Query 026341
Match_columns 240
No_of_seqs 375 out of 2468
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 06:47:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026341.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026341hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 99.9 4.5E-26 9.8E-31 193.1 19.0 125 3-141 144-278 (346)
2 KOG0148 Apoptosis-promoting RN 99.9 1.3E-26 2.7E-31 182.3 14.2 135 3-140 99-240 (321)
3 TIGR01648 hnRNP-R-Q heterogene 99.9 5.7E-25 1.2E-29 195.7 19.7 131 4-141 178-310 (578)
4 TIGR01645 half-pint poly-U bin 99.9 1.8E-24 4E-29 192.8 15.3 134 3-139 144-285 (612)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 2.7E-23 5.8E-28 178.4 17.9 135 4-139 127-350 (352)
6 KOG0117 Heterogeneous nuclear 99.9 4.1E-24 8.9E-29 178.5 11.3 132 4-142 204-335 (506)
7 KOG0107 Alternative splicing f 99.9 2.4E-22 5.3E-27 148.9 16.3 78 64-142 9-89 (195)
8 TIGR01622 SF-CC1 splicing fact 99.9 6E-23 1.3E-27 182.1 15.7 132 3-138 126-266 (457)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.4E-22 3E-27 173.9 15.1 123 3-139 40-172 (352)
10 TIGR01642 U2AF_lg U2 snRNP aux 99.9 5.8E-22 1.3E-26 178.0 15.0 130 5-138 220-375 (509)
11 KOG4207 Predicted splicing fac 99.9 3.7E-21 8E-26 146.2 13.8 79 61-140 9-95 (256)
12 TIGR01628 PABP-1234 polyadenyl 99.9 1.8E-21 3.9E-26 176.7 13.7 133 4-139 215-365 (562)
13 KOG0109 RNA-binding protein LA 99.9 7.2E-22 1.6E-26 157.1 9.4 127 7-149 35-161 (346)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 8.3E-21 1.8E-25 169.0 16.9 131 6-139 36-175 (481)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 6.6E-21 1.4E-25 169.6 16.0 129 7-138 312-480 (481)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.9 8.6E-21 1.9E-25 170.4 15.5 131 4-137 333-501 (509)
17 TIGR01628 PABP-1234 polyadenyl 99.9 6.2E-21 1.3E-25 173.2 13.9 123 4-138 38-167 (562)
18 KOG0131 Splicing factor 3b, su 99.9 5.4E-21 1.2E-25 142.6 10.5 126 4-142 47-181 (203)
19 KOG0144 RNA-binding protein CU 99.8 3.2E-21 7E-26 160.6 9.1 129 3-142 71-210 (510)
20 KOG0145 RNA-binding protein EL 99.8 7.5E-21 1.6E-25 149.2 9.9 124 3-140 78-211 (360)
21 KOG0117 Heterogeneous nuclear 99.8 2E-20 4.4E-25 156.5 12.6 119 3-140 120-250 (506)
22 KOG0127 Nucleolar protein fibr 99.8 2E-20 4.3E-25 160.0 11.9 133 5-140 44-198 (678)
23 KOG0110 RNA-binding protein (R 99.8 4.6E-20 9.9E-25 162.1 10.4 128 7-139 559-694 (725)
24 KOG0145 RNA-binding protein EL 99.8 8.4E-19 1.8E-23 137.8 15.0 134 4-138 165-358 (360)
25 KOG0124 Polypyrimidine tract-b 99.8 2.6E-20 5.7E-25 152.5 6.4 131 4-137 151-289 (544)
26 KOG0127 Nucleolar protein fibr 99.8 5.1E-19 1.1E-23 151.4 13.2 134 3-139 153-379 (678)
27 TIGR01648 hnRNP-R-Q heterogene 99.8 3.4E-19 7.4E-24 158.9 12.6 118 3-139 94-223 (578)
28 TIGR01622 SF-CC1 splicing fact 99.8 4.2E-18 9.2E-23 151.1 16.8 131 4-137 224-447 (457)
29 PLN03134 glycine-rich RNA-bind 99.8 7.7E-18 1.7E-22 126.0 14.4 79 61-140 30-116 (144)
30 KOG0123 Polyadenylate-binding 99.8 4.6E-18 1E-22 145.2 12.1 114 7-140 36-155 (369)
31 KOG0106 Alternative splicing f 99.8 2.5E-18 5.4E-23 134.2 8.4 122 8-132 35-165 (216)
32 KOG0113 U1 small nuclear ribon 99.7 2.1E-15 4.5E-20 120.8 15.8 80 59-139 95-182 (335)
33 KOG4206 Spliceosomal protein s 99.7 6.5E-16 1.4E-20 119.7 11.9 133 1-136 45-220 (221)
34 KOG0146 RNA-binding protein ET 99.7 8.7E-17 1.9E-21 127.0 6.9 80 61-141 281-368 (371)
35 KOG0147 Transcriptional coacti 99.7 1.2E-16 2.5E-21 137.4 8.0 132 3-138 216-358 (549)
36 KOG0105 Alternative splicing f 99.6 3.3E-14 7.2E-19 106.7 16.2 125 7-134 44-186 (241)
37 KOG0105 Alternative splicing f 99.6 2.5E-15 5.4E-20 112.7 9.5 76 63-139 4-84 (241)
38 KOG0123 Polyadenylate-binding 99.6 2.1E-15 4.5E-20 129.0 10.4 124 7-137 115-245 (369)
39 TIGR01659 sex-lethal sex-letha 99.6 1.2E-14 2.6E-19 123.5 10.2 77 61-138 103-187 (346)
40 PF00076 RRM_1: RNA recognitio 99.6 1E-14 2.2E-19 95.5 7.5 63 68-131 1-70 (70)
41 KOG0130 RNA-binding protein RB 99.6 1.3E-14 2.9E-19 103.4 8.1 81 59-140 66-154 (170)
42 KOG0144 RNA-binding protein CU 99.6 1.9E-14 4.1E-19 120.5 9.6 77 61-138 420-504 (510)
43 KOG0121 Nuclear cap-binding pr 99.5 1.6E-14 3.4E-19 102.2 7.0 77 62-139 33-117 (153)
44 KOG0125 Ataxin 2-binding prote 99.5 1.6E-14 3.4E-19 117.2 7.7 73 64-137 95-173 (376)
45 KOG1456 Heterogeneous nuclear 99.5 2.4E-13 5.2E-18 112.2 13.5 130 10-139 161-364 (494)
46 PLN03120 nucleic acid binding 99.5 6.9E-14 1.5E-18 112.2 9.6 72 65-138 4-80 (260)
47 KOG0147 Transcriptional coacti 99.5 1E-13 2.2E-18 119.5 10.5 133 4-138 316-528 (549)
48 KOG0122 Translation initiation 99.5 1.5E-13 3.2E-18 107.5 8.6 74 64-138 188-269 (270)
49 KOG4205 RNA-binding protein mu 99.5 1E-13 2.2E-18 115.0 7.4 130 4-143 44-181 (311)
50 KOG0114 Predicted RNA-binding 99.5 4E-13 8.6E-18 91.6 8.5 76 62-138 15-95 (124)
51 PF14259 RRM_6: RNA recognitio 99.4 4E-13 8.7E-18 88.1 7.7 63 68-131 1-70 (70)
52 KOG0109 RNA-binding protein LA 99.4 1.3E-13 2.8E-18 110.4 5.3 73 66-139 3-75 (346)
53 KOG1457 RNA binding protein (c 99.4 7.4E-13 1.6E-17 102.3 9.2 117 8-125 77-273 (284)
54 PLN03213 repressor of silencin 99.4 5.4E-13 1.2E-17 113.7 9.2 74 63-137 8-87 (759)
55 KOG0120 Splicing factor U2AF, 99.4 7.1E-13 1.5E-17 115.4 10.0 131 4-136 327-490 (500)
56 PLN03121 nucleic acid binding 99.4 1.7E-12 3.7E-17 102.7 9.6 72 64-137 4-80 (243)
57 PF13893 RRM_5: RNA recognitio 99.4 2.2E-12 4.7E-17 80.8 7.9 53 83-135 1-56 (56)
58 KOG0110 RNA-binding protein (R 99.4 1.3E-12 2.8E-17 115.7 9.2 124 10-136 423-596 (725)
59 smart00362 RRM_2 RNA recogniti 99.4 2.7E-12 5.9E-17 83.6 8.1 66 67-133 1-72 (72)
60 TIGR01645 half-pint poly-U bin 99.4 2E-12 4.4E-17 116.1 8.7 74 62-136 104-185 (612)
61 KOG0111 Cyclophilin-type pepti 99.4 8.8E-13 1.9E-17 101.7 5.2 79 63-142 8-94 (298)
62 KOG4211 Splicing factor hnRNP- 99.3 1.2E-11 2.5E-16 105.7 11.7 130 2-136 43-180 (510)
63 KOG0149 Predicted RNA-binding 99.3 1.9E-12 4E-17 101.0 6.2 72 64-137 11-90 (247)
64 KOG0131 Splicing factor 3b, su 99.3 2.2E-12 4.7E-17 96.8 6.0 73 63-136 7-87 (203)
65 KOG0148 Apoptosis-promoting RN 99.3 4.9E-12 1.1E-16 100.4 7.2 94 39-139 42-143 (321)
66 KOG1548 Transcription elongati 99.3 3.4E-11 7.3E-16 98.7 12.2 133 3-137 178-351 (382)
67 KOG0126 Predicted RNA-binding 99.3 5E-13 1.1E-17 100.2 1.0 73 64-137 34-114 (219)
68 cd00590 RRM RRM (RNA recogniti 99.3 1.9E-11 4.1E-16 80.0 8.5 67 67-134 1-74 (74)
69 KOG4212 RNA-binding protein hn 99.3 6E-11 1.3E-15 100.0 12.9 133 3-138 81-294 (608)
70 KOG1190 Polypyrimidine tract-b 99.3 3.7E-11 8E-16 100.4 11.2 131 10-140 190-375 (492)
71 smart00360 RRM RNA recognition 99.3 1.4E-11 3.1E-16 79.8 7.1 63 70-133 1-71 (71)
72 KOG1190 Polypyrimidine tract-b 99.3 7.8E-11 1.7E-15 98.5 12.2 127 8-137 335-490 (492)
73 COG0724 RNA-binding proteins ( 99.3 4.3E-11 9.3E-16 98.3 10.4 72 65-137 115-194 (306)
74 KOG4212 RNA-binding protein hn 99.3 1E-10 2.2E-15 98.6 12.3 72 63-135 534-608 (608)
75 KOG4207 Predicted splicing fac 99.2 1.5E-10 3.2E-15 88.7 11.0 42 3-46 50-91 (256)
76 KOG1456 Heterogeneous nuclear 99.2 9.3E-11 2E-15 97.1 9.4 130 7-140 66-201 (494)
77 KOG0107 Alternative splicing f 99.2 7E-10 1.5E-14 83.0 12.4 43 6-50 45-87 (195)
78 KOG4206 Spliceosomal protein s 99.2 8.8E-11 1.9E-15 91.4 7.7 78 61-139 5-91 (221)
79 KOG0108 mRNA cleavage and poly 99.1 1.1E-10 2.4E-15 101.1 7.8 74 66-140 19-100 (435)
80 smart00361 RRM_1 RNA recogniti 99.1 2.6E-10 5.7E-15 74.7 6.2 53 80-132 2-69 (70)
81 KOG0120 Splicing factor U2AF, 99.1 1.6E-10 3.5E-15 100.8 6.5 130 7-140 222-371 (500)
82 KOG0132 RNA polymerase II C-te 99.1 2.9E-10 6.2E-15 101.9 7.5 76 63-139 419-496 (894)
83 KOG0415 Predicted peptidyl pro 99.1 1.9E-10 4E-15 94.7 5.7 77 60-137 234-318 (479)
84 KOG0106 Alternative splicing f 99.1 2E-10 4.4E-15 90.0 5.1 74 66-140 2-75 (216)
85 KOG0153 Predicted RNA-binding 99.0 7.9E-10 1.7E-14 90.9 7.5 76 61-137 224-302 (377)
86 KOG0124 Polypyrimidine tract-b 99.0 3.7E-10 8E-15 93.4 4.3 70 64-134 112-189 (544)
87 KOG4676 Splicing factor, argin 99.0 9.2E-11 2E-15 97.6 0.6 72 66-139 152-227 (479)
88 KOG0146 RNA-binding protein ET 99.0 9E-10 1.9E-14 87.6 5.2 92 37-140 2-103 (371)
89 PLN03134 glycine-rich RNA-bind 98.9 2.7E-09 5.8E-14 79.9 6.2 46 3-50 71-116 (144)
90 KOG4661 Hsp27-ERE-TATA-binding 98.9 4.7E-09 1E-13 91.5 8.1 78 62-140 402-487 (940)
91 KOG1457 RNA binding protein (c 98.9 1.5E-08 3.2E-13 78.8 9.0 77 64-141 33-121 (284)
92 KOG0116 RasGAP SH3 binding pro 98.8 4.1E-08 9E-13 84.8 11.6 73 64-138 287-367 (419)
93 KOG4208 Nucleolar RNA-binding 98.8 1.6E-08 3.4E-13 77.7 7.7 77 61-138 45-130 (214)
94 PF13893 RRM_5: RNA recognitio 98.8 1.1E-08 2.3E-13 63.9 5.2 36 8-45 21-56 (56)
95 smart00361 RRM_1 RNA recogniti 98.8 8.7E-09 1.9E-13 67.4 4.7 36 5-42 34-69 (70)
96 KOG4208 Nucleolar RNA-binding 98.8 7E-09 1.5E-13 79.7 4.8 45 2-48 86-130 (214)
97 COG0724 RNA-binding proteins ( 98.8 4.5E-08 9.9E-13 80.2 9.0 93 3-98 152-257 (306)
98 KOG4210 Nuclear localization s 98.7 4.6E-08 1E-12 81.1 8.1 131 3-139 125-265 (285)
99 KOG0533 RRM motif-containing p 98.7 8.4E-08 1.8E-12 77.0 8.3 75 65-140 83-164 (243)
100 KOG4454 RNA binding protein (R 98.7 8.9E-09 1.9E-13 79.7 1.8 76 61-137 5-86 (267)
101 KOG1365 RNA-binding protein Fu 98.6 3.9E-08 8.6E-13 82.0 3.6 128 4-137 202-361 (508)
102 KOG0111 Cyclophilin-type pepti 98.6 5.9E-08 1.3E-12 75.3 4.0 47 4-52 48-94 (298)
103 KOG4660 Protein Mei2, essentia 98.6 5.2E-08 1.1E-12 84.9 3.9 70 61-131 71-143 (549)
104 PF04059 RRM_2: RNA recognitio 98.5 5.3E-07 1.1E-11 62.3 7.8 72 66-138 2-87 (97)
105 KOG0226 RNA-binding proteins [ 98.5 1.8E-07 3.9E-12 74.2 6.0 122 6-135 138-267 (290)
106 PF08777 RRM_3: RNA binding mo 98.5 3E-07 6.4E-12 64.9 6.5 71 65-136 1-78 (105)
107 KOG1548 Transcription elongati 98.5 3.4E-07 7.5E-12 75.5 7.6 78 62-140 131-223 (382)
108 KOG4209 Splicing factor RNPS1, 98.5 8.6E-07 1.9E-11 71.3 9.9 76 61-138 97-180 (231)
109 PF11608 Limkain-b1: Limkain b 98.5 4.2E-07 9.1E-12 60.1 6.3 70 66-138 3-77 (90)
110 KOG0151 Predicted splicing reg 98.5 1.8E-07 3.8E-12 83.7 6.0 75 62-137 171-256 (877)
111 KOG4205 RNA-binding protein mu 98.5 1.5E-07 3.2E-12 78.6 4.5 75 64-140 5-87 (311)
112 KOG0130 RNA-binding protein RB 98.5 1.3E-07 2.9E-12 67.9 3.2 45 3-49 109-153 (170)
113 PF00076 RRM_1: RNA recognitio 98.4 3.1E-07 6.7E-12 59.5 4.2 36 4-41 35-70 (70)
114 KOG0128 RNA-binding protein SA 98.4 1.4E-07 2.9E-12 86.0 3.2 108 3-141 704-818 (881)
115 KOG0108 mRNA cleavage and poly 98.4 7E-08 1.5E-12 83.9 1.2 45 3-49 55-99 (435)
116 KOG2193 IGF-II mRNA-binding pr 98.4 1.5E-08 3.2E-13 85.4 -2.9 117 8-139 37-158 (584)
117 KOG0125 Ataxin 2-binding prote 98.4 2.5E-07 5.3E-12 75.9 3.9 44 3-48 131-174 (376)
118 KOG0129 Predicted RNA-binding 98.4 3.5E-06 7.5E-11 73.2 11.0 120 8-134 303-450 (520)
119 KOG0112 Large RNA-binding prot 98.3 3.8E-07 8.3E-12 83.5 3.8 117 8-140 413-533 (975)
120 smart00360 RRM RNA recognition 98.3 1.3E-06 2.8E-11 56.0 4.7 38 4-43 34-71 (71)
121 PF14259 RRM_6: RNA recognitio 98.2 2.5E-06 5.4E-11 55.5 4.3 35 5-41 36-70 (70)
122 KOG4211 Splicing factor hnRNP- 98.2 7.2E-06 1.6E-10 70.8 8.1 74 62-138 7-86 (510)
123 KOG0113 U1 small nuclear ribon 98.2 2.9E-06 6.3E-11 68.9 4.9 43 3-47 138-180 (335)
124 KOG0126 Predicted RNA-binding 98.1 6.6E-07 1.4E-11 67.6 0.7 46 2-49 71-116 (219)
125 smart00362 RRM_2 RNA recogniti 98.1 5.5E-06 1.2E-10 53.2 4.5 37 5-43 36-72 (72)
126 KOG0121 Nuclear cap-binding pr 98.0 5.5E-06 1.2E-10 59.2 3.8 42 6-49 76-117 (153)
127 KOG1995 Conserved Zn-finger pr 97.9 1.5E-05 3.3E-10 66.4 5.4 79 60-139 61-155 (351)
128 PLN03120 nucleic acid binding 97.9 1.5E-05 3.3E-10 64.5 5.1 40 7-49 42-81 (260)
129 KOG1365 RNA-binding protein Fu 97.9 0.00014 3.1E-09 61.2 10.6 119 7-130 101-235 (508)
130 KOG0149 Predicted RNA-binding 97.9 7.8E-06 1.7E-10 64.4 2.8 42 3-47 49-90 (247)
131 cd00590 RRM RRM (RNA recogniti 97.9 2.4E-05 5.2E-10 50.4 4.9 37 6-44 38-74 (74)
132 KOG2416 Acinus (induces apopto 97.9 1.6E-05 3.4E-10 70.2 4.9 78 59-137 438-521 (718)
133 PLN03213 repressor of silencin 97.9 1.7E-05 3.7E-10 68.7 4.5 37 8-46 48-86 (759)
134 PF14605 Nup35_RRM_2: Nup53/35 97.9 5.3E-05 1.2E-09 46.4 5.5 50 66-117 2-53 (53)
135 KOG1855 Predicted RNA-binding 97.9 3.9E-05 8.5E-10 65.3 6.5 62 61-123 227-309 (484)
136 COG5175 MOT2 Transcriptional r 97.8 5E-05 1.1E-09 62.8 6.6 74 63-136 112-201 (480)
137 KOG4307 RNA binding protein RB 97.8 5.5E-05 1.2E-09 68.0 6.5 125 8-136 352-512 (944)
138 KOG0114 Predicted RNA-binding 97.8 4.3E-05 9.3E-10 52.7 4.3 44 4-49 53-96 (124)
139 KOG0415 Predicted peptidyl pro 97.8 2.2E-05 4.7E-10 65.4 3.3 45 2-48 275-319 (479)
140 KOG0226 RNA-binding proteins [ 97.7 2.1E-05 4.6E-10 62.6 2.6 42 2-45 226-267 (290)
141 PF08952 DUF1866: Domain of un 97.7 0.00023 5E-09 52.6 7.7 76 61-137 23-106 (146)
142 KOG4307 RNA binding protein RB 97.7 0.00013 2.9E-09 65.7 7.4 68 66-134 868-943 (944)
143 KOG4454 RNA binding protein (R 97.7 1.6E-05 3.4E-10 62.0 1.3 100 6-129 48-154 (267)
144 KOG2202 U2 snRNP splicing fact 97.7 1.9E-05 4E-10 63.1 1.5 59 81-139 83-149 (260)
145 PLN03121 nucleic acid binding 97.6 8E-05 1.7E-09 59.5 4.8 42 4-48 40-81 (243)
146 KOG0115 RNA-binding protein p5 97.5 0.00034 7.3E-09 56.0 6.5 96 20-136 6-112 (275)
147 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.00044 9.6E-09 48.1 6.3 70 65-137 6-91 (100)
148 KOG2314 Translation initiation 97.4 0.00051 1.1E-08 60.7 6.9 71 64-136 57-142 (698)
149 KOG3152 TBP-binding protein, a 97.4 0.00012 2.6E-09 58.4 2.6 65 64-129 73-157 (278)
150 KOG4849 mRNA cleavage factor I 97.3 0.00017 3.7E-09 60.0 3.0 68 66-134 81-158 (498)
151 KOG4676 Splicing factor, argin 97.3 0.00034 7.5E-09 59.1 4.5 69 65-135 7-86 (479)
152 KOG0128 RNA-binding protein SA 97.2 1.1E-05 2.3E-10 73.9 -5.9 112 10-126 616-735 (881)
153 KOG1996 mRNA splicing factor [ 97.2 0.0011 2.3E-08 54.2 5.9 57 80-136 300-365 (378)
154 PF10309 DUF2414: Protein of u 97.1 0.0032 7E-08 39.6 6.7 54 65-120 5-62 (62)
155 PF08675 RNA_bind: RNA binding 97.1 0.0036 7.8E-08 41.6 6.8 56 65-122 9-64 (87)
156 PF11608 Limkain-b1: Limkain b 96.9 0.002 4.4E-08 42.8 4.5 42 7-50 38-79 (90)
157 PF04059 RRM_2: RNA recognitio 96.9 0.0022 4.8E-08 44.4 4.7 44 3-46 40-85 (97)
158 KOG2193 IGF-II mRNA-binding pr 96.8 0.0017 3.7E-08 55.6 4.1 74 66-140 2-78 (584)
159 KOG0129 Predicted RNA-binding 96.7 0.0061 1.3E-07 53.5 7.4 56 64-120 258-326 (520)
160 KOG2591 c-Mpl binding protein, 96.7 0.0051 1.1E-07 54.5 6.8 68 64-132 174-246 (684)
161 KOG4209 Splicing factor RNPS1, 96.6 0.0023 5E-08 51.6 4.0 42 4-48 139-180 (231)
162 KOG4660 Protein Mei2, essentia 96.6 0.0018 3.8E-08 57.2 3.1 129 4-137 108-249 (549)
163 KOG4661 Hsp27-ERE-TATA-binding 96.5 0.0026 5.6E-08 56.5 3.9 40 8-49 447-486 (940)
164 PF15023 DUF4523: Protein of u 96.4 0.031 6.8E-07 41.1 8.0 75 60-136 81-160 (166)
165 KOG0153 Predicted RNA-binding 96.3 0.0045 9.8E-08 51.7 3.6 40 7-47 263-302 (377)
166 PF03880 DbpA: DbpA RNA bindin 96.2 0.028 6.1E-07 36.8 6.6 59 76-135 11-74 (74)
167 PF04847 Calcipressin: Calcipr 95.9 0.019 4.2E-07 44.6 5.3 60 79-138 8-71 (184)
168 KOG2314 Translation initiation 95.8 0.011 2.4E-07 52.5 4.2 41 5-46 102-142 (698)
169 KOG0533 RRM motif-containing p 95.7 0.021 4.6E-07 46.2 5.0 46 2-49 118-163 (243)
170 PF03467 Smg4_UPF3: Smg-4/UPF3 95.6 0.035 7.5E-07 43.0 5.9 73 64-137 6-97 (176)
171 PF07292 NID: Nmi/IFP 35 domai 95.6 0.017 3.7E-07 39.1 3.6 74 11-88 1-74 (88)
172 KOG4285 Mitotic phosphoprotein 95.6 0.043 9.3E-07 45.2 6.4 69 67-138 199-270 (350)
173 PF11767 SET_assoc: Histone ly 95.6 0.085 1.9E-06 33.7 6.5 56 76-132 10-65 (66)
174 KOG0132 RNA polymerase II C-te 95.6 0.018 3.9E-07 53.1 4.6 45 5-51 454-498 (894)
175 KOG2135 Proteins containing th 95.5 0.0076 1.7E-07 52.4 2.0 72 65-137 372-445 (526)
176 PF07576 BRAP2: BRCA1-associat 95.5 0.52 1.1E-05 33.4 10.8 70 65-135 13-92 (110)
177 KOG2202 U2 snRNP splicing fact 95.4 0.01 2.2E-07 47.7 2.3 39 7-47 109-147 (260)
178 KOG2068 MOT2 transcription fac 95.0 0.0085 1.8E-07 50.0 0.6 72 66-138 78-163 (327)
179 KOG2253 U1 snRNP complex, subu 94.9 0.018 3.9E-07 52.1 2.4 72 61-134 36-107 (668)
180 KOG1995 Conserved Zn-finger pr 94.2 0.032 7E-07 47.0 2.3 45 3-49 111-155 (351)
181 KOG0151 Predicted splicing reg 94.2 0.044 9.5E-07 50.2 3.2 37 8-46 219-255 (877)
182 KOG0112 Large RNA-binding prot 94.1 0.0085 1.9E-07 55.9 -1.4 72 63-135 370-448 (975)
183 PRK11634 ATP-dependent RNA hel 93.9 1.6 3.4E-05 40.8 13.0 61 76-137 497-562 (629)
184 KOG2318 Uncharacterized conser 93.2 0.34 7.4E-06 43.5 7.0 75 60-135 169-305 (650)
185 KOG0116 RasGAP SH3 binding pro 93.1 0.093 2E-06 46.0 3.4 39 5-46 327-365 (419)
186 KOG4574 RNA-binding protein (c 92.7 0.076 1.6E-06 49.6 2.3 77 63-139 284-375 (1007)
187 PF03880 DbpA: DbpA RNA bindin 92.1 0.24 5.3E-06 32.3 3.6 35 8-45 40-74 (74)
188 KOG0804 Cytoplasmic Zn-finger 91.8 0.71 1.5E-05 40.4 6.9 63 64-127 73-142 (493)
189 PF08952 DUF1866: Domain of un 91.0 0.43 9.3E-06 35.5 4.3 36 9-47 71-106 (146)
190 PF11767 SET_assoc: Histone ly 90.2 0.41 8.8E-06 30.6 3.1 29 12-42 37-65 (66)
191 PF08777 RRM_3: RNA binding mo 87.4 0.74 1.6E-05 32.4 3.2 35 9-43 38-75 (105)
192 KOG4849 mRNA cleavage factor I 87.2 0.81 1.8E-05 38.7 3.8 39 3-43 119-157 (498)
193 COG5175 MOT2 Transcriptional r 86.4 0.93 2E-05 38.2 3.7 34 12-47 169-202 (480)
194 PF04847 Calcipressin: Calcipr 85.9 1.3 2.8E-05 34.5 4.1 39 9-49 32-72 (184)
195 KOG2888 Putative RNA binding p 85.4 0.53 1.2E-05 39.5 1.8 18 218-235 383-400 (453)
196 PF07576 BRAP2: BRCA1-associat 85.4 2.6 5.6E-05 29.9 5.1 28 7-34 53-80 (110)
197 KOG4210 Nuclear localization s 85.4 0.43 9.3E-06 39.9 1.3 72 64-136 87-166 (285)
198 PF05172 Nup35_RRM: Nup53/35/4 84.2 2 4.2E-05 29.9 4.0 37 8-46 54-90 (100)
199 KOG2891 Surface glycoprotein [ 83.2 0.63 1.4E-05 38.2 1.4 36 63-99 147-194 (445)
200 KOG0835 Cyclin L [General func 81.2 2.1 4.6E-05 36.1 3.7 7 78-84 213-219 (367)
201 PF14111 DUF4283: Domain of un 79.5 0.5 1.1E-05 35.2 -0.4 85 7-99 54-138 (153)
202 KOG2416 Acinus (induces apopto 79.0 3 6.4E-05 38.0 4.1 41 7-47 480-521 (718)
203 PRK10629 EnvZ/OmpR regulon mod 76.3 26 0.00056 25.5 7.8 59 78-136 50-109 (127)
204 KOG0835 Cyclin L [General func 75.9 7.1 0.00015 33.0 5.3 6 103-108 176-181 (367)
205 PF14605 Nup35_RRM_2: Nup53/35 75.8 2.8 6.1E-05 25.4 2.3 19 7-25 35-53 (53)
206 KOG4483 Uncharacterized conser 74.0 17 0.00038 31.6 7.2 56 63-119 389-446 (528)
207 KOG4019 Calcineurin-mediated s 73.7 3.7 7.9E-05 31.7 2.9 60 81-140 30-92 (193)
208 KOG4410 5-formyltetrahydrofola 73.3 17 0.00036 30.2 6.7 46 64-110 329-377 (396)
209 PF02714 DUF221: Domain of unk 73.3 4.7 0.0001 34.2 3.8 33 11-47 1-33 (325)
210 COG5638 Uncharacterized conser 63.7 47 0.001 29.2 7.7 76 59-135 140-295 (622)
211 PF08206 OB_RNB: Ribonuclease 62.2 4.2 9.2E-05 25.0 1.0 38 6-46 6-44 (58)
212 PF10309 DUF2414: Protein of u 62.0 9.9 0.00022 23.9 2.6 18 11-28 45-62 (62)
213 PF03468 XS: XS domain; Inter 60.8 8.4 0.00018 27.6 2.4 33 78-110 29-66 (116)
214 KOG0796 Spliceosome subunit [R 59.9 5.6 0.00012 33.5 1.6 6 13-18 26-31 (319)
215 KOG2068 MOT2 transcription fac 59.4 2.7 5.9E-05 35.5 -0.3 36 11-48 128-163 (327)
216 PF03439 Spt5-NGN: Early trans 59.0 14 0.0003 24.6 3.2 27 6-32 42-68 (84)
217 PF15513 DUF4651: Domain of un 58.3 18 0.00039 22.7 3.3 18 81-98 9-26 (62)
218 KOG2591 c-Mpl binding protein, 57.9 4.7 0.0001 36.4 0.9 19 12-30 216-234 (684)
219 KOG4574 RNA-binding protein (c 55.4 8 0.00017 36.8 2.0 43 6-48 332-374 (1007)
220 PF02714 DUF221: Domain of unk 54.5 17 0.00038 30.7 3.8 34 103-138 1-34 (325)
221 KOG1295 Nonsense-mediated deca 54.2 17 0.00036 31.5 3.5 61 65-126 7-78 (376)
222 KOG4246 Predicted DNA-binding 54.1 6.6 0.00014 37.3 1.2 29 211-239 334-362 (1194)
223 PF09869 DUF2096: Uncharacteri 52.0 48 0.001 25.3 5.3 46 72-120 118-163 (169)
224 PRK14548 50S ribosomal protein 51.4 52 0.0011 22.1 4.9 45 75-119 29-80 (84)
225 KOG2888 Putative RNA binding p 50.6 11 0.00023 32.0 1.8 10 81-90 172-181 (453)
226 PF09902 DUF2129: Uncharacteri 49.1 46 0.00099 21.6 4.2 39 86-125 16-54 (71)
227 KOG4019 Calcineurin-mediated s 48.5 48 0.001 25.7 4.9 41 6-47 49-89 (193)
228 TIGR03636 L23_arch archaeal ri 48.3 65 0.0014 21.2 4.9 50 69-119 17-73 (77)
229 KOG3152 TBP-binding protein, a 48.1 4.3 9.3E-05 33.1 -0.8 28 10-39 130-157 (278)
230 KOG4357 Uncharacterized conser 47.7 1.1E+02 0.0023 22.2 6.6 63 65-127 66-140 (164)
231 KOG4008 rRNA processing protei 46.7 13 0.00027 30.0 1.6 35 63-98 38-72 (261)
232 PF07530 PRE_C2HC: Associated 45.6 26 0.00055 22.4 2.6 55 81-138 2-65 (68)
233 KOG3580 Tight junction protein 44.2 2.8E+02 0.006 26.1 10.2 7 67-73 41-47 (1027)
234 PF14268 YoaP: YoaP-like 41.8 11 0.00023 22.0 0.4 36 11-46 3-38 (44)
235 PRK02886 hypothetical protein; 40.7 67 0.0014 21.7 4.1 52 65-125 7-58 (87)
236 PRK02302 hypothetical protein; 40.4 68 0.0015 21.8 4.1 52 65-125 9-60 (89)
237 KOG2318 Uncharacterized conser 40.2 45 0.00098 30.6 4.2 36 10-45 270-305 (650)
238 KOG2135 Proteins containing th 39.8 17 0.00036 32.4 1.4 38 9-49 410-447 (526)
239 PF11823 DUF3343: Protein of u 38.9 1E+02 0.0022 19.6 7.1 25 9-33 2-26 (73)
240 PF13721 SecD-TM1: SecD export 38.7 1E+02 0.0022 21.3 5.1 45 80-124 48-93 (101)
241 KOG2295 C2H2 Zn-finger protein 38.7 5.3 0.00011 36.1 -1.8 63 65-128 231-301 (648)
242 KOG1855 Predicted RNA-binding 38.0 12 0.00025 33.0 0.2 24 8-31 286-309 (484)
243 PF14111 DUF4283: Domain of un 37.7 18 0.00039 26.7 1.2 55 81-136 36-90 (153)
244 PF10567 Nab6_mRNP_bdg: RNA-re 37.6 55 0.0012 27.4 4.0 71 65-136 15-106 (309)
245 PF08734 GYD: GYD domain; Int 37.3 1.3E+02 0.0028 20.3 5.4 41 80-120 22-67 (91)
246 COG0445 GidA Flavin-dependent 37.1 1.6E+02 0.0034 27.4 7.1 92 10-108 238-343 (621)
247 PRK08559 nusG transcription an 36.5 1.1E+02 0.0024 22.9 5.3 31 93-123 36-69 (153)
248 KOG4840 Predicted hydrolases o 36.3 79 0.0017 25.7 4.5 93 27-133 13-113 (299)
249 PRK08559 nusG transcription an 35.0 37 0.00081 25.4 2.5 26 7-32 45-70 (153)
250 COG0050 TufB GTPases - transla 34.3 1.5E+02 0.0033 25.3 6.0 106 7-117 74-189 (394)
251 KOG4246 Predicted DNA-binding 34.1 50 0.0011 31.8 3.6 19 218-236 333-351 (1194)
252 PF03467 Smg4_UPF3: Smg-4/UPF3 33.1 39 0.00084 26.1 2.4 38 9-47 56-97 (176)
253 smart00596 PRE_C2HC PRE_C2HC d 32.8 57 0.0012 21.0 2.7 53 81-136 2-63 (69)
254 PF09341 Pcc1: Transcription f 31.5 64 0.0014 20.8 3.0 38 8-46 2-39 (76)
255 PF09162 Tap-RNA_bind: Tap, RN 30.7 76 0.0016 21.5 3.2 35 11-45 46-80 (88)
256 PF00403 HMA: Heavy-metal-asso 30.5 1.3E+02 0.0027 18.1 5.4 52 67-119 1-58 (62)
257 PRK09756 PTS system N-acetylga 29.9 1.6E+02 0.0034 22.3 5.2 16 11-26 82-97 (158)
258 KOG4213 RNA-binding protein La 29.5 1.1E+02 0.0023 23.8 4.1 42 78-119 118-169 (205)
259 PRK11901 hypothetical protein; 28.8 2.1E+02 0.0045 24.5 6.1 53 66-123 246-307 (327)
260 TIGR00405 L26e_arch ribosomal 28.0 60 0.0013 23.9 2.6 26 7-32 37-62 (145)
261 PF08544 GHMP_kinases_C: GHMP 27.8 1.7E+02 0.0037 18.7 5.0 39 81-120 37-79 (85)
262 PF12829 Mhr1: Transcriptional 27.1 75 0.0016 21.7 2.7 23 8-30 51-73 (91)
263 COG0018 ArgS Arginyl-tRNA synt 26.8 2E+02 0.0043 26.9 6.2 75 8-98 81-162 (577)
264 PRK15464 cold shock-like prote 26.4 48 0.001 21.3 1.6 48 90-138 6-59 (70)
265 TIGR02381 cspD cold shock doma 26.2 53 0.0012 20.8 1.8 49 90-138 3-56 (68)
266 PF11411 DNA_ligase_IV: DNA li 26.2 44 0.00096 18.5 1.2 17 76-92 19-35 (36)
267 PF13689 DUF4154: Domain of un 26.0 2.7E+02 0.0058 20.4 6.6 51 9-73 27-77 (145)
268 cd00027 BRCT Breast Cancer Sup 25.6 1.5E+02 0.0033 17.4 4.7 46 66-112 2-47 (72)
269 KOG4365 Uncharacterized conser 25.0 11 0.00024 33.2 -2.0 68 68-137 6-81 (572)
270 PF00313 CSD: 'Cold-shock' DNA 24.8 58 0.0013 20.2 1.8 20 91-110 3-22 (66)
271 PRK14998 cold shock-like prote 24.7 61 0.0013 21.0 1.9 49 90-139 3-57 (73)
272 PRK09507 cspE cold shock prote 24.5 57 0.0012 20.8 1.7 20 90-109 5-24 (69)
273 PRK09937 stationary phase/star 24.5 61 0.0013 21.0 1.9 48 91-139 4-57 (74)
274 PRK10943 cold shock-like prote 24.2 58 0.0013 20.7 1.7 49 90-138 5-58 (69)
275 PF14893 PNMA: PNMA 24.1 92 0.002 26.7 3.3 46 63-109 16-71 (331)
276 PF12091 DUF3567: Protein of u 24.0 1.7E+02 0.0036 19.7 3.8 14 5-18 5-18 (85)
277 PRK11425 PTS system N-acetylga 23.8 2.2E+02 0.0048 21.4 5.0 16 11-26 79-94 (157)
278 PRK15463 cold shock-like prote 23.8 58 0.0013 20.9 1.6 49 90-138 6-59 (70)
279 TIGR00854 pts-sorbose PTS syst 23.2 2.5E+02 0.0054 21.0 5.2 16 11-26 78-93 (151)
280 PHA03048 IMV membrane protein; 22.8 8.7 0.00019 25.8 -2.4 21 10-30 28-48 (93)
281 PF07711 RabGGT_insert: Rab ge 22.8 40 0.00086 23.3 0.7 47 10-73 14-60 (102)
282 COG5507 Uncharacterized conser 22.4 1.1E+02 0.0023 21.2 2.7 20 9-28 67-86 (117)
283 cd04458 CSP_CDS Cold-Shock Pro 22.2 67 0.0015 19.8 1.7 48 90-137 2-54 (65)
284 PRK09890 cold shock protein Cs 21.8 66 0.0014 20.6 1.6 20 90-109 6-25 (70)
285 KOG2253 U1 snRNP complex, subu 21.6 44 0.00095 31.1 0.9 34 10-45 75-108 (668)
286 KOG2187 tRNA uracil-5-methyltr 21.4 71 0.0015 29.1 2.2 39 7-47 62-100 (534)
287 COG3444 Phosphotransferase sys 21.3 3.7E+02 0.0081 20.4 6.8 20 8-27 76-95 (159)
288 KOG1635 Peptide methionine sul 21.2 4E+02 0.0086 20.7 8.3 97 20-123 36-138 (191)
289 PRK14887 KEOPS complex Pcc1-li 20.9 2.7E+02 0.0058 18.6 5.1 41 6-46 3-43 (84)
290 PF07420 DUF1509: Protein of u 20.7 79 0.0017 26.5 2.2 32 208-239 324-355 (377)
291 PRK10354 RNA chaperone/anti-te 20.5 73 0.0016 20.3 1.6 20 90-109 6-25 (70)
292 PHA02898 virion envelope prote 20.4 15 0.00032 24.7 -1.6 21 10-30 28-49 (92)
293 PF08156 NOP5NT: NOP5NT (NUC12 20.4 68 0.0015 20.4 1.4 19 10-28 46-64 (67)
294 KOG0862 Synaptobrevin/VAMP-lik 20.1 64 0.0014 25.7 1.5 30 81-110 89-119 (216)
295 smart00738 NGN In Spt5p, this 20.1 87 0.0019 21.3 2.1 24 8-31 59-82 (106)
296 KOG1134 Uncharacterized conser 20.0 1.6E+02 0.0035 28.3 4.4 39 6-48 303-341 (728)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.95 E-value=4.5e-26 Score=193.13 Aligned_cols=125 Identities=27% Similarity=0.446 Sum_probs=109.8
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHH
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERD 82 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~ 82 (240)
+|++++|||||+|.++++|++||+.||+..| .+++|+|.|+.+.... ...++|||+|| |..+++++
T Consensus 144 ~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l--~gr~i~V~~a~p~~~~-----------~~~~~lfV~nL-p~~vtee~ 209 (346)
T TIGR01659 144 KTGYSFGYAFVDFGSEADSQRAIKNLNGITV--RNKRLKVSYARPGGES-----------IKDTNLYVTNL-PRTITDDQ 209 (346)
T ss_pred CCCccCcEEEEEEccHHHHHHHHHHcCCCcc--CCceeeeecccccccc-----------cccceeEEeCC-CCcccHHH
Confidence 4778899999999999999999999999999 6999999998754321 23568999999 89999999
Q ss_pred HHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccC--cEEEEEEeecCCCC
Q 026341 83 IKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVD--RVISVEYALKDDSE 141 (240)
Q Consensus 83 l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~~~ 141 (240)
|+++|++||+|..|.|. ++||||+|++.++|++||+.||+..|.+ ++|.|.++......
T Consensus 210 L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 210 LDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred HHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccccc
Confidence 99999999999999884 4799999999999999999999998876 78999998865443
No 2
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.3e-26 Score=182.35 Aligned_cols=135 Identities=22% Similarity=0.437 Sum_probs=118.8
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCC-----CCCCCCCCCEEEEeccCCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSK-----SMANQRPTKTLFVINFDPIR 77 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~-----~~~~~~~~~~l~v~nl~~~~ 77 (240)
.|+++||||||.|.+.++|+.||..|||..| +++.|..+||..+......+.. -.+..+.+++|||+|+ +..
T Consensus 99 ~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl--G~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I-~~~ 175 (321)
T KOG0148|consen 99 NTGKSKGYGFVSFPNKEDAENAIQQMNGQWL--GRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNI-ASG 175 (321)
T ss_pred cCCcccceeEEeccchHHHHHHHHHhCCeee--ccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCc-Ccc
Confidence 4889999999999999999999999999999 7999999999977632222211 1346677899999999 668
Q ss_pred CCHHHHHHhhccCCCeEEEEEe--CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCCC
Q 026341 78 TRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 140 (240)
Q Consensus 78 ~~~~~l~~~f~~~G~i~~~~~~--kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 140 (240)
+++++|++.|..||.|..|.+. +||+||.|++.|.|..||..||+++|.|+.|+|.|.+....
T Consensus 176 lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 176 LTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred ccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCC
Confidence 9999999999999999999995 79999999999999999999999999999999999886554
No 3
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.93 E-value=5.7e-25 Score=195.66 Aligned_cols=131 Identities=32% Similarity=0.425 Sum_probs=113.1
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHH
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDI 83 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l 83 (240)
+++++|||||+|.++++|+.|+..|+...+.+.|+.|.|+|+.++..... .......+|||+|| ++.+++++|
T Consensus 178 kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~------~~~~~~k~LfVgNL-~~~~tee~L 250 (578)
T TIGR01648 178 KKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDE------DVMAKVKILYVRNL-MTTTTEEII 250 (578)
T ss_pred cCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccc------cccccccEEEEeCC-CCCCCHHHH
Confidence 35679999999999999999999887543323699999999987654321 12334678999999 899999999
Q ss_pred HHhhccC--CCeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCCCC
Q 026341 84 KRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSE 141 (240)
Q Consensus 84 ~~~f~~~--G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 141 (240)
+++|++| |+|..|.+.++||||+|++.++|++||+.||+.+|+|+.|.|.|+++....
T Consensus 251 ~~~F~~f~~G~I~rV~~~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 251 EKSFSEFKPGKVERVKKIRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HHHHHhcCCCceEEEEeecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCcc
Confidence 9999999 999999999999999999999999999999999999999999999886554
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.92 E-value=1.8e-24 Score=192.80 Aligned_cols=134 Identities=17% Similarity=0.287 Sum_probs=112.1
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHH
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERD 82 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~ 82 (240)
.|++++|||||+|.++++|+.||+.|||..| +|+.|.|.++.....................+|||+|| +..+++++
T Consensus 144 ~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i--~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnL-p~~vteed 220 (612)
T TIGR01645 144 ATGKHKGFAFVEYEVPEAAQLALEQMNGQML--GGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASV-HPDLSETD 220 (612)
T ss_pred CCCCcCCeEEEEeCcHHHHHHHHHhcCCeEE--ecceeeecccccccccccccccccccccccceEEeecC-CCCCCHHH
Confidence 4788999999999999999999999999999 69999999765432211110111112334679999999 88999999
Q ss_pred HHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCC
Q 026341 83 IKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 139 (240)
Q Consensus 83 l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 139 (240)
|+++|+.||.|..|.|. +|||||+|.+.++|.+||..||+..|+|+.|.|.++....
T Consensus 221 Lk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 221 IKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred HHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 99999999999999883 6899999999999999999999999999999999988643
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.91 E-value=2.7e-23 Score=178.39 Aligned_cols=135 Identities=23% Similarity=0.359 Sum_probs=109.3
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCC--------------CC-------------
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRD--------------GS------------- 56 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~--------------~~------------- 56 (240)
++.++|||||+|.+.++|+.|++.|||..+...+.+|.|.|+......... ..
T Consensus 127 ~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (352)
T TIGR01661 127 TGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIG 206 (352)
T ss_pred CCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCC
Confidence 456799999999999999999999999988533478999998644311000 00
Q ss_pred -----------------------------------C-------------------CCCCCCCCCEEEEeccCCCCCCHHH
Q 026341 57 -----------------------------------K-------------------SMANQRPTKTLFVINFDPIRTRERD 82 (240)
Q Consensus 57 -----------------------------------~-------------------~~~~~~~~~~l~v~nl~~~~~~~~~ 82 (240)
. .+.....+.+|||+|| |..+++++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL-~~~~~e~~ 285 (352)
T TIGR01661 207 PMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNL-SPDTDETV 285 (352)
T ss_pred CccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCC-CCCCCHHH
Confidence 0 0000122347999999 88999999
Q ss_pred HHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCC
Q 026341 83 IKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 139 (240)
Q Consensus 83 l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 139 (240)
|.++|++||.|..|.|. +|||||+|.+.++|..||..|||..|+|+.|.|.|+..+.
T Consensus 286 L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 286 LWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 99999999999999984 7999999999999999999999999999999999988764
No 6
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=4.1e-24 Score=178.50 Aligned_cols=132 Identities=33% Similarity=0.462 Sum_probs=117.6
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHH
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDI 83 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l 83 (240)
.++++|||||+|++...|..|..+|-.-.|.+-|..++|.||.+......+ .....+.|||.|| +..+|++.|
T Consensus 204 k~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded------~ms~VKvLYVRNL-~~~tTeE~l 276 (506)
T KOG0117|consen 204 KTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDED------TMSKVKVLYVRNL-MESTTEETL 276 (506)
T ss_pred cccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChh------hhhheeeeeeecc-chhhhHHHH
Confidence 567899999999999999999988755444447999999999987765432 4455789999999 999999999
Q ss_pred HHhhccCCCeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCCCCC
Q 026341 84 KRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSER 142 (240)
Q Consensus 84 ~~~f~~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 142 (240)
+++|++||.|..|+.++.||||.|.+.++|.+||+.|||++|+|..|.|.+|++..++.
T Consensus 277 k~~F~~~G~veRVkk~rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 277 KKLFNEFGKVERVKKPRDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred HHHHHhccceEEeecccceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhc
Confidence 99999999999999999999999999999999999999999999999999999877654
No 7
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=2.4e-22 Score=148.86 Aligned_cols=78 Identities=27% Similarity=0.443 Sum_probs=72.4
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE---eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCCC
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 140 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~---~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 140 (240)
-.+.|||+|| +..+++.||+.+|..||+|..|+| +.|||||||++..+|+.|+..|+|..|+|..|.|+++.....
T Consensus 9 ~~~kVYVGnL-~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 9 GNTKVYVGNL-GSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CCceEEeccC-CCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 3789999999 889999999999999999999999 579999999999999999999999999999999999987665
Q ss_pred CC
Q 026341 141 ER 142 (240)
Q Consensus 141 ~~ 142 (240)
..
T Consensus 88 ~~ 89 (195)
T KOG0107|consen 88 GS 89 (195)
T ss_pred cc
Confidence 33
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.90 E-value=6e-23 Score=182.06 Aligned_cols=132 Identities=28% Similarity=0.441 Sum_probs=110.7
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCC-CCCCCCCCCCCCEEEEeccCCCCCCHH
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRD-GSKSMANQRPTKTLFVINFDPIRTRER 81 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~-~~~~~~~~~~~~~l~v~nl~~~~~~~~ 81 (240)
.+++++|||||+|.+.++|++||. |+|..| .|++|.|.++......... ........+...+|||+|| |..++++
T Consensus 126 ~~~~skg~afVeF~~~e~A~~Al~-l~g~~~--~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl-~~~~te~ 201 (457)
T TIGR01622 126 NSRRSKGVAYVEFYDVESVIKALA-LTGQML--LGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNL-HFNITEQ 201 (457)
T ss_pred CCCCcceEEEEEECCHHHHHHHHH-hCCCEE--CCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCC-CCCCCHH
Confidence 467889999999999999999997 999999 5999999987654332211 1111112234789999999 8899999
Q ss_pred HHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecC
Q 026341 82 DIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138 (240)
Q Consensus 82 ~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 138 (240)
+|+++|.+||.|..|.|. +|||||+|.+.++|+.|+..|||..|.|++|.|.|+...
T Consensus 202 ~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 202 ELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCC
Confidence 999999999999999884 589999999999999999999999999999999998743
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.89 E-value=1.4e-22 Score=173.94 Aligned_cols=123 Identities=21% Similarity=0.497 Sum_probs=108.4
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHH
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERD 82 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~ 82 (240)
.+++++|||||+|.++++|++||+.|||..| .|+.|.|+|+.+... .....+|||+|| |..+++++
T Consensus 40 ~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l--~g~~i~v~~a~~~~~-----------~~~~~~l~v~~l-~~~~~~~~ 105 (352)
T TIGR01661 40 VTGQSLGYGFVNYVRPEDAEKAVNSLNGLRL--QNKTIKVSYARPSSD-----------SIKGANLYVSGL-PKTMTQHE 105 (352)
T ss_pred CCCccceEEEEEECcHHHHHHHHhhcccEEE--CCeeEEEEeeccccc-----------ccccceEEECCc-cccCCHHH
Confidence 3678899999999999999999999999999 699999999976442 123568999999 89999999
Q ss_pred HHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccC--cEEEEEEeecCC
Q 026341 83 IKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVD--RVISVEYALKDD 139 (240)
Q Consensus 83 l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~ 139 (240)
|+++|.+||.|..+.+. +|||||+|++.++|+.||+.|||..+.| .+|.|.++....
T Consensus 106 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 106 LESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred HHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCC
Confidence 99999999999988873 6899999999999999999999999887 678888886554
No 10
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.88 E-value=5.8e-22 Score=177.99 Aligned_cols=130 Identities=18% Similarity=0.295 Sum_probs=105.9
Q ss_pred CCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCC------C-C---C--------CCCCCCCCCC
Q 026341 5 LHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHR------D-G---S--------KSMANQRPTK 66 (240)
Q Consensus 5 ~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~------~-~---~--------~~~~~~~~~~ 66 (240)
.+.+|||||+|.+.++|+.||+ |||+.| .|.+|.|.........+. . . . ..........
T Consensus 220 ~~~kg~afVeF~~~e~A~~Al~-l~g~~~--~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (509)
T TIGR01642 220 NKEKNFAFLEFRTVEEATFAMA-LDSIIY--SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKD 296 (509)
T ss_pred CCCCCEEEEEeCCHHHHhhhhc-CCCeEe--eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCC
Confidence 3568999999999999999995 999998 599999976543221110 0 0 0 0011234467
Q ss_pred EEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecC
Q 026341 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138 (240)
Q Consensus 67 ~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 138 (240)
+|||+|| |..+++++|+++|+.||.|..+.|. +|||||+|.+.++|+.||..|||..|.|+.|.|.++...
T Consensus 297 ~l~v~nl-p~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 297 RIYIGNL-PLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 9999999 9999999999999999999998873 689999999999999999999999999999999998754
No 11
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.87 E-value=3.7e-21 Score=146.17 Aligned_cols=79 Identities=35% Similarity=0.497 Sum_probs=72.2
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
.......|.|.|| .+.++.++|..+|++||.|..|.|+ +|||||.|....+|++|+++|+|.+|+|+.|.|
T Consensus 9 dv~gm~SLkVdNL-TyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 9 DVEGMTSLKVDNL-TYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CcccceeEEecce-eccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 4445688999999 9999999999999999999999995 699999999999999999999999999999999
Q ss_pred EEeecCCC
Q 026341 133 EYALKDDS 140 (240)
Q Consensus 133 ~~a~~~~~ 140 (240)
++|+-...
T Consensus 88 q~arygr~ 95 (256)
T KOG4207|consen 88 QMARYGRP 95 (256)
T ss_pred hhhhcCCC
Confidence 99985443
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.87 E-value=1.8e-21 Score=176.70 Aligned_cols=133 Identities=25% Similarity=0.385 Sum_probs=112.5
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCC----CceEEEEeccCCCCCCCC-------CCCCCCCCCCCCEEEEec
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYD----RRRLSVEWARGERGRHRD-------GSKSMANQRPTKTLFVIN 72 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~----g~~l~v~~a~~~~~~~~~-------~~~~~~~~~~~~~l~v~n 72 (240)
+++++|||||+|.+.++|.+|++.|||..| . |..|.|.++..+.+.... ............+|||+|
T Consensus 215 ~g~~~G~afV~F~~~e~A~~Av~~l~g~~i--~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~n 292 (562)
T TIGR01628 215 SGRSRGFAFVNFEKHEDAAKAVEEMNGKKI--GLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKN 292 (562)
T ss_pred CCCcccEEEEEECCHHHHHHHHHHhCCcEe--cccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeC
Confidence 567799999999999999999999999998 6 899999988755433110 000111234577899999
Q ss_pred cCCCCCCHHHHHHhhccCCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCC
Q 026341 73 FDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 139 (240)
Q Consensus 73 l~~~~~~~~~l~~~f~~~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 139 (240)
| +..+++++|+++|++||.|..|.+. +|||||+|.+.++|++|+..|||..|.|++|.|.+|..+.
T Consensus 293 l-~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 293 L-DDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred C-CCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 9 8899999999999999999999884 6899999999999999999999999999999999998654
No 13
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.87 E-value=7.2e-22 Score=157.09 Aligned_cols=127 Identities=24% Similarity=0.428 Sum_probs=114.9
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHHHHh
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRH 86 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~ 86 (240)
-|.||||..+++..|+.||..|+|..| +|..|.|+-++.+.+ +.++|+|+|| ...++.++|+..
T Consensus 35 vKNYgFVHiEdktaaedairNLhgYtL--hg~nInVeaSksKsk-------------~stkl~vgNi-s~tctn~ElRa~ 98 (346)
T KOG0109|consen 35 VKNYGFVHIEDKTAAEDAIRNLHGYTL--HGVNINVEASKSKSK-------------ASTKLHVGNI-SPTCTNQELRAK 98 (346)
T ss_pred ecccceEEeecccccHHHHhhccccee--cceEEEEEeccccCC-------------CccccccCCC-CccccCHHHhhh
Confidence 389999999999999999999999999 799999999887532 4789999999 778999999999
Q ss_pred hccCCCeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCCCCCCCCCCCC
Q 026341 87 FEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSP 149 (240)
Q Consensus 87 f~~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~ 149 (240)
|++||+|..|+|.++|+||.|+-.++|..|+..||+.+|+|+.++|+++...-....+..+..
T Consensus 99 fe~ygpviecdivkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlrtapgmgDq~ 161 (346)
T KOG0109|consen 99 FEKYGPVIECDIVKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQS 161 (346)
T ss_pred hcccCCceeeeeecceeEEEEeeccchHHHHhcccccccccceeeeeeeccccccCCCCCCHH
Confidence 999999999999999999999999999999999999999999999999987766555444433
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.86 E-value=8.3e-21 Score=168.95 Aligned_cols=131 Identities=20% Similarity=0.214 Sum_probs=105.0
Q ss_pred CccceEEEEeCChhHHHHHHHhh--CCCcccCCCceEEEEeccCCCCCCCCCCC-CCCCCCCCCEEEEeccCCCCCCHHH
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGL--DNIPFGYDRRRLSVEWARGERGRHRDGSK-SMANQRPTKTLFVINFDPIRTRERD 82 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l--~g~~~~~~g~~l~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~v~nl~~~~~~~~~ 82 (240)
+.+|||||+|+++++|++||+.| ++..| +|++|.|+|+............ .........+|+|.|| ++.+++++
T Consensus 36 ~~k~~afVef~~~e~A~~Ai~~~~~~~~~l--~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl-~~~vt~~~ 112 (481)
T TIGR01649 36 PGKRQALVEFEDEESAKACVNFATSVPIYI--RGQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENP-MYPITLDV 112 (481)
T ss_pred CCCCEEEEEeCchHHHHHHHHHhhcCCceE--cCeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCC-CCCCCHHH
Confidence 46899999999999999999875 66777 7999999999754322111000 1111223457999999 88999999
Q ss_pred HHHhhccCCCeEEEEEe----CCeEEEEecCHHHHHHHHHhcCCCcccC--cEEEEEEeecCC
Q 026341 83 IKRHFEPYGNVLHVRIR----RNFAFVQFETQEEATKALESTDRSKLVD--RVISVEYALKDD 139 (240)
Q Consensus 83 l~~~f~~~G~i~~~~~~----kg~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~ 139 (240)
|+++|+.||.|..|.|. .++|||+|.+.++|.+|++.|||..|.| +.|.|+|++...
T Consensus 113 L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 113 LYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred HHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCC
Confidence 99999999999999884 2589999999999999999999999965 589999998643
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.86 E-value=6.6e-21 Score=169.58 Aligned_cols=129 Identities=22% Similarity=0.319 Sum_probs=106.0
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCC------CCC---C-----------------CCC
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHR------DGS---K-----------------SMA 60 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~------~~~---~-----------------~~~ 60 (240)
.+|||||+|.+.++|+.||..|||..| .|++|.|.+++....... .+. . ...
T Consensus 312 ~~g~afV~f~~~~~A~~Ai~~lng~~l--~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~ 389 (481)
T TIGR01649 312 KKETALIEMADPYQAQLALTHLNGVKL--FGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNN 389 (481)
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEE--CCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccc
Confidence 379999999999999999999999999 699999999875421110 000 0 001
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCC--eEEEEEe------CCeEEEEecCHHHHHHHHHhcCCCcccCcE---
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGN--VLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDRV--- 129 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~--i~~~~~~------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~--- 129 (240)
..+++.+|||+|| |..+++++|+++|+.||. |..+.+. +++|||+|++.++|.+||..||+..|.+..
T Consensus 390 ~~~ps~~L~v~NL-p~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~ 468 (481)
T TIGR01649 390 IQPPSATLHLSNI-PLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSA 468 (481)
T ss_pred cCCCCcEEEEecC-CCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCc
Confidence 2356789999999 889999999999999997 7888773 589999999999999999999999999874
Q ss_pred ---EEEEEeecC
Q 026341 130 ---ISVEYALKD 138 (240)
Q Consensus 130 ---l~v~~a~~~ 138 (240)
|+|.|+++.
T Consensus 469 ~~~lkv~fs~~~ 480 (481)
T TIGR01649 469 PYHLKVSFSTSR 480 (481)
T ss_pred cceEEEEeccCC
Confidence 999988753
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.86 E-value=8.6e-21 Score=170.44 Aligned_cols=131 Identities=22% Similarity=0.308 Sum_probs=105.4
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCC-----------------CCCCCCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSK-----------------SMANQRPTK 66 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~-----------------~~~~~~~~~ 66 (240)
++.++|||||+|.+.++|+.||+.|||+.| +|+.|.|+++............ ......++.
T Consensus 333 ~g~~~g~afv~f~~~~~a~~A~~~l~g~~~--~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 410 (509)
T TIGR01642 333 TGLSKGYAFCEYKDPSVTDVAIAALNGKDT--GDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTK 410 (509)
T ss_pred CCCcCeEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCCce
Confidence 678899999999999999999999999999 6999999998744322110000 011234678
Q ss_pred EEEEeccCCCC--C--------CHHHHHHhhccCCCeEEEEEe-----------CCeEEEEecCHHHHHHHHHhcCCCcc
Q 026341 67 TLFVINFDPIR--T--------RERDIKRHFEPYGNVLHVRIR-----------RNFAFVQFETQEEATKALESTDRSKL 125 (240)
Q Consensus 67 ~l~v~nl~~~~--~--------~~~~l~~~f~~~G~i~~~~~~-----------kg~afV~f~~~~~a~~A~~~l~g~~~ 125 (240)
+|+|.|| ... + ..++|+++|.+||.|+.|.|+ .|+|||+|++.++|++||..|||..|
T Consensus 411 v~~l~N~-~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~ 489 (509)
T TIGR01642 411 VVQLTNL-VTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKF 489 (509)
T ss_pred EEEeccC-CchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEE
Confidence 8999998 421 1 126789999999999999985 37899999999999999999999999
Q ss_pred cCcEEEEEEeec
Q 026341 126 VDRVISVEYALK 137 (240)
Q Consensus 126 ~g~~l~v~~a~~ 137 (240)
+|+.|.|.|...
T Consensus 490 ~gr~v~~~~~~~ 501 (509)
T TIGR01642 490 NDRVVVAAFYGE 501 (509)
T ss_pred CCeEEEEEEeCH
Confidence 999999999754
No 17
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.85 E-value=6.2e-21 Score=173.23 Aligned_cols=123 Identities=21% Similarity=0.453 Sum_probs=107.5
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHH
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDI 83 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l 83 (240)
|++++|||||+|.++++|++|++.||+..| .|++|.|.|+....... .....+|||+|| +..+++++|
T Consensus 38 t~~s~G~afV~F~~~~~A~~Al~~ln~~~i--~gk~i~i~~s~~~~~~~---------~~~~~~vfV~nL-p~~~~~~~L 105 (562)
T TIGR01628 38 TRRSLGYGYVNFQNPADAERALETMNFKRL--GGKPIRIMWSQRDPSLR---------RSGVGNIFVKNL-DKSVDNKAL 105 (562)
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeeEEeeccccccccc---------ccCCCceEEcCC-CccCCHHHH
Confidence 577899999999999999999999999988 59999999986433221 122457999999 899999999
Q ss_pred HHhhccCCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecC
Q 026341 84 KRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138 (240)
Q Consensus 84 ~~~f~~~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 138 (240)
+++|+.||.|..|.|. +|||||+|++.++|++|++.|||..+.|+.|.|......
T Consensus 106 ~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~ 167 (562)
T TIGR01628 106 FDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKK 167 (562)
T ss_pred HHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccc
Confidence 9999999999999883 689999999999999999999999999999999776543
No 18
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.85 E-value=5.4e-21 Score=142.60 Aligned_cols=126 Identities=26% Similarity=0.432 Sum_probs=108.1
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHH
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDI 83 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l 83 (240)
|...+|||||||.++|+|+.|++.||...|+ |++|+|..+..-.+ +...+..|||+|| ...+++..|
T Consensus 47 ~~~~qGygF~Ef~~eedadYAikiln~VkLY--grpIrv~kas~~~~----------nl~vganlfvgNL-d~~vDe~~L 113 (203)
T KOG0131|consen 47 TQKHQGYGFAEFRTEEDADYAIKILNMVKLY--GRPIRVNKASAHQK----------NLDVGANLFVGNL-DPEVDEKLL 113 (203)
T ss_pred cccccceeEEEEechhhhHHHHHHHHHHHhc--CceeEEEecccccc----------ccccccccccccc-CcchhHHHH
Confidence 4567999999999999999999999988885 99999998882211 3344689999999 558999999
Q ss_pred HHhhccCCCeEEE-EE--------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCCCCC
Q 026341 84 KRHFEPYGNVLHV-RI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSER 142 (240)
Q Consensus 84 ~~~f~~~G~i~~~-~~--------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 142 (240)
.++|+.||.+... .+ +++||||.|.+.+.+.+|+..|||+.+++++|.|.++..+..+.
T Consensus 114 ~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 114 YDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred HHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 9999999987651 22 36899999999999999999999999999999999999887655
No 19
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=3.2e-21 Score=160.65 Aligned_cols=129 Identities=25% Similarity=0.384 Sum_probs=111.5
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcc-cCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHH
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPF-GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRER 81 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~-~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~ 81 (240)
.|+.++|||||.|.+.++|.+|+..|+++.. .+...+|.|.||..+++.. .....|||+-| +..++|.
T Consensus 71 ~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~----------~~e~KLFvg~l-sK~~te~ 139 (510)
T KOG0144|consen 71 STGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERI----------VEERKLFVGML-SKQCTEN 139 (510)
T ss_pred ccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhcc----------ccchhhhhhhc-cccccHH
Confidence 4778899999999999999999999988644 3345789999999877542 34678999999 8999999
Q ss_pred HHHHhhccCCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCC-cccC--cEEEEEEeecCCCCC
Q 026341 82 DIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRS-KLVD--RVISVEYALKDDSER 142 (240)
Q Consensus 82 ~l~~~f~~~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~-~~~g--~~l~v~~a~~~~~~~ 142 (240)
+|+++|.+||.|++|.|. +|||||.|.+.+.|..||+.|||. .+.| .+|.|.||..++.+.
T Consensus 140 evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 140 EVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred HHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCch
Confidence 999999999999999983 799999999999999999999997 4555 799999998877644
No 20
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=7.5e-21 Score=149.23 Aligned_cols=124 Identities=24% Similarity=0.505 Sum_probs=110.5
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHH
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERD 82 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~ 82 (240)
-+|++.|||||.|-+++||++||..|||..| ..+.|+|.||.+.... .....|||.+| |..++..+
T Consensus 78 itGqSLGYGFVNYv~p~DAe~AintlNGLrL--Q~KTIKVSyARPSs~~-----------Ik~aNLYvSGl-PktMtqke 143 (360)
T KOG0145|consen 78 ITGQSLGYGFVNYVRPKDAEKAINTLNGLRL--QNKTIKVSYARPSSDS-----------IKDANLYVSGL-PKTMTQKE 143 (360)
T ss_pred ccccccccceeeecChHHHHHHHhhhcceee--ccceEEEEeccCChhh-----------hcccceEEecC-CccchHHH
Confidence 4788999999999999999999999999999 6999999999976532 34678999999 99999999
Q ss_pred HHHhhccCCCeEEEEE--------eCCeEEEEecCHHHHHHHHHhcCCCcccC--cEEEEEEeecCCC
Q 026341 83 IKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVD--RVISVEYALKDDS 140 (240)
Q Consensus 83 l~~~f~~~G~i~~~~~--------~kg~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~~ 140 (240)
|+++|++||.|....| .+|.+||.|+...+|++||..|||..-.| .+|.|.||..+..
T Consensus 144 lE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq 211 (360)
T KOG0145|consen 144 LEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQ 211 (360)
T ss_pred HHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCccc
Confidence 9999999998876554 58999999999999999999999998876 6899999986644
No 21
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=2e-20 Score=156.53 Aligned_cols=119 Identities=28% Similarity=0.411 Sum_probs=105.7
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHH
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERD 82 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~ 82 (240)
-+|.++|||||+|.+.++|++||+.||+.+|- .|+.|.|+.+.. ++.|||+|| |.+.++++
T Consensus 120 ~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igvc~Sva-----------------n~RLFiG~I-PK~k~kee 180 (506)
T KOG0117|consen 120 FSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGVCVSVA-----------------NCRLFIGNI-PKTKKKEE 180 (506)
T ss_pred cCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEEEEeee-----------------cceeEeccC-CccccHHH
Confidence 37889999999999999999999999999997 699999998773 789999999 99999999
Q ss_pred HHHhhccCC-CeEEEEE---------eCCeEEEEecCHHHHHHHHHhcC-C-CcccCcEEEEEEeecCCC
Q 026341 83 IKRHFEPYG-NVLHVRI---------RRNFAFVQFETQEEATKALESTD-R-SKLVDRVISVEYALKDDS 140 (240)
Q Consensus 83 l~~~f~~~G-~i~~~~~---------~kg~afV~f~~~~~a~~A~~~l~-g-~~~~g~~l~v~~a~~~~~ 140 (240)
|.+.|.+.+ .|+.|.| .+|||||+|+++..|..|-..|- + .++.|..+.|.||.+...
T Consensus 181 Ilee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e 250 (506)
T KOG0117|consen 181 ILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEE 250 (506)
T ss_pred HHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccC
Confidence 999999988 5667766 36999999999999999988773 3 467899999999998765
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=2e-20 Score=159.97 Aligned_cols=133 Identities=29% Similarity=0.512 Sum_probs=112.5
Q ss_pred CCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCC-C-C----CC---------CCCCCCCCCEEE
Q 026341 5 LHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHR-D-G----SK---------SMANQRPTKTLF 69 (240)
Q Consensus 5 ~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~-~-~----~~---------~~~~~~~~~~l~ 69 (240)
..++|||||.|.-++|++.|++.+++..| +|+.|.|.++........ . + .. ......+-..|+
T Consensus 44 ~~~RGfgfVtFam~ED~qrA~~e~~~~kf--~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLI 121 (678)
T KOG0127|consen 44 SEKRGFGFVTFAMEEDVQRALAETEQSKF--EGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLI 121 (678)
T ss_pred ccccCccceeeehHhHHHHHHHHhhcCcc--cceecccccccccccchhcccccchhhhcccccCCcchhhccCccceEE
Confidence 35699999999999999999999999999 799999999985432220 0 0 00 011123468899
Q ss_pred EeccCCCCCCHHHHHHhhccCCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCCC
Q 026341 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 140 (240)
Q Consensus 70 v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 140 (240)
|.|| |+.|...+|+.+|+.||.|..|.|+ .|||||.|.+..+|..||+.||+.+|+|++|-|.||.++..
T Consensus 122 IRNL-Pf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 122 IRNL-PFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred eecC-CcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 9999 9999999999999999999999996 48999999999999999999999999999999999987653
No 23
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.82 E-value=4.6e-20 Score=162.15 Aligned_cols=128 Identities=27% Similarity=0.529 Sum_probs=110.9
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHHHHh
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRH 86 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~ 86 (240)
+.|||||+|.++++|+.|+..|+|+.| +|..|.|.++........ + +.......++.|+|.|| |+..+..+|+++
T Consensus 559 SmGfgFVEF~~~e~A~~a~k~lqgtvl--dGH~l~lk~S~~k~~~~~-g-K~~~~kk~~tKIlVRNi-pFeAt~rEVr~L 633 (725)
T KOG0110|consen 559 SMGFGFVEFAKPESAQAALKALQGTVL--DGHKLELKISENKPASTV-G-KKKSKKKKGTKILVRNI-PFEATKREVRKL 633 (725)
T ss_pred ccceeEEEecCHHHHHHHHHHhcCcee--cCceEEEEeccCcccccc-c-cccccccccceeeeecc-chHHHHHHHHHH
Confidence 469999999999999999999999999 899999999993332221 1 22223344789999999 999999999999
Q ss_pred hccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCC
Q 026341 87 FEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 139 (240)
Q Consensus 87 f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 139 (240)
|..||.|..|.|+ +|||||+|-++.+|..|+.+|..+.+.|+.|.++||....
T Consensus 634 F~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 634 FTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred HhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 9999999999995 5899999999999999999999999999999999998543
No 24
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=8.4e-19 Score=137.76 Aligned_cols=134 Identities=23% Similarity=0.373 Sum_probs=111.4
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCC---------------CC-----------
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDG---------------SK----------- 57 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~---------------~~----------- 57 (240)
|+.++|-|||.|...++|+.||..|||..-.....+|.|+|+.......... ..
T Consensus 165 tg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~ 244 (360)
T KOG0145|consen 165 TGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDN 244 (360)
T ss_pred cceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhcccc
Confidence 6788999999999999999999999998775557899999998654221100 00
Q ss_pred --------------------------CCCCCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeE
Q 026341 58 --------------------------SMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFA 103 (240)
Q Consensus 58 --------------------------~~~~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~a 103 (240)
.+.....+.+|||.|| ..++++.-|+++|.+||.|..|+|. |||+
T Consensus 245 ~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNL-spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfg 323 (360)
T KOG0145|consen 245 LLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNL-SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFG 323 (360)
T ss_pred ccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEec-CCCchHhHHHHHhCcccceeeEEEEecCCccccccee
Confidence 1112234689999999 6689999999999999999999984 7999
Q ss_pred EEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecC
Q 026341 104 FVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138 (240)
Q Consensus 104 fV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 138 (240)
||.+.+-++|..||..|||..+.++.|.|.|...+
T Consensus 324 FVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 324 FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred EEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 99999999999999999999999999999996543
No 25
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=2.6e-20 Score=152.45 Aligned_cols=131 Identities=18% Similarity=0.302 Sum_probs=109.9
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHH
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDI 83 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l 83 (240)
|+++||||||||+-+|.|..|++.|||..+ +|+.|+|....+.......-............|||..+ ..+.+++||
T Consensus 151 T~kHKgFAFVEYEvPEaAqLAlEqMNg~ml--GGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSv-HpDLSe~Di 227 (544)
T KOG0124|consen 151 TGKHKGFAFVEYEVPEAAQLALEQMNGQML--GGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASV-HPDLSETDI 227 (544)
T ss_pred cccccceEEEEEeCcHHHHHHHHHhccccc--cCccccccCCCCCcccchHHHHHHHHHHhhheEEeeec-CCCccHHHH
Confidence 789999999999999999999999999999 79999999665433221110001113344789999999 668999999
Q ss_pred HHhhccCCCeEEEEE--------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeec
Q 026341 84 KRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 137 (240)
Q Consensus 84 ~~~f~~~G~i~~~~~--------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 137 (240)
+.+|+.||+|..|.+ .+||+||+|.+.....+||..||-..++|+-|.|-.+..
T Consensus 228 KSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 228 KSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred HHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 999999999999999 379999999999999999999999999999999877653
No 26
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=5.1e-19 Score=151.44 Aligned_cols=134 Identities=33% Similarity=0.529 Sum_probs=108.1
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCC-----------------------------
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHR----------------------------- 53 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~----------------------------- 53 (240)
..+++-|||||+|.+..+|++||+.||+..| +|++|.|.||..+..-..
T Consensus 153 ~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i--~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~ 230 (678)
T KOG0127|consen 153 KDGKLCGFAFVQFKEKKDAEKALEFFNGNKI--DGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDF 230 (678)
T ss_pred CCCCccceEEEEEeeHHHHHHHHHhccCcee--cCceeEEeeecccccccccchhhhhhhhhccchhhhccccccccccc
Confidence 3566789999999999999999999999999 799999999984431000
Q ss_pred ---------------CC---------CC--------------------------CCCCCCCCCEEEEeccCCCCCCHHHH
Q 026341 54 ---------------DG---------SK--------------------------SMANQRPTKTLFVINFDPIRTRERDI 83 (240)
Q Consensus 54 ---------------~~---------~~--------------------------~~~~~~~~~~l~v~nl~~~~~~~~~l 83 (240)
.+ .. .........+|||.|| |+++++++|
T Consensus 231 ~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL-~fD~tEEel 309 (678)
T KOG0127|consen 231 DEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNL-PFDTTEEEL 309 (678)
T ss_pred chhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecC-CccccHHHH
Confidence 00 00 0011223479999999 999999999
Q ss_pred HHhhccCCCeEEEEE--------eCCeEEEEecCHHHHHHHHHhc-----CC-CcccCcEEEEEEeecCC
Q 026341 84 KRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALEST-----DR-SKLVDRVISVEYALKDD 139 (240)
Q Consensus 84 ~~~f~~~G~i~~~~~--------~kg~afV~f~~~~~a~~A~~~l-----~g-~~~~g~~l~v~~a~~~~ 139 (240)
.++|++||+|.++.| ++|.|||.|.+..+|++||... .| ..|+|+.|.|..|....
T Consensus 310 ~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 310 KEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred HHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchH
Confidence 999999999999887 4799999999999999999976 23 57899999999987543
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.80 E-value=3.4e-19 Score=158.91 Aligned_cols=118 Identities=29% Similarity=0.417 Sum_probs=99.7
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHH
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERD 82 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~ 82 (240)
.+++++|||||+|.++++|++||+.||+..|. .|+.|.|.++. ..++|||+|| |..+++++
T Consensus 94 ~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~-~Gr~l~V~~S~-----------------~~~rLFVgNL-P~~~Teee 154 (578)
T TIGR01648 94 FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIR-PGRLLGVCISV-----------------DNCRLFVGGI-PKNKKREE 154 (578)
T ss_pred CCCCccceEEEEeCCHHHHHHHHHHcCCCeec-CCccccccccc-----------------cCceeEeecC-CcchhhHH
Confidence 46789999999999999999999999999885 57888776653 2578999999 89999999
Q ss_pred HHHhhccCCC-eEEEEE---------eCCeEEEEecCHHHHHHHHHhcCC--CcccCcEEEEEEeecCC
Q 026341 83 IKRHFEPYGN-VLHVRI---------RRNFAFVQFETQEEATKALESTDR--SKLVDRVISVEYALKDD 139 (240)
Q Consensus 83 l~~~f~~~G~-i~~~~~---------~kg~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~v~~a~~~~ 139 (240)
|.++|.+++. ++.+.+ .++||||+|.++++|+.|+..|+. ..+.|+.|.|+|+.+..
T Consensus 155 L~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 155 ILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEE 223 (578)
T ss_pred HHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccc
Confidence 9999999863 444433 268999999999999999998864 35789999999998654
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.79 E-value=4.2e-18 Score=151.11 Aligned_cols=131 Identities=21% Similarity=0.361 Sum_probs=103.3
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCC------------------------------
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHR------------------------------ 53 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~------------------------------ 53 (240)
+++++|||||+|.+.++|.+|+..|||..| .|++|.|.|+........
T Consensus 224 ~g~~~g~afV~f~~~e~A~~A~~~l~g~~i--~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (457)
T TIGR01622 224 TGRSKGFGFIQFHDAEEAKEALEVMNGFEL--AGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKL 301 (457)
T ss_pred CCccceEEEEEECCHHHHHHHHHhcCCcEE--CCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhh
Confidence 567899999999999999999999999988 699999999652110000
Q ss_pred --CC-----------C-------------C-----------------------CCCCCCCCCEEEEeccCCCCCC-----
Q 026341 54 --DG-----------S-------------K-----------------------SMANQRPTKTLFVINFDPIRTR----- 79 (240)
Q Consensus 54 --~~-----------~-------------~-----------------------~~~~~~~~~~l~v~nl~~~~~~----- 79 (240)
.. . . ......+..+|+|.|| ....+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~-~~~~~~~~~~ 380 (457)
T TIGR01622 302 DRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNM-FDPATEEEPN 380 (457)
T ss_pred ccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecC-CCCcccccch
Confidence 00 0 0 0002245678999998 32222
Q ss_pred -----HHHHHHhhccCCCeEEEEEe----CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeec
Q 026341 80 -----ERDIKRHFEPYGNVLHVRIR----RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 137 (240)
Q Consensus 80 -----~~~l~~~f~~~G~i~~~~~~----kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 137 (240)
.+||++.|.+||.|+.|.|. .|++||+|.+.++|++|++.|||..|+|+.|.|.+...
T Consensus 381 ~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 381 FDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 36899999999999999885 68999999999999999999999999999999999754
No 29
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.78 E-value=7.7e-18 Score=126.02 Aligned_cols=79 Identities=27% Similarity=0.427 Sum_probs=72.2
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
.....++|||+|| ++.+++++|+++|.+||.|..|.|+ ++||||+|.+.++|+.||+.||+..|+|+.|.|
T Consensus 30 ~~~~~~~lfVgnL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V 108 (144)
T PLN03134 30 LRLMSTKLFIGGL-SWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108 (144)
T ss_pred ccCCCCEEEEeCC-CCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3445789999999 8999999999999999999999884 689999999999999999999999999999999
Q ss_pred EEeecCCC
Q 026341 133 EYALKDDS 140 (240)
Q Consensus 133 ~~a~~~~~ 140 (240)
+++.....
T Consensus 109 ~~a~~~~~ 116 (144)
T PLN03134 109 NPANDRPS 116 (144)
T ss_pred EeCCcCCC
Confidence 99986544
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=4.6e-18 Score=145.20 Aligned_cols=114 Identities=24% Similarity=0.485 Sum_probs=104.8
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHHHHh
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRH 86 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~ 86 (240)
+-|||||.|.++++|++||.+||...| .|++|.|-|+..... .|||.|| +..++..+|.++
T Consensus 36 slgy~yvnf~~~~da~~A~~~~n~~~~--~~~~~rim~s~rd~~----------------~~~i~nl-~~~~~~~~~~d~ 96 (369)
T KOG0123|consen 36 SLGYAYVNFQQPADAERALDTMNFDVL--KGKPIRIMWSQRDPS----------------LVFIKNL-DESIDNKSLYDT 96 (369)
T ss_pred ccceEEEecCCHHHHHHHHHHcCCccc--CCcEEEeehhccCCc----------------eeeecCC-CcccCcHHHHHH
Confidence 789999999999999999999999999 699999999985431 2999999 789999999999
Q ss_pred hccCCCeEEEEE------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCCC
Q 026341 87 FEPYGNVLHVRI------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 140 (240)
Q Consensus 87 f~~~G~i~~~~~------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 140 (240)
|+.||+|+.|++ .+|| ||+|+++++|.+||..|||..+.|+.|.|.....+..
T Consensus 97 f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 97 FSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred HHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 999999999999 3789 9999999999999999999999999999988876554
No 31
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=2.5e-18 Score=134.22 Aligned_cols=122 Identities=47% Similarity=0.665 Sum_probs=101.9
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCC---CC------CCCCCCCCCCCEEEEeccCCCCC
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHR---DG------SKSMANQRPTKTLFVINFDPIRT 78 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~---~~------~~~~~~~~~~~~l~v~nl~~~~~ 78 (240)
.|||||+|+++.+|+.||..||+.+|+ |..+.|+|+........ .+ ..-.......+.|+|.|+ +..+
T Consensus 35 ~gf~fv~fed~rda~Dav~~l~~~~l~--~e~~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~-~~r~ 111 (216)
T KOG0106|consen 35 NGFGFVEFEDPRDADDAVHDLDGKELC--GERLVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNL-SLRV 111 (216)
T ss_pred cccceeccCchhhhhcccchhcCceec--ceeeeeecccccccccCCCCCCCccchhhccCCcccccceeeeccc-hhhh
Confidence 799999999999999999999999995 66699999995422110 00 011122345678889999 7789
Q ss_pred CHHHHHHhhccCCCeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 79 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 79 ~~~~l~~~f~~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
.+++|.++|.++|.+....+..+++||+|++.++|..|+..|++..+.++.|.+
T Consensus 112 ~~qdl~d~~~~~g~~~~~~~~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 112 SWQDLKDHFRPAGEVTYVDARRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred hHHHHhhhhcccCCCchhhhhccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 999999999999999887778999999999999999999999999999999999
No 32
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=2.1e-15 Score=120.84 Aligned_cols=80 Identities=30% Similarity=0.518 Sum_probs=73.4
Q ss_pred CCCCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEE
Q 026341 59 MANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVI 130 (240)
Q Consensus 59 ~~~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~--------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l 130 (240)
.+...|.+||||+-| ++.+++..|+..|+.||+|..|.| ++|||||+|+++.+...|.+..+|.+|+|+.|
T Consensus 95 ~a~gDPy~TLFv~RL-nydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 95 NAIGDPYKTLFVARL-NYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred cccCCccceeeeeec-cccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 346688999999999 999999999999999999999998 47999999999999999999999999999999
Q ss_pred EEEEeecCC
Q 026341 131 SVEYALKDD 139 (240)
Q Consensus 131 ~v~~a~~~~ 139 (240)
.|.+-....
T Consensus 174 ~VDvERgRT 182 (335)
T KOG0113|consen 174 LVDVERGRT 182 (335)
T ss_pred EEEeccccc
Confidence 999876543
No 33
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.68 E-value=6.5e-16 Score=119.68 Aligned_cols=133 Identities=22% Similarity=0.422 Sum_probs=109.9
Q ss_pred CcccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCC-------------------------C
Q 026341 1 MCISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRD-------------------------G 55 (240)
Q Consensus 1 ~~~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~-------------------------~ 55 (240)
+++|.+++|.|||.|.+.+.|..|+..|+|..|+ |++|.|+||..+...-.. .
T Consensus 45 a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFy--gK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ 122 (221)
T KOG4206|consen 45 AFKTPKMRGQAFVVFKETEAASAALRALQGFPFY--GKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDT 122 (221)
T ss_pred ecCCCCccCceEEEecChhHHHHHHHHhcCCccc--CchhheecccCccchhhccCceeccccCccccccccccCCcccc
Confidence 4689999999999999999999999999999996 999999999854321100 0
Q ss_pred CCC--------------CCCCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE---eCCeEEEEecCHHHHHHHHH
Q 026341 56 SKS--------------MANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALE 118 (240)
Q Consensus 56 ~~~--------------~~~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~---~kg~afV~f~~~~~a~~A~~ 118 (240)
+.. ....++...|++.|| |..++.+.|..+|.+|.....+.+ ..+.|||+|.+...|..|..
T Consensus 123 ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~ni-P~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~ 201 (221)
T KOG4206|consen 123 NGHFYNMNRMNLPPPFLAQMAPPNNILFLTNI-PSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQ 201 (221)
T ss_pred cccccccccccCCCCccccCCCCceEEEEecC-CcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhh
Confidence 000 123677889999999 889999999999999987777776 46899999999999999999
Q ss_pred hcCCCccc-CcEEEEEEee
Q 026341 119 STDRSKLV-DRVISVEYAL 136 (240)
Q Consensus 119 ~l~g~~~~-g~~l~v~~a~ 136 (240)
.|++..|- ..++.|.++.
T Consensus 202 ~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 202 ALQGFKITKKNTMQITFAK 220 (221)
T ss_pred hhccceeccCceEEecccC
Confidence 99998886 7888887764
No 34
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=8.7e-17 Score=126.96 Aligned_cols=80 Identities=18% Similarity=0.431 Sum_probs=72.9
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~--------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
..+.+|.|||.+| |....+.+|.++|-.||.|...++ .|+|+||.|++..+|+.||..|||..|+-+.|+|
T Consensus 281 eGPeGCNlFIYHL-PQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 281 EGPEGCNLFIYHL-PQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred cCCCcceEEEEeC-chhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 4566899999999 889999999999999999988777 4899999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 026341 133 EYALKDDSE 141 (240)
Q Consensus 133 ~~a~~~~~~ 141 (240)
.+.++++..
T Consensus 360 QLKRPkdan 368 (371)
T KOG0146|consen 360 QLKRPKDAN 368 (371)
T ss_pred hhcCccccC
Confidence 998877643
No 35
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.67 E-value=1.2e-16 Score=137.43 Aligned_cols=132 Identities=27% Similarity=0.429 Sum_probs=108.1
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCC---CCCCCCCCEEEEeccCCCCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKS---MANQRPTKTLFVINFDPIRTR 79 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~---~~~~~~~~~l~v~nl~~~~~~ 79 (240)
.++.+||.|||+|.|.+..-.||. |.|..++ |.+|.|+.....+......... .....|...|||+|| .++++
T Consensus 216 ~s~rskgi~Yvef~D~~sVp~aia-LsGqrll--g~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnL-HfNit 291 (549)
T KOG0147|consen 216 NSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLL--GVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNL-HFNIT 291 (549)
T ss_pred cchhhcceeEEEEecccchhhHhh-hcCCccc--CceeEecccHHHHHHHHhccccccccccccchhhhhhccc-ccCch
Confidence 356689999999999999999996 9999884 9999999877554432111110 111233444999999 89999
Q ss_pred HHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecC
Q 026341 80 ERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138 (240)
Q Consensus 80 ~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 138 (240)
+++|+.+|+.||.|..|.++ +||+||+|.+.++|.+|++.|||.+|.|+.|+|......
T Consensus 292 e~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 292 EDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred HHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 99999999999999999884 799999999999999999999999999999998887643
No 36
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=3.3e-14 Score=106.72 Aligned_cols=125 Identities=30% Similarity=0.451 Sum_probs=99.7
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCC---------------CCCCCCCCCCCEEEEe
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDG---------------SKSMANQRPTKTLFVI 71 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~---------------~~~~~~~~~~~~l~v~ 71 (240)
..+||||+|+++.+|+.||..-+|..+ +|..|.|+|+..-....... ..-+..-.....|.|.
T Consensus 44 ~ppfafVeFEd~RDAeDAiygRdGYdy--dg~rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVs 121 (241)
T KOG0105|consen 44 PPPFAFVEFEDPRDAEDAIYGRDGYDY--DGCRLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVS 121 (241)
T ss_pred CCCeeEEEecCccchhhhhhccccccc--CcceEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEe
Confidence 368999999999999999999999999 79999999998654221110 0012223335679999
Q ss_pred ccCCCCCCHHHHHHhhccCCCeEEEEEeC-CeEEEEecCHHHHHHHHHhcCCCccc--CcEEEEEE
Q 026341 72 NFDPIRTRERDIKRHFEPYGNVLHVRIRR-NFAFVQFETQEEATKALESTDRSKLV--DRVISVEY 134 (240)
Q Consensus 72 nl~~~~~~~~~l~~~f~~~G~i~~~~~~k-g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~ 134 (240)
+| |...+|+||++++.+.|.|.+..+.+ +++.|+|...|+.+-|+..|+.+.+. |.+..+.+
T Consensus 122 GL-p~SgSWQDLKDHmReaGdvCfadv~rDg~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 122 GL-PPSGSWQDLKDHMREAGDVCFADVQRDGVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred cC-CCCCchHHHHHHHHhhCCeeeeeeecccceeeeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 99 77899999999999999999999864 89999999999999999999887664 44444433
No 37
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=2.5e-15 Score=112.73 Aligned_cols=76 Identities=28% Similarity=0.499 Sum_probs=70.4
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe-----CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeec
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-----RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 137 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~-----kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 137 (240)
...+.|||+|| |.++.+.+|+++|.+||.|..|.|. ..||||+|++..+|+.||..-+|..++|+.|.|+|+..
T Consensus 4 r~~~~iyvGNL-P~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 4 RNSRRIYVGNL-PGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cccceEEecCC-CcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 34789999999 8899999999999999999999994 47999999999999999999999999999999999986
Q ss_pred CC
Q 026341 138 DD 139 (240)
Q Consensus 138 ~~ 139 (240)
-.
T Consensus 83 gr 84 (241)
T KOG0105|consen 83 GR 84 (241)
T ss_pred CC
Confidence 54
No 38
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=2.1e-15 Score=128.97 Aligned_cols=124 Identities=26% Similarity=0.450 Sum_probs=108.0
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHHHHh
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRH 86 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~ 86 (240)
++|| ||+|+++++|.+||..|||..+ .+++|.|..+..+........ . .....+.++|.|+ +..+++++|.++
T Consensus 115 ~kg~-FV~f~~e~~a~~ai~~~ng~ll--~~kki~vg~~~~~~er~~~~~--~-~~~~~t~v~vk~~-~~~~~~~~l~~~ 187 (369)
T KOG0123|consen 115 SKGY-FVQFESEESAKKAIEKLNGMLL--NGKKIYVGLFERKEEREAPLG--E-YKKRFTNVYVKNL-EEDSTDEELKDL 187 (369)
T ss_pred ceee-EEEeCCHHHHHHHHHHhcCccc--CCCeeEEeeccchhhhccccc--c-hhhhhhhhheecc-ccccchHHHHHh
Confidence 7999 9999999999999999999999 699999998887655432111 1 3345678999999 889999999999
Q ss_pred hccCCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeec
Q 026341 87 FEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 137 (240)
Q Consensus 87 f~~~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 137 (240)
|..+|.|..+.++ ++|+||+|++.++|..|+..||+..+.+..+.|.-+..
T Consensus 188 f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 188 FSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred hcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeeccccc
Confidence 9999999999884 68999999999999999999999999999999888776
No 39
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.57 E-value=1.2e-14 Score=123.55 Aligned_cols=77 Identities=21% Similarity=0.408 Sum_probs=71.0
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
.....++|||+|| |+++++++|+++|+.||+|+.|.|. ++||||+|.++++|++||+.||+..|.+++|+|
T Consensus 103 ~~~~~~~LfVgnL-p~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 103 TNNSGTNLIVNYL-PQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 4556789999999 9999999999999999999999884 489999999999999999999999999999999
Q ss_pred EEeecC
Q 026341 133 EYALKD 138 (240)
Q Consensus 133 ~~a~~~ 138 (240)
.++.+.
T Consensus 182 ~~a~p~ 187 (346)
T TIGR01659 182 SYARPG 187 (346)
T ss_pred eccccc
Confidence 998753
No 40
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.57 E-value=1e-14 Score=95.49 Aligned_cols=63 Identities=33% Similarity=0.667 Sum_probs=59.2
Q ss_pred EEEeccCCCCCCHHHHHHhhccCCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEE
Q 026341 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVIS 131 (240)
Q Consensus 68 l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 131 (240)
|||+|| |..+++++|+++|.+||.|..+.+. +++|||+|.+.++|+.|++.|||..|.|+.|+
T Consensus 1 l~v~nl-p~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNL-PPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESE-TTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCC-CCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999 8999999999999999999998883 57999999999999999999999999999874
No 41
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=1.3e-14 Score=103.39 Aligned_cols=81 Identities=22% Similarity=0.454 Sum_probs=73.6
Q ss_pred CCCCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEE
Q 026341 59 MANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVI 130 (240)
Q Consensus 59 ~~~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~--------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l 130 (240)
++....+..|||.++ ...+++++|.+.|..||+|+.+.| .||||+|+|++.++|++||..|||..|.|+.|
T Consensus 66 PqrSVEGwIi~Vtgv-HeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v 144 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGV-HEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNV 144 (170)
T ss_pred CccceeeEEEEEecc-CcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCce
Confidence 345556889999999 788999999999999999999988 38999999999999999999999999999999
Q ss_pred EEEEeecCCC
Q 026341 131 SVEYALKDDS 140 (240)
Q Consensus 131 ~v~~a~~~~~ 140 (240)
.|.|+..+..
T Consensus 145 ~VDw~Fv~gp 154 (170)
T KOG0130|consen 145 SVDWCFVKGP 154 (170)
T ss_pred eEEEEEecCC
Confidence 9999987643
No 42
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.9e-14 Score=120.54 Aligned_cols=77 Identities=21% Similarity=0.487 Sum_probs=69.8
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~--------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
..+.+..|||.+| |...-+.+|-..|..||.|+..++ .+.|+||.|++..+|.+||..|||..|+.+.|+|
T Consensus 420 eGpeGanlfiyhl-Pqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkV 498 (510)
T KOG0144|consen 420 EGPEGANLFIYHL-PQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKV 498 (510)
T ss_pred cCCCccceeeeeC-chhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceE
Confidence 4556788999999 989999999999999999988776 3789999999999999999999999999999999
Q ss_pred EEeecC
Q 026341 133 EYALKD 138 (240)
Q Consensus 133 ~~a~~~ 138 (240)
......
T Consensus 499 Qlk~~~ 504 (510)
T KOG0144|consen 499 QLKRDR 504 (510)
T ss_pred Eeeecc
Confidence 987654
No 43
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.6e-14 Score=102.16 Aligned_cols=77 Identities=25% Similarity=0.404 Sum_probs=70.3
Q ss_pred CCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEE
Q 026341 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 133 (240)
Q Consensus 62 ~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~--------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 133 (240)
....++|||+|| .+.++|++|.++|+++|+|..|.| +-|||||+|.+.++|+.|+..++|+.++.++|.|.
T Consensus 33 ~r~S~tvyVgNl-SfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 33 LRKSCTVYVGNL-SFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HhhcceEEEeee-eeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 345899999999 889999999999999999999988 35899999999999999999999999999999999
Q ss_pred EeecCC
Q 026341 134 YALKDD 139 (240)
Q Consensus 134 ~a~~~~ 139 (240)
|...-.
T Consensus 112 ~D~GF~ 117 (153)
T KOG0121|consen 112 WDAGFV 117 (153)
T ss_pred ccccch
Confidence 976543
No 44
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=1.6e-14 Score=117.24 Aligned_cols=73 Identities=34% Similarity=0.552 Sum_probs=69.2
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeec
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 137 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 137 (240)
..+.|+|+|| |+...+.||..+|.+||+|.+|.| .|||+||+|++.++|++|-++|||..|.|++|+|..|..
T Consensus 95 ~pkRLhVSNI-PFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 95 TPKRLHVSNI-PFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCceeEeecC-CccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 3578999999 999999999999999999999999 489999999999999999999999999999999999875
No 45
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.53 E-value=2.4e-13 Score=112.18 Aligned_cols=130 Identities=20% Similarity=0.204 Sum_probs=109.5
Q ss_pred eEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCC---------------------------C--------
Q 026341 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHR---------------------------D-------- 54 (240)
Q Consensus 10 ~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~---------------------------~-------- 54 (240)
.|.|||++.+.|++|.+.|||..|+-+...|+|+||++.+-.-. .
T Consensus 161 QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~ 240 (494)
T KOG1456|consen 161 QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGY 240 (494)
T ss_pred eeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCC
Confidence 79999999999999999999999987778999999996541000 0
Q ss_pred ------C------------------------------CCCCCCCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE
Q 026341 55 ------G------------------------------SKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI 98 (240)
Q Consensus 55 ------~------------------------------~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~ 98 (240)
+ ...+....+++++.|.+|....++.+.|.++|..||.|..|++
T Consensus 241 ~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkF 320 (494)
T KOG1456|consen 241 HPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKF 320 (494)
T ss_pred ChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEE
Confidence 0 0012345668899999997677889999999999999999999
Q ss_pred eC---CeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCC
Q 026341 99 RR---NFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 139 (240)
Q Consensus 99 ~k---g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 139 (240)
+| |-|+||+.+..+.+.|+..||+..+-|.+|.|.+++..-
T Consensus 321 mkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~ 364 (494)
T KOG1456|consen 321 MKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNF 364 (494)
T ss_pred eecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccc
Confidence 64 899999999999999999999999999999999987654
No 46
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.52 E-value=6.9e-14 Score=112.23 Aligned_cols=72 Identities=28% Similarity=0.427 Sum_probs=67.2
Q ss_pred CCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe-----CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecC
Q 026341 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-----RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138 (240)
Q Consensus 65 ~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~-----kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 138 (240)
.++|||+|| ++.+++++|+++|+.||+|..|.|. ++||||+|.++++|+.||. |||..|.|+.|.|.++...
T Consensus 4 ~rtVfVgNL-s~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNV-SLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 579999999 8899999999999999999999994 6899999999999999996 9999999999999998654
No 47
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.51 E-value=1e-13 Score=119.46 Aligned_cols=133 Identities=21% Similarity=0.340 Sum_probs=99.6
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCC-------------C------C--------
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRD-------------G------S-------- 56 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~-------------~------~-------- 56 (240)
||.+||||||+|.+.++|.+|++.|||.+| .|+.|+|..-......... + .
T Consensus 316 tG~skgfGfi~f~~~~~ar~a~e~lngfel--AGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kl 393 (549)
T KOG0147|consen 316 TGRSKGFGFITFVNKEDARKALEQLNGFEL--AGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKL 393 (549)
T ss_pred cccccCcceEEEecHHHHHHHHHHhcccee--cCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHH
Confidence 899999999999999999999999999777 7999998755421111000 0 0
Q ss_pred ----C------------------------------CCCCC-------CCCCEEEEeccC-CCCCC--------HHHHHHh
Q 026341 57 ----K------------------------------SMANQ-------RPTKTLFVINFD-PIRTR--------ERDIKRH 86 (240)
Q Consensus 57 ----~------------------------------~~~~~-------~~~~~l~v~nl~-~~~~~--------~~~l~~~ 86 (240)
. ..... .++.++.+.|+- |...| .++|.+.
T Consensus 394 a~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Ee 473 (549)
T KOG0147|consen 394 AEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEE 473 (549)
T ss_pred hccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHH
Confidence 0 00011 345566777761 11111 2677888
Q ss_pred hccCCCeEEEEEe---CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecC
Q 026341 87 FEPYGNVLHVRIR---RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138 (240)
Q Consensus 87 f~~~G~i~~~~~~---kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 138 (240)
+.+||+|..|.|- -|+.||.|.+.+.|..|+.+|||..|.|+.|++.|....
T Consensus 474 c~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~ 528 (549)
T KOG0147|consen 474 CGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLE 528 (549)
T ss_pred HHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehh
Confidence 8999999999983 389999999999999999999999999999999997643
No 48
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1.5e-13 Score=107.53 Aligned_cols=74 Identities=27% Similarity=0.523 Sum_probs=69.7
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEe
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~--------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 135 (240)
..++|-|.|| +.++++.+|+++|.+||.|..|.| .+|||||.|.+.++|++||..|||.-+++-.|.|+|+
T Consensus 188 D~~tvRvtNL-sed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNL-SEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecC-ccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 4578999999 899999999999999999999988 4799999999999999999999999999999999999
Q ss_pred ecC
Q 026341 136 LKD 138 (240)
Q Consensus 136 ~~~ 138 (240)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 875
No 49
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.47 E-value=1e-13 Score=114.98 Aligned_cols=130 Identities=25% Similarity=0.402 Sum_probs=106.8
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHH
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDI 83 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l 83 (240)
++.++||+||+|++++....+|.....+ | +|+.|.+.-|.+........ .......|||++| +..+++++|
T Consensus 44 t~rsrgFgfv~f~~~~~v~~vl~~~~h~-~--dgr~ve~k~av~r~~~~~~~-----~~~~tkkiFvGG~-~~~~~e~~~ 114 (311)
T KOG4205|consen 44 TGRSRGFGFVTFATPEGVDAVLNARTHK-L--DGRSVEPKRAVSREDQTKVG-----RHLRTKKIFVGGL-PPDTTEEDF 114 (311)
T ss_pred CCCcccccceecCCCcchheeecccccc-c--CCccccceeccCcccccccc-----cccceeEEEecCc-CCCCchHHH
Confidence 6788999999999999988888643333 4 69999999888766543221 2225789999999 899999999
Q ss_pred HHhhccCCCeEEEEE--------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCCCCCC
Q 026341 84 KRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERD 143 (240)
Q Consensus 84 ~~~f~~~G~i~~~~~--------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 143 (240)
++.|.+||.|..+.+ +++|+||.|.+++.+.+++. .+-+.|+|+.|.|..|.++.....
T Consensus 115 r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 115 KDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVMQS 181 (311)
T ss_pred hhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccchhhccc
Confidence 999999998888877 37999999999999999886 577899999999999998776543
No 50
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=4e-13 Score=91.60 Aligned_cols=76 Identities=25% Similarity=0.448 Sum_probs=69.9
Q ss_pred CCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE-----eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEee
Q 026341 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136 (240)
Q Consensus 62 ~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~-----~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 136 (240)
...+..|||.|| |+.+|.+++.++|.+||.|..|.| .+|-|||.|++..+|.+|+..|+|..++++.|.|-+-.
T Consensus 15 pevnriLyirNL-p~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 15 PEVNRILYIRNL-PFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hhhheeEEEecC-CccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 344688999999 999999999999999999999999 47999999999999999999999999999999998866
Q ss_pred cC
Q 026341 137 KD 138 (240)
Q Consensus 137 ~~ 138 (240)
+.
T Consensus 94 ~~ 95 (124)
T KOG0114|consen 94 PE 95 (124)
T ss_pred HH
Confidence 54
No 51
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.45 E-value=4e-13 Score=88.12 Aligned_cols=63 Identities=35% Similarity=0.664 Sum_probs=56.7
Q ss_pred EEEeccCCCCCCHHHHHHhhccCCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEE
Q 026341 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVIS 131 (240)
Q Consensus 68 l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 131 (240)
|||+|| |..+++++|.++|..||.|..+.+. +++|||+|.++++|+.|++.+++..|+|+.|.
T Consensus 1 v~i~nl-p~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNL-PPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESS-TTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999 8899999999999999999998883 47999999999999999999999999999874
No 52
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.44 E-value=1.3e-13 Score=110.35 Aligned_cols=73 Identities=30% Similarity=0.499 Sum_probs=70.0
Q ss_pred CEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCC
Q 026341 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 139 (240)
Q Consensus 66 ~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 139 (240)
..|||+|| |..+++.+|+.+|++||+|+.|.|.|.||||..++...|+.||..|||..|+|..|.|+-++.+.
T Consensus 3 ~KLFIGNL-p~~~~~~elr~lFe~ygkVlECDIvKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNL-PREATEQELRSLFEQYGKVLECDIVKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred cchhccCC-CcccchHHHHHHHHhhCceEeeeeecccceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 46999999 99999999999999999999999999999999999999999999999999999999999998773
No 53
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.43 E-value=7.4e-13 Score=102.33 Aligned_cols=117 Identities=26% Similarity=0.389 Sum_probs=90.0
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccC-CCceEEEEeccCCCCCCCCC--C----C-----------------------
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGY-DRRRLSVEWARGERGRHRDG--S----K----------------------- 57 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~-~g~~l~v~~a~~~~~~~~~~--~----~----------------------- 57 (240)
+-+|||+|.+..+|.+|+..|||+.|.. -+..|.|++++...+..... . .
T Consensus 77 ~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~ 156 (284)
T KOG1457|consen 77 KPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEG 156 (284)
T ss_pred cceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhcccc
Confidence 5799999999999999999999998832 37889999998543221100 0 0
Q ss_pred ----------------------------------------------CCCCCCCCCEEEEeccCCCCCCHHHHHHhhccCC
Q 026341 58 ----------------------------------------------SMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 91 (240)
Q Consensus 58 ----------------------------------------------~~~~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G 91 (240)
-......+.+|||.|| ..++++++|+++|..|-
T Consensus 157 l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl-~~~~~ed~l~~~~~~~~ 235 (284)
T KOG1457|consen 157 LSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANL-GPNCTEDELKQLLSRYP 235 (284)
T ss_pred ccCccccCCccccccCCCccccchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhcc-CCCCCHHHHHHHHHhCC
Confidence 0011223578999999 66899999999999997
Q ss_pred CeEEEEEe--C--CeEEEEecCHHHHHHHHHhcCCCcc
Q 026341 92 NVLHVRIR--R--NFAFVQFETQEEATKALESTDRSKL 125 (240)
Q Consensus 92 ~i~~~~~~--k--g~afV~f~~~~~a~~A~~~l~g~~~ 125 (240)
....++|. . .+|||+|++.+.|..||..|+|..|
T Consensus 236 gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 236 GFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred CceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 66666663 2 3899999999999999999998765
No 54
>PLN03213 repressor of silencing 3; Provisional
Probab=99.43 E-value=5.4e-13 Score=113.75 Aligned_cols=74 Identities=22% Similarity=0.284 Sum_probs=69.1
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe----CCeEEEEecCH--HHHHHHHHhcCCCcccCcEEEEEEee
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR----RNFAFVQFETQ--EEATKALESTDRSKLVDRVISVEYAL 136 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~----kg~afV~f~~~--~~a~~A~~~l~g~~~~g~~l~v~~a~ 136 (240)
..+..|||||| ++.+++++|..+|..||.|..|.|+ +|||||+|.+. .++.+||..|||..+.|+.|+|+.|+
T Consensus 8 ~~gMRIYVGNL-SydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 8 GGGVRLHVGGL-GESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CcceEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 44689999999 9999999999999999999999997 68999999987 78999999999999999999999998
Q ss_pred c
Q 026341 137 K 137 (240)
Q Consensus 137 ~ 137 (240)
+
T Consensus 87 P 87 (759)
T PLN03213 87 E 87 (759)
T ss_pred H
Confidence 4
No 55
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=7.1e-13 Score=115.36 Aligned_cols=131 Identities=24% Similarity=0.367 Sum_probs=99.9
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCC-------------CCCCCCCCCEEEE
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSK-------------SMANQRPTKTLFV 70 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~-------------~~~~~~~~~~l~v 70 (240)
++.++||||.+|.++..+..|++.|||+.+ ++++|.|+.|............ ......++.+|.+
T Consensus 327 ~g~skg~af~ey~dpsvtd~A~agLnGm~l--gd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L 404 (500)
T KOG0120|consen 327 TGNSKGFAFCEYCDPSVTDQAIAGLNGMQL--GDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCL 404 (500)
T ss_pred cccccceeeeeeeCCcchhhhhcccchhhh--cCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhh
Confidence 578899999999999999999999999999 5899999988754433221111 1223445556666
Q ss_pred eccC-CCC-CCH-------HHHHHhhccCCCeEEEEEe-----------CCeEEEEecCHHHHHHHHHhcCCCcccCcEE
Q 026341 71 INFD-PIR-TRE-------RDIKRHFEPYGNVLHVRIR-----------RNFAFVQFETQEEATKALESTDRSKLVDRVI 130 (240)
Q Consensus 71 ~nl~-~~~-~~~-------~~l~~~f~~~G~i~~~~~~-----------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l 130 (240)
.|+= +.. ..+ ++|+..+.+||.|..|.++ .|..||+|.+.++++.|+++|+|.+|.|++|
T Consensus 405 ~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtV 484 (500)
T KOG0120|consen 405 TNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTV 484 (500)
T ss_pred hhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEE
Confidence 5541 111 111 4566677899999999985 3689999999999999999999999999999
Q ss_pred EEEEee
Q 026341 131 SVEYAL 136 (240)
Q Consensus 131 ~v~~a~ 136 (240)
.+.|--
T Consensus 485 vtsYyd 490 (500)
T KOG0120|consen 485 VASYYD 490 (500)
T ss_pred EEEecC
Confidence 988854
No 56
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.40 E-value=1.7e-12 Score=102.71 Aligned_cols=72 Identities=22% Similarity=0.265 Sum_probs=66.3
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe-----CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeec
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-----RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 137 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~-----kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 137 (240)
.+.+|||+|| ++.+++++|+++|+.||+|..|.|. +++|||+|+++++|+.|+. |+|..|.++.|.|.....
T Consensus 4 ~g~TV~V~NL-S~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNL-SPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecC-CCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 4689999999 8899999999999999999999995 4799999999999999995 999999999999988664
No 57
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.39 E-value=2.2e-12 Score=80.85 Aligned_cols=53 Identities=34% Similarity=0.644 Sum_probs=49.2
Q ss_pred HHHhhccCCCeEEEEEeC---CeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEe
Q 026341 83 IKRHFEPYGNVLHVRIRR---NFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135 (240)
Q Consensus 83 l~~~f~~~G~i~~~~~~k---g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 135 (240)
|.++|++||+|..+.+.. ++|||+|.+.++|+.|+..|||..+.|++|.|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 678999999999999964 89999999999999999999999999999999986
No 58
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=1.3e-12 Score=115.75 Aligned_cols=124 Identities=29% Similarity=0.392 Sum_probs=99.9
Q ss_pred eEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC--CC-------CCC--------------------CC--
Q 026341 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR--HR-------DGS--------------------KS-- 58 (240)
Q Consensus 10 ~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~--~~-------~~~--------------------~~-- 58 (240)
-|.|+|.++.+|.+|+..|+...+ ...+|+++|+...... +. ... ..
T Consensus 423 ~aiv~fl~p~eAr~Afrklaysr~--k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~t 500 (725)
T KOG0110|consen 423 GAIVEFLNPLEARKAFRKLAYSRF--KSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPT 500 (725)
T ss_pred eeeeeecCccchHHHHHHhchhhh--ccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCcc
Confidence 389999999999999999999988 5888998887632211 00 000 00
Q ss_pred -------CCCCCCC-CEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe-----------CCeEEEEecCHHHHHHHHHh
Q 026341 59 -------MANQRPT-KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-----------RNFAFVQFETQEEATKALES 119 (240)
Q Consensus 59 -------~~~~~~~-~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~-----------kg~afV~f~~~~~a~~A~~~ 119 (240)
....... +.|||.|| ++.++.++|..+|...|.|..+.|. .|||||+|.+.++|+.|+..
T Consensus 501 e~ss~a~~a~~~~~~t~lfvkNl-nf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~ 579 (725)
T KOG0110|consen 501 EESSLARVAEDEETETKLFVKNL-NFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKA 579 (725)
T ss_pred ccccchhhhhccccchhhhhhcC-CcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHH
Confidence 0011112 33999999 9999999999999999999999883 39999999999999999999
Q ss_pred cCCCcccCcEEEEEEee
Q 026341 120 TDRSKLVDRVISVEYAL 136 (240)
Q Consensus 120 l~g~~~~g~~l~v~~a~ 136 (240)
|+|+.|+|+.|.|.++.
T Consensus 580 lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 580 LQGTVLDGHKLELKISE 596 (725)
T ss_pred hcCceecCceEEEEecc
Confidence 99999999999999998
No 59
>smart00362 RRM_2 RNA recognition motif.
Probab=99.38 E-value=2.7e-12 Score=83.59 Aligned_cols=66 Identities=44% Similarity=0.710 Sum_probs=60.8
Q ss_pred EEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEE
Q 026341 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 133 (240)
Q Consensus 67 ~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 133 (240)
+|+|.|| |..+++++|+++|.+||.|..+.+. +++|||+|.+.++|+.|+..|++..+.|..|.|+
T Consensus 1 ~v~i~~l-~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNL-PPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCC-CCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 4899999 8899999999999999999998874 3899999999999999999999999999998763
No 60
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.36 E-value=2e-12 Score=116.14 Aligned_cols=74 Identities=30% Similarity=0.482 Sum_probs=68.2
Q ss_pred CCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEE
Q 026341 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 133 (240)
Q Consensus 62 ~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~--------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 133 (240)
....++|||+|| ++.+++++|+++|.+||.|..|.| .+|||||+|.+.++|+.||+.|||..|.|+.|.|.
T Consensus 104 ~~~~~rLfVGnL-p~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~ 182 (612)
T TIGR01645 104 LAIMCRVYVGSI-SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 182 (612)
T ss_pred hcCCCEEEEcCC-CCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeec
Confidence 345789999999 999999999999999999999998 37999999999999999999999999999999998
Q ss_pred Eee
Q 026341 134 YAL 136 (240)
Q Consensus 134 ~a~ 136 (240)
+..
T Consensus 183 rp~ 185 (612)
T TIGR01645 183 RPS 185 (612)
T ss_pred ccc
Confidence 543
No 61
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=8.8e-13 Score=101.69 Aligned_cols=79 Identities=29% Similarity=0.552 Sum_probs=72.8
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEE
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 134 (240)
....+|||++| ...+++..|...|-+||.|..|.++ +|||||+|+-.|+|.+||..||+.+|.|++|.|.+
T Consensus 8 ~~KrtlYVGGl-adeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 8 NQKRTLYVGGL-ADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred ccceeEEeccc-hHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 44689999999 8899999999999999999999985 79999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 026341 135 ALKDDSER 142 (240)
Q Consensus 135 a~~~~~~~ 142 (240)
|++..-+.
T Consensus 87 AkP~kike 94 (298)
T KOG0111|consen 87 AKPEKIKE 94 (298)
T ss_pred cCCccccC
Confidence 99876543
No 62
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.34 E-value=1.2e-11 Score=105.70 Aligned_cols=130 Identities=25% Similarity=0.256 Sum_probs=96.6
Q ss_pred cccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHH
Q 026341 2 CISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRER 81 (240)
Q Consensus 2 ~~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~ 81 (240)
+.+++..|-|||||.+++++++|++ ++-+.+ +.+-|.|-.+........-....+....+..+|-+.+| |+.|+++
T Consensus 43 r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~m--g~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGL-Pfscte~ 118 (510)
T KOG4211|consen 43 RRNGRPSGEAYVEFTSEEDVEKALK-KDRESM--GHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGL-PFSCTEE 118 (510)
T ss_pred ccCCCcCcceEEEeechHHHHHHHH-hhHHHh--CCceEEEEccCCccccccccCCCCCCCCCCceEEecCC-CccCcHH
Confidence 3468999999999999999999998 666666 46767776665443221111111122245678999999 9999999
Q ss_pred HHHHhhccCCCeEE-EEE-------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEee
Q 026341 82 DIKRHFEPYGNVLH-VRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136 (240)
Q Consensus 82 ~l~~~f~~~G~i~~-~~~-------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 136 (240)
||.+||+..-.|.. +.+ +.|-|||+|++.+.|++|+.. |...|.-+-|.|-.+.
T Consensus 119 dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 119 DIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred HHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhH
Confidence 99999997744433 222 358999999999999999985 7778888888887664
No 63
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=1.9e-12 Score=100.98 Aligned_cols=72 Identities=22% Similarity=0.419 Sum_probs=65.0
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEe
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~--------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 135 (240)
..++|||++| +|.+..++|++.|++||+|++..| .|||+||+|.+.+.|..|++. -+-.|+|++..|++|
T Consensus 11 ~~TKifVggL-~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 11 TFTKIFVGGL-AWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred eEEEEEEcCc-ccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 4678999999 999999999999999999999887 389999999999999999985 456899999999998
Q ss_pred ec
Q 026341 136 LK 137 (240)
Q Consensus 136 ~~ 137 (240)
--
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 64
No 64
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.33 E-value=2.2e-12 Score=96.81 Aligned_cols=73 Identities=29% Similarity=0.396 Sum_probs=68.7
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEE
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 134 (240)
....+|||+|| +..++++.|+++|-+.|+|..+.++ +|||||+|.++|+|+-|++.||...+.|++|.|..
T Consensus 7 nqd~tiyvgnl-d~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 7 NQDATLYVGNL-DEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred CCCceEEEecC-CHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 45789999999 8899999999999999999999985 69999999999999999999999999999999999
Q ss_pred ee
Q 026341 135 AL 136 (240)
Q Consensus 135 a~ 136 (240)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 87
No 65
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=4.9e-12 Score=100.42 Aligned_cols=94 Identities=22% Similarity=0.468 Sum_probs=78.5
Q ss_pred eEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCH
Q 026341 39 RLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQ 110 (240)
Q Consensus 39 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~ 110 (240)
.|+|.|+.....+ ........-.|||+.| ...++.++|++.|.+||+|..++|. |||+||.|-+.
T Consensus 42 e~~v~wa~~p~nQ------sk~t~~~hfhvfvgdl-s~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k 114 (321)
T KOG0148|consen 42 ELKVNWATAPGNQ------SKPTSNQHFHVFVGDL-SPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNK 114 (321)
T ss_pred hhccccccCcccC------CCCccccceeEEehhc-chhcchHHHHHHhccccccccceEeecccCCcccceeEEeccch
Confidence 5667777654222 1223334678999999 6789999999999999999999983 79999999999
Q ss_pred HHHHHHHHhcCCCcccCcEEEEEEeecCC
Q 026341 111 EEATKALESTDRSKLVDRVISVEYALKDD 139 (240)
Q Consensus 111 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 139 (240)
++|+.||..|||+-|.++.|...||..+.
T Consensus 115 ~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 115 EDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred HHHHHHHHHhCCeeeccceeeccccccCc
Confidence 99999999999999999999999998765
No 66
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.31 E-value=3.4e-11 Score=98.73 Aligned_cols=133 Identities=20% Similarity=0.249 Sum_probs=103.9
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCC--------------------------
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGS-------------------------- 56 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~-------------------------- 56 (240)
+.|+.||=|.|.|...++++.|+..|++..| .|++|.|+-|.-..+......
T Consensus 178 ~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~--rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd 255 (382)
T KOG1548|consen 178 NQGKLKGDALCCYIKRESVELAIKILDEDEL--RGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPD 255 (382)
T ss_pred CCCCccCceEEEeecccHHHHHHHHhCcccc--cCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCC
Confidence 3578899999999999999999999999999 699999998873322111100
Q ss_pred -CCCCCCCCCCEEEEeccCC---CCCC-------HHHHHHhhccCCCeEEEEE----eCCeEEEEecCHHHHHHHHHhcC
Q 026341 57 -KSMANQRPTKTLFVINFDP---IRTR-------ERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATKALESTD 121 (240)
Q Consensus 57 -~~~~~~~~~~~l~v~nl~~---~~~~-------~~~l~~~f~~~G~i~~~~~----~kg~afV~f~~~~~a~~A~~~l~ 121 (240)
..+......++|.|.|+-. +..+ .++|.+-+.+||.|..|.| +.|.+-|.|.+.++|..||+.|+
T Consensus 256 ~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~ 335 (382)
T KOG1548|consen 256 RDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMD 335 (382)
T ss_pred ccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhc
Confidence 0122334567899998721 1223 3566777899999999988 58999999999999999999999
Q ss_pred CCcccCcEEEEEEeec
Q 026341 122 RSKLVDRVISVEYALK 137 (240)
Q Consensus 122 g~~~~g~~l~v~~a~~ 137 (240)
|..|+|+.|..++.-.
T Consensus 336 GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 336 GRWFDGRQLTASIWDG 351 (382)
T ss_pred CeeecceEEEEEEeCC
Confidence 9999999999887543
No 67
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=5e-13 Score=100.15 Aligned_cols=73 Identities=23% Similarity=0.473 Sum_probs=68.2
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEe
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 135 (240)
...-|||+|| |+..|+.||..+|++||+|+.|.+. +||||+.|++..+..-|+..|||..|.|+.|.|...
T Consensus 34 dsA~Iyiggl-~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGL-PYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCC-cccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 3678999999 9999999999999999999999994 799999999999999999999999999999999886
Q ss_pred ec
Q 026341 136 LK 137 (240)
Q Consensus 136 ~~ 137 (240)
..
T Consensus 113 ~~ 114 (219)
T KOG0126|consen 113 SN 114 (219)
T ss_pred cc
Confidence 54
No 68
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.30 E-value=1.9e-11 Score=79.98 Aligned_cols=67 Identities=45% Similarity=0.718 Sum_probs=62.0
Q ss_pred EEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEE
Q 026341 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134 (240)
Q Consensus 67 ~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 134 (240)
+|+|.|| |..+++++|.++|..+|.|..+.+. .++|||+|.+.++|..|++.+++..+.|..|.|.+
T Consensus 1 ~i~i~~l-~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNL-PPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCC-CCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999 8899999999999999999998884 58999999999999999999999999999998864
No 69
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.29 E-value=6e-11 Score=100.01 Aligned_cols=133 Identities=26% Similarity=0.374 Sum_probs=105.7
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCC------------------------------
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRH------------------------------ 52 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~------------------------------ 52 (240)
..++.+|+|.|||+++|.+++|++.||...+ .|++|+|+-........
T Consensus 81 ~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~--~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ 158 (608)
T KOG4212|consen 81 ESGKARGCAVVEFKDPENVQKALEKLNKYEV--NGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGG 158 (608)
T ss_pred cCCCcCCceEEEeeCHHHHHHHHHHhhhccc--cCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCC
Confidence 4789999999999999999999999999999 69999997544211000
Q ss_pred -----------CC--------CC-------------------------CCCCCCCCCCEEEEeccCCCCCCHHHHHHhhc
Q 026341 53 -----------RD--------GS-------------------------KSMANQRPTKTLFVINFDPIRTRERDIKRHFE 88 (240)
Q Consensus 53 -----------~~--------~~-------------------------~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~f~ 88 (240)
.+ .. ......+....+||.|| .+.+....|++.|.
T Consensus 159 ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl-~~~vg~~kL~qvfg 237 (608)
T KOG4212|consen 159 GGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLRSLHIFSPPLHNKVFVANL-DYKVGNKKLKQVFG 237 (608)
T ss_pred CCccccCCCCcccccccccccCccccccccccchhhhcccchhhhhhhccCCCCCccceeeeecc-ccccchHHHHHHhc
Confidence 00 00 01124455678999999 89999999999999
Q ss_pred cCCCeEEEEE-------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecC
Q 026341 89 PYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138 (240)
Q Consensus 89 ~~G~i~~~~~-------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 138 (240)
-.|.|..+.+ .+|+|.|+|..+-+|-+||..|++.-+..++.++.+..-.
T Consensus 238 mAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl~~~~ 294 (608)
T KOG4212|consen 238 MAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRLDRIP 294 (608)
T ss_pred cceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCccccceeeccccc
Confidence 9999998887 3789999999999999999999988777788777775433
No 70
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.28 E-value=3.7e-11 Score=100.42 Aligned_cols=131 Identities=21% Similarity=0.254 Sum_probs=105.9
Q ss_pred eEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC---------CCC------CC-------------------
Q 026341 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG---------RHR------DG------------------- 55 (240)
Q Consensus 10 ~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~---------~~~------~~------------------- 55 (240)
.|.|+|.|.+.|..|...|+|..|+.+...|.|.|++-..- ... .+
T Consensus 190 QALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~ 269 (492)
T KOG1190|consen 190 QALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPA 269 (492)
T ss_pred hhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhcccccccc
Confidence 48999999999999999999999986778899988872110 000 00
Q ss_pred -----C-----------CCCCCCCC--CCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe---CCeEEEEecCHHHHH
Q 026341 56 -----S-----------KSMANQRP--TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---RNFAFVQFETQEEAT 114 (240)
Q Consensus 56 -----~-----------~~~~~~~~--~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~---kg~afV~f~~~~~a~ 114 (240)
. .......+ +.+|.|.||.++.+|.+.|..+|.-||.|..|+|. +..|+|+|.+...|+
T Consensus 270 ~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAq 349 (492)
T KOG1190|consen 270 VHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQ 349 (492)
T ss_pred ccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHH
Confidence 0 00011112 57899999988999999999999999999999983 679999999999999
Q ss_pred HHHHhcCCCcccCcEEEEEEeecCCC
Q 026341 115 KALESTDRSKLVDRVISVEYALKDDS 140 (240)
Q Consensus 115 ~A~~~l~g~~~~g~~l~v~~a~~~~~ 140 (240)
-|++.|+|..|.|+.|.|.+++-..-
T Consensus 350 LA~~hL~g~~l~gk~lrvt~SKH~~v 375 (492)
T KOG1190|consen 350 LAMEHLEGHKLYGKKLRVTLSKHTNV 375 (492)
T ss_pred HHHHHhhcceecCceEEEeeccCccc
Confidence 99999999999999999999986554
No 71
>smart00360 RRM RNA recognition motif.
Probab=99.28 E-value=1.4e-11 Score=79.84 Aligned_cols=63 Identities=37% Similarity=0.646 Sum_probs=57.5
Q ss_pred EeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEE
Q 026341 70 VINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 133 (240)
Q Consensus 70 v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 133 (240)
|+|| |..+++++|+++|.+||.|..+.+. +++|||+|.+.++|..|+..|++..+.|+.|.|+
T Consensus 1 i~~l-~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNL-PPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCC-CcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5788 8899999999999999999999883 4699999999999999999999999999998873
No 72
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.27 E-value=7.8e-11 Score=98.52 Aligned_cols=127 Identities=24% Similarity=0.324 Sum_probs=102.3
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCC-----------------------CCCCCCC-CCC
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHR-----------------------DGSKSMA-NQR 63 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~-----------------------~~~~~~~-~~~ 63 (240)
+--|.|+|.|...|+.|++.|+|..|+ |++|.|.+++...-+.. .+.++.. ..+
T Consensus 335 kd~ALIQmsd~~qAqLA~~hL~g~~l~--gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~P 412 (492)
T KOG1190|consen 335 KDNALIQMSDGQQAQLAMEHLEGHKLY--GKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFP 412 (492)
T ss_pred CcceeeeecchhHHHHHHHHhhcceec--CceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccccCC
Confidence 467999999999999999999999995 99999999985432211 0111222 347
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCCCe-EEEEE-e--CCeEEEEecCHHHHHHHHHhcCCCcccC-cEEEEEEeec
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNV-LHVRI-R--RNFAFVQFETQEEATKALESTDRSKLVD-RVISVEYALK 137 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i-~~~~~-~--kg~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a~~ 137 (240)
|+.+|++.|+ |..+++++|+++|..-|.. ....+ . +.+|++.+++.|+|..|+..||+..+.+ ..|.|.|++.
T Consensus 413 psatlHlsni-p~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 413 PSATLHLSNI-PPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred chhheeeccC-CcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 7899999999 8899999999999988754 44443 2 4699999999999999999999999876 5899999874
No 73
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.26 E-value=4.3e-11 Score=98.27 Aligned_cols=72 Identities=40% Similarity=0.650 Sum_probs=67.6
Q ss_pred CCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEee
Q 026341 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136 (240)
Q Consensus 65 ~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~--------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 136 (240)
..+|||+|| +..+++++|.++|.+||.|..+.+ .+|+|||+|.+.++|..|+..|++..|.|+.|.|.++.
T Consensus 115 ~~~l~v~nL-~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNL-PYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCC-CCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 699999999 899999999999999999988877 36999999999999999999999999999999999976
Q ss_pred c
Q 026341 137 K 137 (240)
Q Consensus 137 ~ 137 (240)
.
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 4
No 74
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.25 E-value=1e-10 Score=98.65 Aligned_cols=72 Identities=26% Similarity=0.380 Sum_probs=65.9
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe---CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEe
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~---kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 135 (240)
...|+|||.|| |+++||+.|++-|..||.|.++.|+ +..+.|.|.++++|+.|+..|+|..++|+.|.|.|.
T Consensus 534 rKa~qIiirNl-P~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 534 RKACQIIIRNL-PFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccEEEEecC-CccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 44688999999 9999999999999999999999984 446689999999999999999999999999999873
No 75
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.23 E-value=1.5e-10 Score=88.72 Aligned_cols=42 Identities=45% Similarity=0.695 Sum_probs=39.5
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEecc
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 46 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~ 46 (240)
.|.+++|||||-|.+..||++|++.|+|.+| +|+.|.|++|.
T Consensus 50 ~Tr~sRgFaFVrf~~k~daedA~damDG~~l--dgRelrVq~ar 91 (256)
T KOG4207|consen 50 YTRQSRGFAFVRFHDKRDAEDALDAMDGAVL--DGRELRVQMAR 91 (256)
T ss_pred ccccccceeEEEeeecchHHHHHHhhcceee--ccceeeehhhh
Confidence 3778899999999999999999999999999 79999999887
No 76
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.20 E-value=9.3e-11 Score=97.06 Aligned_cols=130 Identities=18% Similarity=0.203 Sum_probs=101.4
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccC-CCCCCHHHHHH
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFD-PIRTRERDIKR 85 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~-~~~~~~~~l~~ 85 (240)
.+-.|.|+|+|.+-|+.|+.......+.+.|+...++++..+...... .....++..|.+.=|+ -+.+|.+.|..
T Consensus 66 ~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~i~R~g----~es~~pN~VLl~TIlNp~YpItvDVly~ 141 (494)
T KOG1456|consen 66 HKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQCIERPG----DESATPNKVLLFTILNPQYPITVDVLYT 141 (494)
T ss_pred ccceeeeeeccccchhhheehhccCcccccCchhhcccchhhhhccCC----CCCCCCCeEEEEEeecCccccchhhhhh
Confidence 467899999999999999985545555558999999998654322211 1233455666555443 47899999999
Q ss_pred hhccCCCeEEEEEeC---CeEEEEecCHHHHHHHHHhcCCCcccC--cEEEEEEeecCCC
Q 026341 86 HFEPYGNVLHVRIRR---NFAFVQFETQEEATKALESTDRSKLVD--RVISVEYALKDDS 140 (240)
Q Consensus 86 ~f~~~G~i~~~~~~k---g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~~ 140 (240)
++...|+|..|.|.+ -.|+|||++.+.|++|...|||..|.- ++|+|+||++.+-
T Consensus 142 Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 142 ICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred hcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCccee
Confidence 999999999999864 279999999999999999999998863 8999999997653
No 77
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=7e-10 Score=82.95 Aligned_cols=43 Identities=47% Similarity=0.645 Sum_probs=39.3
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~ 50 (240)
+..|||||||+++.||++|+..|+|..|+ |..|.|+++.....
T Consensus 45 nPPGfAFVEFed~RDA~DAvr~LDG~~~c--G~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 45 NPPGFAFVEFEDPRDAEDAVRYLDGKDIC--GSRIRVELSTGRPR 87 (195)
T ss_pred cCCCceEEeccCcccHHHHHhhcCCcccc--CceEEEEeecCCcc
Confidence 56899999999999999999999999995 99999999996554
No 78
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.18 E-value=8.8e-11 Score=91.35 Aligned_cols=78 Identities=27% Similarity=0.513 Sum_probs=70.2
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHH----hhccCCCeEEEEE-----eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKR----HFEPYGNVLHVRI-----RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 131 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~----~f~~~G~i~~~~~-----~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 131 (240)
...++.+|||.|| ...+..++|+. +|++||+|..|.. ++|.|||.|.+.+.|..|+..|+|..+.|+++.
T Consensus 5 ~~~pn~TlYInnL-nekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 5 SVNPNGTLYINNL-NEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred ccCCCceEeehhc-cccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3455669999999 88899998887 9999999999988 479999999999999999999999999999999
Q ss_pred EEEeecCC
Q 026341 132 VEYALKDD 139 (240)
Q Consensus 132 v~~a~~~~ 139 (240)
|+||+...
T Consensus 84 iqyA~s~s 91 (221)
T KOG4206|consen 84 IQYAKSDS 91 (221)
T ss_pred eecccCcc
Confidence 99998654
No 79
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.15 E-value=1.1e-10 Score=101.07 Aligned_cols=74 Identities=27% Similarity=0.507 Sum_probs=70.2
Q ss_pred CEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeec
Q 026341 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 137 (240)
Q Consensus 66 ~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~--------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 137 (240)
..|||+|+ |+.+++++|..+|+..|.|..+++ ++||||++|.+.++|+.|+..|||.++.|++|+|.|+..
T Consensus 19 ~~v~vgni-p~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNI-PYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCC-CCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 89999999 999999999999999999999988 489999999999999999999999999999999999986
Q ss_pred CCC
Q 026341 138 DDS 140 (240)
Q Consensus 138 ~~~ 140 (240)
...
T Consensus 98 ~~~ 100 (435)
T KOG0108|consen 98 RKN 100 (435)
T ss_pred cch
Confidence 554
No 80
>smart00361 RRM_1 RNA recognition motif.
Probab=99.10 E-value=2.6e-10 Score=74.72 Aligned_cols=53 Identities=25% Similarity=0.523 Sum_probs=47.3
Q ss_pred HHHHHHhhc----cCCCeEEEE-E----------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 80 ERDIKRHFE----PYGNVLHVR-I----------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 80 ~~~l~~~f~----~~G~i~~~~-~----------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
+++|+++|. +||.|..+. | ++|+|||+|.+.++|++|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999884 2 2689999999999999999999999999999976
No 81
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=1.6e-10 Score=100.79 Aligned_cols=130 Identities=22% Similarity=0.363 Sum_probs=103.5
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCC------------CCCCCCCCCCCCCEEEEeccC
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHR------------DGSKSMANQRPTKTLFVINFD 74 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~------------~~~~~~~~~~~~~~l~v~nl~ 74 (240)
.++||||+|.+.++|..|+. +++..+ .|.++++--.......+. .....+......+.|+|++|
T Consensus 222 ~~nfa~ie~~s~~~at~~~~-~~~~~f--~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~l- 297 (500)
T KOG0120|consen 222 EKNFAFIEFRSISEATEAMA-LDGIIF--EGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGL- 297 (500)
T ss_pred cccceeEEecCCCchhhhhc-ccchhh--CCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccC-
Confidence 48999999999999999998 888888 588887764432221111 01112234445678999999
Q ss_pred CCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCCC
Q 026341 75 PIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 140 (240)
Q Consensus 75 ~~~~~~~~l~~~f~~~G~i~~~~~--------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 140 (240)
|..+++.++.+++..||.+....+ .+||||.+|.+......|+..|||..+.+.+|.|+.|-....
T Consensus 298 p~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~ 371 (500)
T KOG0120|consen 298 PLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGAS 371 (500)
T ss_pred cCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccch
Confidence 999999999999999999887666 479999999999999999999999999999999999875443
No 82
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.08 E-value=2.9e-10 Score=101.91 Aligned_cols=76 Identities=26% Similarity=0.508 Sum_probs=70.6
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE--eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCC
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 139 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~--~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 139 (240)
...+||||++| +..++++||.++|+.||+|..|.+ ++++|||.+....+|++|+.+|.+..+.+..|+|.||....
T Consensus 419 V~SrTLwvG~i-~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 419 VCSRTLWVGGI-PKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred Eeeeeeeeccc-cchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 34689999999 999999999999999999999998 58999999999999999999999999999999999997543
No 83
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.9e-10 Score=94.71 Aligned_cols=77 Identities=27% Similarity=0.560 Sum_probs=69.9
Q ss_pred CCCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEeC--------CeEEEEecCHHHHHHHHHhcCCCcccCcEEE
Q 026341 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR--------NFAFVQFETQEEATKALESTDRSKLVDRVIS 131 (240)
Q Consensus 60 ~~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~k--------g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 131 (240)
...+|.++|||..|+| -++.++|.-+|+.||+|..|.|.+ .||||+|++.+++++|.-.|++..|+++.|.
T Consensus 234 d~~PPeNVLFVCKLNP-VTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNP-VTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred ccCCCcceEEEEecCC-cccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 3567889999999955 688899999999999999999953 5999999999999999999999999999999
Q ss_pred EEEeec
Q 026341 132 VEYALK 137 (240)
Q Consensus 132 v~~a~~ 137 (240)
|.|+..
T Consensus 313 VDFSQS 318 (479)
T KOG0415|consen 313 VDFSQS 318 (479)
T ss_pred eehhhh
Confidence 999864
No 84
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=2e-10 Score=90.03 Aligned_cols=74 Identities=30% Similarity=0.575 Sum_probs=69.6
Q ss_pred CEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCCC
Q 026341 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 140 (240)
Q Consensus 66 ~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 140 (240)
..|||++| ++.+.+.+|..+|..||.|..+.+..+|+||+|++..+|..||..||+..|.|..+.|+|++....
T Consensus 2 ~rv~vg~~-~~~~~~~d~E~~f~~yg~~~d~~mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 2 PRVYIGRL-PYRARERDVERFFKGYGKIPDADMKNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred Cceeeccc-CCccchhHHHHHHhhccccccceeecccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 36899999 999999999999999999999999999999999999999999999999999998899999986543
No 85
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.03 E-value=7.9e-10 Score=90.86 Aligned_cols=76 Identities=29% Similarity=0.482 Sum_probs=66.9
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--CCeEEEEecCHHHHHHHHHhc-CCCcccCcEEEEEEeec
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALEST-DRSKLVDRVISVEYALK 137 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--kg~afV~f~~~~~a~~A~~~l-~g~~~~g~~l~v~~a~~ 137 (240)
....-.+|||++| ...+++.+|.++|.+||+|..+.+. +++|||+|.+.+.|+.|...+ +...|+|..|.|.|..+
T Consensus 224 eD~~I~tLyIg~l-~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 224 EDTSIKTLYIGGL-NDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cccceeEEEeccc-ccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 3344689999999 5589999999999999999999884 689999999999999988754 66789999999999987
No 86
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=3.7e-10 Score=93.37 Aligned_cols=70 Identities=31% Similarity=0.528 Sum_probs=65.7
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEE
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~--------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 134 (240)
.-|.|||+.+ .+.+.++.|+..|..||+|+.|.+ .||||||+|+-+|.|+-|++.|||.+++|+.|+|..
T Consensus 112 iMcRvYVGSI-sfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 112 IMCRVYVGSI-SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HhHheeeeee-EEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 3588999999 899999999999999999999998 389999999999999999999999999999999863
No 87
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.99 E-value=9.2e-11 Score=97.56 Aligned_cols=72 Identities=14% Similarity=0.045 Sum_probs=56.9
Q ss_pred CEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe----CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCC
Q 026341 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR----RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 139 (240)
Q Consensus 66 ~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~----kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 139 (240)
.+|+|++| +..+...++.++|..+|+|.+..+. ..+|.|+|........|+. ++|.++.-+...+.+.++..
T Consensus 152 Rt~~v~sl-~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP~k 227 (479)
T KOG4676|consen 152 RTREVQSL-ISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKPHK 227 (479)
T ss_pred hhhhhhcc-hhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCccc
Confidence 56889999 7788889999999999999887773 4588899999999999987 58887776555555555443
No 88
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.96 E-value=9e-10 Score=87.60 Aligned_cols=92 Identities=27% Similarity=0.464 Sum_probs=75.7
Q ss_pred CceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE-------eCCeEEEEecC
Q 026341 37 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFET 109 (240)
Q Consensus 37 g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~-------~kg~afV~f~~ 109 (240)
.++|.|+.+..+... -..++|||+-| .....|+|++.+|..||.|.+|.+ .||+|||.|.+
T Consensus 2 nrpiqvkpadsesrg-----------~~drklfvgml-~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s 69 (371)
T KOG0146|consen 2 NRPIQVKPADSESRG-----------GDDRKLFVGML-NKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSS 69 (371)
T ss_pred CCCccccccccccCC-----------ccchhhhhhhh-cccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEecc
Confidence 456777777654422 13678999999 788999999999999999999998 48999999999
Q ss_pred HHHHHHHHHhcCCCc-ccC--cEEEEEEeecCCC
Q 026341 110 QEEATKALESTDRSK-LVD--RVISVEYALKDDS 140 (240)
Q Consensus 110 ~~~a~~A~~~l~g~~-~~g--~~l~v~~a~~~~~ 140 (240)
..+|+.||..|||.. +-| ..|.|+|+...++
T Consensus 70 ~~eAqaAI~aLHgSqTmpGASSSLVVK~ADTdkE 103 (371)
T KOG0146|consen 70 HAEAQAAINALHGSQTMPGASSSLVVKFADTDKE 103 (371)
T ss_pred chHHHHHHHHhcccccCCCCccceEEEeccchHH
Confidence 999999999999974 444 7889999876554
No 89
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.92 E-value=2.7e-09 Score=79.89 Aligned_cols=46 Identities=28% Similarity=0.408 Sum_probs=41.6
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~ 50 (240)
.|++++|||||+|.+.++|++||+.||+..| +|++|+|+++.....
T Consensus 71 ~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i--~Gr~l~V~~a~~~~~ 116 (144)
T PLN03134 71 ETGRSRGFGFVNFNDEGAATAAISEMDGKEL--NGRHIRVNPANDRPS 116 (144)
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEEeCCcCCC
Confidence 4778899999999999999999999999999 699999999986543
No 90
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.91 E-value=4.7e-09 Score=91.46 Aligned_cols=78 Identities=35% Similarity=0.542 Sum_probs=69.4
Q ss_pred CCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEE
Q 026341 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 133 (240)
Q Consensus 62 ~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 133 (240)
...+..|||.+| ...+...+|+++|++||+|+..+|. ++|+||++.+.++|.+||..||.++|.|+.|.|+
T Consensus 402 s~~gRNlWVSGL-SstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 402 STLGRNLWVSGL-SSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred cccccceeeecc-ccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 345678999999 7678889999999999999988873 5799999999999999999999999999999999
Q ss_pred EeecCCC
Q 026341 134 YALKDDS 140 (240)
Q Consensus 134 ~a~~~~~ 140 (240)
.++....
T Consensus 481 kaKNEp~ 487 (940)
T KOG4661|consen 481 KAKNEPG 487 (940)
T ss_pred ecccCcc
Confidence 9986543
No 91
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.87 E-value=1.5e-08 Score=78.75 Aligned_cols=77 Identities=19% Similarity=0.357 Sum_probs=66.8
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe---------CCeEEEEecCHHHHHHHHHhcCCCccc---CcEEE
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---------RNFAFVQFETQEEATKALESTDRSKLV---DRVIS 131 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~---------kg~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~ 131 (240)
...+|||.+| |.++...+|..+|..|-..+.+.|. +-+|||.|.+..+|++|++.|||..|+ +.+|.
T Consensus 33 ~VRTLFVSGL-P~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 33 AVRTLFVSGL-PNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred ccceeeeccC-CcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 4689999999 9999999999999998766655552 369999999999999999999999886 78999
Q ss_pred EEEeecCCCC
Q 026341 132 VEYALKDDSE 141 (240)
Q Consensus 132 v~~a~~~~~~ 141 (240)
|++|+...+.
T Consensus 112 iElAKSNtK~ 121 (284)
T KOG1457|consen 112 IELAKSNTKR 121 (284)
T ss_pred eeehhcCccc
Confidence 9999876543
No 92
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.84 E-value=4.1e-08 Score=84.83 Aligned_cols=73 Identities=23% Similarity=0.399 Sum_probs=63.6
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEe
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 135 (240)
...+|||.|| |.++++.+|+++|.+||.|+...|. .+||||+|.+.++++.||++ +-..|++++|.|+.-
T Consensus 287 ~~~~i~V~nl-P~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 287 DGLGIFVKNL-PPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred cccceEeecC-CCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 3456999999 9999999999999999999887762 27999999999999999996 577899999999886
Q ss_pred ecC
Q 026341 136 LKD 138 (240)
Q Consensus 136 ~~~ 138 (240)
+..
T Consensus 365 ~~~ 367 (419)
T KOG0116|consen 365 RPG 367 (419)
T ss_pred ccc
Confidence 653
No 93
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.82 E-value=1.6e-08 Score=77.75 Aligned_cols=77 Identities=25% Similarity=0.427 Sum_probs=68.5
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccC-CCeEEEEE--------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPY-GNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 131 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~-G~i~~~~~--------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 131 (240)
.......++|..+ |..+.+.+|...|.+| |.|..+.+ .+|||||+|++++.|+-|.+.||+..|.++-|.
T Consensus 45 ~~~~~g~~~~~~~-p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 45 EQEIEGVVYVDHI-PHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred ccCCccceeeccc-ccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 4455678999999 8899999999999998 67777777 379999999999999999999999999999999
Q ss_pred EEEeecC
Q 026341 132 VEYALKD 138 (240)
Q Consensus 132 v~~a~~~ 138 (240)
|.+..+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9998766
No 94
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.80 E-value=1.1e-08 Score=63.86 Aligned_cols=36 Identities=44% Similarity=0.662 Sum_probs=34.2
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEec
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 45 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a 45 (240)
+++|||+|.+.++|+.|++.|||..| .|++|.|+||
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~~~--~g~~l~V~~a 56 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGRQF--NGRPLKVSYA 56 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSEE--TTEEEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEEC
Confidence 49999999999999999999999999 6999999986
No 95
>smart00361 RRM_1 RNA recognition motif.
Probab=98.79 E-value=8.7e-09 Score=67.44 Aligned_cols=36 Identities=36% Similarity=0.495 Sum_probs=33.8
Q ss_pred CCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEE
Q 026341 5 LHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSV 42 (240)
Q Consensus 5 ~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v 42 (240)
+.++|||||+|.+.++|.+|+..|||..| +|+.|.+
T Consensus 34 ~~~rG~~fV~f~~~~dA~~A~~~l~g~~~--~gr~l~~ 69 (70)
T smart00361 34 NHKRGNVYITFERSEDAARAIVDLNGRYF--DGRTVKA 69 (70)
T ss_pred CCCcEEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEe
Confidence 77899999999999999999999999999 6999876
No 96
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.79 E-value=7e-09 Score=79.70 Aligned_cols=45 Identities=24% Similarity=0.213 Sum_probs=41.5
Q ss_pred cccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCC
Q 026341 2 CISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 48 (240)
Q Consensus 2 ~~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~ 48 (240)
++||++||||||||++++.|+-|-+.||+.+|+ ++.|.|.+-.+.
T Consensus 86 krTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~--e~lL~c~vmppe 130 (214)
T KOG4208|consen 86 KRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM--EHLLECHVMPPE 130 (214)
T ss_pred cccCCcCceEEEEeccHHHHHHHHHHhhhhhhh--hheeeeEEeCch
Confidence 469999999999999999999999999999995 999999988765
No 97
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.76 E-value=4.5e-08 Score=80.18 Aligned_cols=93 Identities=25% Similarity=0.384 Sum_probs=73.1
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccC----CCCCCC---------CCCCCCCCCCCCCEEE
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG----ERGRHR---------DGSKSMANQRPTKTLF 69 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~----~~~~~~---------~~~~~~~~~~~~~~l~ 69 (240)
.++.++|||||+|.++++|..|+..|++..| .|+.|.|.++.. ...... ..............++
T Consensus 152 ~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (306)
T COG0724 152 ETGKSRGFAFVEFESEESAEKAIEELNGKEL--EGRPLRVQKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLY 229 (306)
T ss_pred ccCccCceEEEEecCHHHHHHHHHHcCCCeE--CCceeEeeccccccccccccccccchhhhccccccccccccccceee
Confidence 4788999999999999999999999999999 699999999642 111110 0111223445678899
Q ss_pred EeccCCCCCCHHHHHHhhccCCCeEEEEE
Q 026341 70 VINFDPIRTRERDIKRHFEPYGNVLHVRI 98 (240)
Q Consensus 70 v~nl~~~~~~~~~l~~~f~~~G~i~~~~~ 98 (240)
+.++ +..++..++..+|..+|.+....+
T Consensus 230 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 257 (306)
T COG0724 230 VGNL-PLKTAEEELADLFKSRGDIVRASL 257 (306)
T ss_pred cccc-ccccchhHHHHhccccccceeeec
Confidence 9999 889999999999999999976666
No 98
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.72 E-value=4.6e-08 Score=81.10 Aligned_cols=131 Identities=21% Similarity=0.272 Sum_probs=97.8
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCC-cccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEE-EeccCCCCCCH
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNI-PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF-VINFDPIRTRE 80 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~-~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~-v~nl~~~~~~~ 80 (240)
..+.++|++.|.|+..+.+..|+. +.+. .+ .+..+...+............ ......+..+++ |.+| ++.++.
T Consensus 125 ~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~--~~~~~~~dl~~~~~~~~~n~~-~~~~~~~s~~~~~~~~~-~f~~~~ 199 (285)
T KOG4210|consen 125 DSLSSKGGLSVHFAGKSQFFAALE-ESGSKVL--DGNKGEKDLNTRRGLRPKNKL-SRLSSGPSDTIFFVGEL-DFSLTR 199 (285)
T ss_pred cccccccceeeccccHHHHHHHHH-hhhcccc--ccccccCcccccccccccchh-cccccCccccceeeccc-ccccch
Confidence 356679999999999999999998 4443 44 355555444443321111111 112233445555 9999 999999
Q ss_pred HHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCC
Q 026341 81 RDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 139 (240)
Q Consensus 81 ~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 139 (240)
++|+.+|..+|.|..+.++ +++|+|.|.+...+..|+.. +...+.+.++.|....+..
T Consensus 200 d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 200 DDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred HHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCc
Confidence 9999999999999999884 68999999999999999987 8889999999998877654
No 99
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.69 E-value=8.4e-08 Score=77.03 Aligned_cols=75 Identities=21% Similarity=0.348 Sum_probs=67.4
Q ss_pred CCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE-------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeec
Q 026341 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 137 (240)
Q Consensus 65 ~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~-------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 137 (240)
...|+|.|| ++.++++||+++|..||.+..+.| ..|.|-|.|...++|..||+.+||..++|..+.++....
T Consensus 83 ~~~v~v~NL-~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNL-PYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecC-CcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 478999999 999999999999999998887777 368999999999999999999999999999999988765
Q ss_pred CCC
Q 026341 138 DDS 140 (240)
Q Consensus 138 ~~~ 140 (240)
...
T Consensus 162 ~~~ 164 (243)
T KOG0533|consen 162 PSQ 164 (243)
T ss_pred ccc
Confidence 443
No 100
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.66 E-value=8.9e-09 Score=79.75 Aligned_cols=76 Identities=21% Similarity=0.204 Sum_probs=67.6
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEeC------CeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR------NFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~k------g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 134 (240)
..+...+|||+|+ ...++++.|.++|-+.|+|..|.|++ .||||+|.++....-|++.|||..+.+..|.|.+
T Consensus 5 aae~drtl~v~n~-~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 5 AAEMDRTLLVQNM-YSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred CcchhhHHHHHhh-hhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhccc
Confidence 3445689999999 78999999999999999999999963 3999999999999999999999999999998887
Q ss_pred eec
Q 026341 135 ALK 137 (240)
Q Consensus 135 a~~ 137 (240)
-..
T Consensus 84 r~G 86 (267)
T KOG4454|consen 84 RCG 86 (267)
T ss_pred ccC
Confidence 543
No 101
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.58 E-value=3.9e-08 Score=82.00 Aligned_cols=128 Identities=21% Similarity=0.232 Sum_probs=88.3
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC--------------CCC----CC---CCC-CCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER--------------GRH----RD---GSK-SMAN 61 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~--------------~~~----~~---~~~-~~~~ 61 (240)
.++..|-|||.|..+++|+.|+.+ |...| |+. +|+...... -.. .. ... ....
T Consensus 202 dgrpTGdAFvlfa~ee~aq~aL~k-hrq~i---GqR-YIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~ 276 (508)
T KOG1365|consen 202 DGRPTGDAFVLFACEEDAQFALRK-HRQNI---GQR-YIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPP 276 (508)
T ss_pred CCCcccceEEEecCHHHHHHHHHH-HHHHH---hHH-HHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCC
Confidence 567789999999999999999974 33333 221 222211000 000 00 000 1112
Q ss_pred CCCCCEEEEeccCCCCCCHHHHHHhhccCC-CeEE--EEE-------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEE
Q 026341 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYG-NVLH--VRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 131 (240)
Q Consensus 62 ~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G-~i~~--~~~-------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 131 (240)
.....+|-+.+| |+..+.++|.++|..|. .|.. |.+ +.|-|||+|.+++.|..|....|++.+..+.|.
T Consensus 277 ~~~kdcvRLRGL-Py~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiE 355 (508)
T KOG1365|consen 277 TRSKDCVRLRGL-PYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIE 355 (508)
T ss_pred CCCCCeeEecCC-ChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEE
Confidence 233678999999 99999999999999886 3433 444 468999999999999999999898888888888
Q ss_pred EEEeec
Q 026341 132 VEYALK 137 (240)
Q Consensus 132 v~~a~~ 137 (240)
|--+..
T Consensus 356 vfp~S~ 361 (508)
T KOG1365|consen 356 VFPCSV 361 (508)
T ss_pred EeeccH
Confidence 876643
No 102
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=5.9e-08 Score=75.31 Aligned_cols=47 Identities=34% Similarity=0.482 Sum_probs=42.8
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRH 52 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~ 52 (240)
+.+++|||||+|+..|||..||..||+.+|+ |+.|.|++|.+.+...
T Consensus 48 sqkHRgFgFVefe~aEDAaaAiDNMnesEL~--GrtirVN~AkP~kike 94 (298)
T KOG0111|consen 48 SQKHRGFGFVEFEEAEDAAAAIDNMNESELF--GRTIRVNLAKPEKIKE 94 (298)
T ss_pred cccccceeEEEeeccchhHHHhhcCchhhhc--ceeEEEeecCCccccC
Confidence 5678999999999999999999999999996 9999999999876543
No 103
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.56 E-value=5.2e-08 Score=84.89 Aligned_cols=70 Identities=27% Similarity=0.508 Sum_probs=64.2
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE---eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 131 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~---~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 131 (240)
...+..+|+|-|| |..+++++|..+|+.||+|..|.. ..+.+||+|.+..+|+.|+++|++.+|.|+.|+
T Consensus 71 ~~~~~~~L~v~nl-~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNL-PRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccCccceEEEEec-CCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3456789999999 889999999999999999999776 479999999999999999999999999998887
No 104
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.54 E-value=5.3e-07 Score=62.29 Aligned_cols=72 Identities=18% Similarity=0.313 Sum_probs=60.4
Q ss_pred CEEEEeccCCCCCCHHHHHHhhccC--CCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCccc----CcEEE
Q 026341 66 KTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLV----DRVIS 131 (240)
Q Consensus 66 ~~l~v~nl~~~~~~~~~l~~~f~~~--G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 131 (240)
+||.|.|| |...+.++|.+++... |....+.++ .|||||.|.+++.|....+.++|..+. .+.+.
T Consensus 2 TTvMirNI-Pn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNI-PNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecC-CCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 68999999 9999999999988753 555555553 699999999999999999999999886 47888
Q ss_pred EEEeecC
Q 026341 132 VEYALKD 138 (240)
Q Consensus 132 v~~a~~~ 138 (240)
|.||+-+
T Consensus 81 i~yAriQ 87 (97)
T PF04059_consen 81 ISYARIQ 87 (97)
T ss_pred EehhHhh
Confidence 8888754
No 105
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.54 E-value=1.8e-07 Score=74.18 Aligned_cols=122 Identities=11% Similarity=0.164 Sum_probs=90.8
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHHHH
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 85 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~ 85 (240)
...++||+.|.....-.++-..-+++.+ +-.+|++.-....... ...........||++.| ...++++.|-.
T Consensus 138 ~~~~~~~~~~k~s~a~~k~~~~~~~Kki--~~~~VR~a~gtswedP-----sl~ew~~~DfRIfcgdl-gNevnd~vl~r 209 (290)
T KOG0226|consen 138 PIRPEAFESFKASDALLKAETEKEKKKI--GKPPVRLAAGTSWEDP-----SLAEWDEDDFRIFCGDL-GNEVNDDVLAR 209 (290)
T ss_pred ccCcccccCcchhhhhhhhccccccccc--cCcceeeccccccCCc-----ccccCccccceeecccc-cccccHHHHHH
Confidence 4579999999988877777777777777 3444444333222211 11123344678999999 77899999999
Q ss_pred hhccCCCeEEEEE--------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEe
Q 026341 86 HFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135 (240)
Q Consensus 86 ~f~~~G~i~~~~~--------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 135 (240)
.|.+|-.....++ .+||+||.|.+.+++..|+..|+|..++.++|++.-+
T Consensus 210 af~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 210 AFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred HHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 9999875555544 4799999999999999999999999999998877544
No 106
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.53 E-value=3e-07 Score=64.92 Aligned_cols=71 Identities=30% Similarity=0.382 Sum_probs=45.8
Q ss_pred CCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEeCC--eEEEEecCHHHHHHHHHhcC-----CCcccCcEEEEEEee
Q 026341 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--FAFVQFETQEEATKALESTD-----RSKLVDRVISVEYAL 136 (240)
Q Consensus 65 ~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~kg--~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~v~~a~ 136 (240)
++.|+|.++ ...++.++|+++|.+||.|.+|.+.+| .|||-|.+.+.|+.|+..+. +..|.+..+.++...
T Consensus 1 G~il~~~g~-~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vLe 78 (105)
T PF08777_consen 1 GCILKFSGL-GEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVLE 78 (105)
T ss_dssp --EEEEEE---SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE---
T ss_pred CeEEEEecC-CCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEECC
Confidence 367899999 778999999999999999999999876 89999999999999998763 346778777777654
No 107
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.53 E-value=3.4e-07 Score=75.53 Aligned_cols=78 Identities=15% Similarity=0.269 Sum_probs=67.8
Q ss_pred CCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEE--------EEE-------eCCeEEEEecCHHHHHHHHHhcCCCccc
Q 026341 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH--------VRI-------RRNFAFVQFETQEEATKALESTDRSKLV 126 (240)
Q Consensus 62 ~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~--------~~~-------~kg~afV~f~~~~~a~~A~~~l~g~~~~ 126 (240)
...++.|||.|| |.++|.+++.++|.++|.|.. |.| .+|-|++.|-..+++.-|++.|++..|.
T Consensus 131 ~~~Nt~VYVsgL-P~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGL-PLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCC-CCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 344677999999 999999999999999997753 333 4799999999999999999999999999
Q ss_pred CcEEEEEEeecCCC
Q 026341 127 DRVISVEYALKDDS 140 (240)
Q Consensus 127 g~~l~v~~a~~~~~ 140 (240)
|+.|.|+.|+-+..
T Consensus 210 g~~~rVerAkfq~K 223 (382)
T KOG1548|consen 210 GKKLRVERAKFQMK 223 (382)
T ss_pred CcEEEEehhhhhhc
Confidence 99999999975543
No 108
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.53 E-value=8.6e-07 Score=71.26 Aligned_cols=76 Identities=24% Similarity=0.379 Sum_probs=67.9
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~--------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
.......+||+|+ .+.++.+++..+|+.||.|..+.| +++|+||+|.+.+.++.|+. ||+..|.|..+.|
T Consensus 97 ~~~d~~sv~v~nv-d~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 97 KEVDAPSVWVGNV-DFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hccCCceEEEecc-ccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 3445788999999 888999999999999999987776 37899999999999999999 9999999999999
Q ss_pred EEeecC
Q 026341 133 EYALKD 138 (240)
Q Consensus 133 ~~a~~~ 138 (240)
.+..-.
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 998765
No 109
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.51 E-value=4.2e-07 Score=60.06 Aligned_cols=70 Identities=26% Similarity=0.407 Sum_probs=48.6
Q ss_pred CEEEEeccCCCCCCHHH----HHHhhccCC-CeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecC
Q 026341 66 KTLFVINFDPIRTRERD----IKRHFEPYG-NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138 (240)
Q Consensus 66 ~~l~v~nl~~~~~~~~~----l~~~f~~~G-~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 138 (240)
..|+|.|| |.+.+... |++++..+| .|..| ..+.|+|.|.+++.|..|.+.|+|..+.|..|.|.|....
T Consensus 3 s~L~V~NL-P~~~d~~~I~~RL~qLsdNCGGkVl~v--~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 3 SLLYVSNL-PTNKDPSSIKNRLRQLSDNCGGKVLSV--SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp EEEEEES---TTS-HHHHHHHHHHHHHTTT--EEE----TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred cEEEEecC-CCCCCHHHHHHHHHHHhhccCCEEEEE--eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 46999999 87777655 566666776 66665 6899999999999999999999999999999999998544
No 110
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.51 E-value=1.8e-07 Score=83.65 Aligned_cols=75 Identities=24% Similarity=0.383 Sum_probs=68.4
Q ss_pred CCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe-----------CCeEEEEecCHHHHHHHHHhcCCCcccCcEE
Q 026341 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-----------RNFAFVQFETQEEATKALESTDRSKLVDRVI 130 (240)
Q Consensus 62 ~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~-----------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l 130 (240)
.+.++.|||+|| +..++++.|...|..||+|..+.|+ ..++||.|-+..+|++|++.|+|..+.+..+
T Consensus 171 DP~TTNlyv~Nl-npsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGNL-NPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCcccceeeecC-CccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 345688999999 6689999999999999999999984 4799999999999999999999999999999
Q ss_pred EEEEeec
Q 026341 131 SVEYALK 137 (240)
Q Consensus 131 ~v~~a~~ 137 (240)
++.|++.
T Consensus 250 K~gWgk~ 256 (877)
T KOG0151|consen 250 KLGWGKA 256 (877)
T ss_pred eeccccc
Confidence 9999864
No 111
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.48 E-value=1.5e-07 Score=78.55 Aligned_cols=75 Identities=25% Similarity=0.443 Sum_probs=66.4
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEeC--------CeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEe
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR--------NFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~k--------g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 135 (240)
..++|||++| .+.++++.|++.|.+||+|..|.+++ +|+||+|++.+...++|.. ....|+|+.|.+.-|
T Consensus 5 ~~~KlfiGgi-sw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGL-SWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCc-CccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceec
Confidence 4688999999 99999999999999999999999964 9999999999998888863 556889999999888
Q ss_pred ecCCC
Q 026341 136 LKDDS 140 (240)
Q Consensus 136 ~~~~~ 140 (240)
.+...
T Consensus 83 v~r~~ 87 (311)
T KOG4205|consen 83 VSRED 87 (311)
T ss_pred cCccc
Confidence 87654
No 112
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.46 E-value=1.3e-07 Score=67.87 Aligned_cols=45 Identities=24% Similarity=0.361 Sum_probs=41.0
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
+||-.||||+|+|++.++|++||..|||..|+ |++|.|.|+..+.
T Consensus 109 RtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll--~q~v~VDw~Fv~g 153 (170)
T KOG0130|consen 109 RTGYVKGYALVEYETLKEAQAAIDALNGAELL--GQNVSVDWCFVKG 153 (170)
T ss_pred ccccccceeeeehHhHHHHHHHHHhccchhhh--CCceeEEEEEecC
Confidence 47788999999999999999999999999995 9999999998544
No 113
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.43 E-value=3.1e-07 Score=59.52 Aligned_cols=36 Identities=33% Similarity=0.562 Sum_probs=32.4
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEE
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLS 41 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~ 41 (240)
++..+|||||+|.+.++|++|++.|||..| +|++|+
T Consensus 35 ~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~--~~~~ir 70 (70)
T PF00076_consen 35 SGKSKGYAFVEFESEEDAEKALEELNGKKI--NGRKIR 70 (70)
T ss_dssp TSSEEEEEEEEESSHHHHHHHHHHHTTEEE--TTEEEE
T ss_pred cccccceEEEEEcCHHHHHHHHHHcCCCEE--CccCcC
Confidence 466799999999999999999999999999 688774
No 114
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.42 E-value=1.4e-07 Score=85.97 Aligned_cols=108 Identities=19% Similarity=0.250 Sum_probs=91.3
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHH
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERD 82 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~ 82 (240)
++++.+|+|+|+|..+++|.+||....++.+ | ...|+|.|+ |+..|.++
T Consensus 704 n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~---g---------------------------K~~v~i~g~-pf~gt~e~ 752 (881)
T KOG0128|consen 704 NEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF---G---------------------------KISVAISGP-PFQGTKEE 752 (881)
T ss_pred hccccccceeeEeecCCchhhhhhhhhhhhh---h---------------------------hhhhheeCC-CCCCchHH
Confidence 4667799999999999999999995555555 3 235789999 99999999
Q ss_pred HHHhhccCCCeEEEEE-------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCCCC
Q 026341 83 IKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSE 141 (240)
Q Consensus 83 l~~~f~~~G~i~~~~~-------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 141 (240)
|+.++..+|.++.+.+ ++|.|+|.|.++.+|..++..++...+.-..+.|+.+.+...+
T Consensus 753 ~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~~K 818 (881)
T KOG0128|consen 753 LKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPERDK 818 (881)
T ss_pred HHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCcccc
Confidence 9999999999988866 5799999999999999999999988888888888886664433
No 115
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.42 E-value=7e-08 Score=83.90 Aligned_cols=45 Identities=33% Similarity=0.571 Sum_probs=41.8
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
.||+.+||||++|.++++|+.|++.|||.++ .|++|+|.|+....
T Consensus 55 ~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~--~gr~l~v~~~~~~~ 99 (435)
T KOG0108|consen 55 ETGKPKGFGFCEFTDEETAERAIRNLNGAEF--NGRKLRVNYASNRK 99 (435)
T ss_pred cCCCcCceeeEecCchhhHHHHHHhcCCccc--CCceEEeecccccc
Confidence 4899999999999999999999999999999 69999999998554
No 116
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.42 E-value=1.5e-08 Score=85.45 Aligned_cols=117 Identities=21% Similarity=0.303 Sum_probs=100.3
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHHHHhh
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHF 87 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~f 87 (240)
.|||||.+.+...|.+|++.|+|+.-+ .|+.+.|+++.+++.. ...+.|.|+ |....|+.|..++
T Consensus 37 ~gyafvd~pdq~wa~kaie~~sgk~el-qGkr~e~~~sv~kkqr-------------srk~Qirni-ppql~wevld~Ll 101 (584)
T KOG2193|consen 37 SGYAFVDCPDQQWANKAIETLSGKVEL-QGKRQEVEHSVPKKQR-------------SRKIQIRNI-PPQLQWEVLDSLL 101 (584)
T ss_pred cceeeccCCchhhhhhhHHhhchhhhh-cCceeeccchhhHHHH-------------hhhhhHhcC-CHHHHHHHHHHHH
Confidence 699999999999999999999998654 7999999999987654 455889999 7788899999999
Q ss_pred ccCCCeEEEEEe-----CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCC
Q 026341 88 EPYGNVLHVRIR-----RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 139 (240)
Q Consensus 88 ~~~G~i~~~~~~-----kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 139 (240)
.+||.+..|... ....-|+|.+.+.+..||..|+|..+.+..++|.|--.+.
T Consensus 102 ~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPdeq 158 (584)
T KOG2193|consen 102 AQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDEQ 158 (584)
T ss_pred hccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchhh
Confidence 999999888763 2344578889999999999999999999999998876543
No 117
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.40 E-value=2.5e-07 Score=75.88 Aligned_cols=44 Identities=27% Similarity=0.333 Sum_probs=39.6
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 48 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~ 48 (240)
+.--+||||||+|++++||++|-++|||..| .|++|.|+.+...
T Consensus 131 NERGSKGFGFVTmen~~dadRARa~LHgt~V--EGRkIEVn~ATar 174 (376)
T KOG0125|consen 131 NERGSKGFGFVTMENPADADRARAELHGTVV--EGRKIEVNNATAR 174 (376)
T ss_pred ccCCCCccceEEecChhhHHHHHHHhhccee--eceEEEEeccchh
Confidence 3344799999999999999999999999999 7999999999854
No 118
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=3.5e-06 Score=73.18 Aligned_cols=120 Identities=19% Similarity=0.307 Sum_probs=83.8
Q ss_pred cc---eEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCC-C-----------CCCCCCCCCCCCEEEEec
Q 026341 8 AG---FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHR-D-----------GSKSMANQRPTKTLFVIN 72 (240)
Q Consensus 8 kG---~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~-~-----------~~~~~~~~~~~~~l~v~n 72 (240)
+| |+|+.|+++..+..-|.+..- ...++.++.+.+..+... + -........|..|||||+
T Consensus 303 kGs~~YvflvFe~E~sV~~Ll~aC~~-----~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGg 377 (520)
T KOG0129|consen 303 KGSYGYVFLVFEDERSVQSLLSACSE-----GEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGG 377 (520)
T ss_pred CCcccEEEEEecchHHHHHHHHHHhh-----cccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecC
Confidence 66 999999999988876654332 133444444443222210 0 011334667899999999
Q ss_pred cCCCCCCHHHHHHhhc-cCCCeEEEEE--------eCCeEEEEecCHHHHHHHHHh----cCCCcccCcEEEEEE
Q 026341 73 FDPIRTRERDIKRHFE-PYGNVLHVRI--------RRNFAFVQFETQEEATKALES----TDRSKLVDRVISVEY 134 (240)
Q Consensus 73 l~~~~~~~~~l~~~f~-~~G~i~~~~~--------~kg~afV~f~~~~~a~~A~~~----l~g~~~~g~~l~v~~ 134 (240)
| |..++.++|-.+|+ -||.|..+-| ++|-|-|+|.+..+-.+||.+ |+..+|.- .|.|..
T Consensus 378 v-prpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~K-RVEIkP 450 (520)
T KOG0129|consen 378 L-PRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDIDK-RVEIKP 450 (520)
T ss_pred C-CCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccce-eeeecc
Confidence 9 99999999999998 7999998877 689999999999999999874 34444432 444443
No 119
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.33 E-value=3.8e-07 Score=83.53 Aligned_cols=117 Identities=18% Similarity=0.265 Sum_probs=97.6
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHHHHhh
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHF 87 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~f 87 (240)
--||||.|.+...|-.|...+.+..|. .-.+.+.+... ...+++.++|++| ..++....|...|
T Consensus 413 sa~~f~~~~n~dmtp~ak~e~s~~~I~--~g~~r~glG~~-------------kst~ttr~~sggl-g~w~p~~~l~r~f 476 (975)
T KOG0112|consen 413 SAYAFVSLLNTDMTPSAKFEESGPLIG--NGTHRIGLGQP-------------KSTPTTRLQSGGL-GPWSPVSRLNREF 476 (975)
T ss_pred cchhhhhhhccccCcccchhhcCCccc--cCccccccccc-------------ccccceeeccCCC-CCCChHHHHHHHh
Confidence 569999999999999999999999884 22344444332 2345788999999 6678899999999
Q ss_pred ccCCCeEEEEEeCC--eEEEEecCHHHHHHHHHhcCCCcccC--cEEEEEEeecCCC
Q 026341 88 EPYGNVLHVRIRRN--FAFVQFETQEEATKALESTDRSKLVD--RVISVEYALKDDS 140 (240)
Q Consensus 88 ~~~G~i~~~~~~kg--~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~~ 140 (240)
..||.|..|.+-.| ||+|.|++...|+.|+..|-|..|.+ +.|.|.|+.....
T Consensus 477 d~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 477 DRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred hccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCCC
Confidence 99999999999654 99999999999999999999999987 7899999876544
No 120
>smart00360 RRM RNA recognition motif.
Probab=98.29 E-value=1.3e-06 Score=56.03 Aligned_cols=38 Identities=39% Similarity=0.607 Sum_probs=33.7
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEE
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVE 43 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~ 43 (240)
++.++|||||+|.+.++|..|+..|++..| +|+.|.|+
T Consensus 34 ~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~--~~~~~~v~ 71 (71)
T smart00360 34 TGKSKGFAFVEFESEEDAEKALEALNGKEL--DGRPLKVK 71 (71)
T ss_pred CCCCCceEEEEeCCHHHHHHHHHHcCCCee--CCcEEEeC
Confidence 466789999999999999999999999888 68888773
No 121
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.19 E-value=2.5e-06 Score=55.46 Aligned_cols=35 Identities=37% Similarity=0.537 Sum_probs=31.4
Q ss_pred CCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEE
Q 026341 5 LHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLS 41 (240)
Q Consensus 5 ~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~ 41 (240)
+..+|+|||+|.++++|..|+..+++..| +|+.|.
T Consensus 36 ~~~~~~a~v~f~~~~~a~~al~~~~~~~~--~g~~l~ 70 (70)
T PF14259_consen 36 GQSRGFAFVEFSSEEDAKRALELLNGKEI--DGRKLR 70 (70)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHTTEEE--TTEEEE
T ss_pred cccCCEEEEEeCCHHHHHHHHHHCCCcEE--CCEEcC
Confidence 56799999999999999999999998988 688774
No 122
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.18 E-value=7.2e-06 Score=70.83 Aligned_cols=74 Identities=26% Similarity=0.362 Sum_probs=61.5
Q ss_pred CCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEe
Q 026341 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135 (240)
Q Consensus 62 ~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 135 (240)
......|.+.+| ||.+|++||.+||+.++ |..+.++ .|-|||+|++++++++|++ .|...+..+-|.|-.+
T Consensus 7 ~~~~~~vr~rGL-Pwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 7 GSTAFEVRLRGL-PWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred CCcceEEEecCC-CccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 334567889999 99999999999999985 6666664 5799999999999999998 4777888888888777
Q ss_pred ecC
Q 026341 136 LKD 138 (240)
Q Consensus 136 ~~~ 138 (240)
...
T Consensus 84 ~~~ 86 (510)
T KOG4211|consen 84 GGA 86 (510)
T ss_pred CCc
Confidence 543
No 123
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.16 E-value=2.9e-06 Score=68.86 Aligned_cols=43 Identities=35% Similarity=0.630 Sum_probs=39.7
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 47 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~ 47 (240)
.|++++|||||+|+++.+...|.+..+|++| +|+.|.|.+-..
T Consensus 138 vTgkskGYAFIeye~erdm~~AYK~adG~~I--dgrri~VDvERg 180 (335)
T KOG0113|consen 138 VTGKSKGYAFIEYEHERDMKAAYKDADGIKI--DGRRILVDVERG 180 (335)
T ss_pred ccCCccceEEEEeccHHHHHHHHHhccCcee--cCcEEEEEeccc
Confidence 4899999999999999999999999999999 799999987664
No 124
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.13 E-value=6.6e-07 Score=67.62 Aligned_cols=46 Identities=26% Similarity=0.395 Sum_probs=41.6
Q ss_pred cccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 2 CISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 2 ~~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
++||+++||||+.|+|..+...||..|||..| .|+.|.|.......
T Consensus 71 k~TGKSKGFaFLcYEDQRSTILAVDN~NGiki--~gRtirVDHv~~Yk 116 (219)
T KOG0126|consen 71 KKTGKSKGFAFLCYEDQRSTILAVDNLNGIKI--LGRTIRVDHVSNYK 116 (219)
T ss_pred CCCCcccceEEEEecCccceEEEEeccCCcee--cceeEEeeeccccc
Confidence 46999999999999999999999999999999 59999999776544
No 125
>smart00362 RRM_2 RNA recognition motif.
Probab=98.09 E-value=5.5e-06 Score=53.21 Aligned_cols=37 Identities=43% Similarity=0.611 Sum_probs=32.5
Q ss_pred CCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEE
Q 026341 5 LHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVE 43 (240)
Q Consensus 5 ~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~ 43 (240)
+.++|+|||+|.+.++|++|+..|++..| .|+.|.|.
T Consensus 36 ~~~~~~~~v~f~~~~~a~~a~~~~~~~~~--~~~~i~v~ 72 (72)
T smart00362 36 GKSKGFAFVEFESEEDAEKAIEALNGTKL--GGRPLRVE 72 (72)
T ss_pred CCCCceEEEEeCCHHHHHHHHHHhCCcEE--CCEEEeeC
Confidence 34579999999999999999999999888 68888763
No 126
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.04 E-value=5.5e-06 Score=59.19 Aligned_cols=42 Identities=31% Similarity=0.585 Sum_probs=37.6
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
..=|||||+|...++|+.||..++|..| +.++|.|.|...-.
T Consensus 76 tpCGFCFVeyy~~~dA~~AlryisgtrL--ddr~ir~D~D~GF~ 117 (153)
T KOG0121|consen 76 TPCGFCFVEYYSRDDAEDALRYISGTRL--DDRPIRIDWDAGFV 117 (153)
T ss_pred CccceEEEEEecchhHHHHHHHhccCcc--cccceeeeccccch
Confidence 3469999999999999999999999999 79999999887544
No 127
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.94 E-value=1.5e-05 Score=66.37 Aligned_cols=79 Identities=24% Similarity=0.309 Sum_probs=67.9
Q ss_pred CCCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEE--------EEE--------eCCeEEEEecCHHHHHHHHHhcCCC
Q 026341 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH--------VRI--------RRNFAFVQFETQEEATKALESTDRS 123 (240)
Q Consensus 60 ~~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~--------~~~--------~kg~afV~f~~~~~a~~A~~~l~g~ 123 (240)
+......+|||.+| +..+++++|.++|.++|.|.. |+| +|+-|.|.|++...|+.||..++++
T Consensus 61 ~~~s~~~ti~v~g~-~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agk 139 (351)
T KOG1995|consen 61 ADKSDNETIFVWGC-PDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGK 139 (351)
T ss_pred ccccccccceeecc-CccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccc
Confidence 34556789999999 889999999999999987743 222 4789999999999999999999999
Q ss_pred cccCcEEEEEEeecCC
Q 026341 124 KLVDRVISVEYALKDD 139 (240)
Q Consensus 124 ~~~g~~l~v~~a~~~~ 139 (240)
.+.|.+|+|.+|....
T Consensus 140 df~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 140 DFCGNTIKVSLAERRT 155 (351)
T ss_pred cccCCCchhhhhhhcc
Confidence 9999999999987654
No 128
>PLN03120 nucleic acid binding protein; Provisional
Probab=97.93 E-value=1.5e-05 Score=64.52 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=36.2
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
.+|||||+|.++++|+.||. |||..| .|+.|.|.++....
T Consensus 42 ~~GfAFVtF~d~eaAe~All-LnG~~l--~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 42 RSQIAYVTFKDPQGAETALL-LSGATI--VDQSVTITPAEDYQ 81 (260)
T ss_pred CCCEEEEEeCcHHHHHHHHH-hcCCee--CCceEEEEeccCCC
Confidence 57999999999999999996 999999 69999999987543
No 129
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.92 E-value=0.00014 Score=61.21 Aligned_cols=119 Identities=27% Similarity=0.296 Sum_probs=79.0
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCC--CCCCC---CCCCEEEEeccCCCCCCHH
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSK--SMANQ---RPTKTLFVINFDPIRTRER 81 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~--~~~~~---~~~~~l~v~nl~~~~~~~~ 81 (240)
-.|.|.|.|.|+|.-+.|++ -+.+.+ +++.|.|--+.......-.+.. ..... ...-.|-+.+| |+++++.
T Consensus 101 Rnge~lvrf~d~e~Rdlalk-Rhkhh~--g~ryievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGL-Pfdat~~ 176 (508)
T KOG1365|consen 101 RNGEALVRFVDPEGRDLALK-RHKHHM--GTRYIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGL-PFDATAL 176 (508)
T ss_pred cccceEEEecCchhhhhhhH-hhhhhc--cCCceeeeccCchhheEecCCccccCCCCCCcccceEEEecCC-CCCcchH
Confidence 46899999999999888987 444444 5788888766655432211111 11111 11334567899 9999999
Q ss_pred HHHHhhccC-----C--CeEEEEE----eCCeEEEEecCHHHHHHHHHhcCCCcccCcEE
Q 026341 82 DIKRHFEPY-----G--NVLHVRI----RRNFAFVQFETQEEATKALESTDRSKLVDRVI 130 (240)
Q Consensus 82 ~l~~~f~~~-----G--~i~~~~~----~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l 130 (240)
++.++|.+- | .|..|.- +.|-|||.|..+++|+.|+.. |...|+-+-|
T Consensus 177 dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYI 235 (508)
T KOG1365|consen 177 DVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYI 235 (508)
T ss_pred HHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHH
Confidence 999999632 2 2333333 368999999999999999985 4444444433
No 130
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=97.90 E-value=7.8e-06 Score=64.38 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=36.2
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 47 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~ 47 (240)
.|+++||||||+|.|.++|..|++..|-++ +|++..|++|.-
T Consensus 49 ~t~rskGyGfVTf~d~~aa~rAc~dp~piI---dGR~aNcnlA~l 90 (247)
T KOG0149|consen 49 NTGRSKGYGFVTFRDAEAATRACKDPNPII---DGRKANCNLASL 90 (247)
T ss_pred CCccccceeeEEeecHHHHHHHhcCCCCcc---cccccccchhhh
Confidence 589999999999999999999998655543 799999998874
No 131
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=97.90 E-value=2.4e-05 Score=50.40 Aligned_cols=37 Identities=43% Similarity=0.697 Sum_probs=33.3
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEe
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW 44 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~ 44 (240)
..+|+|||+|.+.++|..|+..+++..+ .|+.|.|.+
T Consensus 38 ~~~~~~~v~f~s~~~a~~a~~~~~~~~~--~~~~~~v~~ 74 (74)
T cd00590 38 KSKGFAFVEFEDEEDAEKALEALNGKEL--GGRPLRVEF 74 (74)
T ss_pred CcceEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEeC
Confidence 4589999999999999999999999988 699998864
No 132
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.90 E-value=1.6e-05 Score=70.21 Aligned_cols=78 Identities=15% Similarity=0.235 Sum_probs=66.6
Q ss_pred CCCCCCCCEEEEeccCCCCCCHHHHHHhhcc-CCCeEEEEE--eCCeEEEEecCHHHHHHHHHhcCCCcc---cCcEEEE
Q 026341 59 MANQRPTKTLFVINFDPIRTRERDIKRHFEP-YGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKL---VDRVISV 132 (240)
Q Consensus 59 ~~~~~~~~~l~v~nl~~~~~~~~~l~~~f~~-~G~i~~~~~--~kg~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v 132 (240)
+....+.+.|+|.|| -..+|..+|+.++.. .|.|...+| +|..|||.|.+.++|.+.+.+|||..+ +++.|.|
T Consensus 438 PsR~~~SnvlhI~nL-vRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNL-VRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCCCCccceEeeecc-cccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 345667899999999 778999999999995 557777776 689999999999999999999999876 4688999
Q ss_pred EEeec
Q 026341 133 EYALK 137 (240)
Q Consensus 133 ~~a~~ 137 (240)
.|+..
T Consensus 517 df~~~ 521 (718)
T KOG2416|consen 517 DFVRA 521 (718)
T ss_pred eecch
Confidence 99864
No 133
>PLN03213 repressor of silencing 3; Provisional
Probab=97.87 E-value=1.7e-05 Score=68.68 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=34.7
Q ss_pred cceEEEEeCCh--hHHHHHHHhhCCCcccCCCceEEEEecc
Q 026341 8 AGFAFVYFEDD--RDAADAIRGLDNIPFGYDRRRLSVEWAR 46 (240)
Q Consensus 8 kG~aFV~F~~~--~~A~~A~~~l~g~~~~~~g~~l~v~~a~ 46 (240)
+|||||+|.+. .++.+||..|||..+ .|+.|+|+.|+
T Consensus 48 RGFAFVEMssdddaEeeKAISaLNGAEW--KGR~LKVNKAK 86 (759)
T PLN03213 48 RSFAYIDFSPSSTNSLTKLFSTYNGCVW--KGGRLRLEKAK 86 (759)
T ss_pred CceEEEEecCCcHHHHHHHHHHhcCCee--cCceeEEeecc
Confidence 99999999988 679999999999999 59999999987
No 134
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.86 E-value=5.3e-05 Score=46.42 Aligned_cols=50 Identities=22% Similarity=0.589 Sum_probs=42.0
Q ss_pred CEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--CCeEEEEecCHHHHHHHH
Q 026341 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKAL 117 (240)
Q Consensus 66 ~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--kg~afV~f~~~~~a~~A~ 117 (240)
+.|-|.+. +... .++|..+|..||+|..+.+. ..+.+|+|.+..+|+.||
T Consensus 2 ~wI~V~Gf-~~~~-~~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGF-PPDL-AEEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeE-CchH-HHHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 45788888 5333 46777899999999999998 789999999999999985
No 135
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.86 E-value=3.9e-05 Score=65.32 Aligned_cols=62 Identities=26% Similarity=0.469 Sum_probs=53.6
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe---------------------CCeEEEEecCHHHHHHHHHh
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---------------------RNFAFVQFETQEEATKALES 119 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~---------------------kg~afV~f~~~~~a~~A~~~ 119 (240)
...+..+|.+.|| |.+-.-+.|.++|..+|.|..|.|. +-+|+|+|+..+.|.+|.+.
T Consensus 227 eel~srtivaenL-P~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 227 EELPSRTIVAENL-PLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred cccccceEEEecC-CcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 3347899999999 8877779999999999999999982 34799999999999999998
Q ss_pred cCCC
Q 026341 120 TDRS 123 (240)
Q Consensus 120 l~g~ 123 (240)
|+..
T Consensus 306 ~~~e 309 (484)
T KOG1855|consen 306 LNPE 309 (484)
T ss_pred hchh
Confidence 8544
No 136
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.84 E-value=5e-05 Score=62.84 Aligned_cols=74 Identities=22% Similarity=0.455 Sum_probs=59.7
Q ss_pred CCCCEEEEeccCCCCCCHH---HH--HHhhccCCCeEEEEEeC---------C--eEEEEecCHHHHHHHHHhcCCCccc
Q 026341 63 RPTKTLFVINFDPIRTRER---DI--KRHFEPYGNVLHVRIRR---------N--FAFVQFETQEEATKALESTDRSKLV 126 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~---~l--~~~f~~~G~i~~~~~~k---------g--~afV~f~~~~~a~~A~~~l~g~~~~ 126 (240)
....-+||-+|+|.-..++ .| .++|.+||+|..|.|.+ + -.||+|.+.++|..||..++|..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 3456789999955444444 22 57899999999999853 2 2499999999999999999999999
Q ss_pred CcEEEEEEee
Q 026341 127 DRVISVEYAL 136 (240)
Q Consensus 127 g~~l~v~~a~ 136 (240)
|+.|++.|..
T Consensus 192 Gr~lkatYGT 201 (480)
T COG5175 192 GRVLKATYGT 201 (480)
T ss_pred CceEeeecCc
Confidence 9999999876
No 137
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.78 E-value=5.5e-05 Score=68.04 Aligned_cols=125 Identities=17% Similarity=0.113 Sum_probs=89.1
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC----------CCC------------------CCCCCC
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG----------RHR------------------DGSKSM 59 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~----------~~~------------------~~~~~~ 59 (240)
.|-++|+|....++.+|+. -|.+.+ -.+.|.|..+....- .+. .+....
T Consensus 352 tG~~~v~f~~~~~~q~A~~-rn~~~~--~~R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp 428 (944)
T KOG4307|consen 352 TGRKTVMFTPQAPFQNAFT-RNPSDD--VNRPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVP 428 (944)
T ss_pred CCceEEEecCcchHHHHHh-cCchhh--hhcceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCC
Confidence 6889999999999999987 444443 266676654431110 000 011122
Q ss_pred CCCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEE-EEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEE
Q 026341 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH-VRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVIS 131 (240)
Q Consensus 60 ~~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~-~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 131 (240)
.....+.+|||..| |..+++.++.++|...-.|+. |.|. .+.|||+|..++++..|+..-+...+..+.|.
T Consensus 429 ~P~~ag~~lyv~~l-P~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~ir 507 (944)
T KOG4307|consen 429 FPGGAGGALYVFQL-PVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIR 507 (944)
T ss_pred CCCCccceEEeccC-CccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEE
Confidence 34455789999999 999999999999998777766 5552 57999999999999998876666667778888
Q ss_pred EEEee
Q 026341 132 VEYAL 136 (240)
Q Consensus 132 v~~a~ 136 (240)
|.-..
T Consensus 508 v~si~ 512 (944)
T KOG4307|consen 508 VDSIA 512 (944)
T ss_pred eechh
Confidence 76543
No 138
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.76 E-value=4.3e-05 Score=52.66 Aligned_cols=44 Identities=34% Similarity=0.354 Sum_probs=39.1
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
+...+|-|||.|++..+|.+|+..|+|..+ .+..|.|.|..+..
T Consensus 53 ~k~TrGTAFVVYedi~dAk~A~dhlsg~n~--~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 53 TKETRGTAFVVYEDIFDAKKACDHLSGYNV--DNRYLVVLYYQPED 96 (124)
T ss_pred ccCcCceEEEEehHhhhHHHHHHHhccccc--CCceEEEEecCHHH
Confidence 445699999999999999999999999999 59999999887654
No 139
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=2.2e-05 Score=65.36 Aligned_cols=45 Identities=24% Similarity=0.426 Sum_probs=41.7
Q ss_pred cccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCC
Q 026341 2 CISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 48 (240)
Q Consensus 2 ~~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~ 48 (240)
++||.+..||||||++.+++++|.-+|++.+| +.+.|.|.|+..-
T Consensus 275 ~ktgdsLqyaFiEFen~escE~AyFKMdNvLI--DDrRIHVDFSQSV 319 (479)
T KOG0415|consen 275 RKTGDSLQYAFIEFENKESCEQAYFKMDNVLI--DDRRIHVDFSQSV 319 (479)
T ss_pred ccccchhheeeeeecchhhHHHHHhhhcceee--ccceEEeehhhhh
Confidence 47899999999999999999999999999999 8999999998753
No 140
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.72 E-value=2.1e-05 Score=62.62 Aligned_cols=42 Identities=21% Similarity=0.315 Sum_probs=36.7
Q ss_pred cccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEec
Q 026341 2 CISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 45 (240)
Q Consensus 2 ~~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a 45 (240)
++|++++||+||.|.++.++..||.+|||+.+ +.++|++.-+
T Consensus 226 kRTgKSkgygfVSf~~pad~~rAmrem~gkyV--gsrpiklRkS 267 (290)
T KOG0226|consen 226 KRTGKSKGYGFVSFRDPADYVRAMREMNGKYV--GSRPIKLRKS 267 (290)
T ss_pred ccccccccceeeeecCHHHHHHHHHhhccccc--ccchhHhhhh
Confidence 36999999999999999999999999999999 5777775533
No 141
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.71 E-value=0.00023 Score=52.56 Aligned_cols=76 Identities=21% Similarity=0.316 Sum_probs=55.0
Q ss_pred CCCCCCEEEEeccC---CC--CCCH---HHHHHhhccCCCeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFD---PI--RTRE---RDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~---~~--~~~~---~~l~~~f~~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
.++|..+|.|.-+. +. ...+ .+|.+.|..||++.-+++..+.-+|+|.+-+.|.+|+. |+|.+++|+.|+|
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~~mwVTF~dg~sALaals-~dg~~v~g~~l~i 101 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGDTMWVTFRDGQSALAALS-LDGIQVNGRTLKI 101 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETTCEEEEESSCHHHHHHHH-GCCSEETTEEEEE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCCeEEEEECccHHHHHHHc-cCCcEECCEEEEE
Confidence 45566777776552 11 1222 36788889999999999999999999999999999998 7999999999999
Q ss_pred EEeec
Q 026341 133 EYALK 137 (240)
Q Consensus 133 ~~a~~ 137 (240)
....+
T Consensus 102 ~LKtp 106 (146)
T PF08952_consen 102 RLKTP 106 (146)
T ss_dssp EE---
T ss_pred EeCCc
Confidence 88654
No 142
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.69 E-value=0.00013 Score=65.69 Aligned_cols=68 Identities=34% Similarity=0.465 Sum_probs=58.9
Q ss_pred CEEEEeccCCCCCCHHHHHHhhccCCCeE-EEEE-------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEE
Q 026341 66 KTLFVINFDPIRTRERDIKRHFEPYGNVL-HVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134 (240)
Q Consensus 66 ~~l~v~nl~~~~~~~~~l~~~f~~~G~i~-~~~~-------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 134 (240)
++|-+.|+ |++++-+||.+||..|-.+- .|.+ +.|-|.|.|++.++|..|...|+++.|.+++|.|.+
T Consensus 868 ~V~~~~n~-Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNF-PFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCC-CccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 48889999 99999999999999995432 2333 578999999999999999999999999999998865
No 143
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.68 E-value=1.6e-05 Score=62.00 Aligned_cols=100 Identities=21% Similarity=0.255 Sum_probs=74.9
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHHHH
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 85 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~ 85 (240)
+.| ||||+|+++..+..|++.|||..|. +.+|.|.+-...... -| ...++++.+..
T Consensus 48 ~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~--~~e~q~~~r~G~sha--------------------pl-d~r~~~ei~~~ 103 (267)
T KOG4454|consen 48 EQK-FAYVFFPNENSVQLAGQLENGDDLE--EDEEQRTLRCGNSHA--------------------PL-DERVTEEILYE 103 (267)
T ss_pred CCc-eeeeecccccchhhhhhhcccchhc--cchhhcccccCCCcc--------------------hh-hhhcchhhhee
Confidence 446 9999999999999999999999994 888887765532211 13 45677788888
Q ss_pred hhccCCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcE
Q 026341 86 HFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRV 129 (240)
Q Consensus 86 ~f~~~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~ 129 (240)
.|+.-|.+..+.+. +.++|+.+.-....-.++...++..+--.+
T Consensus 104 v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~ 154 (267)
T KOG4454|consen 104 VFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKK 154 (267)
T ss_pred eecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCCCC
Confidence 88888888888773 468889888777777777776665544333
No 144
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.66 E-value=1.9e-05 Score=63.06 Aligned_cols=59 Identities=25% Similarity=0.405 Sum_probs=50.5
Q ss_pred HHHHHhhc-cCCCeEEEEE-------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCC
Q 026341 81 RDIKRHFE-PYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 139 (240)
Q Consensus 81 ~~l~~~f~-~~G~i~~~~~-------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 139 (240)
++|...|+ +||+|..+.| ..|-++|.|..+++|++|++.||+..|.|++|.+++..-..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCc
Confidence 45555555 8999999877 36899999999999999999999999999999999986544
No 145
>PLN03121 nucleic acid binding protein; Provisional
Probab=97.64 E-value=8e-05 Score=59.50 Aligned_cols=42 Identities=24% Similarity=0.232 Sum_probs=36.1
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 48 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~ 48 (240)
.+..+|||||+|+++++|+.|+. |+|..| .+++|.|..+...
T Consensus 40 D~et~gfAfVtF~d~~aaetAll-LnGa~l--~d~~I~It~~~~y 81 (243)
T PLN03121 40 SGEYACTAYVTFKDAYALETAVL-LSGATI--VDQRVCITRWGQY 81 (243)
T ss_pred CCCcceEEEEEECCHHHHHHHHh-cCCCee--CCceEEEEeCccc
Confidence 34567999999999999999996 999999 5999999977643
No 146
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.50 E-value=0.00034 Score=55.98 Aligned_cols=96 Identities=23% Similarity=0.229 Sum_probs=76.2
Q ss_pred HHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE-
Q 026341 20 DAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI- 98 (240)
Q Consensus 20 ~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~- 98 (240)
-|+.|...|++... .++.|.|-|+.. ..|+|.|| ...++.+.|.+.|..||+|....+
T Consensus 6 ~ae~ak~eLd~~~~--~~~~lr~rfa~~------------------a~l~V~nl-~~~~sndll~~~f~~fg~~e~av~~ 64 (275)
T KOG0115|consen 6 LAEIAKRELDGRFP--KGRSLRVRFAMH------------------AELYVVNL-MQGASNDLLEQAFRRFGPIERAVAK 64 (275)
T ss_pred HHHHHHHhcCCCCC--CCCceEEEeecc------------------ceEEEEec-chhhhhHHHHHhhhhcCccchheee
Confidence 47778888999988 699999999983 56999999 667999999999999998876544
Q ss_pred ------eCCeEEEEecCHHHHHHHHHhcCCC----cccCcEEEEEEee
Q 026341 99 ------RRNFAFVQFETQEEATKALESTDRS----KLVDRVISVEYAL 136 (240)
Q Consensus 99 ------~kg~afV~f~~~~~a~~A~~~l~g~----~~~g~~l~v~~a~ 136 (240)
+.+-++|+|...-.|.+|+..+.-. .+.+.++.|....
T Consensus 65 vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~e 112 (275)
T KOG0115|consen 65 VDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPME 112 (275)
T ss_pred ecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChhh
Confidence 3578999999999999999877332 3445666555443
No 147
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.48 E-value=0.00044 Score=48.12 Aligned_cols=70 Identities=20% Similarity=0.391 Sum_probs=51.2
Q ss_pred CCEEEEeccCCCCCCHHHHHHhhccCCCeEEEE-------------Ee--CCeEEEEecCHHHHHHHHHhcCCCcccCc-
Q 026341 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVR-------------IR--RNFAFVQFETQEEATKALESTDRSKLVDR- 128 (240)
Q Consensus 65 ~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~-------------~~--kg~afV~f~~~~~a~~A~~~l~g~~~~g~- 128 (240)
...|.|-++ |.. ....|.+.|++||.|+... ++ ..+..|.|++..+|++||. .||..|.|.
T Consensus 6 ~~wVtVFGf-p~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGF-PPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp CCEEEEE----GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CeEEEEEcc-CHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 456888888 544 5678899999999998875 32 4689999999999999998 499999885
Q ss_pred EEEEEEeec
Q 026341 129 VISVEYALK 137 (240)
Q Consensus 129 ~l~v~~a~~ 137 (240)
-+-|.++.+
T Consensus 83 mvGV~~~~~ 91 (100)
T PF05172_consen 83 MVGVKPCDP 91 (100)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEEcHH
Confidence 445777643
No 148
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.00051 Score=60.68 Aligned_cols=71 Identities=17% Similarity=0.330 Sum_probs=57.6
Q ss_pred CCCEEEEeccCCCCCCH-------HHHHHhhccCCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCccc-Cc
Q 026341 64 PTKTLFVINFDPIRTRE-------RDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLV-DR 128 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~-------~~l~~~f~~~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~-g~ 128 (240)
-..+|+|.|+ |. +.. ..|..+|+++|+|..+.++ +||.|++|++..+|+.|++.|||+.|+ ++
T Consensus 57 ~D~vVvv~g~-Pv-V~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 57 FDSVVVVDGA-PV-VGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred cceEEEECCC-cc-cChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 3578899999 63 332 3467789999999999885 799999999999999999999999886 56
Q ss_pred EEEEEEee
Q 026341 129 VISVEYAL 136 (240)
Q Consensus 129 ~l~v~~a~ 136 (240)
++.|..-+
T Consensus 135 tf~v~~f~ 142 (698)
T KOG2314|consen 135 TFFVRLFK 142 (698)
T ss_pred eEEeehhh
Confidence 77776544
No 149
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.36 E-value=0.00012 Score=58.41 Aligned_cols=65 Identities=17% Similarity=0.312 Sum_probs=57.1
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe------------C--------CeEEEEecCHHHHHHHHHhcCCC
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------------R--------NFAFVQFETQEEATKALESTDRS 123 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~------------k--------g~afV~f~~~~~a~~A~~~l~g~ 123 (240)
..-+||+++| |..+....|+++|..||.|-.|.|. + .-|.|+|.+...|..+...||+.
T Consensus 73 k~GVvylS~I-Pp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNI-PPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccC-CCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 4678999999 7789999999999999999999882 1 13789999999999999999999
Q ss_pred cccCcE
Q 026341 124 KLVDRV 129 (240)
Q Consensus 124 ~~~g~~ 129 (240)
.|.|..
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 999853
No 150
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.32 E-value=0.00017 Score=60.04 Aligned_cols=68 Identities=12% Similarity=0.235 Sum_probs=55.6
Q ss_pred CEEEEeccCCCCCCHHHHHHhhccCC--CeEEEEE--------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEE
Q 026341 66 KTLFVINFDPIRTRERDIKRHFEPYG--NVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134 (240)
Q Consensus 66 ~~l~v~nl~~~~~~~~~l~~~f~~~G--~i~~~~~--------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 134 (240)
.++||+|| .|.+|++||.+.+...| .+..+++ .||||+|...+....++.++.|-.++|.|+.-.|.-
T Consensus 81 ~~~YvGNL-~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 81 YCCYVGNL-LWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred EEEEecce-eEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 57999999 89999999999888776 3333333 489999999999999999999999999996555433
No 151
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.29 E-value=0.00034 Score=59.08 Aligned_cols=69 Identities=19% Similarity=0.283 Sum_probs=55.9
Q ss_pred CCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe-----------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEE
Q 026341 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-----------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 133 (240)
Q Consensus 65 ~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~-----------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 133 (240)
...|.|.|| ...++.++|+.+|...|+|..+.|. .-.|||.|.+...+..|.. |.++.|-++.|.|-
T Consensus 7 ~~vIqvani-spsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~ 84 (479)
T KOG4676|consen 7 LGVIQVANI-SPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVR 84 (479)
T ss_pred Cceeeeccc-CchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEE
Confidence 348999999 5589999999999999999998873 3589999999999888876 67777767666654
Q ss_pred Ee
Q 026341 134 YA 135 (240)
Q Consensus 134 ~a 135 (240)
.+
T Consensus 85 p~ 86 (479)
T KOG4676|consen 85 PY 86 (479)
T ss_pred ec
Confidence 43
No 152
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.17 E-value=1.1e-05 Score=73.94 Aligned_cols=112 Identities=23% Similarity=0.213 Sum_probs=83.9
Q ss_pred eEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHHHHhhcc
Q 026341 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 89 (240)
Q Consensus 10 ~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~f~~ 89 (240)
++++++....+|+.|.. ..+..+ +++.+.|..+.+........ -.+.......++||.|| +..+.+.+|...|..
T Consensus 616 ~~~~~~s~~~~~esat~-pa~~~~--a~~~~av~~ad~~~~~~~~k-vs~n~~R~~~~~fvsnl-~~~~~~~dl~~~~~~ 690 (881)
T KOG0128|consen 616 QQQKVQSKHGSAESATV-PAGGAL--ANRSAAVGLADAEEKEENFK-VSPNEIRDLIKIFVSNL-SPKMSEEDLSERFSP 690 (881)
T ss_pred hhhhhhccccchhhccc-cccccc--CCccccCCCCCchhhhhccC-cCchHHHHHHHHHHhhc-chhhcCchhhhhcCc
Confidence 78899999999988887 677777 58888888777655321110 01111233468999999 788999999999999
Q ss_pred CCCeEEEEE--------eCCeEEEEecCHHHHHHHHHhcCCCccc
Q 026341 90 YGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLV 126 (240)
Q Consensus 90 ~G~i~~~~~--------~kg~afV~f~~~~~a~~A~~~l~g~~~~ 126 (240)
+|.+..+.+ .+|+|||+|...+++.+||...++..+.
T Consensus 691 ~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 691 SGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred cchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 987766655 4799999999999999999876655554
No 153
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.16 E-value=0.0011 Score=54.18 Aligned_cols=57 Identities=33% Similarity=0.360 Sum_probs=49.4
Q ss_pred HHHHHHhhccCCCeEEEEEe---------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEee
Q 026341 80 ERDIKRHFEPYGNVLHVRIR---------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136 (240)
Q Consensus 80 ~~~l~~~f~~~G~i~~~~~~---------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 136 (240)
++++++.+.+||+|..|.|. .--.||+|+..++|.+|+-.|||..|+|+.+...|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 45678889999999998873 2358999999999999999999999999999887754
No 154
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.14 E-value=0.0032 Score=39.61 Aligned_cols=54 Identities=24% Similarity=0.297 Sum_probs=43.7
Q ss_pred CCEEEEeccCCCCCCHHHHHHhhccC----CCeEEEEEeCCeEEEEecCHHHHHHHHHhc
Q 026341 65 TKTLFVINFDPIRTRERDIKRHFEPY----GNVLHVRIRRNFAFVQFETQEEATKALEST 120 (240)
Q Consensus 65 ~~~l~v~nl~~~~~~~~~l~~~f~~~----G~i~~~~~~kg~afV~f~~~~~a~~A~~~l 120 (240)
...|+|.++ . .++.++|+.+|..| ++..--+|.-.-|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGv-d-~lsT~dI~~y~~~y~~~~~~~~IEWIdDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGV-D-ELSTDDIKAYFSEYFDEEGPFRIEWIDDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcC-C-CCCHHHHHHHHHHhcccCCCceEEEecCCcEEEEECCHHHHHHHHHcC
Confidence 357999999 4 68889999999998 544434445678999999999999999865
No 155
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.08 E-value=0.0036 Score=41.59 Aligned_cols=56 Identities=21% Similarity=0.468 Sum_probs=45.7
Q ss_pred CCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEecCHHHHHHHHHhcCC
Q 026341 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDR 122 (240)
Q Consensus 65 ~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g 122 (240)
....+|. + |..+...||.++|+.||.|.-..|...-|||...+.+.|..|+..+.-
T Consensus 9 dHVFhlt-F-PkeWK~~DI~qlFspfG~I~VsWi~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-F-PKEWKTSDIYQLFSPFGQIYVSWINDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE----TT--HHHHHHHCCCCCCEEEEEECTTEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-C-chHhhhhhHHHHhccCCcEEEEEEcCCcEEEEeecHHHHHHHHHHhcc
Confidence 3455565 7 788999999999999999999999999999999999999999988753
No 156
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.91 E-value=0.002 Score=42.84 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=29.9
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~ 50 (240)
+.|-|+|-|.+++.|+.|.+.|+|..++ |.+|.|.|......
T Consensus 38 ~~~tAilrF~~~~~A~RA~KRmegEdVf--G~kI~v~~~~~~r~ 79 (90)
T PF11608_consen 38 SGGTAILRFPNQEFAERAQKRMEGEDVF--GNKISVSFSPKNRE 79 (90)
T ss_dssp -TT-EEEEESSHHHHHHHHHHHTT--SS--SS--EEESS--S--
T ss_pred eCCEEEEEeCCHHHHHHHHHhhcccccc--cceEEEEEcCCccc
Confidence 4689999999999999999999999885 99999999875443
No 157
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.88 E-value=0.0022 Score=44.36 Aligned_cols=44 Identities=18% Similarity=0.341 Sum_probs=34.6
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccC--CCceEEEEecc
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGY--DRRRLSVEWAR 46 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~--~g~~l~v~~a~ 46 (240)
++..+.|||||-|.++++|....+.++|..+.. ..+...|.||.
T Consensus 40 ~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yAr 85 (97)
T PF04059_consen 40 KNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISYAR 85 (97)
T ss_pred cCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEehhH
Confidence 466779999999999999999999999987721 24555666665
No 158
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.76 E-value=0.0017 Score=55.56 Aligned_cols=74 Identities=20% Similarity=0.292 Sum_probs=61.1
Q ss_pred CEEEEeccCCCCCCHHHHHHhhccC--CCeEEEEEeCCeEEEEecCHHHHHHHHHhcCCC-cccCcEEEEEEeecCCC
Q 026341 66 KTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRS-KLVDRVISVEYALKDDS 140 (240)
Q Consensus 66 ~~l~v~nl~~~~~~~~~l~~~f~~~--G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~a~~~~~ 140 (240)
..|||+|| ...++..+|..+|... +.-..+-+..||+||.+.+...|.+|++.++|+ ++.|..+.|+...++..
T Consensus 2 nklyignL-~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNL-SPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred Cccccccc-CCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 35899999 6689999999999754 333445556799999999999999999999986 68899999998876544
No 159
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.74 E-value=0.0061 Score=53.51 Aligned_cols=56 Identities=21% Similarity=0.395 Sum_probs=46.1
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE----------eCC---eEEEEecCHHHHHHHHHhc
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI----------RRN---FAFVQFETQEEATKALEST 120 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~----------~kg---~afV~f~~~~~a~~A~~~l 120 (240)
-...|||++| |++++|+.|...|..||.+.--+- ++| |+|+.|+++...+..|.+.
T Consensus 258 ~S~KVFvGGl-p~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 258 YSRKVFVGGL-PWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccceeecCC-CccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 3578999999 999999999999999997643221 467 9999999999888877654
No 160
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.72 E-value=0.0051 Score=54.46 Aligned_cols=68 Identities=15% Similarity=0.230 Sum_probs=52.8
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhcc--CCCeEEEEE-eCCeEEEEecCHHHHHHHHHhcCC--CcccCcEEEE
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEP--YGNVLHVRI-RRNFAFVQFETQEEATKALESTDR--SKLVDRVISV 132 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~--~G~i~~~~~-~kg~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~v 132 (240)
.-|.|+|..| +..+-.++|+.+|.. +-++..|.+ ...-=||+|++..||+.|.+.|.. ++|.|++|..
T Consensus 174 kRcIvilREI-pettp~e~Vk~lf~~encPk~iscefa~N~nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREI-PETTPIEVVKALFKGENCPKVISCEFAHNDNWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeec-CCCChHHHHHHHhccCCCCCceeeeeeecCceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4577888999 888999999999975 567888887 355678999999999999887743 3555655543
No 161
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=96.64 E-value=0.0023 Score=51.60 Aligned_cols=42 Identities=26% Similarity=0.339 Sum_probs=37.4
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 48 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~ 48 (240)
++.+||||||+|.+.+.++.|+. ||+..| .|..|.|.+....
T Consensus 139 ~~~~k~~~yvef~~~~~~~~ay~-l~gs~i--~~~~i~vt~~r~~ 180 (231)
T KOG4209|consen 139 RGHPKGFAYVEFSSYELVEEAYK-LDGSEI--PGPAIEVTLKRTN 180 (231)
T ss_pred CCCcceeEEEecccHhhhHHHhh-cCCccc--ccccceeeeeeee
Confidence 44679999999999999999999 999999 6999999887744
No 162
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=96.57 E-value=0.0018 Score=57.23 Aligned_cols=129 Identities=15% Similarity=0.106 Sum_probs=77.2
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCC-----------CCCCCCCCCCCCEEEEec
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRD-----------GSKSMANQRPTKTLFVIN 72 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~-----------~~~~~~~~~~~~~l~v~n 72 (240)
|....|.+||+|.|..+|+.|+++|++..| .|+.|+............. ....+....+-..+++ .
T Consensus 108 t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~ 184 (549)
T KOG4660|consen 108 TPNKRGIVFVEFYDVRDAERALKALNRREI--AGKRIKRPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-M 184 (549)
T ss_pred ccccCceEEEEEeehHhHHHHHHHHHHHHh--hhhhhcCCCcccccchhcccchhhhhccchhhcCCCCCCcCCccee-e
Confidence 455689999999999999999999999999 5888872221111100000 0011122222233333 2
Q ss_pred cCCCCCCHHHHHHhhccCCCeEEEEE--eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeec
Q 026341 73 FDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 137 (240)
Q Consensus 73 l~~~~~~~~~l~~~f~~~G~i~~~~~--~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 137 (240)
| ....+...+...+.-+|.+..-.. ....-|++|.+..++..+...+ |..+.+....++++.+
T Consensus 185 l-~P~~s~~~~~~~~~~~~~~~~~~~~~~~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 185 L-SPTRSSILLEHISSVDGSSPGRETPLLNHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred e-ccchhhhhhhcchhccCccccccccchhhhhhhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 7 434555555666667776655222 2346778888888885555533 6667777766666554
No 163
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=96.55 E-value=0.0026 Score=56.48 Aligned_cols=40 Identities=28% Similarity=0.398 Sum_probs=37.3
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
++||||++.+.++|.+||+.|+.+.| +|+.|.|+.+++..
T Consensus 447 RCYGfVTMSts~eAtkCI~hLHrTEL--HGrmISVEkaKNEp 486 (940)
T KOG4661|consen 447 RCYGFVTMSTSAEATKCIEHLHRTEL--HGRMISVEKAKNEP 486 (940)
T ss_pred ceeEEEEecchHHHHHHHHHhhhhhh--cceeeeeeecccCc
Confidence 78999999999999999999999999 79999999998554
No 164
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.38 E-value=0.031 Score=41.06 Aligned_cols=75 Identities=17% Similarity=0.288 Sum_probs=57.0
Q ss_pred CCCCCCCEEEEeccCCCCCC-HHH---HHHhhccCCCeEEEEEe-CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEE
Q 026341 60 ANQRPTKTLFVINFDPIRTR-ERD---IKRHFEPYGNVLHVRIR-RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134 (240)
Q Consensus 60 ~~~~~~~~l~v~nl~~~~~~-~~~---l~~~f~~~G~i~~~~~~-kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 134 (240)
...+|-.+|.|.=| ..++. .+| |...++.||+|..|.+. +.-|.|.|.+..+|-+|+.+++. ..-|.-+.+.|
T Consensus 81 ~kepPMsTIVVRWl-kknm~~~edl~sV~~~Ls~fGpI~SVT~cGrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 81 TKEPPMSTIVVRWL-KKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CCCCCceeEEeehh-hhcCChHHHHHHHHHHHHhcCCcceeeecCCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 35667788888766 43332 344 44556789999999885 77999999999999999999876 56677777877
Q ss_pred ee
Q 026341 135 AL 136 (240)
Q Consensus 135 a~ 136 (240)
..
T Consensus 159 qq 160 (166)
T PF15023_consen 159 QQ 160 (166)
T ss_pred cc
Confidence 54
No 165
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.27 E-value=0.0045 Score=51.74 Aligned_cols=40 Identities=30% Similarity=0.385 Sum_probs=34.3
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccC
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 47 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~ 47 (240)
.+++|||+|.+-++|+.|.+++-..++ ++|+.|+|.|..+
T Consensus 263 ~~~CAFv~ftTR~aAE~Aae~~~n~lv-I~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 263 RKGCAFVTFTTREAAEKAAEKSFNKLV-INGFRLKIKWGRP 302 (377)
T ss_pred ccccceeeehhhHHHHHHHHhhcceee-ecceEEEEEeCCC
Confidence 378999999999999999987655444 4899999999998
No 166
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.21 E-value=0.028 Score=36.84 Aligned_cols=59 Identities=29% Similarity=0.330 Sum_probs=38.5
Q ss_pred CCCCHHHHHHhhccCC-----CeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEe
Q 026341 76 IRTRERDIKRHFEPYG-----NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135 (240)
Q Consensus 76 ~~~~~~~l~~~f~~~G-----~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 135 (240)
..++..+|..++...+ .|-.+.|...|+||+-.. +.|+.++..|++..+.|+.|.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4688889988887664 566888899999999875 5788999999999999999999875
No 167
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.89 E-value=0.019 Score=44.62 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=45.1
Q ss_pred CHHHHHHhhccCCCeEEEEEeCC--eEEEEecCHHHHHHHHHhcC--CCcccCcEEEEEEeecC
Q 026341 79 RERDIKRHFEPYGNVLHVRIRRN--FAFVQFETQEEATKALESTD--RSKLVDRVISVEYALKD 138 (240)
Q Consensus 79 ~~~~l~~~f~~~G~i~~~~~~kg--~afV~f~~~~~a~~A~~~l~--g~~~~g~~l~v~~a~~~ 138 (240)
..+.|+++|..++.+..+.+.+. -..|.|.+.+.|..|...|+ +..+.|..|.|.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999998887777664 58899999999999999999 99999999999998543
No 168
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.83 E-value=0.011 Score=52.50 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=34.6
Q ss_pred CCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEecc
Q 026341 5 LHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 46 (240)
Q Consensus 5 ~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~ 46 (240)
+..+||.|++|++..+|+.|++.|||+.|. ....+.|...+
T Consensus 102 ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld-knHtf~v~~f~ 142 (698)
T KOG2314|consen 102 GGTKGYLFVEYASMRDAKKAVKSLNGKRLD-KNHTFFVRLFK 142 (698)
T ss_pred CCeeeEEEEEecChhhHHHHHHhcccceec-ccceEEeehhh
Confidence 447999999999999999999999999985 46667776444
No 169
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=95.69 E-value=0.021 Score=46.19 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=40.4
Q ss_pred cccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 2 CISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 2 ~~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
...+.+.|.|=|.|...+||+.||+.+||+.| +|++|+++......
T Consensus 118 ~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~l--dG~~mk~~~i~~~~ 163 (243)
T KOG0533|consen 118 DRAGRSLGTADVSFNRRDDAERAVKKYNGVAL--DGRPMKIEIISSPS 163 (243)
T ss_pred CCCCCCCccceeeecchHhHHHHHHHhcCccc--CCceeeeEEecCcc
Confidence 45788899999999999999999999999777 89999998777544
No 170
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.65 E-value=0.035 Score=42.97 Aligned_cols=73 Identities=16% Similarity=0.219 Sum_probs=50.2
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhcc-CCCe---EEEEE--e--------CCeEEEEecCHHHHHHHHHhcCCCcccC--
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEP-YGNV---LHVRI--R--------RNFAFVQFETQEEATKALESTDRSKLVD-- 127 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~-~G~i---~~~~~--~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g-- 127 (240)
....|.|.+| |..+|++++.+.+.. ++.. .++.. . -.-|||.|.+.+++...+..++|..|.+
T Consensus 6 ~~~KvVIR~L-PP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 6 EGTKVVIRRL-PPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ---EEEEEEE--TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred cCceEEEeCC-CCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 4568999999 789999999998877 6654 33331 1 2469999999999999999999976643
Q ss_pred ---cEEEEEEeec
Q 026341 128 ---RVISVEYALK 137 (240)
Q Consensus 128 ---~~l~v~~a~~ 137 (240)
....|++|--
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 4556777754
No 171
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=95.65 E-value=0.017 Score=39.10 Aligned_cols=74 Identities=16% Similarity=0.240 Sum_probs=46.7
Q ss_pred EEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHHHHhhc
Q 026341 11 AFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 88 (240)
Q Consensus 11 aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~f~ 88 (240)
|.|+|.++.-|+..+. +....+.+++..+.|....-..... ............+|.|.|| |....+++|++.++
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~--~k~qv~~~vs~rtVlvsgi-p~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHL--QKFQVFSGVSKRTVLVSGI-PDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCc--eEEEEEEcccCCEEEEeCC-CCCCChhhheeeEE
Confidence 7899999999998887 4444444456666555332111110 0011123445788999999 77899999987654
No 172
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.61 E-value=0.043 Score=45.23 Aligned_cols=69 Identities=20% Similarity=0.307 Sum_probs=51.9
Q ss_pred EEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--CCeEEEEecCHHHHHHHHHhcCCCcccCcE-EEEEEeecC
Q 026341 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLVDRV-ISVEYALKD 138 (240)
Q Consensus 67 ~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--kg~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~a~~~ 138 (240)
=|.|.+++| -...-|..+|++||+|+..... -.+-+|.|.+..+|++||.. ||+.|+|.. |-|.-+..+
T Consensus 199 WVTVfGFpp--g~~s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 199 WVTVFGFPP--GQVSIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred eEEEeccCc--cchhHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCH
Confidence 356667733 3346789999999999887764 35899999999999999984 999998854 445554443
No 173
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.60 E-value=0.085 Score=33.70 Aligned_cols=56 Identities=16% Similarity=0.272 Sum_probs=45.8
Q ss_pred CCCCHHHHHHhhccCCCeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 76 IRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 76 ~~~~~~~l~~~f~~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
..++-++|+..+..|+ ...|..-+.-=||.|.+..+|++|....+|..+.+..|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~-~~~I~~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYR-WDRIRDDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCC-cceEEecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 3678899999999996 4445555555689999999999999999999988877655
No 174
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=95.58 E-value=0.018 Score=53.07 Aligned_cols=45 Identities=24% Similarity=0.514 Sum_probs=39.9
Q ss_pred CCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 5 LHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 5 ~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
+.++|+|||.+..-++|++|+.+|+...| .++.|+|.|+..+...
T Consensus 454 i~~R~cAfI~M~~RqdA~kalqkl~n~kv--~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 454 IPPRGCAFIKMVRRQDAEKALQKLSNVKV--ADKTIKIAWAVGKGPK 498 (894)
T ss_pred ccCCceeEEEEeehhHHHHHHHHHhcccc--cceeeEEeeeccCCcc
Confidence 34599999999999999999999999888 6999999999976543
No 175
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.53 E-value=0.0076 Score=52.38 Aligned_cols=72 Identities=21% Similarity=0.281 Sum_probs=57.2
Q ss_pred CCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeec
Q 026341 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 137 (240)
Q Consensus 65 ~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 137 (240)
.+.|-+.-.+...-+-++|..+|.+||+|..|.+- --.|.|+|.+..+|-+|.. .++..|+|+.|+|.|-.+
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 34455555522234568999999999999998873 4689999999999977765 699999999999999886
No 176
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.45 E-value=0.52 Score=33.43 Aligned_cols=70 Identities=19% Similarity=0.250 Sum_probs=48.9
Q ss_pred CCEEEEeccCCCCCCHHHHHHhhccCC-CeEEEEEeC------CeEEEEecCHHHHHHHHHhcCCCcccC---cEEEEEE
Q 026341 65 TKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRIRR------NFAFVQFETQEEATKALESTDRSKLVD---RVISVEY 134 (240)
Q Consensus 65 ~~~l~v~nl~~~~~~~~~l~~~f~~~G-~i~~~~~~k------g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~ 134 (240)
...+.+... |+.++.++|..+.+.+- .|..+.|.+ -.++|.|.+.++|.+-...+||+.+.- ..+.|-|
T Consensus 13 ~~~~~l~vp-~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Chvvf 91 (110)
T PF07576_consen 13 STLCCLAVP-PYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVF 91 (110)
T ss_pred ceEEEEEeC-cccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEE
Confidence 334444444 77777777877766664 566777742 378999999999999999999997653 4444444
Q ss_pred e
Q 026341 135 A 135 (240)
Q Consensus 135 a 135 (240)
.
T Consensus 92 V 92 (110)
T PF07576_consen 92 V 92 (110)
T ss_pred E
Confidence 3
No 177
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.44 E-value=0.01 Score=47.71 Aligned_cols=39 Identities=26% Similarity=0.418 Sum_probs=35.5
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccC
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 47 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~ 47 (240)
+.|=++|.|..+++|++|+..||+..| .|++|..++...
T Consensus 109 l~GNVYV~f~~Ee~ae~a~~~lnnRw~--~G~pi~ae~~pv 147 (260)
T KOG2202|consen 109 LVGNVYVKFRSEEDAEAALEDLNNRWY--NGRPIHAELSPV 147 (260)
T ss_pred hhhhhhhhcccHHHHHHHHHHHcCccc--cCCcceeeecCc
Confidence 478899999999999999999999999 699999887764
No 178
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.95 E-value=0.0085 Score=50.02 Aligned_cols=72 Identities=14% Similarity=0.375 Sum_probs=54.7
Q ss_pred CEEEEeccCCCCCCHH-HH--HHhhccCCCeEEEEEeC-----------CeEEEEecCHHHHHHHHHhcCCCcccCcEEE
Q 026341 66 KTLFVINFDPIRTRER-DI--KRHFEPYGNVLHVRIRR-----------NFAFVQFETQEEATKALESTDRSKLVDRVIS 131 (240)
Q Consensus 66 ~~l~v~nl~~~~~~~~-~l--~~~f~~~G~i~~~~~~k-----------g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 131 (240)
.-+||-+| +..+..+ .| .+.|.+||.|..|.+.+ .-++|+|+..++|..||...+|..++|+.|+
T Consensus 78 nlvyvvgl-~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGL-PLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCC-CccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 45677777 4444333 34 34678889999988843 2489999999999999999999999999988
Q ss_pred EEEeecC
Q 026341 132 VEYALKD 138 (240)
Q Consensus 132 v~~a~~~ 138 (240)
+.+...+
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 7776543
No 179
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.88 E-value=0.018 Score=52.13 Aligned_cols=72 Identities=18% Similarity=0.170 Sum_probs=63.1
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 134 (240)
..++..++||+|+ .+.+..+-++.++..+|-|..+...+ |+|.+|..+..+..|+..++-..++|..+.+..
T Consensus 36 ~~~~~~~vfv~~~-~~~~s~~~~~~il~~~g~v~s~kr~~-fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 36 PLPPRDTVFVGNI-SYLVSQEFWKSILAKSGFVPSWKRDK-FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCCceeEecch-hhhhhHHHHHHHHhhCCcchhhhhhh-hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4567789999999 78899999999999999887776655 999999999999999999999999998887765
No 180
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=94.20 E-value=0.032 Score=46.99 Aligned_cols=45 Identities=24% Similarity=0.163 Sum_probs=40.3
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
+|+..||-|.|.|+|+..|+.||.-+++..|+ +..|+|.+|....
T Consensus 111 eT~~~KGeatvS~~D~~~akaai~~~agkdf~--gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 111 ETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC--GNTIKVSLAERRT 155 (351)
T ss_pred cccCcCCceeeeecChhhhhhhhhhhcccccc--CCCchhhhhhhcc
Confidence 58889999999999999999999999999995 7899998887544
No 181
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=94.18 E-value=0.044 Score=50.16 Aligned_cols=37 Identities=24% Similarity=0.465 Sum_probs=34.5
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEecc
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 46 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~ 46 (240)
..+|||-|-+-.||+.|++.|+|+.++ +.+|++.|++
T Consensus 219 r~cgfvafmnR~D~era~k~lqg~iv~--~~e~K~gWgk 255 (877)
T KOG0151|consen 219 RNCGFVAFMNRADAERALKELQGIIVM--EYEMKLGWGK 255 (877)
T ss_pred cccceeeehhhhhHHHHHHHhcceeee--eeeeeecccc
Confidence 679999999999999999999999995 8999999996
No 182
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.08 E-value=0.0085 Score=55.92 Aligned_cols=72 Identities=24% Similarity=0.355 Sum_probs=60.3
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEe
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 135 (240)
..+.+||++|| +..+++.+|...|..+|.|..|.|. ..|+||.|.+...+-.|...+.+..|..-.+.+-+.
T Consensus 370 ~atrTLf~Gnl-~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNL-DSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCc-ccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 34689999999 8899999999999999999999983 259999999999999999988888776545444444
No 183
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=93.90 E-value=1.6 Score=40.80 Aligned_cols=61 Identities=8% Similarity=0.196 Sum_probs=49.2
Q ss_pred CCCCHHHHHHhhccCCCe-----EEEEEeCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeec
Q 026341 76 IRTRERDIKRHFEPYGNV-----LHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 137 (240)
Q Consensus 76 ~~~~~~~l~~~f~~~G~i-----~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 137 (240)
..++..+|..++..-+.| -.|.|...|.||+... ..|...+..|++..+.|+.|.|+.+..
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEeCCceEEEcCh-hhHHHHHHHhccccccCCceEEEECCC
Confidence 468888888888766544 4567788999999764 568889999999999999999998853
No 184
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.24 E-value=0.34 Score=43.55 Aligned_cols=75 Identities=24% Similarity=0.417 Sum_probs=59.8
Q ss_pred CCCCCCCEEEEeccCCCC-CCHHHHHHhhccC----CCeEEEEE-----------------e------------------
Q 026341 60 ANQRPTKTLFVINFDPIR-TRERDIKRHFEPY----GNVLHVRI-----------------R------------------ 99 (240)
Q Consensus 60 ~~~~~~~~l~v~nl~~~~-~~~~~l~~~f~~~----G~i~~~~~-----------------~------------------ 99 (240)
....++..|-|.|| .|. +...+|.-+|..| |.|..|.| +
T Consensus 169 ~~~~~T~RLAVvNM-DWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ 247 (650)
T KOG2318|consen 169 VLGEETKRLAVVNM-DWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDD 247 (650)
T ss_pred ccccccceeeEecc-ccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccch
Confidence 34677899999999 664 7789999998876 58888887 1
Q ss_pred -----------C---------CeEEEEecCHHHHHHHHHhcCCCcccC--cEEEEEEe
Q 026341 100 -----------R---------NFAFVQFETQEEATKALESTDRSKLVD--RVISVEYA 135 (240)
Q Consensus 100 -----------k---------g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a 135 (240)
+ -||.|+|.+.+.|.+....++|.+|.. ..|.+.|.
T Consensus 248 ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 248 EEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 0 279999999999999999999999875 45555554
No 185
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=93.14 E-value=0.093 Score=46.01 Aligned_cols=39 Identities=33% Similarity=0.460 Sum_probs=30.4
Q ss_pred CCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEecc
Q 026341 5 LHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 46 (240)
Q Consensus 5 ~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~ 46 (240)
+++.+||||+|++.+++..||.+- .+.+++++|.|+--.
T Consensus 327 ~~~~~fgFV~f~~~~~~~~~i~As---p~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 327 GKNPCFGFVEFENAAAVQNAIEAS---PLEIGGRKLNVEEKR 365 (419)
T ss_pred CCcCceEEEEEeecchhhhhhhcC---ccccCCeeEEEEecc
Confidence 344599999999999999999844 444489999988544
No 186
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.72 E-value=0.076 Score=49.61 Aligned_cols=77 Identities=25% Similarity=0.325 Sum_probs=60.8
Q ss_pred CCCCEEEEeccCC-----------CCCCHHHHHHhhccCCCeEEEEEeC--CeEEEEecCHHHHHHHHHhcCCCcc--cC
Q 026341 63 RPTKTLFVINFDP-----------IRTRERDIKRHFEPYGNVLHVRIRR--NFAFVQFETQEEATKALESTDRSKL--VD 127 (240)
Q Consensus 63 ~~~~~l~v~nl~~-----------~~~~~~~l~~~f~~~G~i~~~~~~k--g~afV~f~~~~~a~~A~~~l~g~~~--~g 127 (240)
.++.+|-|.|+.| ...+-.-|-.+|.+||.|...+..+ ..|.|+|.+.+.|..|+++|+|+++ .|
T Consensus 284 ~ptn~isisnv~plqp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g 363 (1007)
T KOG4574|consen 284 LPTNTISISNVFPLQPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTG 363 (1007)
T ss_pred cccCcceecccccCcchhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccC
Confidence 3455666666533 3455567889999999999999865 5799999999999999999999864 58
Q ss_pred cEEEEEEeecCC
Q 026341 128 RVISVEYALKDD 139 (240)
Q Consensus 128 ~~l~v~~a~~~~ 139 (240)
-+.+|.+|+.-.
T Consensus 364 ~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 364 APSRVSFAKTLP 375 (1007)
T ss_pred CceeEEeccccc
Confidence 889999987543
No 187
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.12 E-value=0.24 Score=32.34 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=22.0
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEec
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 45 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a 45 (240)
..|+||+-... .|+.++..|++..+ .|++|.|+.|
T Consensus 40 ~~~S~vev~~~-~a~~v~~~l~~~~~--~gk~v~ve~A 74 (74)
T PF03880_consen 40 DNFSFVEVPEE-VAEKVLEALNGKKI--KGKKVRVERA 74 (74)
T ss_dssp SS-EEEEE-TT--HHHHHHHHTT--S--SS----EEE-
T ss_pred eeEEEEEECHH-HHHHHHHHhcCCCC--CCeeEEEEEC
Confidence 57899999877 69999999999999 6999999865
No 188
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.76 E-value=0.71 Score=40.39 Aligned_cols=63 Identities=17% Similarity=0.354 Sum_probs=53.5
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCC-CeEEEEEeC------CeEEEEecCHHHHHHHHHhcCCCcccC
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRIRR------NFAFVQFETQEEATKALESTDRSKLVD 127 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G-~i~~~~~~k------g~afV~f~~~~~a~~A~~~l~g~~~~g 127 (240)
++..|+|-.+ |..++.-||..|+..+- .|..+.+.+ -.++|.|.+.++|....+.+||..|..
T Consensus 73 ~~~mLcilaV-P~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAV-PAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEec-cccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 3889999999 88899999999998764 677777743 368899999999999999999998764
No 189
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=91.00 E-value=0.43 Score=35.46 Aligned_cols=36 Identities=28% Similarity=0.425 Sum_probs=29.9
Q ss_pred ceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccC
Q 026341 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 47 (240)
Q Consensus 9 G~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~ 47 (240)
+.-+|+|.+-++|-+|+. |+|..+ .|+.|+|..-.+
T Consensus 71 ~~mwVTF~dg~sALaals-~dg~~v--~g~~l~i~LKtp 106 (146)
T PF08952_consen 71 DTMWVTFRDGQSALAALS-LDGIQV--NGRTLKIRLKTP 106 (146)
T ss_dssp TCEEEEESSCHHHHHHHH-GCCSEE--TTEEEEEEE---
T ss_pred CeEEEEECccHHHHHHHc-cCCcEE--CCEEEEEEeCCc
Confidence 457899999999999998 999999 599999987664
No 190
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.21 E-value=0.41 Score=30.58 Aligned_cols=29 Identities=24% Similarity=0.494 Sum_probs=24.4
Q ss_pred EEEeCChhHHHHHHHhhCCCcccCCCceEEE
Q 026341 12 FVYFEDDRDAADAIRGLDNIPFGYDRRRLSV 42 (240)
Q Consensus 12 FV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v 42 (240)
||.|.+.++|++|....+|..++ +-.|.+
T Consensus 37 YIvF~~~~Ea~rC~~~~~~~~~f--~y~m~M 65 (66)
T PF11767_consen 37 YIVFNDSKEAERCFRAEDGTLFF--TYRMQM 65 (66)
T ss_pred EEEECChHHHHHHHHhcCCCEEE--EEEEEe
Confidence 89999999999999999999884 555544
No 191
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=87.38 E-value=0.74 Score=32.37 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=21.1
Q ss_pred ceEEEEeCChhHHHHHHHhhCCC---cccCCCceEEEE
Q 026341 9 GFAFVYFEDDRDAADAIRGLDNI---PFGYDRRRLSVE 43 (240)
Q Consensus 9 G~aFV~F~~~~~A~~A~~~l~g~---~~~~~g~~l~v~ 43 (240)
..|||-|.++++|+.|+..+... .+.+.+..+.+.
T Consensus 38 ~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 38 TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 47999999999999999877555 332245544444
No 192
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=87.23 E-value=0.81 Score=38.73 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=33.7
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEE
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVE 43 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~ 43 (240)
.+|++||||+|...++...++.|+.|-.+.| +|+.-.|-
T Consensus 119 ~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~i--HGQ~P~V~ 157 (498)
T KOG4849|consen 119 TNGQSKGYALLVLNSDAAVKQTMEILPTKTI--HGQSPTVL 157 (498)
T ss_pred cCCcccceEEEEecchHHHHHHHHhccccee--cCCCCeee
Confidence 4889999999999999999999999999998 57665554
No 193
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=86.39 E-value=0.93 Score=38.21 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=31.4
Q ss_pred EEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccC
Q 026341 12 FVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 47 (240)
Q Consensus 12 FV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~ 47 (240)
||+|.+.+||..||.+.+|..+ +|+.|+..|...
T Consensus 169 YITy~~kedAarcIa~vDgs~~--DGr~lkatYGTT 202 (480)
T COG5175 169 YITYSTKEDAARCIAEVDGSLL--DGRVLKATYGTT 202 (480)
T ss_pred EEEecchHHHHHHHHHhccccc--cCceEeeecCch
Confidence 9999999999999999999998 899999887763
No 194
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=85.88 E-value=1.3 Score=34.49 Aligned_cols=39 Identities=26% Similarity=0.276 Sum_probs=28.3
Q ss_pred ceEEEEeCChhHHHHHHHhhC--CCcccCCCceEEEEeccCCC
Q 026341 9 GFAFVYFEDDRDAADAIRGLD--NIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 9 G~aFV~F~~~~~A~~A~~~l~--g~~~~~~g~~l~v~~a~~~~ 49 (240)
+=..|.|.+.++|..|...|+ +..| .|..|.|.|+....
T Consensus 32 rRi~v~f~~~~~A~~~r~~l~~~~~~~--~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 32 RRIRVVFESPESAQRARQLLHWDGTSF--NGKRLRVYFGQPTP 72 (184)
T ss_dssp TEEEEE-SSTTHHHHHHHTST--TSEE--TTEE-EEE----SS
T ss_pred CEEEEEeCCHHHHHHHHHHhccccccc--CCCceEEEEccccc
Confidence 446899999999999999999 8888 59999999996443
No 195
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=85.43 E-value=0.53 Score=39.48 Aligned_cols=18 Identities=39% Similarity=0.431 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCCCCCCCc
Q 026341 218 YGRNRSPNFGRYRSRSPV 235 (240)
Q Consensus 218 ~~rs~s~~~~r~rsrs~~ 235 (240)
++|++|+++++++.+||.
T Consensus 383 RSR~~sRSrsrsre~s~k 400 (453)
T KOG2888|consen 383 RSRSRSRSRSRSREPSPK 400 (453)
T ss_pred hhcccccccccccCCCcc
Confidence 333334444444444544
No 196
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=85.38 E-value=2.6 Score=29.90 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=24.8
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCccc
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPFG 34 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~~ 34 (240)
++=.+.|.|.+.++|......+||+.|.
T Consensus 53 nrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 53 NRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3557899999999999999999999983
No 197
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=85.35 E-value=0.43 Score=39.90 Aligned_cols=72 Identities=17% Similarity=0.119 Sum_probs=55.3
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEe
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~--------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 135 (240)
..+++|++++ .+.+.+.++..++..+|.+..+.+ .++++.|.|...+.+..|+.......+.+..+...+.
T Consensus 87 ~~~~~f~g~~-s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGEL-SENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccc-ccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 3678899999 788888878888888887666554 4799999999999999999864445666666555444
Q ss_pred e
Q 026341 136 L 136 (240)
Q Consensus 136 ~ 136 (240)
.
T Consensus 166 ~ 166 (285)
T KOG4210|consen 166 T 166 (285)
T ss_pred c
Confidence 4
No 198
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=84.23 E-value=2 Score=29.94 Aligned_cols=37 Identities=11% Similarity=0.215 Sum_probs=28.9
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEecc
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 46 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~ 46 (240)
.++--|+|.++.+|.+||. .||.+|. +.-.+-|.+++
T Consensus 54 ~NWi~I~Y~~~~~A~rAL~-~NG~i~~-g~~mvGV~~~~ 90 (100)
T PF05172_consen 54 GNWIHITYDNPLSAQRALQ-KNGTIFS-GSLMVGVKPCD 90 (100)
T ss_dssp TTEEEEEESSHHHHHHHHT-TTTEEET-TCEEEEEEE-H
T ss_pred CCEEEEECCCHHHHHHHHH-hCCeEEc-CcEEEEEEEcH
Confidence 5678899999999999998 8999994 23455577764
No 199
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=83.25 E-value=0.63 Score=38.17 Aligned_cols=36 Identities=22% Similarity=0.502 Sum_probs=26.9
Q ss_pred CCCCEEEEeccCCC------------CCCHHHHHHhhccCCCeEEEEEe
Q 026341 63 RPTKTLFVINFDPI------------RTRERDIKRHFEPYGNVLHVRIR 99 (240)
Q Consensus 63 ~~~~~l~v~nl~~~------------~~~~~~l~~~f~~~G~i~~~~~~ 99 (240)
.-..+|++.+| |- -.++..|...|..||.|..|.|+
T Consensus 147 erpdti~la~i-p~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 147 ERPDTIHLAGI-PCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCCceeecCC-cceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 33467888777 52 13467799999999999999884
No 200
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=81.17 E-value=2.1 Score=36.06 Aligned_cols=7 Identities=43% Similarity=0.734 Sum_probs=2.6
Q ss_pred CCHHHHH
Q 026341 78 TRERDIK 84 (240)
Q Consensus 78 ~~~~~l~ 84 (240)
+++++|.
T Consensus 213 ~~k~eid 219 (367)
T KOG0835|consen 213 TTKREID 219 (367)
T ss_pred CcHHHHH
Confidence 3333333
No 201
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=79.50 E-value=0.5 Score=35.22 Aligned_cols=85 Identities=11% Similarity=0.030 Sum_probs=54.9
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHHHHh
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRH 86 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~ 86 (240)
..++..++|.+++++..++. .....+ ++..|.++...+...... ........=|.|.||+..-.+++.|+.+
T Consensus 54 ~~~~fl~~F~~~~d~~~vl~-~~p~~~--~~~~~~l~~W~~~~~~~~-----~~~~~~~vWVri~glP~~~~~~~~~~~i 125 (153)
T PF14111_consen 54 GDNLFLFQFESEEDRQRVLK-GGPWNF--NGHFLILQRWSPDFNPSE-----VKFEHIPVWVRIYGLPLHLWSEEILKAI 125 (153)
T ss_pred CCCeEEEEEEeccceeEEEe-cccccc--cccchhhhhhcccccccc-----cceeccchhhhhccCCHHHhhhHHHHHH
Confidence 36899999999999988876 222333 566777765553222110 0001112336678994445778889999
Q ss_pred hccCCCeEEEEEe
Q 026341 87 FEPYGNVLHVRIR 99 (240)
Q Consensus 87 f~~~G~i~~~~~~ 99 (240)
.+.+|++..+...
T Consensus 126 ~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 126 GSKIGEPIEVDEN 138 (153)
T ss_pred HHhcCCeEEEEcC
Confidence 9999999888763
No 202
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=78.95 E-value=3 Score=37.98 Aligned_cols=41 Identities=17% Similarity=0.362 Sum_probs=33.1
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCcccC-CCceEEEEeccC
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGY-DRRRLSVEWARG 47 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~~~-~g~~l~v~~a~~ 47 (240)
.|-.|||.|.+.++|.+.+.+|||..+.. +.+.|.|.|...
T Consensus 480 IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~ 521 (718)
T KOG2416|consen 480 IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRA 521 (718)
T ss_pred hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecch
Confidence 47789999999999999999999987632 456677777763
No 203
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=76.31 E-value=26 Score=25.53 Aligned_cols=59 Identities=15% Similarity=0.249 Sum_probs=46.4
Q ss_pred CCHHHHHHhhccCC-CeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEee
Q 026341 78 TRERDIKRHFEPYG-NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136 (240)
Q Consensus 78 ~~~~~l~~~f~~~G-~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 136 (240)
.+...+.+.+..-| .++.+....+...|.|.+.++-.+|.+.|....-++..|.+..+.
T Consensus 50 ~~~~~v~~~L~~~gI~~ksi~~~~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 50 PDGFYVYQHLDANGIHIKSITPENDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred chHHHHHHHHHHCCCCcceEEeeCCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 45678888888888 777888888899999999999999988877666556666666554
No 204
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=75.94 E-value=7.1 Score=33.04 Aligned_cols=6 Identities=33% Similarity=0.960 Sum_probs=2.3
Q ss_pred EEEEec
Q 026341 103 AFVQFE 108 (240)
Q Consensus 103 afV~f~ 108 (240)
.||-|.
T Consensus 176 v~vry~ 181 (367)
T KOG0835|consen 176 VFVRYS 181 (367)
T ss_pred eeeecC
Confidence 333333
No 205
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=75.83 E-value=2.8 Score=25.35 Aligned_cols=19 Identities=16% Similarity=0.506 Sum_probs=17.0
Q ss_pred ccceEEEEeCChhHHHHHH
Q 026341 7 YAGFAFVYFEDDRDAADAI 25 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~ 25 (240)
...+.+|.|.+..+|++|+
T Consensus 35 ~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 35 STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CCcEEEEEECCHHHHHhhC
Confidence 4678999999999999985
No 206
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.97 E-value=17 Score=31.62 Aligned_cols=56 Identities=23% Similarity=0.339 Sum_probs=44.1
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhccCCC--eEEEEEeCCeEEEEecCHHHHHHHHHh
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGN--VLHVRIRRNFAFVQFETQEEATKALES 119 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~--i~~~~~~kg~afV~f~~~~~a~~A~~~ 119 (240)
.-.++|-|.++ |.....+||...|+.|+. ..-.+|-...||..|.+...|.+||..
T Consensus 389 dlpHVlEIydf-p~efkteDll~~f~~yq~kgfdIkWvDdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 389 DLPHVLEIYDF-PDEFKTEDLLKAFETYQNKGFDIKWVDDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccceeEeccC-chhhccHHHHHHHHHhhcCCceeEEeecceeEEeecchHHHHHHhhc
Confidence 34678999999 767777899999998863 333344578999999999999999974
No 207
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=73.69 E-value=3.7 Score=31.66 Aligned_cols=60 Identities=12% Similarity=0.145 Sum_probs=45.3
Q ss_pred HHHHHhhccCCCeEEEEEeC--CeEEEEecCHHHHHHHHHhcCCCcccCc-EEEEEEeecCCC
Q 026341 81 RDIKRHFEPYGNVLHVRIRR--NFAFVQFETQEEATKALESTDRSKLVDR-VISVEYALKDDS 140 (240)
Q Consensus 81 ~~l~~~f~~~G~i~~~~~~k--g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~v~~a~~~~~ 140 (240)
....++|.+|.+.....+.+ +..-|.|.+.+.|..|...++...|.|. .+++-++.....
T Consensus 30 ~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~~~ 92 (193)
T KOG4019|consen 30 ALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPGHP 92 (193)
T ss_pred HHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCCCc
Confidence 34566677776665555544 4566789999999999999999999997 888888765443
No 208
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=73.34 E-value=17 Score=30.23 Aligned_cols=46 Identities=13% Similarity=0.254 Sum_probs=35.6
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCCCe-EEEEE--eCCeEEEEecCH
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNV-LHVRI--RRNFAFVQFETQ 110 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i-~~~~~--~kg~afV~f~~~ 110 (240)
...-|+++|| +.++.-.||+..+.+.+.+ ..+.. +.+-||+.|.+.
T Consensus 329 ~~~di~~~nl-~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 329 AKTDIKLTNL-SRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred cccceeeccC-ccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCc
Confidence 3466999999 8899999999999887633 33333 468899999764
No 209
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=73.27 E-value=4.7 Score=34.17 Aligned_cols=33 Identities=27% Similarity=0.200 Sum_probs=24.9
Q ss_pred EEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccC
Q 026341 11 AFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 47 (240)
Q Consensus 11 aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~ 47 (240)
|||+|++..+|..|.+.+.... ...+.|+.|-.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~----~~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR----PNSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC----CCCceEeeCCC
Confidence 7999999999999999655554 34556666553
No 210
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=63.73 E-value=47 Score=29.16 Aligned_cols=76 Identities=25% Similarity=0.455 Sum_probs=57.4
Q ss_pred CCCCCCCCEEEEeccCCC-CCCHHHHHHhhccC----CCeEEEEEe----------------------------------
Q 026341 59 MANQRPTKTLFVINFDPI-RTRERDIKRHFEPY----GNVLHVRIR---------------------------------- 99 (240)
Q Consensus 59 ~~~~~~~~~l~v~nl~~~-~~~~~~l~~~f~~~----G~i~~~~~~---------------------------------- 99 (240)
+..+.++..|.|-|| .| .+...+|..+|+.| |+|..|.|-
T Consensus 140 pe~G~~tkrLAvVnm-DWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~ 218 (622)
T COG5638 140 PEEGNPTKRLAVVNM-DWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKF 218 (622)
T ss_pred cCCCCcccceeEeec-ccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhcc
Confidence 445677899999999 65 47778898888765 577777760
Q ss_pred --------------------C-------------------CeEEEEecCHHHHHHHHHhcCCCcccC--cEEEEEEe
Q 026341 100 --------------------R-------------------NFAFVQFETQEEATKALESTDRSKLVD--RVISVEYA 135 (240)
Q Consensus 100 --------------------k-------------------g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a 135 (240)
. -||.|++.+.+.+......++|.++.. ..+.+.|.
T Consensus 219 ~~dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 219 GDDNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred CCccchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 0 178999999999999999999998865 45555554
No 211
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=62.20 E-value=4.2 Score=25.04 Aligned_cols=38 Identities=29% Similarity=0.369 Sum_probs=19.5
Q ss_pred CccceEEEEeCC-hhHHHHHHHhhCCCcccCCCceEEEEecc
Q 026341 6 HYAGFAFVYFED-DRDAADAIRGLDNIPFGYDRRRLSVEWAR 46 (240)
Q Consensus 6 ~~kG~aFV~F~~-~~~A~~A~~~l~g~~~~~~g~~l~v~~a~ 46 (240)
..+|||||...+ .+|.=-.-..|++.+ +|=.+.|....
T Consensus 6 ~~~GfGFv~~~~~~~DifIp~~~l~~A~---~gD~V~v~i~~ 44 (58)
T PF08206_consen 6 HPKGFGFVIPDDGGEDIFIPPRNLNGAM---DGDKVLVRITP 44 (58)
T ss_dssp -SSS-EEEEECT-TEEEEE-HHHHTTS----TT-EEEEEEEE
T ss_pred EcCCCEEEEECCCCCCEEECHHHHCCCC---CCCEEEEEEec
Confidence 468999999998 222222333455554 35566666554
No 212
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=62.03 E-value=9.9 Score=23.90 Aligned_cols=18 Identities=39% Similarity=0.517 Sum_probs=15.8
Q ss_pred EEEEeCChhHHHHHHHhh
Q 026341 11 AFVYFEDDRDAADAIRGL 28 (240)
Q Consensus 11 aFV~F~~~~~A~~A~~~l 28 (240)
|=|.|.+++.|.+|+.+|
T Consensus 45 cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 45 CNVVFKDEETAARALVAL 62 (62)
T ss_pred EEEEECCHHHHHHHHHcC
Confidence 678999999999999765
No 213
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=60.77 E-value=8.4 Score=27.58 Aligned_cols=33 Identities=12% Similarity=0.339 Sum_probs=18.9
Q ss_pred CCHHHHHHhhccCCCeEEEEE-----eCCeEEEEecCH
Q 026341 78 TRERDIKRHFEPYGNVLHVRI-----RRNFAFVQFETQ 110 (240)
Q Consensus 78 ~~~~~l~~~f~~~G~i~~~~~-----~kg~afV~f~~~ 110 (240)
.+.+.|.+.|..|..+.-..+ ..++++|+|...
T Consensus 29 ~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKD 66 (116)
T ss_dssp --SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SS
T ss_pred cCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCC
Confidence 355789999999987654333 357999999853
No 214
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=59.92 E-value=5.6 Score=33.46 Aligned_cols=6 Identities=50% Similarity=0.833 Sum_probs=2.2
Q ss_pred EEeCCh
Q 026341 13 VYFEDD 18 (240)
Q Consensus 13 V~F~~~ 18 (240)
|.|.++
T Consensus 26 v~~~D~ 31 (319)
T KOG0796|consen 26 VKFDDP 31 (319)
T ss_pred CCCCch
Confidence 333333
No 215
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=59.36 E-value=2.7 Score=35.46 Aligned_cols=36 Identities=22% Similarity=0.420 Sum_probs=31.3
Q ss_pred EEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCC
Q 026341 11 AFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 48 (240)
Q Consensus 11 aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~ 48 (240)
++|+|..+++|..||...+|+.+ +|+.|+..+...+
T Consensus 128 ~yITy~~~eda~rci~~v~g~~~--dg~~lka~~gttk 163 (327)
T KOG2068|consen 128 VYITYEEEEDADRCIDDVDGFVD--DGRALKASLGTTK 163 (327)
T ss_pred ccccccchHhhhhHHHHhhhHHh--hhhhhHHhhCCCc
Confidence 79999999999999999999998 7888877766643
No 216
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=59.04 E-value=14 Score=24.65 Aligned_cols=27 Identities=33% Similarity=0.632 Sum_probs=22.3
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCc
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIP 32 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~ 32 (240)
..+||-|||=.++.++..|+..+.+..
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CCceEEEEEeCCHHHHHHHHhccccee
Confidence 469999999999999999998666654
No 217
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=58.26 E-value=18 Score=22.68 Aligned_cols=18 Identities=17% Similarity=0.514 Sum_probs=15.4
Q ss_pred HHHHHhhccCCCeEEEEE
Q 026341 81 RDIKRHFEPYGNVLHVRI 98 (240)
Q Consensus 81 ~~l~~~f~~~G~i~~~~~ 98 (240)
++|+++|+..|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999876665
No 218
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=57.94 E-value=4.7 Score=36.44 Aligned_cols=19 Identities=37% Similarity=0.609 Sum_probs=16.5
Q ss_pred EEEeCChhHHHHHHHhhCC
Q 026341 12 FVYFEDDRDAADAIRGLDN 30 (240)
Q Consensus 12 FV~F~~~~~A~~A~~~l~g 30 (240)
||+|+++.||++|.+.|..
T Consensus 216 yITfesd~DAQqAykylre 234 (684)
T KOG2591|consen 216 YITFESDTDAQQAYKYLRE 234 (684)
T ss_pred EEEeecchhHHHHHHHHHH
Confidence 8999999999999886544
No 219
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=55.41 E-value=8 Score=36.85 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=37.0
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCC
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 48 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~ 48 (240)
..-..|.|+|...+.|..|+.+|+|+++..-|-+.+|-+|+.-
T Consensus 332 r~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 332 RDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred ccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3456799999999999999999999988666889999999843
No 220
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=54.53 E-value=17 Score=30.68 Aligned_cols=34 Identities=29% Similarity=0.257 Sum_probs=24.9
Q ss_pred EEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecC
Q 026341 103 AFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138 (240)
Q Consensus 103 afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 138 (240)
|||+|++..+|+.|++.+..... ..+.++.|-.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCCc
Confidence 79999999999999997655543 44466665443
No 221
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=54.21 E-value=17 Score=31.47 Aligned_cols=61 Identities=15% Similarity=0.255 Sum_probs=43.3
Q ss_pred CCEEEEeccCCCCCCHHHHHHhhccCC-CeEEEEEe----------CCeEEEEecCHHHHHHHHHhcCCCccc
Q 026341 65 TKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRIR----------RNFAFVQFETQEEATKALESTDRSKLV 126 (240)
Q Consensus 65 ~~~l~v~nl~~~~~~~~~l~~~f~~~G-~i~~~~~~----------kg~afV~f~~~~~a~~A~~~l~g~~~~ 126 (240)
-+.|.|.+| |...++++|.+....|- .+....+. -+.|||.|...++.+.-...++|..+.
T Consensus 7 ~~Kvv~rrl-pp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRL-PPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecC-CCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 356778899 66788888877776654 23333332 357999999999988888888887553
No 222
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=54.07 E-value=6.6 Score=37.32 Aligned_cols=29 Identities=48% Similarity=0.674 Sum_probs=16.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccCC
Q 026341 211 DRRRSPDYGRNRSPNFGRYRSRSPVRRSR 239 (240)
Q Consensus 211 ~~~r~~~~~rs~s~~~~r~rsrs~~~~~r 239 (240)
++-|+|.+.|++-+++.|-+.++|.|+.|
T Consensus 334 ~RERspqr~rsr~rs~rRErer~prRr~R 362 (1194)
T KOG4246|consen 334 DRERSPQRERSRQRSRRRERERIPRRRER 362 (1194)
T ss_pred hhhcccccccccccccchhhhcchHhhhh
Confidence 33445555555555566666667776654
No 223
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=51.96 E-value=48 Score=25.27 Aligned_cols=46 Identities=17% Similarity=0.136 Sum_probs=37.0
Q ss_pred ccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEecCHHHHHHHHHhc
Q 026341 72 NFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALEST 120 (240)
Q Consensus 72 nl~~~~~~~~~l~~~f~~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l 120 (240)
+| +..+.++-|.++.+-+|-|... -...-.+.|.+.+..+.|++.|
T Consensus 118 ~l-~~~i~~erl~ei~E~~gvI~Ef--ee~~~V~I~Gdke~Ik~aLKe~ 163 (169)
T PF09869_consen 118 KL-KKPIQEERLQEISEWHGVIFEF--EEDDKVVIEGDKERIKKALKEF 163 (169)
T ss_pred ec-CccchHHHHHHHHHHhceeEEe--cCCcEEEEeccHHHHHHHHHHH
Confidence 56 7789999999999999977655 3445577889999999999865
No 224
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=51.41 E-value=52 Score=22.07 Aligned_cols=45 Identities=24% Similarity=0.357 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHhhcc-CC-CeEEEEE---eCC--eEEEEecCHHHHHHHHHh
Q 026341 75 PIRTRERDIKRHFEP-YG-NVLHVRI---RRN--FAFVQFETQEEATKALES 119 (240)
Q Consensus 75 ~~~~~~~~l~~~f~~-~G-~i~~~~~---~kg--~afV~f~~~~~a~~A~~~ 119 (240)
....+..+|++.++. || .|..|.. +.+ -|||.+.....|.+....
T Consensus 29 ~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 29 DRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 447888999998886 56 5666654 333 699999988888876543
No 225
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=50.57 E-value=11 Score=31.98 Aligned_cols=10 Identities=40% Similarity=0.880 Sum_probs=4.3
Q ss_pred HHHHHhhccC
Q 026341 81 RDIKRHFEPY 90 (240)
Q Consensus 81 ~~l~~~f~~~ 90 (240)
.+|...|+.|
T Consensus 172 ~dLw~WyEpy 181 (453)
T KOG2888|consen 172 ADLWDWYEPY 181 (453)
T ss_pred hHHHHHhhhh
Confidence 4444444433
No 226
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=49.08 E-value=46 Score=21.56 Aligned_cols=39 Identities=15% Similarity=0.423 Sum_probs=28.9
Q ss_pred hhccCCCeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcc
Q 026341 86 HFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125 (240)
Q Consensus 86 ~f~~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~ 125 (240)
.+.+||.|..+.-...|+ |-|-+.++++..++.|....+
T Consensus 16 ~L~kfG~i~Y~Skk~kYv-vlYvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 16 QLRKFGDIHYVSKKMKYV-VLYVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred hHhhcccEEEEECCccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 356899998876555566 447788999999988876554
No 227
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=48.50 E-value=48 Score=25.70 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=32.3
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccC
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 47 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~ 47 (240)
++.++--|-|.+++.|..|..++++..|. ++..++.-++..
T Consensus 49 rsfrrvRi~f~~p~~a~~a~i~~~~~~f~-~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 49 RSFRRVRINFSNPEAAADARIKLHSTSFN-GKNELKLYFAQP 89 (193)
T ss_pred HhhceeEEeccChhHHHHHHHHhhhcccC-CCceEEEEEccC
Confidence 34566678999999999999999999995 333777777764
No 228
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=48.28 E-value=65 Score=21.18 Aligned_cols=50 Identities=22% Similarity=0.304 Sum_probs=34.1
Q ss_pred EEeccCCCCCCHHHHHHhhcc-CC-CeEEEEE---eCC--eEEEEecCHHHHHHHHHh
Q 026341 69 FVINFDPIRTRERDIKRHFEP-YG-NVLHVRI---RRN--FAFVQFETQEEATKALES 119 (240)
Q Consensus 69 ~v~nl~~~~~~~~~l~~~f~~-~G-~i~~~~~---~kg--~afV~f~~~~~a~~A~~~ 119 (240)
|+..+ +...+..+|++.++. |+ +|..|.. +.+ -|||.+.....|.+.-..
T Consensus 17 y~F~V-~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 17 LTFIV-DRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEE-CCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 34444 457889999988886 55 5555554 233 599999887777776543
No 229
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=48.10 E-value=4.3 Score=33.05 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=24.2
Q ss_pred eEEEEeCChhHHHHHHHhhCCCcccCCCce
Q 026341 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRR 39 (240)
Q Consensus 10 ~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~ 39 (240)
-|+|||.+...|..+...||+..| +|++
T Consensus 130 EGWvEF~~KrvAK~iAe~Lnn~~I--ggkk 157 (278)
T KOG3152|consen 130 EGWVEFISKRVAKRIAELLNNTPI--GGKK 157 (278)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCcc--CCCC
Confidence 478999999999999999999999 4553
No 230
>KOG4357 consensus Uncharacterized conserved protein (involved in mesoderm differentiation in humans) [General function prediction only]
Probab=47.72 E-value=1.1e+02 Score=22.23 Aligned_cols=63 Identities=25% Similarity=0.265 Sum_probs=41.0
Q ss_pred CCEEEEeccCCCCCCHHHH-------HH-----hhccCCCeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcccC
Q 026341 65 TKTLFVINFDPIRTRERDI-------KR-----HFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 127 (240)
Q Consensus 65 ~~~l~v~nl~~~~~~~~~l-------~~-----~f~~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~~g 127 (240)
+-.|||+-..|...++.++ .+ +|...-.+....|--.-|+..|.+-+.|-+|...|-|+.++.
T Consensus 66 tlmlfv~v~~psqp~~kd~rpftee~tqiwq~qlfn~~~dlq~fii~ddraifm~kdge~a~e~k~fll~qd~~a 140 (164)
T KOG4357|consen 66 TLMLFVGVSDPSQPDEKDIRPFTEEITQIWQGQLFNAHVDLQRFIIDDDRAIFMFKDGEQAFEAKDFLLGQDFCA 140 (164)
T ss_pred eEEEEEEecCCCCCChhhccchhHHHHHHHHHHhhccccceEEEEecCCeEEEEEeChhHHHHHHHHhhccchhe
Confidence 4567777665544454444 22 233333444444456678889999999999999888877653
No 231
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=46.66 E-value=13 Score=30.03 Aligned_cols=35 Identities=26% Similarity=0.507 Sum_probs=29.1
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI 98 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~ 98 (240)
....+||+-|+ |..++++.|..+..+.|-+..+.+
T Consensus 38 ~eKd~lfl~Nv-p~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNV-PLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccceeeecc-cccccHHHHHHHHHHhhhhhheec
Confidence 34678999999 888999999999999986666555
No 232
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=45.62 E-value=26 Score=22.44 Aligned_cols=55 Identities=22% Similarity=0.295 Sum_probs=35.1
Q ss_pred HHHHHhhccCC-CeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecC
Q 026341 81 RDIKRHFEPYG-NVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138 (240)
Q Consensus 81 ~~l~~~f~~~G-~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 138 (240)
++|.+.|...| +|..+.-+ -..-||+++...+..+ .++=+.+++..|.|+.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 45667777777 66665542 2467788776555333 34456788899998876543
No 233
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=44.18 E-value=2.8e+02 Score=26.07 Aligned_cols=7 Identities=0% Similarity=0.382 Sum_probs=3.2
Q ss_pred EEEEecc
Q 026341 67 TLFVINF 73 (240)
Q Consensus 67 ~l~v~nl 73 (240)
.|.|..+
T Consensus 41 SiViSDV 47 (1027)
T KOG3580|consen 41 SIVISDV 47 (1027)
T ss_pred eEEEeec
Confidence 4444444
No 234
>PF14268 YoaP: YoaP-like
Probab=41.79 E-value=11 Score=21.98 Aligned_cols=36 Identities=11% Similarity=0.127 Sum_probs=28.1
Q ss_pred EEEEeCChhHHHHHHHhhCCCcccCCCceEEEEecc
Q 026341 11 AFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 46 (240)
Q Consensus 11 aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~ 46 (240)
-+|..++.|+|+.|=.-.+..-|+++|+-|.++...
T Consensus 3 ~~i~i~t~e~Aq~~P~pft~yalFYnGkfiT~eils 38 (44)
T PF14268_consen 3 KLIKIDTLEKAQNAPCPFTTYALFYNGKFITNEILS 38 (44)
T ss_pred EEEEeccHHHHhcCCCceeEEEEEECCEEEEeeccC
Confidence 478899999998887767776666689988887643
No 235
>PRK02886 hypothetical protein; Provisional
Probab=40.69 E-value=67 Score=21.71 Aligned_cols=52 Identities=15% Similarity=0.296 Sum_probs=34.9
Q ss_pred CCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcc
Q 026341 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125 (240)
Q Consensus 65 ~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~ 125 (240)
+-.||+.++ - ++ ..+.+||.|..+.-...|+ |-|-+.++|++.++.|....+
T Consensus 7 glIVyl~~~-k------~~-r~LrkyG~I~Y~Skr~kYv-vlYvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 7 GIIVWLHSL-K------QA-KQLRKFGNVHYVSKRLKYA-VLYCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred EEEEEEeec-H------hH-HHHhhcCcEEEEeccccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 456677666 2 11 2356899998876545565 447788999999988876554
No 236
>PRK02302 hypothetical protein; Provisional
Probab=40.42 E-value=68 Score=21.78 Aligned_cols=52 Identities=19% Similarity=0.389 Sum_probs=35.0
Q ss_pred CCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcc
Q 026341 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 125 (240)
Q Consensus 65 ~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~ 125 (240)
+-.||+..+ - ++ ..+.+||.|.++.-...|+ |-|-+.++|++.++.|....+
T Consensus 9 glIVyl~~~-k------~~-r~LrkfG~I~Y~Skk~kYv-vlYvn~~~~e~~~~kl~~l~f 60 (89)
T PRK02302 9 GLIVYLYYN-R------DA-RKLSKYGDIVYHSKRSRYL-VLYVNKEDVEQKLEELSKLKF 60 (89)
T ss_pred EEEEEEeec-H------hH-HHHhhcCcEEEEeccccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 456677666 2 11 2356899998876555566 447788999999988876554
No 237
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.24 E-value=45 Score=30.61 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=28.5
Q ss_pred eEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEec
Q 026341 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 45 (240)
Q Consensus 10 ~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a 45 (240)
||.|+|.+.+.|.+....++|..|---+..|-+.|.
T Consensus 270 yAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 270 YAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred EEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 799999999999999999999999433444554443
No 238
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=39.83 E-value=17 Score=32.43 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=32.1
Q ss_pred ceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 9 G~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
--|.|+|.+..+|-.|.. .++..| +++.|+|-|.++..
T Consensus 410 ~~a~vTF~t~aeag~a~~-s~~avl--nnr~iKl~whnps~ 447 (526)
T KOG2135|consen 410 LHAVVTFKTRAEAGEAYA-SHGAVL--NNRFIKLFWHNPSP 447 (526)
T ss_pred hhheeeeeccccccchhc-ccccee--cCceeEEEEecCCc
Confidence 358999999999977776 788888 69999999998744
No 239
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=38.90 E-value=1e+02 Score=19.62 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.9
Q ss_pred ceEEEEeCChhHHHHHHHhhCCCcc
Q 026341 9 GFAFVYFEDDRDAADAIRGLDNIPF 33 (240)
Q Consensus 9 G~aFV~F~~~~~A~~A~~~l~g~~~ 33 (240)
.+++|.|.+..+|.+|-+.|....+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 5789999999999999998877765
No 240
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=38.73 E-value=1e+02 Score=21.32 Aligned_cols=45 Identities=11% Similarity=0.279 Sum_probs=35.8
Q ss_pred HHHHHHhhccCC-CeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCc
Q 026341 80 ERDIKRHFEPYG-NVLHVRIRRNFAFVQFETQEEATKALESTDRSK 124 (240)
Q Consensus 80 ~~~l~~~f~~~G-~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~ 124 (240)
...+.+.+..-| .++.+....+...|.|.+.++-..|.+.|....
T Consensus 48 ~~~v~~~L~~~~I~~k~i~~~~~~llirf~~~~~Ql~Ak~~L~~~L 93 (101)
T PF13721_consen 48 AFQVEQALKAAGIAVKSIEQEGDSLLIRFDSTDQQLKAKDVLSKAL 93 (101)
T ss_pred HHHHHHHHHHCCCCcceEEeeCCEEEEEECCHHHHHHHHHHHHHHc
Confidence 358888888888 677788788899999999998888877665543
No 241
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=38.65 E-value=5.3 Score=36.14 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=48.4
Q ss_pred CCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCc
Q 026341 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDR 128 (240)
Q Consensus 65 ~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~ 128 (240)
.++|++.|+ +.+++-++|..++..+-.+..+.+. ..+++|+|.---....|+.+||+..+.-.
T Consensus 231 e~sll~rni-~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 231 ECSLLVRNI-LPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHhcc-CCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 577999999 6689999999999988777776663 34688889877777777777777655443
No 242
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=38.00 E-value=12 Score=32.96 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=21.0
Q ss_pred cceEEEEeCChhHHHHHHHhhCCC
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNI 31 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~ 31 (240)
+-+|||||+..+.|++|.+.|+..
T Consensus 286 k~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 286 KECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred hhhhhhhhhhhHHHHHHHHhhchh
Confidence 678999999999999999977543
No 243
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=37.74 E-value=18 Score=26.67 Aligned_cols=55 Identities=15% Similarity=0.264 Sum_probs=37.7
Q ss_pred HHHHHhhccCCCeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEee
Q 026341 81 RDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136 (240)
Q Consensus 81 ~~l~~~f~~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 136 (240)
+.|..+....|.+.-..+..++..+.|.+++++..++.. ....+.|..|.++.-.
T Consensus 36 ~~l~~~W~~~~~~~i~~l~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 36 QELAKIWKLKGGVKIRDLGDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWS 90 (153)
T ss_pred HHHHHHhCCCCcEEEEEeCCCeEEEEEEeccceeEEEec-ccccccccchhhhhhc
Confidence 334444445567777777889999999999999998863 3345666655554443
No 244
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=37.63 E-value=55 Score=27.41 Aligned_cols=71 Identities=13% Similarity=0.251 Sum_probs=51.5
Q ss_pred CCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEeC---------------CeEEEEecCHHHHHHHHHh----cC--CC
Q 026341 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR---------------NFAFVQFETQEEATKALES----TD--RS 123 (240)
Q Consensus 65 ~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~k---------------g~afV~f~~~~~a~~A~~~----l~--g~ 123 (240)
++.|.+.|| ...++--.+...|-+||+|+.|.+.. ....+.|-+.+.+...... |. .+
T Consensus 15 TRSLLfeNv-~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 15 TRSLLFENV-NNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eHHHHHhhc-cccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 567888999 67788888888899999999999942 3578889888877654332 21 13
Q ss_pred cccCcEEEEEEee
Q 026341 124 KLVDRVISVEYAL 136 (240)
Q Consensus 124 ~~~g~~l~v~~a~ 136 (240)
.+.-..|.|.|..
T Consensus 94 ~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 94 KLKSESLTLSFVS 106 (309)
T ss_pred hcCCcceeEEEEE
Confidence 4556677777765
No 245
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=37.26 E-value=1.3e+02 Score=20.29 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=30.1
Q ss_pred HHHHHHhhccCC-CeEEEEEeCC----eEEEEecCHHHHHHHHHhc
Q 026341 80 ERDIKRHFEPYG-NVLHVRIRRN----FAFVQFETQEEATKALEST 120 (240)
Q Consensus 80 ~~~l~~~f~~~G-~i~~~~~~kg----~afV~f~~~~~a~~A~~~l 120 (240)
.+.+.++++.+| ++..+.+..| +..+++.+.+.|.++...+
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHH
Confidence 356777787776 7887777654 6778899988888776544
No 246
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=37.08 E-value=1.6e+02 Score=27.38 Aligned_cols=92 Identities=12% Similarity=0.174 Sum_probs=52.8
Q ss_pred eEEEEeCChhHHHHHHHhhCCCcccCCCceEE-------------EEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCC
Q 026341 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLS-------------VEWARGERGRHRDGSKSMANQRPTKTLFVINFDPI 76 (240)
Q Consensus 10 ~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~-------------v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~ 76 (240)
-|||++.++...+-..+.|+-..++ .|.--- |.|+....-+ -...........||+.+| .-
T Consensus 238 ~C~iT~Tn~~TH~iIr~Nl~rSpmy-sG~Ieg~GPRYCPSIEDKIvrF~dK~~Hq----IFlEPEGl~~~evY~nGl-ST 311 (621)
T COG0445 238 PCYITYTNEKTHEIIRDNLHRSPMY-SGEIEGVGPRYCPSIEDKIVRFADKERHQ----IFLEPEGLDTDEVYPNGL-ST 311 (621)
T ss_pred ceeeecCChHHHHHHHHhhhhCchh-cccccccCCCCCCCHHHhhccCCCCccce----EEecCCCCCCceEecCcc-cc
Confidence 5999999999888777777777664 332211 1122211100 001123444778999999 55
Q ss_pred CCCHHHHHHhhccCCCeEEEEEeC-CeEEEEec
Q 026341 77 RTRERDIKRHFEPYGNVLHVRIRR-NFAFVQFE 108 (240)
Q Consensus 77 ~~~~~~l~~~f~~~G~i~~~~~~k-g~afV~f~ 108 (240)
...++.-.++....-.+..+.|.+ ||| |||+
T Consensus 312 SlP~dVQ~~~irsipGlEna~i~rpgYA-IEYD 343 (621)
T COG0445 312 SLPEDVQEQIIRSIPGLENAEILRPGYA-IEYD 343 (621)
T ss_pred cCCHHHHHHHHHhCcccccceeecccee-eeec
Confidence 565555555666666677777754 555 4443
No 247
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=36.46 E-value=1.1e+02 Score=22.86 Aligned_cols=31 Identities=10% Similarity=0.280 Sum_probs=24.5
Q ss_pred eEEEEEe---CCeEEEEecCHHHHHHHHHhcCCC
Q 026341 93 VLHVRIR---RNFAFVQFETQEEATKALESTDRS 123 (240)
Q Consensus 93 i~~~~~~---kg~afV~f~~~~~a~~A~~~l~g~ 123 (240)
|..+.++ .||.||+....+++..++..+.+.
T Consensus 36 i~~i~vp~~fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAILAPPELKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEEccCCCCcEEEEEEEChHHHHHHHhcCCCE
Confidence 5566554 799999999889999999877653
No 248
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=36.32 E-value=79 Score=25.71 Aligned_cols=93 Identities=16% Similarity=0.269 Sum_probs=48.4
Q ss_pred hhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCC---HHHHHHhhccCC-CeEEEEEe---
Q 026341 27 GLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTR---ERDIKRHFEPYG-NVLHVRIR--- 99 (240)
Q Consensus 27 ~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~---~~~l~~~f~~~G-~i~~~~~~--- 99 (240)
.+-|+.|.++++.+.|.|..... ....|||++|...-.+ .+.|-..+.+.+ .+..+.+.
T Consensus 13 ~~rgvlF~y~~Ks~~va~~~gv~--------------~~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy 78 (299)
T KOG4840|consen 13 ELRGVLFVYDSKSSLVAYSNGVE--------------SVKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSY 78 (299)
T ss_pred heeeeEEEecCccceeeeccCce--------------EEEEEEEcccCCCccccccHHHHHHHHhhccceeeeeeccccc
Confidence 34555555566666666666332 2578999998322111 234444444333 44444442
Q ss_pred CCeEEEEe-cCHHHHHHHHHhcCCCcccCcEEEEE
Q 026341 100 RNFAFVQF-ETQEEATKALESTDRSKLVDRVISVE 133 (240)
Q Consensus 100 kg~afV~f-~~~~~a~~A~~~l~g~~~~g~~l~v~ 133 (240)
.||+.-.. .+.++...+++.+.+..+.-..+-|-
T Consensus 79 ~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL~G 113 (299)
T KOG4840|consen 79 NGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVLVG 113 (299)
T ss_pred cccccccccccHHHHHHHHHHhhccCcccceEEEe
Confidence 34544333 35677777777665554433333333
No 249
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=34.95 E-value=37 Score=25.43 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=21.5
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCc
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIP 32 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~ 32 (240)
.+||-||+....+++..++..+.+..
T Consensus 45 fpGYVfVe~~~~~~~~~~i~~v~~v~ 70 (153)
T PRK08559 45 LKGYVLVEAESKGAVEEAIRGIPHVR 70 (153)
T ss_pred CCcEEEEEEEChHHHHHHHhcCCCEe
Confidence 48999999998888888988776643
No 250
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=34.27 E-value=1.5e+02 Score=25.28 Aligned_cols=106 Identities=16% Similarity=0.121 Sum_probs=58.8
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCC-CCCCCCCCCCCEEEEeccCCCCCC------
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDG-SKSMANQRPTKTLFVINFDPIRTR------ 79 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~-~~~~~~~~~~~~l~v~nl~~~~~~------ 79 (240)
.+-||+|...-..|- ..+.+.|..-+ +|-.|.|.-+...-.+..+- ....+...|.-.+|+..+ . .++
T Consensus 74 ~rhyahVDcPGHaDY--vKNMItgAaqm-DgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~-D-mvdd~elle 148 (394)
T COG0050 74 NRHYAHVDCPGHADY--VKNMITGAAQM-DGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKV-D-MVDDEELLE 148 (394)
T ss_pred CceEEeccCCChHHH--HHHHhhhHHhc-CccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecc-c-ccCcHHHHH
Confidence 477888877666554 44445554433 67777777666443332221 112234445556676665 3 343
Q ss_pred --HHHHHHhhccCC-CeEEEEEeCCeEEEEecCHHHHHHHH
Q 026341 80 --ERDIKRHFEPYG-NVLHVRIRRNFAFVQFETQEEATKAL 117 (240)
Q Consensus 80 --~~~l~~~f~~~G-~i~~~~~~kg~afV~f~~~~~a~~A~ 117 (240)
+.+++++++.|| +-..+-|.+|.|+-..+..+...++|
T Consensus 149 lVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i 189 (394)
T COG0050 149 LVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKI 189 (394)
T ss_pred HHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHH
Confidence 346778888887 33455566777776666443343333
No 251
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=34.05 E-value=50 Score=31.83 Aligned_cols=19 Identities=47% Similarity=0.553 Sum_probs=11.1
Q ss_pred CCCCCCCCCCCCCCCCCcc
Q 026341 218 YGRNRSPNFGRYRSRSPVR 236 (240)
Q Consensus 218 ~~rs~s~~~~r~rsrs~~~ 236 (240)
++|-|||-+.|++.||++|
T Consensus 333 r~RERspqr~rsr~rs~rR 351 (1194)
T KOG4246|consen 333 RDRERSPQRERSRQRSRRR 351 (1194)
T ss_pred hhhhcccccccccccccch
Confidence 3455566666666666654
No 252
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=33.05 E-value=39 Score=26.06 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=28.5
Q ss_pred ceEEEEeCChhHHHHHHHhhCCCcccCCC----ceEEEEeccC
Q 026341 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDR----RRLSVEWARG 47 (240)
Q Consensus 9 G~aFV~F~~~~~A~~A~~~l~g~~~~~~g----~~l~v~~a~~ 47 (240)
.-|+|.|.+.+++...+..++|..|. +. ....|++|.-
T Consensus 56 SRaYi~F~~~~~~~~F~~~~~g~~F~-D~kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 56 SRAYINFKNPEDLLEFRDRFDGHVFV-DSKGNEYPAVVEFAPY 97 (176)
T ss_dssp EEEEEEESSCHHHHHHHHHCTTEEEE--TTS-EEEEEEEE-SS
T ss_pred eEEEEEeCCHHHHHHHHHhcCCcEEE-CCCCCCcceeEEEcch
Confidence 45899999999999999999998773 22 3456777764
No 253
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=32.76 E-value=57 Score=20.97 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=34.0
Q ss_pred HHHHHhhccCC-CeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEee
Q 026341 81 RDIKRHFEPYG-NVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136 (240)
Q Consensus 81 ~~l~~~f~~~G-~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 136 (240)
++|.+.|...| ++..+..+ -..-+|+.....+... .|+=+.|+|+.|.|+-..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46777777777 67666653 2356777665543333 345567888998887654
No 254
>PF09341 Pcc1: Transcription factor Pcc1; InterPro: IPR015419 Pcc1 is a proposed transcription factor involved in the expression of genes regulated by alpha-factor and galactose; component of the EKC/KEOPS protein complex with Kae1, Gon7, Bud32, and Cgi121; related to human cancer-testis antigens [].; PDB: 2BNR_C 2P5W_C 3KLA_C 2F54_C 2P5E_C 2F53_C 3ENO_E 3ENC_B.
Probab=31.52 E-value=64 Score=20.79 Aligned_cols=38 Identities=18% Similarity=0.024 Sum_probs=22.1
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEecc
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 46 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~ 46 (240)
...+-|.|.++++|+.|+..|.--... .+..+.+++..
T Consensus 2 ~~~l~i~f~s~~~A~ii~~sL~~d~e~-~~~~~~~~~~~ 39 (76)
T PF09341_consen 2 SFTLEIPFESEEKAEIIYRSLKPDKEL-KPSRVKRELSV 39 (76)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHHHHH--SS-SSEEEEEE
T ss_pred EEEEEEEeCCHHHHHHHHHHhCCCCCC-CCCcEEEEEEE
Confidence 345779999999999988866432221 33444444444
No 255
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=30.66 E-value=76 Score=21.49 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=24.3
Q ss_pred EEEEeCChhHHHHHHHhhCCCcccCCCceEEEEec
Q 026341 11 AFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 45 (240)
Q Consensus 11 aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a 45 (240)
.++-|-+..++..||..++.++...+|.+|.|-..
T Consensus 46 ~a~FfV~D~~tA~aLk~vsrkI~~~dg~Ki~I~V~ 80 (88)
T PF09162_consen 46 RAQFFVEDASTASALKDVSRKICDEDGFKISIFVN 80 (88)
T ss_dssp EEEEEESSHHHHHHHHTTTTTEEBTTSBEE--EEE
T ss_pred EEEEEeCCHHHHHHHHHCCCceECCCCCEEEEEEc
Confidence 45556677778889998988877667887766543
No 256
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=30.50 E-value=1.3e+02 Score=18.11 Aligned_cols=52 Identities=15% Similarity=0.275 Sum_probs=35.0
Q ss_pred EEEEeccCCCCCCHHHHHHhhccCCCeEEEEE--eCCeEEEEecCH----HHHHHHHHh
Q 026341 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQ----EEATKALES 119 (240)
Q Consensus 67 ~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~--~kg~afV~f~~~----~~a~~A~~~ 119 (240)
++.|.|+ .-.--...|.+.+...-.|..+.+ ..+.+-|.|... ++..++|+.
T Consensus 1 t~~v~~m-~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGM-TCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEEST-TSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCc-ccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 4677777 322225678888888877877776 468888888744 555566654
No 257
>PRK09756 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=29.93 E-value=1.6e+02 Score=22.29 Aligned_cols=16 Identities=6% Similarity=0.210 Sum_probs=8.1
Q ss_pred EEEEeCChhHHHHHHH
Q 026341 11 AFVYFEDDRDAADAIR 26 (240)
Q Consensus 11 aFV~F~~~~~A~~A~~ 26 (240)
.||-|.++++|.++++
T Consensus 82 vlvl~~~~~da~~l~~ 97 (158)
T PRK09756 82 IFLICRTPQTVRKLVE 97 (158)
T ss_pred EEEEECCHHHHHHHHH
Confidence 4555555555555444
No 258
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=29.47 E-value=1.1e+02 Score=23.85 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=29.2
Q ss_pred CCHHHHHHhhccC-CCeEEEEE---------eCCeEEEEecCHHHHHHHHHh
Q 026341 78 TRERDIKRHFEPY-GNVLHVRI---------RRNFAFVQFETQEEATKALES 119 (240)
Q Consensus 78 ~~~~~l~~~f~~~-G~i~~~~~---------~kg~afV~f~~~~~a~~A~~~ 119 (240)
.+++.|..+.... |++..|.+ .+|-.||+|.+.++|.++++.
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 4444444444322 67887776 258899999999999987764
No 259
>PRK11901 hypothetical protein; Reviewed
Probab=28.84 E-value=2.1e+02 Score=24.52 Aligned_cols=53 Identities=17% Similarity=0.282 Sum_probs=34.2
Q ss_pred CEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE----eC---CeEEE--EecCHHHHHHHHHhcCCC
Q 026341 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI----RR---NFAFV--QFETQEEATKALESTDRS 123 (240)
Q Consensus 66 ~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~----~k---g~afV--~f~~~~~a~~A~~~l~g~ 123 (240)
.+|.|..+ ..++.|..|..+++ +..+++ .. .|.+| .|.+.++|..|+..|-..
T Consensus 246 YTLQL~Aa----s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 246 YTLQLSSA----SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred eEEEeecC----CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHH
Confidence 45555544 44777888777765 333333 12 25444 589999999999988653
No 260
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=28.02 E-value=60 Score=23.93 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=20.9
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCc
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIP 32 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~ 32 (240)
.+||-||++....+...++..+.|..
T Consensus 37 fpGYvFV~~~~~~~~~~~i~~~~gv~ 62 (145)
T TIGR00405 37 LKGYILVEAETKIDMRNPIIGVPHVR 62 (145)
T ss_pred CCcEEEEEEECcHHHHHHHhCCCCEE
Confidence 48999999998877778887776643
No 261
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=27.81 E-value=1.7e+02 Score=18.69 Aligned_cols=39 Identities=18% Similarity=0.327 Sum_probs=28.4
Q ss_pred HHHHHhhccCCCeEEEEEe----CCeEEEEecCHHHHHHHHHhc
Q 026341 81 RDIKRHFEPYGNVLHVRIR----RNFAFVQFETQEEATKALEST 120 (240)
Q Consensus 81 ~~l~~~f~~~G~i~~~~~~----kg~afV~f~~~~~a~~A~~~l 120 (240)
.+|.+.+..+| +....+. -++.|+.+.+.+.++++++.|
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHH
Confidence 56677778888 5555553 457888888999888887765
No 262
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=27.07 E-value=75 Score=21.68 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=19.5
Q ss_pred cceEEEEeCChhHHHHHHHhhCC
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDN 30 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g 30 (240)
+.+|-|+|.+.+.+..|...|-.
T Consensus 51 ~pm~vv~f~~~~~g~~~yq~Lre 73 (91)
T PF12829_consen 51 RPMCVVNFPNYEVGVSAYQKLRE 73 (91)
T ss_pred eEeEEEECCChHHHHHHHHHHHH
Confidence 67999999999999998876543
No 263
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.80 E-value=2e+02 Score=26.89 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=47.1
Q ss_pred cceEEEEeCChhHHHHHHHhhCC------CcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHH
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDN------IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRER 81 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g------~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~ 81 (240)
.||-++.+....-++..+..+.. ......|++|.|+|..++. +.-++||+| -..+=-+
T Consensus 81 pgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNp---------------tkplHiGHl-R~aiiGD 144 (577)
T COG0018 81 PGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANP---------------TGPLHIGHL-RNAIIGD 144 (577)
T ss_pred CCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCC---------------CCCcccchh-hhhHHHH
Confidence 35555555544444444444441 2222257899999998644 556899999 6666667
Q ss_pred HHHHhhccCC-CeEEEEE
Q 026341 82 DIKRHFEPYG-NVLHVRI 98 (240)
Q Consensus 82 ~l~~~f~~~G-~i~~~~~ 98 (240)
-|-.++...| .|+....
T Consensus 145 sLaril~~~Gy~V~r~~y 162 (577)
T COG0018 145 SLARILEFLGYDVTRENY 162 (577)
T ss_pred HHHHHHHHcCCCeeEEee
Confidence 7888888888 5655544
No 264
>PRK15464 cold shock-like protein CspH; Provisional
Probab=26.41 E-value=48 Score=21.32 Aligned_cols=48 Identities=10% Similarity=-0.015 Sum_probs=28.0
Q ss_pred CCCeEEEEEeCCeEEEEecCH-HHHH---HHHHhcCC--CcccCcEEEEEEeecC
Q 026341 90 YGNVLHVRIRRNFAFVQFETQ-EEAT---KALESTDR--SKLVDRVISVEYALKD 138 (240)
Q Consensus 90 ~G~i~~~~~~kg~afV~f~~~-~~a~---~A~~~l~g--~~~~g~~l~v~~a~~~ 138 (240)
.|.|+...-.+||+||+=.+- +++- .||.. ++ ....|..|..++....
T Consensus 6 ~G~Vk~fn~~KGfGFI~~~~g~~DvFvH~s~l~~-~g~~~l~~G~~V~f~v~~~~ 59 (70)
T PRK15464 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTP-RDAEVLIPGLRVEFCRVNGL 59 (70)
T ss_pred eEEEEEEECCCCeEEEccCCCCccEEEEehhehh-cCCCCCCCCCEEEEEEEECC
Confidence 477777777899999975542 2221 12221 22 2345777777776644
No 265
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=26.22 E-value=53 Score=20.82 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=28.6
Q ss_pred CCCeEEEEEeCCeEEEEecC-HHHHHHHHHhc--CC--CcccCcEEEEEEeecC
Q 026341 90 YGNVLHVRIRRNFAFVQFET-QEEATKALEST--DR--SKLVDRVISVEYALKD 138 (240)
Q Consensus 90 ~G~i~~~~~~kg~afV~f~~-~~~a~~A~~~l--~g--~~~~g~~l~v~~a~~~ 138 (240)
.|.|+.....+||+||+=.+ .+++--=+..+ .+ ..-.|..|..++....
T Consensus 3 ~G~Vk~f~~~kGfGFI~~~~g~~dvfvH~s~~~~~g~~~l~~G~~V~f~~~~~~ 56 (68)
T TIGR02381 3 IGIVKWFNNAKGFGFICPEGVDGDIFAHYSTIQMDGYRTLKAGQKVQFEVVQGP 56 (68)
T ss_pred CeEEEEEeCCCCeEEEecCCCCccEEEEHHHhhhcCCCCCCCCCEEEEEEEECC
Confidence 47788888889999997655 22222112222 22 2345777777766554
No 266
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=26.18 E-value=44 Score=18.47 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=10.3
Q ss_pred CCCCHHHHHHhhccCCC
Q 026341 76 IRTRERDIKRHFEPYGN 92 (240)
Q Consensus 76 ~~~~~~~l~~~f~~~G~ 92 (240)
..+++++|+++|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 46889999999987653
No 267
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=25.97 E-value=2.7e+02 Score=20.38 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=34.5
Q ss_pred ceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEecc
Q 026341 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINF 73 (240)
Q Consensus 9 G~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl 73 (240)
.+-+..+.+.. ...++..|.+..+ .|++|.|....... ....+..|||+.-
T Consensus 27 ~~~icv~g~~~-~~~~L~~l~~~~~--~~~~i~v~~~~~~~-----------~~~~C~ilyi~~~ 77 (145)
T PF13689_consen 27 PFRICVLGDDP-FAEALSTLAGKQV--GGRPIRVRRLSSPN-----------EISGCHILYISSS 77 (145)
T ss_pred CeEEEEECChH-HHHHHHHhhhccc--CCCcEEEEECCCCc-----------ccccccEEEECCC
Confidence 34455555555 4457888888888 69999998664221 2345889999876
No 268
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=25.56 E-value=1.5e+02 Score=17.43 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=30.0
Q ss_pred CEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEecCHHH
Q 026341 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEE 112 (240)
Q Consensus 66 ~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~kg~afV~f~~~~~ 112 (240)
..++|.+. ......++|.+++..+|....-.+....-+|.+.+...
T Consensus 2 ~~~~i~g~-~~~~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~ 47 (72)
T cd00027 2 LTFVITGD-LPSEERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAG 47 (72)
T ss_pred CEEEEEec-CCCcCHHHHHHHHHHcCCEEeccccCCceEEEECCCCC
Confidence 35677776 33678899999999998654444444555555554433
No 269
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.98 E-value=11 Score=33.19 Aligned_cols=68 Identities=4% Similarity=-0.072 Sum_probs=51.6
Q ss_pred EEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeec
Q 026341 68 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 137 (240)
Q Consensus 68 l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 137 (240)
.++..+ +..+++.++.-+|..||-|..+.+. +-.+||+-.+ .+|..+|+.+..+.+.|..+.|.++..
T Consensus 6 ~~l~d~-~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 6 KSLKDS-VASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhHhhc-ccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 455667 7778889999999999999888773 2356666543 567788887777888888888888764
No 270
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=24.84 E-value=58 Score=20.19 Aligned_cols=20 Identities=15% Similarity=0.363 Sum_probs=14.8
Q ss_pred CCeEEEEEeCCeEEEEecCH
Q 026341 91 GNVLHVRIRRNFAFVQFETQ 110 (240)
Q Consensus 91 G~i~~~~~~kg~afV~f~~~ 110 (240)
|.|......+||+||+-.+.
T Consensus 3 G~V~~~~~~kgyGFI~~~~~ 22 (66)
T PF00313_consen 3 GTVKWFDDEKGYGFITSDDG 22 (66)
T ss_dssp EEEEEEETTTTEEEEEETTS
T ss_pred EEEEEEECCCCceEEEEccc
Confidence 56666666789999987653
No 271
>PRK14998 cold shock-like protein CspD; Provisional
Probab=24.73 E-value=61 Score=20.98 Aligned_cols=49 Identities=14% Similarity=0.195 Sum_probs=27.2
Q ss_pred CCCeEEEEEeCCeEEEEecCH-HHHH---HHHHhcCC--CcccCcEEEEEEeecCC
Q 026341 90 YGNVLHVRIRRNFAFVQFETQ-EEAT---KALESTDR--SKLVDRVISVEYALKDD 139 (240)
Q Consensus 90 ~G~i~~~~~~kg~afV~f~~~-~~a~---~A~~~l~g--~~~~g~~l~v~~a~~~~ 139 (240)
.|.|+.....+||+||+=.+- +++- .+|.. ++ ....|..|..++.....
T Consensus 3 ~G~Vkwfn~~kGfGFI~~~~g~~dVFvH~s~l~~-~g~~~l~~G~~V~f~~~~~~~ 57 (73)
T PRK14998 3 TGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQM-DGYRTLKAGQSVRFDVHQGPK 57 (73)
T ss_pred CeEEEEEeCCCceEEEecCCCCccEEEEeeeecc-cCCCCCCCCCEEEEEEEECCC
Confidence 377777777899999965432 2211 11221 22 23456777776665543
No 272
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=24.53 E-value=57 Score=20.80 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=15.1
Q ss_pred CCCeEEEEEeCCeEEEEecC
Q 026341 90 YGNVLHVRIRRNFAFVQFET 109 (240)
Q Consensus 90 ~G~i~~~~~~kg~afV~f~~ 109 (240)
.|.|+...-.+||+||+=.+
T Consensus 5 ~G~Vk~f~~~kGyGFI~~~~ 24 (69)
T PRK09507 5 KGNVKWFNESKGFGFITPED 24 (69)
T ss_pred ceEEEEEeCCCCcEEEecCC
Confidence 36777777789999997544
No 273
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=24.47 E-value=61 Score=21.04 Aligned_cols=48 Identities=15% Similarity=0.215 Sum_probs=26.2
Q ss_pred CCeEEEEEeCCeEEEEecCH-HHHH---HHHHhcCC--CcccCcEEEEEEeecCC
Q 026341 91 GNVLHVRIRRNFAFVQFETQ-EEAT---KALESTDR--SKLVDRVISVEYALKDD 139 (240)
Q Consensus 91 G~i~~~~~~kg~afV~f~~~-~~a~---~A~~~l~g--~~~~g~~l~v~~a~~~~ 139 (240)
|.|+...-.|||+||+=.+- +++- .+|.. .+ ....|..|..++.....
T Consensus 4 G~Vkwfn~~KGfGFI~~~~gg~dVFvH~s~i~~-~g~~~l~~G~~V~f~~~~~~~ 57 (74)
T PRK09937 4 GTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQM-DGYRTLKAGQSVQFDVHQGPK 57 (74)
T ss_pred eEEEEEeCCCCeEEEeeCCCCccEEEEEeeccc-cCCCCCCCCCEEEEEEEECCC
Confidence 67777777899999965431 1111 11211 22 23456777777665543
No 274
>PRK10943 cold shock-like protein CspC; Provisional
Probab=24.15 E-value=58 Score=20.75 Aligned_cols=49 Identities=10% Similarity=0.129 Sum_probs=27.4
Q ss_pred CCCeEEEEEeCCeEEEEecCH-HHHHHHHHhcC--C--CcccCcEEEEEEeecC
Q 026341 90 YGNVLHVRIRRNFAFVQFETQ-EEATKALESTD--R--SKLVDRVISVEYALKD 138 (240)
Q Consensus 90 ~G~i~~~~~~kg~afV~f~~~-~~a~~A~~~l~--g--~~~~g~~l~v~~a~~~ 138 (240)
.|.|+...-.+||+||+=.+- ++.--=+..+. + ....|..|..++....
T Consensus 5 ~G~Vk~f~~~kGfGFI~~~~g~~dvFvH~s~l~~~g~~~l~~G~~V~f~~~~~~ 58 (69)
T PRK10943 5 KGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQ 58 (69)
T ss_pred ceEEEEEeCCCCcEEEecCCCCeeEEEEhhHccccCCCCCCCCCEEEEEEEECC
Confidence 477777777899999975442 22211111221 2 2345777777666544
No 275
>PF14893 PNMA: PNMA
Probab=24.07 E-value=92 Score=26.75 Aligned_cols=46 Identities=22% Similarity=0.450 Sum_probs=30.6
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhcc-CCCeEEEEE---------eCCeEEEEecC
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEP-YGNVLHVRI---------RRNFAFVQFET 109 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~-~G~i~~~~~---------~kg~afV~f~~ 109 (240)
.+-+.|.|.+| |.+|++++|++.+.. +-++-.+.| ....|+|+|..
T Consensus 16 ~~~r~lLv~gi-P~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e 71 (331)
T PF14893_consen 16 DPQRALLVLGI-PEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAE 71 (331)
T ss_pred ChhhhheeecC-CCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccc
Confidence 34577899999 999999999887753 222222232 12467888764
No 276
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=24.00 E-value=1.7e+02 Score=19.70 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=10.4
Q ss_pred CCccceEEEEeCCh
Q 026341 5 LHYAGFAFVYFEDD 18 (240)
Q Consensus 5 ~~~kG~aFV~F~~~ 18 (240)
-++-.||.|+|.-.
T Consensus 5 YnSd~y~VV~~~~~ 18 (85)
T PF12091_consen 5 YNSDNYCVVEFPPD 18 (85)
T ss_pred ecCCceEEEEecCC
Confidence 45678999999543
No 277
>PRK11425 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=23.84 E-value=2.2e+02 Score=21.45 Aligned_cols=16 Identities=6% Similarity=0.144 Sum_probs=9.4
Q ss_pred EEEEeCChhHHHHHHH
Q 026341 11 AFVYFEDDRDAADAIR 26 (240)
Q Consensus 11 aFV~F~~~~~A~~A~~ 26 (240)
.||-|.++++|.++++
T Consensus 79 v~il~k~~~d~~~l~~ 94 (157)
T PRK11425 79 ILLVCKTPADFLTLVK 94 (157)
T ss_pred EEEEECCHHHHHHHHH
Confidence 5566666666655554
No 278
>PRK15463 cold shock-like protein CspF; Provisional
Probab=23.76 E-value=58 Score=20.87 Aligned_cols=49 Identities=8% Similarity=-0.063 Sum_probs=28.1
Q ss_pred CCCeEEEEEeCCeEEEEecCH-HHHH---HHHHhc-CCCcccCcEEEEEEeecC
Q 026341 90 YGNVLHVRIRRNFAFVQFETQ-EEAT---KALEST-DRSKLVDRVISVEYALKD 138 (240)
Q Consensus 90 ~G~i~~~~~~kg~afV~f~~~-~~a~---~A~~~l-~g~~~~g~~l~v~~a~~~ 138 (240)
.|.|+...-.+||+||+=.+- +++- .||... ....-.|..|..++....
T Consensus 6 ~G~Vk~fn~~kGfGFI~~~~g~~DvFvH~sal~~~g~~~l~~G~~V~f~v~~~~ 59 (70)
T PRK15463 6 TGIVKTFDGKSGKGLITPSDGRKDVQVHISALNLRDAEELTTGLRVEFCRINGL 59 (70)
T ss_pred eEEEEEEeCCCceEEEecCCCCccEEEEehhhhhcCCCCCCCCCEEEEEEEECC
Confidence 477777777899999976542 2221 233221 122345777777766544
No 279
>TIGR00854 pts-sorbose PTS system, mannose/fructose/sorbose family, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIB components of this family of PTS transporters.
Probab=23.25 E-value=2.5e+02 Score=21.00 Aligned_cols=16 Identities=19% Similarity=0.507 Sum_probs=8.5
Q ss_pred EEEEeCChhHHHHHHH
Q 026341 11 AFVYFEDDRDAADAIR 26 (240)
Q Consensus 11 aFV~F~~~~~A~~A~~ 26 (240)
.||-|.++++|.++++
T Consensus 78 v~vl~k~~~da~~l~~ 93 (151)
T TIGR00854 78 IFLLFRNPQDVLTLVE 93 (151)
T ss_pred EEEEECCHHHHHHHHH
Confidence 4555555555555544
No 280
>PHA03048 IMV membrane protein; Provisional
Probab=22.83 E-value=8.7 Score=25.84 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=13.8
Q ss_pred eEEEEeCChhHHHHHHHhhCC
Q 026341 10 FAFVYFEDDRDAADAIRGLDN 30 (240)
Q Consensus 10 ~aFV~F~~~~~A~~A~~~l~g 30 (240)
||||+|........+...|.+
T Consensus 28 fAfidfsK~k~~~~~wRalsi 48 (93)
T PHA03048 28 FAFVDFSKNKATVTVWRALSG 48 (93)
T ss_pred HhhhhhhcCCCcchhHHHHHH
Confidence 799999877655555444444
No 281
>PF07711 RabGGT_insert: Rab geranylgeranyl transferase alpha-subunit, insert domain ; InterPro: IPR009087 Rab geranylgeranyltransferase (RabGGT) catalyses the transfer of geranylgeranyl groups to the C-terminal cysteine residues of Rab proteins, Ras-related small GTPases that function in intracellular vesicular transport []. RabGGT is only able to prenylate Rab when it is complexed to the Rab escort protein (REP), after which REP remains bound to the prenylated Rab and delivers it to its target membrane. RabGGT is a member of the protein prenyltransferase family (IPR008940 from INTERPRO), all of which are heterodimers consisting of alpha and beta subunits. RabGGT is distinct from other members of the prenyltransferase family because of the presence of an Ig-like insert domain in the alpha subunit that is folded into an eight-stranded sandwich between two helices in the helical domain.; GO: 0004663 Rab geranylgeranyltransferase activity, 0008270 zinc ion binding; PDB: 1DCE_C 1LTX_A.
Probab=22.82 E-value=40 Score=23.31 Aligned_cols=47 Identities=17% Similarity=0.328 Sum_probs=25.2
Q ss_pred eEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEecc
Q 026341 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINF 73 (240)
Q Consensus 10 ~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl 73 (240)
.--|.|.-+-.| .+.+.+|+.+|++|.|+|-.+..... ...++|..|
T Consensus 14 ~l~V~FSrPv~v-----~~~~LlL~~D~~Pl~VeWRtp~gr~r------------~s~vWlcdL 60 (102)
T PF07711_consen 14 CLTVAFSRPVNV-----GSETLLLFVDGSPLTVEWRTPDGRNR------------PSHVWLCDL 60 (102)
T ss_dssp EEEEEEEEEE-S-----TTB-EEEEESSSEE----B-TTSS--------------SEEEEEEE-
T ss_pred eEEEEecceeee-----eeeeEEEEEcCCceEEEeeCCCCCCC------------cCeEEEEeC
Confidence 345667766655 35555566689999999998765432 347889998
No 282
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=22.38 E-value=1.1e+02 Score=21.21 Aligned_cols=20 Identities=10% Similarity=0.210 Sum_probs=16.9
Q ss_pred ceEEEEeCChhHHHHHHHhh
Q 026341 9 GFAFVYFEDDRDAADAIRGL 28 (240)
Q Consensus 9 G~aFV~F~~~~~A~~A~~~l 28 (240)
=|..|+|.+.+++.+|+.++
T Consensus 67 vFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 67 VFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEcCchhHHHHHHHHh
Confidence 48999999999988888753
No 283
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=22.24 E-value=67 Score=19.81 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=26.4
Q ss_pred CCCeEEEEEeCCeEEEEecC-HHHHHHHHHhcC----CCcccCcEEEEEEeec
Q 026341 90 YGNVLHVRIRRNFAFVQFET-QEEATKALESTD----RSKLVDRVISVEYALK 137 (240)
Q Consensus 90 ~G~i~~~~~~kg~afV~f~~-~~~a~~A~~~l~----g~~~~g~~l~v~~a~~ 137 (240)
.|.|+.....+||+||+=.+ .++.---+..+. .....|..|..++...
T Consensus 2 ~G~Vk~~~~~kGfGFI~~~~~g~diffh~~~~~~~~~~~~~~G~~V~f~~~~~ 54 (65)
T cd04458 2 TGTVKWFDDEKGFGFITPDDGGEDVFVHISALEGDGFRSLEEGDRVEFELEEG 54 (65)
T ss_pred cEEEEEEECCCCeEEEecCCCCcCEEEEhhHhhccCCCcCCCCCEEEEEEEEC
Confidence 35666666678999997665 222211111121 2234567777766655
No 284
>PRK09890 cold shock protein CspG; Provisional
Probab=21.81 E-value=66 Score=20.56 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=15.3
Q ss_pred CCCeEEEEEeCCeEEEEecC
Q 026341 90 YGNVLHVRIRRNFAFVQFET 109 (240)
Q Consensus 90 ~G~i~~~~~~kg~afV~f~~ 109 (240)
.|.|+...-.+||+||+=.+
T Consensus 6 ~G~Vk~f~~~kGfGFI~~~~ 25 (70)
T PRK09890 6 TGLVKWFNADKGFGFITPDD 25 (70)
T ss_pred eEEEEEEECCCCcEEEecCC
Confidence 47777777789999997654
No 285
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=21.62 E-value=44 Score=31.14 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=29.6
Q ss_pred eEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEec
Q 026341 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 45 (240)
Q Consensus 10 ~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a 45 (240)
|||.+|....-+..|+..|+...+ +|+.+.+..-
T Consensus 75 fgf~~f~~~~~~~ra~r~~t~~~~--~~~kl~~~~d 108 (668)
T KOG2253|consen 75 FGFCEFLKHIGDLRASRLLTELNI--DDQKLIENVD 108 (668)
T ss_pred hcccchhhHHHHHHHHHHhcccCC--Ccchhhccch
Confidence 999999999999999998888888 6888877653
No 286
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=21.40 E-value=71 Score=29.09 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=32.0
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccC
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 47 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~ 47 (240)
+..|+++.|+++..+.+|+..++|... .+..+.|..+..
T Consensus 62 ~~~~~~~~~et~~~~~ka~~~v~g~~~--k~~~~~~~~~~~ 100 (534)
T KOG2187|consen 62 MPKYAYVTFETPSDAGKAINLVDGLLY--KGFILRVQLGAT 100 (534)
T ss_pred CCCceEEEEeccchhhhHHHHHhhhhh--hcchhhhhhccc
Confidence 468999999999999999999999877 466666665553
No 287
>COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]
Probab=21.35 E-value=3.7e+02 Score=20.41 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=15.6
Q ss_pred cceEEEEeCChhHHHHHHHh
Q 026341 8 AGFAFVYFEDDRDAADAIRG 27 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~ 27 (240)
....||.|.++++|..+++.
T Consensus 76 ~~~v~ll~~~p~d~~~lve~ 95 (159)
T COG3444 76 GQKVFLLFENPQDVLRLVEG 95 (159)
T ss_pred CeEEEEEECCHHHHHHHHhc
Confidence 55778888888888888874
No 288
>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=21.23 E-value=4e+02 Score=20.66 Aligned_cols=97 Identities=14% Similarity=0.088 Sum_probs=52.5
Q ss_pred HHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE-
Q 026341 20 DAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI- 98 (240)
Q Consensus 20 ~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~- 98 (240)
-++.|...|+|+. .-.|.|+......+.-...-.....-...|-|.-- |..++-++|.++|=.......+.-
T Consensus 36 g~E~a~~~l~gV~------~T~vGYagG~~~nPtYk~vc~~tT~HaEvvrV~yd-pk~~sy~~Lld~Fw~~HdPtt~n~Q 108 (191)
T KOG1635|consen 36 GVELAYQRLPGVV------RTEVGYAGGITDNPTYKDVCSGTTNHAEVVRVQYD-PKVISYEELLDFFWSRHDPTTLNRQ 108 (191)
T ss_pred hHHHHHhhcCCeE------EEeecccCCccCCcchhhhccCCCCcceEEEEEeC-cccccHHHHHHHHHHcCCchhhhcc
Confidence 4556666688843 45777887654333211111111112334556554 788999999999855443332221
Q ss_pred ----eCCe-EEEEecCHHHHHHHHHhcCCC
Q 026341 99 ----RRNF-AFVQFETQEEATKALESTDRS 123 (240)
Q Consensus 99 ----~kg~-afV~f~~~~~a~~A~~~l~g~ 123 (240)
-..| .-|-|.+.++.+.|.+.|...
T Consensus 109 G~D~GtQYRS~I~~~s~eq~k~A~~s~e~~ 138 (191)
T KOG1635|consen 109 GNDVGTQYRSGIYTYSPEQEKLARESKERE 138 (191)
T ss_pred CCcccceeeeeeeeCCHHHHHHHHHHHHHH
Confidence 1112 225567777777777666443
No 289
>PRK14887 KEOPS complex Pcc1-like subunit; Provisional
Probab=20.89 E-value=2.7e+02 Score=18.56 Aligned_cols=41 Identities=12% Similarity=-0.110 Sum_probs=27.8
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEecc
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 46 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~ 46 (240)
.+++.+=|+|.+++.|+.+.+.+.--.....+...++++..
T Consensus 3 ~~~~~lei~f~s~~~A~iiy~sl~~E~~~~~~~rs~~~~~~ 43 (84)
T PRK14887 3 MHKFTLEFEFETEERARIIYRSVLPEHGDSQGERSKADLSL 43 (84)
T ss_pred CceEEEEEEECCHHHHHHHHHHhCcCcccCCcCceEEEEEE
Confidence 35778889999999999988876554332233455666544
No 290
>PF07420 DUF1509: Protein of unknown function (DUF1509); InterPro: IPR010883 This family consists of several uncharacterised viral proteins, which include LORF2 from the Marek's disease-like viruses (Meleagrid herpesvirus 1 (MeHV-1) and LORF3 from Gallid herpesvirus 2. Members of this family are typically around 400 residues in length. The function of this family is unknown.
Probab=20.73 E-value=79 Score=26.45 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcccCC
Q 026341 208 PVYDRRRSPDYGRNRSPNFGRYRSRSPVRRSR 239 (240)
Q Consensus 208 ~~~~~~r~~~~~rs~s~~~~r~rsrs~~~~~r 239 (240)
+++..++.++++||+|++++.++..-+.+.++
T Consensus 324 erR~~r~nRsrsRSrSrsrS~drr~RRr~~R~ 355 (377)
T PF07420_consen 324 ERRRGRRNRSRSRSRSRSRSGDRRERRRRKRR 355 (377)
T ss_pred CccccCcccccccccCcccccchhcccccccc
No 291
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=20.46 E-value=73 Score=20.32 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=14.6
Q ss_pred CCCeEEEEEeCCeEEEEecC
Q 026341 90 YGNVLHVRIRRNFAFVQFET 109 (240)
Q Consensus 90 ~G~i~~~~~~kg~afV~f~~ 109 (240)
.|.|+...-.+||+||+=.+
T Consensus 6 ~G~Vk~f~~~kGfGFI~~~~ 25 (70)
T PRK10354 6 TGIVKWFNADKGFGFITPDD 25 (70)
T ss_pred eEEEEEEeCCCCcEEEecCC
Confidence 46777777779999997543
No 292
>PHA02898 virion envelope protein; Provisional
Probab=20.44 E-value=15 Score=24.69 Aligned_cols=21 Identities=14% Similarity=0.358 Sum_probs=12.8
Q ss_pred eEEEEeCChhHH-HHHHHhhCC
Q 026341 10 FAFVYFEDDRDA-ADAIRGLDN 30 (240)
Q Consensus 10 ~aFV~F~~~~~A-~~A~~~l~g 30 (240)
||||+|...... +.+...|.+
T Consensus 28 fAfidfSK~~~~~~~~wRalSi 49 (92)
T PHA02898 28 CAYIELSKSEKPADSALRSISI 49 (92)
T ss_pred HheehhhcCCCcchhHHHHHHH
Confidence 799999776632 444444433
No 293
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=20.42 E-value=68 Score=20.39 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=13.5
Q ss_pred eEEEEeCChhHHHHHHHhh
Q 026341 10 FAFVYFEDDRDAADAIRGL 28 (240)
Q Consensus 10 ~aFV~F~~~~~A~~A~~~l 28 (240)
.+|..|.+.++|-.++..+
T Consensus 46 ~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 46 KAFSPFKSAEEALENANAI 64 (67)
T ss_pred hhccCCCCHHHHHHHHHHh
Confidence 4688888888777766544
No 294
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.07 E-value=64 Score=25.73 Aligned_cols=30 Identities=30% Similarity=0.694 Sum_probs=19.8
Q ss_pred HHHHHhhc-cCCCeEEEEEeCCeEEEEecCH
Q 026341 81 RDIKRHFE-PYGNVLHVRIRRNFAFVQFETQ 110 (240)
Q Consensus 81 ~~l~~~f~-~~G~i~~~~~~kg~afV~f~~~ 110 (240)
++|.+.|. .||.-..-.+.+.|+||+|.+.
T Consensus 89 edL~~EF~~~~~~~~~~~~~RPY~FieFD~~ 119 (216)
T KOG0862|consen 89 EDLAQEFDKSYGKNIIQPASRPYAFIEFDTF 119 (216)
T ss_pred HHHHHHHHHhcccccCCccCCCeeEEehhHH
Confidence 55555554 5665444445789999999864
No 295
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=20.06 E-value=87 Score=21.30 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=18.4
Q ss_pred cceEEEEeCChhHHHHHHHhhCCC
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNI 31 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~ 31 (240)
.||-||++.-.+++-.++..+.|.
T Consensus 59 pGYvFv~~~~~~~~~~~i~~~~~v 82 (106)
T smart00738 59 PGYIFVEADLEDEVWTAIRGTPGV 82 (106)
T ss_pred CCEEEEEEEeCCcHHHHHhcCCCc
Confidence 499999998766667777766664
No 296
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=20.01 E-value=1.6e+02 Score=28.29 Aligned_cols=39 Identities=23% Similarity=0.167 Sum_probs=29.1
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCC
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 48 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~ 48 (240)
+..+.|||+|.+...|..|....+.... ....+++|-..
T Consensus 303 ~~~~~aFVtf~sr~~A~~~aq~~~~~~~----~~w~~~~APeP 341 (728)
T KOG1134|consen 303 KPLPAAFVTFKSRYGAAVAAQTQQSLNP----TKWLTEFAPEP 341 (728)
T ss_pred CCCceEEEEEEeeHHHHHHHHhhhcCCC----CceEEEecCCc
Confidence 4468999999999999998886555544 25677777643
Done!