Query 026341
Match_columns 240
No_of_seqs 375 out of 2468
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 11:19:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026341.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026341hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3md3_A Nuclear and cytoplasmic 99.9 1.1E-26 3.9E-31 176.8 15.3 122 3-136 36-165 (166)
2 4f02_A Polyadenylate-binding p 99.9 8E-27 2.7E-31 185.6 12.0 124 3-138 52-181 (213)
3 1fje_B Nucleolin RBD12, protei 99.9 1.3E-26 4.4E-31 178.5 12.7 123 3-138 49-174 (175)
4 1b7f_A Protein (SXL-lethal pro 99.9 3.9E-26 1.3E-30 174.4 14.9 118 4-135 41-168 (168)
5 2yh0_A Splicing factor U2AF 65 99.9 3.7E-26 1.3E-30 179.1 14.1 132 4-139 47-195 (198)
6 3pgw_A U1-A; protein-RNA compl 99.9 8E-26 2.7E-30 187.0 16.6 131 3-136 47-281 (282)
7 2qfj_A FBP-interacting repress 99.9 8.2E-27 2.8E-31 185.3 9.9 133 4-139 66-206 (216)
8 1fxl_A Paraneoplastic encephal 99.9 8.8E-26 3E-30 172.0 13.8 118 4-135 40-167 (167)
9 2g4b_A Splicing factor U2AF 65 99.9 5.5E-26 1.9E-30 174.3 12.3 117 4-135 47-171 (172)
10 1l3k_A Heterogeneous nuclear r 99.9 1.1E-25 3.9E-30 176.1 14.0 128 4-141 51-186 (196)
11 2adc_A Polypyrimidine tract-bi 99.9 3.4E-25 1.2E-29 178.1 15.7 128 8-138 72-228 (229)
12 2i2y_A Fusion protein consists 99.9 1.1E-25 3.7E-30 169.5 10.4 133 3-139 8-149 (150)
13 1qm9_A Polypyrimidine tract-bi 99.9 3.5E-25 1.2E-29 173.9 13.7 128 8-138 41-197 (198)
14 3tyt_A Heterogeneous nuclear r 99.9 4.2E-25 1.4E-29 174.6 13.2 126 7-135 41-204 (205)
15 2kn4_A Immunoglobulin G-bindin 99.9 3.5E-25 1.2E-29 168.0 11.3 135 3-140 8-152 (158)
16 3smz_A Protein raver-1, ribonu 99.9 1.6E-24 5.4E-29 179.4 14.3 126 4-140 133-266 (284)
17 3nmr_A Cugbp ELAV-like family 99.9 1.8E-24 6.1E-29 166.1 13.5 120 6-136 45-175 (175)
18 2ghp_A U4/U6 snRNA-associated 99.9 3.2E-24 1.1E-28 178.2 13.9 126 5-138 156-291 (292)
19 2cjk_A Nuclear polyadenylated 99.9 4.8E-25 1.6E-29 168.2 7.9 119 3-138 40-166 (167)
20 3pgw_S U1-70K; protein-RNA com 99.9 3.6E-23 1.2E-27 180.6 14.5 79 61-140 98-184 (437)
21 3smz_A Protein raver-1, ribonu 99.9 7.2E-23 2.5E-27 169.4 14.1 115 5-139 54-176 (284)
22 3sde_A Paraspeckle component 1 99.9 6.7E-23 2.3E-27 167.8 12.1 115 5-139 55-180 (261)
23 2ghp_A U4/U6 snRNA-associated 99.9 3.6E-22 1.2E-26 165.8 13.1 111 7-139 80-198 (292)
24 1rk8_A CG8781-PA, CG8781-PA pr 99.8 3.8E-21 1.3E-25 146.8 9.8 127 13-140 11-154 (165)
25 2dgu_A Heterogeneous nuclear r 99.8 6.1E-20 2.1E-24 129.2 12.8 82 61-143 7-88 (103)
26 2lea_A Serine/arginine-rich sp 99.8 4.2E-21 1.4E-25 141.7 6.7 117 9-140 5-129 (135)
27 1x4c_A Splicing factor, argini 99.8 3.2E-19 1.1E-23 126.6 12.8 76 62-138 12-93 (108)
28 4fxv_A ELAV-like protein 1; RN 99.8 9.4E-20 3.2E-24 127.3 9.3 74 63-137 17-98 (99)
29 2dnq_A RNA-binding protein 4B; 99.8 2.8E-19 9.7E-24 122.6 11.2 78 62-140 5-82 (90)
30 1wf1_A RNA-binding protein RAL 99.8 1.4E-19 4.9E-24 128.8 9.8 95 36-139 6-101 (110)
31 2dgt_A RNA-binding protein 30; 99.8 3.9E-19 1.3E-23 122.4 11.2 79 61-140 6-84 (92)
32 2dnp_A RNA-binding protein 14; 99.8 3.1E-19 1.1E-23 122.4 10.4 78 62-140 6-83 (90)
33 2kvi_A Nuclear polyadenylated 99.8 2.1E-19 7.1E-24 124.8 9.4 79 61-140 6-85 (96)
34 3r27_A HnRNP L, heterogeneous 99.8 3.2E-19 1.1E-23 123.7 10.2 78 61-139 17-98 (100)
35 3ex7_B RNA-binding protein 8A; 99.8 2.8E-19 9.6E-24 130.3 10.4 80 61-141 18-105 (126)
36 2cpd_A Apobec-1 stimulating pr 99.8 1E-18 3.6E-23 121.9 12.3 78 61-139 11-90 (99)
37 3beg_B Splicing factor, argini 99.8 3.4E-19 1.2E-23 127.9 9.1 73 64-137 15-93 (115)
38 2fy1_A RNA-binding motif prote 99.8 1.5E-18 5.1E-23 124.7 12.4 78 62-140 4-88 (116)
39 2xnq_A Nuclear polyadenylated 99.8 1.1E-18 3.6E-23 121.5 10.5 77 61-138 18-95 (97)
40 1x4d_A Matrin 3; structural ge 99.8 9.4E-19 3.2E-23 122.4 10.1 78 61-139 11-93 (102)
41 1wex_A Hypothetical protein (r 99.8 2.3E-18 7.9E-23 121.1 12.0 81 61-142 11-95 (104)
42 1x4a_A Splicing factor, argini 99.8 2.5E-18 8.6E-23 122.1 12.3 79 61-140 18-101 (109)
43 1sjq_A Polypyrimidine tract-bi 99.8 4.3E-19 1.5E-23 124.3 8.1 80 61-141 12-95 (105)
44 2cq3_A RNA-binding protein 9; 99.8 4.7E-18 1.6E-22 119.4 13.2 80 61-141 11-96 (103)
45 2dnz_A Probable RNA-binding pr 99.8 3.4E-18 1.1E-22 118.3 12.0 77 63-140 3-87 (95)
46 2d9p_A Polyadenylate-binding p 99.8 2.9E-18 9.8E-23 120.5 11.7 79 61-140 11-95 (103)
47 2cqi_A Nucleolysin TIAR; RNA r 99.8 3.4E-18 1.2E-22 120.1 12.1 80 61-141 11-96 (103)
48 2wbr_A GW182, gawky, LD47780P; 99.8 7.9E-19 2.7E-23 117.8 8.1 73 63-136 5-79 (89)
49 3s8s_A Histone-lysine N-methyl 99.8 1.4E-18 4.7E-23 123.6 9.9 76 62-138 3-86 (110)
50 2jvr_A Nucleolar protein 3; RN 99.8 5.8E-19 2E-23 125.5 7.9 74 64-138 27-105 (111)
51 2dgx_A KIAA0430 protein; RRM d 99.8 1.9E-18 6.6E-23 119.9 10.2 77 62-139 6-91 (96)
52 2cq1_A PTB-like protein L; RRM 99.8 6.5E-18 2.2E-22 118.1 12.7 80 61-141 11-94 (101)
53 2ad9_A Polypyrimidine tract-bi 99.8 2.7E-18 9.3E-23 123.1 10.7 81 61-142 27-111 (119)
54 2jvo_A Nucleolar protein 3; nu 99.8 1.3E-18 4.6E-23 123.3 9.0 78 61-139 27-104 (108)
55 1x5u_A Splicing factor 3B subu 99.8 5E-18 1.7E-22 119.6 11.9 79 61-140 11-97 (105)
56 2dgo_A Cytotoxic granule-assoc 99.8 8.8E-18 3E-22 120.4 13.3 82 61-143 11-100 (115)
57 1x5s_A Cold-inducible RNA-bind 99.8 4.5E-18 1.5E-22 119.2 11.5 79 61-140 8-94 (102)
58 1whw_A Hypothetical protein ri 99.8 5.7E-18 1.9E-22 118.1 12.0 78 62-140 5-90 (99)
59 4a8x_A RNA-binding protein wit 99.8 3.9E-18 1.3E-22 116.2 10.8 75 64-139 3-86 (88)
60 1x4f_A Matrin 3; structural ge 99.8 1.7E-18 5.8E-23 122.9 9.2 79 61-140 21-104 (112)
61 2dnm_A SRP46 splicing factor; 99.8 3.1E-18 1.1E-22 120.3 10.5 79 61-140 9-95 (103)
62 2dgs_A DAZ-associated protein 99.8 7.5E-18 2.6E-22 117.5 12.4 79 61-141 6-92 (99)
63 2cq0_A Eukaryotic translation 99.8 4.5E-18 1.5E-22 119.5 11.2 79 61-140 11-97 (103)
64 1u6f_A Tcubp1, RNA-binding pro 99.8 8.4E-18 2.9E-22 124.5 13.2 80 61-141 38-125 (139)
65 4f25_A Polyadenylate-binding p 99.8 2E-18 6.8E-23 123.9 9.4 74 65-139 5-84 (115)
66 1x5t_A Splicing factor 3B subu 99.8 2.5E-18 8.5E-23 119.2 9.6 77 63-140 3-88 (96)
67 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.3E-18 1.1E-22 119.9 10.2 80 61-141 8-95 (102)
68 3mdf_A Peptidyl-prolyl CIS-tra 99.8 4E-18 1.4E-22 115.4 10.3 74 62-136 4-85 (85)
69 1h2v_Z 20 kDa nuclear CAP bind 99.8 3.5E-18 1.2E-22 129.1 11.0 79 61-140 35-121 (156)
70 2dnh_A Bruno-like 5, RNA bindi 99.8 7.3E-18 2.5E-22 118.8 11.5 80 61-141 11-100 (105)
71 2do4_A Squamous cell carcinoma 99.8 6E-18 2.1E-22 118.2 10.6 79 61-140 13-98 (100)
72 1why_A Hypothetical protein ri 99.8 6.8E-18 2.3E-22 117.3 10.5 78 61-139 13-94 (97)
73 2cqh_A IGF-II mRNA-binding pro 99.8 3.6E-18 1.2E-22 117.7 8.8 78 62-140 5-85 (93)
74 3md1_A Nuclear and cytoplasmic 99.8 5.4E-18 1.9E-22 114.2 9.4 74 65-139 1-82 (83)
75 2cpj_A Non-POU domain-containi 99.8 1.2E-17 4E-22 116.5 11.4 79 61-140 11-91 (99)
76 2e5h_A Zinc finger CCHC-type a 99.8 8.5E-18 2.9E-22 116.0 10.6 75 61-136 12-94 (94)
77 2cpf_A RNA binding motif prote 99.8 6.9E-18 2.4E-22 117.4 10.2 77 63-140 3-90 (98)
78 3bs9_A Nucleolysin TIA-1 isofo 99.7 4.6E-18 1.6E-22 115.6 9.0 75 63-138 4-86 (87)
79 2x1f_A MRNA 3'-END-processing 99.7 6.6E-18 2.2E-22 117.1 9.8 75 64-139 1-83 (96)
80 1wi8_A EIF-4B, eukaryotic tran 99.7 1.4E-17 4.9E-22 117.1 11.6 77 61-140 11-96 (104)
81 2dgv_A HnRNP M, heterogeneous 99.7 5.8E-18 2E-22 116.4 9.3 78 62-140 5-88 (92)
82 2lxi_A RNA-binding protein 10; 99.7 1.2E-18 4.2E-23 119.7 5.8 75 65-140 1-85 (91)
83 1p27_B RNA-binding protein 8A; 99.7 7.2E-18 2.5E-22 119.0 9.9 78 61-139 19-104 (106)
84 2cpz_A CUG triplet repeat RNA- 99.7 6.1E-18 2.1E-22 121.2 9.7 79 61-140 21-107 (115)
85 1x4h_A RNA-binding protein 28; 99.7 1.6E-17 5.5E-22 118.2 11.6 79 61-140 11-103 (111)
86 2cqd_A RNA-binding region cont 99.7 3.2E-17 1.1E-21 117.6 13.1 78 61-140 13-98 (116)
87 2ytc_A PRE-mRNA-splicing facto 99.7 9.3E-18 3.2E-22 113.6 9.7 75 61-136 8-85 (85)
88 1oo0_B CG8781-PA, drosophila Y 99.7 9.9E-18 3.4E-22 119.1 10.3 79 61-140 22-108 (110)
89 1x4g_A Nucleolysin TIAR; struc 99.7 1.1E-17 3.7E-22 118.8 10.5 79 61-140 21-101 (109)
90 2dhg_A TRNA selenocysteine ass 99.7 7.2E-18 2.5E-22 118.6 9.4 80 61-141 5-93 (104)
91 2cph_A RNA binding motif prote 99.7 2.4E-17 8.3E-22 116.4 12.0 79 61-140 11-99 (107)
92 3ulh_A THO complex subunit 4; 99.7 9E-18 3.1E-22 118.7 9.7 75 61-136 25-106 (107)
93 2do0_A HnRNP M, heterogeneous 99.7 4.5E-17 1.5E-21 116.4 13.3 78 61-139 11-95 (114)
94 2dgp_A Bruno-like 4, RNA bindi 99.7 1.5E-17 5.2E-22 117.3 10.6 79 61-140 9-98 (106)
95 2err_A Ataxin-2-binding protei 99.7 8.2E-18 2.8E-22 119.4 9.0 77 61-138 25-107 (109)
96 1nu4_A U1A RNA binding domain; 99.7 1.4E-17 4.7E-22 115.6 9.8 78 61-139 4-90 (97)
97 2cqc_A Arginine/serine-rich sp 99.7 8.9E-18 3E-22 116.1 8.7 76 61-137 11-94 (95)
98 2a3j_A U1 small nuclear ribonu 99.7 1.3E-17 4.5E-22 121.4 9.9 78 61-139 25-111 (127)
99 2e5j_A Methenyltetrahydrofolat 99.7 1.3E-17 4.4E-22 115.9 9.3 77 61-139 15-95 (97)
100 2lkz_A RNA-binding protein 5; 99.7 6.9E-18 2.3E-22 116.7 7.6 74 63-137 7-94 (95)
101 2la6_A RNA-binding protein FUS 99.7 1.6E-17 5.5E-22 115.8 9.6 76 60-136 8-99 (99)
102 2fc9_A NCL protein; structure 99.7 2E-17 6.9E-22 115.7 10.1 78 61-139 11-92 (101)
103 2dng_A Eukaryotic translation 99.7 3.5E-17 1.2E-21 114.9 11.3 77 61-140 11-95 (103)
104 2cpe_A RNA-binding protein EWS 99.7 1.9E-17 6.5E-22 118.2 10.1 79 61-140 11-105 (113)
105 2hvz_A Splicing factor, argini 99.7 8.4E-18 2.9E-22 117.7 8.0 73 66-139 1-76 (101)
106 2cpx_A Hypothetical protein FL 99.7 3E-17 1E-21 117.5 11.1 80 61-141 21-108 (115)
107 2jrs_A RNA-binding protein 39; 99.7 2.2E-17 7.4E-22 117.1 9.9 78 61-139 22-107 (108)
108 1whx_A Hypothetical protein ri 99.7 1.5E-17 5.1E-22 118.5 9.1 75 64-139 9-85 (111)
109 2kxn_B Transformer-2 protein h 99.7 1.1E-17 3.6E-22 122.4 8.5 79 60-139 41-127 (129)
110 2hgn_A Heterogeneous nuclear r 99.7 2E-18 6.7E-23 127.6 4.6 118 8-140 1-125 (139)
111 2cpi_A CCR4-NOT transcription 99.7 1.8E-17 6.2E-22 118.0 9.4 78 61-139 11-102 (111)
112 2ywk_A Putative RNA-binding pr 99.7 1.3E-17 4.5E-22 115.3 8.0 76 61-137 12-94 (95)
113 2e5i_A Heterogeneous nuclear r 99.7 6.9E-17 2.3E-21 116.7 12.0 73 66-139 26-103 (124)
114 2cq2_A Hypothetical protein LO 99.7 2.2E-17 7.7E-22 117.2 9.2 79 61-140 21-108 (114)
115 2khc_A Testis-specific RNP-typ 99.7 2.6E-17 9E-22 118.4 9.6 75 61-136 36-118 (118)
116 3ns6_A Eukaryotic translation 99.7 9.7E-18 3.3E-22 117.2 7.0 74 64-138 5-93 (100)
117 2la4_A Nuclear and cytoplasmic 99.7 9.2E-18 3.2E-22 117.4 6.9 74 63-137 25-100 (101)
118 2fc8_A NCL protein; structure 99.7 5E-17 1.7E-21 113.8 10.4 79 61-140 11-94 (102)
119 1x5p_A Negative elongation fac 99.7 1.1E-16 3.9E-21 111.0 11.9 77 61-140 11-89 (97)
120 2kt5_A RNA and export factor-b 99.7 9.6E-17 3.3E-21 116.5 11.8 79 61-140 31-116 (124)
121 2div_A TRNA selenocysteine ass 99.7 2.3E-17 8E-22 114.9 8.1 78 61-139 5-95 (99)
122 2nlw_A Eukaryotic translation 99.7 3.2E-17 1.1E-21 115.6 8.8 76 62-138 12-100 (105)
123 2cqp_A RNA-binding protein 12; 99.7 2.2E-17 7.6E-22 114.8 7.6 77 61-138 11-95 (98)
124 2diu_A KIAA0430 protein; struc 99.7 4.5E-17 1.5E-21 110.3 8.7 76 62-140 5-86 (96)
125 3p5t_L Cleavage and polyadenyl 99.7 5.9E-18 2E-22 116.0 4.3 74 66-140 2-85 (90)
126 1s79_A Lupus LA protein; RRM, 99.7 3.9E-17 1.3E-21 114.7 8.5 73 63-137 9-88 (103)
127 3lqv_A PRE-mRNA branch site pr 99.7 7.2E-17 2.5E-21 115.5 10.1 77 62-139 5-86 (115)
128 1p1t_A Cleavage stimulation fa 99.7 1.1E-17 3.8E-22 117.6 5.6 76 63-139 6-89 (104)
129 3zzy_A Polypyrimidine tract-bi 99.7 7.1E-17 2.4E-21 117.2 9.7 75 64-139 27-107 (130)
130 2dis_A Unnamed protein product 99.7 7E-17 2.4E-21 114.5 9.5 78 62-140 5-94 (109)
131 2dh8_A DAZ-associated protein 99.7 3.1E-17 1.1E-21 115.6 7.4 78 61-140 12-97 (105)
132 2dgw_A Probable RNA-binding pr 99.7 1.2E-16 4.3E-21 109.5 10.1 75 62-139 7-88 (91)
133 3ucg_A Polyadenylate-binding p 99.7 6.7E-17 2.3E-21 110.3 8.7 72 65-138 6-85 (89)
134 1fjc_A Nucleolin RBD2, protein 99.7 6.1E-17 2.1E-21 112.1 8.4 78 61-139 12-92 (96)
135 2bz2_A Negative elongation fac 99.7 9.6E-17 3.3E-21 116.0 9.5 76 61-139 35-112 (121)
136 1sjr_A Polypyrimidine tract-bi 99.7 7.7E-17 2.6E-21 121.3 9.2 75 64-139 45-125 (164)
137 2ek1_A RNA-binding protein 12; 99.7 1.9E-17 6.4E-22 114.5 5.4 74 63-137 13-94 (95)
138 1x4b_A Heterogeneous nuclear r 99.7 1.1E-16 3.7E-21 114.8 9.3 76 63-140 25-108 (116)
139 3s7r_A Heterogeneous nuclear r 99.7 1.3E-16 4.5E-21 108.4 9.3 73 61-135 7-87 (87)
140 3n9u_C Cleavage and polyadenyl 99.7 7.5E-17 2.5E-21 121.7 8.7 74 64-138 54-137 (156)
141 2cq4_A RNA binding motif prote 99.7 4.9E-17 1.7E-21 116.3 7.2 74 64-139 24-105 (114)
142 1wez_A HnRNP H', FTP-3, hetero 99.7 1.8E-16 6.1E-21 111.1 9.9 76 61-139 11-93 (102)
143 1x4e_A RNA binding motif, sing 99.7 1.8E-17 6.3E-22 112.2 4.6 72 63-135 3-82 (85)
144 2cqg_A TDP-43, TAR DNA-binding 99.7 3.3E-16 1.1E-20 109.9 11.0 77 61-140 11-95 (103)
145 2jwn_A Embryonic polyadenylate 99.7 1.5E-16 5E-21 115.5 9.6 74 64-139 35-116 (124)
146 2rs2_A Musashi-1, RNA-binding 99.7 1.9E-16 6.4E-21 112.4 9.9 78 61-140 21-106 (109)
147 1x5o_A RNA binding motif, sing 99.7 4E-16 1.4E-20 111.5 11.6 77 61-138 21-112 (114)
148 2hgl_A HNRPF protein, heteroge 99.7 5.8E-17 2E-21 119.3 7.0 115 8-138 1-125 (136)
149 1wg5_A Heterogeneous nuclear r 99.7 2.8E-16 9.5E-21 110.5 10.2 76 62-139 12-95 (104)
150 1wg1_A KIAA1579 protein, homol 99.7 9.7E-17 3.3E-21 109.4 7.6 73 64-138 4-78 (88)
151 2j76_E EIF-4B, EIF4B, eukaryot 99.7 5.9E-17 2E-21 113.2 6.7 76 61-139 15-99 (100)
152 2krb_A Eukaryotic translation 99.7 6.7E-17 2.3E-21 108.4 6.5 66 66-132 2-80 (81)
153 2m2b_A RNA-binding protein 10; 99.7 1.1E-16 3.8E-21 117.3 8.2 77 61-139 19-109 (131)
154 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.6E-16 9.1E-21 116.4 9.9 75 60-135 58-140 (140)
155 2e44_A Insulin-like growth fac 99.7 3.5E-16 1.2E-20 108.3 9.7 76 63-139 13-93 (96)
156 2e5g_A U6 snRNA-specific termi 99.7 4.3E-16 1.5E-20 107.5 10.0 75 63-139 6-83 (94)
157 2mss_A Protein (musashi1); RNA 99.7 7.2E-17 2.5E-21 106.6 5.7 67 67-135 1-75 (75)
158 2cpy_A RNA-binding protein 12; 99.7 1.7E-16 5.7E-21 113.5 7.9 77 61-139 11-95 (114)
159 1wel_A RNA-binding protein 12; 99.7 1.1E-16 3.8E-21 116.2 6.9 76 61-138 21-104 (124)
160 2f3j_A RNA and export factor b 99.7 2.9E-16 9.8E-21 120.9 9.3 77 61-138 84-167 (177)
161 1fj7_A Nucleolin RBD1, protein 99.7 6.9E-17 2.4E-21 112.9 5.3 77 61-139 13-96 (101)
162 2db1_A Heterogeneous nuclear r 99.7 1.7E-16 5.8E-21 114.2 7.4 75 62-138 14-98 (118)
163 3egn_A RNA-binding protein 40; 99.7 1.9E-16 6.6E-21 117.7 7.8 79 61-140 41-132 (143)
164 3tyt_A Heterogeneous nuclear r 99.7 4.3E-16 1.5E-20 122.8 10.2 76 63-139 2-81 (205)
165 2ki2_A SS-DNA binding protein 99.7 5.8E-17 2E-21 110.9 4.3 72 66-139 2-81 (90)
166 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.1E-16 3.9E-21 106.1 5.4 68 66-135 1-76 (77)
167 2lcw_A RNA-binding protein FUS 99.5 1E-17 3.5E-22 120.2 0.0 78 62-140 4-97 (116)
168 3d2w_A TAR DNA-binding protein 99.6 7.9E-16 2.7E-20 105.1 9.2 74 61-139 7-85 (89)
169 2dnn_A RNA-binding protein 12; 99.6 4.5E-16 1.5E-20 110.2 8.1 72 64-138 15-93 (109)
170 3q2s_C Cleavage and polyadenyl 99.6 2.3E-16 7.8E-21 126.4 7.2 74 64-138 67-150 (229)
171 2lmi_A GRSF-1, G-rich sequence 99.6 2.1E-16 7.3E-21 111.7 6.0 76 61-138 7-92 (107)
172 2hzc_A Splicing factor U2AF 65 99.6 6.7E-16 2.3E-20 104.8 8.0 70 63-134 4-86 (87)
173 1wf0_A TDP-43, TAR DNA-binding 99.6 5.7E-16 1.9E-20 105.5 6.9 75 63-140 3-80 (88)
174 1iqt_A AUF1, heterogeneous nuc 99.6 4.3E-16 1.5E-20 102.8 3.9 67 67-135 1-75 (75)
175 3u1l_A PRE-mRNA-splicing facto 99.6 1.8E-15 6.2E-20 121.1 7.9 76 62-138 131-229 (240)
176 4f02_A Polyadenylate-binding p 99.6 3.7E-15 1.3E-19 118.1 9.4 76 62-138 12-95 (213)
177 1b7f_A Protein (SXL-lethal pro 99.6 6E-15 2E-19 112.0 10.1 75 64-139 2-84 (168)
178 2dit_A HIV TAT specific factor 99.6 1E-14 3.5E-19 103.8 10.6 78 61-139 11-103 (112)
179 2hgm_A HNRPF protein, heteroge 99.6 3.6E-15 1.2E-19 108.1 7.6 75 61-138 38-121 (126)
180 2dha_A FLJ20171 protein; RRM d 99.6 1.3E-15 4.4E-20 110.1 5.2 74 63-138 21-105 (123)
181 2xs2_A Deleted in azoospermia- 99.6 1.3E-15 4.6E-20 106.5 5.0 75 63-140 7-88 (102)
182 1fxl_A Paraneoplastic encephal 99.6 9.3E-15 3.2E-19 110.6 9.5 74 65-139 2-83 (167)
183 2pe8_A Splicing factor 45; RRM 99.6 1.1E-14 3.9E-19 102.3 9.1 76 62-137 5-93 (105)
184 2adc_A Polypyrimidine tract-bi 99.6 6.3E-15 2.1E-19 118.0 8.4 78 61-139 30-111 (229)
185 2voo_A Lupus LA protein; RNA-b 99.5 4.7E-14 1.6E-18 110.0 11.8 116 17-138 63-187 (193)
186 3pgw_A U1-A; protein-RNA compl 99.5 3.1E-14 1.1E-18 117.2 11.0 78 61-139 5-91 (282)
187 3md3_A Nuclear and cytoplasmic 99.5 2.2E-14 7.5E-19 108.4 9.1 73 66-139 1-80 (166)
188 2dnl_A Cytoplasmic polyadenyla 99.5 7.2E-14 2.5E-18 99.7 10.0 69 63-135 6-85 (114)
189 1l3k_A Heterogeneous nuclear r 99.5 3.4E-14 1.2E-18 110.5 8.9 77 61-139 9-93 (196)
190 3sde_A Paraspeckle component 1 99.5 4.7E-14 1.6E-18 115.1 9.7 76 61-137 18-95 (261)
191 2qfj_A FBP-interacting repress 99.5 4.2E-14 1.4E-18 111.7 9.1 74 64-138 27-108 (216)
192 1qm9_A Polypyrimidine tract-bi 99.5 1.9E-14 6.6E-19 112.3 7.0 74 65-139 3-80 (198)
193 3tht_A Alkylated DNA repair pr 99.5 1.3E-13 4.3E-18 116.0 9.1 76 61-136 14-97 (345)
194 2d9o_A DNAJ (HSP40) homolog, s 99.5 5.4E-13 1.8E-17 92.7 10.6 63 76-140 27-92 (100)
195 3v4m_A Splicing factor U2AF 65 99.5 2.1E-13 7.1E-18 95.8 8.4 75 63-137 3-96 (105)
196 2g4b_A Splicing factor U2AF 65 99.5 1.7E-13 5.9E-18 104.3 8.3 73 64-138 3-88 (172)
197 3nmr_A Cugbp ELAV-like family 99.5 2.6E-13 9E-18 103.4 9.2 75 64-139 2-89 (175)
198 2yh0_A Splicing factor U2AF 65 99.4 2.2E-13 7.5E-18 106.1 8.1 74 64-139 3-89 (198)
199 4f25_A Polyadenylate-binding p 99.4 7.9E-14 2.7E-18 99.7 4.5 71 5-81 42-112 (115)
200 2cjk_A Nuclear polyadenylated 99.4 2.6E-13 8.8E-18 102.8 7.3 71 64-137 2-80 (167)
201 3s6e_A RNA-binding protein 39; 99.4 8.5E-13 2.9E-17 93.9 9.4 76 62-137 4-92 (114)
202 1fje_B Nucleolin RBD12, protei 99.4 6.5E-14 2.2E-18 107.1 3.7 77 61-139 9-92 (175)
203 2j8a_A Histone-lysine N-methyl 99.4 2.4E-13 8.3E-18 97.3 6.2 71 66-136 3-94 (136)
204 3ue2_A Poly(U)-binding-splicin 99.4 7.2E-13 2.5E-17 94.9 8.7 75 63-137 18-108 (118)
205 1jmt_A Splicing factor U2AF 35 99.4 1.1E-13 3.7E-18 97.1 2.4 65 70-135 20-103 (104)
206 1owx_A Lupus LA protein, SS-B, 99.4 4.5E-12 1.5E-16 90.4 10.6 77 61-138 14-96 (121)
207 2dnr_A Synaptojanin-1; RRM dom 99.4 2.9E-12 9.9E-17 86.0 8.2 77 61-138 3-86 (91)
208 4fxv_A ELAV-like protein 1; RN 99.2 3.2E-11 1.1E-15 83.7 5.1 43 3-47 56-98 (99)
209 3pgw_S U1-70K; protein-RNA com 99.2 3.7E-10 1.3E-14 98.4 12.8 45 3-49 139-183 (437)
210 2hvz_A Splicing factor, argini 99.1 3.8E-11 1.3E-15 83.4 5.1 64 7-73 36-99 (101)
211 3lqv_A PRE-mRNA branch site pr 99.1 8.2E-12 2.8E-16 89.0 1.5 68 3-92 42-109 (115)
212 1ufw_A Synaptojanin 2; RNP dom 99.1 5.8E-11 2E-15 80.0 4.8 73 61-135 11-92 (95)
213 2lxi_A RNA-binding protein 10; 99.1 8.3E-11 2.8E-15 80.2 5.3 47 3-51 39-86 (91)
214 2lkz_A RNA-binding protein 5; 99.1 1E-10 3.5E-15 80.4 5.2 45 3-47 48-94 (95)
215 2wbr_A GW182, gawky, LD47780P; 99.1 1.3E-10 4.5E-15 77.8 4.7 39 6-46 41-79 (89)
216 2a3j_A U1 small nuclear ribonu 99.1 1.5E-10 5.2E-15 83.8 5.2 45 3-49 67-111 (127)
217 3p5t_L Cleavage and polyadenyl 99.0 7.4E-11 2.5E-15 80.2 3.0 46 3-50 40-85 (90)
218 3s8s_A Histone-lysine N-methyl 99.0 2E-10 6.9E-15 81.1 5.2 45 3-49 43-87 (110)
219 3md1_A Nuclear and cytoplasmic 99.0 2.8E-10 9.4E-15 75.9 5.5 45 3-49 38-82 (83)
220 2fc8_A NCL protein; structure 99.0 3.7E-10 1.3E-14 78.4 6.1 47 3-51 49-95 (102)
221 1x5t_A Splicing factor 3B subu 99.0 4.8E-10 1.6E-14 77.0 6.4 47 3-51 43-89 (96)
222 1whw_A Hypothetical protein ri 99.0 7.5E-10 2.6E-14 76.4 7.0 46 4-51 46-91 (99)
223 2dgo_A Cytotoxic granule-assoc 99.0 8.6E-10 2.9E-14 78.3 7.5 47 4-52 53-99 (115)
224 3bs9_A Nucleolysin TIA-1 isofo 99.0 3.4E-10 1.2E-14 76.2 5.0 43 4-48 44-86 (87)
225 2cqb_A Peptidyl-prolyl CIS-tra 99.0 5.6E-10 1.9E-14 77.5 6.0 47 3-51 49-95 (102)
226 2dnz_A Probable RNA-binding pr 99.0 9.2E-10 3.2E-14 75.3 6.9 46 4-51 43-88 (95)
227 2dnm_A SRP46 splicing factor; 99.0 6.1E-10 2.1E-14 77.5 5.8 46 4-51 51-96 (103)
228 1x5u_A Splicing factor 3B subu 99.0 8.6E-10 2.9E-14 77.0 6.4 46 4-51 53-98 (105)
229 2cq0_A Eukaryotic translation 99.0 6.8E-10 2.3E-14 77.3 5.9 46 4-51 53-98 (103)
230 2do4_A Squamous cell carcinoma 99.0 6.8E-10 2.3E-14 76.8 5.8 45 4-50 54-98 (100)
231 2cpe_A RNA-binding protein EWS 99.0 8.1E-10 2.8E-14 78.2 6.3 47 3-51 60-106 (113)
232 3ns6_A Eukaryotic translation 99.0 4.1E-10 1.4E-14 78.1 4.6 43 4-48 50-93 (100)
233 2x1f_A MRNA 3'-END-processing 99.0 7.1E-10 2.4E-14 76.2 5.8 45 4-50 40-84 (96)
234 2fc9_A NCL protein; structure 99.0 7.6E-10 2.6E-14 76.7 6.0 46 3-50 48-93 (101)
235 2d9p_A Polyadenylate-binding p 99.0 9.2E-10 3.1E-14 76.6 6.4 46 4-51 51-96 (103)
236 2fy1_A RNA-binding motif prote 99.0 1.3E-09 4.5E-14 77.7 7.3 46 4-51 44-89 (116)
237 1x5s_A Cold-inducible RNA-bind 99.0 9.7E-10 3.3E-14 76.3 6.4 46 4-51 50-95 (102)
238 2cpi_A CCR4-NOT transcription 99.0 5.9E-10 2E-14 78.8 5.4 42 6-49 61-102 (111)
239 3mdf_A Peptidyl-prolyl CIS-tra 99.0 5.3E-10 1.8E-14 74.9 4.8 42 3-46 44-85 (85)
240 1x4a_A Splicing factor, argini 99.0 8.1E-10 2.8E-14 77.7 5.9 47 3-51 56-102 (109)
241 1p27_B RNA-binding protein 8A; 99.0 7.1E-10 2.4E-14 77.6 5.4 44 4-49 61-104 (106)
242 2cpx_A Hypothetical protein FL 99.0 9.2E-10 3.1E-14 78.1 6.0 46 4-51 63-108 (115)
243 3r27_A HnRNP L, heterogeneous 99.0 5.2E-10 1.8E-14 77.3 4.5 44 6-49 55-98 (100)
244 2cqp_A RNA-binding protein 12; 99.0 8.5E-10 2.9E-14 76.0 5.5 44 3-48 52-95 (98)
245 2cph_A RNA binding motif prote 99.0 1.3E-09 4.6E-14 76.2 6.6 46 4-51 54-100 (107)
246 2la6_A RNA-binding protein FUS 99.0 7E-10 2.4E-14 76.7 5.0 42 3-46 58-99 (99)
247 2dgs_A DAZ-associated protein 99.0 1.6E-09 5.4E-14 74.8 6.8 45 4-51 48-92 (99)
248 2e5h_A Zinc finger CCHC-type a 99.0 8.1E-10 2.8E-14 75.5 5.3 41 4-46 54-94 (94)
249 2nlw_A Eukaryotic translation 99.0 7.6E-10 2.6E-14 77.4 5.2 44 3-48 56-100 (105)
250 1fj7_A Nucleolin RBD1, protein 98.9 7E-10 2.4E-14 76.9 4.8 45 3-50 53-97 (101)
251 2dis_A Unnamed protein product 98.9 2.2E-09 7.7E-14 75.4 7.5 46 4-51 48-95 (109)
252 2cpf_A RNA binding motif prote 98.9 8.3E-10 2.9E-14 76.0 5.1 46 4-51 46-91 (98)
253 1nu4_A U1A RNA binding domain; 98.9 4.5E-10 1.5E-14 77.2 3.6 45 3-49 46-90 (97)
254 1fjc_A Nucleolin RBD2, protein 98.9 7.4E-10 2.5E-14 76.0 4.7 46 3-50 48-93 (96)
255 1oo0_B CG8781-PA, drosophila Y 98.9 1.1E-09 3.6E-14 77.2 5.6 45 3-49 63-107 (110)
256 2kxn_B Transformer-2 protein h 98.9 9.6E-10 3.3E-14 79.9 5.4 45 3-49 83-127 (129)
257 2cpz_A CUG triplet repeat RNA- 98.9 9.7E-10 3.3E-14 78.1 5.3 46 4-51 63-108 (115)
258 2e5j_A Methenyltetrahydrofolat 98.9 9.4E-10 3.2E-14 75.7 5.0 43 5-49 53-95 (97)
259 2dng_A Eukaryotic translation 98.9 1.3E-09 4.5E-14 75.8 5.7 45 4-51 52-96 (103)
260 2cqc_A Arginine/serine-rich sp 98.9 1E-09 3.4E-14 75.1 5.0 42 4-47 53-94 (95)
261 2cqi_A Nucleolysin TIAR; RNA r 98.9 2E-09 6.8E-14 74.9 6.5 44 6-51 53-96 (103)
262 2dnh_A Bruno-like 5, RNA bindi 98.9 1.6E-09 5.3E-14 75.6 6.0 46 4-51 52-100 (105)
263 1jmt_A Splicing factor U2AF 35 98.9 8.8E-10 3E-14 77.0 4.6 40 4-45 64-103 (104)
264 2dgw_A Probable RNA-binding pr 98.9 1.1E-09 3.9E-14 74.3 5.0 44 3-49 45-88 (91)
265 2pe8_A Splicing factor 45; RRM 98.9 1.2E-09 4.2E-14 76.4 5.2 41 5-47 53-93 (105)
266 2ek1_A RNA-binding protein 12; 98.9 1.1E-09 3.7E-14 75.0 4.8 42 3-46 52-93 (95)
267 2jrs_A RNA-binding protein 39; 98.9 1.1E-09 3.9E-14 76.9 5.0 43 4-48 64-106 (108)
268 3ex7_B RNA-binding protein 8A; 98.9 1.6E-09 5.5E-14 78.2 5.8 46 4-51 60-105 (126)
269 2dgv_A HnRNP M, heterogeneous 98.9 1.2E-09 4.1E-14 74.3 4.8 46 3-50 43-88 (92)
270 1x4h_A RNA-binding protein 28; 98.9 2.9E-09 9.9E-14 75.0 6.9 46 4-51 53-104 (111)
271 1wi8_A EIF-4B, eukaryotic tran 98.9 2.3E-09 7.9E-14 74.7 6.3 44 5-51 54-97 (104)
272 2jvr_A Nucleolar protein 3; RN 98.9 1.5E-09 5E-14 76.7 5.2 41 6-48 65-105 (111)
273 1p1t_A Cleavage stimulation fa 98.9 1.3E-09 4.5E-14 75.8 4.7 45 4-50 46-90 (104)
274 2dhg_A TRNA selenocysteine ass 98.9 1.8E-09 6.1E-14 75.2 5.3 46 4-51 47-93 (104)
275 2j76_E EIF-4B, EIF4B, eukaryot 98.9 1.3E-09 4.3E-14 75.6 4.4 42 4-48 57-98 (100)
276 3ulh_A THO complex subunit 4; 98.9 1.6E-09 5.5E-14 75.9 5.0 41 4-46 66-106 (107)
277 2cq3_A RNA-binding protein 9; 98.9 3.3E-09 1.1E-13 73.7 6.5 44 6-51 53-96 (103)
278 2do0_A HnRNP M, heterogeneous 98.9 5.1E-09 1.7E-13 74.1 7.3 45 4-50 52-96 (114)
279 2err_A Ataxin-2-binding protei 98.9 2.3E-09 7.7E-14 75.5 5.4 42 5-48 66-107 (109)
280 3egn_A RNA-binding protein 40; 98.9 1.4E-09 4.9E-14 80.3 4.5 46 3-50 87-132 (143)
281 4a8x_A RNA-binding protein wit 98.9 2.2E-09 7.5E-14 72.3 5.1 41 7-49 46-86 (88)
282 3ucg_A Polyadenylate-binding p 98.9 2.4E-09 8E-14 72.3 5.2 43 4-49 44-86 (89)
283 3n9u_C Cleavage and polyadenyl 98.9 1.7E-09 5.8E-14 81.2 4.9 43 3-47 94-136 (156)
284 2dgx_A KIAA0430 protein; RRM d 98.9 2.8E-09 9.6E-14 73.2 5.5 40 8-49 52-91 (96)
285 1u6f_A Tcubp1, RNA-binding pro 98.9 3.1E-09 1E-13 78.0 6.1 46 4-51 80-125 (139)
286 1x5p_A Negative elongation fac 98.9 3E-09 1E-13 73.1 5.7 44 6-51 47-90 (97)
287 2div_A TRNA selenocysteine ass 98.9 1.6E-09 5.6E-14 74.7 4.3 44 4-49 48-95 (99)
288 2ywk_A Putative RNA-binding pr 98.9 2E-09 6.7E-14 73.7 4.6 42 4-47 53-94 (95)
289 2dgp_A Bruno-like 4, RNA bindi 98.9 3.9E-09 1.3E-13 73.7 6.3 48 4-51 51-99 (106)
290 2kn4_A Immunoglobulin G-bindin 98.9 4.2E-09 1.4E-13 79.0 6.7 46 4-51 108-153 (158)
291 2kt5_A RNA and export factor-b 98.9 4.2E-09 1.4E-13 75.8 6.4 46 4-51 72-117 (124)
292 2krb_A Eukaryotic translation 98.9 1E-09 3.5E-14 72.9 2.9 38 3-42 42-80 (81)
293 3v4m_A Splicing factor U2AF 65 98.9 2.8E-09 9.7E-14 74.5 5.3 40 6-47 57-96 (105)
294 2mss_A Protein (musashi1); RNA 98.8 2E-09 7E-14 70.2 4.1 39 4-45 37-75 (75)
295 1h2v_Z 20 kDa nuclear CAP bind 98.8 3.4E-09 1.2E-13 79.4 5.8 45 4-50 77-121 (156)
296 2diu_A KIAA0430 protein; struc 98.8 2.8E-09 9.6E-14 72.1 4.7 42 8-51 46-87 (96)
297 2dnq_A RNA-binding protein 4B; 98.8 5.2E-09 1.8E-13 70.9 6.0 42 8-51 42-83 (90)
298 2cqh_A IGF-II mRNA-binding pro 98.8 3.7E-09 1.3E-13 72.0 5.3 44 6-51 42-86 (93)
299 1wg1_A KIAA1579 protein, homol 98.8 2.5E-09 8.4E-14 72.2 4.3 41 6-48 38-78 (88)
300 2khc_A Testis-specific RNP-typ 98.8 2E-09 7E-14 76.7 4.1 42 3-46 77-118 (118)
301 1wex_A Hypothetical protein (r 98.8 4.9E-09 1.7E-13 73.2 5.9 45 7-51 50-94 (104)
302 2ki2_A SS-DNA binding protein 98.8 2.2E-09 7.5E-14 72.7 3.8 44 4-50 39-82 (90)
303 2lea_A Serine/arginine-rich sp 98.8 2.9E-09 1E-13 77.9 4.8 46 4-51 85-130 (135)
304 1x4d_A Matrin 3; structural ge 98.8 3.2E-09 1.1E-13 73.7 4.6 45 6-50 50-94 (102)
305 1x4f_A Matrin 3; structural ge 98.8 3.3E-09 1.1E-13 74.9 4.5 45 6-50 60-104 (112)
306 2dgu_A Heterogeneous nuclear r 98.8 1.2E-08 4E-13 71.0 7.2 44 7-52 44-87 (103)
307 1wel_A RNA-binding protein 12; 98.8 2.6E-09 8.9E-14 77.0 3.9 43 3-48 62-104 (124)
308 3dxb_A Thioredoxin N-terminall 98.8 3.1E-08 1.1E-12 78.5 10.5 73 65-137 124-212 (222)
309 3ue2_A Poly(U)-binding-splicin 98.8 3.7E-09 1.3E-13 75.4 4.4 41 5-47 68-108 (118)
310 2cq4_A RNA binding motif prote 98.8 4.1E-09 1.4E-13 74.7 4.6 43 4-49 63-105 (114)
311 2cpj_A Non-POU domain-containi 98.8 5.5E-09 1.9E-13 72.1 5.1 43 6-50 49-91 (99)
312 2dit_A HIV TAT specific factor 98.8 8E-09 2.7E-13 73.0 6.1 43 6-50 62-104 (112)
313 2cqd_A RNA-binding region cont 98.8 1.1E-08 3.7E-13 72.7 6.8 44 4-50 55-98 (116)
314 2cpd_A Apobec-1 stimulating pr 98.8 6.7E-09 2.3E-13 71.6 5.5 42 7-50 50-91 (99)
315 1why_A Hypothetical protein ri 98.8 6.6E-09 2.2E-13 71.4 5.4 40 8-49 53-94 (97)
316 1rk8_A CG8781-PA, CG8781-PA pr 98.8 4.6E-09 1.6E-13 79.5 4.9 46 3-50 109-154 (165)
317 1sjr_A Polypyrimidine tract-bi 98.8 8.2E-09 2.8E-13 77.5 6.1 44 6-49 82-125 (164)
318 2xnq_A Nuclear polyadenylated 98.8 6.9E-09 2.3E-13 71.4 5.2 40 7-48 56-95 (97)
319 2bz2_A Negative elongation fac 98.8 7.1E-09 2.4E-13 74.4 5.5 43 6-50 71-113 (121)
320 2jwn_A Embryonic polyadenylate 98.8 1E-08 3.5E-13 73.7 6.3 45 3-50 73-117 (124)
321 1wez_A HnRNP H', FTP-3, hetero 98.8 4.3E-09 1.5E-13 73.2 4.1 44 3-49 50-93 (102)
322 2m2b_A RNA-binding protein 10; 98.8 2.6E-09 9E-14 77.7 3.1 44 4-50 63-110 (131)
323 1sjq_A Polypyrimidine tract-bi 98.8 5.2E-09 1.8E-13 72.9 4.3 43 7-51 51-95 (105)
324 1x4g_A Nucleolysin TIAR; struc 98.8 1.1E-08 3.7E-13 71.9 6.0 42 8-51 61-102 (109)
325 2dh8_A DAZ-associated protein 98.8 5.2E-09 1.8E-13 73.0 4.2 46 3-51 53-98 (105)
326 2dnn_A RNA-binding protein 12; 98.8 8.2E-09 2.8E-13 72.6 5.2 42 3-47 51-92 (109)
327 2jvo_A Nucleolar protein 3; nu 98.8 6.4E-09 2.2E-13 73.1 4.6 41 8-50 65-105 (108)
328 1uaw_A Mouse-musashi-1; RNP-ty 98.8 5.6E-09 1.9E-13 68.4 4.0 39 4-45 38-76 (77)
329 2dnp_A RNA-binding protein 14; 98.8 1.3E-08 4.3E-13 68.9 5.9 42 8-51 43-84 (90)
330 2dgt_A RNA-binding protein 30; 98.8 1.6E-08 5.3E-13 68.8 6.3 42 8-51 44-85 (92)
331 2la4_A Nuclear and cytoplasmic 98.8 3.9E-09 1.3E-13 73.1 3.3 40 6-47 61-100 (101)
332 2kvi_A Nuclear polyadenylated 98.8 6.9E-09 2.3E-13 71.2 4.4 42 7-50 44-85 (96)
333 2cq1_A PTB-like protein L; RRM 98.8 7.6E-09 2.6E-13 71.8 4.6 43 7-51 50-94 (101)
334 2rs2_A Musashi-1, RNA-binding 98.7 1.1E-08 3.8E-13 71.9 5.5 44 4-50 63-106 (109)
335 1wf1_A RNA-binding protein RAL 98.7 8.6E-09 2.9E-13 72.5 4.9 42 7-50 61-102 (110)
336 1whx_A Hypothetical protein ri 98.7 9.6E-09 3.3E-13 72.5 5.0 42 6-49 44-85 (111)
337 3q2s_C Cleavage and polyadenyl 98.7 5.4E-09 1.8E-13 83.4 4.1 43 3-47 107-149 (229)
338 1x4b_A Heterogeneous nuclear r 98.7 1.2E-08 4E-13 72.5 5.4 46 3-51 64-109 (116)
339 1wg5_A Heterogeneous nuclear r 98.7 1.6E-08 5.6E-13 70.4 6.0 44 3-49 52-95 (104)
340 2cpy_A RNA-binding protein 12; 98.7 7.5E-09 2.5E-13 73.4 4.2 44 3-49 52-95 (114)
341 2lcw_A RNA-binding protein FUS 98.2 1.2E-09 4.2E-14 77.7 0.0 46 4-51 53-98 (116)
342 2ad9_A Polypyrimidine tract-bi 98.7 1.6E-08 5.6E-13 72.1 5.9 44 7-52 66-111 (119)
343 1x5o_A RNA binding motif, sing 98.7 1.4E-08 4.9E-13 71.8 5.4 45 4-48 62-112 (114)
344 1x4e_A RNA binding motif, sing 98.7 2.3E-09 7.9E-14 71.8 1.2 42 3-46 42-83 (85)
345 2ytc_A PRE-mRNA-splicing facto 98.7 9.2E-09 3.1E-13 68.7 4.1 38 7-46 47-85 (85)
346 2cq2_A Hypothetical protein LO 98.7 1.4E-08 4.8E-13 71.8 5.2 43 7-49 62-107 (114)
347 2db1_A Heterogeneous nuclear r 98.7 6.9E-09 2.4E-13 74.1 3.6 42 4-48 57-98 (118)
348 1s79_A Lupus LA protein; RRM, 98.7 1E-08 3.4E-13 71.4 4.2 41 4-47 48-88 (103)
349 1x4c_A Splicing factor, argini 98.7 1.5E-08 5.1E-13 71.1 4.9 40 9-50 51-95 (108)
350 3s6e_A RNA-binding protein 39; 98.7 1.3E-08 4.3E-13 72.2 4.3 39 7-47 54-92 (114)
351 3s7r_A Heterogeneous nuclear r 98.7 1.8E-08 6.1E-13 67.7 4.6 40 3-45 48-87 (87)
352 2lmi_A GRSF-1, G-rich sequence 98.7 1.2E-08 3.9E-13 71.6 3.7 42 4-48 51-92 (107)
353 2e5i_A Heterogeneous nuclear r 98.7 2.9E-08 1E-12 71.3 5.6 42 8-49 61-103 (124)
354 3zzy_A Polypyrimidine tract-bi 98.7 2.3E-08 8E-13 72.3 5.1 43 7-49 64-107 (130)
355 2hgl_A HNRPF protein, heteroge 98.7 1.3E-08 4.3E-13 74.6 3.7 41 4-47 84-124 (136)
356 1iqt_A AUF1, heterogeneous nuc 98.6 1.5E-08 5.3E-13 65.9 3.4 39 4-45 37-75 (75)
357 2cqg_A TDP-43, TAR DNA-binding 98.6 4.4E-08 1.5E-12 67.9 5.7 44 4-51 53-96 (103)
358 2d9o_A DNAJ (HSP40) homolog, s 98.6 4E-08 1.4E-12 67.9 5.2 42 5-50 51-92 (100)
359 2hzc_A Splicing factor U2AF 65 98.6 3.2E-08 1.1E-12 66.3 4.2 36 6-44 51-86 (87)
360 2l9w_A U4/U6 snRNA-associated- 98.6 1.9E-07 6.6E-12 64.1 7.5 70 64-134 20-96 (117)
361 2hgn_A Heterogeneous nuclear r 98.6 1.5E-08 5E-13 74.5 2.1 44 3-49 81-124 (139)
362 2hgm_A HNRPF protein, heteroge 98.6 4E-08 1.4E-12 70.8 3.7 41 4-47 80-120 (126)
363 2dha_A FLJ20171 protein; RRM d 98.5 3.2E-08 1.1E-12 71.1 2.3 42 3-47 63-104 (123)
364 3beg_B Splicing factor, argini 98.5 1.3E-07 4.4E-12 67.0 4.8 38 9-48 52-94 (115)
365 2e44_A Insulin-like growth fac 98.5 3.3E-07 1.1E-11 62.5 6.2 39 8-48 54-92 (96)
366 2xs2_A Deleted in azoospermia- 98.4 7.2E-08 2.5E-12 66.7 2.4 43 4-50 46-88 (102)
367 2e5g_A U6 snRNA-specific termi 98.4 2.2E-07 7.5E-12 63.2 4.2 38 10-50 47-84 (94)
368 2dnl_A Cytoplasmic polyadenyla 98.3 4.9E-07 1.7E-11 63.8 4.7 38 5-46 49-86 (114)
369 2j8a_A Histone-lysine N-methyl 98.3 4.9E-07 1.7E-11 64.7 3.5 43 3-47 43-95 (136)
370 3d2w_A TAR DNA-binding protein 98.3 8.7E-07 3E-11 59.7 4.4 40 6-49 46-85 (89)
371 3tht_A Alkylated DNA repair pr 98.2 2.3E-06 8E-11 71.8 6.7 40 7-46 55-97 (345)
372 2dnr_A Synaptojanin-1; RRM dom 98.1 1.7E-06 5.9E-11 57.9 3.8 38 8-48 49-86 (91)
373 1wf0_A TDP-43, TAR DNA-binding 98.0 6.6E-06 2.2E-10 55.0 4.1 41 7-51 41-81 (88)
374 1wey_A Calcipressin 1; structu 97.9 1.4E-05 4.8E-10 54.7 4.8 73 65-138 5-84 (104)
375 2dhx_A Poly (ADP-ribose) polym 97.8 0.0003 1E-08 47.9 10.5 75 63-139 6-85 (104)
376 1whv_A Poly(A)-specific ribonu 97.8 8.6E-05 3E-09 49.9 7.7 55 65-121 16-70 (100)
377 1ufw_A Synaptojanin 2; RNP dom 97.8 1.6E-05 5.4E-10 53.5 3.8 34 10-46 60-93 (95)
378 3ctr_A Poly(A)-specific ribonu 97.7 6.3E-05 2.2E-09 50.8 5.1 54 66-121 7-60 (101)
379 1uw4_A UPF3X; nonsense mediate 97.6 0.00046 1.6E-08 46.3 8.2 70 66-136 2-86 (91)
380 3u1l_A PRE-mRNA-splicing facto 97.5 5.8E-05 2E-09 60.2 3.9 29 6-34 177-205 (240)
381 1wwh_A Nucleoporin 35, nucleop 97.5 0.00035 1.2E-08 49.0 7.4 68 65-135 24-94 (119)
382 3p3d_A Nucleoporin 53; structu 97.0 0.00095 3.2E-08 47.5 4.9 69 65-136 7-97 (132)
383 2l08_A Regulator of nonsense t 96.9 0.0028 9.7E-08 42.7 6.2 71 65-136 9-94 (97)
384 2l9w_A U4/U6 snRNA-associated- 96.6 0.0022 7.6E-08 44.1 4.0 35 8-44 62-96 (117)
385 1owx_A Lupus LA protein, SS-B, 96.1 0.011 3.7E-07 41.8 5.4 37 8-46 55-94 (121)
386 3pq1_A Poly(A) RNA polymerase; 95.6 0.0054 1.9E-07 53.3 2.7 53 65-119 53-108 (464)
387 2i2y_A Fusion protein consists 95.5 0.0023 7.9E-08 46.8 0.1 38 99-137 12-50 (150)
388 1wey_A Calcipressin 1; structu 95.1 0.022 7.4E-07 38.9 3.8 36 11-48 49-84 (104)
389 3d45_A Poly(A)-specific ribonu 93.4 0.21 7.2E-06 44.0 7.5 56 65-122 440-495 (507)
390 4eyt_A Telomerase associated p 93.0 1 3.5E-05 29.5 8.4 57 63-120 10-66 (129)
391 2g0c_A ATP-dependent RNA helic 92.3 0.33 1.1E-05 30.8 5.4 60 76-136 11-75 (76)
392 2dhx_A Poly (ADP-ribose) polym 92.2 0.22 7.5E-06 33.8 4.6 51 9-78 48-98 (104)
393 3p3d_A Nucleoporin 53; structu 83.7 1.2 4.2E-05 31.5 3.9 36 8-46 62-97 (132)
394 1wwh_A Nucleoporin 35, nucleop 79.4 2.5 8.7E-05 29.3 4.2 37 8-46 59-95 (119)
395 2g0c_A ATP-dependent RNA helic 77.2 2.1 7.1E-05 26.9 3.1 36 8-46 40-75 (76)
396 3ts2_A Protein LIN-28 homolog 73.3 0.86 2.9E-05 33.1 0.5 28 81-108 2-29 (148)
397 1uw4_A UPF3X; nonsense mediate 67.5 4.5 0.00015 26.6 3.0 27 8-34 45-71 (91)
398 1whv_A Poly(A)-specific ribonu 64.1 5.3 0.00018 26.7 2.8 21 9-29 50-70 (100)
399 3lpe_A Putative transcription 55.8 34 0.0011 22.2 5.7 32 92-123 39-73 (92)
400 2e5p_A Protein PHF1, PHD finge 55.0 6.4 0.00022 24.1 1.8 20 90-109 27-46 (68)
401 2l08_A Regulator of nonsense t 54.8 7.4 0.00025 25.9 2.2 26 9-34 54-79 (97)
402 3ctr_A Poly(A)-specific ribonu 54.2 5.7 0.00019 26.6 1.6 21 9-29 40-60 (101)
403 4eyt_A Telomerase associated p 53.3 21 0.00072 23.2 4.2 33 8-44 46-78 (129)
404 3lpe_A Putative transcription 52.6 10 0.00035 24.8 2.7 25 7-31 49-73 (92)
405 2m0o_A PHD finger protein 1; t 50.7 8.1 0.00028 24.3 1.8 20 90-109 44-63 (79)
406 2eqj_A Metal-response element- 46.5 10 0.00036 23.2 1.8 19 91-109 32-50 (66)
407 4e8u_A Putative uncharacterize 45.5 37 0.0013 25.1 5.0 44 66-110 13-72 (172)
408 3h7h_B Transcription elongatio 42.8 16 0.00056 24.6 2.6 27 6-32 49-75 (106)
409 2e5q_A PHD finger protein 19; 41.8 16 0.00054 22.0 2.0 14 6-19 33-46 (63)
410 4hcz_A PHD finger protein 1; p 38.2 17 0.00059 21.5 1.8 19 91-109 22-40 (58)
411 2cu1_A Mitogen-activated prote 35.0 35 0.0012 22.7 3.0 62 75-137 25-87 (103)
412 2npt_B Mitogen-activated prote 32.3 86 0.0029 20.6 4.5 49 75-123 37-86 (100)
413 3fry_A Probable copper-exporti 31.8 81 0.0028 18.6 5.0 53 65-119 6-60 (73)
414 2jrh_A Mitogen-activated prote 31.5 95 0.0032 20.1 4.6 61 75-136 21-82 (94)
415 3p8b_B Transcription antitermi 29.2 37 0.0013 24.2 2.7 26 7-32 42-67 (152)
416 2c60_A Human mitogen-activated 28.4 94 0.0032 20.7 4.3 49 75-123 48-97 (111)
417 3eye_A PTS system N-acetylgala 27.1 1.7E+02 0.0058 21.3 6.1 19 8-26 81-99 (168)
418 2k5n_A Putative cold-shock pro 27.1 32 0.0011 21.4 1.8 20 90-109 4-23 (74)
419 2xk0_A Polycomb protein PCL; t 26.2 37 0.0013 20.8 1.9 18 91-110 34-51 (69)
420 2ytv_A Cold shock domain-conta 26.0 20 0.00068 22.7 0.7 12 7-18 17-28 (79)
421 2kcm_A Cold shock domain famil 25.0 36 0.0012 21.2 1.8 47 91-137 3-54 (74)
422 1x65_A UNR protein; cell-free 25.0 24 0.00082 22.9 1.0 10 8-17 18-27 (89)
423 3a0j_A Cold shock protein; OB- 24.7 30 0.001 21.4 1.4 20 90-109 3-22 (73)
424 3lfj_A Manxb, phosphotransfera 24.3 1.7E+02 0.0059 21.7 5.7 31 8-44 97-127 (187)
425 1wfq_A UNR protein; beta-barre 24.1 37 0.0013 22.0 1.8 10 8-17 28-37 (89)
426 2od0_A Hypothetical protein VP 23.9 54 0.0018 21.7 2.6 24 78-101 4-27 (105)
427 2yty_A Cold shock domain-conta 23.6 34 0.0011 22.1 1.5 10 8-17 28-37 (88)
428 1g6p_A Cold shock protein TMCS 23.3 34 0.0012 20.7 1.4 19 91-109 3-21 (66)
429 3aqq_A Calcium-regulated heat 22.9 39 0.0013 24.2 1.8 21 89-109 63-83 (147)
430 3j21_T 50S ribosomal protein L 22.8 1.6E+02 0.0054 18.9 4.8 45 75-119 31-82 (86)
431 3ulj_A LIN28B, DNA-binding pro 22.6 23 0.00078 23.1 0.5 19 88-106 8-26 (90)
432 2lsl_A Telomerase associated p 28.0 18 0.00063 23.8 0.0 40 99-138 76-122 (137)
433 1c9o_A CSPB, cold-shock protei 22.2 45 0.0015 20.1 1.8 20 90-109 3-22 (66)
434 3cam_A Cold-shock domain famil 21.9 46 0.0016 20.1 1.8 20 90-109 3-22 (67)
435 2ytx_A Cold shock domain-conta 21.8 38 0.0013 22.3 1.5 11 7-17 27-37 (97)
436 1h95_A CSD, Y-box binding prot 21.7 37 0.0013 21.3 1.4 20 90-109 10-29 (79)
437 1nz8_A Transcription antitermi 21.3 75 0.0026 21.5 3.0 26 7-32 61-91 (119)
438 3p3v_A PTS system, N-acetylgal 21.1 2.1E+02 0.007 20.7 5.5 19 8-26 78-96 (163)
439 2hpu_A NOSL protein; alpha bet 21.0 40 0.0014 24.9 1.6 24 10-33 112-135 (175)
440 1gh9_A 8.3 kDa protein (gene M 20.7 30 0.001 21.5 0.7 23 11-33 37-59 (71)
No 1
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.1e-26 Score=176.79 Aligned_cols=122 Identities=21% Similarity=0.430 Sum_probs=110.1
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHH
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERD 82 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~ 82 (240)
++++++|||||+|.+.++|++|++.|||..| .|+.|.|.++...... ...+..+|||+|| |..+++++
T Consensus 36 ~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~i~v~~~~~~~~~---------~~~~~~~l~v~nl-~~~~t~~~ 103 (166)
T 3md3_A 36 KNNKNVNYAFVEYHQSHDANIALQTLNGKQI--ENNIVKINWAFQSQQS---------SSDDTFNLFVGDL-NVNVDDET 103 (166)
T ss_dssp CC-CCEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECCCCCCC---------CCTTCEEEEEESC-CTTCCHHH
T ss_pred CCCCCCCEEEEEeCCHHHHHHHHHHcCCCcc--CCCeeEEEEcCCCCCC---------CCCCCceEEECCC-CCCCCHHH
Confidence 3466799999999999999999999999999 6999999999865432 3456789999999 88999999
Q ss_pred HHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEee
Q 026341 83 IKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136 (240)
Q Consensus 83 l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 136 (240)
|+++|++||.|..+.+. +|+|||+|.+.++|++|+..|||..|+|+.|.|.||+
T Consensus 104 l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 104 LRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred HHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 99999999999999884 5799999999999999999999999999999999986
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.94 E-value=8e-27 Score=185.63 Aligned_cols=124 Identities=23% Similarity=0.442 Sum_probs=111.1
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHH
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERD 82 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~ 82 (240)
.|++++|||||+|.++++|++||+.||+..+ .|+.|.|.++...... ......+|||+|| |..+++++
T Consensus 52 ~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~--~g~~i~~~~~~~~~~~---------~~~~~~~l~v~nl-~~~~t~~~ 119 (213)
T 4f02_A 52 ITRRSLGYAYVNFQQPADAERALDTMNFDVI--KGKPVRIMWSQRDPSL---------RKSGVGNIFIKNL-DKSIDNKA 119 (213)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECCCCTHH---------HHHCTTEEEEESC-CTTCCHHH
T ss_pred CCCCccccccceeCCHHHHHHHHHHhhhhhc--CCcccccccccccccc---------cccccccceECCc-ccccHHHH
Confidence 3678899999999999999999999999999 6999999998754432 1223578999999 89999999
Q ss_pred HHHhhccCCCeEEEEEe------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecC
Q 026341 83 IKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138 (240)
Q Consensus 83 l~~~f~~~G~i~~~~~~------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 138 (240)
|+++|.+||.|..|.|. +|||||+|.+.++|++||+.|||..|+|+.|.|.+|.++
T Consensus 120 l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 120 LYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp HHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred HHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 99999999999999984 689999999999999999999999999999999999764
No 3
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.94 E-value=1.3e-26 Score=178.48 Aligned_cols=123 Identities=22% Similarity=0.380 Sum_probs=109.4
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHH
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERD 82 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~ 82 (240)
.++.++|||||+|.++++|++|++ |||..| .|++|.|.++...... ...+..+|||+|| |..+++++
T Consensus 49 ~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~--~g~~l~v~~~~~~~~~---------~~~~~~~l~v~nl-p~~~t~~~ 115 (175)
T 1fje_B 49 RTGTNRKFGYVDFESAEDLEKALE-LTGLKV--FGNEIKLEKPKGRDSK---------KVRAARTLLAKNL-SFNITEDE 115 (175)
T ss_dssp EEETTTTEEEEEESSHHHHHHHHH-GGGEEE--TTEEEEEECCCCSSCS---------TTGGGGEEEEESC-CSSCCHHH
T ss_pred CCCccccEEEEEECCHHHHHHHHh-cCCCEe--CCeEEEEecCCCcccc---------ccccCCEEEEeCC-CCCCCHHH
Confidence 367789999999999999999995 999999 6999999999865432 3346789999999 88999999
Q ss_pred HHHhhccCCCeEEEEE---eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecC
Q 026341 83 IKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138 (240)
Q Consensus 83 l~~~f~~~G~i~~~~~---~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 138 (240)
|+++|++||.|..+.. .+|||||+|.+.++|++|+..|||..|+|+.|.|.|+.++
T Consensus 116 l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 116 LKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 9999999999988821 3689999999999999999999999999999999999764
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.94 E-value=3.9e-26 Score=174.39 Aligned_cols=118 Identities=29% Similarity=0.468 Sum_probs=107.9
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHH
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDI 83 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l 83 (240)
++.++|||||+|.++++|++|++.|+|..| +|++|.|.|+.+... ..+..+|||+|| |..+++++|
T Consensus 41 ~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~~~~~~~-----------~~~~~~l~v~nl-~~~~t~~~l 106 (168)
T 1b7f_A 41 TGYSYGYAFVDFTSEMDSQRAIKVLNGITV--RNKRLKVSYARPGGE-----------SIKDTNLYVTNL-PRTITDDQL 106 (168)
T ss_dssp TTEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECCCCSS-----------TTTTCEEEEESC-CTTCCHHHH
T ss_pred CCccceEEEEEECCHHHHHHHHHhcCCCEe--CCcEEEEEecCCCcc-----------cCCCCCEEEeCC-CCCCCHHHH
Confidence 667899999999999999999999999999 699999999986543 235789999999 889999999
Q ss_pred HHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccC--cEEEEEEe
Q 026341 84 KRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVD--RVISVEYA 135 (240)
Q Consensus 84 ~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a 135 (240)
+++|++||.|..+.+. +|+|||+|.+.++|++|+..|||..|.| ++|.|.||
T Consensus 107 ~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 107 DTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 9999999999999884 4799999999999999999999999988 99999986
No 5
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.94 E-value=3.7e-26 Score=179.14 Aligned_cols=132 Identities=17% Similarity=0.288 Sum_probs=112.6
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCC---------CCCCCCCCCCCCEEEEeccC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRD---------GSKSMANQRPTKTLFVINFD 74 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~---------~~~~~~~~~~~~~l~v~nl~ 74 (240)
++.++|||||+|.++++|++|+ .|||..| .|++|.|.++......... .........+.++|||+||
T Consensus 47 ~~~~~g~afV~F~~~~~A~~Al-~l~g~~~--~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl- 122 (198)
T 2yh0_A 47 INQDKNFAFLEFRSVDETTQAM-AFDGIIF--QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGL- 122 (198)
T ss_dssp EETTTTEEEEEESCSHHHHHHG-GGTTEEE--TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECC-
T ss_pred ecCCCCEEEEEeCCHHHHHHHH-HhcCCEE--cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCC-
Confidence 4567999999999999999999 8999999 6999999998865432211 0011223356799999999
Q ss_pred CCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCC
Q 026341 75 PIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 139 (240)
Q Consensus 75 ~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 139 (240)
|..+++++|+++|.+||.|..|.+. +|||||+|.+.++|++|+..|||..|+|+.|.|.++.+..
T Consensus 123 ~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 123 PNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp CTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 8899999999999999999999884 5799999999999999999999999999999999998764
No 6
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.94 E-value=8e-26 Score=187.00 Aligned_cols=131 Identities=24% Similarity=0.488 Sum_probs=111.5
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCC--CCC------------------------
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHR--DGS------------------------ 56 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~--~~~------------------------ 56 (240)
++++++|||||+|.+.++|++|++.|||..| .|+.|.|+|+........ .+.
T Consensus 47 ~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (282)
T 3pgw_A 47 RSLKMRGQAFVIFKEVSSATNALRSMQGFPF--YDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKA 124 (282)
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHhcCCee--CCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhh
Confidence 4778899999999999999999999999999 699999999976442100 000
Q ss_pred --------------------------------------------------------------------------CCCCCC
Q 026341 57 --------------------------------------------------------------------------KSMANQ 62 (240)
Q Consensus 57 --------------------------------------------------------------------------~~~~~~ 62 (240)
......
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (282)
T 3pgw_A 125 VQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSEN 204 (282)
T ss_pred ccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCC
Confidence 000233
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe---CCeEEEEecCHHHHHHHHHhcCCCccc-CcEEEEEEee
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---RNFAFVQFETQEEATKALESTDRSKLV-DRVISVEYAL 136 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~---kg~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a~ 136 (240)
.++++|||+|| +..+++++|+++|++||.|..|.|. +|||||+|.+.++|++|+..|||..|. |+.|.|+|++
T Consensus 205 ~~~~~l~v~nl-~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 205 PPNHILFLTNL-PEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCEEEEeCC-CCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 46789999999 8899999999999999999999995 489999999999999999999999999 9999999986
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.94 E-value=8.2e-27 Score=185.31 Aligned_cols=133 Identities=19% Similarity=0.326 Sum_probs=110.9
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHH
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDI 83 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l 83 (240)
++.++|||||+|.++++|++|++.||+..| +|+.|.|.++..................+..+|||+|| |..+++++|
T Consensus 66 ~g~~~g~afV~f~~~~~A~~A~~~l~~~~~--~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl-p~~~t~~~l 142 (216)
T 2qfj_A 66 TMKHKGFAFVEYEVPEAAQLALEQMNSVML--GGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASV-HQDLSDDDI 142 (216)
T ss_dssp C-CCCSEEEEEESSHHHHHHHHHHHSSCCC--C-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECC-CTTCCHHHH
T ss_pred CCccCceEEEEeCCHHHHHHHHHHccCCee--CCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCC-CCcCCHHHH
Confidence 677899999999999999999999999998 69999999887544221000000012245789999999 889999999
Q ss_pred HHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCC
Q 026341 84 KRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 139 (240)
Q Consensus 84 ~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 139 (240)
+++|++||.|..|.|. +|||||+|.+.++|++|+..|||..|+|+.|.|.++....
T Consensus 143 ~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 143 KSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred HHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 9999999999999984 5799999999999999999999999999999999998764
No 8
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.93 E-value=8.8e-26 Score=172.02 Aligned_cols=118 Identities=25% Similarity=0.515 Sum_probs=106.6
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHH
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDI 83 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l 83 (240)
++.++|||||+|.++++|++|++.|||..| .|++|.|.++.+... ..+..+|||+|| |..+++++|
T Consensus 40 ~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~~~~~~~-----------~~~~~~l~v~nl-~~~~t~~~l 105 (167)
T 1fxl_A 40 TGQSLGYGFVNYIDPKDAEKAINTLNGLRL--QTKTIKVSYARPSSA-----------SIRDANLYVSGL-PKTMTQKEL 105 (167)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECCCCCG-----------GGTTCEEEEESC-CTTCCHHHH
T ss_pred CCcceeEEEEEECCHHHHHHHHHHcCCCcc--CCceEEEEecCCCcc-----------cCCCCcEEECCC-CCcCCHHHH
Confidence 677899999999999999999999999999 699999999986543 234688999999 889999999
Q ss_pred HHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCc--EEEEEEe
Q 026341 84 KRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDR--VISVEYA 135 (240)
Q Consensus 84 ~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~a 135 (240)
+++|++||.|..+.+. +|+|||+|.+.++|++|++.|||..|.|+ +|.|.||
T Consensus 106 ~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 106 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 9999999999999883 58999999999999999999999999996 4888876
No 9
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.93 E-value=5.5e-26 Score=174.32 Aligned_cols=117 Identities=18% Similarity=0.336 Sum_probs=105.9
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHH
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDI 83 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l 83 (240)
++.++|||||+|.++++|++|+ .|||..| .|++|.|.++..... .....+|||+|| |..+++++|
T Consensus 47 ~~~~~g~afV~f~~~~~A~~A~-~~~~~~~--~g~~i~v~~~~~~~~-----------~~~~~~l~v~nl-p~~~t~~~l 111 (172)
T 2g4b_A 47 INQDKNFAFLEFRSVDETTQAM-AFDGIIF--QGQSLKIRRPHDYQP-----------LPGAHKLFIGGL-PNYLNDDQV 111 (172)
T ss_dssp EETTTTEEEEEESSHHHHHHHG-GGTTCEE--TTEECEEECCSSCCC-----------CTTTTCEEEECC-CTTCCHHHH
T ss_pred ecCCCCEEEEEeCCHHHHHHHH-HhCCcEe--cCceeeecCCcccCC-----------CCCCCEEEEEcC-CCcCCHHHH
Confidence 4557999999999999999999 8999999 699999999875432 234789999999 889999999
Q ss_pred HHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEe
Q 026341 84 KRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135 (240)
Q Consensus 84 ~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 135 (240)
+++|++||.|..+.+. +|+|||+|.+.++|++|+..|||..|+|+.|.|+||
T Consensus 112 ~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 112 KELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 9999999999999983 579999999999999999999999999999999997
No 10
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.93 E-value=1.1e-25 Score=176.06 Aligned_cols=128 Identities=23% Similarity=0.343 Sum_probs=104.2
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHH
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDI 83 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l 83 (240)
++.++|||||+|.++++|++||+. ++..| .|+.|.|.++........ .....+.++|||+|| |..+++++|
T Consensus 51 ~g~~~g~afV~f~~~~~A~~A~~~-~~~~~--~g~~l~v~~~~~~~~~~~-----~~~~~~~~~l~V~nL-p~~~t~~~l 121 (196)
T 1l3k_A 51 TKRSRGFGFVTYATVEEVDAAMNA-RPHKV--DGRVVEPKRAVSREDSQR-----PGAHLTVKKIFVGGI-KEDTEEHHL 121 (196)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHT-CSCEE--TTEECEEEECCC----------------CCSEEEEECC-TTTCCHHHH
T ss_pred CCCccceEEEEeCCHHHHHHHHhc-CCCEE--CCEEeeeecccCcccccc-----cccCCCcceEEEeCC-CCCCCHHHH
Confidence 677899999999999999999985 88888 699999999986543321 123445789999999 899999999
Q ss_pred HHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCCCC
Q 026341 84 KRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSE 141 (240)
Q Consensus 84 ~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 141 (240)
+++|++||.|..|.|. +|||||+|.+.++|++||.. ++..|+|+.|.|.++.++...
T Consensus 122 ~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp HHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred HHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 9999999999999884 57999999999999999986 899999999999999887654
No 11
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.93 E-value=3.4e-25 Score=178.12 Aligned_cols=128 Identities=21% Similarity=0.278 Sum_probs=109.4
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCC------------------------CCCCCCCC
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDG------------------------SKSMANQR 63 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~------------------------~~~~~~~~ 63 (240)
+|||||+|.++++|++|++.|||..| .|+.|.|+++.......... ........
T Consensus 72 ~g~afV~F~~~~~A~~Ai~~l~g~~~--~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (229)
T 2adc_A 72 KENALVQMADGNQAQLAMSHLNGHKL--HGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFP 149 (229)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCBC--SSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCC
Confidence 79999999999999999999999999 69999999998542111000 00012245
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCC-CeEEEEE---eCCeEEEEecCHHHHHHHHHhcCCCccc-CcEEEEEEeecC
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLV-DRVISVEYALKD 138 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G-~i~~~~~---~kg~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a~~~ 138 (240)
+.++|||+|| |..+++++|+++|.+|| .|..|.+ .+|+|||+|.+.++|++|+..|||..|. |+.|.|.|++++
T Consensus 150 ~~~~l~V~nl-p~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 150 PSATLHLSNI-PPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp SCSEEEEECC-CTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CCCEEEEeCC-CccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 6799999999 88999999999999999 9999999 4799999999999999999999999999 999999999764
No 12
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.93 E-value=1.1e-25 Score=169.51 Aligned_cols=133 Identities=18% Similarity=0.193 Sum_probs=113.0
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhh-CCCcccCCCceEEEEeccCCCCCC-----CCCCCCCCCCCCCCEEEEeccCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGL-DNIPFGYDRRRLSVEWARGERGRH-----RDGSKSMANQRPTKTLFVINFDPI 76 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l-~g~~~~~~g~~l~v~~a~~~~~~~-----~~~~~~~~~~~~~~~l~v~nl~~~ 76 (240)
+....+|+++|+|.+.++|++|++.| ||..| +| +|.|.++....... ...........+.++|||+|| |.
T Consensus 8 ~g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~--~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl-~~ 83 (150)
T 2i2y_A 8 NGKTLKGETTTEAVDAATAEKVFKQYANDNGV--DG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNL-GN 83 (150)
T ss_dssp CCSSSCEEEEEECSSHHHHTTTHHHHHHHHTC--CC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESC-CS
T ss_pred ccccccccceeeecCHHHHHHHHHHHhcCCCC--CC-ceecccccCccccccccccccccccccCCCCCCEEEEeCC-CC
Confidence 34566999999999999999999999 99999 68 99999887532111 111122335567899999999 88
Q ss_pred CCCHHHHHHhhccCCCeEEEEEe---CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCC
Q 026341 77 RTRERDIKRHFEPYGNVLHVRIR---RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 139 (240)
Q Consensus 77 ~~~~~~l~~~f~~~G~i~~~~~~---kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 139 (240)
.+++++|+++|.+||.|..|.|+ +|||||+|.+.++|+.|+..|||..|.|+.|.|+|+.++.
T Consensus 84 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 84 NGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 99999999999999999999995 7999999999999999999999999999999999998753
No 13
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.93 E-value=3.5e-25 Score=173.89 Aligned_cols=128 Identities=21% Similarity=0.282 Sum_probs=109.5
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCC------------------------CCCCCCCCC
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRD------------------------GSKSMANQR 63 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~------------------------~~~~~~~~~ 63 (240)
+|||||+|.++++|++|+..|||..| .|++|.|.++......... ........+
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 118 (198)
T 1qm9_A 41 KENALVQMADGNQAQLAMSHLNGHKL--HGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFP 118 (198)
T ss_dssp SSCCEEECTTTHHHHHHHHHHTTCCC--SSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCee--cCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCC
Confidence 79999999999999999999999999 6999999999854311100 000112245
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCC-CeEEEEE---eCCeEEEEecCHHHHHHHHHhcCCCccc-CcEEEEEEeecC
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLV-DRVISVEYALKD 138 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G-~i~~~~~---~kg~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a~~~ 138 (240)
+..+|||+|| |..+++++|+++|.+|| .|..|.+ .+|+|||+|.+.++|++|+..|||..|. |+.|.|.|++++
T Consensus 119 ~~~~l~v~nl-~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 119 PSATLHLSNI-PPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp CCCEEEECCC-CTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CccEEEEeCC-CCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 6899999999 88999999999999999 9999999 4699999999999999999999999999 999999999764
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.92 E-value=4.2e-25 Score=174.58 Aligned_cols=126 Identities=17% Similarity=0.227 Sum_probs=104.4
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCC------CC--------------C------CCC
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRD------GS--------------K------SMA 60 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~------~~--------------~------~~~ 60 (240)
.+|||||+|.++++|++||+.|||..| .|++|.|.++......+.. +. . ...
T Consensus 41 ~~g~afV~f~~~~~A~~Ai~~lng~~~--~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 118 (205)
T 3tyt_A 41 KPGAAMVEMADGYAVDRAITHLNNNFM--FGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNR 118 (205)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEE--CCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccc
Confidence 489999999999999999999999999 6999999999754321100 00 0 001
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCe--EEEEEe------CCeEEEEecCHHHHHHHHHhcCCCcccCc----
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNV--LHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDR---- 128 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i--~~~~~~------kg~afV~f~~~~~a~~A~~~l~g~~~~g~---- 128 (240)
..+|+.+|||+|| |..+++++|+++|++||.| ..+.+. +|+|||+|.+.++|.+||..|||..|.|.
T Consensus 119 ~~~p~~~l~v~NL-p~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~ 197 (205)
T 3tyt_A 119 IQHPSNVLHFFNA-PLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPY 197 (205)
T ss_dssp CCCCCSEEEEEEE-CTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSS
T ss_pred cCCCcceEEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCc
Confidence 2356789999999 8999999999999999998 788874 37999999999999999999999999885
Q ss_pred EEEEEEe
Q 026341 129 VISVEYA 135 (240)
Q Consensus 129 ~l~v~~a 135 (240)
++.|.||
T Consensus 198 p~~vk~~ 204 (205)
T 3tyt_A 198 PYTLKLC 204 (205)
T ss_dssp CEECEEE
T ss_pred ceEEEec
Confidence 6777776
No 15
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.92 E-value=3.5e-25 Score=168.05 Aligned_cols=135 Identities=24% Similarity=0.235 Sum_probs=102.8
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC--CCCCCCCCCCCCCCCCEEEEeccCCCCCCH
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG--RHRDGSKSMANQRPTKTLFVINFDPIRTRE 80 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~--~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~ 80 (240)
+...++|||||+|.++++|++|+..+++.... ++ .+.+........ .............+..+|||+|| |..+++
T Consensus 8 n~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl-~~~~~~ 84 (158)
T 2kn4_A 8 NGKTLKGETTTEAVDAATAEKVFKQYANDNGV-DG-EWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNL-TYRTSP 84 (158)
T ss_dssp ECSSCEEEEEEECSSHHHHHHHHHHHHHHHTC-CC-EEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESC-CTTCCH
T ss_pred cCccccchhHHHHHHHHhHHHHHHhhcccCCC-CC-cccccCccccccccccccccccccCCCCCCEEEEeCC-CCCCCH
Confidence 34467999999999999999999988864432 23 222221111000 00001111223456789999999 899999
Q ss_pred HHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCCC
Q 026341 81 RDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 140 (240)
Q Consensus 81 ~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 140 (240)
++|+++|++||.|..|.|. +|||||+|.+.++|+.||..|||..|.|+.|.|.++.+...
T Consensus 85 ~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 85 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp HHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred HHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 9999999999999999984 57999999999999999999999999999999999987643
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.92 E-value=1.6e-24 Score=179.39 Aligned_cols=126 Identities=20% Similarity=0.280 Sum_probs=112.9
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCC-CCHHH
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIR-TRERD 82 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~-~~~~~ 82 (240)
++.++|||||+|.+.++|++|+..|||..| +|++|.|.|+....... ...+..+|||+|| |.. +++++
T Consensus 133 ~g~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~i~v~~a~~~~~~~--------~~~~~~~l~v~nl-p~~~~~~~~ 201 (284)
T 3smz_A 133 TGQSKGYGFAEYMKKDSAARAKSDLLGKPL--GPRTLYVHWTDAGQLTP--------ALLHSRCLCVDRL-PPGFNDVDA 201 (284)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECCGGGCCT--------TTTSCSEEEEECC-CTTCCCHHH
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEEECCCCCCCc--------ccCCccEEEEecC-CcccCCHHH
Confidence 677899999999999999999999999999 69999999998755332 3356789999999 888 49999
Q ss_pred HHHhhccCCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCCC
Q 026341 83 IKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 140 (240)
Q Consensus 83 l~~~f~~~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 140 (240)
|+++|+.||.|..+.|. +|+|||+|.+.++|.+|+..|||..|.|+.|.|.|+.+...
T Consensus 202 l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 202 LCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp HHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred HHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 99999999999999884 57999999999999999999999999999999999987653
No 17
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.92 E-value=1.8e-24 Score=166.10 Aligned_cols=120 Identities=25% Similarity=0.377 Sum_probs=104.1
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCcccC-CCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHHH
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGY-DRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIK 84 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~-~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~ 84 (240)
.++|||||+|.++++|++|++.||+..+.. .+..|.|.++..... ...+..+|||+|| |..+++++|+
T Consensus 45 ~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~v~nl-~~~~t~~~l~ 113 (175)
T 3nmr_A 45 QSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKN----------NAVEDRKLFIGMI-SKKCTENDIR 113 (175)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCC----------SCGGGSEEEEESC-CTTCCHHHHH
T ss_pred CcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcccccccc----------ccCCCCeEEEcCC-CCcCCHHHHH
Confidence 679999999999999999999999987731 267888888775443 2235789999999 8999999999
Q ss_pred HhhccCCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCccc---CcEEEEEEee
Q 026341 85 RHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLV---DRVISVEYAL 136 (240)
Q Consensus 85 ~~f~~~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v~~a~ 136 (240)
++|++||.|..+.+. +|||||+|.+.++|++|++.|||..+. +++|.|.||.
T Consensus 114 ~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 114 VMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 999999999999984 579999999999999999999998776 4999999973
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.91 E-value=3.2e-24 Score=178.25 Aligned_cols=126 Identities=23% Similarity=0.339 Sum_probs=107.1
Q ss_pred CCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCC-CCHHHH
Q 026341 5 LHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIR-TRERDI 83 (240)
Q Consensus 5 ~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~-~~~~~l 83 (240)
+.++|||||+|.+.++|++|+..|||..| +|+.|.|.++.+....... .....+..+|||+|| |.. +++++|
T Consensus 156 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a~~~~~~~~~----~~~~~~~~~l~v~nl-p~~~~t~~~l 228 (292)
T 2ghp_A 156 NTSRRFAYIDVTSKEDARYCVEKLNGLKI--EGYTLVTKVSNPLEKSKRT----DSATLEGREIMIRNL-STELLDENLL 228 (292)
T ss_dssp ---CCEEEEECSSHHHHHHHHHHHTTCEE--TTEECEEEECCCC-------------CCTTTEEEEEEE-CTTTCCHHHH
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEEECCCCcccccc----cccCCCCceEEEECC-CcccCCHHHH
Confidence 56799999999999999999999999999 6999999999876543221 124456899999999 889 999999
Q ss_pred HHhhccCCCeEEEEEe---------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecC
Q 026341 84 KRHFEPYGNVLHVRIR---------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138 (240)
Q Consensus 84 ~~~f~~~G~i~~~~~~---------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 138 (240)
+++|.+||.|..|.|. +|||||+|.+.++|++|+ .|||..|.|+.|.|.|+.++
T Consensus 229 ~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 229 RESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred HHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 9999999999999884 479999999999999999 99999999999999999865
No 19
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.91 E-value=4.8e-25 Score=168.23 Aligned_cols=119 Identities=18% Similarity=0.367 Sum_probs=104.9
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHH
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERD 82 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~ 82 (240)
.++.++|||||+|.++++|++|+.. +..| +|+.|.|.++.+... ..+..+|||+|| |..+++++
T Consensus 40 ~~g~~~g~afV~f~~~~~a~~A~~~--~~~~--~g~~i~v~~~~~~~~-----------~~~~~~l~V~nl-p~~~t~~~ 103 (167)
T 2cjk_A 40 ATGRSRGFGFLSFEKPSSVDEVVKT--QHIL--DGKVIDPKRAIPRDE-----------QDKTGKIFVGGI-GPDVRPKE 103 (167)
T ss_dssp TTSSCCSCEEEEESSTHHHHHHHHS--CCEE--TTEECCCEECCCHHH-----------HHHCEEEEEEEE-CTTCCHHH
T ss_pred CCCCccceEEEEEccHHHHHHHHhc--cccc--CCeEcccccccchhh-----------ccCCCeEEECCC-CCCCCHHH
Confidence 3678899999999999999999984 4566 699999998875432 224679999999 89999999
Q ss_pred HHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecC
Q 026341 83 IKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138 (240)
Q Consensus 83 l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 138 (240)
|+++|++||.|..+.+. +|||||+|.+.++|++|++ +++..|+|+.|.|.||.++
T Consensus 104 l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 104 FEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 99999999999999984 4799999999999999998 8999999999999999864
No 20
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.90 E-value=3.6e-23 Score=180.55 Aligned_cols=79 Identities=27% Similarity=0.473 Sum_probs=72.7
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
...+.++|||+|| ++.+|+++|.++|.+||.|+.|.|+ +|||||+|.+.++|++||..|||..|+|+.|.|
T Consensus 98 ~~~~~~~lfV~nL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V 176 (437)
T 3pgw_S 98 QGDAFKTLFVARV-NYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 176 (437)
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEE
Confidence 3456789999999 8999999999999999999999884 689999999999999999999999999999999
Q ss_pred EEeecCCC
Q 026341 133 EYALKDDS 140 (240)
Q Consensus 133 ~~a~~~~~ 140 (240)
+|+.+...
T Consensus 177 ~~a~~~~~ 184 (437)
T 3pgw_S 177 DVERGRTV 184 (437)
T ss_pred EEeCCCCC
Confidence 99987554
No 21
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.89 E-value=7.2e-23 Score=169.38 Aligned_cols=115 Identities=21% Similarity=0.350 Sum_probs=105.9
Q ss_pred CCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHHH
Q 026341 5 LHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIK 84 (240)
Q Consensus 5 ~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~ 84 (240)
++++|||||+|.++++|++|++.|||..| .|++|.|+++. +..+|||+|| |..+++++|.
T Consensus 54 ~~~~g~afV~f~~~~~A~~A~~~l~~~~~--~g~~i~v~~~~-----------------~~~~l~v~nl-p~~~t~~~l~ 113 (284)
T 3smz_A 54 DKYKGTAFVTLLNGEQAEAAINAFHQSRL--RERELSVQLQP-----------------TDALLCVANL-PPSLTQQQFE 113 (284)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECC-----------------CSCEEEEESC-CTTCCHHHHH
T ss_pred ecCCCEEEEEeCCHHHHHHHHHHcCCCee--CCeEEEEEecC-----------------CCCEEEEcCC-CCcCCHHHHH
Confidence 56799999999999999999999999998 69999999854 2579999999 8999999999
Q ss_pred HhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCC
Q 026341 85 RHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 139 (240)
Q Consensus 85 ~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 139 (240)
++|.+||.|..+.+. +|||||+|.+.++|..|+..|||..|.|+.|.|.++.+..
T Consensus 114 ~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 114 ELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp HHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGG
T ss_pred HHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 999999999999873 5799999999999999999999999999999999997654
No 22
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.89 E-value=6.7e-23 Score=167.82 Aligned_cols=115 Identities=26% Similarity=0.302 Sum_probs=103.4
Q ss_pred CCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHHH
Q 026341 5 LHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIK 84 (240)
Q Consensus 5 ~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~ 84 (240)
++.+|||||+|.+.++|++|+..|||..| .|+.|.|.++.+ ..+|||+|| |..+++++|+
T Consensus 55 ~~~kg~afV~f~~~~~A~~A~~~l~g~~i--~g~~l~v~~a~~-----------------~~~l~v~nl-~~~~t~~~l~ 114 (261)
T 3sde_A 55 NRDRGFGFIRLESRTLAEIAKAELDGTIL--KSRPLRIRFATH-----------------GAALTVKNL-SPVVSNELLE 114 (261)
T ss_dssp ETTTTEEEEECSSHHHHHHHHHHHTTCEE--TTEECEEEECCC-----------------SSEEEEESC-CTTCCHHHHH
T ss_pred eCCCcEEEEEECCHHHHHHHHHHcCCcEE--CCceeEeeeccc-----------------CCcccccCC-CCCCCHHHHH
Confidence 34689999999999999999999999999 699999999873 578999999 8899999999
Q ss_pred HhhccCCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCC-ccc---CcEEEEEEeecCC
Q 026341 85 RHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRS-KLV---DRVISVEYALKDD 139 (240)
Q Consensus 85 ~~f~~~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~-~~~---g~~l~v~~a~~~~ 139 (240)
++|..||.|..|.|. +|||||+|.+.++|.+|+..||+. .+. +++|.|.++....
T Consensus 115 ~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 115 QAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred HHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 999999999999984 689999999999999999999554 443 8999999998654
No 23
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.88 E-value=3.6e-22 Score=165.78 Aligned_cols=111 Identities=21% Similarity=0.300 Sum_probs=102.5
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHHHHh
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRH 86 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~ 86 (240)
++|||||+|.++++|++|++ |||..| +|+.|.|.++. .++|||+|| |..+++++|.++
T Consensus 80 ~~g~afV~f~~~~~A~~A~~-~~~~~~--~g~~i~v~~~~------------------~~~l~v~nl-p~~~t~~~l~~~ 137 (292)
T 2ghp_A 80 NFRFARIEFARYDGALAAIT-KTHKVV--GQNEIIVSHLT------------------ECTLWMTNF-PPSYTQRNIRDL 137 (292)
T ss_dssp SSEEEEEEESSHHHHHHHHT-TTTCEE--TTEECEEEECC------------------SCEEEEECC-CTTCCHHHHHHH
T ss_pred CcEEEEEEECCHHHHHHHHH-hCCcEe--CCcEEEEEECC------------------CCEEEEECC-CCCCCHHHHHHH
Confidence 48999999999999999995 999999 69999999863 689999999 899999999999
Q ss_pred hccCC-CeEEEEE-------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCC
Q 026341 87 FEPYG-NVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 139 (240)
Q Consensus 87 f~~~G-~i~~~~~-------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 139 (240)
|.+|| .|..|.+ .+|||||+|.+.++|++|+..|||..|.|+.|.|.++.+..
T Consensus 138 f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 138 LQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp HHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-
T ss_pred HHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCc
Confidence 99999 9999998 36899999999999999999999999999999999988654
No 24
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.85 E-value=3.8e-21 Score=146.82 Aligned_cols=127 Identities=20% Similarity=0.317 Sum_probs=72.5
Q ss_pred EEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCC--------C-CCCCCCCCCCCCEEEEeccCCCCCCHHHH
Q 026341 13 VYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHR--------D-GSKSMANQRPTKTLFVINFDPIRTRERDI 83 (240)
Q Consensus 13 V~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~--------~-~~~~~~~~~~~~~l~v~nl~~~~~~~~~l 83 (240)
.+|++.++|+.|+..|++....-.|+.+.+.++........ . ....+....+.++|||+|| |..+++++|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nL-p~~~t~~~L 89 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSI-HEEAQEDEI 89 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESC-CTTCCHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCC-CCCCCHHHH
Confidence 78999999999999999987743466666666433221110 0 1112334566789999999 889999999
Q ss_pred HHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCCC
Q 026341 84 KRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 140 (240)
Q Consensus 84 ~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 140 (240)
+++|.+||.|..|.|. +|||||+|.+.++|++||..|||..|.|+.|.|.|+.....
T Consensus 90 ~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 90 QEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred HHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 9999999999999984 58999999999999999999999999999999999987653
No 25
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.83 E-value=6.1e-20 Score=129.15 Aligned_cols=82 Identities=26% Similarity=0.477 Sum_probs=75.7
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCCC
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 140 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 140 (240)
...+.++|||+|| |..+++++|+++|.+||.|..|.|.++||||+|.+.++|++||+.||+..|.|+.|.|+|+.+...
T Consensus 7 ~~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 7 GMAKVKVLFVRNL-ANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCCCCCEEEECC-CTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 4456789999999 889999999999999999999999999999999999999999999999999999999999987765
Q ss_pred CCC
Q 026341 141 ERD 143 (240)
Q Consensus 141 ~~~ 143 (240)
...
T Consensus 86 ~~~ 88 (103)
T 2dgu_A 86 KRK 88 (103)
T ss_dssp CCC
T ss_pred cch
Confidence 443
No 26
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.83 E-value=4.2e-21 Score=141.74 Aligned_cols=117 Identities=25% Similarity=0.294 Sum_probs=73.9
Q ss_pred ceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHHHHhhc
Q 026341 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 88 (240)
Q Consensus 9 G~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~f~ 88 (240)
-++|++|++...|..||..|+|.... |.. .+.+..+ +....+.++|||+|| |..+++++|+++|+
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~--g~~-~~~~~~~-----------~~~~~~~~~l~V~nL-p~~~te~~L~~~F~ 69 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQM--GRG-SMSYGRP-----------PPDVEGMTSLKVDNL-TYRTSPDTLRRVFE 69 (135)
T ss_dssp ---------------------------------CCSCCS-----------CSSGGGCCCEEEECC-CSSCHHHHHHHHHG
T ss_pred ccccccccCCCchhhhhhhccCCCCC--CCC-CCCcCCC-----------CCCCCCCCEEEEeCC-CCCCCHHHHHHHHH
Confidence 36788888888899999989887652 332 2222222 123445789999999 88999999999999
Q ss_pred cCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCCC
Q 026341 89 PYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 140 (240)
Q Consensus 89 ~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 140 (240)
+||.|..|.|. +|||||+|.+.++|++||..|||..|.|+.|.|+|+++...
T Consensus 70 ~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 70 KYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp GGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred hcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999984 57999999999999999999999999999999999987543
No 27
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.2e-19 Score=126.56 Aligned_cols=76 Identities=24% Similarity=0.324 Sum_probs=71.6
Q ss_pred CCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEeC-CeEEEEecCHHHHHHHHHhcCCCcccC-----cEEEEEEe
Q 026341 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR-NFAFVQFETQEEATKALESTDRSKLVD-----RVISVEYA 135 (240)
Q Consensus 62 ~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~k-g~afV~f~~~~~a~~A~~~l~g~~~~g-----~~l~v~~a 135 (240)
....++|||+|| |+.+++++|+++|.+||+|..|.|.. +||||+|.+.++|++||+.||+..|.| +.|.|+++
T Consensus 12 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 12 RRSENRVVVSGL-PPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp CSCCCEEEEESC-CSSCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 345789999999 89999999999999999999999987 999999999999999999999999999 99999999
Q ss_pred ecC
Q 026341 136 LKD 138 (240)
Q Consensus 136 ~~~ 138 (240)
.+.
T Consensus 91 ~~~ 93 (108)
T 1x4c_A 91 GPR 93 (108)
T ss_dssp SCC
T ss_pred CCC
Confidence 874
No 28
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=9.4e-20 Score=127.26 Aligned_cols=74 Identities=22% Similarity=0.412 Sum_probs=69.2
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEE
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 134 (240)
..+++|||+|| |..+++++|+++|++||+|..|.|. +|||||+|.+.++|++|++.|||..|.|++|.|+|
T Consensus 17 ~~gt~lfV~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 17 FQGTNLIVNYL-PQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34788999999 8999999999999999999999884 57999999999999999999999999999999999
Q ss_pred eec
Q 026341 135 ALK 137 (240)
Q Consensus 135 a~~ 137 (240)
|++
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 975
No 29
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.8e-19 Score=122.57 Aligned_cols=78 Identities=31% Similarity=0.485 Sum_probs=73.8
Q ss_pred CCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCCC
Q 026341 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 140 (240)
Q Consensus 62 ~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 140 (240)
..+.++|||+|| |..+++++|+++|++||.|..|.+.++||||+|.+.++|++|+..||+..|.|+.|.|+++.+...
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 5 SSGMVKLFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SSCCEEEEEESC-CSSCCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCCeEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 456899999999 899999999999999999999999999999999999999999999999999999999999987654
No 30
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.81 E-value=1.4e-19 Score=128.79 Aligned_cols=95 Identities=17% Similarity=0.319 Sum_probs=80.4
Q ss_pred CCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCC-CCHHHHHHhhccCCCeEEEEEeCCeEEEEecCHHHHH
Q 026341 36 DRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIR-TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEAT 114 (240)
Q Consensus 36 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~-~~~~~l~~~f~~~G~i~~~~~~kg~afV~f~~~~~a~ 114 (240)
.|.+|.|..+...... ....+.++|||+|| |.. +++++|+++|.+||.|..|.|.++||||+|.+.++|+
T Consensus 6 ~g~~~~~~~s~~~~~~--------~~~~~~~~l~V~nl-~~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKN--------DPKSINSRVFIGNL-NTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHAR 76 (110)
T ss_dssp CSCCCCCCCCCSCCSC--------CCTTCSSEEEECSC-CCSSCCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHH
T ss_pred CCcccccccCCCCCCC--------CCCCCCcEEEEeCC-CcccCCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHH
Confidence 3556666655543222 13345689999999 888 9999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcccCcEEEEEEeecCC
Q 026341 115 KALESTDRSKLVDRVISVEYALKDD 139 (240)
Q Consensus 115 ~A~~~l~g~~~~g~~l~v~~a~~~~ 139 (240)
+||+.||+..|+|+.|.|+++....
T Consensus 77 ~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 77 AAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp HHHHHHTTCEETTEECCEEESCCCC
T ss_pred HHHHHcCCCEECCeEEEEEECCCCC
Confidence 9999999999999999999998644
No 31
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.9e-19 Score=122.36 Aligned_cols=79 Identities=23% Similarity=0.452 Sum_probs=74.2
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCCC
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 140 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 140 (240)
...+.++|||+|| |..+++++|+++|++||.|..|.+.++||||+|.+.++|++|+..||+..|.|+.|.|+++.+...
T Consensus 6 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 6 SGKASTKLHVGNI-SPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp CCCSSEEEEEESC-CSSCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence 4456899999999 899999999999999999999999999999999999999999999999999999999999987654
No 32
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.1e-19 Score=122.36 Aligned_cols=78 Identities=23% Similarity=0.418 Sum_probs=73.5
Q ss_pred CCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCCC
Q 026341 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 140 (240)
Q Consensus 62 ~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 140 (240)
..+.++|||+|| |..+++++|+++|++||.|..|.+.++||||+|.+.++|++|+..|||..|.|+.|.|+++.+...
T Consensus 6 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 6 SGNTWKIFVGNV-SAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp SCCSCCEEEESC-CTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 456789999999 889999999999999999999999999999999999999999999999999999999999987643
No 33
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=2.1e-19 Score=124.79 Aligned_cols=79 Identities=25% Similarity=0.578 Sum_probs=72.7
Q ss_pred CCCCCCEEEEeccCCC-CCCHHHHHHhhccCCCeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCC
Q 026341 61 NQRPTKTLFVINFDPI-RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 139 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~-~~~~~~l~~~f~~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 139 (240)
...+.++|||+|| |. .+++++|+++|.+||.|..|.|++|||||+|.+.++|+.|+..|||..|.|+.|.|+++....
T Consensus 6 ~~~~~~~l~V~nl-p~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 6 NIPPKSRLFIGNL-PLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp ---CCEEEEEESS-TTSCCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred cCCCCCEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 4567899999999 87 999999999999999999999999999999999999999999999999999999999998765
Q ss_pred C
Q 026341 140 S 140 (240)
Q Consensus 140 ~ 140 (240)
.
T Consensus 85 ~ 85 (96)
T 2kvi_A 85 R 85 (96)
T ss_dssp C
T ss_pred C
Confidence 4
No 34
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.80 E-value=3.2e-19 Score=123.75 Aligned_cols=78 Identities=15% Similarity=0.240 Sum_probs=72.1
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--CCeEEEEecCHHHHHHHHHhcCCCc--ccCcEEEEEEee
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSK--LVDRVISVEYAL 136 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--kg~afV~f~~~~~a~~A~~~l~g~~--~~g~~l~v~~a~ 136 (240)
..+|+.+|||+|| |..+++++|.++|++||.|..|.+. +|+|||+|++.++|++|++.|++.. |.|++|.|+|++
T Consensus 17 ~~~ps~~l~V~NL-p~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 17 KTPASPVVHIRGL-IDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCCCSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred cCCCCcEEEEeCC-CCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 5668999999999 8999999999999999999999986 7999999999999999999999876 789999999998
Q ss_pred cCC
Q 026341 137 KDD 139 (240)
Q Consensus 137 ~~~ 139 (240)
.+.
T Consensus 96 ~k~ 98 (100)
T 3r27_A 96 SQK 98 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 653
No 35
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.80 E-value=2.8e-19 Score=130.29 Aligned_cols=80 Identities=25% Similarity=0.471 Sum_probs=73.7
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
...+.++|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 18 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 18 RSVEGWILFVTGV-HEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCSSSEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4556889999999 8999999999999999999999984 789999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 026341 133 EYALKDDSE 141 (240)
Q Consensus 133 ~~a~~~~~~ 141 (240)
+|+......
T Consensus 97 ~~a~~~~~~ 105 (126)
T 3ex7_B 97 DWCFVRGPP 105 (126)
T ss_dssp EESEESSSC
T ss_pred EEecCCCCC
Confidence 999876543
No 36
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1e-18 Score=121.88 Aligned_cols=78 Identities=31% Similarity=0.448 Sum_probs=73.7
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccC--CCeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecC
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~--G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 138 (240)
...+.++|||+|| |..+++++|+++|.+| |.|..|.++++||||+|.+.++|++||..|||..|.|+.|.|+++++.
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 11 TMSSVKILYVRNL-MLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp CSSCCCEEEEESC-CTTCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred ccCCcCEEEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 4566899999999 8899999999999999 999999999999999999999999999999999999999999999875
Q ss_pred C
Q 026341 139 D 139 (240)
Q Consensus 139 ~ 139 (240)
.
T Consensus 90 ~ 90 (99)
T 2cpd_A 90 D 90 (99)
T ss_dssp C
T ss_pred C
Confidence 4
No 37
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.79 E-value=3.4e-19 Score=127.85 Aligned_cols=73 Identities=23% Similarity=0.312 Sum_probs=65.1
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEeC-CeEEEEecCHHHHHHHHHhcCCCcccCcE-----EEEEEeec
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR-NFAFVQFETQEEATKALESTDRSKLVDRV-----ISVEYALK 137 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~k-g~afV~f~~~~~a~~A~~~l~g~~~~g~~-----l~v~~a~~ 137 (240)
..++|||+|| |+.+++++|+++|.+||+|..|.|.. +||||+|++.++|++||+.|||.+|+|+. |.|..+.+
T Consensus 15 ~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 15 SENRVVVSGL-PPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp --CCEEEEEC-CSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred CCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence 4689999999 89999999999999999999999987 99999999999999999999999999988 55555443
No 38
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.79 E-value=1.5e-18 Score=124.70 Aligned_cols=78 Identities=28% Similarity=0.378 Sum_probs=72.0
Q ss_pred CCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEE
Q 026341 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134 (240)
Q Consensus 62 ~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 134 (240)
..+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++|++.|||..|.|+.|.|++
T Consensus 4 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGL-NRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECC-TTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 455789999999 8999999999999999999999995 48999999999999999999999999999999999
Q ss_pred eecCCC
Q 026341 135 ALKDDS 140 (240)
Q Consensus 135 a~~~~~ 140 (240)
+++...
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 987643
No 39
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.78 E-value=1.1e-18 Score=121.46 Aligned_cols=77 Identities=23% Similarity=0.555 Sum_probs=72.5
Q ss_pred CCCCCCEEEEeccCCC-CCCHHHHHHhhccCCCeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecC
Q 026341 61 NQRPTKTLFVINFDPI-RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~-~~~~~~l~~~f~~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 138 (240)
..++.++|||+|| |. .+++++|+++|.+||.|..|.+++|||||+|.+.++|++|+..|||..|+|+.|.|++++..
T Consensus 18 ~~~~~~~l~V~nL-p~~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 18 GSHMKSRLFIGNL-PLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp -CCTTCEEEEESC-CSSCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCCCCCEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 5567899999999 87 99999999999999999999999999999999999999999999999999999999998764
No 40
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=9.4e-19 Score=122.40 Aligned_cols=78 Identities=18% Similarity=0.316 Sum_probs=70.7
Q ss_pred CCCCCCEEEEeccCCC-CCCHHHHHHhhccCCCeEEEEEe--CCeEEEEecCHHHHHHHHHhcCCC--cccCcEEEEEEe
Q 026341 61 NQRPTKTLFVINFDPI-RTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRS--KLVDRVISVEYA 135 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~-~~~~~~l~~~f~~~G~i~~~~~~--kg~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a 135 (240)
...+.++|||+|| |+ .+++++|+++|++||.|..|.|. ++||||+|++.++|++||+.||+. .|.|++|.|+||
T Consensus 11 ~~~p~~~l~V~nL-p~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 11 RVETRRVVHIMDF-QRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp CCCCCCEEEEESC-CCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred CCCCCCEEEEeCC-CCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 3457899999999 88 99999999999999999999996 489999999999999999999864 599999999999
Q ss_pred ecCC
Q 026341 136 LKDD 139 (240)
Q Consensus 136 ~~~~ 139 (240)
....
T Consensus 90 ~~~~ 93 (102)
T 1x4d_A 90 QKYK 93 (102)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 8644
No 41
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.3e-18 Score=121.08 Aligned_cols=81 Identities=16% Similarity=0.232 Sum_probs=72.7
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--CCeEEEEecCHHHHHHHHHhcCCC--cccCcEEEEEEee
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRS--KLVDRVISVEYAL 136 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--kg~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~ 136 (240)
...|.++|||+|| |+.+++++|+++|++||.|..|.|. +|||||+|++.++|++|++.|++. .|.|++|.|+|+.
T Consensus 11 ~~~p~~~l~V~nL-p~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 11 KVSVSPVVHVRGL-CESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCCCSEEEEESC-CSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 4567899999999 8999999999999999999999986 689999999999999999988654 5999999999998
Q ss_pred cCCCCC
Q 026341 137 KDDSER 142 (240)
Q Consensus 137 ~~~~~~ 142 (240)
.+....
T Consensus 90 ~~~~~~ 95 (104)
T 1wex_A 90 SKRITR 95 (104)
T ss_dssp SSSCCC
T ss_pred CccccC
Confidence 765443
No 42
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.5e-18 Score=122.06 Aligned_cols=79 Identities=25% Similarity=0.426 Sum_probs=72.7
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe-----CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEe
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-----RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~-----kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 135 (240)
...+.++|||+|| |..+++++|+++|.+||.|..|.|. ++||||+|.+.++|++||+.||+..|+|+.|.|+|+
T Consensus 18 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 18 AGNNDCRIYVGNL-PPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCSSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 4556799999999 8899999999999999999999984 579999999999999999999999999999999999
Q ss_pred ecCCC
Q 026341 136 LKDDS 140 (240)
Q Consensus 136 ~~~~~ 140 (240)
++...
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87543
No 43
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.3e-19 Score=124.32 Aligned_cols=80 Identities=19% Similarity=0.374 Sum_probs=72.3
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--CCeEEEEecCHHHHHHHHHhcCC--CcccCcEEEEEEee
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDR--SKLVDRVISVEYAL 136 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--kg~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~v~~a~ 136 (240)
...+.++|||+|| |+.+++++|+++|++||+|..|.|. +|||||+|++.++|+.|++.|++ ..|.|++|.|+|++
T Consensus 12 ~~~~~~~LfV~nL-p~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 12 SGVPSRVIHIRKL-PIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp CCCCCCEEEECSC-CTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 4456899999999 8999999999999999999999997 69999999999999999998864 78999999999998
Q ss_pred cCCCC
Q 026341 137 KDDSE 141 (240)
Q Consensus 137 ~~~~~ 141 (240)
.+...
T Consensus 91 ~~~~~ 95 (105)
T 1sjq_A 91 HKELK 95 (105)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 76543
No 44
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.7e-18 Score=119.36 Aligned_cols=80 Identities=31% Similarity=0.514 Sum_probs=74.0
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 134 (240)
...+.++|||+|| |..+++++|+++|.+||.|..|.|. ++||||+|.+.++|++||..||+..|+|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 11 SKSTPKRLHVSNI-PFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CSCCCCEEEEESC-CTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4556899999999 8999999999999999999999996 78999999999999999999999999999999999
Q ss_pred eecCCCC
Q 026341 135 ALKDDSE 141 (240)
Q Consensus 135 a~~~~~~ 141 (240)
+.+....
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9876543
No 45
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3.4e-18 Score=118.28 Aligned_cols=77 Identities=22% Similarity=0.395 Sum_probs=71.5
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEE
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 134 (240)
.+.++|||+|| |..+++++|+++|++||.|..|.+. +|||||+|.+.++|++|++.|||..|.|+.|.|++
T Consensus 3 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSL-HFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 46789999999 8899999999999999999999984 57999999999999999999999999999999999
Q ss_pred eecCCC
Q 026341 135 ALKDDS 140 (240)
Q Consensus 135 a~~~~~ 140 (240)
+.++..
T Consensus 82 a~~~~~ 87 (95)
T 2dnz_A 82 VTERLD 87 (95)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 987653
No 46
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.9e-18 Score=120.49 Aligned_cols=79 Identities=23% Similarity=0.468 Sum_probs=73.2
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 134 (240)
...+.++|||+|| |..+++++|+++|.+||.|..|.|. ++||||+|.+.++|++||..|||..|.|+.|.|.|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 11 TRYQVVNLYVKNL-DDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCSSCCCEEEECC-CTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4456889999999 8899999999999999999999986 68999999999999999999999999999999999
Q ss_pred eecCCC
Q 026341 135 ALKDDS 140 (240)
Q Consensus 135 a~~~~~ 140 (240)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2d9p_A 90 AQRKEE 95 (103)
T ss_dssp CSSCCC
T ss_pred eccccc
Confidence 987654
No 47
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.4e-18 Score=120.07 Aligned_cols=80 Identities=23% Similarity=0.380 Sum_probs=73.7
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 134 (240)
...+.++|||+|| |..+++++|+++|.+||.|..|.|. ++||||+|.+.++|++||..||+..|.|+.|.|+|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 11 DDGQPRTLYVGNL-SRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CSCCCCEEEEESC-CTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCC-CccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 4566899999999 8899999999999999999999995 48999999999999999999999999999999999
Q ss_pred eecCCCC
Q 026341 135 ALKDDSE 141 (240)
Q Consensus 135 a~~~~~~ 141 (240)
+.+....
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9886543
No 48
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.77 E-value=7.9e-19 Score=117.83 Aligned_cols=73 Identities=18% Similarity=0.222 Sum_probs=68.8
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE--eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEee
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~--~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 136 (240)
....-|||+|| ++.+++++|+++|.+||+|..+.+ ++|||||+|.+.++|++|++.||+.++.|++|.|++|.
T Consensus 5 ~~~~wL~VgNL-~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKNL-TAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEECC-CTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeCC-CccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 44678999999 889999999999999999999988 58999999999999999999999999999999999984
No 49
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=123.63 Aligned_cols=76 Identities=22% Similarity=0.307 Sum_probs=70.5
Q ss_pred CCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEE
Q 026341 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 133 (240)
Q Consensus 62 ~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 133 (240)
.++.++|||+|| ++.+++++|+++|++||.|..|.|+ +|||||+|.+.++|++||+.|||..|+|+.|.|+
T Consensus 3 ~~p~~~lfV~nL-~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~ 81 (110)
T 3s8s_A 3 QIPLKEVTFARL-NDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQ 81 (110)
T ss_dssp CSCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEECC-CCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 356789999999 8999999999999999999999983 5899999999999999999999999999999999
Q ss_pred EeecC
Q 026341 134 YALKD 138 (240)
Q Consensus 134 ~a~~~ 138 (240)
++...
T Consensus 82 ~a~~~ 86 (110)
T 3s8s_A 82 LDIKG 86 (110)
T ss_dssp ECSTT
T ss_pred ECCCC
Confidence 98654
No 50
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.77 E-value=5.8e-19 Score=125.50 Aligned_cols=74 Identities=18% Similarity=0.184 Sum_probs=69.1
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCC-CeEEEEEe----CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecC
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRIR----RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G-~i~~~~~~----kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 138 (240)
..++|||+|| |+.+++++|+++|.+|| +|..+.|. +|||||+|.+.++|++||+.|||..|+|+.|.|+++...
T Consensus 27 ~~~~l~VgnL-p~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 27 KRYRITMKNL-PEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CCEEEEEECS-SCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCEEEEECC-CCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4689999999 99999999999999999 89999984 799999999999999999999999999999999998754
No 51
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-18 Score=119.87 Aligned_cols=77 Identities=25% Similarity=0.282 Sum_probs=71.9
Q ss_pred CCCCCEEEEeccCCCCCCHHHHH----HhhccCCCeEEEEEe-----CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 62 QRPTKTLFVINFDPIRTRERDIK----RHFEPYGNVLHVRIR-----RNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 62 ~~~~~~l~v~nl~~~~~~~~~l~----~~f~~~G~i~~~~~~-----kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
....++|||+|| |+.+++++|+ ++|++||.|..|.|+ ++||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 6 ~~~~~~l~V~nL-~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 6 SGNGADVQVSNI-DYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp CSSCEEEEEESC-CTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345789999999 8999999999 999999999999997 899999999999999999999999999999999
Q ss_pred EEeecCC
Q 026341 133 EYALKDD 139 (240)
Q Consensus 133 ~~a~~~~ 139 (240)
+++++..
T Consensus 85 ~~a~~~~ 91 (96)
T 2dgx_A 85 SLATGAS 91 (96)
T ss_dssp EECCCSS
T ss_pred EEcCCCC
Confidence 9997654
No 52
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.5e-18 Score=118.09 Aligned_cols=80 Identities=20% Similarity=0.370 Sum_probs=72.2
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--CCeEEEEecCHHHHHHHHHhc--CCCcccCcEEEEEEee
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALEST--DRSKLVDRVISVEYAL 136 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--kg~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~~a~ 136 (240)
..++.++|||+|| |+.+++++|+++|++||.|..|.|. +|||||+|++.++|++|++.| ++..|.|++|.|+|++
T Consensus 11 ~~~p~~~l~V~nL-p~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 11 DGAPSRVLHIRKL-PGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp CSSCCSEEEEESC-CTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 4567899999999 8999999999999999999999986 589999999999999999987 4678999999999998
Q ss_pred cCCCC
Q 026341 137 KDDSE 141 (240)
Q Consensus 137 ~~~~~ 141 (240)
.+...
T Consensus 90 ~~~~~ 94 (101)
T 2cq1_A 90 HKELK 94 (101)
T ss_dssp CSSCC
T ss_pred cccCc
Confidence 76544
No 53
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.7e-18 Score=123.14 Aligned_cols=81 Identities=19% Similarity=0.363 Sum_probs=73.3
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--CCeEEEEecCHHHHHHHHHhcC--CCcccCcEEEEEEee
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTD--RSKLVDRVISVEYAL 136 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--kg~afV~f~~~~~a~~A~~~l~--g~~~~g~~l~v~~a~ 136 (240)
..++.++|||+|| |+.+++++|+++|++||.|..|.|. +|||||+|++.++|++|++.|+ +..|.|++|.|+|++
T Consensus 27 ~~~ps~~LfVgNL-p~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 27 AGVPSRVIHIRKL-PIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp CSSCCSEEEEESC-CTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 4567899999999 8999999999999999999999996 6999999999999999999987 468999999999998
Q ss_pred cCCCCC
Q 026341 137 KDDSER 142 (240)
Q Consensus 137 ~~~~~~ 142 (240)
.+..+.
T Consensus 106 ~k~~~~ 111 (119)
T 2ad9_A 106 HKELKT 111 (119)
T ss_dssp SSSCCC
T ss_pred CCCCCc
Confidence 766543
No 54
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.77 E-value=1.3e-18 Score=123.32 Aligned_cols=78 Identities=31% Similarity=0.573 Sum_probs=73.2
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCC
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 139 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 139 (240)
...+.++|||+|| |..+++++|+++|++||.|..|.+.+|||||+|.+.++|++|+..|||..|+|+.|.|+++.+..
T Consensus 27 ~~~~~~~l~V~nL-p~~~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 27 GELSNTRLFVRPF-PLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp -CCSCSEEEECSS-CTTCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 4456899999999 89999999999999999999999999999999999999999999999999999999999998754
No 55
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5e-18 Score=119.63 Aligned_cols=79 Identities=23% Similarity=0.335 Sum_probs=73.0
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
...+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||..||+..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 11 ERNQDATVYVGGL-DEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCTTTEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 4567899999999 8999999999999999999999983 579999999999999999999999999999999
Q ss_pred EEeecCCC
Q 026341 133 EYALKDDS 140 (240)
Q Consensus 133 ~~a~~~~~ 140 (240)
.++.+...
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99987654
No 56
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=8.8e-18 Score=120.35 Aligned_cols=82 Identities=22% Similarity=0.391 Sum_probs=74.2
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
...+.++|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 11 DTSNHFHVFVGDL-SPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CSTTCEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4456899999999 8999999999999999999999984 479999999999999999999999999999999
Q ss_pred EEeecCCCCCC
Q 026341 133 EYALKDDSERD 143 (240)
Q Consensus 133 ~~a~~~~~~~~ 143 (240)
.|+........
T Consensus 90 ~~a~~~~~~~~ 100 (115)
T 2dgo_A 90 NWATRKPPAPK 100 (115)
T ss_dssp EESSCCCCCSC
T ss_pred EEccCCCCCCc
Confidence 99987665433
No 57
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.5e-18 Score=119.25 Aligned_cols=79 Identities=28% Similarity=0.445 Sum_probs=72.9
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
...+.++|||+|| |..+++++|+++|.+||.|..|.|. ++||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 8 ~~~~~~~l~v~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 8 MASDEGKLFVGGL-SFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCSEEEEESC-CTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 4456899999999 8999999999999999999999984 579999999999999999999999999999999
Q ss_pred EEeecCCC
Q 026341 133 EYALKDDS 140 (240)
Q Consensus 133 ~~a~~~~~ 140 (240)
+++.+...
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x5s_A 87 DQAGKSSD 94 (102)
T ss_dssp EEEECCCC
T ss_pred EECCCCCC
Confidence 99987654
No 58
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=5.7e-18 Score=118.06 Aligned_cols=78 Identities=27% Similarity=0.422 Sum_probs=72.4
Q ss_pred CCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEE
Q 026341 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 133 (240)
Q Consensus 62 ~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 133 (240)
..+.++|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|++||..|||..|.|+.|.|.
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 5 SSGSGRLFVRNL-SYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCSCEEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 456789999999 8899999999999999999999983 5899999999999999999999999999999999
Q ss_pred EeecCCC
Q 026341 134 YALKDDS 140 (240)
Q Consensus 134 ~a~~~~~ 140 (240)
++.+...
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9988654
No 59
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=3.9e-18 Score=116.17 Aligned_cols=75 Identities=21% Similarity=0.384 Sum_probs=70.3
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE---------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEE
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~---------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 134 (240)
..++|||+|| |..+++++|+++|.+||.|..+.+ .+|||||+|.+.++|++|+..|||..|+|+.|.|++
T Consensus 3 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRL-TRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 4679999999 899999999999999999999988 578999999999999999999999999999999999
Q ss_pred eecCC
Q 026341 135 ALKDD 139 (240)
Q Consensus 135 a~~~~ 139 (240)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 97654
No 60
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=122.87 Aligned_cols=79 Identities=20% Similarity=0.346 Sum_probs=71.0
Q ss_pred CCCCCCEEEEeccCCCC-CCHHHHHHhhccCCCeEEEEEe--CCeEEEEecCHHHHHHHHHhcC--CCcccCcEEEEEEe
Q 026341 61 NQRPTKTLFVINFDPIR-TRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTD--RSKLVDRVISVEYA 135 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~-~~~~~l~~~f~~~G~i~~~~~~--kg~afV~f~~~~~a~~A~~~l~--g~~~~g~~l~v~~a 135 (240)
...+.++|||+|| |+. +++++|+++|.+||+|..|.|. +|||||+|++.++|+.||+.|| +..|.|++|.|+|+
T Consensus 21 ~~~p~~~l~V~NL-p~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a 99 (112)
T 1x4f_A 21 KQELGRVIHLSNL-PHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 99 (112)
T ss_dssp SSCCCCEEEEESC-CCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEE
T ss_pred cCCCCCEEEEeCC-CCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEC
Confidence 4567899999999 887 9999999999999999999996 6999999999999999999886 45699999999999
Q ss_pred ecCCC
Q 026341 136 LKDDS 140 (240)
Q Consensus 136 ~~~~~ 140 (240)
.....
T Consensus 100 ~~~~~ 104 (112)
T 1x4f_A 100 EKYKK 104 (112)
T ss_dssp CSCSS
T ss_pred ccccc
Confidence 86543
No 61
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.1e-18 Score=120.28 Aligned_cols=79 Identities=34% Similarity=0.438 Sum_probs=72.8
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
...+.++|||+|| |..+++++|+++|.+||.|..|.|. ++||||+|.+.++|++||..|||..|+|+.|.|
T Consensus 9 ~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 9 DVDGMITLKVDNL-TYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp CCSCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCeEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 4566899999999 8999999999999999999999984 589999999999999999999999999999999
Q ss_pred EEeecCCC
Q 026341 133 EYALKDDS 140 (240)
Q Consensus 133 ~~a~~~~~ 140 (240)
+++.....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dnm_A 88 QVARYGRR 95 (103)
T ss_dssp EECSSCCS
T ss_pred EECCcCCC
Confidence 99987543
No 62
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=7.5e-18 Score=117.47 Aligned_cols=79 Identities=23% Similarity=0.447 Sum_probs=72.2
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
...+.++|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|++||+ ||+..|.|+.|.|
T Consensus 6 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 6 SGSKSNKIFVGGI-PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCSSCCEEEEESC-CSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 4456899999999 8999999999999999999999983 6899999999999999999 9999999999999
Q ss_pred EEeecCCCC
Q 026341 133 EYALKDDSE 141 (240)
Q Consensus 133 ~~a~~~~~~ 141 (240)
.++.++...
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2dgs_A 84 KRAEPRDSK 92 (99)
T ss_dssp EECCCCCCC
T ss_pred EECCCCccc
Confidence 999876543
No 63
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.5e-18 Score=119.50 Aligned_cols=79 Identities=25% Similarity=0.495 Sum_probs=72.7
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
...+.++|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|++||..|||..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 11 RADDNATIRVTNL-SEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCSSSEEEEEESC-CTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 4556899999999 8899999999999999999999984 469999999999999999999999999999999
Q ss_pred EEeecCCC
Q 026341 133 EYALKDDS 140 (240)
Q Consensus 133 ~~a~~~~~ 140 (240)
+++.+...
T Consensus 90 ~~a~~~~~ 97 (103)
T 2cq0_A 90 EWAKPSTN 97 (103)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99987653
No 64
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.76 E-value=8.4e-18 Score=124.50 Aligned_cols=80 Identities=23% Similarity=0.449 Sum_probs=73.2
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
...+.++|||+|| |..+++++|+++|+.||+|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|
T Consensus 38 ~~~~~~~l~V~nL-p~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 38 EPDVLRNLMVNYI-PTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CTTTTSEEEEESC-STTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 4456789999999 8999999999999999999999884 679999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 026341 133 EYALKDDSE 141 (240)
Q Consensus 133 ~~a~~~~~~ 141 (240)
+++......
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999876543
No 65
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.76 E-value=2e-18 Score=123.85 Aligned_cols=74 Identities=27% Similarity=0.487 Sum_probs=69.3
Q ss_pred CCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecC
Q 026341 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138 (240)
Q Consensus 65 ~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 138 (240)
..+|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|++||+.|||..|+|+.|.|.++...
T Consensus 5 ~~~lfV~nL-p~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNL-DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCC-CCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 568999999 8999999999999999999999984 689999999999999999999999999999999999765
Q ss_pred C
Q 026341 139 D 139 (240)
Q Consensus 139 ~ 139 (240)
.
T Consensus 84 ~ 84 (115)
T 4f25_A 84 K 84 (115)
T ss_dssp C
T ss_pred c
Confidence 4
No 66
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.5e-18 Score=119.17 Aligned_cols=77 Identities=27% Similarity=0.529 Sum_probs=71.0
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEE-EEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEE
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV-RIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 133 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~-~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 133 (240)
.+.++|||+|| |..+++++|+++|++||.|..| .|+ +|||||+|.+.++|++|+..|||..|.|+.|.|+
T Consensus 3 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNL-DPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECC-CTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45789999999 8899999999999999999988 773 5899999999999999999999999999999999
Q ss_pred EeecCCC
Q 026341 134 YALKDDS 140 (240)
Q Consensus 134 ~a~~~~~ 140 (240)
++.+...
T Consensus 82 ~a~~~~~ 88 (96)
T 1x5t_A 82 YAFKKDS 88 (96)
T ss_dssp ESCCCCC
T ss_pred EecccCC
Confidence 9987654
No 67
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.3e-18 Score=119.94 Aligned_cols=80 Identities=28% Similarity=0.502 Sum_probs=73.3
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
...+.++|||+|| |..+++++|+++|.+||.|..|.|+ ++||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 8 ~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 8 MATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp SCCCCSCEEEESC-CSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 4456899999999 8899999999999999999999983 689999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 026341 133 EYALKDDSE 141 (240)
Q Consensus 133 ~~a~~~~~~ 141 (240)
.++.+....
T Consensus 87 ~~a~~~~~~ 95 (102)
T 2cqb_A 87 NLAKPMRIK 95 (102)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999876543
No 68
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.76 E-value=4e-18 Score=115.39 Aligned_cols=74 Identities=30% Similarity=0.579 Sum_probs=69.5
Q ss_pred CCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEE
Q 026341 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 133 (240)
Q Consensus 62 ~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~--------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 133 (240)
..+.++|||+|| |..+++++|+++|.+||.|..|.+ .+|||||+|.+.++|++|++.|||..|+|+.|.|+
T Consensus 4 ~~~~~~l~V~nl-~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 4 ATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCSSEEEEECC-CTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 456899999999 889999999999999999999988 47899999999999999999999999999999999
Q ss_pred Eee
Q 026341 134 YAL 136 (240)
Q Consensus 134 ~a~ 136 (240)
||+
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 985
No 69
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=3.5e-18 Score=129.07 Aligned_cols=79 Identities=23% Similarity=0.391 Sum_probs=72.6
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
...+.++|||+|| |..+++++|+++|++||+|..|.|+ ++||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 35 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 35 LLKKSCTLYVGNL-SFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTCCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 4456899999999 8999999999999999999999983 579999999999999999999999999999999
Q ss_pred EEeecCCC
Q 026341 133 EYALKDDS 140 (240)
Q Consensus 133 ~~a~~~~~ 140 (240)
+|+.+...
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99987543
No 70
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.76 E-value=7.3e-18 Score=118.76 Aligned_cols=80 Identities=25% Similarity=0.423 Sum_probs=73.2
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccC---cEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVD---RVI 130 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g---~~l 130 (240)
...+.++|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|++||+.|||..|.| +.|
T Consensus 11 ~~~~~~~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGML-NKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 3456899999999 8999999999999999999999985 5899999999999999999999999998 999
Q ss_pred EEEEeecCCCC
Q 026341 131 SVEYALKDDSE 141 (240)
Q Consensus 131 ~v~~a~~~~~~ 141 (240)
.|.++.....+
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99999887643
No 71
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=6e-18 Score=118.18 Aligned_cols=79 Identities=19% Similarity=0.407 Sum_probs=72.5
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 133 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 133 (240)
...+.++|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|++|++.|||..|.|+.|.|.
T Consensus 13 ~~~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGL-PFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4456789999999 8999999999999999999999985 4899999999999999999999999999999999
Q ss_pred EeecCCC
Q 026341 134 YALKDDS 140 (240)
Q Consensus 134 ~a~~~~~ 140 (240)
++.+...
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9987653
No 72
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=6.8e-18 Score=117.27 Aligned_cols=78 Identities=24% Similarity=0.404 Sum_probs=72.2
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--CCeEEEEecCHHHHHHHHHhcCCCccc--CcEEEEEEee
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLV--DRVISVEYAL 136 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--kg~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~a~ 136 (240)
...+.++|||+|| |..+++++|+++|++||.|..|.+. ++||||+|.+.++|++|++.||+..|. |+.|.|+|++
T Consensus 13 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 13 KANPTTRLWVGGL-GPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCCSCEEEECC-CSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 3456789999999 8899999999999999999999996 579999999999999999999999999 9999999998
Q ss_pred cCC
Q 026341 137 KDD 139 (240)
Q Consensus 137 ~~~ 139 (240)
++.
T Consensus 92 ~~~ 94 (97)
T 1why_A 92 SGP 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 73
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.6e-18 Score=117.70 Aligned_cols=78 Identities=18% Similarity=0.352 Sum_probs=70.1
Q ss_pred CCCCCEEEEeccCCCCCCHHHHHHhhccCCC-eEEEEE-eCCeEEEEecCHHHHHHHHHhcCC-CcccCcEEEEEEeecC
Q 026341 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGN-VLHVRI-RRNFAFVQFETQEEATKALESTDR-SKLVDRVISVEYALKD 138 (240)
Q Consensus 62 ~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~-i~~~~~-~kg~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~~a~~~ 138 (240)
..+.++|||+|| |..+++++|+++|.+||. |..+.+ .++||||+|.+.++|++|++.||| ..|+|+.|.|+++.+.
T Consensus 5 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 5 SSGMNKLYIGNL-SPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCCEEEECC-CTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 346789999999 899999999999999998 665555 589999999999999999999999 9999999999999875
Q ss_pred CC
Q 026341 139 DS 140 (240)
Q Consensus 139 ~~ 140 (240)
..
T Consensus 84 ~~ 85 (93)
T 2cqh_A 84 KL 85 (93)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 74
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.75 E-value=5.4e-18 Score=114.21 Aligned_cols=74 Identities=24% Similarity=0.483 Sum_probs=69.0
Q ss_pred CCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEee
Q 026341 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136 (240)
Q Consensus 65 ~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 136 (240)
+.+|||+|| |..+++++|+++|.+||.|..+.+. +|||||+|.+.++|++|+..|||..|.|+.|.|+++.
T Consensus 1 t~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDL-NVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEECC-CTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CeEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 368999999 8899999999999999999999884 6899999999999999999999999999999999998
Q ss_pred cCC
Q 026341 137 KDD 139 (240)
Q Consensus 137 ~~~ 139 (240)
++.
T Consensus 80 ~~~ 82 (83)
T 3md1_A 80 KLE 82 (83)
T ss_dssp CCC
T ss_pred cCC
Confidence 753
No 75
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=116.53 Aligned_cols=79 Identities=29% Similarity=0.439 Sum_probs=73.1
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecC
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 138 (240)
...+.++|||+|| |..+++++|+++|.+||.|..|.+. ++||||+|.+.++|++|++.|||..|.|+.|.|.++.+.
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 11 TFTQRSRLFVGNL-PPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCCCTTEEEEESC-CTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 4456789999999 8899999999999999999999996 599999999999999999999999999999999999875
Q ss_pred CC
Q 026341 139 DS 140 (240)
Q Consensus 139 ~~ 140 (240)
..
T Consensus 90 ~~ 91 (99)
T 2cpj_A 90 AS 91 (99)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 76
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=8.5e-18 Score=115.99 Aligned_cols=75 Identities=28% Similarity=0.506 Sum_probs=69.9
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
..++.++|||+|| |..+++++|+++|.+||.|..|.+. ++||||+|.+.++|++|++.||+..|.|+.|.|
T Consensus 12 ~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 12 LAPSKSTVYVSNL-PFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp CCCCTTSEEEESC-CTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 4556889999999 8999999999999999999999984 579999999999999999999999999999999
Q ss_pred EEee
Q 026341 133 EYAL 136 (240)
Q Consensus 133 ~~a~ 136 (240)
+||+
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 77
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=6.9e-18 Score=117.40 Aligned_cols=77 Identities=23% Similarity=0.384 Sum_probs=70.9
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe-----------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEE
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-----------RNFAFVQFETQEEATKALESTDRSKLVDRVIS 131 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~-----------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 131 (240)
.+.++|||+|| |..+++++|+++|++||.|..|.|. ++||||+|.+.++|++||..|||..|.|+.|.
T Consensus 3 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNL-NFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 45789999999 8999999999999999999999884 36999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 026341 132 VEYALKDDS 140 (240)
Q Consensus 132 v~~a~~~~~ 140 (240)
|.++.....
T Consensus 82 V~~a~~~~~ 90 (98)
T 2cpf_A 82 VRISERATK 90 (98)
T ss_dssp EECSSCSSC
T ss_pred EEEccCCCC
Confidence 999987653
No 78
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.75 E-value=4.6e-18 Score=115.62 Aligned_cols=75 Identities=21% Similarity=0.380 Sum_probs=67.9
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEE
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 134 (240)
.+..+|||+|| |..+++++|+++|++||.|..|.+. +|||||+|.+.++|++|++.|||..|+|+.|.|+|
T Consensus 4 ~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGDL-SPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCceEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 45789999999 8899999999999999999999984 47999999999999999999999999999999999
Q ss_pred eecC
Q 026341 135 ALKD 138 (240)
Q Consensus 135 a~~~ 138 (240)
+.++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9764
No 79
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.75 E-value=6.6e-18 Score=117.12 Aligned_cols=75 Identities=20% Similarity=0.465 Sum_probs=70.4
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEe
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 135 (240)
|.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++|++.|||..|+|+.|.|.++
T Consensus 1 P~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSI-PYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 4689999999 8999999999999999999999984 689999999999999999999999999999999999
Q ss_pred ecCC
Q 026341 136 LKDD 139 (240)
Q Consensus 136 ~~~~ 139 (240)
.+..
T Consensus 80 ~~~~ 83 (96)
T 2x1f_A 80 SNSD 83 (96)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 8754
No 80
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-17 Score=117.13 Aligned_cols=77 Identities=27% Similarity=0.446 Sum_probs=70.6
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe---------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---------RNFAFVQFETQEEATKALESTDRSKLVDRVIS 131 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~---------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 131 (240)
...+.++|||+|| |..+++++|+++|.+|| |..|.|+ +|||||+|.+.++|++|| .||+..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 11 PKSPPYTAFLGNL-PYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp CSSSCEEEEEESC-CSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCCCEEEEeCC-CCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 3456799999999 89999999999999999 9999984 579999999999999999 9999999999999
Q ss_pred EEEeecCCC
Q 026341 132 VEYALKDDS 140 (240)
Q Consensus 132 v~~a~~~~~ 140 (240)
|+++.++..
T Consensus 88 V~~a~~~~~ 96 (104)
T 1wi8_A 88 VDVADQAQD 96 (104)
T ss_dssp EEECCCCCC
T ss_pred EEEccCCCC
Confidence 999987654
No 81
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.75 E-value=5.8e-18 Score=116.38 Aligned_cols=78 Identities=27% Similarity=0.377 Sum_probs=72.2
Q ss_pred CCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEe
Q 026341 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135 (240)
Q Consensus 62 ~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 135 (240)
..+.++|||+|| |..+++++|+++|.+||.|..|.|. ++||||+|.+.++|++|+..||+..|.|+.|.|+++
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 5 SSGACQIFVRNL-PFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSCCEEEECSC-CTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 456889999999 8999999999999999999999985 589999999999999999999999999999999999
Q ss_pred ecCCC
Q 026341 136 LKDDS 140 (240)
Q Consensus 136 ~~~~~ 140 (240)
++...
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 87653
No 82
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-18 Score=119.69 Aligned_cols=75 Identities=24% Similarity=0.468 Sum_probs=67.3
Q ss_pred CCEEEEeccCCCCCCHHHHHHhhccCC-CeEEEEEe--------CCeEEEEecCHHHHHHHHHhcC-CCcccCcEEEEEE
Q 026341 65 TKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRIR--------RNFAFVQFETQEEATKALESTD-RSKLVDRVISVEY 134 (240)
Q Consensus 65 ~~~l~v~nl~~~~~~~~~l~~~f~~~G-~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v~~ 134 (240)
+++|||+|| |..+|+++|+++|++|| +|..|.|+ +|||||+|.+.++|++||+.|+ +..|+|++|.|+|
T Consensus 1 S~~i~v~nL-p~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRML-PQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETC-CSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 368999999 99999999999999999 89988873 6899999999999999999874 5679999999999
Q ss_pred eecCCC
Q 026341 135 ALKDDS 140 (240)
Q Consensus 135 a~~~~~ 140 (240)
|.++..
T Consensus 80 a~~~~~ 85 (91)
T 2lxi_A 80 SDPKPK 85 (91)
T ss_dssp CCSCCC
T ss_pred cCCCCC
Confidence 987654
No 83
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.2e-18 Score=119.01 Aligned_cols=78 Identities=26% Similarity=0.483 Sum_probs=72.1
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
...+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++|+..|||..|.|+.|.|
T Consensus 19 ~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 19 RSVEGWILFVTGV-HEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CBTTBEEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 4456789999999 8899999999999999999999984 589999999999999999999999999999999
Q ss_pred EEeecCC
Q 026341 133 EYALKDD 139 (240)
Q Consensus 133 ~~a~~~~ 139 (240)
+++.++.
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9998754
No 84
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=6.1e-18 Score=121.21 Aligned_cols=79 Identities=20% Similarity=0.441 Sum_probs=72.4
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
...+.++|||+|| |..+++++|+++|.+||.|..|.|. ++||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 21 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 21 EGPEGANLFIYHL-PQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCSTTCCEEEESC-CSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4456789999999 8999999999999999999999884 479999999999999999999999999999999
Q ss_pred EEeecCCC
Q 026341 133 EYALKDDS 140 (240)
Q Consensus 133 ~~a~~~~~ 140 (240)
+|++++..
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpz_A 100 QLKRSKND 107 (115)
T ss_dssp ECCCCSCC
T ss_pred EEcCCCCc
Confidence 99987654
No 85
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.6e-17 Score=118.16 Aligned_cols=79 Identities=30% Similarity=0.481 Sum_probs=72.9
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcC------CCccc
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTD------RSKLV 126 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~------g~~~~ 126 (240)
...+.++|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|++||..|| +..|+
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 11 DVTEGKTVFIRNL-SFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred cCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 4556889999999 8999999999999999999999984 6899999999999999999999 99999
Q ss_pred CcEEEEEEeecCCC
Q 026341 127 DRVISVEYALKDDS 140 (240)
Q Consensus 127 g~~l~v~~a~~~~~ 140 (240)
|+.|.|.++.+...
T Consensus 90 g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 90 GRQLKVDLAVTRDE 103 (111)
T ss_dssp SCEEEEECCCCCCC
T ss_pred CEEEEEEECCCCcc
Confidence 99999999987654
No 86
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.2e-17 Score=117.64 Aligned_cols=78 Identities=19% Similarity=0.387 Sum_probs=71.2
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
...+.++|||+|| |..+++++|+++|.+||.|..|.|. ++||||+|.+.++|++||..|++ .|.|+.|.|
T Consensus 13 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 13 KDTTFTKIFVGGL-PYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CSCSSSEEEEECC-CSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 4556899999999 8999999999999999999999984 57999999999999999999998 899999999
Q ss_pred EEeecCCC
Q 026341 133 EYALKDDS 140 (240)
Q Consensus 133 ~~a~~~~~ 140 (240)
+++.....
T Consensus 91 ~~a~~~~~ 98 (116)
T 2cqd_A 91 NLAYLGAK 98 (116)
T ss_dssp EESTTTCC
T ss_pred EEcccCCC
Confidence 99976543
No 87
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=9.3e-18 Score=113.61 Aligned_cols=75 Identities=24% Similarity=0.454 Sum_probs=69.7
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--CCeEEEEecCHHHHHHHHHhc-CCCcccCcEEEEEEee
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALEST-DRSKLVDRVISVEYAL 136 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--kg~afV~f~~~~~a~~A~~~l-~g~~~~g~~l~v~~a~ 136 (240)
...+.++|||+|| |..+++++|+++|.+||.|..|.+. +|||||+|.+.++|++|+..| ++..|.|+.|.|+|++
T Consensus 8 ~~~~~~~l~V~~l-~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 8 EDKTITTLYVGGL-GDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCSSCCCEEEECC-TTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCccEEEEcCC-CCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 4456789999999 8899999999999999999999996 599999999999999999999 9999999999999974
No 88
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.74 E-value=9.9e-18 Score=119.13 Aligned_cols=79 Identities=22% Similarity=0.467 Sum_probs=72.9
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
...+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++|+..|||..|.|+.|.|
T Consensus 22 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 22 RSVEGWILFVTSI-HEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CBTTBEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 4456789999999 8899999999999999999999984 689999999999999999999999999999999
Q ss_pred EEeecCCC
Q 026341 133 EYALKDDS 140 (240)
Q Consensus 133 ~~a~~~~~ 140 (240)
.|+.+...
T Consensus 101 ~~a~~~~~ 108 (110)
T 1oo0_B 101 DWCFVKGP 108 (110)
T ss_dssp EESEESSC
T ss_pred EEcccCCC
Confidence 99987653
No 89
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=118.76 Aligned_cols=79 Identities=18% Similarity=0.443 Sum_probs=73.0
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecC
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 138 (240)
...+.++|||+|| |..+++++|+++|.+||.|..|.|. ++||||+|.+.++|++|+..|||..|.|+.|.|.|+++.
T Consensus 21 ~~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 21 SSPKNCTVYCGGI-ASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SCSSCCEEEEECC-SSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 3456789999999 8899999999999999999999996 699999999999999999999999999999999999876
Q ss_pred CC
Q 026341 139 DS 140 (240)
Q Consensus 139 ~~ 140 (240)
..
T Consensus 100 ~~ 101 (109)
T 1x4g_A 100 PD 101 (109)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 90
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=7.2e-18 Score=118.59 Aligned_cols=80 Identities=19% Similarity=0.324 Sum_probs=72.6
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhcc-CCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCc-ccCcEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEP-YGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSK-LVDRVIS 131 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~-~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~-~~g~~l~ 131 (240)
...+.++|||+|| |..+++++|+++|.+ ||.|..|.|. +|||||+|.+.++|++||..||+.. |.|+.|.
T Consensus 5 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDL-TPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECC-CTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456789999999 889999999999999 9999999984 6899999999999999999999999 9999999
Q ss_pred EEEeecCCCC
Q 026341 132 VEYALKDDSE 141 (240)
Q Consensus 132 v~~a~~~~~~ 141 (240)
|+++.+....
T Consensus 84 v~~a~~~~~~ 93 (104)
T 2dhg_A 84 LSVAIPKASR 93 (104)
T ss_dssp CCBCCCCCSC
T ss_pred EEEccCCCcC
Confidence 9999776543
No 91
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.4e-17 Score=116.44 Aligned_cols=79 Identities=29% Similarity=0.584 Sum_probs=72.9
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe---------CCeEEEEecCHHHHHHHHHhc-CCCcccCcEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---------RNFAFVQFETQEEATKALEST-DRSKLVDRVI 130 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~---------kg~afV~f~~~~~a~~A~~~l-~g~~~~g~~l 130 (240)
...+.++|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|++||..| |+..|.|+.|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 11 KKQTTSKILVRNI-PFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CSSCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred cCCCCCEEEEeCC-CCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 4566899999999 8999999999999999999999983 579999999999999999999 9999999999
Q ss_pred EEEEeecCCC
Q 026341 131 SVEYALKDDS 140 (240)
Q Consensus 131 ~v~~a~~~~~ 140 (240)
.|+|+.+...
T Consensus 90 ~v~~a~~~~~ 99 (107)
T 2cph_A 90 VLEWADSEVT 99 (107)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999987654
No 92
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.74 E-value=9e-18 Score=118.72 Aligned_cols=75 Identities=21% Similarity=0.337 Sum_probs=70.5
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 133 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 133 (240)
...+.++|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|+
T Consensus 25 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 4567899999999 8999999999999999999999985 6799999999999999999999999999999999
Q ss_pred Eee
Q 026341 134 YAL 136 (240)
Q Consensus 134 ~a~ 136 (240)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 93
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=4.5e-17 Score=116.40 Aligned_cols=78 Identities=27% Similarity=0.326 Sum_probs=71.8
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 133 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 133 (240)
...+.++|||+|| |..+++++|+++|.+||.|..|.|. ++||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 11 ~~~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANL-DYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 4556899999999 8999999999999999999999984 5799999999999999999999999999999999
Q ss_pred EeecCC
Q 026341 134 YALKDD 139 (240)
Q Consensus 134 ~a~~~~ 139 (240)
++....
T Consensus 90 ~a~~~~ 95 (114)
T 2do0_A 90 MDERAL 95 (114)
T ss_dssp ECSCCC
T ss_pred EcccCC
Confidence 987644
No 94
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.74 E-value=1.5e-17 Score=117.34 Aligned_cols=79 Identities=25% Similarity=0.427 Sum_probs=72.2
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcc---cCcE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKL---VDRV 129 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~---~g~~ 129 (240)
...+.++|||+|| |..+++++|+++|++||.|..|.|+ +|||||+|.+.++|++||+.||+..+ .|+.
T Consensus 9 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 9 KDHDAIKLFIGQI-PRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCTTCEEEEEESC-CTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 4456889999999 8999999999999999999999984 58999999999999999999999988 8999
Q ss_pred EEEEEeecCCC
Q 026341 130 ISVEYALKDDS 140 (240)
Q Consensus 130 l~v~~a~~~~~ 140 (240)
|.|.++.....
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999987654
No 95
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.2e-18 Score=119.44 Aligned_cols=77 Identities=34% Similarity=0.564 Sum_probs=72.0
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 134 (240)
...+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++|+..|||..|+|+.|.|++
T Consensus 25 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 25 NKSQPKRLHVSNI-PFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp CTTCCCEEEEESC-CTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECC-CCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4556899999999 8899999999999999999999995 78999999999999999999999999999999999
Q ss_pred eecC
Q 026341 135 ALKD 138 (240)
Q Consensus 135 a~~~ 138 (240)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9764
No 96
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.74 E-value=1.4e-17 Score=115.63 Aligned_cols=78 Identities=28% Similarity=0.543 Sum_probs=71.7
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHH----HhhccCCCeEEEEEe-----CCeEEEEecCHHHHHHHHHhcCCCcccCcEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIK----RHFEPYGNVLHVRIR-----RNFAFVQFETQEEATKALESTDRSKLVDRVIS 131 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~----~~f~~~G~i~~~~~~-----kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 131 (240)
...+.++|||+|| |..+++++|+ ++|.+||.|..|.+. +|||||+|.+.++|+.|+..|||..|.|+.|.
T Consensus 4 ~~~~~~~l~V~nL-p~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 4 ETRPNHTIYINNL-NEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp --CCCSEEEEESC-CTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 4467899999999 8999999999 999999999999985 79999999999999999999999999999999
Q ss_pred EEEeecCC
Q 026341 132 VEYALKDD 139 (240)
Q Consensus 132 v~~a~~~~ 139 (240)
|+|+.+..
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99998754
No 97
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.9e-18 Score=116.08 Aligned_cols=76 Identities=36% Similarity=0.504 Sum_probs=70.4
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
...+.++|||+|| |..+++++|+++|.+||.|..|.+. ++||||+|.+.++|++|+..|||..|.|+.|.|
T Consensus 11 ~~~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 11 NPDPNCCLGVFGL-SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp SCCGGGCEEEESC-CSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4566899999999 8899999999999999999999984 479999999999999999999999999999999
Q ss_pred EEeec
Q 026341 133 EYALK 137 (240)
Q Consensus 133 ~~a~~ 137 (240)
+|++.
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99864
No 98
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=121.37 Aligned_cols=78 Identities=14% Similarity=0.305 Sum_probs=70.5
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHH----HhhccCCCeEEEEEe-----CCeEEEEecCHHHHHHHHHhcCCCcccCcEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIK----RHFEPYGNVLHVRIR-----RNFAFVQFETQEEATKALESTDRSKLVDRVIS 131 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~----~~f~~~G~i~~~~~~-----kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 131 (240)
...+.++|||+|| ++.+++++|+ ++|++||.|..|.+. +|||||+|.+.++|+.|+..|||..|.|++|.
T Consensus 25 ~~~p~~~LfV~nL-~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 25 HTEPSQVVLITNI-NPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CCSCCSEEEEESC-CTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 4456889999999 8899998866 699999999999884 68999999999999999999999999999999
Q ss_pred EEEeecCC
Q 026341 132 VEYALKDD 139 (240)
Q Consensus 132 v~~a~~~~ 139 (240)
|.|++...
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99998653
No 99
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=115.90 Aligned_cols=77 Identities=23% Similarity=0.375 Sum_probs=69.4
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe----CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEee
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR----RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~----kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 136 (240)
.....++|||+|| |..+++++|+++|.+||.|. +.+. +|||||+|.+.++|++|+..|||..|.|+.|.|+++.
T Consensus 15 ~~~~~~~l~V~nL-~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 15 GAPLAADVYVGNL-PRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp SSCCCCEEEEECC-CTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCCCEEEEeCC-CCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3445789999999 89999999999999999986 4543 7999999999999999999999999999999999998
Q ss_pred cCC
Q 026341 137 KDD 139 (240)
Q Consensus 137 ~~~ 139 (240)
++.
T Consensus 93 ~~~ 95 (97)
T 2e5j_A 93 QQR 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 100
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.73 E-value=6.9e-18 Score=116.69 Aligned_cols=74 Identities=26% Similarity=0.424 Sum_probs=66.1
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhccCCC--eEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCc----ccCc
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGN--VLHVRIR--------RNFAFVQFETQEEATKALESTDRSK----LVDR 128 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~--i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~----~~g~ 128 (240)
..-.+|||+|| |+.+|+++|+++|++||. |..|.++ +|||||+|.+.++|++||+.|||.. |+|+
T Consensus 7 ~~m~tlfV~nL-~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 7 HHMDTIILRNI-APHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CCCCEEEEESC-CTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CccCEEEEeCC-CCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 34679999999 889999999999999995 5677763 6899999999999999999999974 8999
Q ss_pred EEEEEEeec
Q 026341 129 VISVEYALK 137 (240)
Q Consensus 129 ~l~v~~a~~ 137 (240)
+|.|+||+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999975
No 101
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=115.78 Aligned_cols=76 Identities=18% Similarity=0.280 Sum_probs=69.8
Q ss_pred CCCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEE--------EEEe--------CCeEEEEecCHHHHHHHHHhcCCC
Q 026341 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH--------VRIR--------RNFAFVQFETQEEATKALESTDRS 123 (240)
Q Consensus 60 ~~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~--------~~~~--------kg~afV~f~~~~~a~~A~~~l~g~ 123 (240)
....+.++|||+|| |..+++++|+++|++||.|.. +.+. +|||||+|.+.++|++|++.|||.
T Consensus 8 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 8 HSHSDNNTIFVQGL-GENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CSCCCCSEEEEECC-CSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 35567899999999 899999999999999999998 7773 579999999999999999999999
Q ss_pred cccCcEEEEEEee
Q 026341 124 KLVDRVISVEYAL 136 (240)
Q Consensus 124 ~~~g~~l~v~~a~ 136 (240)
.|.|+.|.|++|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999974
No 102
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=115.68 Aligned_cols=78 Identities=23% Similarity=0.347 Sum_probs=69.2
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE----eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEee
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~----~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 136 (240)
...+.++|||+|| |..+++++|+++|.+||.|.-+.. .++||||+|.+.++|++||..||+..|.|+.|.|+|+.
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 11 WSGESKTLVLSNL-SYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CSCCCSEEEEESC-CTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 4456899999999 889999999999999998843322 47899999999999999999999999999999999998
Q ss_pred cCC
Q 026341 137 KDD 139 (240)
Q Consensus 137 ~~~ 139 (240)
+..
T Consensus 90 ~~~ 92 (101)
T 2fc9_A 90 PRG 92 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
No 103
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=3.5e-17 Score=114.90 Aligned_cols=77 Identities=29% Similarity=0.463 Sum_probs=69.9
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
...+.++|||+|| |..+++++|+++|.+|| |..|.|+ +|||||+|.+.++|++|| .||+..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 11 PTEPPYTAYVGNL-PFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CSSSCEEEEEESC-CTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCeEEEEeCC-CCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 4456899999999 99999999999999997 9999884 579999999999999999 89999999999999
Q ss_pred EEeecCCC
Q 026341 133 EYALKDDS 140 (240)
Q Consensus 133 ~~a~~~~~ 140 (240)
+++.+...
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dng_A 88 DIAEGRKQ 95 (103)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99987543
No 104
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.9e-17 Score=118.20 Aligned_cols=79 Identities=20% Similarity=0.246 Sum_probs=71.6
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeE--------EEEEe--------CCeEEEEecCHHHHHHHHHhcCCCc
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRIR--------RNFAFVQFETQEEATKALESTDRSK 124 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~--------~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~ 124 (240)
...+.++|||+|| |..+++++|+++|.+||.|. .|.|. +|||||+|.+.++|++||+.|||..
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 11 EDSDNSAIYVQGL-NDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCEEEEECC-CTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred cCCCCCEEEEcCC-CCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 4456899999999 89999999999999999998 57773 6899999999999999999999999
Q ss_pred ccCcEEEEEEeecCCC
Q 026341 125 LVDRVISVEYALKDDS 140 (240)
Q Consensus 125 ~~g~~l~v~~a~~~~~ 140 (240)
|.|+.|.|.++.....
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPP 105 (113)
T ss_dssp ETTEECEEECSSCCCC
T ss_pred cCCCEEEEEECCCCCC
Confidence 9999999999987654
No 105
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=8.4e-18 Score=117.66 Aligned_cols=73 Identities=26% Similarity=0.404 Sum_probs=69.0
Q ss_pred CEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe---CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCC
Q 026341 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 139 (240)
Q Consensus 66 ~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~---kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 139 (240)
++|||+|| |..+++++|+++|++||+|..|.+. ++||||+|.+.++|++|++.|||..|.|+.|.|+++.+..
T Consensus 1 ~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNL-GTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECC-CSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 47999999 8899999999999999999999994 7899999999999999999999999999999999998765
No 106
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3e-17 Score=117.52 Aligned_cols=80 Identities=26% Similarity=0.471 Sum_probs=71.5
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCe----EEEEEe----CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNV----LHVRIR----RNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i----~~~~~~----kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
...+.++|||+|| |..+++++|+++|.+||.| ..+.+. +|||||+|.+.++|++||..|||..|.|+.|.|
T Consensus 21 ~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 21 PGEPNKVLYLKNL-SPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CCSCCSEEEEECC-CTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4557899999999 8999999999999999988 555553 689999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 026341 133 EYALKDDSE 141 (240)
Q Consensus 133 ~~a~~~~~~ 141 (240)
+|+.+....
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpx_A 100 EFGKNKKQR 108 (115)
T ss_dssp EECCCCSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 107
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=2.2e-17 Score=117.06 Aligned_cols=78 Identities=23% Similarity=0.414 Sum_probs=71.8
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
...+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|+.|++.|||..|.|+.|.|
T Consensus 22 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 22 GSAGPMRLYVGSL-HFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp SCSSCEEEEEECC-CSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4556789999999 8899999999999999999999984 579999999999999999999999999999999
Q ss_pred EEeecCC
Q 026341 133 EYALKDD 139 (240)
Q Consensus 133 ~~a~~~~ 139 (240)
++++++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9998653
No 108
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=118.50 Aligned_cols=75 Identities=24% Similarity=0.288 Sum_probs=70.2
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCC
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 139 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 139 (240)
..++|||+|| |..+++++|+++|.+||.|..|.|+ ++||||+|.+.++|+.||..|||..|.|+.|.|+|+....
T Consensus 9 ~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 9 SKTVILAKNL-PAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 3679999999 8999999999999999999999984 7899999999999999999999999999999999998643
No 109
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.73 E-value=1.1e-17 Score=122.45 Aligned_cols=79 Identities=35% Similarity=0.569 Sum_probs=72.9
Q ss_pred CCCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEE
Q 026341 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVIS 131 (240)
Q Consensus 60 ~~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 131 (240)
....+.++|||+|| |..+++++|+++|.+||+|..|.|. +|||||+|.+.++|++||+.|||..|+|+.|.
T Consensus 41 ~~~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 41 ANPDPNCCLGVFGL-SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SCCCCSSCBCEETC-TTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 35567899999999 8999999999999999999999984 58999999999999999999999999999999
Q ss_pred EEEeecCC
Q 026341 132 VEYALKDD 139 (240)
Q Consensus 132 v~~a~~~~ 139 (240)
|+|+.++.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998754
No 110
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.73 E-value=2e-18 Score=127.60 Aligned_cols=118 Identities=19% Similarity=0.258 Sum_probs=67.6
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHHHHhh
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHF 87 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~f 87 (240)
+|+||.+|.-++.+-.|+..+..+. +|...--...... .........+|||+|| |+.+++++|+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~---gg~~~g~~~g~~~---------~~~~~~~~~~lfV~nL-p~~~te~dL~~~F 67 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASMT---GGQQMGRGSGDSE---------FTVQSTTGHCVHMRGL-PYKATENDIYNFF 67 (139)
T ss_dssp --------------------------------------------------------CCCCEECCSC-CTTCCHHHHHHHH
T ss_pred CCcccccccCccccchhcccchhcc---CCCCCCCCCCCcc---------cCCCCCCCCEEEEeCC-CCCCCHHHHHHHH
Confidence 4789999999988877777655552 2333211111100 1123345789999999 9999999999999
Q ss_pred ccCCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCCC
Q 026341 88 EPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 140 (240)
Q Consensus 88 ~~~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 140 (240)
++|| |..|.|+ +|||||+|++.++|++|| .+|+..|.|+.|.|.++.....
T Consensus 68 ~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 68 SPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred HhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 9999 6688884 689999999999999999 7899999999999999887654
No 111
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-17 Score=118.04 Aligned_cols=78 Identities=17% Similarity=0.323 Sum_probs=71.4
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHH---HhhccCCCeEEEEEe-----------CCeEEEEecCHHHHHHHHHhcCCCccc
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIK---RHFEPYGNVLHVRIR-----------RNFAFVQFETQEEATKALESTDRSKLV 126 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~---~~f~~~G~i~~~~~~-----------kg~afV~f~~~~~a~~A~~~l~g~~~~ 126 (240)
...+.++|||+|| |+.+++++|+ ++|.+||+|..|.|. +|||||+|.+.++|++||+.|||..|+
T Consensus 11 r~~~~~~l~V~nL-p~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 11 RVVQKNLVFVVGL-SQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCSSCEEEEEE-CTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred cccCCCEEEEECC-CCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 3445789999999 8999999999 999999999999985 269999999999999999999999999
Q ss_pred CcEEEEEEeecCC
Q 026341 127 DRVISVEYALKDD 139 (240)
Q Consensus 127 g~~l~v~~a~~~~ 139 (240)
|+.|.|+||.++.
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999998765
No 112
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=115.27 Aligned_cols=76 Identities=28% Similarity=0.377 Sum_probs=70.2
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 133 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 133 (240)
...+.++|||+|| |..+++++|+++|.+||+|..|.|. ++||||+|.+.++|++|++.||+..|.|+.|.|+
T Consensus 12 ~~~~~~~l~v~nl-p~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNL-EARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 4456789999999 8899999999999999999999984 5799999999999999999999999999999999
Q ss_pred Eeec
Q 026341 134 YALK 137 (240)
Q Consensus 134 ~a~~ 137 (240)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9863
No 113
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=6.9e-17 Score=116.72 Aligned_cols=73 Identities=22% Similarity=0.212 Sum_probs=66.3
Q ss_pred CEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--CCe-EEEEecCHHHHHHHHHhcCCCcccC--cEEEEEEeecCC
Q 026341 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNF-AFVQFETQEEATKALESTDRSKLVD--RVISVEYALKDD 139 (240)
Q Consensus 66 ~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--kg~-afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~ 139 (240)
..|||+|| ++.+++++|+++|++||.|..|.|. .|| |||+|.+.++|+.|++.|||..|.| +.|.|++|++..
T Consensus 26 l~l~V~NL-~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 26 LLLSIQNP-LYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEEESC-CSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEEcCc-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 34679999 9999999999999999999999884 386 9999999999999999999999988 699999998764
No 114
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.2e-17 Score=117.20 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=71.0
Q ss_pred CCCCCCEEEE--eccCCCCCCHHHHHHhhccCCCeEEEEEe--CCeEEEEecCHHHHHHHHHhcCCCcc-----cCcEEE
Q 026341 61 NQRPTKTLFV--INFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKL-----VDRVIS 131 (240)
Q Consensus 61 ~~~~~~~l~v--~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--kg~afV~f~~~~~a~~A~~~l~g~~~-----~g~~l~ 131 (240)
...|+.+||| +|| ++.+++++|+++|++||.|..|.|+ +|||||+|.+.++|++|++.|||.+| .|.+|.
T Consensus 21 ~~~pt~~L~V~Ng~L-~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 21 VSYATQSLVVANGGL-GNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp CSSCCSEEEEETCTG-GGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCCEEEEECCCC-CCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 3456889999 779 8999999999999999999999986 68999999999999999999999988 689999
Q ss_pred EEEeecCCC
Q 026341 132 VEYALKDDS 140 (240)
Q Consensus 132 v~~a~~~~~ 140 (240)
|.|+.....
T Consensus 100 v~~a~~~p~ 108 (114)
T 2cq2_A 100 LNFVEKVQW 108 (114)
T ss_dssp EEEESCCCC
T ss_pred EEecccCcc
Confidence 999986543
No 115
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.72 E-value=2.6e-17 Score=118.39 Aligned_cols=75 Identities=21% Similarity=0.466 Sum_probs=69.5
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
...+.++|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|++|++.|||..|+|+.|.|
T Consensus 36 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 36 EGPEGCNLFIYHL-PQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCSEEEEEECS-CTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4566799999999 8999999999999999999999984 689999999999999999999999999999999
Q ss_pred EEee
Q 026341 133 EYAL 136 (240)
Q Consensus 133 ~~a~ 136 (240)
+|++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9974
No 116
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.72 E-value=9.7e-18 Score=117.21 Aligned_cols=74 Identities=16% Similarity=0.255 Sum_probs=69.1
Q ss_pred CCCEEEEeccCCC------CCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccC-c
Q 026341 64 PTKTLFVINFDPI------RTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVD-R 128 (240)
Q Consensus 64 ~~~~l~v~nl~~~------~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g-~ 128 (240)
..++|||+|| |+ .+++++|+++|++||.|..|.|+ +|||||+|.+.++|++||+.|||..|.| +
T Consensus 5 ~~~~vfV~nL-p~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 5 SDQYIVVNGA-PVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp GGGEEEEESC-CCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred cCcEEEEeCC-CcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3689999999 99 99999999999999999999983 6999999999999999999999999999 9
Q ss_pred EEEEEEeecC
Q 026341 129 VISVEYALKD 138 (240)
Q Consensus 129 ~l~v~~a~~~ 138 (240)
.|.|.++.+.
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999999753
No 117
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=9.2e-18 Score=117.44 Aligned_cols=74 Identities=18% Similarity=0.352 Sum_probs=69.6
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeec
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 137 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 137 (240)
...++|||+|| |..+++++|+++|.+||.|..|.+. +|||||+|.+.++|++|+..|||..|+|+.|.|.|+++
T Consensus 25 ~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNI-PHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESC-CTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCC-CcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 44689999999 8899999999999999999999985 79999999999999999999999999999999999875
No 118
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5e-17 Score=113.82 Aligned_cols=79 Identities=25% Similarity=0.430 Sum_probs=68.9
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE-----eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEe
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~-----~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 135 (240)
...+.++|||+|| |..+++++|+++|..|+.|..+.. .++||||+|.+.++|++||+.||+..|.|+.|.|+|+
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 11 RSQPSKTLFVKGL-SEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp SSCCCSSEEEECC-CTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEeCC-CCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 4566899999999 899999999999999875554433 2589999999999999999999999999999999999
Q ss_pred ecCCC
Q 026341 136 LKDDS 140 (240)
Q Consensus 136 ~~~~~ 140 (240)
+++..
T Consensus 90 ~~~~~ 94 (102)
T 2fc8_A 90 KPKGE 94 (102)
T ss_dssp CCCCS
T ss_pred cCCCC
Confidence 87654
No 119
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.1e-16 Score=111.04 Aligned_cols=77 Identities=26% Similarity=0.440 Sum_probs=70.4
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecC
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 138 (240)
...+.++|||+|| .+++++|+++|.+||.|..|.|. ++||||+|.+.++|++||..|||..|.|+.|.|.|+.+.
T Consensus 11 ~~~~~~~l~V~n~---~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 11 APRKGNTLYVYGE---DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCCCSEEEEECS---SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCCCEEEEcCC---CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 3456789999997 69999999999999999999985 799999999999999999999999999999999999876
Q ss_pred CC
Q 026341 139 DS 140 (240)
Q Consensus 139 ~~ 140 (240)
..
T Consensus 88 ~~ 89 (97)
T 1x5p_A 88 PM 89 (97)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 120
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.71 E-value=9.6e-17 Score=116.49 Aligned_cols=79 Identities=20% Similarity=0.302 Sum_probs=72.9
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 133 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 133 (240)
...+.++|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|++|+..|||..|.|+.|.|+
T Consensus 31 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESC-CSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4566789999999 8999999999999999999999984 6899999999999999999999999999999999
Q ss_pred EeecCCC
Q 026341 134 YALKDDS 140 (240)
Q Consensus 134 ~a~~~~~ 140 (240)
+|.....
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9987553
No 121
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.3e-17 Score=114.91 Aligned_cols=78 Identities=22% Similarity=0.343 Sum_probs=70.7
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeE-EEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcE--
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL-HVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRV-- 129 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~-~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 129 (240)
...+.++|||+|| |..+++++|+++|.+||.|. .|.|. +|||||+|.+.++|++|++.|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 5 SSGMAASLWMGDL-EPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CCSSSSEEEECSC-CTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCCccEEEEeCC-CCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 3456899999999 88999999999999999999 98884 479999999999999999999999999999
Q ss_pred --EEEEEeecCC
Q 026341 130 --ISVEYALKDD 139 (240)
Q Consensus 130 --l~v~~a~~~~ 139 (240)
|.|+|+.+..
T Consensus 84 ~~l~v~~a~~~~ 95 (99)
T 2div_A 84 KRFKLNYATYSG 95 (99)
T ss_dssp EECCEEETTCCS
T ss_pred eeEEEeecCCCC
Confidence 9999987653
No 122
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.71 E-value=3.2e-17 Score=115.57 Aligned_cols=76 Identities=17% Similarity=0.275 Sum_probs=69.7
Q ss_pred CCCCCEEEEeccCCCCC------CHHHHHHhhccCCCeEEEEEe------CCeEEEEecCHHHHHHHHHhcCCCcccCc-
Q 026341 62 QRPTKTLFVINFDPIRT------RERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDR- 128 (240)
Q Consensus 62 ~~~~~~l~v~nl~~~~~------~~~~l~~~f~~~G~i~~~~~~------kg~afV~f~~~~~a~~A~~~l~g~~~~g~- 128 (240)
....++|||+|| |+.+ ++++|+++|++||.|..|.|+ +|||||+|.+.++|++||..|||..|.|+
T Consensus 12 ~~~~~~l~V~nL-p~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 12 DGIDSVIVVDNV-PQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CSCCSEEEEESC-CCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCEEEEeCC-CcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 345789999999 8888 789999999999999999985 68999999999999999999999999998
Q ss_pred EEEEEEeecC
Q 026341 129 VISVEYALKD 138 (240)
Q Consensus 129 ~l~v~~a~~~ 138 (240)
.|.|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999998754
No 123
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.2e-17 Score=114.81 Aligned_cols=77 Identities=19% Similarity=0.213 Sum_probs=68.6
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~--------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
.....++|||+|| |..+++++|+++|.+||.|..+.+ .+|||||+|.+.++|++||+.|||..|.|+.|.|
T Consensus 11 ~~~~~~~l~v~nL-p~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 11 GKPGPTIIKVQNM-PFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp CCCSSEEEEEESC-CTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3455789999999 999999999999999999875544 2689999999999999999999999999999999
Q ss_pred EEeecC
Q 026341 133 EYALKD 138 (240)
Q Consensus 133 ~~a~~~ 138 (240)
+++...
T Consensus 90 ~~a~~~ 95 (98)
T 2cqp_A 90 VLGSGP 95 (98)
T ss_dssp EESSCS
T ss_pred EEcCCC
Confidence 998754
No 124
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.5e-17 Score=110.34 Aligned_cols=76 Identities=22% Similarity=0.389 Sum_probs=67.5
Q ss_pred CCCCCE-EEEeccCCCCCCHHH----HHHhhccCC-CeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEe
Q 026341 62 QRPTKT-LFVINFDPIRTRERD----IKRHFEPYG-NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135 (240)
Q Consensus 62 ~~~~~~-l~v~nl~~~~~~~~~----l~~~f~~~G-~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 135 (240)
.+|+.+ |||+|| |+.+++++ |.++|.+|| +|..| ..|+|||+|.+.++|++|++.|||..|.|++|.|+||
T Consensus 5 ~~p~~T~lYV~NL-~~~~~~~~lk~~L~~lF~~yGG~Vl~V--tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 5 SSGCHTLLYVYNL-PANKDGKSVSNRLRRLSDNCGGKVLSI--TGCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp CCCSSEEEEEESC-CTTSCHHHHHHHHHHHHHTTTCCEEEC--CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred CCCcceEEEEeCC-CCcCCHHHHHHHHHHHHHHcCCeeEEE--ecCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 345666 999999 99999888 558999995 99888 4599999999999999999999999999999999999
Q ss_pred ecCCC
Q 026341 136 LKDDS 140 (240)
Q Consensus 136 ~~~~~ 140 (240)
+....
T Consensus 82 ~~~sd 86 (96)
T 2diu_A 82 PKNRE 86 (96)
T ss_dssp CCSCC
T ss_pred CCCcc
Confidence 87654
No 125
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.70 E-value=5.9e-18 Score=115.97 Aligned_cols=74 Identities=18% Similarity=0.307 Sum_probs=63.1
Q ss_pred CEEEEeccCCCCCCHHHHHHhhccCC--CeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEe
Q 026341 66 KTLFVINFDPIRTRERDIKRHFEPYG--NVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135 (240)
Q Consensus 66 ~~l~v~nl~~~~~~~~~l~~~f~~~G--~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 135 (240)
.+|||+|| |+.+++++|+++|++|| .|..+.+. +|||||+|.+.++|++||+.|||..|+|+.|.|.++
T Consensus 2 ~~l~V~nL-~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNL-TWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESC-CTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCC-CCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 47999999 89999999999999999 99998873 579999999999999999999999999999999999
Q ss_pred ecCCC
Q 026341 136 LKDDS 140 (240)
Q Consensus 136 ~~~~~ 140 (240)
.+...
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 87643
No 126
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.9e-17 Score=114.69 Aligned_cols=73 Identities=26% Similarity=0.448 Sum_probs=68.2
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEe
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 135 (240)
.+..+|||+|| |..+++++|+++|++||+|..|.|+ +|||||+|.+.++|++||. +++..|+|+.|.|.++
T Consensus 9 ~~~~~lfV~~L-p~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGF-PTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECC-CTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 44689999999 8999999999999999999999995 6899999999999999999 8999999999999998
Q ss_pred ec
Q 026341 136 LK 137 (240)
Q Consensus 136 ~~ 137 (240)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 65
No 127
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.70 E-value=7.2e-17 Score=115.54 Aligned_cols=77 Identities=21% Similarity=0.411 Sum_probs=71.4
Q ss_pred CCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe-----CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEee
Q 026341 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-----RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136 (240)
Q Consensus 62 ~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~-----kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 136 (240)
..+.++|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|++|+..|||..|+|+.|.|.|+.
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 5 PEVNRILYIRNL-PYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TTCCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 346789999999 8999999999999999999999984 5899999999999999999999999999999999998
Q ss_pred cCC
Q 026341 137 KDD 139 (240)
Q Consensus 137 ~~~ 139 (240)
+..
T Consensus 84 ~~~ 86 (115)
T 3lqv_A 84 ANR 86 (115)
T ss_dssp HHH
T ss_pred CCh
Confidence 643
No 128
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-17 Score=117.60 Aligned_cols=76 Identities=25% Similarity=0.506 Sum_probs=70.4
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEE
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 134 (240)
.+.++|||+|| |..+++++|+++|++||.|..|.+. +|||||+|.+.++|++|++.|||..|.|+.|.|.+
T Consensus 6 ~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 6 RSLRSVFVGNI-PYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHSCEEEESC-CTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCccEEEEeCC-CCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 34689999999 8999999999999999999999884 68999999999999999999999999999999999
Q ss_pred eecCC
Q 026341 135 ALKDD 139 (240)
Q Consensus 135 a~~~~ 139 (240)
+.+..
T Consensus 85 a~~~~ 89 (104)
T 1p1t_A 85 AASEK 89 (104)
T ss_dssp TTCTT
T ss_pred CCCcc
Confidence 98654
No 129
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.70 E-value=7.1e-17 Score=117.22 Aligned_cols=75 Identities=19% Similarity=0.309 Sum_probs=68.5
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe---CCe-EEEEecCHHHHHHHHHhcCCCcccC--cEEEEEEeec
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---RNF-AFVQFETQEEATKALESTDRSKLVD--RVISVEYALK 137 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~---kg~-afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~ 137 (240)
+...|||+|| ++.+++++|.++|++||+|..|.+. +++ |||+|.+.++|+.|++.|||..|.| +.|.|+|++.
T Consensus 27 ~VL~I~V~NL-~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 27 PVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp SEEEEEEESC-CSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred ceEEEEECCC-CCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 4566789999 8999999999999999999999884 567 9999999999999999999999998 9999999987
Q ss_pred CC
Q 026341 138 DD 139 (240)
Q Consensus 138 ~~ 139 (240)
..
T Consensus 106 ~~ 107 (130)
T 3zzy_A 106 TS 107 (130)
T ss_dssp SS
T ss_pred Cc
Confidence 54
No 130
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7e-17 Score=114.48 Aligned_cols=78 Identities=26% Similarity=0.360 Sum_probs=71.0
Q ss_pred CCCCCEEEEeccCCCCCCHHHHHHhhccCCC-eEEEEEe---------CCeEEEEecCHHHHHHHHHhcC--CCcccCcE
Q 026341 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGN-VLHVRIR---------RNFAFVQFETQEEATKALESTD--RSKLVDRV 129 (240)
Q Consensus 62 ~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~-i~~~~~~---------kg~afV~f~~~~~a~~A~~~l~--g~~~~g~~ 129 (240)
..+.++|||+|| |..+++++|+++|.+||. |..|.+. +|||||+|.+.++|+.|+..|| +..|.|+.
T Consensus 5 s~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 5 SSGNCRLFIGGI-PKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp CCCSEEEEEECC-CTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred ccCCCEEEEeCC-CCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 345789999999 899999999999999998 9999885 5899999999999999999996 58999999
Q ss_pred EEEEEeecCCC
Q 026341 130 ISVEYALKDDS 140 (240)
Q Consensus 130 l~v~~a~~~~~ 140 (240)
|.|+|+.+...
T Consensus 84 l~V~~a~~~~~ 94 (109)
T 2dis_A 84 IAVDWAEPEID 94 (109)
T ss_dssp CEEEESCSSCS
T ss_pred EEEEEcCCCCC
Confidence 99999987654
No 131
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.1e-17 Score=115.57 Aligned_cols=78 Identities=24% Similarity=0.339 Sum_probs=71.5
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
...+.++|||+|| |..+++++|+++|.+||+|..|.|. +|||||+|.+.++|++||.. |+..|+|+.|.|
T Consensus 12 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 12 GADEIGKLFVGGL-DWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CSSSSSEECCBSC-CTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 4566899999999 8999999999999999999999984 47999999999999999998 999999999999
Q ss_pred EEeecCCC
Q 026341 133 EYALKDDS 140 (240)
Q Consensus 133 ~~a~~~~~ 140 (240)
.++.++..
T Consensus 90 ~~a~~~~~ 97 (105)
T 2dh8_A 90 KPCTPRGM 97 (105)
T ss_dssp CCSCCSSC
T ss_pred EEccCCCC
Confidence 99987654
No 132
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=109.47 Aligned_cols=75 Identities=23% Similarity=0.378 Sum_probs=69.1
Q ss_pred CCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEE
Q 026341 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134 (240)
Q Consensus 62 ~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 134 (240)
.....+|||+|| |+.+++++|+++|.+| .|..|.|+ +|||||+|.+.++|++||. |||..|.|+.|.|.+
T Consensus 7 ~~~~~~l~v~nL-p~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGA-PFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECC-CSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECC-CCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 445789999999 9999999999999999 89999884 5799999999999999999 999999999999999
Q ss_pred eecCC
Q 026341 135 ALKDD 139 (240)
Q Consensus 135 a~~~~ 139 (240)
+....
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98764
No 133
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.70 E-value=6.7e-17 Score=110.26 Aligned_cols=72 Identities=25% Similarity=0.439 Sum_probs=67.5
Q ss_pred CCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEee
Q 026341 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136 (240)
Q Consensus 65 ~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 136 (240)
.++|||+|| |..+++++|+++|++||.|..+.+. +|||||+|.+.++|++|+ .|||..|.|+.|.|++++
T Consensus 6 ~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNV-DYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESC-CTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 578999999 8999999999999999999999884 679999999999999999 899999999999999987
Q ss_pred cC
Q 026341 137 KD 138 (240)
Q Consensus 137 ~~ 138 (240)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 134
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=6.1e-17 Score=112.14 Aligned_cols=78 Identities=23% Similarity=0.408 Sum_probs=70.1
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE---eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeec
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 137 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~---~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 137 (240)
...+.++|||+|| |..+++++|+++|.+||.|..+.. .+|||||+|.+.++|++|+..|||..|.|+.|.|+++.+
T Consensus 12 ~~~~~~~l~V~nL-~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 12 KVRAARTLLAKNL-SFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp TTTGGGEEEEESC-CSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 3456899999999 899999999999999998887722 468999999999999999999999999999999999977
Q ss_pred CC
Q 026341 138 DD 139 (240)
Q Consensus 138 ~~ 139 (240)
..
T Consensus 91 ~~ 92 (96)
T 1fjc_A 91 KG 92 (96)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 135
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.69 E-value=9.6e-17 Score=115.99 Aligned_cols=76 Identities=26% Similarity=0.451 Sum_probs=70.1
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecC
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 138 (240)
...+.++|||+|| .+++++|+++|++||.|..|.|. +|||||+|.+.++|++||..|||..|.|+.|.|.|+.+.
T Consensus 35 ~~~~~~~lfVgnl---~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 35 APRKGNTLYVYGE---DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCCCEEEEECS---SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCCCEEEEcCC---CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 3456899999997 59999999999999999999986 799999999999999999999999999999999999876
Q ss_pred C
Q 026341 139 D 139 (240)
Q Consensus 139 ~ 139 (240)
.
T Consensus 112 ~ 112 (121)
T 2bz2_A 112 P 112 (121)
T ss_dssp C
T ss_pred C
Confidence 4
No 136
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.69 E-value=7.7e-17 Score=121.34 Aligned_cols=75 Identities=17% Similarity=0.255 Sum_probs=68.7
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe----CCeEEEEecCHHHHHHHHHhcCCCcccC--cEEEEEEeec
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR----RNFAFVQFETQEEATKALESTDRSKLVD--RVISVEYALK 137 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~----kg~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~ 137 (240)
....|||+|| ++.+++++|+++|++||+|..|.|. ++||||+|.+.++|++|++.|||..|.| +.|.|+|++.
T Consensus 45 ~vl~l~VgNL-~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 45 PVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp CEEEEEECSC-CSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred ceEEEEEeCc-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 3567899999 8999999999999999999999984 4699999999999999999999999966 9999999987
Q ss_pred CC
Q 026341 138 DD 139 (240)
Q Consensus 138 ~~ 139 (240)
..
T Consensus 124 ~~ 125 (164)
T 1sjr_A 124 TS 125 (164)
T ss_dssp SS
T ss_pred Cc
Confidence 64
No 137
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.69 E-value=1.9e-17 Score=114.47 Aligned_cols=74 Identities=20% Similarity=0.215 Sum_probs=65.5
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEE
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~--------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 134 (240)
++.++|||+|| |+.+++++|+++|.+||.|..+.+ .++||||+|.+.++|++||+.||+..|.|+.|.|++
T Consensus 13 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 13 PGPTVIKVQNM-PFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp --CEEEEEECC-CTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 45689999999 999999999999999999876555 258999999999999999999999999999999998
Q ss_pred eec
Q 026341 135 ALK 137 (240)
Q Consensus 135 a~~ 137 (240)
+..
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 753
No 138
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=114.81 Aligned_cols=76 Identities=21% Similarity=0.438 Sum_probs=69.8
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEE
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 134 (240)
.+.++|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|++||.. ++..|+|+.|.|.+
T Consensus 25 ~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 25 EQFRKLFIGGL-SFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHTEEEEECC-TTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34689999999 8999999999999999999999984 57999999999999999997 99999999999999
Q ss_pred eecCCC
Q 026341 135 ALKDDS 140 (240)
Q Consensus 135 a~~~~~ 140 (240)
+.++..
T Consensus 103 a~~~~~ 108 (116)
T 1x4b_A 103 AVAREE 108 (116)
T ss_dssp CSSCCC
T ss_pred CCCCcc
Confidence 987654
No 139
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.69 E-value=1.3e-16 Score=108.37 Aligned_cols=73 Identities=29% Similarity=0.530 Sum_probs=66.4
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
...+.++|||+|| |..+++++|+++|++||.|..|.+. +|||||+|.+.++|++|++ +++..|+|+.|.|
T Consensus 7 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 7 NEEDAGKMFVGGL-SWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp CCSCTTEEEEECC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 3456889999999 8999999999999999999999984 5799999999999999996 5888999999999
Q ss_pred EEe
Q 026341 133 EYA 135 (240)
Q Consensus 133 ~~a 135 (240)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 886
No 140
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.69 E-value=7.5e-17 Score=121.68 Aligned_cols=74 Identities=18% Similarity=0.286 Sum_probs=67.9
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCC--CeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEE
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYG--NVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 133 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G--~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 133 (240)
...+|||+|| |+.+++++|+++|.+|| .|..|.|. +|||||+|.+.++|++||..|||..|+|+.|.|.
T Consensus 54 ~~~~lfVgnL-p~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSF-SWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECC-CTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 4579999999 99999999999999999 99999984 5799999999999999999999999999999999
Q ss_pred EeecC
Q 026341 134 YALKD 138 (240)
Q Consensus 134 ~a~~~ 138 (240)
++.+.
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 99753
No 141
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.9e-17 Score=116.25 Aligned_cols=74 Identities=26% Similarity=0.449 Sum_probs=68.9
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEe
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 135 (240)
..++|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|++|| .|||..|.|+.|.|+++
T Consensus 24 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 24 DARTVFCMQL-AARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHTEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 4579999999 8999999999999999999999984 589999999999999999 99999999999999999
Q ss_pred ecCC
Q 026341 136 LKDD 139 (240)
Q Consensus 136 ~~~~ 139 (240)
....
T Consensus 102 ~~~~ 105 (114)
T 2cq4_A 102 QAEK 105 (114)
T ss_dssp HHHH
T ss_pred CCCc
Confidence 7643
No 142
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.8e-16 Score=111.11 Aligned_cols=76 Identities=24% Similarity=0.385 Sum_probs=67.4
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 133 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 133 (240)
...+..+|||+|| |+.+++++|+++|.+||.| .|.|+ +|||||+|.+.++|++||+ +|+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGL-PYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESC-CTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 4456789999999 9999999999999999954 77773 6799999999999999995 79999999999999
Q ss_pred EeecCC
Q 026341 134 YALKDD 139 (240)
Q Consensus 134 ~a~~~~ 139 (240)
++....
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 987654
No 143
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.8e-17 Score=112.17 Aligned_cols=72 Identities=18% Similarity=0.405 Sum_probs=66.3
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEE
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 134 (240)
.+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++|++.|||..|.|+.|+|.+
T Consensus 3 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGL-QPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESC-CTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 46789999999 8999999999999999999999984 68999999999999999999999999999887765
Q ss_pred e
Q 026341 135 A 135 (240)
Q Consensus 135 a 135 (240)
+
T Consensus 82 ~ 82 (85)
T 1x4e_A 82 P 82 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 144
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.3e-16 Score=109.87 Aligned_cols=77 Identities=29% Similarity=0.528 Sum_probs=69.1
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
...+.++|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|++||. ++..|+|+.|.|
T Consensus 11 ~~~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 11 AVQKTSDLIVLGL-PWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCEEEESC-CSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred ccCCCCEEEEEcC-CCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 4456789999999 8999999999999999999999884 4699999999999999998 467899999999
Q ss_pred EEeecCCC
Q 026341 133 EYALKDDS 140 (240)
Q Consensus 133 ~~a~~~~~ 140 (240)
.++.++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqg_A 88 KLPNSKQS 95 (103)
T ss_dssp ECCCTTCC
T ss_pred EecCCCCc
Confidence 99987654
No 145
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.68 E-value=1.5e-16 Score=115.45 Aligned_cols=74 Identities=19% Similarity=0.407 Sum_probs=68.5
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEe
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 135 (240)
+.++|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|++|| .|||..|+|+.|.|+++
T Consensus 35 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 35 DKRSVYVGNV-DYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHTEEEEEEE-CTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 3689999999 8999999999999999999999884 579999999999999999 79999999999999998
Q ss_pred ecCC
Q 026341 136 LKDD 139 (240)
Q Consensus 136 ~~~~ 139 (240)
+...
T Consensus 113 ~~~~ 116 (124)
T 2jwn_A 113 RTNM 116 (124)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7643
No 146
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.68 E-value=1.9e-16 Score=112.40 Aligned_cols=78 Identities=22% Similarity=0.377 Sum_probs=67.5
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
...+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||..+ +..|+|+.|.|
T Consensus 21 ~~~~~~~lfV~nL-p~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 21 MGSSGCKMFIGGL-SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp -----CCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 3456789999999 8999999999999999999999984 589999999999999999976 59999999999
Q ss_pred EEeecCCC
Q 026341 133 EYALKDDS 140 (240)
Q Consensus 133 ~~a~~~~~ 140 (240)
.++.+...
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99987653
No 147
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4e-16 Score=111.47 Aligned_cols=77 Identities=17% Similarity=0.445 Sum_probs=69.8
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcc--------
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKL-------- 125 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~-------- 125 (240)
...+.++|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|++||..|||..|
T Consensus 21 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNL-PLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESC-CTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 3456789999999 8899999999999999999999984 57999999999999999999999999
Q ss_pred cCcEEEEEEeecC
Q 026341 126 VDRVISVEYALKD 138 (240)
Q Consensus 126 ~g~~l~v~~a~~~ 138 (240)
.+++|.|.|+.+.
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999999854
No 148
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.68 E-value=5.8e-17 Score=119.30 Aligned_cols=115 Identities=12% Similarity=0.124 Sum_probs=69.2
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHHHHhh
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHF 87 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~f 87 (240)
+|++|.+|..++.+-.....+..+. +|... ... ...........++|||+|| |+.+|+++|+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~---gg~~~--g~g---------~~~~~~~~~~~~~lfVgnL-p~~~te~dL~~~F 65 (136)
T 2hgl_A 1 MGSSHHHHHHSSGLVPRGSHMASMT---GGQQM--GRG---------SMMLGPEGGEGFVVKLRGL-PWSCSVEDVQNFL 65 (136)
T ss_dssp ------------------------------------------------CCSCSSCCTTCEEEEESC-CTTCCHHHHHHHT
T ss_pred CccccccccchHHHHhhccCCCccc---CCCCC--CCC---------CCCCCCCCCCCCEEEEeCC-CCCCCHHHHHHHH
Confidence 4788888888877665555433332 12110 000 0001123345789999999 9999999999999
Q ss_pred ccCCC---eEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecC
Q 026341 88 EPYGN---VLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138 (240)
Q Consensus 88 ~~~G~---i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 138 (240)
++||. |..|.|. +|||||+|.+.++|++||+ ||+..|+|+.|.|.++...
T Consensus 66 ~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 66 SDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHRT 125 (136)
T ss_dssp TTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCHH
T ss_pred HHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECChH
Confidence 99998 7788774 6899999999999999999 9999999999999998653
No 149
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.8e-16 Score=110.53 Aligned_cols=76 Identities=22% Similarity=0.312 Sum_probs=68.7
Q ss_pred CCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEE-EEE-------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEE
Q 026341 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH-VRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 133 (240)
Q Consensus 62 ~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~-~~~-------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 133 (240)
....++|||+|| |+.+++++|+++|.+||.|.. |.| .+|||||+|.+.++|++||.. |+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGL-PFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESC-CTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 345789999999 999999999999999999987 766 378999999999999999997 9999999999999
Q ss_pred EeecCC
Q 026341 134 YALKDD 139 (240)
Q Consensus 134 ~a~~~~ 139 (240)
++....
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 987654
No 150
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.68 E-value=9.7e-17 Score=109.37 Aligned_cols=73 Identities=16% Similarity=0.297 Sum_probs=68.1
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE--eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecC
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~--~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 138 (240)
..++|||+|| |..+++++|+++|.+| .|..+.+ .+|||||+|.+.++|++|++.|||..|.|+.|.|+++...
T Consensus 4 ~~~~l~V~nL-p~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNL-PQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESC-CSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 4688999999 8999999999999999 9998887 4799999999999999999999999999999999998654
No 151
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.68 E-value=5.9e-17 Score=113.16 Aligned_cols=76 Identities=29% Similarity=0.458 Sum_probs=66.7
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe---------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---------RNFAFVQFETQEEATKALESTDRSKLVDRVIS 131 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~---------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 131 (240)
.....++|||+|| |..+++++|+++|++|| |..|.|. +|||||+|.+.++|++|| .|||..|+|+.|.
T Consensus 15 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 15 PKSPPYTAFLGNL-PYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp -----CEEEESCC-SSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 4456899999999 89999999999999999 9999983 579999999999999999 8999999999999
Q ss_pred EEEeecCC
Q 026341 132 VEYALKDD 139 (240)
Q Consensus 132 v~~a~~~~ 139 (240)
|+++.+..
T Consensus 92 V~~a~~~~ 99 (100)
T 2j76_E 92 VDVADQAQ 99 (100)
T ss_dssp CEECCCSC
T ss_pred EEeccCCC
Confidence 99997653
No 152
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.67 E-value=6.7e-17 Score=108.43 Aligned_cols=66 Identities=20% Similarity=0.364 Sum_probs=61.6
Q ss_pred CEEEEeccCCCCC------CHHHHHHhhccCCCeEEEEEe------CCeEEEEecCHHHHHHHHHhcCCCcccCc-EEEE
Q 026341 66 KTLFVINFDPIRT------RERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDR-VISV 132 (240)
Q Consensus 66 ~~l~v~nl~~~~~------~~~~l~~~f~~~G~i~~~~~~------kg~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~v 132 (240)
++|||+|| |..+ ++++|+++|++||.|..|.|+ +|||||+|.+.++|++|+..|||..|+|+ +|.|
T Consensus 2 ~~l~V~nL-p~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNV-PQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESC-CCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCC-CCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 68999999 8888 679999999999999999985 69999999999999999999999999999 8866
No 153
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=117.32 Aligned_cols=77 Identities=26% Similarity=0.421 Sum_probs=70.0
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEE--EEE--------eCCeEEEEecCHHHHHHHHHhcCCC----ccc
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH--VRI--------RRNFAFVQFETQEEATKALESTDRS----KLV 126 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~--~~~--------~kg~afV~f~~~~~a~~A~~~l~g~----~~~ 126 (240)
...+.++|||+|| |+.+++++|+++|.+||.|.. |.| .+|||||+|.+. +|++||..|||. .|+
T Consensus 19 ~~~~~~~lfV~nL-~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 19 SENANDTIILRNL-NPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CSCCCCEEEECSC-CTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 4466889999999 999999999999999999966 777 369999999999 999999999999 999
Q ss_pred CcEEEEEEeecCC
Q 026341 127 DRVISVEYALKDD 139 (240)
Q Consensus 127 g~~l~v~~a~~~~ 139 (240)
|+.|.|+++.+..
T Consensus 97 gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 97 GKTINVEFAKGSK 109 (131)
T ss_dssp GCCCCCEECCCSC
T ss_pred CEEEEEEECCCCC
Confidence 9999999998754
No 154
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.67 E-value=2.6e-16 Score=116.36 Aligned_cols=75 Identities=29% Similarity=0.580 Sum_probs=69.0
Q ss_pred CCCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEE
Q 026341 60 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVIS 131 (240)
Q Consensus 60 ~~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 131 (240)
....+..+|||+|| |..+++++|+++|.+||.|..+.|+ +|||||+|.+.++|++|++.|||..|.|+.|.
T Consensus 58 ~~~~~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 58 GSATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp SSCSSCCEEEEECC-CTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCcEEEEEeC-CCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34567899999999 8899999999999999999999983 68999999999999999999999999999999
Q ss_pred EEEe
Q 026341 132 VEYA 135 (240)
Q Consensus 132 v~~a 135 (240)
|++|
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9986
No 155
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.5e-16 Score=108.26 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=69.1
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEE-Ee----CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeec
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVR-IR----RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 137 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~-~~----kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 137 (240)
...++|||+|| |+.+++++|+++|.+||.|..|. |+ .+.|||+|.+.++|++|+..|||..|.|+.|.|+++.+
T Consensus 13 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNI-PPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEE-CSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 34789999999 89999999999999999999994 64 34599999999999999999999999999999999987
Q ss_pred CC
Q 026341 138 DD 139 (240)
Q Consensus 138 ~~ 139 (240)
++
T Consensus 92 ~~ 93 (96)
T 2e44_A 92 EM 93 (96)
T ss_dssp CC
T ss_pred cc
Confidence 63
No 156
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=4.3e-16 Score=107.46 Aligned_cols=75 Identities=19% Similarity=0.319 Sum_probs=66.7
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEeC--C-eEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCC
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR--N-FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 139 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~k--g-~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 139 (240)
....+|||+|| |+.+++++|+++|.+||.|..|.+.+ + ||||+|.+.++|++||. |||..|+|+.|.|+++....
T Consensus 6 ~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 6 SGLRSVFVSGF-PRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp TTCCEEEEECC-CTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 34679999999 89999999999999999999984432 1 99999999999999999 99999999999999886544
No 157
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.67 E-value=7.2e-17 Score=106.56 Aligned_cols=67 Identities=27% Similarity=0.494 Sum_probs=62.7
Q ss_pred EEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEe
Q 026341 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135 (240)
Q Consensus 67 ~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 135 (240)
+|||+|| |..+++++|+++|++||+|..|.++ +|||||+|.+.++|++|++ ||+..|+|+.|.|++|
T Consensus 1 ~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGL-SVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECC-CSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 4899999 8999999999999999999999883 5899999999999999998 9999999999999875
No 158
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.7e-16 Score=113.53 Aligned_cols=77 Identities=22% Similarity=0.243 Sum_probs=69.6
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCe-EEEEE-------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNV-LHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i-~~~~~-------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
...+..+|||+|| |+.+++++|+++|.+||.| ..|.| .+|||||+|.+.++|++||.. |+..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNI-PFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESC-CTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCc-CCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 3456789999999 9999999999999999999 77777 379999999999999999987 999999999999
Q ss_pred EEeecCC
Q 026341 133 EYALKDD 139 (240)
Q Consensus 133 ~~a~~~~ 139 (240)
.++....
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9998654
No 159
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.1e-16 Score=116.17 Aligned_cols=76 Identities=17% Similarity=0.275 Sum_probs=67.4
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEE-EE-------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV-RI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~-~~-------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
......+|||+|| |+.+++++|+++|..||.|..+ .+ .+|||||+|.+.++|++||. ||+..|+|+.|.|
T Consensus 21 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 21 PHEAGFCVYLKGL-PFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp CCCCCCEEEEECC-CTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 3455789999999 9999999999999999998652 33 36899999999999999999 9999999999999
Q ss_pred EEeecC
Q 026341 133 EYALKD 138 (240)
Q Consensus 133 ~~a~~~ 138 (240)
.++..+
T Consensus 99 ~~a~~~ 104 (124)
T 1wel_A 99 HPITKK 104 (124)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 999754
No 160
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.66 E-value=2.9e-16 Score=120.94 Aligned_cols=77 Identities=21% Similarity=0.324 Sum_probs=71.4
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 133 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 133 (240)
...+.++|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|++||+.|||..|+|+.|.|+
T Consensus 84 ~~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECC-CSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4456789999999 8999999999999999999999984 5899999999999999999999999999999999
Q ss_pred EeecC
Q 026341 134 YALKD 138 (240)
Q Consensus 134 ~a~~~ 138 (240)
||...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 99764
No 161
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=6.9e-17 Score=112.94 Aligned_cols=77 Identities=23% Similarity=0.304 Sum_probs=67.4
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE-------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 133 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~-------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 133 (240)
...+..+|||+|| |..+++++|+++|.+||.|..+.+ .+|||||+|.+.++|++||+ |||..|.|+.|.|.
T Consensus 13 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNL-NPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECC-CTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3446789999999 899999999999999997755211 37999999999999999999 99999999999999
Q ss_pred EeecCC
Q 026341 134 YALKDD 139 (240)
Q Consensus 134 ~a~~~~ 139 (240)
++.+..
T Consensus 91 ~a~~~~ 96 (101)
T 1fj7_A 91 KPKGRD 96 (101)
T ss_dssp CCSCCC
T ss_pred EcCCCC
Confidence 998754
No 162
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.66 E-value=1.7e-16 Score=114.23 Aligned_cols=75 Identities=20% Similarity=0.245 Sum_probs=68.4
Q ss_pred CCCCCEEEEeccCCCCCCHHHHHHhhccCCC---eEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEE
Q 026341 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGN---VLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVIS 131 (240)
Q Consensus 62 ~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~---i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 131 (240)
....++|||+|| |+.+++++|+++|..||. |..|.|. +|||||+|.+.++|++||+ ||+..|+|+.|.
T Consensus 14 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGL-PWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESC-CTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345789999999 999999999999999998 7888874 6899999999999999999 999999999999
Q ss_pred EEEeecC
Q 026341 132 VEYALKD 138 (240)
Q Consensus 132 v~~a~~~ 138 (240)
|.++...
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998654
No 163
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=117.73 Aligned_cols=79 Identities=23% Similarity=0.409 Sum_probs=69.8
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEE--------EEE-----eCCeEEEEecCHHHHHHHHHhcCCCcccC
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH--------VRI-----RRNFAFVQFETQEEATKALESTDRSKLVD 127 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~--------~~~-----~kg~afV~f~~~~~a~~A~~~l~g~~~~g 127 (240)
...+.++|||+|| |+.+++++|+++|.+||.|.. +.+ .+|||||+|.+.++|++||..|||..|.|
T Consensus 41 ~~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 41 PGEPNCRIYVKNL-AKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp CCSCCSEEEEEEE-CTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 3456899999999 899999999999999998865 333 26899999999999999999999999999
Q ss_pred cEEEEEEeecCCC
Q 026341 128 RVISVEYALKDDS 140 (240)
Q Consensus 128 ~~l~v~~a~~~~~ 140 (240)
+.|.|.+++....
T Consensus 120 ~~l~V~~a~~~~~ 132 (143)
T 3egn_A 120 KPMVVQFARSARP 132 (143)
T ss_dssp EECEEEECCCSCC
T ss_pred cEEEEEECCCCCC
Confidence 9999999986543
No 164
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.66 E-value=4.3e-16 Score=122.78 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=70.7
Q ss_pred CCCCEEEEeccCC-CCCCHHHHHHhhccCCCeEEEEEe---CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecC
Q 026341 63 RPTKTLFVINFDP-IRTRERDIKRHFEPYGNVLHVRIR---RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138 (240)
Q Consensus 63 ~~~~~l~v~nl~~-~~~~~~~l~~~f~~~G~i~~~~~~---kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 138 (240)
.++++|||+|| + +.+++++|+++|++||.|..|.|. +|||||+|.+.++|+.||+.|||..|.|+.|.|.+++..
T Consensus 2 ~~~~~l~V~nL-~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 2 ADSPVLMVYGL-DQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CCCSEEEEECC-CTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCCCEEEEeCC-CcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 45789999999 6 899999999999999999999985 699999999999999999999999999999999999754
Q ss_pred C
Q 026341 139 D 139 (240)
Q Consensus 139 ~ 139 (240)
.
T Consensus 81 ~ 81 (205)
T 3tyt_A 81 A 81 (205)
T ss_dssp C
T ss_pred c
Confidence 3
No 165
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.65 E-value=5.8e-17 Score=110.89 Aligned_cols=72 Identities=22% Similarity=0.494 Sum_probs=65.0
Q ss_pred CEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeec
Q 026341 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 137 (240)
Q Consensus 66 ~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 137 (240)
++|||+|| |..+++++|+++|++||.|..|.+. +|||||+|.+.+ |++|+..|||..|+|+.|.|++|.+
T Consensus 2 ~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNL-VYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEE-CTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCC-CCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 57999999 8899999999999999999999984 679999999999 9999999999999999999999987
Q ss_pred CC
Q 026341 138 DD 139 (240)
Q Consensus 138 ~~ 139 (240)
..
T Consensus 80 ~~ 81 (90)
T 2ki2_A 80 KK 81 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 166
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.1e-16 Score=106.07 Aligned_cols=68 Identities=24% Similarity=0.418 Sum_probs=63.9
Q ss_pred CEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEe
Q 026341 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135 (240)
Q Consensus 66 ~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 135 (240)
++|||+|| |..+++++|+++|++||+|..+.++ +|+|||+|.+.++|++|+..++ ..|+|+.|.|++|
T Consensus 1 ~~l~v~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGL-SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESC-CSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999 8999999999999999999999884 5799999999999999999999 9999999999987
No 167
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=1e-17 Score=120.21 Aligned_cols=78 Identities=18% Similarity=0.281 Sum_probs=70.7
Q ss_pred CCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEE--------EEEe--------CCeEEEEecCHHHHHHHHHhcCCCcc
Q 026341 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH--------VRIR--------RNFAFVQFETQEEATKALESTDRSKL 125 (240)
Q Consensus 62 ~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~--------~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~ 125 (240)
..+.++|||+|| |..+++++|+++|.+||.|.. |.|+ +|||||+|.+.++|++||..|||..|
T Consensus 4 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 4 NSDNNTIFVQGL-GENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 346789999999 899999999999999999988 6663 58999999999999999999999999
Q ss_pred cCcEEEEEEeecCCC
Q 026341 126 VDRVISVEYALKDDS 140 (240)
Q Consensus 126 ~g~~l~v~~a~~~~~ 140 (240)
.|+.|.|+++.+...
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 SGNPIKVSFATRRAD 97 (116)
Confidence 999999999987653
No 168
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.65 E-value=7.9e-16 Score=105.08 Aligned_cols=74 Identities=23% Similarity=0.335 Sum_probs=60.6
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe---CCeEEEEecCHHHHHHHHHhcCCCcc--cCcEEEEEEe
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---RNFAFVQFETQEEATKALESTDRSKL--VDRVISVEYA 135 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~---kg~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a 135 (240)
...+.++|||+|| |+.+++++|+++|++||.|..|.|+ +|||||+|.+.++|++ |++..+ .|+.|.|.+|
T Consensus 7 ~~~~~~~l~V~~L-p~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 7 HHHHGSKVFVGRC-TEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp ----CCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEEC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEc
Confidence 3456899999999 9999999999999999999999995 7999999999999983 456554 5899999999
Q ss_pred ecCC
Q 026341 136 LKDD 139 (240)
Q Consensus 136 ~~~~ 139 (240)
.++.
T Consensus 82 ~~k~ 85 (89)
T 3d2w_A 82 EPKH 85 (89)
T ss_dssp C---
T ss_pred CCCC
Confidence 8754
No 169
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.5e-16 Score=110.25 Aligned_cols=72 Identities=21% Similarity=0.319 Sum_probs=66.0
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEee
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 136 (240)
...+|||+|| |+.+++++|+++|.+| .|..|.|+ +|||||+|.+.++|++|| .||+..|+|+.|.|..+.
T Consensus 15 ~~~~v~V~nL-p~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGM-PFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECC-CSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3579999999 9999999999999999 89999884 789999999999999999 699999999999998886
Q ss_pred cC
Q 026341 137 KD 138 (240)
Q Consensus 137 ~~ 138 (240)
..
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 53
No 170
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.64 E-value=2.3e-16 Score=126.41 Aligned_cols=74 Identities=18% Similarity=0.310 Sum_probs=67.8
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCC--CeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEE
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYG--NVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 133 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G--~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 133 (240)
..++|||+|| ++.+++++|+++|.+|| .|..|.|+ +|||||+|.+.++|++||+.||+..|+|+.|.|.
T Consensus 67 ~~~~lfVgnL-~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNL-TWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESC-CTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCC-CCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 4678999999 99999999999999999 99999983 5799999999999999999999999999999999
Q ss_pred EeecC
Q 026341 134 YALKD 138 (240)
Q Consensus 134 ~a~~~ 138 (240)
++...
T Consensus 146 ~a~~~ 150 (229)
T 3q2s_C 146 PVNKQ 150 (229)
T ss_dssp ECCHH
T ss_pred ECCCC
Confidence 98753
No 171
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.64 E-value=2.1e-16 Score=111.70 Aligned_cols=76 Identities=17% Similarity=0.196 Sum_probs=68.9
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCC---eEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGN---VLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVI 130 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~---i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l 130 (240)
.....++|||+|| |+.+++++|+++|..||. |..|.|. +|||||+|.+.++|++||. ||+..|+|+.|
T Consensus 7 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGL-PWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECC-CSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCC-CCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3456789999999 999999999999999988 8888884 6899999999999999999 99999999999
Q ss_pred EEEEeecC
Q 026341 131 SVEYALKD 138 (240)
Q Consensus 131 ~v~~a~~~ 138 (240)
.|.++...
T Consensus 85 ~V~~a~~~ 92 (107)
T 2lmi_A 85 EVYEINNE 92 (107)
T ss_dssp CCEECCHH
T ss_pred EEEECCHH
Confidence 99998754
No 172
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.64 E-value=6.7e-16 Score=104.76 Aligned_cols=70 Identities=29% Similarity=0.519 Sum_probs=65.2
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhccC----C-------CeEEEEEe--CCeEEEEecCHHHHHHHHHhcCCCcccCcE
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEPY----G-------NVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLVDRV 129 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~~----G-------~i~~~~~~--kg~afV~f~~~~~a~~A~~~l~g~~~~g~~ 129 (240)
.+.++|||+|| |..+++++|+++|.+| | .|..+.+. +|||||+|.+.++|++|+ .|||..|.|+.
T Consensus 4 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 4 GSARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp GGGGEEEEESC-CTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 35789999999 8999999999999999 8 89999986 799999999999999999 99999999999
Q ss_pred EEEEE
Q 026341 130 ISVEY 134 (240)
Q Consensus 130 l~v~~ 134 (240)
|.|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99863
No 173
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.7e-16 Score=105.50 Aligned_cols=75 Identities=23% Similarity=0.334 Sum_probs=63.5
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe---CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCC
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 139 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~---kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 139 (240)
.+.++|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|++|+.. ...+.|..|.|.++.++.
T Consensus 3 ~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 3 SGSSGVFVGRC-TGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKH 79 (88)
T ss_dssp SCCCEEEEESC-CSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCC
Confidence 35789999999 9999999999999999999999995 79999999999999764321 234589999999988764
Q ss_pred C
Q 026341 140 S 140 (240)
Q Consensus 140 ~ 140 (240)
.
T Consensus 80 ~ 80 (88)
T 1wf0_A 80 N 80 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 174
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.60 E-value=4.3e-16 Score=102.75 Aligned_cols=67 Identities=24% Similarity=0.419 Sum_probs=62.3
Q ss_pred EEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEe
Q 026341 67 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135 (240)
Q Consensus 67 ~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 135 (240)
+|||+|| |..+++++|+++|++||+|..|.++ +|||||+|.+.++|++|++. ++..|.|+.|.|.+|
T Consensus 1 ~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGL-SPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCC-CSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 5899999 8999999999999999999999884 68999999999999999985 899999999999875
No 175
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.59 E-value=1.8e-15 Score=121.07 Aligned_cols=76 Identities=28% Similarity=0.353 Sum_probs=69.1
Q ss_pred CCCCCEEEEeccCCCCC---------CHHHHHHhhccCCCeEEEEEe--CCeEEEEecCHHHHHHHHHhcCCCcc-----
Q 026341 62 QRPTKTLFVINFDPIRT---------RERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKL----- 125 (240)
Q Consensus 62 ~~~~~~l~v~nl~~~~~---------~~~~l~~~f~~~G~i~~~~~~--kg~afV~f~~~~~a~~A~~~l~g~~~----- 125 (240)
.....+|||+|| +..+ ++++|+++|++||+|..|.|. +|||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL-~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 131 RKKNKTLYVGGI-DGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCCEEEEECT-TGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred ccCCceeecCCC-ChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 456899999999 7777 799999999999999999985 79999999999999999999999999
Q ss_pred -------cCcEEEEEEeecC
Q 026341 126 -------VDRVISVEYALKD 138 (240)
Q Consensus 126 -------~g~~l~v~~a~~~ 138 (240)
.|+.|.|.||...
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp TTGGGGGGSCCCEEEECC--
T ss_pred ccccccCCCCEEEEEEccCC
Confidence 8999999999864
No 176
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.59 E-value=3.7e-15 Score=118.08 Aligned_cols=76 Identities=21% Similarity=0.466 Sum_probs=68.6
Q ss_pred CCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEE
Q 026341 62 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 133 (240)
Q Consensus 62 ~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 133 (240)
..|.++|||+|| |..+++++|+++|++||+|..|.|+ +|||||+|.+.++|++||..||+..+.|+.|.|.
T Consensus 12 ~~p~~tlfVgnL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 12 SYPMASLYVGDL-HPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ---CCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 456789999999 8999999999999999999999984 4799999999999999999999999999999999
Q ss_pred EeecC
Q 026341 134 YALKD 138 (240)
Q Consensus 134 ~a~~~ 138 (240)
++...
T Consensus 91 ~~~~~ 95 (213)
T 4f02_A 91 WSQRD 95 (213)
T ss_dssp ECCCC
T ss_pred ccccc
Confidence 98654
No 177
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.59 E-value=6e-15 Score=111.96 Aligned_cols=75 Identities=21% Similarity=0.412 Sum_probs=69.8
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEe
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 135 (240)
+.++|||+|| |..+++++|+++|++||+|..|.+. +|||||+|.+.++|++|++.|+|..|.|+.|.|.++
T Consensus 2 ~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYL-PQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 4789999999 8899999999999999999999883 489999999999999999999999999999999999
Q ss_pred ecCC
Q 026341 136 LKDD 139 (240)
Q Consensus 136 ~~~~ 139 (240)
.+..
T Consensus 81 ~~~~ 84 (168)
T 1b7f_A 81 RPGG 84 (168)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 8654
No 178
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1e-14 Score=103.84 Aligned_cols=78 Identities=17% Similarity=0.215 Sum_probs=68.4
Q ss_pred CCCCCCEEEEeccCCCCCC-----------HHHHHHhhccCCCeEEEEEe----CCeEEEEecCHHHHHHHHHhcCCCcc
Q 026341 61 NQRPTKTLFVINFDPIRTR-----------ERDIKRHFEPYGNVLHVRIR----RNFAFVQFETQEEATKALESTDRSKL 125 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~-----------~~~l~~~f~~~G~i~~~~~~----kg~afV~f~~~~~a~~A~~~l~g~~~ 125 (240)
...+..+|+|.|| ..... +++|+++|.+||.|..|.|. +|||||+|.+.++|++|+..|||..|
T Consensus 11 ~~~~s~~l~l~Nl-~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 11 RMRHERVVIIKNM-FHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCCSCCEEEEESS-CCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCCceEEEEEcC-CCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4567899999999 43322 57999999999999999874 79999999999999999999999999
Q ss_pred cCcEEEEEEeecCC
Q 026341 126 VDRVISVEYALKDD 139 (240)
Q Consensus 126 ~g~~l~v~~a~~~~ 139 (240)
+|++|.|.++.+..
T Consensus 90 ~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 90 GGRQITAQAWDGTT 103 (112)
T ss_dssp TTEECEEEECCSCC
T ss_pred CCcEEEEEEeCCCC
Confidence 99999999997653
No 179
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.58 E-value=3.6e-15 Score=108.08 Aligned_cols=75 Identities=23% Similarity=0.344 Sum_probs=66.0
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeE--EEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL--HVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVIS 131 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~--~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 131 (240)
......+|||+|| |+.+++++|+++|++| .|. .|.|+ +|||||+|.+.++|++||+. ++..|+|+.|.
T Consensus 38 ~~~~~~~lfVgnL-p~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGL-PFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECC-CTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEE
Confidence 3345789999999 9999999999999999 676 78874 79999999999999999984 78999999999
Q ss_pred EEEeecC
Q 026341 132 VEYALKD 138 (240)
Q Consensus 132 v~~a~~~ 138 (240)
|..+..+
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988653
No 180
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.3e-15 Score=110.12 Aligned_cols=74 Identities=18% Similarity=0.189 Sum_probs=65.5
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhccCCCe----EEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEE
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNV----LHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVIS 131 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i----~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 131 (240)
....+|||+|| |+.+++++|+++|++||.| ..|.|+ +|||||+|.+.++|++||+. |+..|.|+.|.
T Consensus 21 ~~~~~v~V~nL-p~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGL-PFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSC-CTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 34689999999 9999999999999999975 466663 68999999999999999986 99999999999
Q ss_pred EEEeecC
Q 026341 132 VEYALKD 138 (240)
Q Consensus 132 v~~a~~~ 138 (240)
|..+...
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988643
No 181
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.58 E-value=1.3e-15 Score=106.51 Aligned_cols=75 Identities=24% Similarity=0.463 Sum_probs=68.2
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEe
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 135 (240)
.+.++|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|++|+. ++..|+|+.|.|.++
T Consensus 7 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGI-DVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 34689999999 8999999999999999999999984 5899999999999999998 999999999999999
Q ss_pred ecCCC
Q 026341 136 LKDDS 140 (240)
Q Consensus 136 ~~~~~ 140 (240)
.....
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 87543
No 182
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.57 E-value=9.3e-15 Score=110.60 Aligned_cols=74 Identities=20% Similarity=0.413 Sum_probs=68.8
Q ss_pred CCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEee
Q 026341 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136 (240)
Q Consensus 65 ~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 136 (240)
.++|||+|| |..+++++|+++|+.||.|..+.+. +|+|||+|.+.++|+.|++.|||..+.|+.|.|.++.
T Consensus 2 ~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYL-PQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 579999999 8899999999999999999999884 3799999999999999999999999999999999987
Q ss_pred cCC
Q 026341 137 KDD 139 (240)
Q Consensus 137 ~~~ 139 (240)
+..
T Consensus 81 ~~~ 83 (167)
T 1fxl_A 81 PSS 83 (167)
T ss_dssp CCC
T ss_pred CCc
Confidence 643
No 183
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.57 E-value=1.1e-14 Score=102.29 Aligned_cols=76 Identities=26% Similarity=0.268 Sum_probs=66.3
Q ss_pred CCCCCEEEEeccCC-C---CCCHHHHHHhhccCCCeEEEEEe---------CCeEEEEecCHHHHHHHHHhcCCCcccCc
Q 026341 62 QRPTKTLFVINFDP-I---RTRERDIKRHFEPYGNVLHVRIR---------RNFAFVQFETQEEATKALESTDRSKLVDR 128 (240)
Q Consensus 62 ~~~~~~l~v~nl~~-~---~~~~~~l~~~f~~~G~i~~~~~~---------kg~afV~f~~~~~a~~A~~~l~g~~~~g~ 128 (240)
..++.+|+|.||.. . ..++++|+++|++||.|..|.|+ +|+|||+|.+.++|++|++.|||..|+|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35688999999921 1 23689999999999999999884 57999999999999999999999999999
Q ss_pred EEEEEEeec
Q 026341 129 VISVEYALK 137 (240)
Q Consensus 129 ~l~v~~a~~ 137 (240)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999865
No 184
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.56 E-value=6.3e-15 Score=118.03 Aligned_cols=78 Identities=23% Similarity=0.320 Sum_probs=72.4
Q ss_pred CCCCCCEEEEeccCCC-CCCHHHHHHhhccCCCeEEEEEe---CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEee
Q 026341 61 NQRPTKTLFVINFDPI-RTRERDIKRHFEPYGNVLHVRIR---RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~-~~~~~~l~~~f~~~G~i~~~~~~---kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 136 (240)
..++.++|||+|| |. .+++++|+++|++||.|..|.|. +|||||+|.+.++|++|++.|||..|.|+.|.|.++.
T Consensus 30 ~~~~~~~l~V~nL-p~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 30 AGAGNSVLLVSNL-NPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp GCCCCSEEEEESC-CTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCCCCCEEEEeCC-CcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 4567899999999 88 89999999999999999999996 7999999999999999999999999999999999997
Q ss_pred cCC
Q 026341 137 KDD 139 (240)
Q Consensus 137 ~~~ 139 (240)
...
T Consensus 109 ~~~ 111 (229)
T 2adc_A 109 HQN 111 (229)
T ss_dssp CCC
T ss_pred Ccc
Confidence 653
No 185
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.55 E-value=4.7e-14 Score=110.00 Aligned_cols=116 Identities=18% Similarity=0.302 Sum_probs=82.1
Q ss_pred ChhHHHHHHHhh--CCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeE
Q 026341 17 DDRDAADAIRGL--DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 94 (240)
Q Consensus 17 ~~~~A~~A~~~l--~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~ 94 (240)
+.+.+..|+... ....+. +..+.|....... .+.. ..........++|||+|| |..+++++|+++|++||.|.
T Consensus 63 d~~~I~~Al~~S~~~~lev~--ed~~~vrR~~~~p-~p~~-~~~~~~~~~~~~l~V~nL-p~~~t~~~L~~~F~~~G~v~ 137 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEIS--EDKTKIRRSPSKP-LPEV-TDEYKNDVKNRSVYIKGF-PTDATLDDIKEWLEDKGQVL 137 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEEC--TTSSEEEECTTSC-CCCC-CHHHHHHHHHTEEEEECC-CTTCCHHHHHHHHTTSCCEE
T ss_pred CHHHHHHHHhhcccceEEEe--cccceEEecccCC-Cccc-chhhhhccccCEEEecCC-CCcCCHHHHHHHHhcCCCEE
Confidence 667777788766 444443 3334443331111 0000 000001123589999999 89999999999999999999
Q ss_pred EEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecC
Q 026341 95 HVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138 (240)
Q Consensus 95 ~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 138 (240)
.|.|+ +|||||+|++.++|++|+..+ +..|+|+.|.|.++..-
T Consensus 138 ~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 138 NIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp EEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred EEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 99885 689999999999999999865 45999999999997654
No 186
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.54 E-value=3.1e-14 Score=117.24 Aligned_cols=78 Identities=28% Similarity=0.546 Sum_probs=71.4
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHH----HhhccCCCeEEEEEe-----CCeEEEEecCHHHHHHHHHhcCCCcccCcEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIK----RHFEPYGNVLHVRIR-----RNFAFVQFETQEEATKALESTDRSKLVDRVIS 131 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~----~~f~~~G~i~~~~~~-----kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 131 (240)
...+.++|||+|| |..+++++|+ ++|.+||.|..|.+. +|||||+|.+.++|++||+.|||..|.|+.|.
T Consensus 5 ~~~~~~~l~V~nl-p~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 5 ETRPNHTIYINNL-NEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 4567899999999 8999999966 899999999999985 48999999999999999999999999999999
Q ss_pred EEEeecCC
Q 026341 132 VEYALKDD 139 (240)
Q Consensus 132 v~~a~~~~ 139 (240)
|.|+....
T Consensus 84 v~~a~~~~ 91 (282)
T 3pgw_A 84 IQYAKTDS 91 (282)
T ss_pred EEEeccCc
Confidence 99997654
No 187
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.2e-14 Score=108.44 Aligned_cols=73 Identities=22% Similarity=0.476 Sum_probs=68.1
Q ss_pred CEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecC
Q 026341 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 138 (240)
Q Consensus 66 ~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 138 (240)
++|||+|| |..+++++|+++|++||.|..|.+. +|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 1 R~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNL-DKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEE-ETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCC-CCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 47999999 8999999999999999999999984 579999999999999999999999999999999998765
Q ss_pred C
Q 026341 139 D 139 (240)
Q Consensus 139 ~ 139 (240)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 188
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=7.2e-14 Score=99.71 Aligned_cols=69 Identities=16% Similarity=0.343 Sum_probs=57.9
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe-----------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEE
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-----------RNFAFVQFETQEEATKALESTDRSKLVDRVIS 131 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~-----------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 131 (240)
...++|||+|| |+.+++++|+++|++||.|. +.++ +|||||+|.+.++|++||+.|+ .++|+.|.
T Consensus 6 ~~~~~lfVgnL-p~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 6 SGSRKVFVGGL-PPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SCCCCEEEECC-CTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCEEEEcCC-CCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 45789999999 89999999999999999999 6552 6899999999999999999984 25666665
Q ss_pred EEEe
Q 026341 132 VEYA 135 (240)
Q Consensus 132 v~~a 135 (240)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 5543
No 189
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.52 E-value=3.4e-14 Score=110.53 Aligned_cols=77 Identities=25% Similarity=0.499 Sum_probs=68.7
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 132 (240)
...+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||.. ++..|.|+.|.|
T Consensus 9 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 9 EPEQLRKLFIGGL-SFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCGGGGEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 4456889999999 8899999999999999999999884 57999999999999999986 999999999999
Q ss_pred EEeecCC
Q 026341 133 EYALKDD 139 (240)
Q Consensus 133 ~~a~~~~ 139 (240)
.++....
T Consensus 87 ~~~~~~~ 93 (196)
T 1l3k_A 87 KRAVSRE 93 (196)
T ss_dssp EECCC--
T ss_pred ecccCcc
Confidence 9987653
No 190
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.51 E-value=4.7e-14 Score=115.10 Aligned_cols=76 Identities=33% Similarity=0.481 Sum_probs=70.7
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeec
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 137 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 137 (240)
...+.++|||+|| |..+|+++|.++|.+||.|..|.+. +|||||+|.+.++|+.|+..|||..|.|+.|.|.++.+
T Consensus 18 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 18 TYTQRCRLFVGNL-PTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp SSCGGGEEEEESC-CTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 3455789999999 8999999999999999999999996 79999999999999999999999999999999999864
No 191
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.51 E-value=4.2e-14 Score=111.67 Aligned_cols=74 Identities=27% Similarity=0.408 Sum_probs=67.5
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEe
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 135 (240)
+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++|++.||+..|.|+.|.|.++
T Consensus 27 ~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 27 IMSRVYVGSI-YYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHTEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred cCCEEEEECC-CCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 4689999999 8899999999999999999999983 689999999999999999999999999999999887
Q ss_pred ecC
Q 026341 136 LKD 138 (240)
Q Consensus 136 ~~~ 138 (240)
...
T Consensus 106 ~~~ 108 (216)
T 2qfj_A 106 SNI 108 (216)
T ss_dssp SCC
T ss_pred CCc
Confidence 643
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.51 E-value=1.9e-14 Score=112.35 Aligned_cols=74 Identities=24% Similarity=0.353 Sum_probs=69.7
Q ss_pred CCEEEEeccCCC-CCCHHHHHHhhccCCCeEEEEEe---CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCC
Q 026341 65 TKTLFVINFDPI-RTRERDIKRHFEPYGNVLHVRIR---RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 139 (240)
Q Consensus 65 ~~~l~v~nl~~~-~~~~~~l~~~f~~~G~i~~~~~~---kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 139 (240)
.++|||+|| |. .+++++|+++|++||.|..|.+. +|||||+|.+.++|++|+..|||..|.|+.|.|.++....
T Consensus 3 ~~~l~v~nl-p~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 3 NSVLLVSNL-NPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CCEEEEECC-CSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred CcEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 579999999 88 89999999999999999999996 7999999999999999999999999999999999998654
No 193
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.47 E-value=1.3e-13 Score=116.02 Aligned_cols=76 Identities=17% Similarity=0.273 Sum_probs=66.2
Q ss_pred CCCCCCEEEEeccC-CCCCCHHHHHHhhccCCCeEEEEE--eCCeEEEEecCHHHHHHHHHhcCCCccc---Cc--EEEE
Q 026341 61 NQRPTKTLFVINFD-PIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLV---DR--VISV 132 (240)
Q Consensus 61 ~~~~~~~l~v~nl~-~~~~~~~~l~~~f~~~G~i~~~~~--~kg~afV~f~~~~~a~~A~~~l~g~~~~---g~--~l~v 132 (240)
...|+.+|||+|+. ++.+++++|+++|++||+|..|.+ .+|||||+|.+.++|++||+.|||.++. |+ +|.|
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~ 93 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 93 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEE
Confidence 46788999999941 678999999999999999999988 4899999999999999999999999873 44 6777
Q ss_pred EEee
Q 026341 133 EYAL 136 (240)
Q Consensus 133 ~~a~ 136 (240)
.|+.
T Consensus 94 ~~~~ 97 (345)
T 3tht_A 94 NFVE 97 (345)
T ss_dssp EECS
T ss_pred EEee
Confidence 7774
No 194
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=5.4e-13 Score=92.68 Aligned_cols=63 Identities=22% Similarity=0.301 Sum_probs=56.2
Q ss_pred CCCCHHHHHHhhccCCCeEEEEEe---CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeecCCC
Q 026341 76 IRTRERDIKRHFEPYGNVLHVRIR---RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 140 (240)
Q Consensus 76 ~~~~~~~l~~~f~~~G~i~~~~~~---kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 140 (240)
..+++++|+++|.+||+|..|.|+ +|||||+|++.++|+.||+.+++ +.|++|.|+|+.....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 468999999999999999999994 79999999999999999998554 6799999999987653
No 195
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.46 E-value=2.1e-13 Score=95.82 Aligned_cols=75 Identities=25% Similarity=0.417 Sum_probs=64.8
Q ss_pred CCCCEEEEeccC-CCCC--------CHHHHHHhhccCCCeEEEEEe----------CCeEEEEecCHHHHHHHHHhcCCC
Q 026341 63 RPTKTLFVINFD-PIRT--------RERDIKRHFEPYGNVLHVRIR----------RNFAFVQFETQEEATKALESTDRS 123 (240)
Q Consensus 63 ~~~~~l~v~nl~-~~~~--------~~~~l~~~f~~~G~i~~~~~~----------kg~afV~f~~~~~a~~A~~~l~g~ 123 (240)
.|+.+|.|.|+- +..+ .+++|+++|++||.|..|.|+ +|+|||+|.+.++|++|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 578899999972 2222 237899999999999999984 589999999999999999999999
Q ss_pred cccCcEEEEEEeec
Q 026341 124 KLVDRVISVEYALK 137 (240)
Q Consensus 124 ~~~g~~l~v~~a~~ 137 (240)
.++|+.|.|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999854
No 196
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.45 E-value=1.7e-13 Score=104.29 Aligned_cols=73 Identities=27% Similarity=0.484 Sum_probs=66.5
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccC----C-------CeEEEEEe--CCeEEEEecCHHHHHHHHHhcCCCcccCcEE
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPY----G-------NVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLVDRVI 130 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~----G-------~i~~~~~~--kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l 130 (240)
+.++|||+|| |..+++++|+++|++| | .|..+.+. +|||||+|.+.++|++|+ .|||..|.|+.|
T Consensus 3 ~~~~l~V~nL-p~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i 80 (172)
T 2g4b_A 3 SARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (172)
T ss_dssp GGGEEEEESC-CTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred cccEEEEcCC-CcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCcee
Confidence 4689999999 8999999999999999 6 77877774 799999999999999999 899999999999
Q ss_pred EEEEeecC
Q 026341 131 SVEYALKD 138 (240)
Q Consensus 131 ~v~~a~~~ 138 (240)
.|.++...
T Consensus 81 ~v~~~~~~ 88 (172)
T 2g4b_A 81 KIRRPHDY 88 (172)
T ss_dssp EEECCSSC
T ss_pred eecCCccc
Confidence 99987654
No 197
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.45 E-value=2.6e-13 Score=103.38 Aligned_cols=75 Identities=25% Similarity=0.418 Sum_probs=66.5
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe----------CCeEEEEecCHHHHHHHHHhcCCCccc---CcEE
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR----------RNFAFVQFETQEEATKALESTDRSKLV---DRVI 130 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~----------kg~afV~f~~~~~a~~A~~~l~g~~~~---g~~l 130 (240)
..++|||+|| |..+++++|+++|.+||+|..|.|. +|||||+|.+.++|++|++.||+..+. +..|
T Consensus 2 ~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQV-PRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 3679999999 8999999999999999999999873 479999999999999999999998876 5788
Q ss_pred EEEEeecCC
Q 026341 131 SVEYALKDD 139 (240)
Q Consensus 131 ~v~~a~~~~ 139 (240)
.+.++....
T Consensus 81 ~~~~~~~~~ 89 (175)
T 3nmr_A 81 QMKPADSEK 89 (175)
T ss_dssp EEEECGGGC
T ss_pred EEccccccc
Confidence 888876554
No 198
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.44 E-value=2.2e-13 Score=106.07 Aligned_cols=74 Identities=27% Similarity=0.469 Sum_probs=66.3
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccC----C-------CeEEEEEe--CCeEEEEecCHHHHHHHHHhcCCCcccCcEE
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPY----G-------NVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLVDRVI 130 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~----G-------~i~~~~~~--kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l 130 (240)
..++|||+|| |..+++++|+++|.+| | .|..+.+. +|||||+|.+.++|++|| .|||..|.|+.|
T Consensus 3 ~~~~l~V~nL-p~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i 80 (198)
T 2yh0_A 3 MARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (198)
T ss_dssp -CCEEEEESC-CTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEE
T ss_pred ceeEEEEcCC-CCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceE
Confidence 4689999999 8999999999999999 5 67777764 799999999999999999 899999999999
Q ss_pred EEEEeecCC
Q 026341 131 SVEYALKDD 139 (240)
Q Consensus 131 ~v~~a~~~~ 139 (240)
.|.++....
T Consensus 81 ~v~~~~~~~ 89 (198)
T 2yh0_A 81 KIRRPHDYQ 89 (198)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999987653
No 199
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.43 E-value=7.9e-14 Score=99.67 Aligned_cols=71 Identities=20% Similarity=0.341 Sum_probs=39.6
Q ss_pred CCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHH
Q 026341 5 LHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRER 81 (240)
Q Consensus 5 ~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~ 81 (240)
..++|||||+|.+.++|++||+.|||..| +|++|.|.++......... .........+|||+|| |..+|++
T Consensus 42 ~~~kg~afV~f~~~~~A~~Ai~~l~~~~~--~g~~i~V~~a~~~~~~~~~---~~~~~~~~~~lyv~Nl-~~~~T~~ 112 (115)
T 4f25_A 42 NGSKGYGFVHFETQEAAERAIEKMNGMLL--NDRKVFVGRFKSRKEREAE---LGARAKEFTNVYIKNF-GPGSTRA 112 (115)
T ss_dssp TEEEEEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEESSCCCC-------------------------------
T ss_pred CCCCceEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEEECCCccccccc---cccccCCCCceEeCCC-CCCcccc
Confidence 34689999999999999999999999999 6999999999865543221 1122334567999999 7777765
No 200
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.42 E-value=2.6e-13 Score=102.79 Aligned_cols=71 Identities=24% Similarity=0.466 Sum_probs=64.3
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEe
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 135 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 135 (240)
+.++|||+|| |..+++++|+++|++||.|..|.+. +|||||+|.+.++|++|+.. +..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGL-NWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSC-CTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCcEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 4689999999 8999999999999999999999984 58999999999999999984 57889999999887
Q ss_pred ec
Q 026341 136 LK 137 (240)
Q Consensus 136 ~~ 137 (240)
.+
T Consensus 79 ~~ 80 (167)
T 2cjk_A 79 IP 80 (167)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 201
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.42 E-value=8.5e-13 Score=93.89 Aligned_cols=76 Identities=14% Similarity=0.214 Sum_probs=64.3
Q ss_pred CCCCCEEEEeccCCC-CC--------CHHHHHHhhccCCCeEEEEEe----CCeEEEEecCHHHHHHHHHhcCCCcccCc
Q 026341 62 QRPTKTLFVINFDPI-RT--------RERDIKRHFEPYGNVLHVRIR----RNFAFVQFETQEEATKALESTDRSKLVDR 128 (240)
Q Consensus 62 ~~~~~~l~v~nl~~~-~~--------~~~~l~~~f~~~G~i~~~~~~----kg~afV~f~~~~~a~~A~~~l~g~~~~g~ 128 (240)
..++.+|.|.|+-.. .. -+++|++.|++||.|..|.|. +|+|||+|.+.++|++|+..|||..|+|+
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 346888999998221 10 135789999999999999994 69999999999999999999999999999
Q ss_pred EEEEEEeec
Q 026341 129 VISVEYALK 137 (240)
Q Consensus 129 ~l~v~~a~~ 137 (240)
.|.|+|+..
T Consensus 84 ~i~v~~~~~ 92 (114)
T 3s6e_A 84 MITAAYVPL 92 (114)
T ss_dssp ECEEEEECH
T ss_pred EEEEEEEcH
Confidence 999999863
No 202
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.42 E-value=6.5e-14 Score=107.09 Aligned_cols=77 Identities=23% Similarity=0.304 Sum_probs=66.2
Q ss_pred CCCCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEE-------eCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEE
Q 026341 61 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 133 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~-------~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 133 (240)
...+.++|||+|| |..+++++|+++|..||.+..+.+ .+|||||+|.+.++|++|++ |||..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNL-NPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECC-CTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 4456899999999 899999999999999986544222 47999999999999999995 99999999999999
Q ss_pred EeecCC
Q 026341 134 YALKDD 139 (240)
Q Consensus 134 ~a~~~~ 139 (240)
++....
T Consensus 87 ~~~~~~ 92 (175)
T 1fje_B 87 KPKGRD 92 (175)
T ss_dssp CCCCSS
T ss_pred cCCCcc
Confidence 987654
No 203
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.42 E-value=2.4e-13 Score=97.28 Aligned_cols=71 Identities=14% Similarity=0.231 Sum_probs=61.2
Q ss_pred CEEEEecc---CCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEecC----HHH----HHHHHH--hcCCCc
Q 026341 66 KTLFVINF---DPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFET----QEE----ATKALE--STDRSK 124 (240)
Q Consensus 66 ~~l~v~nl---~~~~~~~~~l~~~f~~~G~i~~~~~--------~kg~afV~f~~----~~~----a~~A~~--~l~g~~ 124 (240)
..|||+|| .++.+++++|+++|+.||+|..|.+ ++|||||+|.+ +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 2358999999999999999999998 47999999996 333 888988 789999
Q ss_pred ccCcEEEEEEee
Q 026341 125 LVDRVISVEYAL 136 (240)
Q Consensus 125 ~~g~~l~v~~a~ 136 (240)
|+|+.|.|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999864
No 204
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.41 E-value=7.2e-13 Score=94.88 Aligned_cols=75 Identities=19% Similarity=0.230 Sum_probs=64.4
Q ss_pred CCCCEEEEeccCC-C---CCCHHHHHHhhccCCCeEEEEEe------------CCeEEEEecCHHHHHHHHHhcCCCccc
Q 026341 63 RPTKTLFVINFDP-I---RTRERDIKRHFEPYGNVLHVRIR------------RNFAFVQFETQEEATKALESTDRSKLV 126 (240)
Q Consensus 63 ~~~~~l~v~nl~~-~---~~~~~~l~~~f~~~G~i~~~~~~------------kg~afV~f~~~~~a~~A~~~l~g~~~~ 126 (240)
+|+.+|+|.|+-. . .--+++|++.|++||+|..|.|+ +|++||+|.+.++|++|+..|||..|+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3688999999821 1 12368999999999999999884 279999999999999999999999999
Q ss_pred CcEEEEEEeec
Q 026341 127 DRVISVEYALK 137 (240)
Q Consensus 127 g~~l~v~~a~~ 137 (240)
|+.|.|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999864
No 205
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.38 E-value=1.1e-13 Score=97.12 Aligned_cols=65 Identities=20% Similarity=0.360 Sum_probs=56.2
Q ss_pred EeccCCCCCCHHHHHHhh------------ccCCCeEEEEEe-------CCeEEEEecCHHHHHHHHHhcCCCcccCcEE
Q 026341 70 VINFDPIRTRERDIKRHF------------EPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVI 130 (240)
Q Consensus 70 v~nl~~~~~~~~~l~~~f------------~~~G~i~~~~~~-------kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l 130 (240)
+.|| ++.+++++|+++| ++||.|..|.|+ +|||||+|.+.++|++|+..|||..++|++|
T Consensus 20 ~~~l-~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGL-RSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCc-ccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 4566 5666777666665 999999999995 6899999999999999999999999999999
Q ss_pred EEEEe
Q 026341 131 SVEYA 135 (240)
Q Consensus 131 ~v~~a 135 (240)
.|+|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=4.5e-12 Score=90.44 Aligned_cols=77 Identities=14% Similarity=0.137 Sum_probs=69.0
Q ss_pred CCCCCCEEEEeccCCCC-CCHHHHHHhhccCCCeEEEEEeCC--eEEEEecC-HHHHHHHHHhcC--CCcccCcEEEEEE
Q 026341 61 NQRPTKTLFVINFDPIR-TRERDIKRHFEPYGNVLHVRIRRN--FAFVQFET-QEEATKALESTD--RSKLVDRVISVEY 134 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~-~~~~~l~~~f~~~G~i~~~~~~kg--~afV~f~~-~~~a~~A~~~l~--g~~~~g~~l~v~~ 134 (240)
..++++.|+|+|| +.. ++.++|+++|++||+|.+|.+..+ .|||.|.+ +++|+.|+..|| +..|+|..+++++
T Consensus 14 ~~~~G~il~v~~l-~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 14 EEKIGCLLKFSGD-LDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp SCCCCCEEEEEES-CCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cccCCeEEEEecC-CCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 5677999999999 777 999999999999999999999754 89999999 899999999994 7789999999988
Q ss_pred eecC
Q 026341 135 ALKD 138 (240)
Q Consensus 135 a~~~ 138 (240)
....
T Consensus 93 L~Ge 96 (121)
T 1owx_A 93 LEGE 96 (121)
T ss_dssp CCHH
T ss_pred CCCH
Confidence 7643
No 207
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=2.9e-12 Score=85.97 Aligned_cols=77 Identities=17% Similarity=0.294 Sum_probs=65.5
Q ss_pred CCCCCCEEEEeccCC---CCCCH----HHHHHhhccCCCeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEE
Q 026341 61 NQRPTKTLFVINFDP---IRTRE----RDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 133 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~---~~~~~----~~l~~~f~~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 133 (240)
..+|..+|+|..++. ...-. .+|.+.|.+||+|..+++..+.+||+|.+.++|.+||. |||..++|+.|+|+
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLS-LNGKELLNRTITIA 81 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGG-GTTCEETTEEEEEE
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHh-cCCeEeCCeEEEEE
Confidence 356788888887721 12223 67899999999999999999999999999999999998 99999999999999
Q ss_pred EeecC
Q 026341 134 YALKD 138 (240)
Q Consensus 134 ~a~~~ 138 (240)
++.+.
T Consensus 82 lkt~d 86 (91)
T 2dnr_A 82 LKSPS 86 (91)
T ss_dssp ECCCS
T ss_pred eCCCC
Confidence 98753
No 208
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.15 E-value=3.2e-11 Score=83.65 Aligned_cols=43 Identities=28% Similarity=0.556 Sum_probs=40.0
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 47 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~ 47 (240)
.++.++|||||+|.++++|++|++.|||..| +|++|.|+||.+
T Consensus 56 ~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~--~gr~l~V~~AkP 98 (99)
T 4fxv_A 56 VAGHSLGYGFVNYVTAKDAERAINTLNGLRL--QSKTIKVSYARP 98 (99)
T ss_dssp SSCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECCB
T ss_pred CCCcccccEEEEECCHHHHHHHHHHhCCCEE--CCEEEEEEEeeC
Confidence 4678899999999999999999999999999 699999999975
No 209
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.15 E-value=3.7e-10 Score=98.43 Aligned_cols=45 Identities=33% Similarity=0.497 Sum_probs=40.9
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
.|++++|||||+|.++++|++||..|||+.| +|++|.|+|+.+..
T Consensus 139 ~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i--~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 139 RSGKPRGYAFIEYEHERDMHSAYKHADGKKI--DGRRVLVDVERGRT 183 (437)
T ss_pred CCCCccceEEEeeccHHHHHHHHHHcCCCEE--CCEEEEEEEeCCCC
Confidence 3678899999999999999999999999999 69999999998543
No 210
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.15 E-value=3.8e-11 Score=83.45 Aligned_cols=64 Identities=41% Similarity=0.518 Sum_probs=51.0
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEecc
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINF 73 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl 73 (240)
++|||||+|.+.++|++|++.|||..| +|+.|.|+++.........+. .........+|||+||
T Consensus 36 ~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~a~~~~~~~~~~~-~~~~~~~~~~ifvg~L 99 (101)
T 2hvz_A 36 PPGFAFVEFEDPRDAEDAVRGLDGKVI--CGSRVRVELSTGMPRRSRFDR-PPARRKLLEVLFNGPL 99 (101)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHSCS--SSCCCEEEESSSCCCSSCCCS-CCCSCCCCSCCCSCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCeE--CCcEEEEEEccCCCCcccCCC-CCccccCCCceecCCC
Confidence 689999999999999999999999998 699999999997664432211 2223344678999999
No 211
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.14 E-value=8.2e-12 Score=88.96 Aligned_cols=68 Identities=26% Similarity=0.337 Sum_probs=57.5
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCCCHHH
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERD 82 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~~ 82 (240)
+++.++|||||+|.+.++|++|+..|||..| +|+.|.|.|+.+.... .++ +...++++
T Consensus 42 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~a~~~~~~-------------------~~~-~~~~~~~~ 99 (115)
T 3lqv_A 42 NTPETRGTAYVVYEDIFDAKNAVDHLSGFNV--SNRYLVVLYYNANRAF-------------------QKM-DTKKKEEQ 99 (115)
T ss_dssp CSTTTTTCEEEEESSHHHHHHHHHHHTTCBS--SSCBCEEEECCHHHHT-------------------TTS-CHHHHHHH
T ss_pred eCCCCCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEEEecCChhh-------------------hhh-hHhHhHHH
Confidence 3456799999999999999999999999999 6999999999865432 355 55678899
Q ss_pred HHHhhccCCC
Q 026341 83 IKRHFEPYGN 92 (240)
Q Consensus 83 l~~~f~~~G~ 92 (240)
|.++|++||.
T Consensus 100 l~~~~~~~g~ 109 (115)
T 3lqv_A 100 LKLLKEKYGI 109 (115)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHhCC
Confidence 9999999983
No 212
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=5.8e-11 Score=80.01 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=63.3
Q ss_pred CCCCCCEEEEeccCCCC-----CCH----HHHHHhhccCCCeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcccCcEEE
Q 026341 61 NQRPTKTLFVINFDPIR-----TRE----RDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVIS 131 (240)
Q Consensus 61 ~~~~~~~l~v~nl~~~~-----~~~----~~l~~~f~~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 131 (240)
..+|..+|+|..+ +.. +-+ .+|.+.|.+||+|..+++...-+||+|.+.++|.+||. |||.+++|+.|+
T Consensus 11 ~GPpD~Tv~V~~~-~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 11 QGPLDATVVVNLQ-SPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp CCCTTCEEEEEES-SCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred cCCCCCeEEEEec-CCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 5678899999988 421 212 56899999999999999999999999999999999998 999999999999
Q ss_pred EEEe
Q 026341 132 VEYA 135 (240)
Q Consensus 132 v~~a 135 (240)
|++-
T Consensus 89 V~~k 92 (95)
T 1ufw_A 89 ISGP 92 (95)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9874
No 213
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.11 E-value=8.3e-11 Score=80.24 Aligned_cols=47 Identities=21% Similarity=0.269 Sum_probs=40.1
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhC-CCcccCCCceEEEEeccCCCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLD-NIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~-g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
.|+.++|||||+|.++++|++||+.|+ +..| +|++|.|+|+.++.+.
T Consensus 39 ~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~--~gr~i~V~~a~~~~~~ 86 (91)
T 2lxi_A 39 SSGQSRGFAFVEFSHLQDATRWMEANQHSLNI--LGQKVSMHYSDPKPKI 86 (91)
T ss_dssp SSCCCSSEEEEECSSHHHHHHHHHTTTTEEEE--TTEEEEEECCCSCCCC
T ss_pred CCCCcCceEEEEecCHHHHHHHHHhcCCCeEE--CCEEEEEEEcCCCCCC
Confidence 468889999999999999999999875 4566 7999999999876543
No 214
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.09 E-value=1e-10 Score=80.44 Aligned_cols=45 Identities=24% Similarity=0.465 Sum_probs=39.2
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCc--ccCCCceEEEEeccC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIP--FGYDRRRLSVEWARG 47 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~--~~~~g~~l~v~~a~~ 47 (240)
.|++++|||||+|.+.++|++|++.|||.. +.++|++|.|+||+.
T Consensus 48 ~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 48 QTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp SSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred CCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 468899999999999999999999999974 222799999999974
No 215
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.06 E-value=1.3e-10 Score=77.81 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=36.4
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEecc
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 46 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~ 46 (240)
.++|||||+|.++++|++|++.||+..| .|++|.|++|.
T Consensus 41 ~~kGfaFVey~~~~eA~~Ai~~Ln~~~l--~gr~I~V~~A~ 79 (89)
T 2wbr_A 41 LNQGIALCKYTTREEANKAQMALNNCVL--ANTTIFAESPS 79 (89)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHTTEEE--TTEEEEEECCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhcCCEE--CCcEEEEEECC
Confidence 4799999999999999999999999999 69999999884
No 216
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.06 E-value=1.5e-10 Score=83.84 Aligned_cols=45 Identities=18% Similarity=0.400 Sum_probs=41.4
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
++++++|||||+|.+.++|++|+..|||..| .|++|.|+|+....
T Consensus 67 ~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l--~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 67 LSDDNSGKAYIVFATQESAQAFVEAFQGYPF--QGNPLVITFSETPQ 111 (127)
T ss_dssp CCCSSCCCEEEEESSHHHHHHHHHHSTTCCC--TTSCCEEEECCCCC
T ss_pred cCCCcCCEEEEEECCHHHHHHHHHHHCCCEe--CCCEEEEEEccCcc
Confidence 4678899999999999999999999999999 69999999998654
No 217
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.05 E-value=7.4e-11 Score=80.22 Aligned_cols=46 Identities=13% Similarity=0.061 Sum_probs=37.8
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~ 50 (240)
.+++++|||||+|.+.++|++|++.|||..| +|+.|.|.++.+...
T Consensus 40 ~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~--~gr~i~V~~~~~~~~ 85 (90)
T 3p5t_L 40 ANGQSKGFALVGVGSEASSKKLMDLLPKREL--HGQNPVVTPSNKLEH 85 (90)
T ss_dssp TTCCEEEEEEECC-CHHHHHHHHHHGGGSCS--SSCCCEECCC-----
T ss_pred CCCccCcEEEEEECCHHHHHHHHHHcCCCee--CCEEEEEEECCCCcc
Confidence 3788899999999999999999999999999 699999999987553
No 218
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.04 E-value=2e-10 Score=81.13 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=40.9
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
.|++++|||||+|.+.++|++||+.|||..| +|+.|.|+++....
T Consensus 43 ~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~--~gr~i~V~~a~~~~ 87 (110)
T 3s8s_A 43 RTRKHLGLARVLFTSTRGAKETVKNLHLTSV--MGNIIHAQLDIKGQ 87 (110)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECSTTH
T ss_pred CCCceeeEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEEECCCCc
Confidence 3688999999999999999999999999999 69999999997543
No 219
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.04 E-value=2.8e-10 Score=75.94 Aligned_cols=45 Identities=24% Similarity=0.476 Sum_probs=41.0
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
.++.++|||||+|.+.++|++|++.|||..| +|++|.|+|+.++.
T Consensus 38 ~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v~~a~~~~ 82 (83)
T 3md1_A 38 QTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL--NGRPLRINWAAKLE 82 (83)
T ss_dssp TTCCEEEEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEECCCCC
T ss_pred CCCCccceEEEEECCHHHHHHHHHHhcCCee--CCcEEEEEecCcCC
Confidence 3677899999999999999999999999999 69999999998653
No 220
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=3.7e-10 Score=78.42 Aligned_cols=47 Identities=23% Similarity=0.476 Sum_probs=42.3
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
.++.++|||||+|.++++|++||+.||+..| +|+.|.|+|+.++...
T Consensus 49 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V~~a~~~~~~ 95 (102)
T 2fc8_A 49 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI--DGNKVTLDWAKPKGEG 95 (102)
T ss_dssp SSCSEEEEEEEECSSHHHHHHHHHHHTTCEE--TTEECEEEECCCCCSS
T ss_pred CCCCcCcEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEEEecCCCCC
Confidence 3677899999999999999999999999999 6999999999976653
No 221
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=4.8e-10 Score=76.96 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=42.4
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
.++.++|||||+|.++++|++|++.|||..| +|++|.|+|+.+....
T Consensus 43 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~a~~~~~~ 89 (96)
T 1x5t_A 43 DTGNSKGYAFINFASFDASDAAIEAMNGQYL--CNRPITVSYAFKKDSK 89 (96)
T ss_dssp TTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE--TTEECEEEESCCCCCC
T ss_pred CCCCcCeEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEEEecccCCC
Confidence 4677899999999999999999999999999 6999999999876543
No 222
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.01 E-value=7.5e-10 Score=76.43 Aligned_cols=46 Identities=28% Similarity=0.265 Sum_probs=42.1
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
++.++|||||+|.+.++|++|++.|||..| +|++|.|+++......
T Consensus 46 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~a~~~~~~ 91 (99)
T 1whw_A 46 TKKPKGFAFVTFMFPEHAVKAYAEVDGQVF--QGRMLHVLPSTIKKEA 91 (99)
T ss_dssp TCCCCSEEEEEESSHHHHHHHHHHTTTEES--SSCEEEEEECCCCSTT
T ss_pred CCCcCeEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEEcCCCccc
Confidence 677899999999999999999999999999 6999999999987654
No 223
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.01 E-value=8.6e-10 Score=78.34 Aligned_cols=47 Identities=23% Similarity=0.399 Sum_probs=42.5
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRH 52 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~ 52 (240)
++.++|||||+|.+.++|++||+.|||..| +|+.|.|+|+.......
T Consensus 53 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~a~~~~~~~ 99 (115)
T 2dgo_A 53 TGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGRQIRTNWATRKPPAP 99 (115)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHTTTCEE--TTEECEEEESSCCCCCS
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEEEEccCCCCCC
Confidence 677899999999999999999999999998 69999999999766543
No 224
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.01 E-value=3.4e-10 Score=76.19 Aligned_cols=43 Identities=26% Similarity=0.468 Sum_probs=38.9
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 48 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~ 48 (240)
++.++|||||+|.+.++|++|++.|||..| +|+.|.|+|+.++
T Consensus 44 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~a~~k 86 (87)
T 3bs9_A 44 TGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGRQIRTNWATRK 86 (87)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEEEC--
T ss_pred CCccceEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEEecCCC
Confidence 677899999999999999999999999998 6999999999854
No 225
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=5.6e-10 Score=77.53 Aligned_cols=47 Identities=34% Similarity=0.392 Sum_probs=42.3
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
.++.++|||||+|.+.++|++|++.||+..| +|+.|.|+|+.+....
T Consensus 49 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V~~a~~~~~~ 95 (102)
T 2cqb_A 49 ETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIRVNLAKPMRIK 95 (102)
T ss_dssp SSCCCSSEEEECCSSHHHHHHHHHHHTTEEE--TTEEEEEEECCCCCCC
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEeCCCCCCC
Confidence 3567899999999999999999999999999 6999999999976654
No 226
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=9.2e-10 Score=75.34 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=41.8
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
+++++|||||+|.+.++|++|++.|||..| +|++|.|+++..+...
T Consensus 43 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~a~~~~~~ 88 (95)
T 2dnz_A 43 TGRSKGYGFITFSDSECARRALEQLNGFEL--AGRPMRVGHVTERLDG 88 (95)
T ss_dssp SCCCCSEEEEEESCHHHHHHHHHHHTTCCS--SSSCCEEEESSCCCCC
T ss_pred CCceeeEEEEEECCHHHHHHHHHHhCCCee--CCcEEEEEEcccccCC
Confidence 577899999999999999999999999999 6999999999876543
No 227
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=6.1e-10 Score=77.49 Aligned_cols=46 Identities=43% Similarity=0.556 Sum_probs=41.7
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
|+.++|||||+|.+.++|++|++.|||..| +|+.|.|+++......
T Consensus 51 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V~~a~~~~~~ 96 (103)
T 2dnm_A 51 TKAPRGFAFVRFHDRRDAQDAEAAMDGAEL--DGRELRVQVARYGRRD 96 (103)
T ss_dssp SCSBCSCEEEEESSSSHHHHHHHHHSSCCB--TTBCCEEEECSSCCSC
T ss_pred CCCCCeEEEEEECCHHHHHHHHHHcCCCEE--CCcEEEEEECCcCCCC
Confidence 577899999999999999999999999998 6999999999976543
No 228
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=8.6e-10 Score=76.99 Aligned_cols=46 Identities=26% Similarity=0.341 Sum_probs=42.0
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
++.++|||||+|.+.++|++|++.||+..| +|++|.|+++.+....
T Consensus 53 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 53 TGQHQGYGFVEFLSEEDADYAIKIMDMIKL--YGKPIRVNKASAHNKN 98 (105)
T ss_dssp SCSBCSCEEEEESSHHHHHHHHHHSSSCBC--SSCBCEEEETTTTSCC
T ss_pred CCcCCcEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEEECCCCCcC
Confidence 677899999999999999999999999998 6999999999976643
No 229
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=6.8e-10 Score=77.26 Aligned_cols=46 Identities=37% Similarity=0.629 Sum_probs=41.9
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
++.++|||||+|.+.++|++||+.|||..| +|+.|.|+|+.+....
T Consensus 53 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~a~~~~~~ 98 (103)
T 2cq0_A 53 TGQSKGFAFISFHRREDAARAIAGVSGFGY--DHLILNVEWAKPSTNS 98 (103)
T ss_dssp SCSEEEEEEEEESSHHHHHHHHHHTTTCEE--TTEECEEEESSCCCCS
T ss_pred CCceeeEEEEEECCHHHHHHHHHHcCCCee--CCcEEEEEECCCCCCC
Confidence 677899999999999999999999999999 6999999999976543
No 230
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=6.8e-10 Score=76.85 Aligned_cols=45 Identities=18% Similarity=0.352 Sum_probs=40.8
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~ 50 (240)
+++++|||||+|.+.++|++|++.|||..| +|+.|.|+|+.+...
T Consensus 54 ~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a~~~~~ 98 (100)
T 2do4_A 54 AGKPKGLAYVEYENESQASQAVMKMDGMTI--KENIIKVAISNSGPS 98 (100)
T ss_dssp TSCEEEEEEEEESSHHHHHHHHHHHTTEES--SSCEEEEEECCCCSC
T ss_pred CCCEEeEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEEEECCCCCC
Confidence 577899999999999999999999999998 699999999987543
No 231
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=8.1e-10 Score=78.21 Aligned_cols=47 Identities=28% Similarity=0.246 Sum_probs=42.4
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
.+++++|||||+|.+.++|++||+.|||..| .|+.|.|+++......
T Consensus 60 ~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 60 ETGKPKGDATVSYEDPPTAKAAVEWFDGKDF--QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE--TTEECEEECSSCCCCS
T ss_pred CCCCeeeEEEEEECCHHHHHHHHHHcCCCcc--CCCEEEEEECCCCCCC
Confidence 4677899999999999999999999999999 6999999999976544
No 232
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.98 E-value=4.1e-10 Score=78.11 Aligned_cols=43 Identities=23% Similarity=0.248 Sum_probs=39.6
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCC-ceEEEEeccCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDR-RRLSVEWARGE 48 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g-~~l~v~~a~~~ 48 (240)
|++++|||||+|.+.++|++||+.|||..| +| +.|.|.++.+.
T Consensus 50 tg~~kG~afV~f~~~~~A~~Ai~~lng~~~--~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 50 TGKTKGFLFVECGSMNDAKKIIKSFHGKRL--DLKHRLFLYTMKDV 93 (100)
T ss_dssp TTEECSEEEEEESSHHHHHHHHHHHTTCBS--SSSCBCEEEESHHH
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCccc--CCCeEEEEEECchh
Confidence 678899999999999999999999999999 57 99999999753
No 233
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.98 E-value=7.1e-10 Score=76.16 Aligned_cols=45 Identities=24% Similarity=0.399 Sum_probs=41.2
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~ 50 (240)
++.++|||||+|.+.++|++|++.|||..| +|+.|.|.++.+...
T Consensus 40 ~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 40 TGRSKGYAFIEFRDLESSASAVRNLNGYQL--GSRFLKCGYSSNSDI 84 (96)
T ss_dssp TCCBCSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECSCSSG
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEEEcCCCCC
Confidence 577899999999999999999999999999 699999999997653
No 234
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=7.6e-10 Score=76.72 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=41.7
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~ 50 (240)
.+++++|||||+|.++++|++||..||+..| +|+.|.|+|+.+...
T Consensus 48 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 48 QNGKSKGYAFIEFASFEDAKEALNSCNKREI--EGRAIRLELQGPRGS 93 (101)
T ss_dssp SSSCBCSEEEEECSSHHHHHHHHHHTSSEEE--TTEEEEEEECSSCCC
T ss_pred CCCCEeeEEEEEECCHHHHHHHHHHhCCCEe--CCeEEEEEEcCCCCC
Confidence 3677899999999999999999999999999 699999999987654
No 235
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=9.2e-10 Score=76.59 Aligned_cols=46 Identities=24% Similarity=0.374 Sum_probs=41.9
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
++.++|||||+|.+.++|++||+.||+..| +|+.|.|.|+.++...
T Consensus 51 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V~~a~~~~~~ 96 (103)
T 2d9p_A 51 GGRSKGFGFVCFSSPEEATKAVTEMNGRIV--ATKPLYVALAQRKEER 96 (103)
T ss_dssp SSSEEEEEEEEESSHHHHHHHHHHHTTCBS--SSSBCEEEECSSCCCC
T ss_pred CCCcCEEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEEEecccccC
Confidence 567799999999999999999999999999 6999999999976654
No 236
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.97 E-value=1.3e-09 Score=77.65 Aligned_cols=46 Identities=26% Similarity=0.439 Sum_probs=41.8
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
+++++|||||+|.+.++|++|++.|||..| +|+.|.|+++......
T Consensus 44 ~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~--~g~~l~V~~a~~~~~~ 89 (116)
T 2fy1_A 44 TSKSRGFAFITFENPADAKNAAKDMNGKSL--HGKAIKVEQAKKPSFQ 89 (116)
T ss_dssp TTTCCCEEEEECSSHHHHHHHHHHCSSCBC--SSSBCEEEECCCSSCS
T ss_pred CCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEEEECCCCCCC
Confidence 677899999999999999999999999999 6999999999976543
No 237
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=9.7e-10 Score=76.30 Aligned_cols=46 Identities=30% Similarity=0.471 Sum_probs=41.6
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
++.++|||||+|.++++|++|++.||+..| +|++|.|+|+......
T Consensus 50 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~a~~~~~~ 95 (102)
T 1x5s_A 50 TQRSRGFGFVTFENIDDAKDAMMAMNGKSV--DGRQIRVDQAGKSSDN 95 (102)
T ss_dssp SCSCCSEEEEECSSHHHHHHHHHHHTTCCT--TSCCCEEEEEECCCCC
T ss_pred CCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEEECCCCCCC
Confidence 567899999999999999999999999998 6999999999976543
No 238
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.97 E-value=5.9e-10 Score=78.79 Aligned_cols=42 Identities=24% Similarity=0.299 Sum_probs=38.9
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
.++|||||+|.++++|++||+.|||..| +|++|.|+|+.++.
T Consensus 61 ~~~G~afV~f~~~~~A~~Ai~~lng~~~--~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 61 GPSASAYVTYIRSEDALRAIQCVNNVVV--DGRTLKASLGTTKY 102 (111)
T ss_dssp CCCEEEEEEESSHHHHHHHHHHHTTEEE--TTEEEEEESCCCCS
T ss_pred CCCeEEEEEECcHHHHHHHHHHhCCCEE--CCEEEEEEeccccc
Confidence 4579999999999999999999999999 69999999999765
No 239
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.97 E-value=5.3e-10 Score=74.90 Aligned_cols=42 Identities=36% Similarity=0.444 Sum_probs=38.6
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEecc
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 46 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~ 46 (240)
.++.++|||||+|.+.++|++|++.|||..| +|++|.|+|++
T Consensus 44 ~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~ak 85 (85)
T 3mdf_A 44 ETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIRVNLAK 85 (85)
T ss_dssp TTTEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECC
T ss_pred CCCccccEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEEcC
Confidence 4667899999999999999999999999999 69999999984
No 240
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=8.1e-10 Score=77.71 Aligned_cols=47 Identities=47% Similarity=0.638 Sum_probs=41.7
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
.+..++|||||+|.+.++|++||+.||+..| +|++|.|+|+......
T Consensus 56 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V~~a~~~~~~ 102 (109)
T 1x4a_A 56 NRRGGPPFAFVEFEDPRDAEDAVYGRDGYDY--DGYRLRVEFPRSGRGT 102 (109)
T ss_dssp CSSSSSCCEEEEESCHHHHHHHHHHHTTCEE--TTEECEEECCCCCCCC
T ss_pred ECCCCCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEEEcccCCCC
Confidence 4556799999999999999999999999999 6999999999876543
No 241
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=7.1e-10 Score=77.55 Aligned_cols=44 Identities=23% Similarity=0.425 Sum_probs=40.3
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
++.++|||||+|.+.++|++|++.|||..| +|+.|.|+|+.++.
T Consensus 61 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~a~~~~ 104 (106)
T 1p27_B 61 TGYLKGYTLVEYETYKEAQAAMEGLNGQDL--MGQPISVDWCFVRG 104 (106)
T ss_dssp TSSEEEEEEEEESCHHHHHHHHHHHTTCBS--SSSBCEEEESEESS
T ss_pred CCceeeEEEEEECCHHHHHHHHHHhcCCEE--CCcEEEEEeecCCC
Confidence 577899999999999999999999999998 69999999998653
No 242
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=9.2e-10 Score=78.14 Aligned_cols=46 Identities=20% Similarity=0.324 Sum_probs=42.0
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
+++++|||||+|.+.++|++||+.|||..| +|+.|.|+|+......
T Consensus 63 ~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~v~~a~~~~~~ 108 (115)
T 2cpx_A 63 TGRMRGQAFITFPNKEIAWQALHLVNGYKL--YGKILVIEFGKNKKQR 108 (115)
T ss_dssp CSSSCSEEEEECSSHHHHHHHHHHSTTCBC--SSCBCEEEECCCCSCC
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEEEccCCCCC
Confidence 677899999999999999999999999999 6999999999976654
No 243
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.96 E-value=5.2e-10 Score=77.27 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=38.7
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
+.||||||+|++.++|.+|++.||+..+.+.|++|.|+|++.+.
T Consensus 55 ~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 55 PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 46899999999999999999999998744479999999998653
No 244
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.95 E-value=8.5e-10 Score=76.02 Aligned_cols=44 Identities=25% Similarity=0.347 Sum_probs=39.9
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 48 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~ 48 (240)
.+++++|||||+|.++++|++||+.|||..| +|+.|.|+++...
T Consensus 52 ~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 52 EKGMPTGEAMVAFESRDEATAAVIDLNDRPI--GSRKVKLVLGSGP 95 (98)
T ss_dssp SSSCEEEEEEEEESCHHHHHHHHHHTTTCEE--TTEECEEEESSCS
T ss_pred CCCCeeeEEEEEECCHHHHHHHHHHhCCCee--CCeEEEEEEcCCC
Confidence 3667899999999999999999999999999 6999999998753
No 245
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.95 E-value=1.3e-09 Score=76.21 Aligned_cols=46 Identities=35% Similarity=0.491 Sum_probs=41.8
Q ss_pred cCCccceEEEEeCChhHHHHHHHhh-CCCcccCCCceEEEEeccCCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGL-DNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l-~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
++.++|||||+|.+.++|++||+.| |+..| .|+.|.|+|+.+....
T Consensus 54 ~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~--~g~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 54 TGAHRGFGFVDFITKQDAKKAFNALCHSTHL--YGRRLVLEWADSEVTV 100 (107)
T ss_dssp SCSSCSEEEEEESSHHHHHHHHHHHHTCCBS--SSCBCEEEECCCCCCC
T ss_pred CCCcCceEEEEECCHHHHHHHHHHhccCCeE--CCCEEEEEeCCCCCCC
Confidence 6778999999999999999999999 99999 6999999999976543
No 246
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.95 E-value=7e-10 Score=76.67 Aligned_cols=42 Identities=29% Similarity=0.309 Sum_probs=38.7
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEecc
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 46 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~ 46 (240)
.++.++|||||+|.+.++|++|++.|||..| +|+.|.|++|.
T Consensus 58 ~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~V~~A~ 99 (99)
T 2la6_A 58 ETGKLKGEATVSFDDPPSAKAAIDWFDGKEF--SGNPIKVSFAT 99 (99)
T ss_dssp TTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS--SSSBCEEEECC
T ss_pred CCCCeeeEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEEecC
Confidence 3677899999999999999999999999999 69999999974
No 247
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.95 E-value=1.6e-09 Score=74.83 Aligned_cols=45 Identities=20% Similarity=0.395 Sum_probs=40.8
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
++.++|||||+|.+.++|++||+ ||+..| +|+.|.|.++.++...
T Consensus 48 ~~~~~g~afV~f~~~~~a~~A~~-~~~~~~--~g~~l~V~~a~~~~~~ 92 (99)
T 2dgs_A 48 KQRPRGFGFITFEDEQSVDQAVN-MHFHDI--MGKKVEVKRAEPRDSK 92 (99)
T ss_dssp TCSCCSEEEEEESSHHHHHHHHH-HCCCBS--SSCBCEEEECCCCCCC
T ss_pred CCCCCceEEEEECCHHHHHHHHH-hCCCEE--CCeEEEEEECCCCccc
Confidence 67789999999999999999999 999998 6999999999976554
No 248
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=8.1e-10 Score=75.46 Aligned_cols=41 Identities=24% Similarity=0.351 Sum_probs=38.1
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEecc
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 46 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~ 46 (240)
++.++|||||+|.+.++|++|++.||+..| +|++|.|+||+
T Consensus 54 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~ak 94 (94)
T 2e5h_A 54 TRKSKGVAFILFLDKDSAQNCTRAINNKQL--FGRVIKASIAI 94 (94)
T ss_dssp SCCCTTCEEEEESCHHHHHHHHHHTTTEEE--TTEEEEEEECC
T ss_pred CCCcccEEEEEECCHHHHHHHHHHcCCCee--CCcEEEEEecC
Confidence 567899999999999999999999999999 69999999984
No 249
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.95 E-value=7.6e-10 Score=77.41 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=40.2
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCc-eEEEEeccCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRR-RLSVEWARGE 48 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~-~l~v~~a~~~ 48 (240)
.++.++|||||+|.+.++|++|+..|||..| +|+ +|.|+++...
T Consensus 56 ~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~--~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 56 EDGKTKGYIFLEYASPAHAVDAVKNADGYKL--DKQHTFRVNLFTDF 100 (105)
T ss_dssp BTTBSCCEEEEEECSSSHHHHHHHHCSSEEC--STTCEEEEECSCCC
T ss_pred CCCCeeeEEEEEECCHHHHHHHHHHhCCccc--CCCceEEEEEcchH
Confidence 4678899999999999999999999999999 698 9999999754
No 250
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.95 E-value=7e-10 Score=76.92 Aligned_cols=45 Identities=22% Similarity=0.359 Sum_probs=40.5
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~ 50 (240)
.++.++|||||+|.+.++|++||+ |||..| .|+.|.|.++.+...
T Consensus 53 ~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~--~g~~l~V~~a~~~~~ 97 (101)
T 1fj7_A 53 RTGTNRKFGYVDFESAEDLEKALE-LTGLKV--FGNEIKLEKPKGRDG 97 (101)
T ss_dssp EEETTTTEEEEEESSHHHHHHHHH-GGGCCB--TTBCCEEECCSCCCC
T ss_pred CCCCcCcEEEEEECCHHHHHHHHh-cCCcEE--CCcEEEEEEcCCCCC
Confidence 357789999999999999999999 999999 699999999987554
No 251
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=2.2e-09 Score=75.35 Aligned_cols=46 Identities=37% Similarity=0.525 Sum_probs=40.4
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhC--CCcccCCCceEEEEeccCCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLD--NIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~--g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
++.++|||||+|.+.++|++|+..|| +..| +|+.|.|+|+.+....
T Consensus 48 ~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~--~g~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 48 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQL--WGHQIAVDWAEPEIDV 95 (109)
T ss_dssp TTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB--TTBCCEEEESCSSCST
T ss_pred CCCcCcEEEEEecCHHHHHHHHHHhhCCCcee--cCCeEEEEEcCCCCCc
Confidence 56789999999999999999999996 4777 6999999999976653
No 252
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.94 E-value=8.3e-10 Score=76.05 Aligned_cols=46 Identities=24% Similarity=0.379 Sum_probs=41.1
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
|+.++|||||+|.+.++|++|++.|||..| +|+.|.|+++......
T Consensus 46 t~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~a~~~~~~ 91 (98)
T 2cpf_A 46 VLLSMGFGFVEYKKPEQAQKALKQLQGHTV--DGHKLEVRISERATKP 91 (98)
T ss_dssp CEEEEEEEEEEESSHHHHHHHHHHSTTCEE--TTEECEEECSSCSSCC
T ss_pred CcCcccEEEEEECCHHHHHHHHHHhCCCee--CCeEEEEEEccCCCCC
Confidence 347799999999999999999999999999 6999999999876543
No 253
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.94 E-value=4.5e-10 Score=77.23 Aligned_cols=45 Identities=29% Similarity=0.592 Sum_probs=40.5
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
+++.++|||||+|.+.++|++|+..|||..| +|+.|.|+|+.+..
T Consensus 46 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 46 RSLKMRGQAFVIFKEVSSATNALRSMQGFPF--YDKPMRIQYAKTDS 90 (97)
T ss_dssp HHHHHTTCEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECSSCC
T ss_pred cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEE--CCcEEEEEEccCCC
Confidence 3456789999999999999999999999999 69999999998754
No 254
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.94 E-value=7.4e-10 Score=76.03 Aligned_cols=46 Identities=20% Similarity=0.352 Sum_probs=41.3
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~ 50 (240)
.++.++|||||+|.+.++|++|+..|||..| +|+.|.|+++.+...
T Consensus 48 ~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 48 QDGKSKGIAYIEFKSEADAEKNLEEKQGAEI--DGRSVSLYYTGEKGG 93 (96)
T ss_dssp ETTEEEEEEEEEESSHHHHHHHHHHTTEEEE--TTEEEEEEECSSSCC
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEEEcCCCCC
Confidence 4667899999999999999999999999999 699999999986543
No 255
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.94 E-value=1.1e-09 Score=77.22 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=41.0
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
.++.++|||||+|.+.++|++|+..|||..| +|+.|.|.|+.++.
T Consensus 63 ~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~a~~~~ 107 (110)
T 1oo0_B 63 RTGFSKGYALVEYETHKQALAAKEALNGAEI--MGQTIQVDWCFVKG 107 (110)
T ss_dssp TTSSBCSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEESEESS
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHcCCCEE--CCcEEEEEEcccCC
Confidence 3677899999999999999999999999999 69999999998654
No 256
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.94 E-value=9.6e-10 Score=79.89 Aligned_cols=45 Identities=38% Similarity=0.618 Sum_probs=41.1
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
.++.++|||||+|.+.++|++||+.|||..| +|++|.|+|+.+++
T Consensus 83 ~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i--~g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 83 QSRRSRGFAFVYFENVDDAKEAKERANGMEL--DGRRIRVDFSITKR 127 (129)
T ss_dssp SSSCCCCEEEEEESCHHHHHHHHHHHTTCCS--SSSCCEESCCSSSS
T ss_pred CCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEEEEecCCC
Confidence 3577899999999999999999999999999 69999999998754
No 257
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.93 E-value=9.7e-10 Score=78.09 Aligned_cols=46 Identities=22% Similarity=0.392 Sum_probs=41.9
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
++.++|||||+|.+.++|++||+.||+..| +|+.|.|+|+.++...
T Consensus 63 ~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~a~~~~~~ 108 (115)
T 2cpz_A 63 TNLSKCFGFVSYDNPVSAQAAIQSMNGFQI--GMKRLKVQLKRSKNDS 108 (115)
T ss_dssp SCSEEEEEEEECSSHHHHHHHHHHHTTCEE--TTEECEEECCCCSCCC
T ss_pred CCCcCccEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEEEcCCCCcC
Confidence 677899999999999999999999999999 6999999999976543
No 258
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=9.4e-10 Score=75.72 Aligned_cols=43 Identities=26% Similarity=0.319 Sum_probs=39.4
Q ss_pred CCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 5 LHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 5 ~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
+.++|||||+|.+.++|++|++.|||..| +|+.|.|+++.++.
T Consensus 53 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 53 QGPRRRAFLHYPDSAAAQQAVSCLQGLRL--GTDTLRVALARQQR 95 (97)
T ss_dssp ETTTTEEEEECSSHHHHHHHHHHHTTCCS--SSSCCEEEECCCCC
T ss_pred CCCCcEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEEcCCCC
Confidence 46799999999999999999999999999 69999999998754
No 259
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.93 E-value=1.3e-09 Score=75.83 Aligned_cols=45 Identities=24% Similarity=0.484 Sum_probs=40.6
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
+++++|||||+|.+.++|++|| .||+..| +|+.|.|+++.+....
T Consensus 52 ~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V~~a~~~~~~ 96 (103)
T 2dng_A 52 TDKFKGFCYVEFDEVDSLKEAL-TYDGALL--GDRSLRVDIAEGRKQD 96 (103)
T ss_dssp SCSEEEEEEEEESSHHHHHHHG-GGTTCEE--TTEECEEEECCCCCCC
T ss_pred CCccceEEEEEECCHHHHHHHH-hhCCCeE--CCeEEEEEEecCCCCC
Confidence 6778999999999999999999 8999999 6999999999976543
No 260
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=1e-09 Score=75.11 Aligned_cols=42 Identities=38% Similarity=0.574 Sum_probs=38.8
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 47 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~ 47 (240)
++.++|||||+|.+.++|++|++.|||..| +|++|.|+|+..
T Consensus 53 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~a~~ 94 (95)
T 2cqc_A 53 SRRSRGFAFVYFENVDDAKEAKERANGMEL--DGRRIRVSGPSS 94 (95)
T ss_dssp SSSEEEEEEEEESSHHHHHHHHHHHTTEEE--TTEEEEEECCSC
T ss_pred CCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEEEecCC
Confidence 567899999999999999999999999999 699999999873
No 261
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=2e-09 Score=74.85 Aligned_cols=44 Identities=25% Similarity=0.459 Sum_probs=39.8
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
.++|||||+|.+.++|++|+..||+..| .|+.|.|+|+.+....
T Consensus 53 ~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~a~~~~~~ 96 (103)
T 2cqi_A 53 SNDPYCFVEFYEHRDAAAALAAMNGRKI--LGKEVKVNWATTPSSQ 96 (103)
T ss_dssp SSCCEEEEEESSHHHHHHHHHHHTTEEE--TTEEEEEEECCCTTCC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCCc--CCCeEEEEECCCCccc
Confidence 3689999999999999999999999999 6999999999976543
No 262
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.92 E-value=1.6e-09 Score=75.65 Aligned_cols=46 Identities=26% Similarity=0.309 Sum_probs=41.1
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCC---ceEEEEeccCCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDR---RRLSVEWARGERGR 51 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g---~~l~v~~a~~~~~~ 51 (240)
++.++|||||+|.+.++|++||+.|||..|. | ++|.|+|+......
T Consensus 52 ~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--gg~~~~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 52 DGSSKGCAFVKFSSHTEAQAAIHALHGSQTM--PGASSSLVVKFADTDKES 100 (105)
T ss_dssp SSCEEEEEEEEESSHHHHHHHHHHHSSCCCC--TTCSSCCEEEESCSSCCC
T ss_pred CCCcCcEEEEEeCCHHHHHHHHHHHcCCccC--CCCCccEEEEECccCccc
Confidence 5677999999999999999999999999984 5 99999999976654
No 263
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.92 E-value=8.8e-10 Score=77.01 Aligned_cols=40 Identities=28% Similarity=0.431 Sum_probs=37.3
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEec
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 45 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a 45 (240)
++.++|||||+|.++++|++|+..|||..| +|++|.|+|+
T Consensus 64 ~~~~~G~~fV~f~~~~~A~~A~~~lng~~~--~Gr~i~v~~s 103 (104)
T 1jmt_A 64 GDHLVGNVYVKFRREEDAEKAVIDLNNRWF--NGQPIHAELS 103 (104)
T ss_dssp SSSSEEEEEEEESCHHHHHHHHHHHTTCEE--TTEECCEEEC
T ss_pred CCCccEEEEEEECCHHHHHHHHHHHCCCEE--CCEEEEEEEc
Confidence 456799999999999999999999999999 6999999986
No 264
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=1.1e-09 Score=74.33 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=40.0
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
.+++++|||||+|.+.++|++|+. ||+..| +|+.|.|.++....
T Consensus 45 ~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~--~gr~i~v~~a~~~~ 88 (91)
T 2dgw_A 45 AHGNKTGYIFVDFSNEEEVKQALK-CNREYM--GGRYIEVFREKSGP 88 (91)
T ss_dssp TTSCEEEEEEEECSSHHHHHHHHH-SCSEEE--TTEEEEEEEESSCC
T ss_pred CCCCCceEEEEEECCHHHHHHHHH-hCCcee--CCcEEEEEECCcCC
Confidence 367789999999999999999999 999999 69999999998654
No 265
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.92 E-value=1.2e-09 Score=76.38 Aligned_cols=41 Identities=22% Similarity=0.125 Sum_probs=38.5
Q ss_pred CCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccC
Q 026341 5 LHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 47 (240)
Q Consensus 5 ~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~ 47 (240)
+.++|||||+|.++++|++|+..|||..| +|+.|.|.++..
T Consensus 53 ~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~--~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 53 DDEAVRIFLEFERVESAIKAVVDLNGRYF--GGRVVKACFYNL 93 (105)
T ss_dssp TTTSEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECCH
T ss_pred CCCcEEEEEEECCHHHHHHHHHHHCCCEE--CCcEEEEEEcCH
Confidence 57799999999999999999999999999 699999999974
No 266
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.91 E-value=1.1e-09 Score=75.01 Aligned_cols=42 Identities=24% Similarity=0.304 Sum_probs=38.7
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEecc
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 46 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~ 46 (240)
.++.++|||||+|.++++|++||+.||+..| +|++|.|+++.
T Consensus 52 ~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~gr~l~v~~a~ 93 (95)
T 2ek1_A 52 EKGMPTGEAMVAFESRDEATAAVIDLNDRPI--GSRKVKLSGPS 93 (95)
T ss_dssp TTSCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEECCC
T ss_pred CCCCEeeEEEEEECCHHHHHHHHHHhCCCeE--CCcEEEEEecc
Confidence 3567899999999999999999999999999 69999999886
No 267
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.91 E-value=1.1e-09 Score=76.94 Aligned_cols=43 Identities=21% Similarity=0.376 Sum_probs=39.8
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 48 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~ 48 (240)
++.++|||||+|.+.++|++|++.|||..| +|++|.|+++.++
T Consensus 64 ~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i--~g~~l~V~~a~~k 106 (108)
T 2jrs_A 64 TGRSKGYGFITFSDSECAKKALEQLNGFEL--AGRPMKVGHVTER 106 (108)
T ss_dssp TTEEEEEEEEEESCHHHHHHHHHHHTTCCS--SSSCCEEECSCSS
T ss_pred CCccceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEEEcccC
Confidence 567799999999999999999999999998 6999999999865
No 268
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.91 E-value=1.6e-09 Score=78.17 Aligned_cols=46 Identities=22% Similarity=0.388 Sum_probs=41.7
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
++.++|||||+|.+.++|++||+.|||..| +|+.|.|+|+......
T Consensus 60 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 60 TGYLKGYTLVEYETYKEAQAAMEGLNGQDL--MGQPISVDWCFVRGPP 105 (126)
T ss_dssp TSSBCSCEEEEESSHHHHHHHHHHHTTCBS--SSSBCEEEESEESSSC
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCee--CCeEEEEEEecCCCCC
Confidence 677899999999999999999999999999 6999999999865543
No 269
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.91 E-value=1.2e-09 Score=74.31 Aligned_cols=46 Identities=24% Similarity=0.311 Sum_probs=41.4
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~ 50 (240)
.++.++|||||+|.+.++|++|++.||+..| +|+.|.|+++.+...
T Consensus 43 ~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v~~a~~~~~ 88 (92)
T 2dgv_A 43 ENGKSKGCGVVKFESPEVAERACRMMNGMKL--SGREIDVRIDRNASG 88 (92)
T ss_dssp SSSCEEEEEEEEESSHHHHHHHHHHHTTCCB--TTBCCCCEECSCCSS
T ss_pred cCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEEcCCCCC
Confidence 3667899999999999999999999999999 699999999987553
No 270
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.90 E-value=2.9e-09 Score=75.00 Aligned_cols=46 Identities=24% Similarity=0.358 Sum_probs=41.5
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhC------CCcccCCCceEEEEeccCCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLD------NIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~------g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
++.++|||||+|.+.++|++||+.|| +..| +|+.|.|.|+.+....
T Consensus 53 ~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~--~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 53 TEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL--DGRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES--SSCEEEEECCCCCCCC
T ss_pred CCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE--cCEEEEEEECCCCccC
Confidence 56789999999999999999999999 9888 6999999999976543
No 271
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=2.3e-09 Score=74.70 Aligned_cols=44 Identities=23% Similarity=0.420 Sum_probs=40.4
Q ss_pred CCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 5 LHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 5 ~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
+.++|||||+|.+.++|++|| .||+..| +|+.|.|+++.++...
T Consensus 54 g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 54 ERLKGFGYAEFEDLDSLLSAL-SLNEESL--GNKRIRVDVADQAQDK 97 (104)
T ss_dssp TSBCSCEEEEESSHHHHHHHH-GGGTCEE--TTEECEEEECCCCCCC
T ss_pred CCcCeEEEEEECCHHHHHHHH-hcCCCEe--CCcEEEEEEccCCCCC
Confidence 778999999999999999999 8999999 6999999999976654
No 272
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.90 E-value=1.5e-09 Score=76.71 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=37.7
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCC
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 48 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~ 48 (240)
+++|||||+|.+.++|++||+.|||..| +|+.|.|+++...
T Consensus 65 ~~rGfaFV~F~~~e~A~~Ai~~lng~~l--~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 65 DFDGTGALEFPSEEILVEALERLNNIEF--RGSVITVERDDNP 105 (111)
T ss_dssp SSSCCEEEEESSHHHHHHHHHHTTTEEE--TTEEEEEEESCC-
T ss_pred CCCCEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEEECCCC
Confidence 5799999999999999999999999999 6999999999754
No 273
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=1.3e-09 Score=75.83 Aligned_cols=45 Identities=29% Similarity=0.480 Sum_probs=41.0
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~ 50 (240)
++.++|||||+|.+.++|++|++.|||..| +|+.|.|+|+.....
T Consensus 46 ~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a~~~~~ 90 (104)
T 1p1t_A 46 TGKPKGYGFCEYQDQETALSAMRNLNGREF--SGRALRVDNAASEKN 90 (104)
T ss_dssp TTEEEEEEEEECSCHHHHHHHHHHSSSBSC--SSSCBEEEETTCTTH
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCee--CCcEEEEEeCCCccc
Confidence 667799999999999999999999999999 699999999987553
No 274
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=1.8e-09 Score=75.21 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=41.4
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCc-ccCCCceEEEEeccCCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIP-FGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~-~~~~g~~l~v~~a~~~~~~ 51 (240)
++.++|||||+|.+.++|++|++.||+.. | +|++|.|.++.+....
T Consensus 47 ~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--~g~~l~v~~a~~~~~~ 93 (104)
T 2dhg_A 47 TGVSKGYGFVKFTDELEQKRALTECQGAVGL--GSKPVRLSVAIPKASR 93 (104)
T ss_dssp TCCEEEEEEEEESCHHHHHHHHHHTTTCCSS--SSSCCCCCBCCCCCSC
T ss_pred CCCccceEEEEECCHHHHHHHHHHccCCccc--CCEeEEEEEccCCCcC
Confidence 67789999999999999999999999998 8 6999999999866543
No 275
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.89 E-value=1.3e-09 Score=75.57 Aligned_cols=42 Identities=26% Similarity=0.425 Sum_probs=39.0
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 48 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~ 48 (240)
+++++|||||+|.+.++|++|+ .|||..| +|+.|.|+++.+.
T Consensus 57 ~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~--~g~~l~V~~a~~~ 98 (100)
T 2j76_E 57 PERLKGFGYAEFEDLDSLLSAL-SLNEESL--GNRRIRVDVADQA 98 (100)
T ss_dssp TCCCCSCEEEEECCHHHHHHHH-HTTTCCB--TTBCCCCEECCCS
T ss_pred CCccCeEEEEEECCHHHHHHHH-hcCCCEE--CCeEEEEEeccCC
Confidence 6788999999999999999999 8999999 6999999999864
No 276
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.89 E-value=1.6e-09 Score=75.86 Aligned_cols=41 Identities=29% Similarity=0.428 Sum_probs=38.6
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEecc
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 46 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~ 46 (240)
+++++|||||+|.+.++|++|++.|||..| +|+.|.|+++.
T Consensus 66 ~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~a~ 106 (107)
T 3ulh_A 66 SGRSLGTADVHFERKADALKAMKQYNGVPL--DGRPMNIQLVT 106 (107)
T ss_dssp TSCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEEEC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEEEeC
Confidence 677899999999999999999999999999 69999999986
No 277
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=3.3e-09 Score=73.69 Aligned_cols=44 Identities=30% Similarity=0.381 Sum_probs=40.0
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
.++|||||+|.+.++|++||..||+..| +|+.|.|+++.+....
T Consensus 53 ~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a~~~~~~ 96 (103)
T 2cq3_A 53 GSKGFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATARVMT 96 (103)
T ss_dssp TTCCEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEECCSSCCC
T ss_pred CCcEEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEEEEcccCCCC
Confidence 3699999999999999999999999999 6999999999976544
No 278
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=5.1e-09 Score=74.11 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=40.6
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~ 50 (240)
+++++|||||+|.+.++|++||+.||+..| +|+.|.|+++.....
T Consensus 52 ~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a~~~~~ 96 (114)
T 2do0_A 52 DGKSRGIGTVTFEQSIEAVQAISMFNGQLL--FDRPMHVKMDERALP 96 (114)
T ss_dssp TCSEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECSCCCC
T ss_pred CCCeeeEEEEEECCHHHHHHHHHHhCCCEe--CCCEEEEEEcccCCC
Confidence 567799999999999999999999999999 699999999986543
No 279
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=2.3e-09 Score=75.52 Aligned_cols=42 Identities=31% Similarity=0.427 Sum_probs=38.5
Q ss_pred CCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCC
Q 026341 5 LHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 48 (240)
Q Consensus 5 ~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~ 48 (240)
+.++|||||+|.+.++|++|++.|||..| +|+.|.|+++.++
T Consensus 66 ~~~kg~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~a~~~ 107 (109)
T 2err_A 66 RGSKGFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATAR 107 (109)
T ss_dssp TBCTTEEEEECCCSHHHHHHHHHHTTCEE--TTEECEEEECCCS
T ss_pred CCCceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEEECCCC
Confidence 34699999999999999999999999999 6999999999864
No 280
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.87 E-value=1.4e-09 Score=80.28 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=42.0
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~ 50 (240)
.++.++|||||+|.+.++|++||..|||..| +|+.|.|+|+.....
T Consensus 87 ~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~--~g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 87 KEGRMKGQAFIGLPNEKAAAKALKEANGYVL--FGKPMVVQFARSARP 132 (143)
T ss_dssp EETTTEEEEEEECSSHHHHHHHHHHHTTBEE--TTEECEEEECCCSCC
T ss_pred cCCCcccEEEEEeCCHHHHHHHHHHhCCCEe--CCcEEEEEECCCCCC
Confidence 5788899999999999999999999999999 699999999986543
No 281
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.87 E-value=2.2e-09 Score=72.27 Aligned_cols=41 Identities=22% Similarity=0.394 Sum_probs=38.2
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
++|||||+|.+.++|++|++.|||..| +|+.|.|+++.+..
T Consensus 46 ~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a~~~~ 86 (88)
T 4a8x_A 46 SKGYAYVEFENPDEAEKALKHMDGGQI--DGQEITATAVLAPW 86 (88)
T ss_dssp ECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEEECCCC
T ss_pred CCcEEEEEEecHHHHHHHHHHcCCCeE--CCeEEEEEECCCCC
Confidence 799999999999999999999999999 69999999997643
No 282
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.87 E-value=2.4e-09 Score=72.31 Aligned_cols=43 Identities=33% Similarity=0.495 Sum_probs=39.4
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
++.++|||||+|.+.++|++|+ .|||..| +|+.|.|+++.+..
T Consensus 44 ~~~~~g~afV~f~~~~~a~~a~-~~~g~~~--~g~~l~V~~a~~~~ 86 (89)
T 3ucg_A 44 SGHPKGFAYIEFSDKESVRTSL-ALDESLF--RGRQIKVIPKRTNR 86 (89)
T ss_dssp SSSCCEEEEEEESSTHHHHHHG-GGTTCEE--TTEECEEEETTTTS
T ss_pred CCCcceEEEEEECCHHHHHHHH-hcCCCEE--CCcEEEEEEccCCC
Confidence 6788999999999999999999 8999999 69999999998643
No 283
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.87 E-value=1.7e-09 Score=81.18 Aligned_cols=43 Identities=14% Similarity=0.134 Sum_probs=40.1
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 47 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~ 47 (240)
.|++++|||||+|.+.++|++||+.|||..| +|+.|.|.++..
T Consensus 94 ~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~--~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 94 ANGQSKGYAEVVVASENSVHKLLELLPGKVL--NGEKVDVRPATR 136 (156)
T ss_dssp TTCCEEEEEEEEESCHHHHHHHHHHSTTCEE--TTEECEEEECCH
T ss_pred CCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCeEeEEEEcCC
Confidence 4788899999999999999999999999999 699999999974
No 284
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=2.8e-09 Score=73.22 Aligned_cols=40 Identities=25% Similarity=0.299 Sum_probs=37.5
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
+|||||+|.+.++|++|++.|||..| +|++|.|+++.+..
T Consensus 52 rg~afV~f~~~~~A~~Ai~~l~g~~~--~gr~l~V~~a~~~~ 91 (96)
T 2dgx_A 52 QLKAVVQMENLQDAIGAVNSLHRYKI--GSKKILVSLATGAS 91 (96)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTEEE--TTEEEEEEECCCSS
T ss_pred CeEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEEEcCCCC
Confidence 89999999999999999999999999 69999999998654
No 285
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.87 E-value=3.1e-09 Score=78.04 Aligned_cols=46 Identities=30% Similarity=0.490 Sum_probs=41.8
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
+++++|||||+|.+.++|++||+.|||..| +|+.|.|+++......
T Consensus 80 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 80 TRQSRGYGFVKFQSGSSAQQAIAGLNGFNI--LNKRLKVALAASGHQR 125 (139)
T ss_dssp TTEEEEEEEEEESSHHHHHHHHHHTTTEEC--SSCEEEEEESSCCCCC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEEECCCCCCC
Confidence 567799999999999999999999999998 6999999999976554
No 286
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=3e-09 Score=73.14 Aligned_cols=44 Identities=25% Similarity=0.271 Sum_probs=39.9
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
.++|||||+|.+.++|++||..|||..| +|++|.|+|+.+....
T Consensus 47 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~v~~a~~~~~~ 90 (97)
T 1x5p_A 47 PPRNCAFVTYEKMESADQAVAELNGTQV--ESVQLKVNIARKQPML 90 (97)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHTTTEEE--TTEEEEEECCSSCCCC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEEECCCCCCC
Confidence 5699999999999999999999999999 6999999999876543
No 287
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.86 E-value=1.6e-09 Score=74.71 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=40.0
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCce----EEEEeccCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRR----LSVEWARGER 49 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~----l~v~~a~~~~ 49 (240)
++.++|||||+|.+.++|++|++.|||..| +|+. |.|+|+.+..
T Consensus 48 ~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~~~~~l~v~~a~~~~ 95 (99)
T 2div_A 48 TGIPAGYCFVEFADLATAEKCLHKINGKPL--PGATPAKRFKLNYATYSG 95 (99)
T ss_dssp SCCEEEEEEEECSCHHHHHHHHHTTTTSEE--SSCSSCEECCEEETTCCS
T ss_pred CCCcCCEEEEEeCCHHHHHHHHHHHcCCcc--CCCCcceeEEEeecCCCC
Confidence 677899999999999999999999999999 6888 9999998654
No 288
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.86 E-value=2e-09 Score=73.68 Aligned_cols=42 Identities=24% Similarity=0.278 Sum_probs=38.5
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 47 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~ 47 (240)
++.++|||||+|.++++|++|++.||+..| +|++|.|+|+..
T Consensus 53 ~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~a~~ 94 (95)
T 2ywk_A 53 EGKPKSFGFVCFKHPESVSYAIALLNGIRL--YGRPINVSGPSS 94 (95)
T ss_dssp TSCEEEEEEEEESSTHHHHHHHHHHTTCEE--TTEECEEECCCC
T ss_pred CCCCceEEEEEECCHHHHHHHHHHhCCCEE--CCCEEEEEEcCC
Confidence 466799999999999999999999999999 699999999863
No 289
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.86 E-value=3.9e-09 Score=73.71 Aligned_cols=48 Identities=21% Similarity=0.113 Sum_probs=41.2
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCccc-CCCceEEEEeccCCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFG-YDRRRLSVEWARGERGR 51 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~-~~g~~l~v~~a~~~~~~ 51 (240)
+++++|||||+|.+.++|++|++.||+..++ ..|++|.|.++..+...
T Consensus 51 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 51 TGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG 99 (106)
T ss_dssp SCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSCC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCccccc
Confidence 6778999999999999999999999998752 13799999999976543
No 290
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.86 E-value=4.2e-09 Score=79.00 Aligned_cols=46 Identities=43% Similarity=0.614 Sum_probs=42.1
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
++.++|||||+|.+.++|++|+..|||..| +|++|.|.|+.+....
T Consensus 108 ~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 108 TKESRGFAFVRFHDKRDAEDAMDAMDGAVL--DGRELRVQMARYGRPP 153 (158)
T ss_dssp CTTSCCEEEEEESBHHHHHHHHHHSTTEES--SSSEEEEEEECCSSCC
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEEECCCCCCC
Confidence 788999999999999999999999999998 6999999999976543
No 291
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.86 E-value=4.2e-09 Score=75.81 Aligned_cols=46 Identities=26% Similarity=0.340 Sum_probs=41.6
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
++.++|||||+|.+.++|++|++.|||..| +|+.|.|+++......
T Consensus 72 ~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~a~~~~~~ 117 (124)
T 2kt5_A 72 SGRSLGTADVHFERRADALKAMKQYKGVPL--DGRPMDIQLVASQIDL 117 (124)
T ss_dssp SSSCCSEEEEEESSHHHHHHHHHHHTTEES--SSCEEEEEEECCTTCC
T ss_pred CCCEeeEEEEEECCHHHHHHHHHHcCCCEE--CCcEEEEEEeCCCCCC
Confidence 677899999999999999999999999998 6999999999875543
No 292
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.86 E-value=1e-09 Score=72.93 Aligned_cols=38 Identities=21% Similarity=0.419 Sum_probs=34.6
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCc-eEEE
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRR-RLSV 42 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~-~l~v 42 (240)
.+++++|||||+|.+.++|++|++.|||..| +|+ +|.|
T Consensus 42 ~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~--~g~~~l~V 80 (81)
T 2krb_A 42 EDGKTKGYIFLEYASPAHAVDAVKNADGYKL--DKQHTFRV 80 (81)
T ss_dssp BTTBCCCEEEEEESSHHHHHHHHTTSSSCCC--SSSSCCCC
T ss_pred CCCcEeEEEEEEECCHHHHHHHHHHhcCccc--CCceeEEe
Confidence 4778899999999999999999999999999 588 8876
No 293
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.85 E-value=2.8e-09 Score=74.53 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=37.4
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccC
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 47 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~ 47 (240)
.++|||||+|.++++|++|+..|||..| +|++|.|.|+..
T Consensus 57 ~~~G~~fV~f~~~~~A~~Ai~~lnG~~f--~GR~i~v~~~~~ 96 (105)
T 3v4m_A 57 PGCGKIFVEFTSVFDCQKAMQGLTGRKF--ANRVVVTKYCDP 96 (105)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEEECH
T ss_pred CCcEEEEEEECCHHHHHHHHHHhCCCEe--CCCEEEEEEeCH
Confidence 5799999999999999999999999999 799999999864
No 294
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.85 E-value=2e-09 Score=70.24 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=36.1
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEec
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 45 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a 45 (240)
++.++|||||+|.++++|++|++ ||+..| +|++|.|++|
T Consensus 37 ~~~~~g~afV~f~~~~~a~~a~~-~~~~~~--~g~~l~v~~A 75 (75)
T 2mss_A 37 TNRHRGFGFVTFESEDIVEKVCE-IHFHEI--NNKMVECKKA 75 (75)
T ss_dssp STTSCBEEEEECSCHHHHHHHHS-SSCCCS--SSCCCEEECC
T ss_pred CCCcCcEEEEEECCHHHHHHHHH-CCCCEE--CCEEEEEEeC
Confidence 67789999999999999999998 999999 6999999986
No 295
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.85 E-value=3.4e-09 Score=79.43 Aligned_cols=45 Identities=27% Similarity=0.523 Sum_probs=41.2
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~ 50 (240)
++.++|||||+|.+.++|++||+.||+..| +|++|.|+|+.+...
T Consensus 77 ~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~a~~~~~ 121 (156)
T 1h2v_Z 77 KKTACGFCFVEYYSRADAENAMRYINGTRL--DDRIIRTDWDAGFKE 121 (156)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHTTTSEE--TTEECEEEEESCCCT
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEEECCCCCC
Confidence 577899999999999999999999999999 699999999987554
No 296
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=2.8e-09 Score=72.08 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=38.5
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
.|||||+|.+.++|++|++.|||..| .|++|.|.||+.....
T Consensus 46 gG~AfV~F~~~esA~~A~~~l~G~~l--~gr~i~v~~A~~~sd~ 87 (96)
T 2diu_A 46 GCSAILRFINQDSAERAQKRMENEDV--FGNRIIVSFTPKNREL 87 (96)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCCS--SSSCCEEESSCCSCCC
T ss_pred cCEEEEEECCHHHHHHHHHHhcCCcc--CCceEEEEecCCCcce
Confidence 39999999999999999999999999 4999999999976654
No 297
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=5.2e-09 Score=70.88 Aligned_cols=42 Identities=29% Similarity=0.448 Sum_probs=38.7
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
+|||||+|.+.++|++|++.||+..| +|++|.|+|+.+....
T Consensus 42 ~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 42 KNYGFVHIEDKTAAEDAIRNLHHYKL--HGVNINVEASKNKSKA 83 (90)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCBC--SSCBCEEECSSCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhcCCcc--CCcEEEEEECCCCCCC
Confidence 79999999999999999999999998 6999999999976653
No 298
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=3.7e-09 Score=72.03 Aligned_cols=44 Identities=25% Similarity=0.434 Sum_probs=39.4
Q ss_pred CccceEEEEeCChhHHHHHHHhhCC-CcccCCCceEEEEeccCCCCC
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDN-IPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g-~~~~~~g~~l~v~~a~~~~~~ 51 (240)
.++|||||+|.+.++|++|++.||| ..| +|++|.|+|+.++...
T Consensus 42 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~--~g~~l~v~~a~~~~~~ 86 (93)
T 2cqh_A 42 LKSGYAFVDYPDQNWAIRAIETLSGKVEL--HGKIMEVDYSVSKKLR 86 (93)
T ss_dssp EETTEEEECCSCHHHHHHHHHHHTTTCEE--TTEECEEEECCCCCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHccCCeeE--CCEEEEEEEccCcccc
Confidence 3589999999999999999999999 888 6999999999876543
No 299
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.84 E-value=2.5e-09 Score=72.25 Aligned_cols=41 Identities=22% Similarity=0.295 Sum_probs=37.9
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCC
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 48 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~ 48 (240)
+++|||||+|.++++|++|++.|||..| +|++|.|+|+...
T Consensus 38 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 38 RNKRTAFVTLLNGEQAQNAIQMFHQYSF--RGKDLIVQLQPTD 78 (88)
T ss_dssp GGGTEEEECCSCHHHHHHHHHHHTTEEE--TTEEEEEEECCCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhCCCeE--CCcEEEEEEcCCC
Confidence 5689999999999999999999999999 6999999999753
No 300
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.84 E-value=2e-09 Score=76.71 Aligned_cols=42 Identities=24% Similarity=0.414 Sum_probs=38.1
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEecc
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 46 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~ 46 (240)
.+++++|||||+|.+.++|++|++.|||..| +|+.|.|+|++
T Consensus 77 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V~~ak 118 (118)
T 2khc_A 77 QTSLSKCFGFVSFDNPDSAQVAIKAMNGFQV--GTKRLKVQLKK 118 (118)
T ss_dssp SSSCCCCEEEEEEESSHHHHHHHHHCCCCEE--TTEECCEEEC-
T ss_pred CCCCcCcEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEEecC
Confidence 3677899999999999999999999999999 69999999974
No 301
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.83 E-value=4.9e-09 Score=73.15 Aligned_cols=45 Identities=16% Similarity=0.227 Sum_probs=37.9
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
.||||||+|++.++|++|++.|++..+.+.|++|.|+|+..+...
T Consensus 50 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~~ 94 (104)
T 1wex_A 50 FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRIT 94 (104)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcccc
Confidence 489999999999999999999987643237999999999876543
No 302
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.83 E-value=2.2e-09 Score=72.69 Aligned_cols=44 Identities=30% Similarity=0.464 Sum_probs=37.0
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~ 50 (240)
++.++|||||+|.+.+ |++|+..|||..| +|++|.|++|.+...
T Consensus 39 ~~~~~g~afV~f~~~~-a~~a~~~l~g~~~--~g~~l~V~~a~~~~~ 82 (90)
T 2ki2_A 39 TKKPKGFGFVEMQEES-VSEAIAKLDNTDF--MGRTIRVTEANPKKS 82 (90)
T ss_dssp SCCCCEEEEEEECTTH-HHHHHHTSCSSCC--SSSSCSEEEC-----
T ss_pred CCCcceEEEEEECCHH-HHHHHHHhCCCEE--CCeEEEEEEcCCCCC
Confidence 5778999999999999 9999999999999 699999999986543
No 303
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.83 E-value=2.9e-09 Score=77.94 Aligned_cols=46 Identities=43% Similarity=0.614 Sum_probs=41.8
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
+++++|||||+|.+.++|++||+.|||..| +|++|.|+|+.+....
T Consensus 85 ~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i--~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 85 TKESRGFAFVRFHDKRDAEDAMDAMDGAVL--DGRELRVQMARYGRPP 130 (135)
T ss_dssp SSSCCSCCEEECSCHHHHHHHHTTTTTCCS--SSSCCEEEECCCCCCC
T ss_pred CCccceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEEECCCCCCC
Confidence 678899999999999999999999999998 6999999999976543
No 304
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.82 E-value=3.2e-09 Score=73.73 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=37.3
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~ 50 (240)
..+|||||+|+++++|++||+.||+..+.+.|++|.|+|+.....
T Consensus 50 ~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~ 94 (102)
T 1x4d_A 50 NKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKR 94 (102)
T ss_dssp SSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCTT
T ss_pred cCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCCC
Confidence 457999999999999999999998754212799999999996543
No 305
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.81 E-value=3.3e-09 Score=74.89 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=37.1
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~ 50 (240)
.++|||||+|++.++|++||+.||+..+.+.|++|.|+|+.....
T Consensus 60 ~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~ 104 (112)
T 1x4f_A 60 RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKK 104 (112)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSS
T ss_pred cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccccc
Confidence 468999999999999999999887543222799999999986554
No 306
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.81 E-value=1.2e-08 Score=70.96 Aligned_cols=44 Identities=14% Similarity=0.412 Sum_probs=39.6
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCC
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRH 52 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~ 52 (240)
.+|||||+|.+.++|++||+.||+..| +|+.|.|+|+.+.....
T Consensus 44 ~~~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 44 LKDYAFIHFDERDGAVKAMEEMNGKDL--EGENIEIVFAKPPDQKR 87 (103)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHTTEEE--TTEEEEEEECCCCCCCC
T ss_pred ECCEEEEEeCCHHHHHHHHHHHCCCcc--CCCEEEEEEcCCCcccc
Confidence 378999999999999999999999998 69999999999766543
No 307
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=2.6e-09 Score=76.96 Aligned_cols=43 Identities=19% Similarity=0.147 Sum_probs=39.1
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 48 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~ 48 (240)
.+++++|||||+|.+.++|++||+ ||+..| +|+.|.|.++..+
T Consensus 62 ~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~--~gr~i~V~~a~~~ 104 (124)
T 1wel_A 62 PNGKATGEGFVEFRNEADYKAALC-RHKQYM--GNRFIQVHPITKK 104 (124)
T ss_dssp TTSSEEEEEEEEBSSSHHHHHHHT-SCSBCS--TTSCBEEEEECHH
T ss_pred CCCCCCeEEEEEECCHHHHHHHHH-hCCCeE--CCcEEEEEECCHH
Confidence 467889999999999999999999 999999 6999999998753
No 308
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.81 E-value=3.1e-08 Score=78.48 Aligned_cols=73 Identities=19% Similarity=0.224 Sum_probs=60.3
Q ss_pred CCEEEEeccCC----CCCCHHHHHHhhccCCCeEEEEEe------------CCeEEEEecCHHHHHHHHHhcCCCcccCc
Q 026341 65 TKTLFVINFDP----IRTRERDIKRHFEPYGNVLHVRIR------------RNFAFVQFETQEEATKALESTDRSKLVDR 128 (240)
Q Consensus 65 ~~~l~v~nl~~----~~~~~~~l~~~f~~~G~i~~~~~~------------kg~afV~f~~~~~a~~A~~~l~g~~~~g~ 128 (240)
...+.+.|+-. ....+++|.+.|.+||.|..+.|+ +|++||+|.+.++|++|+..|||..++|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 44555555411 233468899999999999999984 47999999999999999999999999999
Q ss_pred EEEEEEeec
Q 026341 129 VISVEYALK 137 (240)
Q Consensus 129 ~l~v~~a~~ 137 (240)
.|.|.+...
T Consensus 204 ~i~~~~~~~ 212 (222)
T 3dxb_A 204 KVVAEVYDQ 212 (222)
T ss_dssp BCEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999753
No 309
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.80 E-value=3.7e-09 Score=75.44 Aligned_cols=41 Identities=22% Similarity=0.189 Sum_probs=37.8
Q ss_pred CCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccC
Q 026341 5 LHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 47 (240)
Q Consensus 5 ~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~ 47 (240)
+.++|||||+|.++++|.+|+..|||..| +|+.|.|.|+..
T Consensus 68 ~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f--~GR~i~v~~~~~ 108 (118)
T 3ue2_A 68 AEIIVKIFVEFSIASETHKAIQALNGRWF--AGRKVVAEVYDQ 108 (118)
T ss_dssp CEEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEEECH
T ss_pred CcceEEEEEEECCHHHHHHHHHHHCCCEE--CCcEEEEEEcCh
Confidence 45689999999999999999999999999 799999999864
No 310
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=4.1e-09 Score=74.69 Aligned_cols=43 Identities=26% Similarity=0.281 Sum_probs=39.2
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
++.++|||||+|.+.++|++|| .|||..| +|+.|.|+++....
T Consensus 63 ~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V~~a~~~~ 105 (114)
T 2cq4_A 63 SRRSKGIAYVEFCEIQSVPLAI-GLTGQRL--LGVPIIVQASQAEK 105 (114)
T ss_dssp SSSCCCCEEEEESCGGGHHHHH-HHTTEEE--TTEEEEEEEHHHHH
T ss_pred CCccCcEEEEEeCcHHHHHHHH-HcCCCEe--CCeEEEEEecCCCc
Confidence 5778999999999999999999 8999999 69999999998544
No 311
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.80 E-value=5.5e-09 Score=72.07 Aligned_cols=43 Identities=30% Similarity=0.424 Sum_probs=39.0
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~ 50 (240)
+.+|||||+|.+.++|++|++.|||..| +|++|.|.|+.++..
T Consensus 49 ~~kg~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 49 KDKGFGFIRLETRTLAEIAKVELDNMPL--RGKQLRVRFACHSAS 91 (99)
T ss_dssp TTTTEEEEECSSSHHHHHHHHHHTTCCB--TTBCCEEEESSCCSC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCEe--CCceEEEEEcCCCCC
Confidence 3589999999999999999999999998 699999999987553
No 312
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=8e-09 Score=73.03 Aligned_cols=43 Identities=30% Similarity=0.374 Sum_probs=39.1
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~ 50 (240)
.++|||||+|.+.++|++|+..|||..| +|++|.|+|+.+...
T Consensus 62 ~~~G~afV~f~~~~~A~~Ai~~lng~~~--~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 62 HPDGVASVSFRDPEEADYCIQTLDGRWF--GGRQITAQAWDGTTD 104 (112)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHSTTCEE--TTEECEEEECCSCCC
T ss_pred CCCEEEEEEECCHHHHHHHHHHcCCCEE--CCcEEEEEEeCCCCC
Confidence 3699999999999999999999999999 699999999987543
No 313
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=1.1e-08 Score=72.68 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=39.2
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~ 50 (240)
+++++|||||+|.+.++|++||+.|++ .| .|+.|.|+|+.....
T Consensus 55 ~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~--~g~~l~V~~a~~~~~ 98 (116)
T 2cqd_A 55 TGKSRGYGFVTMADRAAAERACKDPNP-II--DGRKANVNLAYLGAK 98 (116)
T ss_dssp SCCCCSEEEEEESSHHHHHHHHTCSSC-EE--TTEECEEEESTTTCC
T ss_pred CCccceEEEEEECCHHHHHHHHHhCCC-cC--CCEEEEEEEcccCCC
Confidence 677899999999999999999999998 66 699999999986543
No 314
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=6.7e-09 Score=71.64 Aligned_cols=42 Identities=26% Similarity=0.438 Sum_probs=38.7
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~ 50 (240)
.+|||||+|.+.++|++|+..|||..| +|+.|.|+|+.+...
T Consensus 50 ~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 50 IRDYAFVHFSNREDAVEAMKALNGKVL--DGSPIEVTLAKPVDK 91 (99)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHSSEEE--TTEEEEEECCCCCCC
T ss_pred eCCeEEEEeCCHHHHHHHHHHhCCCEe--CCcEEEEEECCCCCC
Confidence 489999999999999999999999999 699999999987654
No 315
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.79 E-value=6.6e-09 Score=71.39 Aligned_cols=40 Identities=28% Similarity=0.518 Sum_probs=37.4
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccCC--CceEEEEeccCCC
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYD--RRRLSVEWARGER 49 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~~--g~~l~v~~a~~~~ 49 (240)
+|||||+|.+.++|++|++.||+..| . |+.|.|+|+.++.
T Consensus 53 ~g~afV~f~~~~~A~~A~~~l~g~~~--~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 53 DSFAYIQYESLDAAQAACAKMRGFPL--GGPDRRLRVDFAKSGP 94 (97)
T ss_dssp SCCEEEEESSHHHHHHHHHHHTTCBC--SSSSCBCEEEECCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEe--CCCCcEEEEEECCCCC
Confidence 89999999999999999999999998 5 8999999998754
No 316
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.79 E-value=4.6e-09 Score=79.51 Aligned_cols=46 Identities=20% Similarity=0.316 Sum_probs=41.2
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~ 50 (240)
.++.++|||||+|.+.++|++||..|||..| .|++|.|.|+.....
T Consensus 109 ~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 109 RTGFSKGYALVEYETHKQALAAKEALNGAEI--MGQTIQVDWCFVKGP 154 (165)
T ss_dssp TTSSEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEESEECC-
T ss_pred CCCcEeeEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEEEEecCCCC
Confidence 3677899999999999999999999999999 699999999986554
No 317
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.78 E-value=8.2e-09 Score=77.51 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=38.8
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
..+|||||+|.+.++|++|++.|||..|+.+++.|.|+|+++..
T Consensus 82 ~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 82 NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 35789999999999999999999999996335999999999764
No 318
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.78 E-value=6.9e-09 Score=71.43 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=37.1
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCC
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 48 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~ 48 (240)
++|||||+|.+.++|++|+..|||..| +|+.|.|+++...
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 56 KNAFGFIQFDNPQSVRDAIEXESQEMN--FGKKLILEVSSSN 95 (97)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHTTSEE--TTEECEEEECCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEEecCCC
Confidence 489999999999999999999999999 6999999999854
No 319
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.78 E-value=7.1e-09 Score=74.40 Aligned_cols=43 Identities=26% Similarity=0.294 Sum_probs=39.3
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~ 50 (240)
.++|||||+|.+.++|++|++.|||..| +|+.|.|.|+.....
T Consensus 71 ~~kg~aFV~f~~~~~A~~Ai~~lng~~~--~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 71 PPRNCAFVTYEKMESADQAVAELNGTQV--ESVQLKVNIARKQPM 113 (121)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCBC--SSCBCEEEECCSSCC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEEEeCCCCC
Confidence 5699999999999999999999999999 699999999987643
No 320
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.78 E-value=1e-08 Score=73.71 Aligned_cols=45 Identities=24% Similarity=0.387 Sum_probs=40.3
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~ 50 (240)
.++.++|||||+|.+.++|++|+ .|||..| +|+.|.|+++.....
T Consensus 73 ~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V~~a~~~~~ 117 (124)
T 2jwn_A 73 FSGHPKGYAYIEFAERNSVDAAV-AMDETVF--RGRTIKVLPKRTNMP 117 (124)
T ss_dssp TTSSCEEEEEEEESSHHHHHHHH-TTTTCEE--TTEECEEEESSCCCS
T ss_pred CCCCcccEEEEEECCHHHHHHHH-hcCCCeE--CCeEEEEEECCCCCC
Confidence 36788999999999999999999 7999999 699999999986543
No 321
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.78 E-value=4.3e-09 Score=73.17 Aligned_cols=44 Identities=20% Similarity=0.140 Sum_probs=39.0
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
++++++|||||+|.++++|++||+ +|+..| +|+.|.|.++....
T Consensus 50 ~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~--~gr~i~V~~~~~~~ 93 (102)
T 1wez_A 50 PDGRVTGEADVEFATHEDAVAAMA-KDKANM--QHRYVELFLNSTAG 93 (102)
T ss_dssp SSSCEEEEEEEECSSSHHHHHHHT-TSSCCS--SSSCCEEEEECCCC
T ss_pred CCCCEeeEEEEEECCHHHHHHHHH-hCCCeE--CCcEEEEEECCCCC
Confidence 377889999999999999999995 899988 69999999988654
No 322
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.78 E-value=2.6e-09 Score=77.71 Aligned_cols=44 Identities=27% Similarity=0.519 Sum_probs=40.3
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCC----cccCCCceEEEEeccCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNI----PFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~----~~~~~g~~l~v~~a~~~~~ 50 (240)
|++++|||||+|.+. +|++|+..|||. .| +|+.|.|+++.+...
T Consensus 63 tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~--~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 63 TQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI--DGKTINVEFAKGSKR 110 (131)
T ss_dssp SSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG--GGCCCCCEECCCSCC
T ss_pred CCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC--CCEEEEEEECCCCCC
Confidence 788999999999999 999999999999 87 699999999987654
No 323
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.77 E-value=5.2e-09 Score=72.92 Aligned_cols=43 Identities=7% Similarity=0.128 Sum_probs=37.3
Q ss_pred ccceEEEEeCChhHHHHHHHhhCC--CcccCCCceEEEEeccCCCCC
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDN--IPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g--~~~~~~g~~l~v~~a~~~~~~ 51 (240)
.||||||+|+++++|++||+.|++ ..| .|++|.|+|+..+...
T Consensus 51 ~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l--~Gr~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 51 GKNQAFIEMNTEEAANTMVNYYTSVTPVL--RGQPIYIQFSNHKELK 95 (105)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTSCCEE--TTEECCBCCCSSSSCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceE--CCEEEEEEEcCCCCCC
Confidence 489999999999999999998875 566 6999999999876544
No 324
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.77 E-value=1.1e-08 Score=71.87 Aligned_cols=42 Identities=21% Similarity=0.463 Sum_probs=38.7
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
+|||||+|.+.++|++|+..|||..| +|+.|.|.|+......
T Consensus 61 ~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a~~~~~~ 102 (109)
T 1x4g_A 61 KGYSFVRFSTHESAAHAIVSVNGTTI--EGHVVKCYWGKESPDM 102 (109)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEECCCCCCSS
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEE--CCcEEEEEecCCCCCC
Confidence 89999999999999999999999999 6999999999976543
No 325
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.76 E-value=5.2e-09 Score=72.96 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=40.8
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
.++.++|||||+|.++++|++||+. |+..| +|+.|.|.++.++...
T Consensus 53 ~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~--~g~~l~V~~a~~~~~~ 98 (105)
T 2dh8_A 53 TTNQSRGFGFVKFKDPNCVGTVLAS-RPHTL--DGRNIDPKPCTPRGMQ 98 (105)
T ss_dssp SSCCEEEEEEEEESSTTHHHHHHHH-CSEEE--TTEEEBCCCSCCSSCC
T ss_pred CCCCcceEEEEEECCHHHHHHHHHh-CCCeE--CCEEEEEEEccCCCCC
Confidence 3677899999999999999999998 99988 6999999999976654
No 326
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.76 E-value=8.2e-09 Score=72.63 Aligned_cols=42 Identities=19% Similarity=0.150 Sum_probs=37.4
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 47 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~ 47 (240)
++++++|||||+|.++++|++|| .||+..| +|+.|.|..+..
T Consensus 51 ~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~--~gr~i~V~~a~~ 92 (109)
T 2dnn_A 51 HVGRNNGNGLVKFLSPQDTFEAL-KRNRMLM--IQRYVEVSPATE 92 (109)
T ss_dssp TTCCCCSEEEEECSSHHHHHHHH-HTTTEEE--TTEEEEEEECCH
T ss_pred CCCCCCeEEEEEECCHHHHHHHH-hcCCCeE--CCeEEEEEECCc
Confidence 35778999999999999999999 5999998 799999988763
No 327
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.76 E-value=6.4e-09 Score=73.06 Aligned_cols=41 Identities=34% Similarity=0.522 Sum_probs=37.7
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~ 50 (240)
+|||||+|.+.++|++|++.|||..| +|+.|.|+|+.....
T Consensus 65 kg~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 65 NGFAFVEFEEAESAAKAIEEVHGKSF--ANQPLEVVYSKLPAK 105 (108)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEE--TTEECEEESCSCCC-
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEEEecCCCC
Confidence 89999999999999999999999999 699999999987553
No 328
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.76 E-value=5.6e-09 Score=68.41 Aligned_cols=39 Identities=21% Similarity=0.328 Sum_probs=35.9
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEec
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 45 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a 45 (240)
++.++|||||+|.+.++|++|++.++ ..| +|++|.|++|
T Consensus 38 ~~~~~g~afV~f~~~~~a~~a~~~~~-~~~--~g~~l~v~~a 76 (77)
T 1uaw_A 38 TKRSRGFGFVTFMDQAGVDKVLAQSR-HEL--DSKTIDPKVA 76 (77)
T ss_dssp SSSCSSEEEECCCCTTHHHHHHHTTT-CCC--SSCCCEEEEC
T ss_pred CCCcCceEEEEEcCHHHHHHHHHhCC-Ccc--CCEEEEEEec
Confidence 67789999999999999999999999 777 6999999987
No 329
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.76 E-value=1.3e-08 Score=68.94 Aligned_cols=42 Identities=29% Similarity=0.457 Sum_probs=38.4
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
+|||||+|.+.++|++|++.|||..| +|+.|.|+++.+....
T Consensus 43 ~~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a~~~~~~ 84 (90)
T 2dnp_A 43 KDYAFVHMEKEADAKAAIAQLNGKEV--KGKRINVELSTKGQKK 84 (90)
T ss_dssp SSCEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEESCCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEECCCCCCC
Confidence 78999999999999999999999999 6999999999876543
No 330
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.76 E-value=1.6e-08 Score=68.76 Aligned_cols=42 Identities=38% Similarity=0.627 Sum_probs=38.4
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
++||||+|.+.++|++|+..||+..| .|+.|.|+++.+....
T Consensus 44 ~~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~a~~~~~~ 85 (92)
T 2dgt_A 44 KDYAFVHMERAEDAVEAIRGLDNTEF--QGKRMHVQLSTSRLRT 85 (92)
T ss_dssp SSEEEEEESCHHHHHHHHHHHTTEEE--TTEEEEEEESSCCCSC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCee--CCcEEEEEEccCCCCC
Confidence 78999999999999999999999999 6999999999876543
No 331
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.76 E-value=3.9e-09 Score=73.08 Aligned_cols=40 Identities=30% Similarity=0.601 Sum_probs=37.3
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccC
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 47 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~ 47 (240)
.++|||||+|.+.++|++|+..|||..| +|+.|.|.|+.+
T Consensus 61 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~a~~ 100 (101)
T 2la4_A 61 PEKGCCFIKYDTHEQAAVCIVALANFPF--QGRNLRTGWGKE 100 (101)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCEE--TTEECCCCBCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEEeccC
Confidence 4689999999999999999999999999 699999999875
No 332
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.75 E-value=6.9e-09 Score=71.20 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=38.4
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~ 50 (240)
++|||||+|.+.++|++|++.|||..| .|++|.|+++.....
T Consensus 44 ~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 44 KNAFGFIQFDNPQSVRDAIECESQEMN--FGKKLILEVSSSNAR 85 (96)
T ss_dssp ETTEEEEEESCHHHHHHHHHHHTCSSC--BTTTBCEEEEECCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCee--CCcEEEEEEcCcCCC
Confidence 389999999999999999999999999 599999999986554
No 333
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=7.6e-09 Score=71.78 Aligned_cols=43 Identities=7% Similarity=0.131 Sum_probs=36.8
Q ss_pred ccceEEEEeCChhHHHHHHHhhC--CCcccCCCceEEEEeccCCCCC
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLD--NIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~--g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
.+|||||+|++.++|++|++.|+ +..| .|++|.|+|+......
T Consensus 50 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~~--~Gr~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 50 GKNQAFLELATEEAAITMVNYYSAVTPHL--RNQPIYIQYSNHKELK 94 (101)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCEE--TTEECEEEECSCSSCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceE--CCcEEEEEEcCcccCc
Confidence 48999999999999999999875 5566 6999999999976543
No 334
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.75 E-value=1.1e-08 Score=71.91 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=38.6
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~ 50 (240)
++.++|||||+|.+.++|++|+..+ +..| +|+.|.|.++.+...
T Consensus 63 tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l--~g~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 63 TKRSRGFGFVTFMDQAGVDKVLAQS-RHEL--DSKTIDPKVAFPRRA 106 (109)
T ss_dssp TCCCTTCEEEEESSHHHHHHHHHSS-CEEE--TTEEEEEEECCCCCC
T ss_pred CCCcCcEEEEEECCHHHHHHHHHHC-CCcC--CCEEEEEEEccCCCC
Confidence 5788999999999999999999976 4666 799999999987654
No 335
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.75 E-value=8.6e-09 Score=72.53 Aligned_cols=42 Identities=24% Similarity=0.423 Sum_probs=38.3
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~ 50 (240)
++|||||+|.+.++|++|++.||+..| +|+.|.|+|+.....
T Consensus 61 ~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 61 HKGYAFVQYSNERHARAAVLGENGRVL--AGQTLDINMAGEPKP 102 (110)
T ss_dssp ETTEEEEECSSSHHHHHHHHHHTTCEE--TTEECCEEESCCCCS
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEEECCCCCC
Confidence 589999999999999999999999999 699999999986543
No 336
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.74 E-value=9.6e-09 Score=72.52 Aligned_cols=42 Identities=29% Similarity=0.247 Sum_probs=38.3
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
.++|||||+|.+.++|++||..|||..| +|+.|.|+|+....
T Consensus 44 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 44 EGGITAIVEFLEPLEARKAFRHLAYSKF--HHVPLYLEWAPIGV 85 (111)
T ss_dssp SSSSCEEEEESCHHHHHHHHHHHTTCBS--SSSBCEEEEEETTT
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEE--CCeEEEEEECCCCc
Confidence 4689999999999999999999999999 69999999998543
No 337
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.74 E-value=5.4e-09 Score=83.42 Aligned_cols=43 Identities=14% Similarity=0.087 Sum_probs=39.9
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 47 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~ 47 (240)
.|++++|||||+|.+.++|++||+.||++.| +|+.|.|.++..
T Consensus 107 ~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~--~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 107 ANGQSKGFALVGVGSEASSKKLMDLLPKREL--HGQNPVVTPVNK 149 (229)
T ss_dssp TTCCEEEEEEEEESCTTHHHHHHTTSTTSCB--TTBCCEEEECCH
T ss_pred CCCccceEEEEEECCHHHHHHHHHHcCCCeE--CCEEeEEEECCC
Confidence 3788999999999999999999999999999 699999999874
No 338
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=1.2e-08 Score=72.52 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=40.8
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
.++.++|||||+|.+.++|++||+. ++..| +|+.|.|+++.++...
T Consensus 64 ~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~--~g~~l~V~~a~~~~~~ 109 (116)
T 1x4b_A 64 ASKRSRGFGFVTFSSMAEVDAAMAA-RPHSI--DGRVVEPKRAVAREES 109 (116)
T ss_dssp TTSSCCSEEEEECSSHHHHHHHHTS-CSEEE--TTEEEEEECCSSCCCC
T ss_pred CCCCcCceEEEEeCCHHHHHHHHHh-CCcEE--CCEEEEEEECCCCccC
Confidence 3677899999999999999999997 99888 6999999999976653
No 339
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=1.6e-08 Score=70.40 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=39.1
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
.+++++|||||+|.++++|++||.. |+..| +|+.|.|.++....
T Consensus 52 ~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~--~gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 52 FQGRSTGEAFVQFASQEIAEKALKK-HKERI--GHRYIEIFKSSRAE 95 (104)
T ss_dssp SSSCBCSEEEEEESSHHHHHHHHTT-TTCCS--SSSCCEEEEECTTT
T ss_pred CCCCcceEEEEEECCHHHHHHHHHh-Ccchh--CCcEEEEEECCHHH
Confidence 3678899999999999999999996 99888 69999999987544
No 340
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=7.5e-09 Score=73.41 Aligned_cols=44 Identities=23% Similarity=0.158 Sum_probs=39.2
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
++++++|||||+|.+.++|++||+. |+..| +|+.|.|.++..+.
T Consensus 52 ~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~--~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 52 NNGQGLGQALVQFKNEDDARKSERL-HRKKL--NGREAFVHVVTLED 95 (114)
T ss_dssp TTSSCSSCEEEECSSHHHHHHHGGG-CSEEE--TTEEEEEEEECHHH
T ss_pred CCCCcceEEEEEECCHHHHHHHHHh-CCCcc--CCeEEEEEECCHHH
Confidence 3678899999999999999999986 99988 69999999998543
No 341
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.20 E-value=1.2e-09 Score=77.71 Aligned_cols=46 Identities=26% Similarity=0.271 Sum_probs=41.7
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
++.++|||||+|.+.++|++|++.|||..| +|++|.|+++.++...
T Consensus 53 ~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 53 TGKLKGEATVSFDDPPSAKAAIDWFDGKEF--SGNPIKVSFATRRADF 98 (116)
Confidence 567899999999999999999999999999 6999999999976544
No 342
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=1.6e-08 Score=72.06 Aligned_cols=44 Identities=7% Similarity=0.123 Sum_probs=37.8
Q ss_pred ccceEEEEeCChhHHHHHHHhhCC--CcccCCCceEEEEeccCCCCCC
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDN--IPFGYDRRRLSVEWARGERGRH 52 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g--~~~~~~g~~l~v~~a~~~~~~~ 52 (240)
.+|||||+|++.++|++|++.|++ ..| .|++|.|+|+..+....
T Consensus 66 ~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l--~Gr~l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 66 GKNQAFIEMNTEEAANTMVNYYTSVTPVL--RGQPIYIQFSNHKELKT 111 (119)
T ss_dssp GGTEEEEECSCHHHHHHHHHHHHHHCCCB--TTBCCEEEECSSSSCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceE--CCeEEEEEEccCCCCCc
Confidence 489999999999999999999885 466 69999999998766543
No 343
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=1.4e-08 Score=71.79 Aligned_cols=45 Identities=13% Similarity=0.126 Sum_probs=38.7
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccC------CCceEEEEeccCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGY------DRRRLSVEWARGE 48 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~------~g~~l~v~~a~~~ 48 (240)
++.++|||||+|.+.++|++|++.|||..|.. .+++|.|.|+.+.
T Consensus 62 ~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 62 SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCCS
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCCC
Confidence 66789999999999999999999999998821 2778999999853
No 344
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=2.3e-09 Score=71.79 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=37.2
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEecc
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 46 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~ 46 (240)
.++.++|||||+|.+.++|++|++.|||..| +|+.|+|.++.
T Consensus 42 ~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~~~~~~~~ 83 (85)
T 1x4e_A 42 TTNKCKGYGFVDFDSPSAAQKAVTALKASGV--QAQMAKQSGPS 83 (85)
T ss_dssp SSCSCCSEEEEEESCHHHHHHHHHHHHHHTC--CEESCCSSCCC
T ss_pred CCCCcCcEEEEEECCHHHHHHHHHHhcCCeE--eeEEEeecCCC
Confidence 3677899999999999999999999999998 69988877654
No 345
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=9.2e-09 Score=68.75 Aligned_cols=38 Identities=29% Similarity=0.492 Sum_probs=35.2
Q ss_pred ccceEEEEeCChhHHHHHHHhh-CCCcccCCCceEEEEecc
Q 026341 7 YAGFAFVYFEDDRDAADAIRGL-DNIPFGYDRRRLSVEWAR 46 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l-~g~~~~~~g~~l~v~~a~ 46 (240)
.+|||||+|.+.++|++|+..| ++..| +|++|.|+|++
T Consensus 47 ~kg~afV~f~~~~~A~~a~~~l~~~~~~--~g~~l~v~~ak 85 (85)
T 2ytc_A 47 RQQCAFIQFATRQAAEVAAEKSFNKLIV--NGRRLNVKWGR 85 (85)
T ss_dssp GGTEEEEEESSHHHHHHHHHTTTTTCEE--TTEECCEEECC
T ss_pred CCCEEEEEECCHHHHHHHHHHhcCCeeE--CCCEEEEEecC
Confidence 4899999999999999999999 99988 69999999974
No 346
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=1.4e-08 Score=71.76 Aligned_cols=43 Identities=9% Similarity=0.155 Sum_probs=37.0
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCcc---cCCCceEEEEeccCCC
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPF---GYDRRRLSVEWARGER 49 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~---~~~g~~l~v~~a~~~~ 49 (240)
.+|||||+|.+.++|++|++.|||..| +..|.+|+|.|+....
T Consensus 62 ~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 62 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQ 107 (114)
T ss_dssp TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCc
Confidence 489999999999999999999999876 2248899999998543
No 347
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.72 E-value=6.9e-09 Score=74.09 Aligned_cols=42 Identities=24% Similarity=0.246 Sum_probs=38.0
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 48 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~ 48 (240)
.++++|||||+|.++++|++||+ ||+..| +|+.|.|.++...
T Consensus 57 ~g~~~G~afV~F~~~~~a~~Al~-~~g~~~--~gr~i~V~~a~~~ 98 (118)
T 2db1_A 57 EGRQSGEAFVELESEDDVKLALK-KDRESM--GHRYIEVFKSHRT 98 (118)
T ss_dssp SSCEEEEEEEEBSSHHHHHHHGG-GTTEEE--TTEEEEEEEECHH
T ss_pred CCCCCeEEEEEECCHHHHHHHHh-cCCCeE--CCeEEEEEECCHH
Confidence 46789999999999999999999 999998 6999999998743
No 348
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.71 E-value=1e-08 Score=71.45 Aligned_cols=41 Identities=15% Similarity=0.258 Sum_probs=37.5
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 47 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~ 47 (240)
.+.++|||||+|.++++|++||. +++..| +|+.|.|.++..
T Consensus 48 ~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~--~gr~l~V~~~~~ 88 (103)
T 1s79_A 48 HKAFKGSIFVVFDSIESAKKFVE-TPGQKY--KETDLLILFKDD 88 (103)
T ss_dssp TTSCCCEEEEEESSHHHHHHHHT-SSCCCC--TTTTCEEEEHHH
T ss_pred CCCCccEEEEEECCHHHHHHHHH-cCCCEE--CCEEEEEEEchH
Confidence 36789999999999999999999 999998 699999998874
No 349
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.70 E-value=1.5e-08 Score=71.08 Aligned_cols=40 Identities=28% Similarity=0.318 Sum_probs=37.0
Q ss_pred ceEEEEeCChhHHHHHHHhhCCCcccCCC-----ceEEEEeccCCCC
Q 026341 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDR-----RRLSVEWARGERG 50 (240)
Q Consensus 9 G~aFV~F~~~~~A~~A~~~l~g~~~~~~g-----~~l~v~~a~~~~~ 50 (240)
|||||+|.+.++|++||+.||++.| +| +.|.|+++.+...
T Consensus 51 g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~~~~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 51 GTGVVEFVRKEDMTYAVRKLDNTKF--RSHEGETAYIRVKVDGPRSP 95 (108)
T ss_dssp TEEEEEESSHHHHHHHHHHSSSEEE--ECTTSCEEEEEEEESSCCSC
T ss_pred CEEEEEECCHHHHHHHHHHHCcCCc--cCCcCcceEEEEEeCCCCCC
Confidence 9999999999999999999999999 58 9999999997554
No 350
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.69 E-value=1.3e-08 Score=72.18 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=36.7
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccC
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 47 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~ 47 (240)
.+|||||+|.+.++|++|+..|||..| +|+.|.|+|+..
T Consensus 54 ~~G~~fV~f~~~e~A~~Ai~~lnG~~f--~GR~i~v~~~~~ 92 (114)
T 3s6e_A 54 AQGNVYVKCPSIAAAIAAVNALHGRWF--AGKMITAAYVPL 92 (114)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHTTCEE--TTEECEEEEECH
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEEEEEcH
Confidence 489999999999999999999999999 799999999873
No 351
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.68 E-value=1.8e-08 Score=67.66 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=35.4
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEec
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 45 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a 45 (240)
.++.++|||||+|.+.++|++|++ +++..| +|+.|.|++|
T Consensus 48 ~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~--~g~~i~v~~A 87 (87)
T 3s7r_A 48 NTGRSRGFGFILFKDAASVEKVLD-QKEHRL--DGRVIDPKKA 87 (87)
T ss_dssp TTCCEEEEEEEEESSTHHHHHHHH-SSCEEE--TTEEEEEEEC
T ss_pred CCCccccEEEEEECCHHHHHHHHH-hCCCEE--CCEEEEEEeC
Confidence 367889999999999999999997 577777 7999999986
No 352
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.67 E-value=1.2e-08 Score=71.57 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=37.8
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 48 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~ 48 (240)
.++++|||||+|.+.++|++||. ||+..| +|+.|.|.++...
T Consensus 51 ~g~~~G~afV~F~~~~~a~~Al~-~~~~~~--~gr~i~V~~a~~~ 92 (107)
T 2lmi_A 51 DGKRRGDALIEMESEQDVQKALE-KHRMYM--GQRYVEVYEINNE 92 (107)
T ss_dssp TSTTCSEEEEEBSSHHHHHHHHT-TTTCCS--SSSCCCCEECCHH
T ss_pred CCCEeeEEEEEECCHHHHHHHHH-hCccee--CCeEEEEEECCHH
Confidence 46789999999999999999999 999988 6999999998743
No 353
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.66 E-value=2.9e-08 Score=71.29 Aligned_cols=42 Identities=31% Similarity=0.304 Sum_probs=36.2
Q ss_pred cce-EEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 8 AGF-AFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 8 kG~-aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
.|| |||+|.+.++|++|++.|||..|+..++.|.|+||++..
T Consensus 61 ~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 61 NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 386 999999999999999999999995222699999998764
No 354
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.66 E-value=2.3e-08 Score=72.25 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=37.6
Q ss_pred ccce-EEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 7 YAGF-AFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 7 ~kG~-aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
.+|| |||+|.+.++|++|++.|||..|+.+++.|.|+|++...
T Consensus 64 ~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 64 NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 4688 999999999999999999999996223899999999764
No 355
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.66 E-value=1.3e-08 Score=74.57 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=37.6
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 47 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~ 47 (240)
.++++|||||+|.++++|++||+ ||+..| +|+.|.|.++..
T Consensus 84 ~g~srG~aFV~F~~~e~a~~Al~-~~g~~l--~gr~i~V~~a~~ 124 (136)
T 2hgl_A 84 EGRQSGEAFVELGSEDDVKMALK-KDRESM--GHRYIEVFKSHR 124 (136)
T ss_dssp SSCEEEEEEEECSSHHHHHHHHT-TTEEES--SSSEEEEEECCH
T ss_pred CCCCCeEEEEEECCHHHHHHHHh-cCCCEE--CCEEEEEEECCh
Confidence 47789999999999999999999 999998 699999998864
No 356
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.65 E-value=1.5e-08 Score=65.94 Aligned_cols=39 Identities=13% Similarity=0.273 Sum_probs=35.0
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEec
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 45 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a 45 (240)
++.++|||||+|.++++|++|++ +++..| +|+.|.|.+|
T Consensus 37 ~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~--~g~~l~v~~a 75 (75)
T 1iqt_A 37 TNKRRGFCFITFKEEEPVKKIME-KKYHNV--GLSKCEIKVA 75 (75)
T ss_dssp CSSSCCCEEEECSSSHHHHHHHT-TSSCCB--TTBCCCEEEC
T ss_pred CCCcCCEEEEEECCHHHHHHHHH-hCCCeE--CCEEEEEEEC
Confidence 57789999999999999999999 588888 6999999875
No 357
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.63 E-value=4.4e-08 Score=67.93 Aligned_cols=44 Identities=18% Similarity=0.327 Sum_probs=38.0
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
++.++|||||+|.+.++|++||. ++..| +|+.|.|.++.++...
T Consensus 53 ~g~~~g~afV~f~~~~~a~~A~~--~~~~~--~g~~l~v~~a~~~~~~ 96 (103)
T 2cqg_A 53 TGHSKGFGFVRFTEYETQVKVMS--QRHMI--DGRWCDCKLPNSKQSQ 96 (103)
T ss_dssp SCSEEEEEEEEESSHHHHHHHHH--SCEEE--TTEEEEEECCCTTCCC
T ss_pred CCCccceEEEEECCHHHHHHHHH--cCCee--CCeEEEEEecCCCCcC
Confidence 67889999999999999999998 46666 6999999999976543
No 358
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=4e-08 Score=67.94 Aligned_cols=42 Identities=21% Similarity=0.293 Sum_probs=35.5
Q ss_pred CCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC
Q 026341 5 LHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 5 ~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~ 50 (240)
++++|||||+|.+.++|++||+.+++ + .|++|.|+|+.....
T Consensus 51 ~~~rGfaFVeF~~~~~A~~Ai~~~~~--~--~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 51 SKKPGTAVVEFATVKAAELAVQNEVG--L--VDNPLKISWLEGQPQ 92 (100)
T ss_dssp SSSSSEEEEEESCHHHHHHHHHTCCB--C--SSSBCEEECSSCCCC
T ss_pred cCCCCEEEEEECCHHHHHHHHHhcCC--C--CCCeEEEEEccCCCC
Confidence 36799999999999999999998655 3 489999999986653
No 359
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.61 E-value=3.2e-08 Score=66.32 Aligned_cols=36 Identities=25% Similarity=0.478 Sum_probs=33.1
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEe
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW 44 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~ 44 (240)
..+|||||+|.++++|++|+ .|||..| +|+.|.|+.
T Consensus 51 ~~kg~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V~r 86 (87)
T 2hzc_A 51 QDKNFAFLEFRSVDETTQAM-AFDGIIF--QGQSLKIRR 86 (87)
T ss_dssp SSSSEEEEEESSHHHHHHHG-GGTTCEE--TTEECEEEC
T ss_pred CCCcEEEEEcCCHHHHHHHH-hcCCCEE--CCeEEEEeC
Confidence 44899999999999999999 9999999 699999974
No 360
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.58 E-value=1.9e-07 Score=64.14 Aligned_cols=70 Identities=14% Similarity=0.122 Sum_probs=64.0
Q ss_pred CCCEEEEeccCCCCCCHHHHHHhhccC-----CCeEEEEEe--CCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEE
Q 026341 64 PTKTLFVINFDPIRTRERDIKRHFEPY-----GNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 134 (240)
Q Consensus 64 ~~~~l~v~nl~~~~~~~~~l~~~f~~~-----G~i~~~~~~--kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 134 (240)
...+|-|-|| |..+++..|+.+++++ |.|..+.+. -+-|+|+|.+...|.+|.-+|+|.+|.|++|.|.-
T Consensus 20 ~~rtiaL~~i-pDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPL-SDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECC-CTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecC-CCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 3678999999 8899999999999999 999999885 47899999999999999999999999999998854
No 361
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.58 E-value=1.5e-08 Score=74.47 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=39.0
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
++++++|||||+|.++++|++|| .||+..| +|+.|.|.++....
T Consensus 81 ~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l--~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 81 PDGRVTGEADVEFATHEEAVAAM-SKDRANM--QHRYIELFLNSTTG 124 (139)
T ss_dssp SSSCSSCCCEEECSHHHHHHHHT-TCCSCSS--SSCCCCCEECCCSC
T ss_pred CCCCCceEEEEEeCCHHHHHHHH-hhCCCEE--CCEEEEEEECCCCC
Confidence 35778999999999999999999 7999988 69999999988654
No 362
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.55 E-value=4e-08 Score=70.82 Aligned_cols=41 Identities=22% Similarity=0.173 Sum_probs=36.1
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 47 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~ 47 (240)
.++++|||||+|.++++|++||+ +++..| +|+.|.|.++..
T Consensus 80 ~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l--~gR~I~V~~a~~ 120 (126)
T 2hgm_A 80 EGKITGEAFVQFASQELAEKALG-KHKERI--GHRYIEVFKSSQ 120 (126)
T ss_dssp SSSSCSEEEEEESSTTHHHHHHT-TTTCCB--TTBCCCCEEECH
T ss_pred CCCCceEEEEEECCHHHHHHHHH-HCCCEE--CCEEEEEEECCH
Confidence 47789999999999999999998 577777 799999988864
No 363
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.52 E-value=3.2e-08 Score=71.12 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=36.9
Q ss_pred ccCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccC
Q 026341 3 ISLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 47 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~ 47 (240)
.+++++|||||+|.++++|++||+. |+..| +|+.|.|..+..
T Consensus 63 ~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l--~gR~i~V~~a~~ 104 (123)
T 2dha_A 63 PDGRPTGDAFVLFACEEYAQNALRK-HKDLL--GKRYIELFRSTA 104 (123)
T ss_dssp TTSCEEEEEEECCSSHHHHHHHHTT-TTEES--SSCEECCEEECH
T ss_pred CCCCEeeEEEEEECCHHHHHHHHHh-CCCee--CCeEEEEEECCH
Confidence 4678899999999999999999995 88887 699999988763
No 364
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.48 E-value=1.3e-07 Score=67.04 Aligned_cols=38 Identities=29% Similarity=0.380 Sum_probs=32.5
Q ss_pred ceEEEEeCChhHHHHHHHhhCCCcccCCCce-----EEEEeccCC
Q 026341 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRR-----LSVEWARGE 48 (240)
Q Consensus 9 G~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~-----l~v~~a~~~ 48 (240)
|||||+|.++++|++||+.|||..| +|++ |.|..+.+.
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g~~~--~gr~~~~~~i~v~~~~~~ 94 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDNTKF--RSHEGETAYIRVKVDGPR 94 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCBC--CCTTSCCCBCEEEECC--
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEE--CCcEeeeEEEEeccCCCC
Confidence 9999999999999999999999999 6888 666666543
No 365
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=3.3e-07 Score=62.49 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=36.1
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCC
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 48 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~ 48 (240)
.|.|||+|.+.++|++|+..|||..| +|++|.|+++.++
T Consensus 54 ~~~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~V~~a~~~ 92 (96)
T 2e44_A 54 TAVVNVTYSSKDQARQALDKLNGFQL--ENFTLKVAYIPDE 92 (96)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCBC--SSCBCEEEECCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEEcCcc
Confidence 45699999999999999999999999 6999999999876
No 366
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.44 E-value=7.2e-08 Score=66.69 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=37.8
Q ss_pred cCCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC
Q 026341 4 SLHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 4 t~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~ 50 (240)
++.++|||||+|.+.++|++|+. ++..| +|+.|.|.++..+..
T Consensus 46 ~g~~~g~afV~f~~~~~a~~Ai~--~~~~~--~g~~l~v~~a~~~~~ 88 (102)
T 2xs2_A 46 TGVSKGYGFVSFYNDVDVQKIVE--SQINF--HGKKLKLGPAIRKQN 88 (102)
T ss_dssp TSCEEEEEEEEESSCCCHHHHTT--CCCEE--TTEECEEEEEEECC-
T ss_pred CCCccceEEEEECCHHHHHHHHh--CCCeE--CCEEEEEEECCcCcc
Confidence 67789999999999999999998 88888 699999999986543
No 367
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=2.2e-07 Score=63.25 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=34.9
Q ss_pred eEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCC
Q 026341 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 50 (240)
Q Consensus 10 ~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~ 50 (240)
||||+|.+.++|++|++ |||..| +|+.|.|+++.....
T Consensus 47 ~afV~f~~~~~a~~ai~-l~g~~~--~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 47 FAIVEMGDVGAREAVLS-QSQHSL--GGHRLRVRPREQKEF 84 (94)
T ss_dssp EEEEEESSHHHHHHHHT-CSCCEE--TTEECCCBCSCCSCC
T ss_pred EEEEEECCHHHHHHHHh-cCCeEE--CCEEEEEEECCcCCC
Confidence 99999999999999999 999999 699999999876544
No 368
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=4.9e-07 Score=63.85 Aligned_cols=38 Identities=16% Similarity=0.229 Sum_probs=31.3
Q ss_pred CCccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEecc
Q 026341 5 LHYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 46 (240)
Q Consensus 5 ~~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~ 46 (240)
++++|||||+|.++++|++||+.|++ + +|+.|.+..+.
T Consensus 49 g~~~G~aFV~f~~~~~a~~Ai~~~~~--~--~G~~~~~~~~~ 86 (114)
T 2dnl_A 49 FPPKGYAFLLFQEESSVQALIDACLE--E--DGKLYLCVSSP 86 (114)
T ss_dssp SCTTSEEEECCSSHHHHHHHHHHSEE--E--TTEEEEEECCS
T ss_pred CCcccEEEEEECCHHHHHHHHHhhhh--c--CCcEEEeccCC
Confidence 68899999999999999999998854 4 57777776544
No 369
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.27 E-value=4.9e-07 Score=64.72 Aligned_cols=43 Identities=14% Similarity=0.017 Sum_probs=35.5
Q ss_pred ccCCccceEEEEeCC----hhH----HHHHHH--hhCCCcccCCCceEEEEeccC
Q 026341 3 ISLHYAGFAFVYFED----DRD----AADAIR--GLDNIPFGYDRRRLSVEWARG 47 (240)
Q Consensus 3 ~t~~~kG~aFV~F~~----~~~----A~~A~~--~l~g~~~~~~g~~l~v~~a~~ 47 (240)
.|+.++|||||+|.+ +++ |.+|+. .|||..| +|++|.|++...
T Consensus 43 ~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I--~Gr~irV~ln~~ 95 (136)
T 2j8a_A 43 NSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFI--MGFKFEVILNKH 95 (136)
T ss_dssp TTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEE--TTEEEEEEECCT
T ss_pred CCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCee--cCcEEEEEECcc
Confidence 488999999999996 444 788988 7899999 799999997763
No 370
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.26 E-value=8.7e-07 Score=59.71 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=31.0
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCC
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 49 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~ 49 (240)
.++|||||+|.++++|++ |++..+.+.|+.|.|.++.++.
T Consensus 46 ~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k~ 85 (89)
T 3d2w_A 46 PFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPKH 85 (89)
T ss_dssp SCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC---
T ss_pred CCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCCC
Confidence 369999999999999883 5676664579999999998654
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.20 E-value=2.3e-06 Score=71.84 Aligned_cols=40 Identities=10% Similarity=0.159 Sum_probs=33.8
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCccc-CCCc--eEEEEecc
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPFG-YDRR--RLSVEWAR 46 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~~-~~g~--~l~v~~a~ 46 (240)
+||||||+|.+.++|++||+.|||..+. ..|+ .|+|.|+.
T Consensus 55 ~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 55 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 6899999999999999999999999873 1245 68888875
No 372
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.14 E-value=1.7e-06 Score=57.87 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=34.1
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCC
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 48 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~ 48 (240)
.+.|||+|.+.++|.+|++ |||..| .|+.|+|+++.+.
T Consensus 49 ~d~~fVtF~d~~sAlaAi~-mnG~~v--~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 49 EDKMWVTFLEGSSALNVLS-LNGKEL--LNRTITIALKSPS 86 (91)
T ss_dssp SSSEEEEESSHHHHHHGGG-GTTCEE--TTEEEEEEECCCS
T ss_pred cCCEEEEECChHHHHHHHh-cCCeEe--CCeEEEEEeCCCC
Confidence 3569999999999999998 999999 6999999998853
No 373
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.97 E-value=6.6e-06 Score=55.00 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=32.3
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCC
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 51 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~ 51 (240)
++|||||+|.+.++|++| ++..+.+.|..|.|.++.++...
T Consensus 41 ~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 41 FRAFAFVTFADDQIAQSL----CGEDLIIKGISVHISNAEPKHNS 81 (88)
T ss_dssp CCSCCEEECSCHHHHHHT----TTCEEEETTEEEEEECCCCCCCC
T ss_pred CCCEEEEEECCHHHHHHH----hcCCceeCCEEEEEEecCCCCCC
Confidence 689999999999999754 44444447999999999876543
No 374
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.90 E-value=1.4e-05 Score=54.65 Aligned_cols=73 Identities=10% Similarity=0.113 Sum_probs=60.9
Q ss_pred CCEEEEeccCCCCC-C----HHHHHHhhccCCCeEEEEEeCC--eEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeec
Q 026341 65 TKTLFVINFDPIRT-R----ERDIKRHFEPYGNVLHVRIRRN--FAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 137 (240)
Q Consensus 65 ~~~l~v~nl~~~~~-~----~~~l~~~f~~~G~i~~~~~~kg--~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 137 (240)
.++|+|.|| +..+ . .+.++++|..|+++....+.+. -..|.|.+.++|.+|-..||+..+.|..|+|-++.+
T Consensus 5 pntLiitnl-~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVA-NDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECC-CGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecC-CHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 467999999 5322 2 2678999999998887777654 478999999999999999999999999999999884
Q ss_pred C
Q 026341 138 D 138 (240)
Q Consensus 138 ~ 138 (240)
.
T Consensus 84 ~ 84 (104)
T 1wey_A 84 L 84 (104)
T ss_dssp S
T ss_pred C
Confidence 4
No 375
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=0.0003 Score=47.87 Aligned_cols=75 Identities=17% Similarity=0.137 Sum_probs=62.0
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhcc---C--CCeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeec
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEP---Y--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 137 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~---~--G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 137 (240)
....+|.|.|| |..+.++.|.-.|+. - |+|..+....+-|+|+|.+.+.|+..|+. ....|++..|.|.-..+
T Consensus 6 ~~~~~I~V~~l-Pp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 6 SGGVAVEVRGL-PPAVPDELLTLYFENRRRSGGGPVLSWQRLGCGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCCCEEEEESC-CTTSCHHHHHHHHHCTTTTCCCCEEEEEEETTEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCC
T ss_pred cCccEEEEECC-CCCCChhHheEEEeCCCcCCCceeeEEEEcCCcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCC
Confidence 34689999999 778999999999986 2 58999998889999999999999999873 36788899999866544
Q ss_pred CC
Q 026341 138 DD 139 (240)
Q Consensus 138 ~~ 139 (240)
..
T Consensus 84 ~~ 85 (104)
T 2dhx_A 84 RA 85 (104)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 376
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.84 E-value=8.6e-05 Score=49.94 Aligned_cols=55 Identities=25% Similarity=0.443 Sum_probs=48.6
Q ss_pred CCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEecCHHHHHHHHHhcC
Q 026341 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121 (240)
Q Consensus 65 ~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~ 121 (240)
.++++| ++ |..+...||.++|+.||.|.--+|.-..|||.|.+.+.|..|+..+.
T Consensus 16 ~HVf~l-~F-P~ewKt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TF-PKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-EC-CTTCCHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eC-ChhhhhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 456667 99 88999999999999999887777889999999999999999999763
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.82 E-value=1.6e-05 Score=53.50 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=31.2
Q ss_pred eEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEecc
Q 026341 10 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 46 (240)
Q Consensus 10 ~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~ 46 (240)
-+||+|.+.++|.+||+ |||..| .|+.|+|++..
T Consensus 60 ~~fVtF~d~~sAl~AI~-ldG~~v--~Gr~L~V~~k~ 93 (95)
T 1ufw_A 60 QMLVTFADSHSALSVLD-VDGMKV--KGRAVKISGPS 93 (95)
T ss_dssp EEEEECSCSHHHHHHHH-GGGSEE--TTEEEEEECCC
T ss_pred cEEEEEcChHHHHHHHh-cCCeee--CCeEEEEeccC
Confidence 39999999999999999 999999 69999998754
No 378
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.68 E-value=6.3e-05 Score=50.76 Aligned_cols=54 Identities=26% Similarity=0.452 Sum_probs=47.4
Q ss_pred CEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEecCHHHHHHHHHhcC
Q 026341 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 121 (240)
Q Consensus 66 ~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~ 121 (240)
.+++| ++ |..+...||.++|+.||.|.--+|.-..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~F-P~ewKt~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TF-PKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-EC-CTTCCHHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eC-ChhhhhHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 45666 89 88999999999999999777777788999999999999999999764
No 379
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.58 E-value=0.00046 Score=46.27 Aligned_cols=70 Identities=17% Similarity=0.253 Sum_probs=56.3
Q ss_pred CEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe----------CCeEEEEecCHHHHHHHHHhcCCCcccC-----cEE
Q 026341 66 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR----------RNFAFVQFETQEEATKALESTDRSKLVD-----RVI 130 (240)
Q Consensus 66 ~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~----------kg~afV~f~~~~~a~~A~~~l~g~~~~g-----~~l 130 (240)
+.|.|.+| |..+|++++.+.+.....+....+. -.-|||.|.+.+++....+.++|..+.+ .+.
T Consensus 2 ~KvVIRrL-PP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a 80 (91)
T 1uw4_A 2 SKVVIRRL-PPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPA 80 (91)
T ss_dssp CEEEEEEE-CTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEEC
T ss_pred cEEEEeCC-CCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeee
Confidence 47899999 7799999999999998877666553 2469999999999999999999987753 233
Q ss_pred EEEEee
Q 026341 131 SVEYAL 136 (240)
Q Consensus 131 ~v~~a~ 136 (240)
.|++|-
T Consensus 81 ~VE~AP 86 (91)
T 1uw4_A 81 IVEFAP 86 (91)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 566654
No 380
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=97.53 E-value=5.8e-05 Score=60.16 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=26.7
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCccc
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIPFG 34 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~~~ 34 (240)
.++|||||+|.+.++|+.|++.|+|..|+
T Consensus 177 ~~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 177 ESKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp GGGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 46999999999999999999999999883
No 381
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.53 E-value=0.00035 Score=49.04 Aligned_cols=68 Identities=25% Similarity=0.399 Sum_probs=56.2
Q ss_pred CCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--CCeEEEEecCHHHHHHHHHhcCCCcccC-cEEEEEEe
Q 026341 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLVD-RVISVEYA 135 (240)
Q Consensus 65 ~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--kg~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a 135 (240)
..-|.|.++ |.. ....|...|.+||+|.....+ ..+..|.|++..+|++||. .||..|.| ..|-|...
T Consensus 24 ~~wVtVFGF-p~~-~~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGF-PQA-SASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGEEEEECC-CGG-GHHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCEEEEECC-CHH-HHHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 567888899 543 467889999999999998884 4699999999999999998 49999985 55666664
No 382
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.01 E-value=0.00095 Score=47.53 Aligned_cols=69 Identities=14% Similarity=0.321 Sum_probs=53.9
Q ss_pred CCEEEEeccCCCCCCHHHHHHhhccCCCeEE-EEE---------------------eCCeEEEEecCHHHHHHHHHhcCC
Q 026341 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLH-VRI---------------------RRNFAFVQFETQEEATKALESTDR 122 (240)
Q Consensus 65 ~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~-~~~---------------------~kg~afV~f~~~~~a~~A~~~l~g 122 (240)
..-|.|.++ |. .....|.+.|++||.|.. +.+ -..+..|+|++..+|++||. .||
T Consensus 7 e~~VtVFGF-p~-~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 7 ELAILVFGY-PE-TMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp -CEEEEECC-CG-GGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred ceEEEEEec-CH-HHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 456778888 64 446778889999999876 211 14688999999999999998 599
Q ss_pred CcccCcEEEEEEee
Q 026341 123 SKLVDRVISVEYAL 136 (240)
Q Consensus 123 ~~~~g~~l~v~~a~ 136 (240)
..|.|.-|-|....
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999877787764
No 383
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.88 E-value=0.0028 Score=42.70 Aligned_cols=71 Identities=13% Similarity=0.199 Sum_probs=53.9
Q ss_pred CCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe----------CCeEEEEecCHHHHHHHHHhcCCCcccC-----cE
Q 026341 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR----------RNFAFVQFETQEEATKALESTDRSKLVD-----RV 129 (240)
Q Consensus 65 ~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~----------kg~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 129 (240)
...|.|..| |..+|++++.+.+..+-++....+. -.-|||.|.+.++.....+.++|..+.+ .+
T Consensus 9 ~~KvVIRrL-PP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 9 SHMVVIRRL-PPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCEEEECC-CSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred ceeEEEeCC-CCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 457899999 7799999999888876554333321 2469999999999999999999987643 34
Q ss_pred EEEEEee
Q 026341 130 ISVEYAL 136 (240)
Q Consensus 130 l~v~~a~ 136 (240)
..|++|-
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 5566664
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.0022 Score=44.07 Aligned_cols=35 Identities=20% Similarity=0.194 Sum_probs=31.1
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEe
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW 44 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~ 44 (240)
-|=|+|+|.|...|-+|.-.|+|..| +|++|.|.-
T Consensus 62 H~GAivef~d~~~AgKasLaL~G~ef--~gr~Lr~gT 96 (117)
T 2l9w_A 62 FNGAIIIFRDSKFAAKMLMILNGSQF--QGKVIRSGT 96 (117)
T ss_dssp TTEEEEECSCHHHHHHHHHHHSSEEE--TTEEEEEEC
T ss_pred CCceEEEEccchhhHHHHhhcCCeee--cCeEEEecC
Confidence 35599999999999999999999999 799998863
No 385
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.08 E-value=0.011 Score=41.76 Aligned_cols=37 Identities=14% Similarity=0.311 Sum_probs=29.8
Q ss_pred cceEEEEeCC-hhHHHHHHHhhC--CCcccCCCceEEEEecc
Q 026341 8 AGFAFVYFED-DRDAADAIRGLD--NIPFGYDRRRLSVEWAR 46 (240)
Q Consensus 8 kG~aFV~F~~-~~~A~~A~~~l~--g~~~~~~g~~l~v~~a~ 46 (240)
.-.|||+|.+ +++|.+|+..|| +..| .|..++++...
T Consensus 55 ~~tgfVrf~~~~~~A~~av~~ln~~~~~i--~g~~~~~evL~ 94 (121)
T 1owx_A 55 AKEGIILFKEKAKEALGKAKDANNGNLQL--RNKEVTWEVLE 94 (121)
T ss_dssp CSEEEEEESSCHHHHHHHHHHTTTSCBCT--TSSSEEEEECC
T ss_pred CCEEEEEECCChHHHHHHHHHhhcCCcEE--eCcEEEEEECC
Confidence 3479999999 799999999996 4455 68888887665
No 386
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.62 E-value=0.0054 Score=53.30 Aligned_cols=53 Identities=15% Similarity=0.269 Sum_probs=39.5
Q ss_pred CCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe---CCeEEEEecCHHHHHHHHHh
Q 026341 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---RNFAFVQFETQEEATKALES 119 (240)
Q Consensus 65 ~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~---kg~afV~f~~~~~a~~A~~~ 119 (240)
.+.|+|. + +..+++.+|.+.|++||+|..+.+- .-||+|||.+.+++..++..
T Consensus 53 ~rsv~v~-~-~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-C-PEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-E-CCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-c-CCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 4789997 6 6689999999999999999999884 34999999999999877653
No 387
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.53 E-value=0.0023 Score=46.84 Aligned_cols=38 Identities=11% Similarity=0.014 Sum_probs=34.5
Q ss_pred eCCeEEEEecCHHHHHHHHHhc-CCCcccCcEEEEEEeec
Q 026341 99 RRNFAFVQFETQEEATKALEST-DRSKLVDRVISVEYALK 137 (240)
Q Consensus 99 ~kg~afV~f~~~~~a~~A~~~l-~g~~~~g~~l~v~~a~~ 137 (240)
.+|+++|+|.+.++|++|++.| ||..++| .|.+.++..
T Consensus 12 l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 3689999999999999999999 9999999 999987754
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.12 E-value=0.022 Score=38.85 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=32.7
Q ss_pred EEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCC
Q 026341 11 AFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 48 (240)
Q Consensus 11 aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~ 48 (240)
..|.|.++++|.+|...|++..| .|+.|+|-|+.+.
T Consensus 49 irv~F~~~~~A~~AR~~Lh~~~f--~g~~~r~YFgq~~ 84 (104)
T 1wey_A 49 VRINFSNPLSAADARLRLHKTEF--LGKEMKLYFAQTL 84 (104)
T ss_dssp EEEECSSTTHHHHHHHTSTTSEE--TTEECEEECCCCS
T ss_pred EEEEeCChHHHHHHHHHhcccee--cCceeEEEecCCC
Confidence 47899999999999999999999 5999999999843
No 389
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.38 E-value=0.21 Score=44.03 Aligned_cols=56 Identities=25% Similarity=0.418 Sum_probs=47.9
Q ss_pred CCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEecCHHHHHHHHHhcCC
Q 026341 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDR 122 (240)
Q Consensus 65 ~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g 122 (240)
...++|+ + |..+...+|.++|+.||.|.-.+|....|||.|.+.+.|..++..+..
T Consensus 440 ~~vl~v~-f-~~~~~~~~i~~~fs~fg~v~V~widdt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-F-PKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-C-CTTCCHHHHHHHGGGGCCCEEEECSSSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-C-CCCCCHHHHHHHHHhcCCEEEEEEcCCeEEEEECCHHHHHHHHHHHHh
Confidence 3567776 6 667889999999999998777777889999999999999999998853
No 390
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=93.05 E-value=1 Score=29.49 Aligned_cols=57 Identities=16% Similarity=0.242 Sum_probs=48.8
Q ss_pred CCCCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEecCHHHHHHHHHhc
Q 026341 63 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALEST 120 (240)
Q Consensus 63 ~~~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l 120 (240)
..++.|.|-|+ |..+-..++.-.....|---+|....|.|+|.|.+.++..-|++.|
T Consensus 10 kqnclikiini-pqgtlkaevvlavrhlgyefycdyidgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINI-PQGTLKAEVVLAVRHLGYEFYCDYIDGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECC-CTTCCHHHHHHHHHTTCCCEEEEECSSCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEec-CCCceeeeeEEeehhcCeeEeeeeecCeeEEEecCChHHHHHHHHH
Confidence 34788899999 8788788877777778877889999999999999999999999876
No 391
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=92.28 E-value=0.33 Score=30.79 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=42.0
Q ss_pred CCCCHHHHHHhhccCC-----CeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEee
Q 026341 76 IRTRERDIKRHFEPYG-----NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136 (240)
Q Consensus 76 ~~~~~~~l~~~f~~~G-----~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 136 (240)
..+...+|..++..-+ .|-.+.+...|.||+... +.|..++..|++..+.|+.+.|+.++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECSSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeCCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 3566777777776543 567788889999999875 45778899999999999999988764
No 392
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.20 E-value=0.22 Score=33.76 Aligned_cols=51 Identities=18% Similarity=0.194 Sum_probs=35.3
Q ss_pred ceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCEEEEeccCCCCC
Q 026341 9 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRT 78 (240)
Q Consensus 9 G~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ 78 (240)
+-|+|+|.+.+.|+..++ .....| .+..|.|....+. ...+|++.+| +..+
T Consensus 48 ~~AvItF~d~~va~rVL~-k~~H~L--~~~~LsV~P~~~~---------------~~~r~ll~gl-~~~t 98 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLA-QADHEL--HGAQLSLRPAPPR---------------APARLLLQGL-PPGT 98 (104)
T ss_dssp TEEEEEESSHHHHHHHHT-CSCCBS--SSSBCEEEECCCC---------------CCCCCCCCSC-CCCC
T ss_pred CcEEEEEcChHHHHHHhc-CCccee--cCeEEEEEcCCCC---------------CcceEeeecC-CCCC
Confidence 679999999999998886 224455 5778888654432 2456777888 4444
No 393
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=83.71 E-value=1.2 Score=31.47 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=29.8
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEecc
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 46 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~ 46 (240)
.++--|+|.+..+|.+|+. .||.+| +|..|-|.+..
T Consensus 62 ~NWikItYds~~~A~rAL~-~NG~ii--~G~mIGV~Py~ 97 (132)
T 3p3d_A 62 NSWTKITYDNPASAVDALL-ENGAVF--NGVLLGVIPYT 97 (132)
T ss_dssp TTEEEEEBSSHHHHHHHHT-TTTCEE--TTEECEEEECC
T ss_pred CcEEEEEcCCHHHHHHHHH-hCCeEe--CcEEEEEEECC
Confidence 4677999999999999998 899998 57766666554
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=79.40 E-value=2.5 Score=29.35 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=28.8
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEecc
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 46 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~ 46 (240)
..+-.|.|.+..+|++||. .||+.|. ++-.|=|....
T Consensus 59 ~NWihI~Y~s~~~A~rAL~-kNG~ii~-g~~mIGV~p~~ 95 (119)
T 1wwh_A 59 GNWMHIRYQSKLQARKALS-KDGRIFG-ESIMIGVKPCI 95 (119)
T ss_dssp SSEEEEEESSHHHHHHHHT-TTTCEET-TTEECEEEECC
T ss_pred CCeEEEEeCCHHHHHHHHH-hCCeEec-CCEEEEEEECC
Confidence 5688999999999999998 7999983 24555565543
No 395
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=77.22 E-value=2.1 Score=26.88 Aligned_cols=36 Identities=14% Similarity=0.274 Sum_probs=27.5
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEecc
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 46 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~a~ 46 (240)
-.|.||+-.... |+.++..|++..+ .|+++.|+.+.
T Consensus 40 d~~s~v~v~~~~-~~~~~~~l~~~~i--~g~~~~v~~~~ 75 (76)
T 2g0c_A 40 DNASYVEILNGK-GPHVLKVMKNTTV--KGKQLKVNKAN 75 (76)
T ss_dssp SSCEEEEECTTC-HHHHHHHHTTCCC-----CCCEEECC
T ss_pred CCcEEEEECHHH-HHHHHHHhccccC--cCceEEEEECC
Confidence 468999998775 8899999999888 59999888654
No 396
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=73.27 E-value=0.86 Score=33.11 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=21.9
Q ss_pred HHHHHhhccCCCeEEEEEeCCeEEEEec
Q 026341 81 RDIKRHFEPYGNVLHVRIRRNFAFVQFE 108 (240)
Q Consensus 81 ~~l~~~f~~~G~i~~~~~~kg~afV~f~ 108 (240)
+|+.++|...|.|+.....+||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETTTTEEEEEEE
T ss_pred CcccccccceeEEEEEECCCCeeEEeeC
Confidence 5677889999999999999999999976
No 397
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=67.48 E-value=4.5 Score=26.64 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=24.1
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCccc
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFG 34 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~ 34 (240)
-.-|+|.|.+.+++....+.++|..|.
T Consensus 45 ~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 45 YARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred ceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 356999999999999999999999884
No 398
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=64.06 E-value=5.3 Score=26.69 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=18.8
Q ss_pred ceEEEEeCChhHHHHHHHhhC
Q 026341 9 GFAFVYFEDDRDAADAIRGLD 29 (240)
Q Consensus 9 G~aFV~F~~~~~A~~A~~~l~ 29 (240)
.-|||.|.+++.|..|+..++
T Consensus 50 TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 50 TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEEecCHHHHHHHHHhcc
Confidence 469999999999999999775
No 399
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=55.77 E-value=34 Score=22.24 Aligned_cols=32 Identities=16% Similarity=0.363 Sum_probs=25.3
Q ss_pred CeEEEEEe---CCeEEEEecCHHHHHHHHHhcCCC
Q 026341 92 NVLHVRIR---RNFAFVQFETQEEATKALESTDRS 123 (240)
Q Consensus 92 ~i~~~~~~---kg~afV~f~~~~~a~~A~~~l~g~ 123 (240)
.|..+.++ .||.||++...++...++..+.|.
T Consensus 39 ~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 39 DVYSILASESLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp CEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cEEEEEEecccCCEEEEEEecchhHHHHHHCCCCc
Confidence 36666664 799999999999998888776653
No 400
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.98 E-value=6.4 Score=24.06 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=16.2
Q ss_pred CCCeEEEEEeCCeEEEEecC
Q 026341 90 YGNVLHVRIRRNFAFVQFET 109 (240)
Q Consensus 90 ~G~i~~~~~~kg~afV~f~~ 109 (240)
.|+|..|...+..|||.|++
T Consensus 27 lGtV~kV~~~~~~ClV~FeD 46 (68)
T 2e5p_A 27 LGTIKKVDSAREVCLVQFED 46 (68)
T ss_dssp EEEEEEEETTTTEEEEEETT
T ss_pred EeEEEEEecCCcEEEEEEcc
Confidence 36777777778999999986
No 401
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=54.79 E-value=7.4 Score=25.93 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=23.5
Q ss_pred ceEEEEeCChhHHHHHHHhhCCCccc
Q 026341 9 GFAFVYFEDDRDAADAIRGLDNIPFG 34 (240)
Q Consensus 9 G~aFV~F~~~~~A~~A~~~l~g~~~~ 34 (240)
.-|+|.|.+.++.....+.++|..|.
T Consensus 54 SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 54 SRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred eEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 56899999999999999999999884
No 402
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=54.22 E-value=5.7 Score=26.62 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=18.7
Q ss_pred ceEEEEeCChhHHHHHHHhhC
Q 026341 9 GFAFVYFEDDRDAADAIRGLD 29 (240)
Q Consensus 9 G~aFV~F~~~~~A~~A~~~l~ 29 (240)
.-|||.|.+++.|..|+..+.
T Consensus 40 TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 40 TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEEecCHHHHHHHHHhcc
Confidence 469999999999999999775
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=53.31 E-value=21 Score=23.24 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=25.6
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEe
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW 44 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~ 44 (240)
-|.|.|.|.+.++...|+.+|-+.. ..+|.++.
T Consensus 46 dgqamirfqnsdeqrlaiqkllnhn----nnklqiei 78 (129)
T 4eyt_A 46 DGQAMIRFQNSDEQRLAIQKLLNHN----NNKLQIEI 78 (129)
T ss_dssp SSCEEEEESSHHHHHHHHHHHEETT----TTEEEEEE
T ss_pred cCeeEEEecCChHHHHHHHHHHhcC----CCEEEEEE
Confidence 5789999999999999998775553 44666664
No 404
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=52.58 E-value=10 Score=24.79 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=20.2
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCC
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNI 31 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~ 31 (240)
.+||-||++...++...++..+.|.
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cCCEEEEEEecchhHHHHHHCCCCc
Confidence 5899999999998888887755554
No 405
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=50.67 E-value=8.1 Score=24.31 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=17.0
Q ss_pred CCCeEEEEEeCCeEEEEecC
Q 026341 90 YGNVLHVRIRRNFAFVQFET 109 (240)
Q Consensus 90 ~G~i~~~~~~kg~afV~f~~ 109 (240)
.|.|..|...+..|+|.|++
T Consensus 44 LGTI~kV~~~~e~ClV~F~D 63 (79)
T 2m0o_A 44 LGTIKKVDSAREVCLVQFED 63 (79)
T ss_dssp EEEEEEEETTTTEEEEEETT
T ss_pred eEEEEEeccCCCEEEEEEcC
Confidence 37888888889999999986
No 406
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=46.51 E-value=10 Score=23.17 Aligned_cols=19 Identities=26% Similarity=0.593 Sum_probs=15.4
Q ss_pred CCeEEEEEeCCeEEEEecC
Q 026341 91 GNVLHVRIRRNFAFVQFET 109 (240)
Q Consensus 91 G~i~~~~~~kg~afV~f~~ 109 (240)
|.|..|.-.++.|+|.|++
T Consensus 32 gtI~~V~~~~gtC~V~F~D 50 (66)
T 2eqj_A 32 GTIKKINILKQSCFIIFED 50 (66)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred eEEEEEccCCcEEEEEEcc
Confidence 5677777678999999986
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=45.46 E-value=37 Score=25.07 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=29.2
Q ss_pred CEEEEeccCCC---------CCCHHHHHHhh--ccCCCeEEEEE-----eCCeEEEEecCH
Q 026341 66 KTLFVINFDPI---------RTRERDIKRHF--EPYGNVLHVRI-----RRNFAFVQFETQ 110 (240)
Q Consensus 66 ~~l~v~nl~~~---------~~~~~~l~~~f--~~~G~i~~~~~-----~kg~afV~f~~~ 110 (240)
.+++|-|+ +. .....+|++.| ..|.++.-..+ ..|+|+|+|..-
T Consensus 13 wmgIl~N~-~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 13 WKGIVVNI-PTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKD 72 (172)
T ss_dssp CEEEEECC-CCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSS
T ss_pred CEEEEEec-cccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCC
Confidence 34556666 43 23457899966 89987665444 356899999853
No 408
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=42.77 E-value=16 Score=24.61 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=22.3
Q ss_pred CccceEEEEeCChhHHHHHHHhhCCCc
Q 026341 6 HYAGFAFVYFEDDRDAADAIRGLDNIP 32 (240)
Q Consensus 6 ~~kG~aFV~F~~~~~A~~A~~~l~g~~ 32 (240)
..+||-|||=.++.++..|+..+.+..
T Consensus 49 ~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 49 HVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp TCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred CCceEEEEEeCCHHHHHHHHhccccee
Confidence 359999999999999999988665543
No 409
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.75 E-value=16 Score=22.00 Aligned_cols=14 Identities=29% Similarity=0.358 Sum_probs=10.9
Q ss_pred CccceEEEEeCChh
Q 026341 6 HYAGFAFVYFEDDR 19 (240)
Q Consensus 6 ~~kG~aFV~F~~~~ 19 (240)
..++.|||.|+|..
T Consensus 33 ~~~~~ClV~FeD~s 46 (63)
T 2e5q_A 33 SSKQSCLVTFEDNS 46 (63)
T ss_dssp STTSEEEEEETTSC
T ss_pred cCCCEEEEEEccCc
Confidence 34789999998854
No 410
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=38.21 E-value=17 Score=21.51 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=15.0
Q ss_pred CCeEEEEEeCCeEEEEecC
Q 026341 91 GNVLHVRIRRNFAFVQFET 109 (240)
Q Consensus 91 G~i~~~~~~kg~afV~f~~ 109 (240)
|+|..|...+..|+|.|++
T Consensus 22 GtI~~V~~~~~~clV~F~D 40 (58)
T 4hcz_A 22 GTIKKVDSAREVCLVQFED 40 (58)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred EEEEEEecCCCEEEEEEcC
Confidence 6677776677899999986
No 411
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=35.02 E-value=35 Score=22.72 Aligned_cols=62 Identities=19% Similarity=0.327 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHhh-ccCCCeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEeec
Q 026341 75 PIRTRERDIKRHF-EPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 137 (240)
Q Consensus 75 ~~~~~~~~l~~~f-~~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 137 (240)
+..+.-++|.... ..||.-..+.+...-..|-..+.++..+||+.|+... .-+.|+|-+..+
T Consensus 25 ~RPv~f~eL~~Kv~~~fGq~ldL~y~n~EllIpl~sQeDLDkaIellDrss-~~kSLrIlL~~~ 87 (103)
T 2cu1_A 25 PRPVKLEDLRSKAKIAFGQSMDLHYTNNELVIPLTTQDDLDKAVELLDRSI-HMKSLKILLVIN 87 (103)
T ss_dssp ESSCCHHHHHHHHHHHHSSCEEEEECSSSSCEECCSHHHHHHHHHHHHHCS-SCCSEEEEEEEC
T ss_pred cCCccHHHHHHHHHHHhCCeeeEEEecceEEEeccCHHHHHHHHHHHccCC-cccceEEEEecC
Confidence 4557777776655 4689888888888888999999999999999886542 223344444333
No 412
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=32.26 E-value=86 Score=20.59 Aligned_cols=49 Identities=24% Similarity=0.430 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHhhc-cCCCeEEEEEeCCeEEEEecCHHHHHHHHHhcCCC
Q 026341 75 PIRTRERDIKRHFE-PYGNVLHVRIRRNFAFVQFETQEEATKALESTDRS 123 (240)
Q Consensus 75 ~~~~~~~~l~~~f~-~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~ 123 (240)
+..+.-++|++... .||....+.+...--.|-..+.++..+||+.|+..
T Consensus 37 ~RPv~f~el~~kv~~afGq~ldl~y~nnEL~iPL~~Q~DLDkAvelLDrs 86 (100)
T 2npt_B 37 PRPVKLEDLRSKAKIAFGQSMDLHYTNNELVIPLTTQDDLDKAVELLDRS 86 (100)
T ss_dssp CSSCCHHHHHHHHHHHHTSCEEEEEEETTEEEECCCHHHHHHHHHHHHHC
T ss_pred CCCccHHHHHHHHHHHhCCeeeeEEecceeEEecccHHHHHHHHHHhccC
Confidence 45577788776654 68988888888777889999999999999987543
No 413
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=31.76 E-value=81 Score=18.55 Aligned_cols=53 Identities=13% Similarity=0.105 Sum_probs=36.7
Q ss_pred CCEEEEeccCCCCCCHHHHHHhhccCCCeEEEEEe--CCeEEEEecCHHHHHHHHHh
Q 026341 65 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALES 119 (240)
Q Consensus 65 ~~~l~v~nl~~~~~~~~~l~~~f~~~G~i~~~~~~--kg~afV~f~~~~~a~~A~~~ 119 (240)
..++.|.++ .-..=...|...+.. ..|..+.+. .+.+.|+|.+.++...+|+.
T Consensus 6 ~~~~~v~gm-~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGL-SCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESS-BCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCC-CCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECCHHHHHHHHHH
Confidence 356788888 333335778888888 777777664 56778888866666777764
No 414
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=31.53 E-value=95 Score=20.12 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHhh-ccCCCeEEEEEeCCeEEEEecCHHHHHHHHHhcCCCcccCcEEEEEEee
Q 026341 75 PIRTRERDIKRHF-EPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 136 (240)
Q Consensus 75 ~~~~~~~~l~~~f-~~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 136 (240)
+..+.-++|++.. ..||....+.+...--.|-..+.++..+|++.|+... .-+.|.|-+..
T Consensus 21 ~RPvkf~dl~qkv~~afGq~ldl~y~nnEL~iPL~~Q~DLDkAvelLDrs~-~mkSLRIlL~~ 82 (94)
T 2jrh_A 21 SRPVKYEDVEHKVTTVFGQPLDLHYMNNELSILLKNQDDLDKAIDILDRSS-SMKSLRILLLS 82 (94)
T ss_dssp CSSCCHHHHHHHHHHHHCSSEEEEEECSSCEEECCSHHHHHHHHHHHHHST-TTTEEEEEEEE
T ss_pred CCCccHHHHHHHHHHHhCCeeeeEEecceeEEeccCHHHHHHHHHHhccCc-cccceEEEEEc
Confidence 4457777776655 4689888888888888899999999999999875432 22344444443
No 415
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=29.19 E-value=37 Score=24.24 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=22.1
Q ss_pred ccceEEEEeCChhHHHHHHHhhCCCc
Q 026341 7 YAGFAFVYFEDDRDAADAIRGLDNIP 32 (240)
Q Consensus 7 ~kG~aFV~F~~~~~A~~A~~~l~g~~ 32 (240)
.+||-||++...++.-.++..+.|..
T Consensus 42 fPGYVfVe~~~~~~~~~~v~~t~gV~ 67 (152)
T 3p8b_B 42 VKGYIFVEAPNKGVVDEAIRGIRHAR 67 (152)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCTTEE
T ss_pred CCcEEEEEEEchHHHHHHHhCCCCEE
Confidence 48999999999988888888777753
No 416
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=28.39 E-value=94 Score=20.70 Aligned_cols=49 Identities=20% Similarity=0.333 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHhhc-cCCCeEEEEEeCCeEEEEecCHHHHHHHHHhcCCC
Q 026341 75 PIRTRERDIKRHFE-PYGNVLHVRIRRNFAFVQFETQEEATKALESTDRS 123 (240)
Q Consensus 75 ~~~~~~~~l~~~f~-~~G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~g~ 123 (240)
+..+.-++|++... .||....+.+...--.|-..+.++..+|++.|+..
T Consensus 48 ~RPvkf~dl~qkv~~afGq~ldl~y~nnEL~IPL~~Q~DLDkAvelLDrs 97 (111)
T 2c60_A 48 SRPVKYEDVEHKVTTVFGQPLDLHYMNNELSILLKNQDDLDKAIDILDRS 97 (111)
T ss_dssp CSSCCHHHHHHHHHHHHSSCCEEEEECSSCEEECCSHHHHHHHHHHHHHC
T ss_pred CCCccHHHHHHHHHHHhCCeeeeEEecceEEEecccHHHHHHHHHHhccC
Confidence 45577788766554 68988888888888889999999999999987543
No 417
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157} SCOP: c.38.1.0
Probab=27.12 E-value=1.7e+02 Score=21.31 Aligned_cols=19 Identities=5% Similarity=0.088 Sum_probs=14.5
Q ss_pred cceEEEEeCChhHHHHHHH
Q 026341 8 AGFAFVYFEDDRDAADAIR 26 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~ 26 (240)
+.-.||-|+++++|.++++
T Consensus 81 ~~~v~il~k~p~d~~~lve 99 (168)
T 3eye_A 81 HQKIFLICRTPQTVRKLVE 99 (168)
T ss_dssp TCCEEEEESSHHHHHHHHH
T ss_pred CceEEEEECCHHHHHHHHH
Confidence 3457888888888888876
No 418
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=27.08 E-value=32 Score=21.41 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=15.3
Q ss_pred CCCeEEEEEeCCeEEEEecC
Q 026341 90 YGNVLHVRIRRNFAFVQFET 109 (240)
Q Consensus 90 ~G~i~~~~~~kg~afV~f~~ 109 (240)
.|.|+.....+||+||+-.+
T Consensus 4 ~G~Vkwfn~~KGfGFI~~~d 23 (74)
T 2k5n_A 4 NGTITTWFKDKGFGFIKDEN 23 (74)
T ss_dssp EEEEEEEETTTTEEEEEESS
T ss_pred ceEEEEEECCCCeEEEecCC
Confidence 46777777789999998664
No 419
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=26.20 E-value=37 Score=20.84 Aligned_cols=18 Identities=17% Similarity=0.503 Sum_probs=13.7
Q ss_pred CCeEEEEEeCCeEEEEecCH
Q 026341 91 GNVLHVRIRRNFAFVQFETQ 110 (240)
Q Consensus 91 G~i~~~~~~kg~afV~f~~~ 110 (240)
|+| |...+..|||.|++.
T Consensus 34 GtI--Vd~~~~~ClV~FeD~ 51 (69)
T 2xk0_A 34 GTI--IDQTSDQYLIRFDDQ 51 (69)
T ss_dssp EEE--EEECSSCEEEEETTC
T ss_pred EEE--EecCCceEEEEecCC
Confidence 556 556789999999873
No 420
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=26.02 E-value=20 Score=22.73 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=9.3
Q ss_pred ccceEEEEeCCh
Q 026341 7 YAGFAFVYFEDD 18 (240)
Q Consensus 7 ~kG~aFV~F~~~ 18 (240)
.||||||+-.+-
T Consensus 17 ~KGfGFI~~ddg 28 (79)
T 2ytv_A 17 KDQFGFINYEVG 28 (79)
T ss_dssp CSSEEEESCCCS
T ss_pred cccceeEeCCCC
Confidence 399999987653
No 421
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=25.01 E-value=36 Score=21.18 Aligned_cols=47 Identities=11% Similarity=0.144 Sum_probs=25.6
Q ss_pred CCeEEEEEeCCeEEEEecCHHHHHHHHHhcC---C--CcccCcEEEEEEeec
Q 026341 91 GNVLHVRIRRNFAFVQFETQEEATKALESTD---R--SKLVDRVISVEYALK 137 (240)
Q Consensus 91 G~i~~~~~~kg~afV~f~~~~~a~~A~~~l~---g--~~~~g~~l~v~~a~~ 137 (240)
|.|+.....+||+||+-.+-++.--=+..+. | ..-.|..|..++...
T Consensus 3 G~Vkwfn~~KGfGFI~~~dG~DvFvH~s~i~~~~g~~~l~~G~~V~F~~~~g 54 (74)
T 2kcm_A 3 GKVVSYLAAKKYGFIQGDDGESYFLHFSELLDKKDEGKLVKGSMVHFDPTPT 54 (74)
T ss_dssp EEEEEEETTTTEEEEEETTSCEECCCGGGSSCSGGGTTCCTTSEEEEEEECT
T ss_pred EEEEEEECCCCEEEEecCCCceEEEEhhhcccCCCCCCCCCCCEEEEEEEEC
Confidence 5666666679999998765322111112222 1 233467766666543
No 422
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=24.95 E-value=24 Score=22.93 Aligned_cols=10 Identities=40% Similarity=0.793 Sum_probs=8.9
Q ss_pred cceEEEEeCC
Q 026341 8 AGFAFVYFED 17 (240)
Q Consensus 8 kG~aFV~F~~ 17 (240)
||||||+-.+
T Consensus 18 KGfGFI~~~~ 27 (89)
T 1x65_A 18 DGFGFIKCVD 27 (89)
T ss_dssp TTBCEEEESS
T ss_pred CCcceeecCC
Confidence 9999999866
No 423
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=24.71 E-value=30 Score=21.39 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=15.1
Q ss_pred CCCeEEEEEeCCeEEEEecC
Q 026341 90 YGNVLHVRIRRNFAFVQFET 109 (240)
Q Consensus 90 ~G~i~~~~~~kg~afV~f~~ 109 (240)
.|.|+.....+||+||+-.+
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~ 22 (73)
T 3a0j_A 3 KGRVKWFNAEKGYGFIEREG 22 (73)
T ss_dssp EEEEEEEETTTTEEEEECTT
T ss_pred CEEEEEEECCCCEEEEecCC
Confidence 36677777789999998654
No 424
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=24.33 E-value=1.7e+02 Score=21.73 Aligned_cols=31 Identities=13% Similarity=0.301 Sum_probs=21.1
Q ss_pred cceEEEEeCChhHHHHHHHhhCCCcccCCCceEEEEe
Q 026341 8 AGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW 44 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~~l~g~~~~~~g~~l~v~~ 44 (240)
..-.||-|+++++|.++++ .|..| ..|.|.-
T Consensus 97 ~~~v~il~k~p~d~~~lve--~Gv~i----~~vNvG~ 127 (187)
T 3lfj_A 97 EEKVFLLFKNIDTCKRVMD--GGLPI----TTLNIGG 127 (187)
T ss_dssp CEEEEEEESSHHHHHHHHH--TTCCC----SEEEEEE
T ss_pred CceEEEEECCHHHHHHHHH--cCCCC----CEEEECC
Confidence 3457999999999988887 34444 2455543
No 425
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=24.07 E-value=37 Score=21.99 Aligned_cols=10 Identities=10% Similarity=0.570 Sum_probs=8.4
Q ss_pred cceEEEEeCC
Q 026341 8 AGFAFVYFED 17 (240)
Q Consensus 8 kG~aFV~F~~ 17 (240)
||||||+-.+
T Consensus 28 KGfGFI~~dd 37 (89)
T 1wfq_A 28 TSYGFIQCSE 37 (89)
T ss_dssp SSEEEEEETT
T ss_pred CCeeEEecCC
Confidence 8999998654
No 426
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=23.93 E-value=54 Score=21.68 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=18.7
Q ss_pred CCHHHHHHhhccCCCeEEEEEeCC
Q 026341 78 TRERDIKRHFEPYGNVLHVRIRRN 101 (240)
Q Consensus 78 ~~~~~l~~~f~~~G~i~~~~~~kg 101 (240)
.+++.|.+.|+.+|.|..-.+.-|
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MFGg 27 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMFGG 27 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEETTE
T ss_pred hHHHHHHHHHhccCCceEeeccCc
Confidence 456778999999999988777433
No 427
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=23.59 E-value=34 Score=22.13 Aligned_cols=10 Identities=20% Similarity=0.501 Sum_probs=8.4
Q ss_pred cceEEEEeCC
Q 026341 8 AGFAFVYFED 17 (240)
Q Consensus 8 kG~aFV~F~~ 17 (240)
||||||+-.+
T Consensus 28 kGfGFI~~dd 37 (88)
T 2yty_A 28 DNFGFIETAN 37 (88)
T ss_dssp SSEEEEECSS
T ss_pred CCccEEecCC
Confidence 8999998654
No 428
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=23.33 E-value=34 Score=20.65 Aligned_cols=19 Identities=16% Similarity=0.469 Sum_probs=14.6
Q ss_pred CCeEEEEEeCCeEEEEecC
Q 026341 91 GNVLHVRIRRNFAFVQFET 109 (240)
Q Consensus 91 G~i~~~~~~kg~afV~f~~ 109 (240)
|.|+.....+||+||+-.+
T Consensus 3 G~Vk~fn~~kGfGFI~~~~ 21 (66)
T 1g6p_A 3 GKVKWFDSKKGYGFITKDE 21 (66)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred EEEEEEECCCCEEEEecCC
Confidence 5666666679999998764
No 429
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=22.87 E-value=39 Score=24.23 Aligned_cols=21 Identities=10% Similarity=0.017 Sum_probs=16.7
Q ss_pred cCCCeEEEEEeCCeEEEEecC
Q 026341 89 PYGNVLHVRIRRNFAFVQFET 109 (240)
Q Consensus 89 ~~G~i~~~~~~kg~afV~f~~ 109 (240)
..|.|+.....|||+||+-++
T Consensus 63 ~~GtVKwFn~~KGfGFI~~dd 83 (147)
T 3aqq_A 63 YKGVCKCFCRSKGHGFITPAD 83 (147)
T ss_dssp EEEEEEEEETTTTEEEEEESS
T ss_pred cceEEEEEeCCCCeEEeccCC
Confidence 357777777789999998765
No 430
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.76 E-value=1.6e+02 Score=18.88 Aligned_cols=45 Identities=27% Similarity=0.400 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHhhcc-CC-CeEEEEE---eCC--eEEEEecCHHHHHHHHHh
Q 026341 75 PIRTRERDIKRHFEP-YG-NVLHVRI---RRN--FAFVQFETQEEATKALES 119 (240)
Q Consensus 75 ~~~~~~~~l~~~f~~-~G-~i~~~~~---~kg--~afV~f~~~~~a~~A~~~ 119 (240)
....+..+|++.+++ |+ .|..|.. +.+ -|+|.+....+|.+....
T Consensus 31 d~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 31 DRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp CTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHh
Confidence 347889999988876 55 5555544 344 499999877777665443
No 431
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=22.58 E-value=23 Score=23.12 Aligned_cols=19 Identities=21% Similarity=0.466 Sum_probs=13.8
Q ss_pred ccCCCeEEEEEeCCeEEEE
Q 026341 88 EPYGNVLHVRIRRNFAFVQ 106 (240)
Q Consensus 88 ~~~G~i~~~~~~kg~afV~ 106 (240)
..-|.|+.....|||+||+
T Consensus 8 r~tG~VKWFn~~KGfGFI~ 26 (90)
T 3ulj_A 8 RGSGHCKWFNVRMGFGFIS 26 (90)
T ss_dssp EEEEEEEEEETTTTEEEEE
T ss_pred ccceEEEEeeCCCCeEEeE
Confidence 3446677666679999996
No 432
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=28.02 E-value=18 Score=23.77 Aligned_cols=40 Identities=13% Similarity=0.292 Sum_probs=26.6
Q ss_pred eCCeEEEEecCHHHHHHHHHhcCCC-------cccCcEEEEEEeecC
Q 026341 99 RRNFAFVQFETQEEATKALESTDRS-------KLVDRVISVEYALKD 138 (240)
Q Consensus 99 ~kg~afV~f~~~~~a~~A~~~l~g~-------~~~g~~l~v~~a~~~ 138 (240)
..|.|+|.|.+.++..-|++.|-+. +|.|+.+.|--..+.
T Consensus 76 kegqamirfqnsdeqrlaiqkllnhnnnklqieirgqicdvistipe 122 (137)
T 2lsl_A 76 KEGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICDVISTIPE 122 (137)
Confidence 3689999999999888888876322 345555554433333
No 433
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=22.17 E-value=45 Score=20.06 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=14.8
Q ss_pred CCCeEEEEEeCCeEEEEecC
Q 026341 90 YGNVLHVRIRRNFAFVQFET 109 (240)
Q Consensus 90 ~G~i~~~~~~kg~afV~f~~ 109 (240)
.|.|+.....+||+||+-.+
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~ 22 (66)
T 1c9o_A 3 RGKVKWFNNEKGYGFIEVEG 22 (66)
T ss_dssp EEEEEEEETTTTEEEEEETT
T ss_pred ceEEEEEECCCCeEEEecCC
Confidence 36677776679999998654
No 434
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=21.85 E-value=46 Score=20.14 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=14.9
Q ss_pred CCCeEEEEEeCCeEEEEecC
Q 026341 90 YGNVLHVRIRRNFAFVQFET 109 (240)
Q Consensus 90 ~G~i~~~~~~kg~afV~f~~ 109 (240)
.|.|+.....+||+||+-.+
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~ 22 (67)
T 3cam_A 3 TGIVKWFNDAKGFGFITPDE 22 (67)
T ss_dssp EEEEEEEETTTTEEEEEETT
T ss_pred CEEEEEEECCCCeEEEecCC
Confidence 36677777779999998654
No 435
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=21.80 E-value=38 Score=22.32 Aligned_cols=11 Identities=27% Similarity=0.425 Sum_probs=8.9
Q ss_pred ccceEEEEeCC
Q 026341 7 YAGFAFVYFED 17 (240)
Q Consensus 7 ~kG~aFV~F~~ 17 (240)
.||||||+-.+
T Consensus 27 ~KGfGFI~~dd 37 (97)
T 2ytx_A 27 KEAFGFIERGD 37 (97)
T ss_dssp CSSEEEEECSS
T ss_pred eCCceEEecCC
Confidence 58999998654
No 436
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=21.67 E-value=37 Score=21.34 Aligned_cols=20 Identities=20% Similarity=0.511 Sum_probs=15.0
Q ss_pred CCCeEEEEEeCCeEEEEecC
Q 026341 90 YGNVLHVRIRRNFAFVQFET 109 (240)
Q Consensus 90 ~G~i~~~~~~kg~afV~f~~ 109 (240)
.|.|+...-.+||+||+-.+
T Consensus 10 ~G~Vkwfn~~kGfGFI~~~~ 29 (79)
T 1h95_A 10 LGTVKWFNVRNGYGFINRND 29 (79)
T ss_dssp EEEEEEEETTTTEEEEEEGG
T ss_pred ceEEEEEECCCCcEEEecCC
Confidence 46677776679999998654
No 437
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=21.33 E-value=75 Score=21.46 Aligned_cols=26 Identities=23% Similarity=0.585 Sum_probs=20.7
Q ss_pred ccceEEEEeCChh-----HHHHHHHhhCCCc
Q 026341 7 YAGFAFVYFEDDR-----DAADAIRGLDNIP 32 (240)
Q Consensus 7 ~kG~aFV~F~~~~-----~A~~A~~~l~g~~ 32 (240)
..||-||++...+ ++-..+....|..
T Consensus 61 fPGYVFV~~~~~~~~~~~~~~~~vr~t~gV~ 91 (119)
T 1nz8_A 61 FPGYLFIQMDLGDEEEPNEAWEVVRGTPGIT 91 (119)
T ss_dssp STTEEEEEECCCSSSSCCHHHHHHHHSTTCC
T ss_pred CCCEEEEEeeccccccchhHHHHHHcCCCce
Confidence 4899999998877 7777887777753
No 438
>3p3v_A PTS system, N-acetylgalactosamine-specific IIB CO; PTS IIB component, phosphotransferase, sugar transport, STRU genomics; HET: PGE; 1.65A {Streptococcus pyogenes serotype M1} SCOP: c.38.1.0
Probab=21.05 E-value=2.1e+02 Score=20.72 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=15.3
Q ss_pred cceEEEEeCChhHHHHHHH
Q 026341 8 AGFAFVYFEDDRDAADAIR 26 (240)
Q Consensus 8 kG~aFV~F~~~~~A~~A~~ 26 (240)
..-.||-|+++++|.++++
T Consensus 78 ~~~v~il~k~p~d~~~lv~ 96 (163)
T 3p3v_A 78 AQSIFIVVKDLQDAKLLVE 96 (163)
T ss_dssp TCEEEEEESSHHHHHHHHH
T ss_pred CceEEEEECCHHHHHHHHH
Confidence 4567888888888888876
No 439
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Probab=20.99 E-value=40 Score=24.94 Aligned_cols=24 Identities=17% Similarity=0.052 Sum_probs=20.0
Q ss_pred eEEEEeCChhHHHHHHHhhCCCcc
Q 026341 10 FAFVYFEDDRDAADAIRGLDNIPF 33 (240)
Q Consensus 10 ~aFV~F~~~~~A~~A~~~l~g~~~ 33 (240)
..+|-|.+.++|++.++...|.++
T Consensus 112 ~~l~pFa~k~dAe~Fa~~~GG~Vl 135 (175)
T 2hpu_A 112 PEAVPFSSRDEAAAFVLAEGGQVL 135 (175)
T ss_dssp CCEEEESCHHHHHHHHHHTEEEEE
T ss_pred CcccCcCCHHHHHHHHHHcCCEEE
Confidence 789999999999999887666544
No 440
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=20.70 E-value=30 Score=21.46 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=19.5
Q ss_pred EEEEeCChhHHHHHHHhhCCCcc
Q 026341 11 AFVYFEDDRDAADAIRGLDNIPF 33 (240)
Q Consensus 11 aFV~F~~~~~A~~A~~~l~g~~~ 33 (240)
-|++.+|.++|..|+..|+...-
T Consensus 37 if~~~~d~~eA~e~~~~lqa~~~ 59 (71)
T 1gh9_A 37 IFGRADDFEEASELVRKLQEEKY 59 (71)
T ss_dssp CBSCCSSHHHHHHHHHHHSSCCC
T ss_pred EEEecCCHHHHHHHHHHHHhhhc
Confidence 36678999999999999988765
Done!