gi|302845893|ref|XP_002954484.1| hypothetical protein VOLCADRAFT_106420 [Volvox carteri f.
nagariensis]
gi|300260156|gb|EFJ44377.1| hypothetical protein VOLCADRAFT_106420 [Volvox carteri f.
nagariensis]
Length = 393
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 21/121 (17%)
Query: 64 PTKTLFV--INFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEAT 114
P KT+ V +++D ++ ++R FE +G + VRI R +AF++FE + +
Sbjct: 149 PYKTIIVARLSYD---VTDKKLRREFEEFGPIKRVRIVTDKQGKPRGYAFIEFEHKADMK 205
Query: 115 KALESTDRSKLVDRVISVEYALKDDSERDDRYDS--PRRGGYGRHSPYGRSPSPAYRRRP 172
+A ++ D K+ R + V D ER ++ PRR G G +P GR P P ++RP
Sbjct: 206 EAYKAADGKKIEGRRVLV------DVERGRTVENWKPRRLGGGLGAP-GREPKPPKKQRP 258
Query: 173 S 173
Sbjct: 259 G 259
>gi|146179448|ref|XP_001020597.2| hypothetical protein TTHERM_00219250 [Tetrahymena thermophila]
gi|146144570|gb|EAS00352.2| hypothetical protein TTHERM_00219250 [Tetrahymena thermophila
SB210]
Length = 256
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 12/113 (10%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNV--LHVRIRRNFAFVQFETQEEATKALESTDRSK 124
T+FV R RE D++ F YG + + R +R FAF+++ + +A +A+E D +
Sbjct: 12 TIFVGKLSS-RVREEDLRDEFRRYGRIRDIDFRRQRGFAFIEYSSSSDAKQAVEDMDGQR 70
Query: 125 LVDRVISVEYALKDDSERDDR--------YDSPRRGGYGRHSPYGRSPSPAYR 169
D I V+Y ++ S+R+ R Y+ R+G + G + YR
Sbjct: 71 FEDTRIVVQYK-ENRSDRNRRGPSTADVCYNCGRKGHWANECKEGNWNNRCYR 122
>gi|308466765|ref|XP_003095634.1| hypothetical protein CRE_13671 [Caenorhabditis remanei]
gi|308244633|gb|EFO88585.1| hypothetical protein CRE_13671 [Caenorhabditis remanei]
Length = 328
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 12/127 (9%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHR-------DGSKSMAN 61
FAF+ F+D RDA +A+R D + +D +RL VE+ RG+ R +GS+ N
Sbjct: 44 AFAFIQFDDRRDAKEAVRARDG--YEFDGKRLRVEFPRGQGPRGPGGRPTRDNGSRFGRN 101
Query: 62 QRPTKTL---FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALE 118
P K ++ P +DIK H + G + + + V+FE E+ A+
Sbjct: 102 GGPPKRSNYRLIVEGLPRSGSWQDIKDHLKQAGEICYANVHNGEGVVEFERYEDLEYAIR 161
Query: 119 STDRSKL 125
D +K
Sbjct: 162 KYDDTKF 168
Score = 36.6 bits (83), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR------NFAFVQFETQEEATKALEST 120
T++V N P RE++I+ F YG + ++ I+ FAF+QF+ + +A +A+ +
Sbjct: 5 TVYVGNL-PSNVREKEIEDIFHKYGEIRNIDIKSRSRDSPAFAFIQFDDRRDAKEAVRAR 63
Query: 121 DRSKLVDRVISVEY 134
D + + + VE+
Sbjct: 64 DGYEFDGKRLRVEF 77
>gi|432864638|ref|XP_004070386.1| PREDICTED: uncharacterized protein LOC101162527 isoform 2 [Oryzias
latipes]
Length = 373
Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
RE+DI+R F YG +L V ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 13 VREKDIQRFFSGYGKLLEVDMKNGYGFVEFEDNRDADDAVYELNGKELCGERVIVEHA 70
>gi|327285770|ref|XP_003227605.1| PREDICTED: LOW QUALITY PROTEIN: serine/arginine-rich splicing
factor 10-like [Anolis carolinensis]
Length = 262
Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
A + DR + R I +++A D
Sbjct: 67 AFHNLDRKWICGRQIEIQFAQGD 89
>gi|115461779|ref|NP_001054489.1| Os05g0120100 [Oryza sativa Japonica Group]
gi|113578040|dbj|BAF16403.1| Os05g0120100 [Oryza sativa Japonica Group]
gi|222630005|gb|EEE62137.1| hypothetical protein OsJ_16924 [Oryza sativa Japonica Group]
Length = 323
Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
RTR RD++ HF YG + V ++R++AF++F +A +A + D + I VE+A
Sbjct: 21 RTRSRDLEYHFSRYGRIREVELKRDYAFIEFSDPRDAEEARYNLDGRDVDGSRILVEFA 79
>gi|22022315|dbj|BAC06514.1| transformer-2b [Oryzias latipes]
Length = 288
Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 111
AN P L V + T ERD+K F YG + V I R FAFV FE
Sbjct: 116 ANPDPNACLGVFGLS-LYTTERDLKDVFSKYGPLADVSIVYDQQSRRSRGFAFVYFENTP 174
Query: 112 EATKALESTDRSKLVDRVISVEYAL 136
+A +A E + +L R I V++++
Sbjct: 175 DAKEAKEKANGMELDGRRIRVDFSI 199
>gi|308510478|ref|XP_003117422.1| CRE-RSP-2 protein [Caenorhabditis remanei]
gi|308242336|gb|EFO86288.1| CRE-RSP-2 protein [Caenorhabditis remanei]
Length = 281
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 66/153 (43%), Gaps = 24/153 (15%)
Query: 9 GFAFVYFEDDRDAADAIRGLDN-------IPFGYDRRRLSVEWAR---GERGRH----RD 54
GF FV F+D RDA DA+ L+ + + RR++ R G RGR R
Sbjct: 36 GFGFVDFQDQRDADDAVHDLNGKDLCGERVILEFPRRKVGYNEERSGGGYRGREPTFRRG 95
Query: 55 GSKSMANQ--RPTKTLFVINFDPIRTR--ERDIKRH-----FEPYGNVLHVRIRRNFAFV 105
G + +N+ RP T F + D + TR +DIK H EP + H R N A V
Sbjct: 96 GERQFSNRYSRPCSTRFRLVVDNLSTRYSWQDIKDHIRKLGIEPTYSEAHKR-NVNQALV 154
Query: 106 QFETQEEATKALESTDRSKLVDRVISVEYALKD 138
F T ++ A+ +L R + +D
Sbjct: 155 CFSTHDDLRDAMNKLQGEELNGRKLKCTDETRD 187
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 75 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134
P R +RD++ F YG ++ V ++ F FV F+ Q +A A+ + L + +E+
Sbjct: 10 PNRATDRDVEHFFRGYGKLVDVIMKNGFGFVDFQDQRDADDAVHDLNGKDLCGERVILEF 69
>gi|225714068|gb|ACO12880.1| Splicing factor, arginine/serine-rich 4 [Lepeophtheirus salmonis]
gi|290462833|gb|ADD24464.1| Splicing factor, arginine/serine-rich 4 [Lepeophtheirus salmonis]
Length = 233
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 137
TRERD+++ F+ YG + V ++ + FV+FE +A A++ D + + VE+A
Sbjct: 17 TRERDVEKFFKGYGKLREVALKNGYGFVEFEDHRDADDAVQDLDGKDMNGSRVRVEFARS 76
Query: 138 DDSERDDRY 146
+R+ RY
Sbjct: 77 PREKRNSRY 85
>gi|119195113|ref|XP_001248160.1| hypothetical protein CIMG_01931 [Coccidioides immitis RS]
Length = 864
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 61/145 (42%), Gaps = 21/145 (14%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRS 123
P LFV N R +RD+ F YG + + I+ + FVQF ALE+
Sbjct: 403 PGSRLFVGNLPSERVTKRDLFHLFHKYGKLAQISIKPAYGFVQFMDATSCRNALEAEQGG 462
Query: 124 KLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDY------G 177
+ R I +E + P+R R++P PS RR SPDY G
Sbjct: 463 VIRGRKIHLEIS------------KPQRS--SRNAPEPSKPS-GLRRSRSPDYSRNRDVG 507
Query: 178 RGRSPAYDRYNGPVYDQRRSPDHGR 202
RG +RY+ D++ S + GR
Sbjct: 508 RGGRLGSERYDRVAGDRKSSVNEGR 532
>gi|449488926|ref|XP_004174439.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein R-like [Taeniopygia guttata]
Length = 517
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + ++VEWA + MA K L
Sbjct: 290 GFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEVMAK---VKVL 343
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
FV N T E +++ F +G + V+ +++AFV FE + A KA+ +
Sbjct: 344 FVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMNEMN 395
>gi|15080592|gb|AAH12039.1| Splicing factor, arginine/serine-rich 6 [Mus musculus]
Length = 339
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
RE+DI+R F YG +L + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 13 VREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKELCGERVIVEHA 70
>gi|71996532|ref|NP_495309.3| Protein RSP-5, isoform b [Caenorhabditis elegans]
gi|351064336|emb|CCD72698.1| Protein RSP-5, isoform b [Caenorhabditis elegans]
Length = 166
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE-RGRHRDG 55
IS+ Y GFAFV FED RDA DA LD RL VE ARG+ RG R G
Sbjct: 31 ISMKY-GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMARGKPRGNDRHG 83
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 75 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121
P RERD++R + YG + ++ ++ FAFV FE +A A D
Sbjct: 10 PYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLD 56
>gi|218200049|gb|EEC82476.1| hypothetical protein OsI_26921 [Oryza sativa Indica Group]
Length = 271
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEAT 114
R T +L V+N RT D+ FE YG V+ + I R FAFV+++ ++EA
Sbjct: 13 RDTYSLLVLNIT-FRTTADDLSPLFEKYGEVVDIYIPRDRRTGDSRGFAFVRYKYEDEAQ 71
Query: 115 KALESTDRSKLVDRVISVEYA 135
KA++ D + R I V++A
Sbjct: 72 KAVDRLDGRVVDGREIMVQFA 92
>gi|367038789|ref|XP_003649775.1| hypothetical protein THITE_2108702 [Thielavia terrestris NRRL 8126]
gi|346997036|gb|AEO63439.1| hypothetical protein THITE_2108702 [Thielavia terrestris NRRL 8126]
Length = 325
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 15/99 (15%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATK 115
P LFV P R E +I R FE YG V +I R+ F FV+ T E+A
Sbjct: 69 PGSNLFVTGIHP-RIEESEITRLFEKYGEVEKCQIMRDPHSGESRGFGFVKMMTSEQADA 127
Query: 116 ALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGY 154
A+E + R +++E A R R +P G Y
Sbjct: 128 AMEGLRGEIIEGRTLNIEKA------RRSRPRTPTPGKY 160
>gi|326482144|gb|EGE06154.1| pre-mRNA splicing factor [Trichophyton equinum CBS 127.97]
Length = 304
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 13/155 (8%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRH--RDGSKSMANQRPTK 66
GF F+ +ED DA D + F + RL+V++ARG R R + A RP +
Sbjct: 43 GFGFIEYEDAMDAKDVVPAFHGTDFKGE--RLTVQFARGPRRREPFPGPPERSAAPRPRR 100
Query: 67 TLFVINFDPI-RTRERDIKRHFEPYG-NVLH--VRIRRNFAFVQFETQEEATKALESTDR 122
T++ + + T +D+K G +V++ R R FV+FE + A+E D
Sbjct: 101 TIYRMQITGLPETSWQDLKDFARQSGLDVVYSETRDRDGKGFVEFENGNDLRTAVEKLDG 160
Query: 123 SKL----VDRVISVEYALKDDSERDD-RYDSPRRG 152
+ V ++ ++D RD R SPRRG
Sbjct: 161 TDFKGSRVTCTADIQPPMEDRVPRDPYRSRSPRRG 195
>gi|307219223|ref|NP_001182527.1| splicing factor, arginine/serine-rich 13B [Sus scrofa]
Length = 261
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V I R FA+VQFE +A
Sbjct: 8 PNTSLFVRNVADA-TRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + +R + R I +++A D
Sbjct: 67 ALYNLNRKWVCGRQIEIQFAQGD 89
>gi|296084065|emb|CBI24453.3| unnamed protein product [Vitis vinifera]
Length = 260
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATK 115
P TL+V R ER ++ HF G V RI R FAFV ET E+A +
Sbjct: 89 PGNTLYVTGLS-TRVTERALEDHFSREGKVASCFLVMEPRTRISRGFAFVTMETVEDANR 147
Query: 116 ALESTDRSKLVDRVISVE 133
++ ++S L R I+VE
Sbjct: 148 CIKHLNQSVLEGRYITVE 165
>gi|156394189|ref|XP_001636709.1| predicted protein [Nematostella vectensis]
gi|156223814|gb|EDO44646.1| predicted protein [Nematostella vectensis]
Length = 223
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 18/120 (15%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG---RHRDGSKSMANQRPTK 66
FAFV FED RDA DA++G D F D R+ VE+ RG G R D ++ PT
Sbjct: 50 FAFVEFEDPRDAEDAVKGRDGHEF--DGYRIRVEFPRGGSGPPPRRSDFRVQVSGLPPTG 107
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 125
+ +D+K H G+VL + ++ V+F ++ A+ + D SK
Sbjct: 108 SW------------QDLKDHMREAGDVLFTDVFKDGTGVVEFARYDDMKFAIRNLDDSKF 155
>gi|409081762|gb|EKM82121.1| hypothetical protein AGABI1DRAFT_112242 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426198598|gb|EKV48524.1| hypothetical protein AGABI2DRAFT_192114 [Agaricus bisporus var.
bisporus H97]
Length = 275
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATK 115
P+ L V IRT ERD+ F +G V V I R F F++ T +EA +
Sbjct: 80 PSSVLGVFGLS-IRTVERDLDDEFSRFGRVEKVTIVYDQRSDRSRGFGFIKMSTVDEAAR 138
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
++ + +L R I V+Y++ D
Sbjct: 139 CIQELNGVELNGRRIRVDYSVTD 161
>gi|255537535|ref|XP_002509834.1| Arginine/serine-rich-splicing factor, putative [Ricinus communis]
gi|223549733|gb|EEF51221.1| Arginine/serine-rich-splicing factor, putative [Ricinus communis]
Length = 204
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATK 115
P L+V R D++++F G VL + R FAFV ET E+A +
Sbjct: 45 PGNNLYVTGLS-TRVTTGDLEKYFGKEGKVLECHLVTDPRTRESRGFAFVTMETLEDAER 103
Query: 116 ALESTDRSKLVDRVISVEYA 135
++ +RS L R+I+VE A
Sbjct: 104 CVKYLNRSVLEGRLITVEKA 123
>gi|242782227|ref|XP_002479958.1| electron transfer flavoprotein-ubiquinone oxidoreductase [Talaromyces
stipitatus ATCC 10500]
gi|218720105|gb|EED19524.1| electron transfer flavoprotein-ubiquinone oxidoreductase [Talaromyces
stipitatus ATCC 10500]
Length = 1100
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 78/183 (42%), Gaps = 22/183 (12%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKS--MANQRPTK 66
GF F+ +ED DA D + F RL+V++ARG R + S A RP +
Sbjct: 838 GFGFIEYEDAMDARDVVPAFHGSDF--KGERLTVQFARGPRHKETFNGPSDRPAAPRPRR 895
Query: 67 TLFVINFD--PIRTRERDIKRHFEPYG-NVLH---VRIRRNFAFVQFETQEEATKALEST 120
T+F + P T +D+K G +V++ R R FV+FE+ + A+E
Sbjct: 896 TVFRMQVSGLPTETSWQDLKDFARQSGLDVVYSETTRERDGRGFVEFESHADLKTAVEKL 955
Query: 121 DRSKLVDRVISVEYALKDDSERDDRYD-----SPRRGGYG-------RHSPYGRSPSPAY 168
D +L ++ ++ ER D SP R GY R P G SP Y
Sbjct: 956 DGRELKGSQVTCVADVQPAEERAPYRDPYRSRSPPRRGYPPMDDYDRRGPPRGYSPRQHY 1015
Query: 169 RRR 171
R R
Sbjct: 1016 RER 1018
>gi|452848411|gb|EME50343.1| hypothetical protein DOTSEDRAFT_69017 [Dothistroma septosporum
NZE10]
Length = 516
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 22/146 (15%)
Query: 9 GFAFVYFEDDRDAADAIRG-----LDN----IPFGYDRRRLSVEWARGERGRHRDGSKSM 59
G+ +V FE DAA A+ LDN + G R + + +R R
Sbjct: 295 GYGYVEFESADDAAKALEARHGYTLDNRELRVDLGTPRAQRNDGQTPQQRSNDRQKQYGD 354
Query: 60 ANQRPTKTLFV--INFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFET 109
+P+ TLFV I+FD + ++ F+ YG++ VR+ + F +V+F +
Sbjct: 355 TPSQPSATLFVGNISFDATQDMVTEV---FQEYGSINAVRLPTDRETGAPKGFGYVEFSS 411
Query: 110 QEEATKALESTDRSKLVDRVISVEYA 135
EEA A+E+ + R I ++Y+
Sbjct: 412 IEEAKSAMENLTGVDIAGRPIRLDYS 437
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 17/122 (13%)
Query: 56 SKSMANQRPTKT--LFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFV 105
SK + P T LFV N E + R FE +G + VR+ + + +V
Sbjct: 241 SKKTKTEDPAATGNLFVGNLS-WNVDEEWLTREFEEFGAIKAVRVITDRDSGRSKGYGYV 299
Query: 106 QFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYD--SPRRGGYGRHSPYGRS 163
+FE+ ++A KALE+ L +R + V+ + R R D +P++ R YG +
Sbjct: 300 EFESADDAAKALEARHGYTLDNRELRVDLG----TPRAQRNDGQTPQQRSNDRQKQYGDT 355
Query: 164 PS 165
PS
Sbjct: 356 PS 357
>gi|345561947|gb|EGX45019.1| hypothetical protein AOL_s00173g120 [Arthrobotrys oligospora ATCC
24927]
Length = 732
Score = 43.9 bits (102), Expect = 0.057, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 31/157 (19%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQ------ 62
GF FV F D DA A++ + F + R + VE A+ RHRDG K
Sbjct: 81 GFGFVTFTDPADAVKAVQEFNGKVF--EGRHIKVEIAQA---RHRDGDKPAITSTTAVPV 135
Query: 63 -RPTKTLFVINFDP---IRTRERDIKR------HFEPYGNVLHVRIRRN----------F 102
+P K + + +P +R +K+ +F +G V V I R F
Sbjct: 136 GKPAKDVDIKKRNPRLIVRNLPWSVKKPEQLTPYFTKFGKVKEVIIPRKDGSKFGPMAGF 195
Query: 103 AFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 139
AFV +E A KA+E+ + +++ R ++V++A++ +
Sbjct: 196 AFVTLRKEESARKAIEAINGTEIEGRTVAVDWAVEKN 232
>gi|213410497|ref|XP_002176018.1| predicted protein [Schizosaccharomyces japonicus yFS275]
gi|212004065|gb|EEB09725.1| predicted protein [Schizosaccharomyces japonicus yFS275]
Length = 198
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 9/100 (9%)
Query: 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEA 113
N RP TL V F T E + + FE +G ++ I R +AFV+FE + +A
Sbjct: 7 NYRPGFTLHVRGFSESMTAEA-LGQEFEKFGRIVRCDIPVFRTPATRRYAFVEFEERRDA 65
Query: 114 TKALESTDRSKLVDRVISVEYA-LKDDSERDDRYDSPRRG 152
A R++L D ++ VE+A L+D +R DR+ RG
Sbjct: 66 EAAHSRMHRTRLNDDILHVEWARLRDRFDRGDRFQQRPRG 105
>gi|125550625|gb|EAY96334.1| hypothetical protein OsI_18237 [Oryza sativa Indica Group]
Length = 331
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
RTR RD++ HF YG + V ++R++AF++F +A +A + D + I VE+A
Sbjct: 29 RTRSRDLEYHFSRYGRIREVELKRDYAFIEFSDPRDAEEARYNLDGRDVDGSRILVEFA 87
>gi|41055454|ref|NP_956710.1| transformer-2 protein homolog alpha [Danio rerio]
gi|32451924|gb|AAH54632.1| Transformer-2 alpha [Danio rerio]
Length = 297
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 111
AN P L V + T ERD++ F YG++ V + R FAFV FE +
Sbjct: 129 ANPDPNTCLGVFGL-SLYTTERDLREVFSRYGSLAGVNVVYDQRTGRSRGFAFVYFEHID 187
Query: 112 EATKALESTDRSKLVDRVISVEYAL 136
+A +A+E + +L R I V+Y++
Sbjct: 188 DAKEAMERANGMELDGRRIRVDYSI 212
>gi|270015083|gb|EFA11531.1| hypothetical protein TcasGA2_TC016051 [Tribolium castaneum]
Length = 303
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
R RERDI++ F YG + V ++ FAFV+F+ +A A+ + +L+ +SVE A
Sbjct: 13 RVRERDIEKFFRKYGRIKEVAMKNGFAFVEFDDYRDADDAVYELNGKELLGERVSVERA 71
>gi|67537678|ref|XP_662613.1| hypothetical protein AN5009.2 [Aspergillus nidulans FGSC A4]
gi|40741897|gb|EAA61087.1| hypothetical protein AN5009.2 [Aspergillus nidulans FGSC A4]
gi|259482115|tpe|CBF76287.1| TPA: RNA-binding protein (Nab3), putative (AFU_orthologue;
AFUA_3G09770) [Aspergillus nidulans FGSC A4]
Length = 888
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 12/112 (10%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFV N R +RD+ F YG + + I++ + F+QF +ALE + +
Sbjct: 415 LFVGNLPTERVTKRDLFHIFHSYGKLAQISIKQAYGFIQFLEASSCKRALEGEQGAIVRG 474
Query: 128 RVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRG 179
R + +E + P+R +P S + RR SPDYGRG
Sbjct: 475 RKVHLEIS------------KPQRNTRPAPAPSEPSRVTSARRSRSPDYGRG 514
>gi|409082207|gb|EKM82565.1| hypothetical protein AGABI1DRAFT_111169 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426200034|gb|EKV49958.1| hypothetical protein AGABI2DRAFT_190388 [Agaricus bisporus var.
bisporus H97]
Length = 289
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 35/61 (57%)
Query: 75 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134
P R D+++ F+ +G ++ R+ F FV+FE+ ++A +A+ + + + I VE+
Sbjct: 11 PPDARSEDVQKFFDGFGRIIDCRVMTGFGFVEFESPKDAEEAVHTFNGKSFMGANIVVEF 70
Query: 135 A 135
A
Sbjct: 71 A 71
>gi|291404036|ref|XP_002718366.1| PREDICTED: FUS interacting protein (serine-arginine rich) 1
[Oryctolagus cuniculus]
Length = 182
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V + R FA+VQFE +A
Sbjct: 8 PNTSLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPIDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + DR + I +++A D
Sbjct: 67 ALHNLDRKWICGHQIEIQFAQGD 89
>gi|392862596|gb|EAS36749.2| RNA-binding protein [Coccidioides immitis RS]
Length = 870
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 61/145 (42%), Gaps = 15/145 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRS 123
P LFV N R +RD+ F YG + + I+ + FVQF ALE+
Sbjct: 403 PGSRLFVGNLPSERVTKRDLFHLFHKYGKLAQISIKPAYGFVQFMDATSCRNALEAEQGG 462
Query: 124 KLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDY------G 177
+ R I + + D P+R R++P PS RR SPDY G
Sbjct: 463 VIRGRKIRLLTTV------DLEISKPQRS--SRNAPEPSKPS-GLRRSRSPDYSRNRDVG 513
Query: 178 RGRSPAYDRYNGPVYDQRRSPDHGR 202
RG +RY+ D++ S + GR
Sbjct: 514 RGGRLGSERYDRVAGDRKSSVNEGR 538
>gi|255557727|ref|XP_002519893.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
gi|223540939|gb|EEF42497.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
Length = 264
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 21/135 (15%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRD--------------- 54
+ FV FE+ RDA DAIRG D + +D RL VE A G RG+
Sbjct: 47 YCFVEFENTRDAEDAIRGRDG--YNFDGCRLRVELAHGGRGQSSSDRRGGYGGSGGGGSG 104
Query: 55 GSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQ 110
R ++ ++ P +D+K H G+V + R+ F V +
Sbjct: 105 SGGRYCISRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSDGTFGIVDYTNY 164
Query: 111 EEATKALESTDRSKL 125
E+ A+ D ++
Sbjct: 165 EDMKYAIRKLDDTEF 179
>gi|393245975|gb|EJD53484.1| RNA-binding domain-containing protein [Auricularia delicata
TFB-10046 SS5]
Length = 288
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEE 112
N P+ L V IRT ERD+ F YG V V I R F F++ T E+
Sbjct: 82 NPNPSSVLGVFGLS-IRTTERDLDEEFARYGAVEKVTIVYDQRSDRSRGFGFIRMATVED 140
Query: 113 ATKALESTDRSKLVDRVISVEYALKD 138
A + ++ + +L R I V++++ D
Sbjct: 141 AQRCIDKLNGIELNGRRIRVDFSVTD 166
>gi|448878358|gb|AGE46142.1| arginine/serine-rich splicing factor SR30 transcript I [Sorghum
bicolor]
Length = 255
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG--------RHRDGSKSMA 60
GFAFV FED DA DAI G D + +D RL VE A G RG + + A
Sbjct: 46 GFAFVEFEDPHDAEDAIYGRDG--YNFDGHRLRVELAHGGRGPSSFDRSSSYSSAGQRGA 103
Query: 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKA 116
++R + V P +D+K H G+V + R + E+ A
Sbjct: 104 SKRSDYRVMVTGL-PSSASWQDLKDHMRRAGDVCFTDVYREAGATIGIADYTNYEDMKHA 162
Query: 117 LESTDRSKL 125
+ D S+
Sbjct: 163 IRKLDDSEF 171
>gi|393216709|gb|EJD02199.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 270
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 7/131 (5%)
Query: 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRD-GSKSMA-NQRP 64
GF FV FE RDA DA+R + PF + VE+A+ RGR D +S A +RP
Sbjct: 35 MTGFGFVEFESSRDAEDALRDIRGKPFLGS--NIVVEFAKENRGRRNDYEDRSFAPRRRP 92
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNF---AFVQFETQEEATKALESTD 121
++ T +D+K G+V I R +++ ++++A +A++ D
Sbjct: 93 AGIRISVDNISKDTSWQDLKDFGREAGSVSFADIDREVPGRGILEYASRDDAEQAVKELD 152
Query: 122 RSKLVDRVISV 132
+L + + V
Sbjct: 153 GKELRGQPVHV 163
Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 75 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134
P TR ++ ++F+ +G ++ VR+ F FV+FE+ +A AL + I VE+
Sbjct: 11 PPDTRTDEVTKYFDGFGPLVDVRVMTGFGFVEFESSRDAEDALRDIRGKPFLGSNIVVEF 70
Query: 135 ALKDDSERDDRYD---SPRR 151
A ++ R+D D +PRR
Sbjct: 71 AKENRGRRNDYEDRSFAPRR 90
>gi|357441751|ref|XP_003591153.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
gi|355480201|gb|AES61404.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
Length = 290
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 55/130 (42%), Gaps = 15/130 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG---------RHRDGSKSM 59
G+AFV FED RDA DAI D + +D RL VE A G RG RH S S
Sbjct: 77 GYAFVEFEDARDAQDAIYYRDG--YDFDGYRLLVELAHGGRGSSSSVDRYSRHSGRSGSR 134
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATK 115
R + ++ P +D+K H G+V ++ R V + ++
Sbjct: 135 GVSRRSDYRVLVTGLPPSASWQDLKDHMRKAGHVCFSQVFRERGGLTGIVDYTNYDDVKY 194
Query: 116 ALESTDRSKL 125
A+ D S+
Sbjct: 195 AIRKLDDSEF 204
>gi|320038617|gb|EFW20552.1| pre-RNA splicing factor Srp2 [Coccidioides posadasii str. Silveira]
gi|392870837|gb|EJB12074.1| pre-RNA splicing factor Srp2 [Coccidioides immitis RS]
Length = 302
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 81/185 (43%), Gaps = 20/185 (10%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHR-DGSKSMANQ-RPT 65
+GF F+ +ED DA D + F RL+V++ARG R + G +N RP
Sbjct: 42 SGFGFIEYEDALDARDVVPAYHGTDF--KGSRLTVQFARGPRHKETFSGPSDRSNAPRPR 99
Query: 66 KTLFVINFDPI-RTRERDIKRHFEPYG-NVLHVRIRRNF---AFVQFETQEEATKALEST 120
+T + + + T +D+K G +V++ R+ FV+FET + A+E
Sbjct: 100 RTPYRMQISGLPETSWQDLKDFARQSGLDVVYSETLRDHEGRGFVEFETGADLKTAIEKL 159
Query: 121 DRSKLVDRVISVEYALK--DDSERDDRYDS---PRRGGY------GRHSPYGRSPSPAYR 169
D + ++ ++ DD D Y S RRGGY R P G SP YR
Sbjct: 160 DGREFKGSRVTCTQDIQAPDDRPVRDPYRSRSPVRRGGYPPMDDYDRRPPRGYSPRGHYR 219
Query: 170 RRPSP 174
R P
Sbjct: 220 ERSPP 224
>gi|115473447|ref|NP_001060322.1| Os07g0623300 [Oryza sativa Japonica Group]
gi|33146621|dbj|BAC79909.1| putative splicing factor, arginine/serine-rich 2 (Splicing factor
SC35) [Oryza sativa Japonica Group]
gi|113611858|dbj|BAF22236.1| Os07g0623300 [Oryza sativa Japonica Group]
gi|215687327|dbj|BAG91873.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222637485|gb|EEE67617.1| hypothetical protein OsJ_25178 [Oryza sativa Japonica Group]
Length = 275
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEAT 114
R T +L V+N RT D+ FE YG V+ + I R FAFV+++ ++EA
Sbjct: 13 RDTYSLLVLNIT-FRTTADDLSPLFEKYGEVVDIYIPRDRRTGDSRGFAFVRYKYEDEAQ 71
Query: 115 KALESTDRSKLVDRVISVEYA 135
KA++ D + R I V++A
Sbjct: 72 KAVDRLDGRVVDGREIMVQFA 92
>gi|410916817|ref|XP_003971883.1| PREDICTED: serine/arginine-rich splicing factor 5-like [Takifugu
rubripes]
Length = 310
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ P RE+D++R F+ YG + + +++ F FV+F+ +A A+ D +L +
Sbjct: 6 IFIGRLSPT-AREKDVERFFKGYGRIRDIDLKKGFGFVEFDDPRDAEDAVYELDGKELCN 64
Query: 128 RVISVEYA 135
+++E+A
Sbjct: 65 ERVTIEHA 72
>gi|429861690|gb|ELA36363.1| RNA-binding protein [Colletotrichum gloeosporioides Nara gc5]
Length = 755
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 55 GSKSMANQRPTKTL--FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEE 112
GS+S+++ RP + F N R +RD+ F YG + + ++ + FVQ+ E+
Sbjct: 293 GSRSLSSGRPDGAIDFFSGNLSSERVSKRDVFEIFCKYGQLAQISLKSAYGFVQYHNLED 352
Query: 113 ATKALESTDRSKLVDRVISVEYA 135
A A+ + ++ R I +EY+
Sbjct: 353 AQAAMNNLQGIEIKGRKIHLEYS 375
>gi|449329151|gb|AGE95425.1| arginine/serine rich pre-mRNA splicing factor [Encephalitozoon
cuniculi]
Length = 301
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 72/162 (44%), Gaps = 23/162 (14%)
Query: 75 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV-ISVE 133
P E IK +F +G V V ++ + F+ F+++ T+ L R+ +D ISVE
Sbjct: 9 PNHVSEEQIKEYFGQFGEVTDVSLKGTYGFLNFDSEGSITRVL--NQRTHSIDGAPISVE 66
Query: 134 YALK----DDSERDDRYDSPRRGGYG--------RHSPY------GRSPSPAYRRRPSPD 175
A D E DRY RGGY R++PY RSP Y R S
Sbjct: 67 RANGRKRPLDGEYHDRYMDMGRGGYSPHRDYRGFRNAPYPPMRYESRSPG-RYDPRFSDR 125
Query: 176 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPD 217
YG GRSP Y + + D +RS D + + P++ R D
Sbjct: 126 YG-GRSPEYRGDSFRMGDPQRSRDFCEYCNACPIHGMRDMMD 166
>gi|19173684|ref|NP_597487.1| ARGININE/SERINE RICH PRE-mRNA SPLICING FACTOR [Encephalitozoon
cuniculi GB-M1]
gi|74697561|sp|Q8SRU2.1|SFR_ENCCU RecName: Full=Probable splicing factor ECU05_1440; AltName:
Full=Pre-mRNA-splicing factor ECU05_1440
gi|19170890|emb|CAD26664.1| ARGININE/SERINE RICH PRE-mRNA SPLICING FACTOR [Encephalitozoon
cuniculi GB-M1]
Length = 301
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 72/162 (44%), Gaps = 23/162 (14%)
Query: 75 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV-ISVE 133
P E IK +F +G V V ++ + F+ F+++ T+ L R+ +D ISVE
Sbjct: 9 PNHVSEEQIKEYFGQFGEVTDVSLKGTYGFLNFDSEGSITRVL--NQRTHSIDGAPISVE 66
Query: 134 YALK----DDSERDDRYDSPRRGGYG--------RHSPY------GRSPSPAYRRRPSPD 175
A D E DRY RGGY R++PY RSP Y R S
Sbjct: 67 RANGRKRPLDGEYHDRYMDMGRGGYSPHRDYRGFRNAPYPPMRYESRSPG-RYDPRFSDR 125
Query: 176 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPD 217
YG GRSP Y + + D +RS D + + P++ R D
Sbjct: 126 YG-GRSPEYRGDSFRMGDPQRSRDFCEYCNACPIHGMRDMMD 166
>gi|66816589|ref|XP_642304.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|74997199|sp|Q54Y98.1|TRA2_DICDI RecName: Full=Transformer-2 protein homolog
gi|60470367|gb|EAL68347.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 326
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATK 115
P+ L V P +T ERD+K F +G + HV + + F FV FE +E+A +
Sbjct: 111 PSNVLGVFGLAP-QTEERDLKDEFSRFGKIDHVDLIMDRKTGRSKCFGFVYFENKEDAVR 169
Query: 116 ALESTDRSKLVDRVISVEYA 135
A E +L + I +++
Sbjct: 170 AKEECQDLQLHGKSIRTDFS 189
>gi|410215040|gb|JAA04739.1| serine/arginine-rich splicing factor 6 [Pan troglodytes]
gi|410302392|gb|JAA29796.1| serine/arginine-rich splicing factor 6 [Pan troglodytes]
gi|410360346|gb|JAA44682.1| serine/arginine-rich splicing factor 6 [Pan troglodytes]
Length = 344
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
RE+DI+R F YG +L V ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 13 VREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHA 70
>gi|189203851|ref|XP_001938261.1| nuclear localization sequence-binding protein [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985360|gb|EDU50848.1| nuclear localization sequence-binding protein [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 475
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATK 115
P+ TLF+ N I+ F YG++ V + + F +V F +Q+EAT
Sbjct: 321 PSNTLFLGNVS-FECSNESIQEVFAEYGSITRVSLPTDRDTGALKGFGYVDFSSQQEATA 379
Query: 116 ALESTDRSKLVDRVISVEYA 135
ALE+ + + R I ++YA
Sbjct: 380 ALEALNGQDIGGRAIRIDYA 399
>gi|393215487|gb|EJD00978.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 247
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 59 MANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQ 110
+ N +P+ L V IR+ ERD+ F +G V V I R F F++ +
Sbjct: 27 VQNPQPSNVLGVFGLS-IRSTERDLDEEFSRFGRVEKVTIVYDQRSDRSRGFGFIKLASV 85
Query: 111 EEATKALESTDRSKLVDRVISVEYALKD 138
E+A + ++ + +L R I V+Y++ +
Sbjct: 86 EDAARCIQELNGVELNGRRIRVDYSVTE 113
>gi|189233695|ref|XP_001812208.1| PREDICTED: similar to B52 CG10851-PA [Tribolium castaneum]
Length = 300
Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
R RERDI++ F YG + V ++ FAFV+F+ +A A+ + +L+ +SVE A
Sbjct: 13 RVRERDIEKFFRKYGRIKEVAMKNGFAFVEFDDYRDADDAVYELNGKELLGERVSVERA 71
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 63/141 (44%), Gaps = 22/141 (15%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE-------RGRHRDGSKSMAN 61
GFAFV F+D RDA DA+ L+ + R+SVE ARG RG G
Sbjct: 37 GFAFVEFDDYRDADDAVYELNGKELLGE--RVSVERARGTPRGCDQWRGSGGRGYGPPRG 94
Query: 62 QR------PTKT---LFVINFDPIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFET 109
+ PT+T L V N R +D+K + G V + + RRN V+F +
Sbjct: 95 RSRDKYGPPTRTEYRLIVENLSS-RVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFAS 153
Query: 110 QEEATKALESTDRSKLVDRVI 130
+ A++ D ++L R I
Sbjct: 154 YSDMKNAIDKLDDTELNGRRI 174
>gi|402882500|ref|XP_003904778.1| PREDICTED: serine/arginine-rich splicing factor 6 [Papio anubis]
gi|380815566|gb|AFE79657.1| serine/arginine-rich splicing factor 6 [Macaca mulatta]
gi|380815568|gb|AFE79658.1| serine/arginine-rich splicing factor 6 [Macaca mulatta]
gi|383420733|gb|AFH33580.1| serine/arginine-rich splicing factor 6 [Macaca mulatta]
gi|383420735|gb|AFH33581.1| serine/arginine-rich splicing factor 6 [Macaca mulatta]
gi|384948770|gb|AFI37990.1| serine/arginine-rich splicing factor 6 [Macaca mulatta]
gi|384948772|gb|AFI37991.1| serine/arginine-rich splicing factor 6 [Macaca mulatta]
Length = 343
Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
RE+DI+R F YG +L V ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 13 VREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHA 70
>gi|334327169|ref|XP_003340840.1| PREDICTED: LOW QUALITY PROTEIN: serine/arginine-rich splicing
factor 9-like [Monodelphis domestica]
Length = 220
Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
A FAFV FED RDA DAI G + +G + RL VE R G G ++R
Sbjct: 54 APFAFVRFEDPRDAEDAIYGRNGYDYG--QCRLRVELPRNPGGGGPRGRTGPPSRRSEFR 111
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 125
+ V P + + D+K H G V + ++++ V+F +E+ AL D SK
Sbjct: 112 VLVSGLPPSGSWQ-DLKDHMREAGGVCYADVQKDGMGVVEFLRKEDMEYALRRLDDSKF 169
>gi|390462611|ref|XP_003732879.1| PREDICTED: LOW QUALITY PROTEIN: serine/arginine-rich splicing
factor 6-like [Callithrix jacchus]
Length = 344
Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
RE+DI+R F YG +L V ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 13 VREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHA 70
>gi|30584231|gb|AAP36364.1| Homo sapiens splicing factor, arginine/serine-rich 6 [synthetic
construct]
gi|61371415|gb|AAX43663.1| splicing factor arginine/serine-rich 6 [synthetic construct]
gi|61371422|gb|AAX43664.1| splicing factor arginine/serine-rich 6 [synthetic construct]
Length = 345
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
RE+DI+R F YG +L V ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 13 VREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHA 70
>gi|56118384|ref|NP_001007946.1| serine/arginine-rich splicing factor 12 [Xenopus (Silurana)
tropicalis]
gi|51513232|gb|AAH80452.1| serine-arginine repressor protein (35 kDa) [Xenopus (Silurana)
tropicalis]
gi|89272962|emb|CAJ83214.1| serine-arginine repressor protein (35 kDa) [Xenopus (Silurana)
tropicalis]
Length = 253
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG ++ V R R FA++QFE +A
Sbjct: 8 PNTSLFVRNVADA-TRPEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYIQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + +R + R I +++A D
Sbjct: 67 ALYNLNRKWVCGRQIEIQFAQGD 89
>gi|342878568|gb|EGU79899.1| hypothetical protein FOXB_09574 [Fusarium oxysporum Fo5176]
Length = 819
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 83/193 (43%), Gaps = 24/193 (12%)
Query: 56 SKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATK 115
S S A++ N + ++D+ F +G + + ++ + FVQ+ + EE +
Sbjct: 363 SASGASKNGAHIFATGNLSSDKVSKQDVFDLFHRFGRIAQISLKSAYGFVQYHSIEEGQR 422
Query: 116 ALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGY---GRHSP-YGRSPSPAYR-- 169
A+++ ++ R I +E + D + D+ SP R GR + G YR
Sbjct: 423 AMDNLQGIEIKGRRIHLEVSRAQDKSKKDKTRSPDRNKTRDSGRRNERQGHQTRDDYRSS 482
Query: 170 RRPSP---DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNF 226
R SP DYGR S DR YD R GR RS RSP YGRN N
Sbjct: 483 RGHSPHRNDYGRDESYGRDRG---FYDNSR----GRARS--------RSPGYGRNGKDNN 527
Query: 227 GRYRSRSPVRRSR 239
R RS SP R R
Sbjct: 528 YRRRSPSPYGRPR 540
>gi|431904517|gb|ELK09900.1| Splicing factor, arginine/serine-rich 5 [Pteropus alecto]
Length = 223
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEY 134
+++E+
Sbjct: 65 ERVTIEH 71
>gi|403290688|ref|XP_003936440.1| PREDICTED: serine/arginine-rich splicing factor 6 [Saimiri
boliviensis boliviensis]
Length = 344
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
RE+DI+R F YG +L V ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 13 VREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHA 70
>gi|313212059|emb|CBY17785.1| unnamed protein product [Oikopleura dioica]
Length = 259
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
T+F+ R R++DI+ F+ YG V +R+R + FV F+ + +A A++ D S L
Sbjct: 6 TVFIGGLSD-RARDKDIEDFFDKYGKVTQIRLRDRYGFVDFDDRRDAEDAIKDLDGSSLC 64
Query: 127 DRVISVEYA 135
+ +E A
Sbjct: 65 GERVRLELA 73
>gi|255579604|ref|XP_002530643.1| Arginine/serine-rich-splicing factor, putative [Ricinus communis]
gi|223529816|gb|EEF31751.1| Arginine/serine-rich-splicing factor, putative [Ricinus communis]
Length = 248
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATK 115
P TL+V R ER ++ HF G V RI R FAFV + E+A +
Sbjct: 72 PGNTLYVTGLS-TRVTERGLEEHFAKEGKVASCFLVVEPRTRISRGFAFVTMDNVEDANR 130
Query: 116 ALESTDRSKLVDRVISVE 133
++ ++S L R I+VE
Sbjct: 131 CVKYLNQSVLEGRYITVE 148
>gi|344282129|ref|XP_003412827.1| PREDICTED: transformer-2 protein homolog beta-like [Loxodonta
africana]
Length = 390
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 111
AN P L V + T ERD++ F YG + V I R FAFV FE +
Sbjct: 206 ANPDPNCCLGVFGLS-LYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVD 264
Query: 112 EATKALESTDRSKLVDRVISVEYAL 136
+A +A E + +L R I V++++
Sbjct: 265 DAKEAKERANGMELDGRRIRVDFSI 289
>gi|449478880|ref|XP_004155443.1| PREDICTED: uncharacterized protein LOC101223695 [Cucumis sativus]
Length = 283
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKA 116
T +L V+N RT D+ F YG V+ + I R FAFV+++ +EA KA
Sbjct: 15 TYSLLVLNI-TFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKA 73
Query: 117 LESTDRSKLVDRVISVEYA 135
+E D + + R I+V++A
Sbjct: 74 VERLDGTMVDGREITVQFA 92
>gi|395829006|ref|XP_003787652.1| PREDICTED: serine/arginine-rich splicing factor 6 [Otolemur
garnettii]
Length = 345
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
RE+DI+R F YG +L V ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 13 VREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHA 70
>gi|331218002|ref|XP_003321679.1| hypothetical protein PGTG_03216 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309300669|gb|EFP77260.1| hypothetical protein PGTG_03216 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 217
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 45 ARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HV 96
A G + R S + N P L V ++ +RD++ F YG V H
Sbjct: 15 ANGSQTTDRGRSSDVVN--PGNNLHVSGIS-LKADDRDLEELFSKYGTVTKSQLMRDPHT 71
Query: 97 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
R R F FV ET ++A A+ S + ++ + + +SVE A
Sbjct: 72 REIRGFGFVTMETSDQAELAISSLNGTEFLGKTLSVEKA 110
>gi|147904116|ref|NP_001079647.1| serine/arginine-rich splicing factor 6 [Xenopus laevis]
gi|28436899|gb|AAH46668.1| MGC52985 protein [Xenopus laevis]
Length = 667
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 21/140 (15%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRD----GSKS-MANQR 63
G+ FV FED RDA DA+ L+ + R+ +E ARG R R RD GS+S NQR
Sbjct: 36 GYGFVEFEDSRDADDAVYELNGKDLCGE--RVIIEHARGPR-RDRDGYGYGSRSGYRNQR 92
Query: 64 --------PTKTLFVINFDPIRTRE--RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQ 110
P +T F + + + +R +D+K G V + + R N ++F +
Sbjct: 93 TGRDKYGPPVRTEFRLVVENLSSRCSWQDLKDFMRQAGEVTYADAHKERANEGVIEFRSY 152
Query: 111 EEATKALESTDRSKLVDRVI 130
+ +A+E D +++ R I
Sbjct: 153 SDMKRAVEKLDGTEINGRRI 172
Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
RE+D++R F YG +L + ++ + FV+FE +A A+ + L + +E+A
Sbjct: 13 VREKDLQRFFGGYGKLLEIDLKNGYGFVEFEDSRDADDAVYELNGKDLCGERVIIEHA 70
>gi|395732000|ref|XP_003775997.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein C2orf16
homolog [Pongo abelii]
Length = 1984
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 165 SPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRR-RSPDYGRNRS 223
SP+ R RPSP R RSP+ R+ P R SP RHRSP RR RSP + S
Sbjct: 1733 SPSQRSRPSPSERRHRSPSERRHRSPSQRSRPSPSERRHRSPSQRSQRRHRSPSERSHHS 1792
Query: 224 PNFGRY------RSRSPVRRSR 239
P+ R+ R RSP+ RSR
Sbjct: 1793 PSERRHLSSSERRHRSPLERSR 1814
>gi|49204551|dbj|BAD24703.1| transformer-2b4 [Oryzias latipes]
Length = 287
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 111
AN P L V + T ERD+K F YG + V I R FAFV FE
Sbjct: 115 ANPDPNACLGVFGLS-LYTTERDLKDVFSKYGPLADVSIVYDQQSRRSRGFAFVYFENTP 173
Query: 112 EATKALESTDRSKLVDRVISVEYAL 136
+A +A E + +L R I V++++
Sbjct: 174 DAKEAKEKANGMELDGRRIRVDFSI 198
>gi|357131986|ref|XP_003567614.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Brachypodium
distachyon]
Length = 262
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 19/129 (14%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR---------HRDGSKSM 59
G+AFV FED RDA DAI G D + +D RL VE A G RG+ + G +
Sbjct: 46 GYAFVEFEDPRDADDAIYGRDG--YNFDGYRLRVELAHGGRGQSYQYERPRSYSSGRRGG 103
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFA-------FVQFETQEE 112
++R + V P +D+K H G+V + R + ++ +
Sbjct: 104 VSRRSEYRVLVDGL-PSSASWQDLKDHMRRAGDVCFSDVYREAGAIVGIVDYTNYDDMKY 162
Query: 113 ATKALESTD 121
A + L+ T+
Sbjct: 163 AIRKLDGTE 171
>gi|449438193|ref|XP_004136874.1| PREDICTED: uncharacterized protein LOC101219227 [Cucumis sativus]
Length = 283
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKA 116
T +L V+N RT D+ F YG V+ + I R FAFV+++ +EA KA
Sbjct: 15 TYSLLVLNI-TFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKA 73
Query: 117 LESTDRSKLVDRVISVEYA 135
+E D + + R I+V++A
Sbjct: 74 VERLDGTMVDGREITVQFA 92
>gi|325190523|emb|CCA25022.1| premRNAsplicing factor SF2 putative [Albugo laibachii Nc14]
Length = 303
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 11/124 (8%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA---RGERGRHRDGSKSMANQRPT 65
+AF+ FED RDA DAI D + Y+ +RL VE A E+ +H GS+S + +
Sbjct: 42 AYAFIDFEDARDAEDAIEARDG--YKYEGQRLRVERANPKNIEKEKHVRGSRS----KGS 95
Query: 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNF-AFVQFETQEEATKALESTDRSK 124
T+ V N P R +D+K G V +I ++ V F+ ++ A++ D +K
Sbjct: 96 NTVKVTNL-PSRVSWQDLKDFMRKAGEVTFAKIDKHGDGIVDFKHHDDMKYAIKRLDDTK 154
Query: 125 LVDR 128
+R
Sbjct: 155 FRNR 158
>gi|321252695|ref|XP_003192495.1| hypothetical protein CGB_B2920W [Cryptococcus gattii WM276]
gi|317458963|gb|ADV20708.1| Hypothetical protein CGB_B2920W [Cryptococcus gattii WM276]
Length = 286
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 76 IRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVD 127
IRTRERD++ F YG+V V I R F F+ T E+A + +E + L
Sbjct: 91 IRTRERDLEDEFMRYGDVEKVVIVYDQRTDRSRGFGFITMRTTEDAARCIEKLNGLSLHG 150
Query: 128 RVISVEYA 135
R I V+Y+
Sbjct: 151 RNIRVDYS 158
>gi|72086008|ref|XP_793277.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Strongylocentrotus purpuratus]
Length = 638
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 10/129 (7%)
Query: 9 GFAFVYFEDDRDAADAIRGLDN--IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK 66
GFAF+ F+ + AA A R L + I +++ ++V+WA D K
Sbjct: 295 GFAFLEFDSHKAAASAKRKLASGRIKV-WNQINVNVDWADPVIEPDSD------TMSKVK 347
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+++ N T E IK F YG V + +++ FV F+ ++ A KA+E + +
Sbjct: 348 VVYIRNL-STETTEVKIKEDFGQYGEVEKAKKMKDYCFVHFKERDAAVKAIEEMNGKEYE 406
Query: 127 DRVISVEYA 135
I V A
Sbjct: 407 GTTIEVSLA 415
>gi|60729607|pir||JC7925 nucleolin - common carp
gi|27804344|gb|AAO22235.1| nucleolin [Cyprinus carpio]
Length = 693
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAF+ FE DA +A+ +N + R + +E+++ +R R PTKTL
Sbjct: 487 GFAFLEFESVEDAKEALENCNNTEI--EGRSIRLEFSQNDRDRSS--GGGRGGSGPTKTL 542
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIR-----RNFAFVQFETQEEATKALESTDRS 123
FV T + +K FE N V R + F FV F+++ + A E+ D
Sbjct: 543 FVKGLSE-DTTDHSLKEAFEGAVNARIVTDRETGSSKGFGFVDFDSEGDCKAAKEAMDDG 601
Query: 124 KLVDRVISVEYA 135
++ ++++YA
Sbjct: 602 EIDGNRVTLDYA 613
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 14/95 (14%)
Query: 47 GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN----- 101
GE+ R + AN+ + V+N E ++ FE + +R+ +N
Sbjct: 435 GEKSRQGSRTVGQANK-----ILVVNNLSFSANEESLQSVFE---KAVSIRVPQNNGRPK 486
Query: 102 -FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
FAF++FE+ E+A +ALE+ + +++ R I +E++
Sbjct: 487 GFAFLEFESVEDAKEALENCNNTEIEGRSIRLEFS 521
>gi|449450504|ref|XP_004143002.1| PREDICTED: uncharacterized protein LOC101216322 [Cucumis sativus]
Length = 257
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEAT 114
R T +L V+N RT D+ F+ YG V+ V I R FAFV+++ +EA
Sbjct: 13 RDTYSLLVLNIT-FRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQ 71
Query: 115 KALESTDRSKLVDRVISVEYA 135
KA++ D L R I V++A
Sbjct: 72 KAIDKLDGRMLDGREIMVQFA 92
>gi|308459689|ref|XP_003092160.1| hypothetical protein CRE_20046 [Caenorhabditis remanei]
gi|308254090|gb|EFO98042.1| hypothetical protein CRE_20046 [Caenorhabditis remanei]
Length = 333
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHR-------DGSKSMAN 61
FAF+ F+D RDA +A+R D + +D +RL VE+ RG+ R +GS+ N
Sbjct: 44 AFAFIQFDDRRDAKEAVRARDG--YEFDGKRLRVEFPRGQGPRGPGGRPTRDNGSRFGRN 101
Query: 62 QRPTKTL---FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALE 118
P K ++ P +DIK H + G + + + V+FE E+ A
Sbjct: 102 GGPPKRSNYRLIVEGLPRSGSWQDIKDHLKQAGEICYANVHNGEGVVEFERYEDLEYAFR 161
Query: 119 STDRSKL 125
D +K
Sbjct: 162 KYDDTKF 168
>gi|387018626|gb|AFJ51431.1| Serine/arginine-rich splicing factor 12-like [Crotalus adamanteus]
Length = 234
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATK 115
P +LFV N TR D++R F YG V+ V I R FA++QFE +A
Sbjct: 8 PNTSLFVRNVADA-TRPEDLRREFGRYGPVVDVYIPLDFYTRRPRGFAYIQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + +R + R I +++A D
Sbjct: 67 ALYNLNRKWVCGRQIEIQFAQGD 89
>gi|49204567|dbj|BAD24706.1| transformer-2b7 [Oryzias latipes]
Length = 297
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 111
AN P L V + T ERD+K F YG + V I R FAFV FE
Sbjct: 125 ANPDPNACLGVFGLS-LYTTERDLKDVFSKYGPLADVSIVYDQQSRRSRGFAFVYFENTP 183
Query: 112 EATKALESTDRSKLVDRVISVEYAL 136
+A +A E + +L R I V++++
Sbjct: 184 DAKEAKEKANGMELDGRRIRVDFSI 208
>gi|148236671|ref|NP_001080216.1| transformer 2 alpha homolog [Xenopus laevis]
gi|27924195|gb|AAH44990.1| Tra2a-prov protein [Xenopus laevis]
Length = 276
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 58 SMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFET 109
S AN P + V + T ERDI+ F YG + V + R FAFV FE
Sbjct: 104 SRANPDPNLCIGVFGLS-LYTTERDIREVFSRYGPLAGVNVVYDQRTGRSRGFAFVYFER 162
Query: 110 QEEATKALESTDRSKLVDRVISVEYAL 136
E++ +A+E D +L R I V+Y++
Sbjct: 163 IEDSREAMEHADGMELDGRRIRVDYSI 189
>gi|58258445|ref|XP_566635.1| hypothetical protein CNA02490 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57222772|gb|AAW40816.1| hypothetical protein CNA02490 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 287
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 46/106 (43%), Gaps = 26/106 (24%)
Query: 76 IRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVD 127
IRTRERD++ F YG+V V I R F F+ T ++A + +E + L
Sbjct: 91 IRTRERDLEDEFMRYGDVEKVVIVYDQRTDRSRGFGFITMRTVDDAARCIEKLNGLSLHG 150
Query: 128 RVISVEYALKDDSE--------------RDDRYD----SPRRGGYG 155
R I V+Y+ RDDRY RRGGYG
Sbjct: 151 RNIRVDYSATQKPHSSTPGQYMGAKRPVRDDRYGRGRYDDRRGGYG 196
>gi|378733387|gb|EHY59846.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 503
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 35 YDRRRLSVEWARGERGRHRDGS---KSMANQ--RPTKTLFVINFDPIRTRERDIKRHFEP 89
D R L+V++A ++ KS +Q PT TLF+ N T+E D+ F P
Sbjct: 323 LDGRPLNVDFANARSNDNKPADNRRKSYGDQLGEPTDTLFLGNLSFDCTQE-DVSEAFAP 381
Query: 90 YGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
+G V+ +R+ + F +V F + +EA ALE+ + +R I ++Y+
Sbjct: 382 HGTVMGIRLPTDRETGAPKGFGYVTFGSVDEAKAALEAMQGGYIKNRPIRLDYS 435
>gi|325087601|gb|EGC40911.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 316
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 85/186 (45%), Gaps = 13/186 (6%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKS--MANQRPT 65
+GF F+ +ED DA D + F +R L+V++ARG R + S + RP
Sbjct: 57 SGFGFIEYEDAMDAKDVVPAFHGTDFKGER--LTVQFARGPRHKETFSGPSDRSSAPRPR 114
Query: 66 KTLFVINFDPI-RTRERDIKRHFEPYG-NVLHVRIRRNF-AFVQFETQEEATKALESTD- 121
+T++ + + T +D+K G +V++ + FV+FET + A+E D
Sbjct: 115 RTIYRMQISGLPETSWQDLKDFARQSGLDVVYSETGHDGRGFVEFETGSDLKTAVEKLDG 174
Query: 122 RSKLVDRVISVE-YALKDDSERDDRYDS---PRRGGYGRHSPYGRSPSPAYRRRPSPDYG 177
R RV+ + ++D + D Y S RRGGY + Y R P P Y
Sbjct: 175 REFKGSRVLCTQDIQSQEDRQPRDPYRSRSPGRRGGYHPYDDYDRRGPPRSGYSPRNHY- 233
Query: 178 RGRSPA 183
R RSPA
Sbjct: 234 RERSPA 239
>gi|157279827|ref|NP_001098427.1| transformer 2b isoform 2 [Oryzias latipes]
gi|49204538|dbj|BAD24701.1| transformer-2b2 [Oryzias latipes]
Length = 297
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 111
AN P L V + T ERD+K F YG + V I R FAFV FE
Sbjct: 125 ANPDPNACLGVFGLS-LYTTERDLKDVFSKYGPLADVSIVYDQQSRRSRGFAFVYFENTP 183
Query: 112 EATKALESTDRSKLVDRVISVEYAL 136
+A +A E + +L R I V++++
Sbjct: 184 DAKEAKEKANGMELDGRRIRVDFSI 208
>gi|225718298|gb|ACO14995.1| Splicing factor, arginine/serine-rich 4 [Caligus clemensi]
Length = 234
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
TRERD+++ F+ YG + + ++ + FV+FE +A A++ D + + VE+A
Sbjct: 17 TRERDVEKFFKGYGKLREIALKNGYGFVEFEDHRDADDAVQDLDGKDMNGSRVRVEFA 74
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 26/147 (17%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSK----------- 57
G+ FV FED RDA DA++ LD R R VE+AR R + R GS+
Sbjct: 40 GYGFVEFEDHRDADDAVQDLDGKDMNGSRVR--VEFARSPRDK-RGGSRYPSTSSRRSPP 96
Query: 58 SMANQRPTK-------TLFVINFDPIRTRE--RDIKRHFEPYGNVLHVRI---RRNFAFV 105
P K T + I + + +R +D+K +F G++ + R N V
Sbjct: 97 RGRRGAPIKRNPPGRRTQYRIRVENLSSRASWQDLKDYFRSCGDITYTNAHKPRNNEGVV 156
Query: 106 QFETQEEATKALESTDRSKLVDRVISV 132
+F + AL+ D ++L R I +
Sbjct: 157 EFGDKRAMENALDRLDDTELAGRRIRL 183
>gi|241856245|ref|XP_002416055.1| RNA binding motif-containing protein, putative [Ixodes scapularis]
gi|215510269|gb|EEC19722.1| RNA binding motif-containing protein, putative [Ixodes scapularis]
Length = 195
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 64 PTKTLFVINF-DPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDR 122
P LFV + D +RT E ++ F YG V + + FV T+EE +AL++ +
Sbjct: 3 PRTKLFVGHLPDGLRTEE--LQELFAKYGTVTECDVINKYGFVHMSTEEECEEALKNLNN 60
Query: 123 SKLVDRVISVE 133
+ +SVE
Sbjct: 61 YNFMGSTLSVE 71
>gi|320163510|gb|EFW40409.1| Snrp70 protein [Capsaspora owczarzaki ATCC 30864]
Length = 320
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQE 111
A P KTLF+ N T E +KR E YG++ + I RN +AFV+FE +
Sbjct: 98 ATSDPFKTLFISNLS-YDTTEESLKREMEEYGSIKQIHIVRNTQTSKPRGYAFVEFEHER 156
Query: 112 EATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSP 159
+ A + D K+ R I V++ + R + PRR G G P
Sbjct: 157 DMKDAYKQADGRKVDGRRIVVDF----ERGRTIKEWKPRRLGGGVGLP 200
>gi|303317336|ref|XP_003068670.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240108351|gb|EER26525.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 300
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 84/187 (44%), Gaps = 26/187 (13%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRR--RLSVEWARGERGRHR-DGSKSMANQ-R 63
+GF F+ +ED DA D + P G D + RL+V++ARG R + G +N R
Sbjct: 42 SGFGFIEYEDALDARDVV------PDGTDFKGSRLTVQFARGPRHKETFSGPSDRSNAPR 95
Query: 64 PTKTLFVINFDPI-RTRERDIKRHFEPYG-NVLHVRIRRNF---AFVQFETQEEATKALE 118
P +T + + + T +D+K G +V++ R+ FV+FET + A+E
Sbjct: 96 PRRTPYRMQISGLPETSWQDLKDFARQSGLDVVYSETLRDHEGRGFVEFETGADLKTAIE 155
Query: 119 STDRSKLVDRVISVEYALK--DDSERDDRYDS---PRRGGY------GRHSPYGRSPSPA 167
D + ++ ++ DD D Y S RRGGY R P G SP
Sbjct: 156 KLDGREFKGSRVTCTQDIQAPDDRPVRDPYRSRSPVRRGGYPPMDDYDRRPPRGYSPRGH 215
Query: 168 YRRRPSP 174
YR R P
Sbjct: 216 YRERSPP 222
>gi|157822515|ref|NP_001102155.1| splicing factor, arginine/serine-rich 4 [Rattus norvegicus]
gi|149024115|gb|EDL80612.1| similar to Sfrs4 protein (predicted) [Rattus norvegicus]
Length = 488
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136
+ RERD++R F+ YG +L V ++ + FV+F+ +A A+ + L + VE+A
Sbjct: 12 QARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHAR 71
Query: 137 KDDSERDDRYDSPRRGGYG 155
RD Y S R GYG
Sbjct: 72 --GPRRDGSYGSG-RSGYG 87
>gi|344273957|ref|XP_003408785.1| PREDICTED: serine/arginine-rich splicing factor 5-like [Loxodonta
africana]
Length = 271
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIKDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEY 134
+++E+
Sbjct: 65 ERVTIEH 71
>gi|156379214|ref|XP_001631353.1| predicted protein [Nematostella vectensis]
gi|156218392|gb|EDO39290.1| predicted protein [Nematostella vectensis]
Length = 200
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 20/142 (14%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER----GRH-RDGSKSMANQR 63
G+ FV F+D RDA DA+ L+ + R+ VE+++G R GR RD S
Sbjct: 36 GYGFVEFDDHRDAEDAVHDLNGRDLIGE--RVVVEFSKGRRSEGGGRDRRDFSGRGGRDG 93
Query: 64 --------PTKTLFVINFDPI--RTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQ 110
P +T + + + + RT +D+K +F YG V + + R V+FE++
Sbjct: 94 GRRPIYGPPVRTNYSVIVENLSSRTSWQDLKDYFRKYGKVTYADAHKKRIGEGVVEFESK 153
Query: 111 EEATKALESTDRSKLVDRVISV 132
++ A+E D ++L R I V
Sbjct: 154 DDLNTAIEKLDDTELGGRRIRV 175
>gi|357631525|gb|EHJ78995.1| hypothetical protein KGM_15683 [Danaus plexippus]
Length = 249
Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 79/181 (43%), Gaps = 23/181 (12%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW------------ARGERGRHRDGSK 57
FAFV FED RDA DA+R D + YD RL VE+ ++ +R R ++
Sbjct: 51 FAFVEFEDPRDADDAVRARDG--YDYDGYRLRVEFPRGGGGGARGGRSQPDRFGPRPAAR 108
Query: 58 SMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV-RIRRNFAFVQFETQEEATKA 116
+R + V P + + D+K H G+V + V+F E+ A
Sbjct: 109 GPPARRSEYRVLVTGLPPSGSWQ-DLKDHMREAGDVCFADTFKDGTGVVEFLRHEDMKYA 167
Query: 117 LESTDRSKLVDRVISVEYA-LKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPD 175
++ D S+ V Y +K+D Y S GG SP ++ SP+Y RR SP
Sbjct: 168 VKKLDDSRFRSHEGEVSYIRVKED------YGSGGGGGLRDRSPEYQAGSPSYTRRGSPS 221
Query: 176 Y 176
Y
Sbjct: 222 Y 222
>gi|449528821|ref|XP_004171401.1| PREDICTED: uncharacterized LOC101216322 [Cucumis sativus]
Length = 251
Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEAT 114
R T +L V+N RT D+ F+ YG V+ V I R FAFV+++ +EA
Sbjct: 13 RDTYSLLVLNIT-FRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQ 71
Query: 115 KALESTDRSKLVDRVISVEYA 135
KA++ D L R I V++A
Sbjct: 72 KAIDKLDGRMLDGREIMVQFA 92
>gi|171679559|ref|XP_001904726.1| hypothetical protein [Podospora anserina S mat+]
gi|170939405|emb|CAP64633.1| unnamed protein product [Podospora anserina S mat+]
Length = 816
Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+FV N R ++++ F YG + + ++ + FVQ+ EA ALE+ +L
Sbjct: 356 IFVGNLSSDRVSKKEVFAVFSKYGRLAQISMKSAYGFVQYHNVSEAQAALEACQDMELGG 415
Query: 128 RVISVEYALKDDSE-RDDRYDSP-RRGG 153
R I +E + + + DDR SP RRGG
Sbjct: 416 RRIHLEISRRQKKKGGDDRGHSPDRRGG 443
>gi|427777415|gb|JAA54159.1| Putative alternative splicing factor [Rhipicephalus pulchellus]
Length = 484
Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 13/139 (9%)
Query: 5 LHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR---HRDGSKSMAN 61
L GF FV F+D RDA DA+ L+ D R+ VE A G R R
Sbjct: 32 LLKNGFGFVEFDDYRDADDAVYELNGREL--DGERVVVELAHGTARRPPPPRSAWADSGT 89
Query: 62 QR---PTKTLFVINFDPIRTR--ERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEA 113
R PT+T + + + + +R +D+K G+V + R RRN V+F + +
Sbjct: 90 NRYGPPTRTDYRVIIENLSSRISWQDLKDRMRQVGDVTYADAHRHRRNEGVVEFASYSDM 149
Query: 114 TKALESTDRSKLVDRVISV 132
+A+E D +++ R I V
Sbjct: 150 KRAIEKLDNTEINGRRIRV 168
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
R RERD++R F +G + V ++ F FV+F+ +A A+ + +L + VE A
Sbjct: 12 RVRERDLERFFRGFGKIREVLLKNGFGFVEFDDYRDADDAVYELNGRELDGERVVVELA 70
>gi|8778550|gb|AAF79558.1|AC022464_16 F22G5.31 [Arabidopsis thaliana]
Length = 415
Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 56 SKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV-----------RIRRNFAF 104
S S + P +L+V R ERD++ HF G V+ V R R F F
Sbjct: 97 SVSSDAENPGNSLYVTGLSH-RVTERDLEDHFAKEGKVVDVTDVHLVLDPWTRESRGFGF 155
Query: 105 VQFETQEEATKALESTDRSKLVDRVISVEYA 135
+ ++ +A + + S D S L RVI+VE A
Sbjct: 156 ISMKSVGDANRCIRSLDHSVLQGRVITVEKA 186
>gi|426233598|ref|XP_004023549.1| PREDICTED: LOW QUALITY PROTEIN: serine/arginine-rich splicing
factor 5 [Ovis aries]
Length = 274
Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGXIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEY 134
+++E+
Sbjct: 65 ERVTIEH 71
>gi|148612890|ref|NP_542781.3| serine/arginine-rich splicing factor 12 [Homo sapiens]
gi|47606193|sp|Q8WXF0.1|SRS12_HUMAN RecName: Full=Serine/arginine-rich splicing factor 12; AltName:
Full=35 kDa SR repressor protein; Short=SRrp35; AltName:
Full=Splicing factor, arginine/serine-rich 13B; AltName:
Full=Splicing factor, arginine/serine-rich 19
gi|18034491|gb|AAL57515.1|AF449428_1 SRrp35 [Homo sapiens]
gi|189054199|dbj|BAG36719.1| unnamed protein product [Homo sapiens]
gi|261859278|dbj|BAI46161.1| 35 kDa SR repressor protein [synthetic construct]
gi|380809714|gb|AFE76732.1| serine/arginine-rich splicing factor 12 [Macaca mulatta]
gi|384945376|gb|AFI36293.1| serine/arginine-rich splicing factor 12 [Macaca mulatta]
Length = 261
Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATK 115
P +LF+ N TR D++R F YG ++ V I R FA+VQFE +A
Sbjct: 8 PNTSLFIRNVADA-TRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 116 ALESTDRSKLVDRVISVEYALKD 138
AL + +R + R I +++A D
Sbjct: 67 ALYNLNRKWVCGRQIEIQFAQGD 89
>gi|78191396|gb|ABB29919.1| unknown [Solanum tuberosum]
Length = 258
Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKA 116
T +L V+N RT D+ F+ YG V+ V I R FAFV+++ Q+EA KA
Sbjct: 15 TYSLLVLNV-TFRTTADDLFPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYQDEAQKA 73
Query: 117 LESTDRSKLVDRVISVEYA 135
+E D + R I V +A
Sbjct: 74 VEKLDGRVVDGREIMVRFA 92
>gi|359322750|ref|XP_003639908.1| PREDICTED: serine/arginine-rich splicing factor 6 isoform 1 [Canis
lupus familiaris]
Length = 344
Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
RE+DI+R F YG +L + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 13 VREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHA 70
>gi|348505538|ref|XP_003440318.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Oreochromis
niloticus]
Length = 244
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 10/124 (8%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMA-------NQ 62
FAF+ FED RDA DA+ G D + YD RL VE+ R RG A
Sbjct: 54 FAFIEFEDPRDADDAVYGRDG--YDYDGYRLRVEFPRSGRGSRGGFGIGGAPRGRYGPPS 111
Query: 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTD 121
R ++ V++ P +D+K H G+V + + R+ V+F +E+ T A+ D
Sbjct: 112 RRSEYRVVVSGLPQSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLD 171
Query: 122 RSKL 125
+K
Sbjct: 172 NTKF 175
>gi|327280352|ref|XP_003224916.1| PREDICTED: serine/arginine-rich splicing factor 4-like [Anolis
carolinensis]
Length = 261
Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+FV P RERD+++ F+ YG + + ++ F FV+FE +A A+ + +L +
Sbjct: 6 VFVGRLSP-HARERDVEKFFKGYGRIREINLKNGFGFVEFEDHRDADDAVYELNGKELCN 64
Query: 128 RVISVEY 134
+++E+
Sbjct: 65 ERVTIEH 71
>gi|449486099|ref|XP_002195735.2| PREDICTED: serine/arginine-rich splicing factor 6 [Taeniopygia
guttata]
Length = 348
Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
RE+DI+R F YG +L V ++ + FV+FE +A A+ + L + VE+A
Sbjct: 13 VREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKDLCGERVIVEHA 70
>gi|354472339|ref|XP_003498397.1| PREDICTED: serine/arginine-rich splicing factor 4-like [Cricetulus
griseus]
Length = 476
Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 25/142 (17%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR---- 63
AG+ FV F+D RDA DA+ L+ + R+ VE ARG R RDGS
Sbjct: 20 AGYGFVEFDDLRDADDAVYELNGKDLCGE--RVIVEHARGPR---RDGSYGSGRSGYGYR 74
Query: 64 ---------PTKT---LFVINFDPIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFE 108
PT+T L V N R +D+K + G V + + R+N ++F
Sbjct: 75 RSGRDKYGPPTRTEYRLIVENLSS-RCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFV 133
Query: 109 TQEEATKALESTDRSKLVDRVI 130
+ + +ALE D +++ R I
Sbjct: 134 SYSDMKRALEKLDGTEVNGRKI 155
>gi|91091338|ref|XP_966697.1| PREDICTED: similar to hnRNP protein [Tribolium castaneum]
Length = 282
Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 15/134 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE-RGRHRDGSKS--MANQR-- 63
G+ FV F+D RDA DA+ L+ + R++VE ARG RGR + S+S +++R
Sbjct: 38 GYGFVEFDDHRDADDAVYELNGKKLLGE--RVTVERARGTPRGRDQWSSRSDHRSHERYG 95
Query: 64 -PTKT---LFVINFDPIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKA 116
PT+T L V N R +D+K + G V + + RN V+F + + A
Sbjct: 96 PPTRTNYRLIVENLSS-RISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFASYSDLKNA 154
Query: 117 LESTDRSKLVDRVI 130
+E D ++L R I
Sbjct: 155 IEKLDDTELNGRRI 168
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 75 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134
P T ERD++R F YG + V I+ + FV+F+ +A A+ + KL+ ++VE
Sbjct: 12 PYGTTERDLERFFRGYGRMRDVLIKNGYGFVEFDDHRDADDAVYELNGKKLLGERVTVER 71
Query: 135 A 135
A
Sbjct: 72 A 72
>gi|85096852|ref|XP_960334.1| hypothetical protein NCU07069 [Neurospora crassa OR74A]
gi|28921822|gb|EAA31098.1| predicted protein [Neurospora crassa OR74A]
Length = 313
Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 21/149 (14%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYD--RRRLSVEWARGERGRHRDGSKSMANQR--- 63
GF F+ ++D DA D + P G D RL+V++ARG RHR+G ++R
Sbjct: 43 GFGFIEYKDAMDARDVV------PDGSDFMGERLTVQFARG--ARHREGGPGFTHERNSQ 94
Query: 64 --PTKTL--FVINFDPIRTRERDIKRHFEPYG-NVLHVRIRRNF---AFVQFETQEEATK 115
P +T I+ P T +D+K G +V++ RN FV+FE +
Sbjct: 95 PRPRRTPHRMQISGLPNETSWQDLKDFARQSGLDVVYSETTRNQNGEGFVEFENAADLRT 154
Query: 116 ALESTDRSKLVDRVISVEYALKDDSERDD 144
A+E D + + ++ + D R+D
Sbjct: 155 AVEKLDNREFKGQRVTCVANTQPDIPRND 183
>gi|195611398|gb|ACG27529.1| splicing factor, arginine/serine-rich 7 [Zea mays]
gi|223973611|gb|ACN30993.1| unknown [Zea mays]
gi|413942175|gb|AFW74824.1| Splicing factor, arginine/serine-rich 7 isoform 1 [Zea mays]
gi|413942176|gb|AFW74825.1| Splicing factor, arginine/serine-rich 7 isoform 2 [Zea mays]
gi|448878178|gb|AGE46052.1| arginine/serine-rich splicing factor RS2Z37B transcript I [Zea
mays]
Length = 333
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
L+V P RTR RD++ F YG + V ++R++AF++F +A +A D +
Sbjct: 13 LYVGRLAP-RTRSRDLEYLFGKYGRIREVELKRDYAFIEFSEHRDADEARYQLDGRDVDG 71
Query: 128 RVISVEYA 135
I VE+A
Sbjct: 72 SRIVVEFA 79
>gi|307133720|ref|NP_001182516.1| splicing factor, arginine/serine-rich 5 [Equus caballus]
Length = 271
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEY 134
+++E+
Sbjct: 65 ERVTIEH 71
>gi|351695941|gb|EHA98859.1| Splicing factor, arginine/serine-rich 4 [Heterocephalus glaber]
Length = 489
Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
+ RERD++R F+ YG +L V ++ + FV+F+ +A A+ + L + VE+A
Sbjct: 12 QARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHA 70
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR----- 63
G+ FV F+D RDA DA+ L+ + R+ VE ARG R RDGS
Sbjct: 36 GYGFVEFDDLRDADDAVYELNGKDLCGE--RVIVEHARGPR---RDGSYGSGRSGYGYRR 90
Query: 64 --------PTKT---LFVINFDPIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFET 109
PT+T L V N R +D+K + G V + + R+N ++F +
Sbjct: 91 SGRDKYGPPTRTEYRLIVENLSS-RCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVS 149
Query: 110 QEEATKALESTDRSKLVDRVI 130
+ +ALE D +++ R I
Sbjct: 150 YSDMKRALEKLDGTEVNGRKI 170
>gi|225450797|ref|XP_002283865.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Vitis vinifera]
Length = 288
Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 14/127 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN------- 61
G+AFV FED RDA DAI G D + +D RL VE A G RG+ +
Sbjct: 46 GYAFVEFEDARDAEDAIYGRDG--YNFDGHRLRVELAHGGRGQSSSVDHYSSYSSSSRGG 103
Query: 62 -QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKA 116
R ++ ++ P +D+K H G+V ++ R V + ++ A
Sbjct: 104 LSRHSEYRVLVTGLPYSASWQDLKDHMRRAGDVCFSQVFRGRGGMTGIVDYTNYDDMKYA 163
Query: 117 LESTDRS 123
+ D S
Sbjct: 164 IRKLDDS 170
>gi|351708666|gb|EHB11585.1| Splicing factor, arginine/serine-rich 5 [Heterocephalus glaber]
Length = 270
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEY 134
+++E+
Sbjct: 65 ERVTIEH 71
>gi|62898449|dbj|BAD97164.1| splicing factor, arginine/serine-rich 4 variant [Homo sapiens]
Length = 382
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136
+ RERD++R F+ YG +L V ++ + FV+F+ +A A+ + L + VE+A
Sbjct: 12 QARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHAR 71
Query: 137 KDDSERDDRYDSPRRGGYG 155
RD Y S R GYG
Sbjct: 72 --GPRRDGSYGSG-RSGYG 87
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 19/138 (13%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER--GRHRDGSKSMANQR--- 63
G+ FV F+D RDA DA+ L+ + R+ VE ARG R G + G +R
Sbjct: 36 GYGFVEFDDLRDADDAVYELNGKDLCGE--RVIVEHARGPRRDGSYGSGRSGYGYRRSGR 93
Query: 64 -----PTKT---LFVINFDPIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEE 112
PT+T L V N R +D+K + G V + + R+N ++F + +
Sbjct: 94 DKYGPPTRTEYRLIVENLSS-RCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSD 152
Query: 113 ATKALESTDRSKLVDRVI 130
+ALE D +++ R I
Sbjct: 153 MKRALEKLDGTEVNGRKI 170
>gi|348573304|ref|XP_003472431.1| PREDICTED: serine/arginine-rich splicing factor 5-like [Cavia
porcellus]
Length = 273
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEY 134
+++E+
Sbjct: 65 ERVTIEH 71
>gi|291410875|ref|XP_002721708.1| PREDICTED: splicing factor, arginine/serine-rich 5 [Oryctolagus
cuniculus]
Length = 275
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEY 134
+++E+
Sbjct: 65 ERVTIEH 71
>gi|225459316|ref|XP_002285794.1| PREDICTED: uncharacterized protein LOC100243776 [Vitis vinifera]
gi|302141951|emb|CBI19154.3| unnamed protein product [Vitis vinifera]
Length = 257
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEAT 114
R T +L V+N RT D+ F+ YG V+ V I R FAFV+++ +EA
Sbjct: 13 RDTYSLLVLNIT-FRTTADDLFPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQ 71
Query: 115 KALESTDRSKLVDRVISVEYA 135
KA+E D + R I V++A
Sbjct: 72 KAVEKLDGRNVDGREIMVQFA 92
>gi|155372181|ref|NP_001094701.1| serine/arginine-rich splicing factor 4 [Bos taurus]
gi|154425888|gb|AAI51319.1| SFRS4 protein [Bos taurus]
gi|296490028|tpg|DAA32141.1| TPA: splicing factor, arginine/serine-rich 4 [Bos taurus]
Length = 493
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
+ RERD++R F+ YG +L V ++ + FV+F+ +A A+ + L + VE+A
Sbjct: 12 QARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHA 70
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR----- 63
G+ FV F+D RDA DA+ L+ + R+ VE ARG R RDGS
Sbjct: 36 GYGFVEFDDLRDADDAVYELNGKDLCGE--RVIVEHARGPR---RDGSYGSGRSGYGYRR 90
Query: 64 --------PTKT---LFVINFDPIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFET 109
PT+T L V N R +D+K + G V + + R+N ++F +
Sbjct: 91 SGRDKYGPPTRTEYRLIVENLSS-RCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVS 149
Query: 110 QEEATKALESTDRSKLVDRVI 130
+ +ALE D +++ R I
Sbjct: 150 YSDMKRALEKLDGTEVNGRKI 170
>gi|291399268|ref|XP_002716024.1| PREDICTED: FUS interacting protein (serine-arginine rich) 1
[Oryctolagus cuniculus]
Length = 182
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALE 118
+LFV N TR D++R F YG ++ V + R FA+VQFE +A AL
Sbjct: 11 SLFVRNV-ADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 119 STDRSKLVDRVISVEYALKD 138
+ DR + R I +++A D
Sbjct: 70 NLDRKWICGRQIEIQFAQGD 89
>gi|327281934|ref|XP_003225700.1| PREDICTED: serine/arginine-rich splicing factor 5-like [Anolis
carolinensis]
Length = 266
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEY 134
+++E+
Sbjct: 65 ERVTIEH 71
>gi|432107111|gb|ELK32534.1| Serine/arginine-rich splicing factor 5 [Myotis davidii]
Length = 280
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEY 134
+++E+
Sbjct: 65 ERVTIEH 71
>gi|395505266|ref|XP_003756964.1| PREDICTED: serine/arginine-rich splicing factor 6 isoform 2
[Sarcophilus harrisii]
Length = 321
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
RE+DI+R F YG +L V ++ + FV+FE +A A+ + L + VE+A
Sbjct: 13 VREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKDLCGERVIVEHA 70
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 23/141 (16%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRD----GSKSMANQR- 63
G+ FV FED RDA DA+ L+ + R+ VE ARG R R RD GS+ +++R
Sbjct: 36 GYGFVEFEDSRDADDAVYELNGKDLCGE--RVIVEHARGPR-RDRDGYSYGSRRYSSRRA 92
Query: 64 --------PTKT---LFVINFDPIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFET 109
P +T L V N R +D+K G V + + R N ++F +
Sbjct: 93 TGRDKYGPPVRTEYRLIVENLSS-RCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRS 151
Query: 110 QEEATKALESTDRSKLVDRVI 130
+ +AL+ D +++ R I
Sbjct: 152 YSDMKRALDKLDGTEINGRNI 172
>gi|330800147|ref|XP_003288100.1| hypothetical protein DICPUDRAFT_78935 [Dictyostelium purpureum]
gi|325081861|gb|EGC35362.1| hypothetical protein DICPUDRAFT_78935 [Dictyostelium purpureum]
Length = 297
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSKLVDRVISVE 133
T ER + HF YG + ++R+ +AF++++ +++A AL++ + + L++ ISVE
Sbjct: 12 TTERHLNDHFSKYGTITRNDVKRSNGRCYAFIEYKEKKDADDALKALNGTTLLNSKISVE 71
Query: 134 YA 135
+A
Sbjct: 72 WA 73
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMA 60
+AF+ +++ +DA DA++ L+ ++SVEWA+G G++ D +K A
Sbjct: 40 YAFIEYKEKKDADDALKALNGTTL--LNSKISVEWAKG--GKNADNNKCFA 86
>gi|440297375|gb|ELP90069.1| polyadenylate-binding protein, cytoplasmic and nuclear, putative
[Entamoeba invadens IP1]
Length = 283
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 43/152 (28%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTD 121
L+V N T+E D+++ F +GN+ ++ + F FV++ET+++A KAL + +
Sbjct: 4 LYVCNLS-YSTKESDLEKFFASFGNIKSCKLMISRGYSKGFGFVEYETEDDAKKAL-AAN 61
Query: 122 RSKLVDRVISVEYA---------------LKDDSERDDRYDSPRR-GGYGRHS------- 158
++ + R + ++ A D+ RD+R +PRR GGY +
Sbjct: 62 ETEFMGRKLRIDIARPPRERHESAQQGSQEGDNERRDERSGAPRRYGGYRNYENRYNRNY 121
Query: 159 ------PYGRSPSP-----AYRRRP-SPDYGR 178
PY R+ +Y+RRP +P+Y R
Sbjct: 122 ERSYERPYQRNDGEVREYRSYQRRPYNPNYER 153
>gi|307133730|ref|NP_001182521.1| splicing factor, arginine/serine-rich 5 [Pongo abelii]
gi|109084084|ref|XP_001109903.1| PREDICTED: splicing factor, arginine/serine-rich 5 isoform 2
[Macaca mulatta]
gi|297298154|ref|XP_001110094.2| PREDICTED: splicing factor, arginine/serine-rich 5 isoform 3
[Macaca mulatta]
gi|297298156|ref|XP_001110146.2| PREDICTED: splicing factor, arginine/serine-rich 5 isoform 4
[Macaca mulatta]
gi|119601409|gb|EAW81003.1| splicing factor, arginine/serine-rich 5, isoform CRA_b [Homo
sapiens]
Length = 271
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEY 134
+++E+
Sbjct: 65 ERVTIEH 71
>gi|149643059|ref|NP_001092399.1| serine/arginine-rich splicing factor 5 [Bos taurus]
gi|73963391|ref|XP_867135.1| PREDICTED: serine/arginine-rich splicing factor 5 isoform 9 [Canis
lupus familiaris]
gi|301763317|ref|XP_002917076.1| PREDICTED: splicing factor, arginine/serine-rich 5-like [Ailuropoda
melanoleuca]
gi|345803610|ref|XP_867196.2| PREDICTED: serine/arginine-rich splicing factor 5 isoform 15 [Canis
lupus familiaris]
gi|410962543|ref|XP_003987828.1| PREDICTED: serine/arginine-rich splicing factor 5 isoform 1 [Felis
catus]
gi|410962545|ref|XP_003987829.1| PREDICTED: serine/arginine-rich splicing factor 5 isoform 2 [Felis
catus]
gi|410962547|ref|XP_003987830.1| PREDICTED: serine/arginine-rich splicing factor 5 isoform 3 [Felis
catus]
gi|148878097|gb|AAI46186.1| SFRS5 protein [Bos taurus]
gi|281349392|gb|EFB24976.1| hypothetical protein PANDA_005250 [Ailuropoda melanoleuca]
gi|296482956|tpg|DAA25071.1| TPA: splicing factor, arginine/serine-rich 5 [Bos taurus]
gi|440897364|gb|ELR49075.1| Serine/arginine-rich splicing factor 5 [Bos grunniens mutus]
Length = 272
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEY 134
+++E+
Sbjct: 65 ERVTIEH 71
>gi|47221305|emb|CAG13241.1| unnamed protein product [Tetraodon nigroviridis]
Length = 315
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ + P RERD+++ F+ YG + + ++ F FV+F+ +A A+ + +L
Sbjct: 6 VFIGHLSP-HARERDVEKFFKGYGRIREINLKNGFGFVEFDDHRDADDAVYELNGKELCS 64
Query: 128 RVISVEYA 135
+++E+A
Sbjct: 65 ERVTIEHA 72
>gi|20978758|sp|Q8VE97.1|SRSF4_MOUSE RecName: Full=Serine/arginine-rich splicing factor 4; AltName:
Full=Splicing factor, arginine/serine-rich 4
gi|18043896|gb|AAH19437.1| Sfrs4 protein [Mus musculus]
Length = 489
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136
+ RERD++R F+ YG +L V ++ + FV+F+ +A A+ + L + VE+A
Sbjct: 12 QARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHAR 71
Query: 137 KDDSERDDRYDSPRRGGYG 155
RD Y S R GYG
Sbjct: 72 --GPRRDGSYGSG-RSGYG 87
>gi|86991438|ref|NP_001034554.1| serine/arginine-rich splicing factor 5 [Homo sapiens]
gi|86991440|ref|NP_008856.2| serine/arginine-rich splicing factor 5 [Homo sapiens]
gi|296215383|ref|XP_002754098.1| PREDICTED: serine/arginine-rich splicing factor 5 isoform 2
[Callithrix jacchus]
gi|332229001|ref|XP_003263676.1| PREDICTED: serine/arginine-rich splicing factor 5 isoform 1
[Nomascus leucogenys]
gi|332229003|ref|XP_003263677.1| PREDICTED: serine/arginine-rich splicing factor 5 isoform 2
[Nomascus leucogenys]
gi|332842591|ref|XP_510034.2| PREDICTED: serine/arginine-rich splicing factor 5 isoform 6 [Pan
troglodytes]
gi|332842593|ref|XP_001143701.2| PREDICTED: serine/arginine-rich splicing factor 5 isoform 2 [Pan
troglodytes]
gi|390469250|ref|XP_002754097.2| PREDICTED: serine/arginine-rich splicing factor 5 isoform 1
[Callithrix jacchus]
gi|397507326|ref|XP_003824150.1| PREDICTED: serine/arginine-rich splicing factor 5 [Pan paniscus]
gi|403264529|ref|XP_003924530.1| PREDICTED: serine/arginine-rich splicing factor 5 [Saimiri
boliviensis boliviensis]
gi|426377318|ref|XP_004055414.1| PREDICTED: serine/arginine-rich splicing factor 5 isoform 1
[Gorilla gorilla gorilla]
gi|426377320|ref|XP_004055415.1| PREDICTED: serine/arginine-rich splicing factor 5 isoform 2
[Gorilla gorilla gorilla]
gi|3929378|sp|Q13243.1|SRSF5_HUMAN RecName: Full=Serine/arginine-rich splicing factor 5; AltName:
Full=Delayed-early protein HRS; AltName:
Full=Pre-mRNA-splicing factor SRP40; AltName:
Full=Splicing factor, arginine/serine-rich 5
gi|1049080|gb|AAA93070.1| SRp40-1 [Homo sapiens]
gi|17511888|gb|AAH18823.1| Splicing factor, arginine/serine-rich 5 [Homo sapiens]
gi|30583017|gb|AAP35752.1| splicing factor, arginine/serine-rich 5 [Homo sapiens]
gi|61362109|gb|AAX42162.1| splicing factor arginine/serine-rich 5 [synthetic construct]
gi|61362114|gb|AAX42163.1| splicing factor arginine/serine-rich 5 [synthetic construct]
gi|71297198|gb|AAH40209.1| Splicing factor, arginine/serine-rich 5 [Homo sapiens]
gi|90075796|dbj|BAE87578.1| unnamed protein product [Macaca fascicularis]
gi|119601408|gb|EAW81002.1| splicing factor, arginine/serine-rich 5, isoform CRA_a [Homo
sapiens]
gi|119601411|gb|EAW81005.1| splicing factor, arginine/serine-rich 5, isoform CRA_a [Homo
sapiens]
gi|119601412|gb|EAW81006.1| splicing factor, arginine/serine-rich 5, isoform CRA_a [Homo
sapiens]
gi|208967490|dbj|BAG73759.1| splicing factor, arginine/serine-rich 5 [synthetic construct]
gi|355693393|gb|EHH27996.1| hypothetical protein EGK_18328 [Macaca mulatta]
gi|355778697|gb|EHH63733.1| hypothetical protein EGM_16760 [Macaca fascicularis]
gi|380815560|gb|AFE79654.1| serine/arginine-rich splicing factor 5 [Macaca mulatta]
gi|380815562|gb|AFE79655.1| serine/arginine-rich splicing factor 5 [Macaca mulatta]
gi|380815564|gb|AFE79656.1| serine/arginine-rich splicing factor 5 [Macaca mulatta]
gi|383420727|gb|AFH33577.1| serine/arginine-rich splicing factor 5 [Macaca mulatta]
gi|383420729|gb|AFH33578.1| serine/arginine-rich splicing factor 5 [Macaca mulatta]
gi|383420731|gb|AFH33579.1| serine/arginine-rich splicing factor 5 [Macaca mulatta]
gi|410218428|gb|JAA06433.1| serine/arginine-rich splicing factor 5 [Pan troglodytes]
gi|410218430|gb|JAA06434.1| serine/arginine-rich splicing factor 5 [Pan troglodytes]
gi|410252412|gb|JAA14173.1| serine/arginine-rich splicing factor 5 [Pan troglodytes]
gi|410252414|gb|JAA14174.1| serine/arginine-rich splicing factor 5 [Pan troglodytes]
gi|410303912|gb|JAA30556.1| serine/arginine-rich splicing factor 5 [Pan troglodytes]
gi|410303914|gb|JAA30557.1| serine/arginine-rich splicing factor 5 [Pan troglodytes]
gi|410357772|gb|JAA44585.1| serine/arginine-rich splicing factor 5 [Pan troglodytes]
gi|410357774|gb|JAA44586.1| serine/arginine-rich splicing factor 5 [Pan troglodytes]
gi|410358000|gb|JAA44587.1| splicing factor, arginine/serine-rich 5 [Pan troglodytes]
Length = 272
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEY 134
+++E+
Sbjct: 65 ERVTIEH 71
>gi|119226243|ref|NP_001073162.1| serine/arginine-rich splicing factor 5 [Mus musculus]
gi|119226245|ref|NP_033185.2| serine/arginine-rich splicing factor 5 [Mus musculus]
gi|119226247|ref|NP_001073163.1| serine/arginine-rich splicing factor 5 [Mus musculus]
gi|158631248|ref|NP_062130.2| serine/arginine-rich splicing factor 5 [Rattus norvegicus]
gi|306774128|ref|NP_001182434.1| serine/arginine-rich splicing factor 5 [Rattus norvegicus]
gi|306774130|ref|NP_001182435.1| serine/arginine-rich splicing factor 5 [Rattus norvegicus]
gi|354472150|ref|XP_003498303.1| PREDICTED: serine/arginine-rich splicing factor 5-like [Cricetulus
griseus]
gi|1168968|sp|Q09167.1|SRSF5_RAT RecName: Full=Serine/arginine-rich splicing factor 5; AltName:
Full=Delayed-early protein HRS; AltName:
Full=Insulin-induced growth response protein CL-4;
AltName: Full=Pre-mRNA-splicing factor SRP40; AltName:
Full=Splicing factor, arginine/serine-rich 5
gi|410516929|sp|O35326.2|SRSF5_MOUSE RecName: Full=Serine/arginine-rich splicing factor 5; AltName:
Full=Delayed-early protein HRS; AltName:
Full=Pre-mRNA-splicing factor SRP40; AltName:
Full=Splicing factor, arginine/serine-rich 5
gi|349079|gb|AAA62266.1| growth response protein [Rattus norvegicus]
gi|34849628|gb|AAH58479.1| Sfrs5 protein [Rattus norvegicus]
gi|52139013|gb|AAH82593.1| Splicing factor, arginine/serine-rich 5 (SRp40, HRS) [Mus musculus]
gi|74144656|dbj|BAE27313.1| unnamed protein product [Mus musculus]
gi|148670738|gb|EDL02685.1| mCG7614, isoform CRA_a [Mus musculus]
gi|148670740|gb|EDL02687.1| mCG7614, isoform CRA_a [Mus musculus]
gi|148670743|gb|EDL02690.1| mCG7614, isoform CRA_a [Mus musculus]
gi|148670745|gb|EDL02692.1| mCG7614, isoform CRA_a [Mus musculus]
gi|148670746|gb|EDL02693.1| mCG7614, isoform CRA_a [Mus musculus]
gi|149025034|gb|EDL81401.1| splicing factor, arginine/serine-rich 5, isoform CRA_b [Rattus
norvegicus]
gi|149025037|gb|EDL81404.1| splicing factor, arginine/serine-rich 5, isoform CRA_b [Rattus
norvegicus]
gi|344235744|gb|EGV91847.1| Splicing factor, arginine/serine-rich 5 [Cricetulus griseus]
Length = 269
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEY 134
+++E+
Sbjct: 65 ERVTIEH 71
>gi|417398268|gb|JAA46167.1| Putative serine/arginine-rich splicing factor 5 [Desmodus rotundus]
Length = 278
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNP-SAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEY 134
+++E+
Sbjct: 65 ERVTIEH 71
>gi|335292735|ref|XP_001927454.2| PREDICTED: serine/arginine-rich splicing factor 5 isoform 1 [Sus
scrofa]
gi|335292737|ref|XP_001927469.2| PREDICTED: serine/arginine-rich splicing factor 5 isoform 2 [Sus
scrofa]
Length = 272
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEY 134
+++E+
Sbjct: 65 ERVTIEH 71
>gi|12841460|dbj|BAB25217.1| unnamed protein product [Mus musculus]
gi|148670741|gb|EDL02688.1| mCG7614, isoform CRA_c [Mus musculus]
gi|148670742|gb|EDL02689.1| mCG7614, isoform CRA_c [Mus musculus]
gi|148670747|gb|EDL02694.1| mCG7614, isoform CRA_c [Mus musculus]
Length = 270
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEY 134
+++E+
Sbjct: 65 ERVTIEH 71
>gi|358394588|gb|EHK43981.1| hypothetical protein TRIATDRAFT_293293, partial [Trichoderma
atroviride IMI 206040]
Length = 859
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ N + +RD+ F +G + + ++ + FVQ+ T EE ALE+ ++
Sbjct: 375 IFIGNLSSDKVSKRDVFDIFHRFGRLAQISLKSAYGFVQYHTVEEGHSALENLQGMEVKG 434
Query: 128 RVISVEYALKDDSERDDRYDSP 149
R I +E + D + +R SP
Sbjct: 435 RRIHLEISRLQDKSKKERNRSP 456
>gi|440907568|gb|ELR57702.1| Serine/arginine-rich splicing factor 4, partial [Bos grunniens
mutus]
Length = 488
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
+ RERD++R F+ YG +L V ++ + FV+F+ +A A+ + L + VE+A
Sbjct: 6 QARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHA 64
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR----- 63
G+ FV F+D RDA DA+ L+ + R+ VE ARG R RDGS
Sbjct: 30 GYGFVEFDDLRDADDAVYELNGKDLCGE--RVIVEHARGPR---RDGSYGSGRSGYGYRR 84
Query: 64 --------PTKT---LFVINFDPIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFET 109
PT+T L V N R +D+K + G V + + R+N ++F +
Sbjct: 85 SGRDKYGPPTRTEYRLIVENLSS-RCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVS 143
Query: 110 QEEATKALESTDRSKLVDRVI 130
+ +ALE D +++ R I
Sbjct: 144 YSDMKRALEKLDGTEVNGRKI 164
>gi|156039485|ref|XP_001586850.1| hypothetical protein SS1G_11879 [Sclerotinia sclerotiorum 1980]
gi|154697616|gb|EDN97354.1| hypothetical protein SS1G_11879 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 788
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 17/119 (14%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LF+ N + +RD+ F YG + + I++ F FVQF KALE ++
Sbjct: 346 LFIGNLPSEKLTKRDLFHVFHKYGELAQISIKQAFGFVQFHDASACHKALEMEQGKEVRG 405
Query: 128 RVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDR 186
R + +E + + R D G+S +RR SP++ RG + +R
Sbjct: 406 RKMHLEVSKAQKNTRKDHTS-------------GQS----WRRSQSPEHTRGNASGRNR 447
>gi|402876562|ref|XP_003902030.1| PREDICTED: serine/arginine-rich splicing factor 5 [Papio anubis]
Length = 272
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEY 134
+++E+
Sbjct: 65 ERVTIEH 71
>gi|403351671|gb|EJY75331.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
gi|403370539|gb|EJY85135.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 343
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD-RVISVEYA 135
RTRE D+K F +G + + ++ N+AF+ +E E+A AL + V+ ++VE +
Sbjct: 104 RTREDDLKDSFSKFGRIKQLVLKHNYAFIDYENHEDAVAALREMNGKTFVNGEELAVEQS 163
Query: 136 L 136
+
Sbjct: 164 V 164
>gi|432936464|ref|XP_004082128.1| PREDICTED: serine/arginine-rich splicing factor 4-like isoform 2
[Oryzias latipes]
Length = 289
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ P + RERD+++ F+ YG + + ++ F FV+F+ +A A+ + +L+
Sbjct: 23 VFIGRLSP-QARERDVEKFFKGYGRIREINLKNGFGFVEFDDHRDADDAVYELNGKELLS 81
Query: 128 RVISVEYA 135
+++E+A
Sbjct: 82 ERVTIEHA 89
>gi|432936462|ref|XP_004082127.1| PREDICTED: serine/arginine-rich splicing factor 4-like isoform 1
[Oryzias latipes]
Length = 272
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ P + RERD+++ F+ YG + + ++ F FV+F+ +A A+ + +L+
Sbjct: 6 VFIGRLSP-QARERDVEKFFKGYGRIREINLKNGFGFVEFDDHRDADDAVYELNGKELLS 64
Query: 128 RVISVEYA 135
+++E+A
Sbjct: 65 ERVTIEHA 72
>gi|49204563|dbj|BAD24705.1| transformer-2b6 [Oryzias latipes]
Length = 184
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 111
AN P L V + T ERD+K F YG + V I R FAFV FE
Sbjct: 12 ANPDPNACLGVFGLS-LYTTERDLKDVFSKYGPLADVSIVYDQQSRRSRGFAFVYFENTP 70
Query: 112 EATKALESTDRSKLVDRVISVEYAL 136
+A +A E + +L R I V++++
Sbjct: 71 DAKEAKEKANGMELDGRRIRVDFSI 95
>gi|157278159|ref|NP_001098179.1| transformer 2b isoform 5 [Oryzias latipes]
gi|49204555|dbj|BAD24704.1| transformer-2b5 [Oryzias latipes]
Length = 183
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 111
AN P L V + T ERD+K F YG + V I R FAFV FE
Sbjct: 12 ANPDPNACLGVFGLS-LYTTERDLKDVFSKYGPLADVSIVYDQQSRRSRGFAFVYFENTP 70
Query: 112 EATKALESTDRSKLVDRVISVEYAL 136
+A +A E + +L R I V++++
Sbjct: 71 DAKEAKEKANGMELDGRRIRVDFSI 95
>gi|225437350|ref|XP_002265998.1| PREDICTED: pre-mRNA-splicing factor SF2-like isoform 1 [Vitis
vinifera]
gi|359480272|ref|XP_003632425.1| PREDICTED: pre-mRNA-splicing factor SF2-like isoform 2 [Vitis
vinifera]
Length = 296
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50
G+AFV FE+ RDA DAIRG D + +D RL VE A G RG
Sbjct: 46 GYAFVEFEESRDAEDAIRGRDG--YDFDGHRLRVELAHGGRG 85
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR-----NFAFVQFETQEEATK 115
+ R ++TL+V N P RER+++ F YG + H+ ++ +AFV+FE +A
Sbjct: 2 SSRASRTLYVGNL-PGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEESRDAED 60
Query: 116 ALESTD 121
A+ D
Sbjct: 61 AIRGRD 66
>gi|395504171|ref|XP_003756430.1| PREDICTED: serine/arginine-rich splicing factor 5 [Sarcophilus
harrisii]
Length = 266
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEY 134
+++E+
Sbjct: 65 ERVTIEH 71
>gi|126282694|ref|XP_001370225.1| PREDICTED: serine/arginine-rich splicing factor 5-like [Monodelphis
domestica]
Length = 265
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEY 134
+++E+
Sbjct: 65 ERVTIEH 71
>gi|449436495|ref|XP_004136028.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Cucumis sativus]
gi|449498497|ref|XP_004160553.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Cucumis sativus]
Length = 309
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 15/130 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+AFV FED DA DAIRG D + +D RL VE A G RG + ++
Sbjct: 46 GYAFVEFEDAEDAQDAIRGRDG--YDFDGHRLRVELAHGGRGHSSSNDRYSSHGGSRGGR 103
Query: 69 ---------FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATK 115
++ P +D+K H G+V ++ R+ V + ++
Sbjct: 104 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKY 163
Query: 116 ALESTDRSKL 125
A++ D S+
Sbjct: 164 AIKKLDDSEF 173
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR-----NFAFVQFETQEEATK 115
+ R ++T++V N P RE++++ F YG + H+ ++ +AFV+FE E+A
Sbjct: 2 SSRASRTVYVGNL-PGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60
Query: 116 ALESTD 121
A+ D
Sbjct: 61 AIRGRD 66
>gi|296207272|ref|XP_002750572.1| PREDICTED: serine/arginine-rich splicing factor 4 [Callithrix
jacchus]
Length = 500
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
+ RERD++R F+ YG +L V ++ + FV+F+ +A A+ + L + VE+A
Sbjct: 12 QARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHA 70
>gi|168009612|ref|XP_001757499.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691193|gb|EDQ77556.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 262
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 56/143 (39%), Gaps = 28/143 (19%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG------------------ 50
G+ F+ FED RDA DAIRG D + +D RL VE A G RG
Sbjct: 46 GYCFIEFEDGRDAEDAIRGRDG--YNFDGNRLRVEIAHGGRGPPPAVDRYSIYSSGGRGG 103
Query: 51 ---RHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-----F 102
G ++ R ++ + P +D+K H G+V ++ R+
Sbjct: 104 GGSAADCGGRAGGVSRRSEYRVTVTGLPSSASWQDLKDHMRRAGDVCFAQVFRDGTSGTM 163
Query: 103 AFVQFETQEEATKALESTDRSKL 125
V F ++ A+ D S+
Sbjct: 164 GIVDFTNYDDMKYAIRKLDDSEF 186
>gi|403293287|ref|XP_003937651.1| PREDICTED: serine/arginine-rich splicing factor 4 [Saimiri
boliviensis boliviensis]
Length = 500
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
+ RERD++R F+ YG +L V ++ + FV+F+ +A A+ + L + VE+A
Sbjct: 12 QARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHA 70
>gi|392870838|gb|EJB12075.1| pre-RNA splicing factor Srp2, variant [Coccidioides immitis RS]
Length = 399
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 81/185 (43%), Gaps = 20/185 (10%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHR-DGSKSMANQ-RPT 65
+GF F+ +ED DA D + F RL+V++ARG R + G +N RP
Sbjct: 139 SGFGFIEYEDALDARDVVPAYHGTDF--KGSRLTVQFARGPRHKETFSGPSDRSNAPRPR 196
Query: 66 KTLFVINFDPI-RTRERDIKRHFEPYG-NVLHVRIRRNF---AFVQFETQEEATKALEST 120
+T + + + T +D+K G +V++ R+ FV+FET + A+E
Sbjct: 197 RTPYRMQISGLPETSWQDLKDFARQSGLDVVYSETLRDHEGRGFVEFETGADLKTAIEKL 256
Query: 121 DRSKLVDRVISVEYALK--DDSERDDRYDS---PRRGGY------GRHSPYGRSPSPAYR 169
D + ++ ++ DD D Y S RRGGY R P G SP YR
Sbjct: 257 DGREFKGSRVTCTQDIQAPDDRPVRDPYRSRSPVRRGGYPPMDDYDRRPPRGYSPRGHYR 316
Query: 170 RRPSP 174
R P
Sbjct: 317 ERSPP 321
>gi|432882989|ref|XP_004074178.1| PREDICTED: uncharacterized protein LOC101163182 isoform 2 [Oryzias
latipes]
Length = 384
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 20/95 (21%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA- 135
R RE+D++R F+ YG +L V ++ + FV+F+ +A A+ + +L + VE+
Sbjct: 12 RAREKDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKELCGERVIVEHTK 71
Query: 136 --------------LKDDSERDDRYDSPRRGGYGR 156
L +S R S + GGYGR
Sbjct: 72 GPRRDGGYGGGGRNLDQESSR-----SSKNGGYGR 101
>gi|301788378|ref|XP_002929604.1| PREDICTED: hypothetical protein LOC100475275 [Ailuropoda
melanoleuca]
Length = 498
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136
+ RERD++R F+ YG +L V ++ + FV+F+ +A A+ + L + VE+A
Sbjct: 12 QARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHAR 71
Query: 137 KDDSERDDRYDSPRRGGYG 155
RD Y S R GYG
Sbjct: 72 --GPRRDGSYGSG-RSGYG 87
>gi|30583835|gb|AAP36166.1| Homo sapiens splicing factor, arginine/serine-rich 5 [synthetic
construct]
gi|60653861|gb|AAX29623.1| splicing factor arginine/serine-rich 5 [synthetic construct]
Length = 273
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEY 134
+++E+
Sbjct: 65 ERVTIEH 71
>gi|395849594|ref|XP_003797407.1| PREDICTED: serine/arginine-rich splicing factor 5 isoform 1
[Otolemur garnettii]
gi|395849596|ref|XP_003797408.1| PREDICTED: serine/arginine-rich splicing factor 5 isoform 2
[Otolemur garnettii]
Length = 270
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 128 RVISVEY 134
+++E+
Sbjct: 65 ERVTIEH 71
>gi|350408075|ref|XP_003488293.1| PREDICTED: serine/arginine-rich splicing factor 4-like isoform 2
[Bombus impatiens]
Length = 418
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 75 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134
P TRERD++R F YG V I+ + FV+F+ +A A+ + +L+ I+VE
Sbjct: 65 PYGTRERDLERFFRGYGRFRDVLIKNGYGFVEFDDYRDADDAVYELNGKELLGERITVER 124
Query: 135 ALKDDSERDDRYDSPRRGGYG 155
A D RGGYG
Sbjct: 125 ARGTPRGSDQWRYGDSRGGYG 145
>gi|281340422|gb|EFB16006.1| hypothetical protein PANDA_019831 [Ailuropoda melanoleuca]
Length = 488
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136
+ RERD++R F+ YG +L V ++ + FV+F+ +A A+ + L + VE+A
Sbjct: 12 QARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHAR 71
Query: 137 KDDSERDDRYDSPRRGGYG 155
RD Y S R GYG
Sbjct: 72 --GPRRDGSYGSG-RSGYG 87
>gi|383848642|ref|XP_003699957.1| PREDICTED: serine/arginine-rich splicing factor 4-like [Megachile
rotundata]
Length = 418
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 75 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134
P TRERD++R F YG V I+ + FV+F+ +A A+ + +L+ I+VE
Sbjct: 65 PYGTRERDLERFFRGYGRFRDVLIKNGYGFVEFDDYRDADDAVYELNGKELLGERITVER 124
Query: 135 ALKDDSERDDRYDSPRRGGYG 155
A D RGGYG
Sbjct: 125 ARGTPRGSDQWRYGDSRGGYG 145
>gi|328786878|ref|XP_391860.4| PREDICTED: serine/arginine-rich splicing factor 4 [Apis mellifera]
Length = 419
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 75 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134
P TRERD++R F YG V I+ + FV+F+ +A A+ + +L+ I+VE
Sbjct: 65 PYGTRERDLERFFRGYGRFRDVLIKNGYGFVEFDDYRDADDAVYELNGKELLGERITVER 124
Query: 135 ALKDDSERDDRYDSPRRGGYG 155
A D RGGYG
Sbjct: 125 ARGTPRGSDQWRYGDSRGGYG 145
>gi|410930984|ref|XP_003978877.1| PREDICTED: uncharacterized protein LOC101068731 [Takifugu rubripes]
Length = 379
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
RE+DI+R F YG ++ + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 13 VREKDIQRFFSGYGKLMEIDLKNGYGFVEFEDNRDADDAVYELNGKELCGERVIVEHA 70
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 63/148 (42%), Gaps = 23/148 (15%)
Query: 1 MCISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMA 60
M I L G+ FV FED+RDA DA+ L+ + R+ VE ARG R R RD +
Sbjct: 29 MEIDLK-NGYGFVEFEDNRDADDAVYELNGKELCGE--RVIVEHARGPR-RDRDFYGGGS 84
Query: 61 NQR------------PTKT---LFVINFDPIRTRERDIKRHFEPYGNVLHV---RIRRNF 102
P +T L V N R +D+K G V + + R N
Sbjct: 85 GYSSRSRTGRDKYGPPVRTEYRLVVENLSS-RCSWQDLKDFMRQAGEVTYADAHKERTNE 143
Query: 103 AFVQFETQEEATKALESTDRSKLVDRVI 130
++F + + +AL+ D + + R I
Sbjct: 144 GVIEFRSHSDMKRALDKLDGTDINGRKI 171
>gi|348518317|ref|XP_003446678.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Oreochromis niloticus]
Length = 594
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
K LFV N T E +++ F +G + V+ +++AF+ FE ++ A KALE + +
Sbjct: 302 VKVLFVRNLANGVTEEL-LEKSFSEFGKLERVKKLKDYAFIHFEERDGAVKALEEMNGKE 360
Query: 125 LVDRVISVEYALKDDSERDDR 145
L I + +A D +R +R
Sbjct: 361 LEGEPIEIVFAKPPDQKRKER 381
>gi|293334639|ref|NP_001169755.1| uncharacterized protein LOC100383636 [Zea mays]
gi|224031469|gb|ACN34810.1| unknown [Zea mays]
gi|414887660|tpg|DAA63674.1| TPA: hypothetical protein ZEAMMB73_707044 [Zea mays]
gi|414887661|tpg|DAA63675.1| TPA: hypothetical protein ZEAMMB73_707044 [Zea mays]
Length = 246
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 11/82 (13%)
Query: 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEAT 114
R T +L V+N RT D+ F+ YG ++ + I R FAFV+++ ++EA
Sbjct: 14 RDTYSLLVLNIT-FRTTADDLFPLFDKYGEIVDIYIPRDRRTGDSRGFAFVRYKYEDEAQ 72
Query: 115 KALESTDRSKLVD-RVISVEYA 135
KA+E D +LVD R I V++A
Sbjct: 73 KAVERLD-GRLVDGREIMVQFA 93
>gi|222616447|gb|EEE52579.1| hypothetical protein OsJ_34868 [Oryza sativa Japonica Group]
Length = 864
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 27/142 (19%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALE 118
+LFV N P R D++ F+ +G V V + R FAFV+F +A+KA
Sbjct: 398 SLFVSNL-PRSCRPEDVQVPFQKFGPVRDVYLPKDYNTGEPRGFAFVEFAHSSDASKARY 456
Query: 119 STDRSKLVDRVISVEYALKDDSERDD-------RYDSPRRGGYGRHSPYG---------- 161
+R L R ISV +A++ ++ R++SP+R R + G
Sbjct: 457 HMNRKMLSGREISVAFAVQTRKRPEEMRRIIGARHNSPQRKEECRTNSPGQPKGHDEKRK 516
Query: 162 -RSPSPAYRRRPSPDYGRGRSP 182
RS +P Y+ R D GR +P
Sbjct: 517 RRSYTPKYKDRQYADIGRDETP 538
>gi|116175257|ref|NP_001070684.1| serine/arginine-rich splicing factor 4 [Sus scrofa]
gi|115371753|gb|ABI96201.1| SFRS4 [Sus scrofa]
Length = 491
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
+ RERD++R F+ YG +L V ++ + FV+F+ +A A+ + L + VE+A
Sbjct: 12 QARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHA 70
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR----- 63
G+ FV F+D RDA DA+ L+ + R+ VE ARG R RDGS
Sbjct: 36 GYGFVEFDDLRDADDAVYELNGKDLCGE--RVIVEHARGPR---RDGSYGSGRSGYGYRR 90
Query: 64 --------PTKT---LFVINFDPIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFET 109
PT+T L V N R +D+K + G V + + R+N ++F +
Sbjct: 91 SGRDKYGPPTRTEYRLIVENLSS-RCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVS 149
Query: 110 QEEATKALESTDRSKLVDRVI 130
+ +ALE D +++ R I
Sbjct: 150 YSDMKRALEKLDGTEVNGRKI 170
>gi|410966619|ref|XP_003989828.1| PREDICTED: serine/arginine-rich splicing factor 4 [Felis catus]
Length = 499
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136
+ RERD++R F+ YG +L V ++ + FV+F+ +A A+ + L + VE+A
Sbjct: 12 QARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHAR 71
Query: 137 KDDSERDDRYDSPRRGGYG 155
RD Y S R GYG
Sbjct: 72 --GPRRDGSYGSG-RSGYG 87
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR----- 63
G+ FV F+D RDA DA+ L+ + R+ VE ARG R RDGS
Sbjct: 36 GYGFVEFDDLRDADDAVYELNGKDLCGE--RVIVEHARGPR---RDGSYGSGRSGYGYRR 90
Query: 64 --------PTKT---LFVINFDPIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFET 109
PT+T L V N R +D+K + G V + + R+N ++F +
Sbjct: 91 SGRDKYGPPTRTEYRLIVENLSS-RCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVS 149
Query: 110 QEEATKALESTDRSKLVDRVI 130
+ +ALE D +++ R I
Sbjct: 150 YSDMKRALEKLDGTEVNGRKI 170
>gi|403224084|dbj|BAM42214.1| splicing factor [Theileria orientalis strain Shintoku]
Length = 259
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
FAF+ F D RDA DAIR D F + ++L VE ER + GS+ +R L
Sbjct: 47 FAFIEFSDSRDARDAIRDKDG--FEFHGKKLRVELPFRERDQASGGSRRHGPRRGKYVLE 104
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRI-RRNFAFVQFETQEEATKALESTDRSKL 125
V P + + D+K H G+ H + R + F ++ + A+E D S
Sbjct: 105 VTGLPPSGSWQ-DLKDHMRDAGHCGHADVFRGGVGEISFFSRSDMEYAIEKYDGSTF 160
>gi|119187025|ref|XP_001244119.1| hypothetical protein CIMG_03560 [Coccidioides immitis RS]
Length = 398
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 84/187 (44%), Gaps = 26/187 (13%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRR--RLSVEWARGERGRHR-DGSKSMANQ-R 63
+GF F+ +ED DA D + P G D + RL+V++ARG R + G +N R
Sbjct: 140 SGFGFIEYEDALDARDVV------PDGTDFKGSRLTVQFARGPRHKETFSGPSDRSNAPR 193
Query: 64 PTKTLFVINFDPI-RTRERDIKRHFEPYG-NVLHVRIRRNF---AFVQFETQEEATKALE 118
P +T + + + T +D+K G +V++ R+ FV+FET + A+E
Sbjct: 194 PRRTPYRMQISGLPETSWQDLKDFARQSGLDVVYSETLRDHEGRGFVEFETGADLKTAIE 253
Query: 119 STDRSKLVDRVISVEYALK--DDSERDDRYDS---PRRGGY------GRHSPYGRSPSPA 167
D + ++ ++ DD D Y S RRGGY R P G SP
Sbjct: 254 KLDGREFKGSRVTCTQDIQAPDDRPVRDPYRSRSPVRRGGYPPMDDYDRRPPRGYSPRGH 313
Query: 168 YRRRPSP 174
YR R P
Sbjct: 314 YRERSPP 320
>gi|348582426|ref|XP_003476977.1| PREDICTED: transformer-2 protein homolog beta-like [Cavia
porcellus]
Length = 337
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 111
AN P L V + T ERD++ F YG + V I R FAFV FE +
Sbjct: 158 ANPDPNCCLGVFGLS-LYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVD 216
Query: 112 EATKALESTDRSKLVDRVISVEYAL 136
+A +A E + +L R I V++++
Sbjct: 217 DAKEAKERANGMELDGRRIRVDFSI 241
>gi|114555162|ref|XP_001155042.1| PREDICTED: serine/arginine-rich splicing factor 4 isoform 5 [Pan
troglodytes]
gi|397515847|ref|XP_003828154.1| PREDICTED: serine/arginine-rich splicing factor 4 [Pan paniscus]
gi|261858864|dbj|BAI45954.1| splicing factor, arginine/serine-rich 4 [synthetic construct]
gi|410219650|gb|JAA07044.1| serine/arginine-rich splicing factor 4 [Pan troglodytes]
gi|410253776|gb|JAA14855.1| serine/arginine-rich splicing factor 4 [Pan troglodytes]
gi|410253778|gb|JAA14856.1| serine/arginine-rich splicing factor 4 [Pan troglodytes]
gi|410300938|gb|JAA29069.1| serine/arginine-rich splicing factor 4 [Pan troglodytes]
gi|410356834|gb|JAA44544.1| serine/arginine-rich splicing factor 4 [Pan troglodytes]
Length = 494
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136
+ RERD++R F+ YG +L V ++ + FV+F+ +A A+ + L + VE+A
Sbjct: 12 QARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHAR 71
Query: 137 KDDSERDDRYDSPRRGGYG 155
RD Y S R GYG
Sbjct: 72 --GPRRDGSYGSG-RSGYG 87
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR----- 63
G+ FV F+D RDA DA+ L+ + R+ VE ARG R RDGS
Sbjct: 36 GYGFVEFDDLRDADDAVYELNGKDLCGE--RVIVEHARGPR---RDGSYGSGRSGYGYRR 90
Query: 64 --------PTKT---LFVINFDPIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFET 109
PT+T L V N R +D+K + G V + + R+N ++F +
Sbjct: 91 SGRDKYGPPTRTEYRLIVENLSS-RCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVS 149
Query: 110 QEEATKALESTDRSKLVDRVI 130
+ +ALE D +++ R I
Sbjct: 150 YSDMKRALEKLDGTEVNGRKI 170
>gi|409038919|gb|EKM48719.1| hypothetical protein PHACADRAFT_266187 [Phanerochaete carnosa
HHB-10118-sp]
Length = 242
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFETQEEA 113
Q P L V + R RD+++ F G V H R R F FV ET EEA
Sbjct: 69 QNPGNNLHVSSLS-SRVDTRDLEQAFAKIGRVKKAQVMYDPHTRESRGFGFVTMETAEEA 127
Query: 114 TKALESTDRSKLVDRVISVEYA 135
A+ + + + L+ + ++V A
Sbjct: 128 DAAVTALNNADLMGKTMTVTKA 149
>gi|213515188|ref|NP_001133716.1| transformer-2 protein homolog beta [Salmo salar]
gi|209155068|gb|ACI33766.1| Splicing factor, arginine/serine-rich 10 [Salmo salar]
Length = 302
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 111
AN P L V + T ERD++ F YG + V I R FAFV FE +E
Sbjct: 114 ANPDPNCCLGVFGLS-LYTTERDLRDVFSKYGPLADVSIVYDQQSRRSRGFAFVYFEVRE 172
Query: 112 EATKALESTDRSKLVDRVISVEYAL 136
+A A E + +L R I V++++
Sbjct: 173 DANGAKERANGMELDGRRIRVDFSI 197
>gi|386780975|ref|NP_001247807.1| serine/arginine-rich splicing factor 4 [Macaca mulatta]
gi|355745074|gb|EHH49699.1| hypothetical protein EGM_00406 [Macaca fascicularis]
gi|380787433|gb|AFE65592.1| serine/arginine-rich splicing factor 4 [Macaca mulatta]
gi|383408863|gb|AFH27645.1| serine/arginine-rich splicing factor 4 [Macaca mulatta]
Length = 494
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
+ RERD++R F+ YG +L V ++ + FV+F+ +A A+ + L + VE+A
Sbjct: 12 QARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHA 70
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR----- 63
G+ FV F+D RDA DA+ L+ + R+ VE ARG R RDGS
Sbjct: 36 GYGFVEFDDLRDADDAVYELNGKDLCGE--RVIVEHARGPR---RDGSYGSGRSGYGYRR 90
Query: 64 --------PTKT---LFVINFDPIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFET 109
PT+T L V N R +D+K + G V + + R+N ++F +
Sbjct: 91 SGRDKYGPPTRTEYRLIVENLSS-RCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVS 149
Query: 110 QEEATKALESTDRSKLVDRVI 130
+ +ALE D +++ R I
Sbjct: 150 YSDMKRALEKLDGTEVNGRKI 170
>gi|302848854|ref|XP_002955958.1| hypothetical protein VOLCADRAFT_107013 [Volvox carteri f.
nagariensis]
gi|300258684|gb|EFJ42918.1| hypothetical protein VOLCADRAFT_107013 [Volvox carteri f.
nagariensis]
Length = 827
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 21/147 (14%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ F + A A+R L F ++ V WA D + K++
Sbjct: 228 GFGFIAFYNSAAATLALRKLSRPEFRLRGHQVQVMWA--------DPKRDEIGTEKVKSI 279
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI---------RRNFAFVQFETQEEATKALES 119
+V N P + E D++ F YG V V + RN+ F+ + + A +A+
Sbjct: 280 YVGNL-PEQYTENDLRAIFSQYGTVERVTLLYMPDDPTKLRNYTFINYTDRSSALRAVSE 338
Query: 120 TDRSK--LVDRVISVEYALKDDSERDD 144
+ K + D+ + V A K ++RDD
Sbjct: 339 AENKKHIMTDKELIVHMA-KPQAQRDD 364
>gi|403221223|dbj|BAM39356.1| splicing factor [Theileria orientalis strain Shintoku]
Length = 334
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR 63
+ +Y +AF+ F R A DA+ D + YDR +L VE+A + R D + ++
Sbjct: 49 TTNYTSYAFIDFASVRSAEDAVDSRDG--YEYDRYKLRVEFAGEGKPRKHDDDRRDRDRH 106
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRS 123
T VI+ P R + +K H G V +V I +V F + + AL D S
Sbjct: 107 RTDYRLVISNLPHGCRWQHLKDHMRKAGPVGYVNISHGKGYVDFIHKSDMKYALRKMDGS 166
Query: 124 KL 125
+L
Sbjct: 167 EL 168
>gi|126291113|ref|XP_001371339.1| PREDICTED: serine/arginine-rich splicing factor 6-like [Monodelphis
domestica]
Length = 340
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 78 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
RE+DI+R F YG +L V ++ + FV+FE +A A+ + L + VE+A
Sbjct: 13 VREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKDLCGERVIVEHA 70
>gi|443897423|dbj|GAC74764.1| hsp27-ere-tata-binding protein/Scaffold attachment factor
[Pseudozyma antarctica T-34]
Length = 285
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 57 KSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIRRNFAFVQFE 108
++ + P L V T ERD++ F YG + H R R FAFV +E
Sbjct: 65 RNTGDNNPGNNLHVSGLSKTTT-ERDLEEAFGKYGAIQRAQVMYDPHTREPRGFAFVTYE 123
Query: 109 TQEEATKALESTDRSKLVDRVISVEYA 135
E+A A+ + + S R I+V+ A
Sbjct: 124 KAEDAEAAITAMNGSDFQGRKITVDKA 150
>gi|431891168|gb|ELK02045.1| Splicing factor, arginine/serine-rich 4 [Pteropus alecto]
Length = 500
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 77 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135
+ RERD++R F+ YG +L V ++ + FV+F+ +A A+ + L + VE+A
Sbjct: 12 QARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHA 70
>gi|414887662|tpg|DAA63676.1| TPA: hypothetical protein ZEAMMB73_707044 [Zea mays]
Length = 207
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 11/82 (13%)
Query: 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEAT 114
R T +L V+N RT D+ F+ YG ++ + I R FAFV+++ ++EA
Sbjct: 14 RDTYSLLVLNIT-FRTTADDLFPLFDKYGEIVDIYIPRDRRTGDSRGFAFVRYKYEDEAQ 72
Query: 115 KALESTDRSKLVD-RVISVEYA 135
KA+E D +LVD R I V++A
Sbjct: 73 KAVERLD-GRLVDGREIMVQFA 93
>gi|294945440|ref|XP_002784681.1| arginine/serine-rich splicing factor, putative [Perkinsus marinus
ATCC 50983]
gi|239897866|gb|EER16477.1| arginine/serine-rich splicing factor, putative [Perkinsus marinus
ATCC 50983]
Length = 463
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 71 INFDPIRTRERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATKALESTDRSKLV 126
I P RE +++ F G V+ V+I R +AF+QF+++ A A+E D++K
Sbjct: 155 IGGLPSDVREAELEDRFGKIGRVVGVKICQSSRDTYAFLQFDSETAAADAIEDVDQTKFG 214
Query: 127 DRVISVEYALKDDSE 141
I V +A + +E
Sbjct: 215 GFTIKVAHATRQSTE 229
>gi|189055016|dbj|BAG38000.1| unnamed protein product [Homo sapiens]
Length = 288
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 111
AN P L V + T ERD++ F YG + V I R FAFV FE +
Sbjct: 112 ANPDPNCCLGVFGLS-LYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVD 170
Query: 112 EATKALESTDRSKLVDRVISVEYAL 136
+A +A E + +L R I V++++
Sbjct: 171 DAKEAKERANGMELDGRRIRVDFSI 195
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,233,611,924
Number of Sequences: 23463169
Number of extensions: 200428517
Number of successful extensions: 558007
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1947
Number of HSP's successfully gapped in prelim test: 11423
Number of HSP's that attempted gapping in prelim test: 509341
Number of HSP's gapped (non-prelim): 40124
length of query: 240
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 102
effective length of database: 9,121,278,045
effective search space: 930370360590
effective search space used: 930370360590
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 75 (33.5 bits)