BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026341
(240 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P92964|RSP31_ARATH Arginine/serine-rich-splicing factor RSP31 OS=Arabidopsis thaliana
GN=RSP31 PE=1 SV=2
Length = 264
Score = 293 bits (751), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 163/240 (67%), Positives = 187/240 (77%), Gaps = 19/240 (7%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 67
+G+AFVYFED+RDA DAIR LDN PFGY++RRLSVEWA+GERGR R +K+ +N +PTKT
Sbjct: 35 SGYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKT 94
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFVINFDPIRT+E DI++HFEPYG V +VRIRRNF+FVQFETQE+ATKALE+T RSK++D
Sbjct: 95 LFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILD 154
Query: 128 RVISVEYALKDDSERDDRYD--SPRRGGYG----RHSP-YGRSPSPAYRRRPSPDYGRGR 180
RV+SVEYALKDD ERDDR SPRR R SP YGR PSP RRPSPDYGR R
Sbjct: 155 RVVSVEYALKDDDERDDRNGGRSPRRSLSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRAR 214
Query: 181 SPAYDRYNGP-VYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRSRSPVRRSR 239
SP YDRY GP Y++RRSPD+G RRS DYGR RSP + RYRSRSPV R R
Sbjct: 215 SPEYDRYKGPAAYERRRSPDYG-----------RRSSDYGRQRSPGYDRYRSRSPVPRGR 263
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
+ +FV NF+ TR+ D++R F+ YG V V ++ +AFV FE + +A A+ D
Sbjct: 1 MRPVFVGNFE-YETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFP 59
Query: 125 L--VDRVISVEYA 135
R +SVE+A
Sbjct: 60 FGYEKRRLSVEWA 72
>sp|P92965|RSP40_ARATH Arginine/serine-rich-splicing factor RSP40 OS=Arabidopsis thaliana
GN=RSP40 PE=1 SV=2
Length = 350
Score = 197 bits (501), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 126/241 (52%), Positives = 155/241 (64%), Gaps = 14/241 (5%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN----QR 63
AGFAFVY ED+RDA DAIR LD FG RRL VEW + ERG + R
Sbjct: 35 AGFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMR 94
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRS 123
P+KTLFVINFD TR RD+++HFEPYG +++VRIRRNFAF+Q+E QE+AT+AL++++ S
Sbjct: 95 PSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNS 154
Query: 124 KLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPA 183
KL+D+VISVEYA+KDD R + + SP R RSPSP R R SPDYGRG SP
Sbjct: 155 KLMDKVISVEYAVKDDDARGNGH-SPERRRDRSPERRRRSPSPYKRERGSPDYGRGASPV 213
Query: 184 YDRYNGPVYDQRRSPDHGRHRSPVPVYDRRR-SPDYGRNRSPNFG---RYRSRSPVRRSR 239
+R SPD+GR RSP P RR SP+YGR+R N R R SP + SR
Sbjct: 214 -----AAYRKERTSPDYGRRRSPSPYKKSRRGSPEYGRDRRGNDSPRRRERVASPTKYSR 268
Query: 240 T 240
+
Sbjct: 269 S 269
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDR 122
K +F NF+ RE D++R F YG V V ++ FAFV E + +A A+ + DR
Sbjct: 1 MKPVFCGNFE-YDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDR 57
>sp|P92966|RSP41_ARATH Arginine/serine-rich-splicing factor RSP41 OS=Arabidopsis thaliana
GN=RSP41 PE=1 SV=2
Length = 356
Score = 182 bits (462), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 127/248 (51%), Positives = 151/248 (60%), Gaps = 28/248 (11%)
Query: 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPT-- 65
AGFAFVY ED+RDA DAIR LD +G RRL VEW + +RG S +
Sbjct: 35 AGFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRP 94
Query: 66 -KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
KTLFVINFD TR RD++RHFEPYG +++VRIRRNFAF+Q+E QE+AT+AL++T+ SK
Sbjct: 95 SKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSK 154
Query: 125 LVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAY 184
L+D+VISVEYA+KDD R + Y SP R RSPSP R R SPDYGRG SP
Sbjct: 155 LMDKVISVEYAVKDDDSRGNGY-SPERRRDRSPDRRRRSPSPYRRERGSPDYGRGASPVA 213
Query: 185 DRYNGPVYDQRRSPDHGR-HRSPVPVYDRRRSPDYG-----------------RNRSPNF 226
+ +R SPD+GR RSP P R SPDY RNRSP
Sbjct: 214 HKR------ERTSPDYGRGRRSPSPYKRARLSPDYKRDDRRRERVASPENGAVRNRSPRK 267
Query: 227 GRYRSRSP 234
GR SRSP
Sbjct: 268 GRGESRSP 275
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124
K +F NF+ RE D++R F YG V V ++ FAFV E + +A A+ + DR +
Sbjct: 1 MKPVFCGNFE-YDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFE 59
Query: 125 L--VDRVISVEYALKD 138
R + VE+ D
Sbjct: 60 YGRTGRRLRVEWTKND 75
>sp|Q66H68|RBM47_RAT RNA-binding protein 47 OS=Rattus norvegicus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 78/166 (46%), Gaps = 9/166 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IKR F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEETIKRSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRP 172
+ V A D E+ RY +GG G + PS Y P
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYSCDP 353
>sp|Q91WT8|RBM47_MOUSE RNA-binding protein 47 OS=Mus musculus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 9/166 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEETIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRP 172
+ V A D E+ RY +GG G + PS Y P
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYSCDP 353
>sp|Q9XSR3|RBM47_CANFA RNA-binding protein 47 OS=Canis familiaris GN=RBM47 PE=2 SV=1
Length = 592
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 197 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 250
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ S + ++L
Sbjct: 251 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAVLAMNSLNGTELE 309
Query: 127 DRVISVEYALKDDSERDDRY 146
+ V A D E+ RY
Sbjct: 310 GSCLEVTLAKPVDKEQYSRY 329
>sp|Q5R5P4|RBM47_PONAB RNA-binding protein 47 OS=Pongo abelii GN=RBM47 PE=2 SV=2
Length = 593
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYD 147
+ V A D E+ RY
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQ 328
>sp|A0AV96|RBM47_HUMAN RNA-binding protein 47 OS=Homo sapiens GN=RBM47 PE=1 SV=2
Length = 593
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 127 DRVISVEYALKDDSERDDRYD 147
+ V A D E+ RY
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQ 328
>sp|Q09442|SF3B4_CAEEL Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49
PE=1 SV=2
Length = 388
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 22/150 (14%)
Query: 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQ 62
++ ++ GF FV F + DA AI+ L+ I G+ + S N
Sbjct: 49 VTANHQGFGFVEFMGEEDADYAIKILNMIKL------------YGKPIKVNKASAHEKNM 96
Query: 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV-RIRRN--------FAFVQFETQEEA 113
+FV N DP E+ + F +G +L V +I R+ FAF+ F + E +
Sbjct: 97 DVGANIFVGNLDP-EVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEAS 155
Query: 114 TKALESTDRSKLVDRVISVEYALKDDSERD 143
ALE+ + L +R I+V YA K DS+ +
Sbjct: 156 DTALEAMNGQFLCNRAITVSYAFKRDSKGE 185
>sp|Q6IQ97|RBM41_DANRE RNA-binding protein 4.1 OS=Danio rerio GN=rbm4.1 PE=1 SV=1
Length = 419
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 105/254 (41%), Gaps = 41/254 (16%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
F FV+ + +A +AI+ L + + + ++VE ++G+ + + L
Sbjct: 37 FGFVHMDSKSEADEAIQNLHH--YMLNGMAMNVEMSKGK-------------PKTSTKLH 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N T + +++ FE YG V+ I +++AFV E E+A +A+ D + ++
Sbjct: 82 VGNISSSCTNQ-ELRAKFEEYGPVVECDIVKDYAFVHMERVEDAMEAISGLDNTAFQGKL 140
Query: 130 ISVEYALK------DDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSP--------D 175
+SV+ + ER Y + G + + P ++ S YR PS D
Sbjct: 141 MSVKLSTSRLRTAPGMGERTGCYRCGQEGHWSKECPLDQNGS--YREGPSSEGFGPVRFD 198
Query: 176 YGRGRSPAYDR-YNG-PVYDQRRSPDHGRHRS---PVPVYDR----RRSPDYGRNRSPNF 226
G R + R ++G P Y +P HG R VP Y R + YG
Sbjct: 199 SGGDRGRGFHRGFSGEPAYAGSFAPSHGFTRGAGYAVPGYGRGAGFESAMGYGMPAGYGV 258
Query: 227 GRYRSRSPVRRSRT 240
G S +PV S
Sbjct: 259 GADNSMAPVYGSEA 272
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
+FV N P T E +I+ F YG + I +NF FV +++ EA +A+++ L
Sbjct: 4 IFVGNLSPNTTAE-EIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYMLNG 62
Query: 128 RVISVE 133
++VE
Sbjct: 63 MAMNVE 68
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 17/149 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-- 66
GF FV FED AA A+ L+ + F ++L V A+ + R ++ K R K
Sbjct: 260 GFGFVNFEDHAAAAKAVDELNELEF--KGQKLYVGRAQKKYERLQELKKQYEAARLEKLA 317
Query: 67 -----TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEAT 114
LFV N D E+ +K F P+G + ++ R+ F FV F T EEAT
Sbjct: 318 KYQGVNLFVKNLDDSIDDEK-LKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEAT 376
Query: 115 KALESTDRSKLVDRVISVEYALKDDSERD 143
KA+ ++ + + + V A + + R+
Sbjct: 377 KAITEKNQQIVAGKPLYVAIAQRKEVRRN 405
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 13/121 (10%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF FV+FE++ DA DAI +D + +++ ++ +R + K+ +
Sbjct: 167 GFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFT-----NV 221
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTD 121
+V N D T + + + F YG + + R F FV FE A KA++ +
Sbjct: 222 YVKNIDQ-ETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELN 280
Query: 122 R 122
Sbjct: 281 E 281
Score = 37.4 bits (85), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 19/131 (14%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+A+V F D AI L+ + + W++ + + GS + +
Sbjct: 80 GYAYVNFHDHEAGPKAIEQLNYTLI--KGKPCRIMWSQRDPSLRKKGSGN---------I 128
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTD 121
++ N P + + F +GN+L ++ R F FV FE + +A A+E+ D
Sbjct: 129 YIKNLHP-AIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVD 187
Query: 122 RSKLVDRVISV 132
+ D+ + V
Sbjct: 188 GMLMNDQEVYV 198
>sp|Q3MHX3|RBM4_BOVIN RNA-binding protein 4 OS=Bos taurus GN=RBM4 PE=2 SV=1
Length = 362
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 25/191 (13%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-L 68
+ FV+ ED A DAIR L + + ++VE ++ N+ T T L
Sbjct: 37 YGFVHIEDKTAAEDAIRNLHH--YKLHGVNINVEASK--------------NKSKTSTKL 80
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
V N P T ++++ FE YG V+ I +++AFV E E+A +A+ D ++ +
Sbjct: 81 HVGNISPTCTN-KELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGK 139
Query: 129 VISVEYALK------DDSERDDRYDSPRRGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRS 181
+ V+ + ++ Y + G + + P RS A + + + YG R+
Sbjct: 140 RMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRSGRVADFTEQYNEQYGAVRT 199
Query: 182 PAYDRYNGPVY 192
P Y +Y
Sbjct: 200 PYTMGYGDSLY 210
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 128 RVISVE 133
I+VE
Sbjct: 63 VNINVE 68
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 25/145 (17%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG-----------ERGRHRDGSK 57
GF FV FE+ DAA A+ L+ F D + EW G R R+ K
Sbjct: 256 GFGFVNFENADDAARAVESLNGHKF--DDK----EWYVGRAQKKSERETELRVRYEQNLK 309
Query: 58 SMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQ 110
A++ + L+V N DP + E+ +K F P+G V ++ R+ FV F T
Sbjct: 310 EAADKFQSSNLYVKNLDPSISDEK-LKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATP 368
Query: 111 EEATKALESTDRSKLVDRVISVEYA 135
EEAT+A+ + + + V A
Sbjct: 369 EEATEAMSQLSGKMIESKPLYVAIA 393
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 19/131 (14%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+ +V F + +DAA AI+ L+ IP Y + + V ++ HRD S + +
Sbjct: 78 GYGYVNFTNPQDAARAIQELNYIPL-YGKP-IRVMYS------HRDPS---VRRSGAGNI 126
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTD 121
F+ N D + + F +GN++ ++ + + FVQ+ +E A KA+E +
Sbjct: 127 FIKNLDE-SIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 122 RSKLVDRVISV 132
L D+ + V
Sbjct: 186 GMLLNDKQVYV 196
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+ FV + ++ A AI L+ + + + R ER S AN+ +
Sbjct: 165 GYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQER-------DSTANKTKFTNV 217
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTD 121
+V N T + D+K F YG + + ++ F FV FE ++A +A+ES +
Sbjct: 218 YVKNLAE-STTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276
Query: 122 RSKLVDR 128
K D+
Sbjct: 277 GHKFDDK 283
>sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 OS=Mus musculus GN=Rbm4 PE=1 SV=1
Length = 361
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 23/190 (12%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
+ FV+ ED A DAIR L + + ++VE ++ +KS A+ + L
Sbjct: 37 YGFVHIEDKTAAEDAIRNLHH--YKLHGVNINVEASK---------NKSKASTK----LH 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N P T + +++ FE YG V+ I +++AFV E E+A +A+ D ++ +
Sbjct: 82 VGNISPTCTNQ-ELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKR 140
Query: 130 ISVEYALK------DDSERDDRYDSPRRGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSP 182
+ V+ + ++ Y + G + + P RS A + + YG R+P
Sbjct: 141 MHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRSGRVADLTEQYNEQYGAVRTP 200
Query: 183 AYDRYNGPVY 192
Y +Y
Sbjct: 201 YTMSYGDSLY 210
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 128 RVISVE 133
I+VE
Sbjct: 63 VNINVE 68
>sp|Q4R979|RBM4_MACFA RNA-binding protein 4 OS=Macaca fascicularis GN=RBM4 PE=2 SV=1
Length = 364
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 25/191 (13%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-L 68
+ FV+ ED A DAIR L + + ++VE ++ N+ T T L
Sbjct: 37 YGFVHIEDKTAAEDAIRNLHH--YKLHGVNINVEASK--------------NKSKTSTKL 80
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
V N P T ++++ FE YG V+ I +++AFV E E+A +A+ D ++ +
Sbjct: 81 HVGNISPTCTN-KELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGK 139
Query: 129 VISVEYALK------DDSERDDRYDSPRRGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRS 181
+ V+ + ++ Y + G + + P RS A + + YG R+
Sbjct: 140 RMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRSGRVADLTEQYNEQYGAVRT 199
Query: 182 PAYDRYNGPVY 192
P Y +Y
Sbjct: 200 PYTMSYGDSLY 210
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 128 RVISVE 133
I+VE
Sbjct: 63 VNINVE 68
>sp|Q9BWF3|RBM4_HUMAN RNA-binding protein 4 OS=Homo sapiens GN=RBM4 PE=1 SV=1
Length = 364
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 25/191 (13%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-L 68
+ FV+ ED A DAIR L + + ++VE ++ N+ T T L
Sbjct: 37 YGFVHIEDKTAAEDAIRNLHH--YKLHGVNINVEASK--------------NKSKTSTKL 80
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
V N P T ++++ FE YG V+ I +++AFV E E+A +A+ D ++ +
Sbjct: 81 HVGNISPTCTN-KELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGK 139
Query: 129 VISVEYALK------DDSERDDRYDSPRRGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRS 181
+ V+ + ++ Y + G + + P RS A + + YG R+
Sbjct: 140 RMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRSGRVADLTEQYNEQYGAVRT 199
Query: 182 PAYDRYNGPVY 192
P Y +Y
Sbjct: 200 PYTMSYGDSLY 210
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 128 RVISVE 133
I+VE
Sbjct: 63 VNINVE 68
>sp|Q7SG09|MRD1_NEUCR Multiple RNA-binding domain-containing protein 1 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=mrd-1 PE=3 SV=1
Length = 827
Score = 52.4 bits (124), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 17/149 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA-RG----ERGRHRDGSKSMANQR 63
GF FV F A A++ +D D ++SV+ + RG E R D +K ANQ
Sbjct: 646 GFGFVAFRTKDQAQAALKVMDGQVL--DAHKISVKASHRGLDAAEERRREDMAKKAANQ- 702
Query: 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKA 116
T V+ P +++++ F YG ++ +RI R FAF +F T +EA A
Sbjct: 703 --GTKLVVKNLPFEVTKKEVRTLFSAYGKLVALRIPKKFNQSSRGFAFAEFSTAKEALNA 760
Query: 117 LESTDRSKLVDRVISVEYALKDDSERDDR 145
S + ++ R + +++A +D + +D+
Sbjct: 761 FNSLKDTHILGRRLVIDFAQAEDIDPEDQ 789
Score = 33.1 bits (74), Expect = 1.6, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRI--RRNFAFVQFETQEEATKALESTD 121
+ +FV N P T E + ++HF G V V++ R+ FV +++ E+A +A++ +
Sbjct: 4 SSRIFVKNLPPTIT-EAEFRKHFSAEGRQVTDVKLIPARHIGFVGYKSAEDAARAVKYFN 62
Query: 122 RSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSP 159
RS + ISV+ A K ++ ++ SP +G P
Sbjct: 63 RSFIRMSRISVDIA-KPIADSKPQHKSPSKGSSKDADP 99
>sp|Q9BDY9|RBM4_RABIT RNA-binding protein 4 OS=Oryctolagus cuniculus GN=RBM4 PE=2 SV=1
Length = 359
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 78/190 (41%), Gaps = 23/190 (12%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
+ FV+ ED A DAIR L + G + + S + + L
Sbjct: 37 YGFVHIEDKTAAEDAIRNLHHYKL---------------HGVNINVEASKNKSKASTKLH 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N P T + +++ FE YG V+ I +++AFV E E+A +A+ D ++ +
Sbjct: 82 VGNISPTCTNQ-ELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKR 140
Query: 130 ISVEYALK------DDSERDDRYDSPRRGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSP 182
+ V+ + ++ Y + G + + P R+ A + + + YG R+P
Sbjct: 141 MHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRTGRVADFTEQYNEQYGAVRTP 200
Query: 183 AYDRYNGPVY 192
Y +Y
Sbjct: 201 YTMGYGESMY 210
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 128 RVISVE 133
I+VE
Sbjct: 63 VNINVE 68
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 105/263 (39%), Gaps = 54/263 (20%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-- 66
GF FV FE+ A A+ L++ + +++ V A+ +R R + K N R K
Sbjct: 273 GFGFVNFENHESAVKAVDELNDKEI--NGQKIYVGRAQKKRERLEELKKQYENTRLEKLS 330
Query: 67 -----TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEAT 114
LF+ N D E+ ++ F+P+G++ R+ + F FV F + EEAT
Sbjct: 331 KYQGVNLFIKNLDDTIDSEK-LEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEAT 389
Query: 115 KALESTDRSKLVDRVISVEYALKDDSERDD------------RYDSPRRGGYGRHSPYGR 162
KA+ ++ + + + V A + D R ++ GG P
Sbjct: 390 KAITEMNQRMIYGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAATGGI----PGQF 445
Query: 163 SPSPAYRRRPS--PDYGRGRSPAYDRYNGPVYD-----------QRRSPDHGRHRSPVPV 209
P Y ++P P GRG P + GP Q + P G + PVPV
Sbjct: 446 IPPMFYGQQPGFFPPNGRGNGP----FPGPNPQMMMPRGQIPPPQGQWPRPGPNGQPVPV 501
Query: 210 YDRRRSPDYGR--NRSPNFGRYR 230
Y P YG N N GR +
Sbjct: 502 YG--MPPVYGGDFNNGANGGRQQ 522
Score = 34.3 bits (77), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 80 ERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISV 132
E + K+ FE YG + + + ++ F FV FE E A KA++ + ++ + I V
Sbjct: 245 EEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYV 304
Query: 133 EYALK 137
A K
Sbjct: 305 GRAQK 309
Score = 30.8 bits (68), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 43 EWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN- 101
E + G + + S + +L+V +P E + F P G V +R+ R+
Sbjct: 28 ETEQTASGETEEAADSAQVSDTSASLYVGELNP-SVNEALLFEIFSPIGQVASIRVCRDA 86
Query: 102 -------FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSER 142
+A+V F E+ KA+E + S + R + ++ +D S R
Sbjct: 87 VTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLR 134
>sp|Q64LC9|RBM4B_RAT RNA-binding protein 4B OS=Rattus norvegicus GN=Rbm4b PE=2 SV=2
Length = 357
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 78/190 (41%), Gaps = 23/190 (12%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
+ FV+ ED A DAIR L + G + + S + + L
Sbjct: 37 YGFVHIEDKTAAEDAIRNLHHYKL---------------HGVNINVEASKNKSKASTKLH 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N P T + +++ FE YG V+ I +++AFV E E+A +A+ D ++ +
Sbjct: 82 VGNISPTCTNQ-ELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKR 140
Query: 130 ISVEYALK------DDSERDDRYDSPRRGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSP 182
+ V+ + ++ Y + G + + P R+ A + + + YG R+P
Sbjct: 141 MHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRTGRVADFTEQYNEQYGAVRTP 200
Query: 183 AYDRYNGPVY 192
Y +Y
Sbjct: 201 YTMGYGESMY 210
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 128 RVISVE 133
I+VE
Sbjct: 63 VNINVE 68
>sp|Q8VE92|RBM4B_MOUSE RNA-binding protein 4B OS=Mus musculus GN=Rbm4b PE=1 SV=1
Length = 357
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 78/190 (41%), Gaps = 23/190 (12%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
+ FV+ ED A DAIR L + G + + S + + L
Sbjct: 37 YGFVHIEDKTAAEDAIRNLHHYKL---------------HGVNINVEASKNKSKASTKLH 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N P T + +++ FE YG V+ I +++AFV E E+A +A+ D ++ +
Sbjct: 82 VGNISPTCTNQ-ELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKR 140
Query: 130 ISVEYALK------DDSERDDRYDSPRRGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSP 182
+ V+ + ++ Y + G + + P R+ A + + + YG R+P
Sbjct: 141 MHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRTGRVADFTEQYNEQYGAVRTP 200
Query: 183 AYDRYNGPVY 192
Y +Y
Sbjct: 201 YTMGYGESMY 210
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 128 RVISVE 133
I+VE
Sbjct: 63 VNINVE 68
>sp|Q9BQ04|RBM4B_HUMAN RNA-binding protein 4B OS=Homo sapiens GN=RBM4B PE=1 SV=1
Length = 359
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 85/190 (44%), Gaps = 23/190 (12%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
+ FV+ ED A DAIR L + + ++VE ++ +KS A+ + L
Sbjct: 37 YGFVHIEDKTAAEDAIRNLHH--YKLHGVNINVEASK---------NKSKASTK----LH 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N P T + +++ FE YG V+ I +++AFV E E+A +A+ D ++ +
Sbjct: 82 VGNISPTCTNQ-ELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKR 140
Query: 130 ISVEYALK------DDSERDDRYDSPRRGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSP 182
+ V+ + ++ Y + G + + P R+ A + + + YG R+P
Sbjct: 141 MHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRTGRVADFTEQYNEQYGAVRTP 200
Query: 183 AYDRYNGPVY 192
Y +Y
Sbjct: 201 YTMGYGESMY 210
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 128 RVISVE 133
I+VE
Sbjct: 63 VNINVE 68
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 51.2 bits (121), Expect = 6e-06, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 21/150 (14%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPF-GY-------DRRRLSVEWARGERGRHRDGSKSMA 60
GF F+ F + A + I+ L+ GY D+ +V+ R + +S+
Sbjct: 725 GFGFIEFSSKQGAYECIKKLNGSSIDGYEISLKLSDKNETNVQEINKRRELPENSKQSIK 784
Query: 61 NQ-----RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFE 108
+ +P+ + + N P + ++I++ F YG + VRI R F FV+F
Sbjct: 785 SNGGQPNKPSSKIIIKNL-PFESTIKEIRKLFTAYGEIQSVRIPKKPNGGHRGFGFVEFL 843
Query: 109 TQEEATKALESTDRSKLVDRVISVEYALKD 138
T+EEA A+E+ S R + ++YA +D
Sbjct: 844 TEEEAKNAMEALGNSHFYGRHLVLQYAEQD 873
Score = 30.8 bits (68), Expect = 8.1, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 10/68 (14%)
Query: 75 PIRTRERDIKRHFEPYGNVLHVRI------RRNFAFVQFETQEEATKALEST----DRSK 124
P ++ K HFE +G V +I R F F+ F T++ A AL D SK
Sbjct: 12 PKHLTDKRFKEHFEKFGTVTDAKIIKKDGKSRLFGFIGFSTEQSAKNALSLNGTFIDTSK 71
Query: 125 LVDRVISV 132
+V +V
Sbjct: 72 IVVETATV 79
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 17/148 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-- 66
GF FV FED A A+ L++ + +++ V A+ +R R + K R K
Sbjct: 274 GFGFVNFEDHESAVKAVEELNDKEI--NGQKIYVGRAQKKRERLEELKKQYEAVRLEKLA 331
Query: 67 -----TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEAT 114
LFV N D E+ ++ F+P+G + ++ + F FV F T EEAT
Sbjct: 332 KYQGVNLFVKNLDDTIDSEK-LEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEAT 390
Query: 115 KALESTDRSKLVDRVISVEYALKDDSER 142
KA+ + + + + V A + D R
Sbjct: 391 KAITEMNTRMINGKPLYVALAQRKDVRR 418
Score = 35.0 bits (79), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALES 119
++V N D + E ++ F P+G + + + ++ F FV FE E A KA+E
Sbjct: 234 NIYVKNID-LNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEE 292
Query: 120 TDRSKLVDRVISVEYALK 137
+ ++ + I V A K
Sbjct: 293 LNDKEINGQKIYVGRAQK 310
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 21/147 (14%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRR-LSVEWARGERGRHRDGSKSMANQRPTKT 67
G+A++ F+ ADA R LD + F + R + + W++ + G + G
Sbjct: 53 GYAYINFQQP---ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSG---------VGN 100
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI------RRNFAFVQFETQEEATKALESTD 121
+F+ N D + + F +GN+L ++ R + FV FETQE A +A+++ +
Sbjct: 101 VFIKNLDE-SIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMN 159
Query: 122 RSKLVDRVISVEYALKDDSERDDRYDS 148
L DR + V + K ER+ Y +
Sbjct: 160 GMLLNDRKVFVGH-FKSRRERELEYGA 185
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRD-GSKSMANQRPTKT 67
G+ FV+FE A AI+ ++ + + R++ V + R R + G+K M
Sbjct: 139 GYGFVHFETQEAANRAIQTMNGMLL--NDRKVFVGHFKSRRERELEYGAKVME----FTN 192
Query: 68 LFVINF--DPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALE 118
+++ NF D R R+I F +GN L V++ R F FV + EEA KA+
Sbjct: 193 VYIKNFGEDMDDKRLREI---FSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVS 249
Query: 119 STDRSKLVDRVISVEYALK 137
+ ++ R+I V A K
Sbjct: 250 EMNGKEVNGRMIYVGRAQK 268
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 95/229 (41%), Gaps = 35/229 (15%)
Query: 9 GFAFVYFEDDRDAADAIRGLDN-------IPFGYDRRRLSVEWARGERGRHRDGSKSM-A 60
GF FV + + +A A+ ++ I G ++R+ +GE R + K
Sbjct: 232 GFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIE---RQGELKRKFEQIKQERI 288
Query: 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEAT 114
N+ L+V N D +R +++ F PYG + ++ + F FV F + EEAT
Sbjct: 289 NRYQGVNLYVKNLDDGIDDDR-LRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEAT 347
Query: 115 KALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSP 174
KA+ +++ R++S + ++R + + Y + R P P
Sbjct: 348 KAV-----TEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQR-------LATMRAMPGP 395
Query: 175 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 223
G + PA Y P Q P + SP PV R++P + ++S
Sbjct: 396 LLGSFQQPA--NYFLPAMPQ---PPNRTFYSPNPVAPVRQAPQWTSHQS 439
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 17/148 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT- 67
GF FV F + DA + L+N F + L V A+ + R ++ K R K
Sbjct: 257 GFGFVNFVNHEDAVKCVEELNNTEF--KGQPLYVNRAQKKYERQQELKKQYEATRMEKMA 314
Query: 68 ------LFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEAT 114
LF+ N D ++ ++ F PYG + ++ + F FV F T EEAT
Sbjct: 315 KYQGINLFIKNLDD-SIDDKKLEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEAT 373
Query: 115 KALESTDRSKLVDRVISVEYALKDDSER 142
KA+ ++ + + + V A + D R
Sbjct: 374 KAITEKNQQIVAGKPLYVAIAQRKDVRR 401
Score = 37.4 bits (85), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 65/153 (42%), Gaps = 18/153 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER-GRHRDGSKSMANQRPTKT 67
GF +V+FE+D A++AI L+ + + ++ ER + + + N
Sbjct: 164 GFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEEMKANFTN------ 217
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALEST 120
+++ N + T +++ + +G V + R F FV F E+A K +E
Sbjct: 218 VYIKNIN-TETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEEL 276
Query: 121 DRSKLVDRVISVEYALKD---DSERDDRYDSPR 150
+ ++ + + V A K E +Y++ R
Sbjct: 277 NNTEFKGQPLYVNRAQKKYERQQELKKQYEATR 309
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 59/138 (42%), Gaps = 19/138 (13%)
Query: 2 CISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN 61
I+ G+A+V F D A AI L+ P + + W++ + + G+ +
Sbjct: 70 AITKTSLGYAYVNFNDHDAAKTAIEKLNFTPI--KGKLCRIMWSQRDPSLRKKGAGN--- 124
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEAT 114
+F+ N P + + F +GN+L ++ + F +V FE E A+
Sbjct: 125 ------IFIKNLHP-DIDNKALYDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESAS 177
Query: 115 KALESTDRSKLVDRVISV 132
+A+++ + L + I V
Sbjct: 178 EAIDALNGMLLNGQEIYV 195
>sp|P86049|RBM46_MOUSE Probable RNA-binding protein 46 OS=Mus musculus GN=Rbm46 PE=4 SV=1
Length = 533
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 80/184 (43%), Gaps = 15/184 (8%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L F + V+WA E+ + QR K L
Sbjct: 185 GFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-----TMQR-VKVL 238
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK F + G V V+ R++AFV F +E+A A+ S K +
Sbjct: 239 YVRNLM-ISTTEETIKAEFSKFKPGAVERVKKLRDYAFVHFFHREDAVAAM-SVMNGKCI 296
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAY-D 185
D S+E L +++ + R+ G+ SP + + S G+ P
Sbjct: 297 DGA-SIEVTLAKPVNKENTW---RQHLNGQISPNSENLLVYANKEESHSKSLGKPPTLPT 352
Query: 186 RYNG 189
R NG
Sbjct: 353 RLNG 356
>sp|Q5PPI1|SRSF9_RAT Serine/arginine-rich splicing factor 9 OS=Rattus norvegicus
GN=Srsf9 PE=1 SV=1
Length = 221
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
FAFV FED RDA DAI G + +G R R+ A G RG S++ R +
Sbjct: 54 FAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRAYGGRGGWPRASRNGPPTRRSDFRV 113
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 125
+++ P +D+K H G+V + ++++ V++ +E+ AL D +K
Sbjct: 114 LVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 170
Score = 30.8 bits (68), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-----FAFVQFETQEEATKAL 117
++V N P RE+D++ F YG + + ++ FAFV+FE +A A+
Sbjct: 16 IYVGNL-PTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAI 69
>sp|Q8TBY0|RBM46_HUMAN Probable RNA-binding protein 46 OS=Homo sapiens GN=RBM46 PE=2 SV=1
Length = 533
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 71/153 (46%), Gaps = 14/153 (9%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L F + V+WA E+ + QR K L
Sbjct: 185 GFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-----TMQR-VKVL 238
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK F + G V V+ R++AFV F +E+A A+ S K +
Sbjct: 239 YVRNLM-ISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAAM-SVMNGKCI 296
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSP 159
D S+E L +++ + R+ G+ SP
Sbjct: 297 DGA-SIEVTLAKPVNKENTW---RQHLNGQISP 325
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 68/145 (46%), Gaps = 9/145 (6%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG-----ERGRHRDGSKSMANQR 63
G+ FV F D+ + A+ ++ + R+ + ++ +++ +
Sbjct: 219 GYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESD 278
Query: 64 PTKT-LFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALEST 120
P T +FV DP E +++ F PYG ++HV+I + FVQF T+ A +AL S
Sbjct: 279 PNNTTIFVGGLDPT-VAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGTRASAEQALSSL 337
Query: 121 DRSKLVDRVISVEYALKDDSERDDR 145
+ ++L + I + + S++ D+
Sbjct: 338 NGTQLGGQSIRLSWGRSPSSKQTDQ 362
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 17/148 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-- 66
GF FV FE+ A +A++ +++ D ++L V A+ +R R + + + R K
Sbjct: 280 GFGFVNFENHESALNAVKEMNDKEI--DGQKLYVGRAQKKRERLDELKRLYESTRLEKLS 337
Query: 67 -----TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEAT 114
LFV N D E+ ++ F+P+G + R+ + F FV F + EEAT
Sbjct: 338 KYQGVNLFVKNLDDSIDSEK-LEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEAT 396
Query: 115 KALESTDRSKLVDRVISVEYALKDDSER 142
KA+ ++ + + + V A + D R
Sbjct: 397 KAITEMNQRMIQGKPLYVALAQRKDVRR 424
>sp|Q06AT9|RBM4B_PIG RNA-binding protein 4B OS=Sus scrofa GN=RBM4B PE=2 SV=1
Length = 359
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 77/190 (40%), Gaps = 23/190 (12%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
+ FV+ ED A DAIR L + G + + S + + L
Sbjct: 37 YGFVHIEDKTAAEDAIRNLHHYKL---------------HGVNINVEASKNKSKASTKLH 81
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRV 129
V N P T + +++ FE YG V+ I +++AFV E E+A +A+ D ++ +
Sbjct: 82 VGNISPTCTNQ-ELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKR 140
Query: 130 ISVEYALK------DDSERDDRYDSPRRGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSP 182
+ V+ + ++ Y + G + + P R+ A + + + YG R P
Sbjct: 141 MHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRTGRVADFTEQYNEQYGAVRPP 200
Query: 183 AYDRYNGPVY 192
Y +Y
Sbjct: 201 YTMGYGESMY 210
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 128 RVISVE 133
I+VE
Sbjct: 63 VNINVE 68
>sp|Q4R2Z0|RBM46_MACFA Probable RNA-binding protein 46 OS=Macaca fascicularis GN=RBM46
PE=2 SV=2
Length = 485
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 91/215 (42%), Gaps = 22/215 (10%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L F + V+WA E+ + + K L
Sbjct: 185 GFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE------TMQRVKVL 238
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N I T E IK F + G V V+ R++AFV F +E+A A+ S K +
Sbjct: 239 YVRNL-MISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAAM-SVMNGKCI 296
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAY-D 185
D S+E L +++ + R+ G+ SP + + S G+ P
Sbjct: 297 DGA-SIEVTLAKPVNKENTW---RQHLNGQISPNSENLIVFANKEESHPKTLGKLPTLPA 352
Query: 186 RYNG------PVYDQRRSPDH-GRHRSPVPVYDRR 213
R NG P ++ P + G +P+ +Y +
Sbjct: 353 RLNGQHSPSPPEVERCTYPFYPGTKLTPISMYSLK 387
>sp|Q9D0B0|SRSF9_MOUSE Serine/arginine-rich splicing factor 9 OS=Mus musculus GN=Srsf9
PE=1 SV=1
Length = 222
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF 69
FAFV FED RDA DAI G + +G R R+ G RG G+++ R +
Sbjct: 55 FAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGGRGGWPRGARNGPPTRRSDFRV 114
Query: 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 125
+++ P +D+K H G+V + ++++ V++ +E+ AL D +K
Sbjct: 115 LVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 171
Score = 30.8 bits (68), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 18/83 (21%)
Query: 40 LSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR 99
+S WA ERG DG ++V N P RE+D++ F YG + + ++
Sbjct: 1 MSSGWAD-ERGGEGDGR-----------IYVGNL-PSDVREKDLEDLFYKYGRIREIELK 47
Query: 100 RN-----FAFVQFETQEEATKAL 117
FAFV+FE +A A+
Sbjct: 48 NRHGLVPFAFVRFEDPRDAEDAI 70
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 64/148 (43%), Gaps = 17/148 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-- 66
GF FV F D AA A+ L+ F + L V A+ + R + K R K
Sbjct: 272 GFGFVNFVDHNAAAKAVEELNGKEF--KSQALYVGRAQKKYERAEELKKQYEQYRLEKLA 329
Query: 67 -----TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEAT 114
LF+ N D E+ +K F PYG + R+ R+ F FV F + EEAT
Sbjct: 330 KFQGVNLFIKNLDDSIDDEK-LKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEAT 388
Query: 115 KALESTDRSKLVDRVISVEYALKDDSER 142
KA+ ++ + + + V A + D R
Sbjct: 389 KAMTEKNQQIVAGKPLYVAIAQRKDVRR 416
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF FV+F+++ DA DAI ++ + +++ + +R + +K+ +
Sbjct: 179 GFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKA-----NFTNI 233
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTD 121
+V N D + T + + ++ F YG ++ + ++ F FV F A KA+E +
Sbjct: 234 YVKNID-VETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELN 292
Query: 122 RSKLVDRVISV 132
+ + + V
Sbjct: 293 GKEFKSQALYV 303
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 17/148 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-- 66
GF FV +E A A+ L++ + +++ V A+ +R R + K N R K
Sbjct: 274 GFGFVNYEGHEAAVKAVEELNDKEI--NGQKIYVGRAQKKRERMEELKKQYENTRLEKLS 331
Query: 67 -----TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEAT 114
LF+ N D E+ ++ F+P+G + R+ + F FV F + EEAT
Sbjct: 332 KYQGVNLFIKNLDDTIDSEK-LEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEAT 390
Query: 115 KALESTDRSKLVDRVISVEYALKDDSER 142
KA+ ++ + + V A + D R
Sbjct: 391 KAITEMNQRMFFGKPLYVALAQRKDVRR 418
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALES 119
++V N D + E D+K+ F PYG + + + ++ F FV +E E A KA+E
Sbjct: 234 NIYVKNID-LEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEE 292
Query: 120 TDRSKLVDRVISVEYALK 137
+ ++ + I V A K
Sbjct: 293 LNDKEINGQKIYVGRAQK 310
Score = 30.8 bits (68), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Query: 53 RDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--------FAF 104
+G+ S T +L+V + E + F P G V +R+ R+ +A+
Sbjct: 39 EEGADSANVAESTASLYVGELN-TSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAY 97
Query: 105 VQFETQEEATKALESTDRSKLVDRVISVEYALKDDSER 142
V + E+ KA+E + S + R + ++ +D S R
Sbjct: 98 VNYHKMEDGEKAIEELNYSPIEGRPCRIMWSQRDPSAR 135
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 17/148 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT- 67
GF FV +E DA A+ L++ + +L V A+ + R K R K
Sbjct: 260 GFGFVNYEKHEDAVKAVEALNDSEL--NGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMA 317
Query: 68 ------LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEAT 114
LFV N D E+ ++ F PYG + ++ R F FV F T EEAT
Sbjct: 318 KYQGVNLFVKNLDDSVDDEK-LEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEAT 376
Query: 115 KALESTDRSKLVDRVISVEYALKDDSER 142
KA+ ++ + + + V A + D R
Sbjct: 377 KAITEKNQQIVAGKPLYVAIAQRKDVRR 404
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 13/124 (10%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF FV+FE++ A +AI L+ + ++ +R ER + +K+ L
Sbjct: 167 GFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYT-----NL 221
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTD 121
+V N + T E+ + F +G ++ + ++ F FV +E E+A KA+E+ +
Sbjct: 222 YVKNINSETTDEQ-FQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 280
Query: 122 RSKL 125
S+L
Sbjct: 281 DSEL 284
Score = 34.7 bits (78), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 55 GSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQ 106
GS+S + + + +L+V + +P E + F P G+V +R+ R+ +A+V
Sbjct: 27 GSESQSVENSSASLYVGDLEP-SVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVN 85
Query: 107 FETQEEATKALESTDRSKLVDRVISVEYALKDDSER 142
F E KA+E + + + R+ + ++ +D S R
Sbjct: 86 FNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLR 121
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 17/148 (11%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-- 66
GF FV FE+ AA A+ L++ + +++ V A+ +R R + K R K
Sbjct: 289 GFGFVNFEEHEAAAKAVEELNDKEI--NGQKIYVGRAQKKRERTEELKKQYEAVRLEKLS 346
Query: 67 -----TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEAT 114
LFV N D E+ ++ F+P+G + ++ + F FV F T EEAT
Sbjct: 347 KYQGVNLFVKNLDEQIDSEK-LEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEAT 405
Query: 115 KALESTDRSKLVDRVISVEYALKDDSER 142
KA+ ++ + + + V A + D R
Sbjct: 406 KAITEMNQRMVNGKPLYVALAQRKDVRR 433
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 19/138 (13%)
Query: 2 CISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN 61
+S G+A+V + D AI L+ P + R + W++ + R G +
Sbjct: 102 AVSKKSLGYAYVNYHKLEDGEKAIEELNYTPV--EGRPCRIMWSQRDPSARRSGDGN--- 156
Query: 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEAT 114
+F+ N P + + F +G +L V++ + F FV +ET+E A
Sbjct: 157 ------IFIKNLHP-AIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQ 209
Query: 115 KALESTDRSKLVDRVISV 132
A+ES + L DR + V
Sbjct: 210 AAIESVNGMLLNDREVYV 227
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 15/131 (11%)
Query: 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-L 68
F FV++E + A AI ++ + DR E G+ +D + + T +
Sbjct: 197 FGFVHYETEEAAQAAIESVNGMLLN-DR-----EVYVGKHVSKKDRESKLEEMKANYTNI 250
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTD 121
+V N D T E++ + F P+G + + + ++ F FV FE E A KA+E +
Sbjct: 251 YVKNIDLAYT-EKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELN 309
Query: 122 RSKLVDRVISV 132
++ + I V
Sbjct: 310 DKEINGQKIYV 320
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 20/131 (15%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRR-LSVEWARGERGRHRDGSKSMANQRPTKT 67
G+A+V F+ ADA R LD + F + + + + W++ + + G
Sbjct: 53 GYAYVNFQQP---ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSG---------VGN 100
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI------RRNFAFVQFETQEEATKALESTD 121
+F+ N D + + F +GN+L ++ + +AFV FETQE A KA+E +
Sbjct: 101 VFIKNLDK-SIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMN 159
Query: 122 RSKLVDRVISV 132
L DR + V
Sbjct: 160 GMLLNDRKVFV 170
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 13/136 (9%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
G+AFV+FE A AI ++ + DR+ V R + + R+ A + +
Sbjct: 139 GYAFVHFETQEAADKAIEKMNGMLLN-DRK---VFVGRFKSRKEREAELG-AKAKEFTNV 193
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTD 121
++ NF + +K F +G L V++ R+ F FV +E E+A KA+E +
Sbjct: 194 YIKNFGE-EVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 122 RSKLVDRVISVEYALK 137
++ ++I V A K
Sbjct: 253 GKEISGKIIFVGRAQK 268
Score = 37.7 bits (86), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 20/128 (15%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGS-----KSMANQR 63
GF FV +E DA A+ ++ G + + R ++ R + + +R
Sbjct: 232 GFGFVSYEKHEDANKAVEEMN----GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQER 287
Query: 64 PTK----TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEA 113
++ L++ N D E+ +++ F P+G++ ++ + F FV F + EEA
Sbjct: 288 ISRYQGVNLYIKNLDDTIDDEK-LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEA 346
Query: 114 TKALESTD 121
TKA+ +
Sbjct: 347 TKAVTEMN 354
>sp|Q7TP47|HNRPQ_RAT Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus
GN=Syncrip PE=2 SV=1
Length = 533
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + +VEWA + MA K L
Sbjct: 197 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADP---IEDPDPEVMAK---VKVL 250
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AF+ F+ ++ A KA+E + L
Sbjct: 251 FVRNLANTVTEEI-LEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGE 309
Query: 129 VISVEYALKDDSERDDR 145
I + +A D +R +R
Sbjct: 310 NIEIVFAKPPDQKRKER 326
>sp|Q01560|NOP3_YEAST Nucleolar protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NPL3 PE=1 SV=1
Length = 414
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127
LFV F P+ +E ++ F P+G + V+I FAFV+FE E A KA+E +
Sbjct: 127 LFVRPF-PLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFAN 185
Query: 128 RVISVEYA 135
+ + V Y+
Sbjct: 186 QPLEVVYS 193
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 12/125 (9%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV FE+ AA AI + F + L V +++ R+R K++ + L
Sbjct: 159 GFAFVEFEEAESAAKAIEEVHGKSFA--NQPLEVVYSKLPAKRYRITMKNLPEGCSWQDL 216
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
+ RE ++ F + ++ R ++F ++E +ALE + +
Sbjct: 217 KDL------ARENSLETTF----SSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGS 266
Query: 129 VISVE 133
VI+VE
Sbjct: 267 VITVE 271
>sp|P0CR16|MRD1_CRYNJ Multiple RNA-binding domain-containing protein 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=MRD1 PE=3 SV=1
Length = 769
Score = 48.5 bits (114), Expect = 4e-05, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 21/144 (14%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA-RG---ERGRHRDGSKSMANQRP 64
G+ FV F+ A A++ L+ F D + L V++A RG +R + G +
Sbjct: 582 GYGFVGFKTKEAATKALKALEG--FEIDGKSLEVKFAQRGAEDDRETKKGGDAEGGKTKS 639
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------------RRNFAFVQFETQE 111
TK L V N P ++D++ F YG + +R+ R FAF++F T
Sbjct: 640 TKVL-VKNL-PFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEFTTHT 697
Query: 112 EATKALESTDRSKLVDRVISVEYA 135
EA +A+E+ + L+ R + +++A
Sbjct: 698 EAARAMEALKHTHLLGRHLVLQWA 721
>sp|P0CR17|MRD1_CRYNB Multiple RNA-binding domain-containing protein 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=MRD1 PE=3 SV=1
Length = 769
Score = 48.5 bits (114), Expect = 4e-05, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 21/144 (14%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA-RG---ERGRHRDGSKSMANQRP 64
G+ FV F+ A A++ L+ F D + L V++A RG +R + G +
Sbjct: 582 GYGFVGFKTKEAATKALKALEG--FEIDGKSLEVKFAQRGAEDDRETKKGGDAEGGKTKS 639
Query: 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------------RRNFAFVQFETQE 111
TK L V N P ++D++ F YG + +R+ R FAF++F T
Sbjct: 640 TKVL-VKNL-PFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEFTTHT 697
Query: 112 EATKALESTDRSKLVDRVISVEYA 135
EA +A+E+ + L+ R + +++A
Sbjct: 698 EAARAMEALKHTHLLGRHLVLQWA 721
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 21/147 (14%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRR-LSVEWARGERGRHRDGSKSMANQRPTKT 67
G+A++ F+ ADA R LD + F + R + + W++ + G + G
Sbjct: 53 GYAYINFQQP---ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSG---------VGN 100
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI------RRNFAFVQFETQEEATKALESTD 121
+F+ N D + + F +G++L ++ R + FV FETQE A +A+++ +
Sbjct: 101 VFIKNLDD-SIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMN 159
Query: 122 RSKLVDRVISVEYALKDDSERDDRYDS 148
L DR + V + K ER+ Y +
Sbjct: 160 GMLLNDRKVFVGH-FKSRRERELEYGA 185
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 15/137 (10%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRD-GSKSMANQRPTKT 67
G+ FV+FE A AI+ ++ + + R++ V + R R + G+K M
Sbjct: 139 GYGFVHFETQEAANRAIQTMNGMLL--NDRKVFVGHFKSRRERELEYGAKVME----FTN 192
Query: 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALEST 120
+++ NF +R +K F +GN L V++ R F FV + EEA KA+
Sbjct: 193 VYIKNFGEDMDDKR-LKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEM 251
Query: 121 DRSKLVDRVISVEYALK 137
+ ++ R++ V A K
Sbjct: 252 NGKEVNGRMVYVGRAQK 268
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 35/229 (15%)
Query: 9 GFAFVYFEDDRDAADAIRGLDN-------IPFGYDRRRLSVEWARGERGRHRDGSKSM-A 60
GF FV + + +A A+ ++ + G ++R+ +GE R + K
Sbjct: 232 GFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIE---RQGELKRKFEQIKQERI 288
Query: 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEAT 114
N+ L+V N D +R +++ F PYG + ++ + F FV F + EEAT
Sbjct: 289 NRYQGVNLYVKNLDDGIDDDR-LRKEFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEAT 347
Query: 115 KALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSP 174
KA+ +++ R++S + ++R + + Y + R P P
Sbjct: 348 KAV-----TEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQR-------LATMRAMPGP 395
Query: 175 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 223
G + PA Y P Q P + SP PV R +P + ++S
Sbjct: 396 LLGSFQQPA--NYFLPTMPQ---PSNRAFYSPNPVAPVRPAPQWASHQS 439
>sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus
GN=Syncrip PE=1 SV=2
Length = 623
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + +VEWA + MA K L
Sbjct: 287 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADP---IEDPDPEVMAK---VKVL 340
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AF+ F+ ++ A KA+E + L
Sbjct: 341 FVRNLANTVTEEI-LEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGE 399
Query: 129 VISVEYALKDDSERDDR 145
I + +A D +R +R
Sbjct: 400 NIEIVFAKPPDQKRKER 416
>sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens
GN=SYNCRIP PE=1 SV=2
Length = 623
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 7/137 (5%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GF F+ +ED + AA A R L + +VEWA + MA K L
Sbjct: 287 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADP---IEDPDPEVMAK---VKVL 340
Query: 69 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 128
FV N T E +++ F +G + V+ +++AF+ F+ ++ A KA+E + L
Sbjct: 341 FVRNLANTVTEEI-LEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGE 399
Query: 129 VISVEYALKDDSERDDR 145
I + +A D +R +R
Sbjct: 400 NIEIVFAKPPDQKRKER 416
>sp|Q10422|YDC1_SCHPO Uncharacterized RNA-binding protein C25G10.01
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC25G10.01 PE=1 SV=1
Length = 297
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 14/90 (15%)
Query: 54 DGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--------FAFV 105
+GS+++ N LFV R +E ++++ F +G V HVRI R F F+
Sbjct: 94 EGSENLGND-----LFVSGI-ASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFL 147
Query: 106 QFETQEEATKALESTDRSKLVDRVISVEYA 135
F T EEAT A+++ + + RV++V+ A
Sbjct: 148 SFSTVEEATSAIDNLNSQEFYGRVLNVQKA 177
>sp|Q5R9H4|A1CF_PONAB APOBEC1 complementation factor OS=Pongo abelii GN=A1CF PE=2 SV=1
Length = 587
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 69/152 (45%), Gaps = 12/152 (7%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L ++V+WA E D S+ K L
Sbjct: 180 GFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV------KIL 233
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N + T E I++ F G V V+ R++AFV F +E+A +A+++ + L
Sbjct: 234 YVRNLM-LSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLD 292
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGGYGRHS 158
I V A D + RY RG GR +
Sbjct: 293 GSPIEVTLAKPVDKDSYVRYT---RGTGGRGT 321
>sp|Q9NQ94|A1CF_HUMAN APOBEC1 complementation factor OS=Homo sapiens GN=A1CF PE=1 SV=1
Length = 594
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 69/152 (45%), Gaps = 12/152 (7%)
Query: 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 68
GFAFV +E R AA A R L ++V+WA E D S+ K L
Sbjct: 180 GFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSV------KIL 233
Query: 69 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 126
+V N + T E I++ F G V V+ R++AFV F +E+A +A+++ + L
Sbjct: 234 YVRNLM-LSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLD 292
Query: 127 DRVISVEYALKDDSERDDRYDSPRRGGYGRHS 158
I V A D + RY RG GR +
Sbjct: 293 GSPIEVTLAKPVDKDSYVRYT---RGTGGRGT 321
>sp|Q10277|MSA1_SCHPO Multicopy suppressor of sporulation protein msa1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=msa1 PE=4 SV=1
Length = 533
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 8/81 (9%)
Query: 63 RPTKTLFVINFDPIRTRER---DIKRHFEPYGNVLHVRI-----RRNFAFVQFETQEEAT 114
+P LFV + + R+ E +K +F+ +G +LHV++ +R ++FVQF+ ++A+
Sbjct: 76 KPVACLFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKDWLQRPYSFVQFQNTDDAS 135
Query: 115 KALESTDRSKLVDRVISVEYA 135
KAL + L R I +E A
Sbjct: 136 KALSEAQNTILDGRHIRIERA 156
Score = 35.4 bits (80), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-----RRNFAFVQFETQEEATKALESTD 121
++FV DP+ + F YG V+ +I + FAF++F++Q+ A A+
Sbjct: 366 SIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYAAVCGKT 425
Query: 122 RSKLVDRVISVEY 134
RS + + VE+
Sbjct: 426 RSPHQKKPLRVEF 438
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,726,003
Number of Sequences: 539616
Number of extensions: 4662018
Number of successful extensions: 14123
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 699
Number of HSP's that attempted gapping in prelim test: 11515
Number of HSP's gapped (non-prelim): 2273
length of query: 240
length of database: 191,569,459
effective HSP length: 114
effective length of query: 126
effective length of database: 130,053,235
effective search space: 16386707610
effective search space used: 16386707610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)