Query 026342
Match_columns 240
No_of_seqs 286 out of 1133
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 06:47:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026342.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026342hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02921 naphthoate synthase 100.0 3.3E-53 7.1E-58 377.8 23.6 234 5-238 1-234 (327)
2 PRK07396 dihydroxynaphthoic ac 100.0 1.8E-42 4E-47 302.5 19.0 171 66-238 10-180 (273)
3 TIGR03210 badI 2-ketocyclohexa 100.0 2E-42 4.4E-47 299.6 18.2 167 68-238 1-167 (256)
4 TIGR01929 menB naphthoate synt 100.0 2.4E-42 5.1E-47 299.6 18.4 169 69-238 2-170 (259)
5 PRK09120 p-hydroxycinnamoyl Co 100.0 3.1E-42 6.8E-47 301.3 18.7 170 66-238 5-177 (275)
6 PRK09076 enoyl-CoA hydratase; 100.0 3.6E-42 7.9E-47 298.3 18.4 167 68-238 2-168 (258)
7 COG1024 CaiD Enoyl-CoA hydrata 100.0 3.1E-42 6.7E-47 298.5 17.5 168 67-238 3-171 (257)
8 PRK05809 3-hydroxybutyryl-CoA 100.0 4.9E-42 1.1E-46 297.7 18.7 169 67-238 2-170 (260)
9 KOG1680 Enoyl-CoA hydratase [L 100.0 6.7E-43 1.5E-47 296.4 12.8 158 78-239 44-201 (290)
10 PRK05980 enoyl-CoA hydratase; 100.0 4.4E-42 9.4E-47 298.0 17.7 166 70-238 4-173 (260)
11 PRK07657 enoyl-CoA hydratase; 100.0 6.5E-42 1.4E-46 297.0 18.5 167 70-238 4-170 (260)
12 PRK05862 enoyl-CoA hydratase; 100.0 7.7E-42 1.7E-46 296.1 18.8 165 68-238 3-167 (257)
13 PRK06143 enoyl-CoA hydratase; 100.0 5.8E-42 1.3E-46 296.7 18.0 166 70-238 7-172 (256)
14 PRK06142 enoyl-CoA hydratase; 100.0 6.2E-42 1.3E-46 298.9 17.6 169 67-238 4-182 (272)
15 PRK06563 enoyl-CoA hydratase; 100.0 5.8E-42 1.3E-46 296.5 17.2 164 72-238 2-165 (255)
16 PRK05870 enoyl-CoA hydratase; 100.0 6.3E-42 1.4E-46 295.4 17.0 165 70-238 4-168 (249)
17 PRK06190 enoyl-CoA hydratase; 100.0 1.2E-41 2.6E-46 295.0 18.5 165 68-238 3-167 (258)
18 PRK06144 enoyl-CoA hydratase; 100.0 1E-41 2.2E-46 296.2 18.0 169 68-238 7-176 (262)
19 PRK09674 enoyl-CoA hydratase-i 100.0 1.3E-41 2.7E-46 294.5 18.1 164 69-238 2-165 (255)
20 PRK07327 enoyl-CoA hydratase; 100.0 1.4E-41 3E-46 296.2 18.4 170 66-238 8-179 (268)
21 PRK08150 enoyl-CoA hydratase; 100.0 1.3E-41 2.8E-46 294.4 18.1 163 70-238 3-165 (255)
22 PRK07799 enoyl-CoA hydratase; 100.0 1.5E-41 3.2E-46 295.2 17.9 168 67-238 3-173 (263)
23 PLN02664 enoyl-CoA hydratase/d 100.0 1.7E-41 3.8E-46 296.6 17.7 168 68-238 7-184 (275)
24 PRK07658 enoyl-CoA hydratase; 100.0 1.9E-41 4.2E-46 293.5 17.8 165 69-238 2-167 (257)
25 PRK07659 enoyl-CoA hydratase; 100.0 2.3E-41 4.9E-46 293.6 17.8 167 67-238 4-171 (260)
26 PLN02600 enoyl-CoA hydratase 100.0 1.8E-41 3.9E-46 292.8 17.2 160 78-238 2-161 (251)
27 PRK08140 enoyl-CoA hydratase; 100.0 3E-41 6.6E-46 293.1 18.6 167 68-238 3-172 (262)
28 PRK05995 enoyl-CoA hydratase; 100.0 2.9E-41 6.3E-46 293.2 18.5 167 68-238 3-171 (262)
29 PRK06494 enoyl-CoA hydratase; 100.0 2.8E-41 6.1E-46 292.9 18.1 166 67-238 2-167 (259)
30 PRK08260 enoyl-CoA hydratase; 100.0 2.8E-41 6E-46 298.2 18.4 168 68-238 3-186 (296)
31 PRK08138 enoyl-CoA hydratase; 100.0 3.8E-41 8.3E-46 292.3 18.9 165 69-238 7-171 (261)
32 PRK06127 enoyl-CoA hydratase; 100.0 3E-41 6.4E-46 294.2 18.1 166 70-238 12-179 (269)
33 PRK05674 gamma-carboxygeranoyl 100.0 2.2E-41 4.9E-46 294.4 17.2 169 67-238 3-173 (265)
34 PRK06023 enoyl-CoA hydratase; 100.0 3.1E-41 6.8E-46 291.3 17.8 164 70-238 4-170 (251)
35 TIGR02280 PaaB1 phenylacetate 100.0 3.2E-41 7E-46 292.0 17.6 163 72-238 2-166 (256)
36 PRK09245 enoyl-CoA hydratase; 100.0 2.9E-41 6.3E-46 293.8 17.3 166 70-238 4-176 (266)
37 PRK07511 enoyl-CoA hydratase; 100.0 4.4E-41 9.6E-46 291.7 18.1 165 70-238 4-171 (260)
38 PRK08321 naphthoate synthase; 100.0 7.9E-41 1.7E-45 296.0 19.9 182 54-238 11-209 (302)
39 PRK05981 enoyl-CoA hydratase; 100.0 5.2E-41 1.1E-45 292.2 18.3 169 67-238 2-176 (266)
40 PRK07260 enoyl-CoA hydratase; 100.0 3.4E-41 7.3E-46 291.8 17.0 167 69-238 2-171 (255)
41 PRK07509 enoyl-CoA hydratase; 100.0 4.7E-41 1E-45 291.8 17.8 168 68-238 2-175 (262)
42 PRK06210 enoyl-CoA hydratase; 100.0 5.6E-41 1.2E-45 292.9 18.2 170 66-238 2-181 (272)
43 PRK05864 enoyl-CoA hydratase; 100.0 5.8E-41 1.3E-45 293.4 18.0 172 65-238 5-183 (276)
44 PRK05869 enoyl-CoA hydratase; 100.0 5.3E-41 1.2E-45 285.0 16.8 158 78-238 15-172 (222)
45 PRK08139 enoyl-CoA hydratase; 100.0 8.3E-41 1.8E-45 291.0 18.4 165 69-238 11-176 (266)
46 PRK06688 enoyl-CoA hydratase; 100.0 7.6E-41 1.6E-45 290.0 17.5 165 69-238 5-169 (259)
47 PRK11423 methylmalonyl-CoA dec 100.0 8.3E-41 1.8E-45 290.3 17.4 166 68-238 3-169 (261)
48 PLN02888 enoyl-CoA hydratase 100.0 1.2E-40 2.7E-45 289.8 18.4 166 67-238 7-172 (265)
49 PRK07468 enoyl-CoA hydratase; 100.0 1.3E-40 2.8E-45 289.2 18.3 168 68-238 3-172 (262)
50 PRK08252 enoyl-CoA hydratase; 100.0 1.3E-40 2.9E-45 287.9 17.5 161 70-238 4-164 (254)
51 PRK07854 enoyl-CoA hydratase; 100.0 2.1E-40 4.5E-45 285.0 18.3 158 71-238 2-159 (243)
52 PRK03580 carnitinyl-CoA dehydr 100.0 2E-40 4.3E-45 287.9 18.1 164 70-238 4-167 (261)
53 PRK07110 polyketide biosynthes 100.0 2.3E-40 4.9E-45 285.7 18.3 164 68-238 4-167 (249)
54 PRK08258 enoyl-CoA hydratase; 100.0 2.8E-40 6.1E-45 289.2 18.9 166 69-238 17-187 (277)
55 PRK06072 enoyl-CoA hydratase; 100.0 1.9E-40 4.1E-45 286.0 17.5 160 71-238 2-161 (248)
56 PRK08259 enoyl-CoA hydratase; 100.0 2.6E-40 5.7E-45 286.1 17.0 163 70-238 4-166 (254)
57 TIGR03189 dienoyl_CoA_hyt cycl 100.0 4.9E-40 1.1E-44 283.9 18.2 159 71-238 3-161 (251)
58 PLN02157 3-hydroxyisobutyryl-C 100.0 4E-40 8.7E-45 299.9 17.6 165 69-238 37-205 (401)
59 PRK07827 enoyl-CoA hydratase; 100.0 4.9E-40 1.1E-44 285.2 16.7 166 68-238 5-173 (260)
60 PLN02851 3-hydroxyisobutyryl-C 100.0 9.2E-40 2E-44 297.5 18.9 165 69-238 42-210 (407)
61 PRK06495 enoyl-CoA hydratase; 100.0 1.2E-39 2.7E-44 282.3 17.9 164 68-238 3-167 (257)
62 PRK08788 enoyl-CoA hydratase; 100.0 1.8E-39 3.9E-44 284.8 18.7 173 65-238 11-194 (287)
63 PRK08290 enoyl-CoA hydratase; 100.0 2.2E-39 4.7E-44 285.0 18.7 167 67-238 2-189 (288)
64 PLN02874 3-hydroxyisobutyryl-C 100.0 1.1E-39 2.5E-44 296.4 17.3 169 66-238 8-177 (379)
65 PF00378 ECH: Enoyl-CoA hydrat 100.0 4.7E-40 1E-44 282.7 13.7 162 73-238 2-163 (245)
66 PRK05617 3-hydroxyisobutyryl-C 100.0 5.4E-40 1.2E-44 295.0 14.7 165 70-238 4-172 (342)
67 PRK07112 polyketide biosynthes 100.0 1.9E-39 4E-44 280.9 17.3 165 68-238 3-168 (255)
68 PLN03214 probable enoyl-CoA hy 100.0 3.2E-39 7E-44 282.6 18.2 168 68-238 10-181 (278)
69 PRK07938 enoyl-CoA hydratase; 100.0 2.6E-39 5.7E-44 279.1 16.4 156 78-238 9-164 (249)
70 TIGR03200 dearomat_oah 6-oxocy 100.0 4.5E-39 9.7E-44 286.4 17.1 158 81-238 38-197 (360)
71 PLN02988 3-hydroxyisobutyryl-C 100.0 5.4E-39 1.2E-43 291.3 16.8 164 70-238 10-177 (381)
72 PRK08272 enoyl-CoA hydratase; 100.0 9.5E-39 2.1E-43 282.8 17.7 167 66-238 7-197 (302)
73 PRK12478 enoyl-CoA hydratase; 100.0 1.3E-38 2.9E-43 281.2 18.2 164 68-238 4-182 (298)
74 COG0447 MenB Dihydroxynaphthoi 100.0 2.3E-39 5E-44 265.7 9.6 173 65-238 14-189 (282)
75 PLN02267 enoyl-CoA hydratase/i 100.0 8.9E-38 1.9E-42 268.0 17.5 164 71-238 2-169 (239)
76 PRK06213 enoyl-CoA hydratase; 100.0 2E-37 4.3E-42 264.3 17.1 161 70-238 4-165 (229)
77 PRK11730 fadB multifunctional 100.0 1.6E-37 3.4E-42 302.1 18.4 166 70-238 7-175 (715)
78 KOG1679 Enoyl-CoA hydratase [L 100.0 4.6E-38 1E-42 257.8 10.2 169 69-238 27-197 (291)
79 TIGR02437 FadB fatty oxidation 100.0 6.2E-37 1.3E-41 297.6 18.1 166 70-238 7-175 (714)
80 PRK11154 fadJ multifunctional 100.0 1.8E-36 3.9E-41 294.6 19.1 167 70-238 6-176 (708)
81 cd06558 crotonase-like Crotona 100.0 3.1E-36 6.7E-41 249.8 17.4 163 72-238 2-166 (195)
82 TIGR02441 fa_ox_alpha_mit fatt 100.0 1.6E-36 3.5E-41 295.4 18.1 168 67-238 11-183 (737)
83 TIGR03222 benzo_boxC benzoyl-C 100.0 5.1E-36 1.1E-40 281.8 18.8 174 63-238 250-450 (546)
84 TIGR02440 FadJ fatty oxidation 100.0 6.6E-36 1.4E-40 290.2 18.5 159 78-238 8-171 (699)
85 PRK08184 benzoyl-CoA-dihydrodi 100.0 6.4E-36 1.4E-40 281.8 17.6 173 65-238 256-454 (550)
86 TIGR03222 benzo_boxC benzoyl-C 100.0 1.7E-35 3.7E-40 278.3 18.4 173 64-238 6-197 (546)
87 KOG1681 Enoyl-CoA isomerase [L 100.0 3E-36 6.5E-41 249.0 9.0 173 66-239 16-201 (292)
88 PRK08184 benzoyl-CoA-dihydrodi 100.0 1.6E-34 3.4E-39 272.4 19.0 171 66-238 12-201 (550)
89 KOG0016 Enoyl-CoA hydratase/is 100.0 4.7E-33 1E-37 234.3 14.2 172 65-239 3-181 (266)
90 KOG1684 Enoyl-CoA hydratase [L 100.0 4.5E-32 9.7E-37 237.1 11.6 166 69-238 38-207 (401)
91 KOG1682 Enoyl-CoA isomerase [L 100.0 4.6E-29 1E-33 203.4 11.1 159 78-238 39-197 (287)
92 cd07014 S49_SppA Signal peptid 99.7 1.5E-16 3.1E-21 130.6 9.9 123 98-238 22-154 (177)
93 cd07020 Clp_protease_NfeD_1 No 99.6 3E-15 6.5E-20 124.0 12.3 130 82-238 2-150 (187)
94 cd07019 S49_SppA_1 Signal pept 99.5 7.5E-14 1.6E-18 117.7 10.7 89 94-200 17-105 (211)
95 cd07022 S49_Sppa_36K_type Sign 99.4 4.7E-12 1E-16 107.0 10.9 96 87-201 13-109 (214)
96 cd07023 S49_Sppa_N_C Signal pe 99.4 4.4E-12 9.5E-17 106.6 9.7 87 97-201 16-102 (208)
97 cd00394 Clp_protease_like Case 99.2 4.7E-11 1E-15 96.1 9.0 93 95-208 8-100 (161)
98 cd07016 S14_ClpP_1 Caseinolyti 99.1 3.1E-10 6.8E-15 91.5 9.9 117 98-238 15-148 (160)
99 TIGR00706 SppA_dom signal pept 99.1 3.1E-10 6.7E-15 95.4 9.5 84 99-203 14-99 (207)
100 TIGR00705 SppA_67K signal pept 99.1 5.1E-10 1.1E-14 107.4 10.2 143 78-238 307-496 (584)
101 cd07018 S49_SppA_67K_type Sign 99.0 1.8E-09 3.9E-14 91.7 7.4 89 95-202 26-114 (222)
102 cd07021 Clp_protease_NfeD_like 98.9 1.9E-08 4.1E-13 82.7 10.4 96 82-204 2-97 (178)
103 cd07015 Clp_protease_NfeD Nodu 97.8 0.00017 3.6E-09 59.0 9.9 91 94-206 9-102 (172)
104 KOG1683 Hydroxyacyl-CoA dehydr 97.8 3.5E-06 7.6E-11 75.4 -0.3 125 79-206 65-193 (380)
105 PRK10949 protease 4; Provision 97.6 0.001 2.2E-08 64.6 13.4 102 78-200 325-431 (618)
106 PF01972 SDH_sah: Serine dehyd 97.6 0.00096 2.1E-08 57.9 11.2 96 92-211 69-164 (285)
107 PRK07189 malonate decarboxylas 97.6 0.0017 3.8E-08 57.4 12.5 111 80-203 69-185 (301)
108 cd07013 S14_ClpP Caseinolytic 97.5 0.00051 1.1E-08 55.6 8.5 89 95-204 9-99 (162)
109 TIGR03133 malonate_beta malona 97.5 0.0021 4.6E-08 56.2 12.0 110 81-203 61-176 (274)
110 CHL00198 accA acetyl-CoA carbo 97.1 0.012 2.6E-07 52.6 12.8 96 92-200 132-227 (322)
111 PF00574 CLP_protease: Clp pro 97.1 0.003 6.4E-08 51.8 8.5 91 95-208 25-119 (182)
112 PRK12319 acetyl-CoA carboxylas 97.1 0.016 3.5E-07 50.3 12.9 96 92-200 76-171 (256)
113 COG0616 SppA Periplasmic serin 97.0 0.0037 8E-08 56.0 8.7 89 99-206 81-169 (317)
114 PRK00277 clpP ATP-dependent Cl 97.0 0.0035 7.6E-08 52.4 7.6 88 94-204 39-130 (200)
115 cd07017 S14_ClpP_2 Caseinolyti 96.9 0.0041 8.8E-08 50.6 7.3 92 95-207 18-111 (171)
116 PRK11778 putative inner membra 96.8 0.011 2.4E-07 53.1 10.2 104 78-203 89-192 (330)
117 PRK12553 ATP-dependent Clp pro 96.8 0.0066 1.4E-07 51.1 7.7 89 95-204 44-134 (207)
118 TIGR00705 SppA_67K signal pept 96.7 0.0085 1.8E-07 58.0 8.8 85 98-200 76-160 (584)
119 TIGR00513 accA acetyl-CoA carb 96.7 0.055 1.2E-06 48.3 13.2 96 92-200 129-224 (316)
120 PF01039 Carboxyl_trans: Carbo 96.7 0.015 3.3E-07 55.1 10.3 108 82-203 60-170 (493)
121 PLN03229 acetyl-coenzyme A car 96.6 0.048 1E-06 53.5 13.4 96 92-200 220-315 (762)
122 PLN03230 acetyl-coenzyme A car 96.6 0.047 1E-06 50.3 12.6 95 93-200 200-294 (431)
123 CHL00174 accD acetyl-CoA carbo 96.5 0.064 1.4E-06 47.4 12.5 110 81-203 135-246 (296)
124 PRK05724 acetyl-CoA carboxylas 96.5 0.087 1.9E-06 47.1 13.2 95 92-200 129-224 (319)
125 TIGR00515 accD acetyl-CoA carb 96.5 0.073 1.6E-06 47.0 12.5 110 81-203 122-232 (285)
126 PRK05654 acetyl-CoA carboxylas 96.3 0.095 2.1E-06 46.4 12.3 114 78-204 119-234 (292)
127 PRK14512 ATP-dependent Clp pro 96.2 0.031 6.7E-07 46.7 8.7 89 95-204 32-122 (197)
128 PRK10949 protease 4; Provision 95.8 0.039 8.5E-07 53.7 8.4 85 98-200 95-179 (618)
129 PLN02820 3-methylcrotonyl-CoA 95.7 0.23 4.9E-06 48.0 13.0 111 82-202 132-243 (569)
130 TIGR01117 mmdA methylmalonyl-C 95.5 0.22 4.8E-06 47.5 12.1 108 81-202 84-192 (512)
131 CHL00028 clpP ATP-dependent Cl 95.5 0.18 3.8E-06 42.3 10.0 89 95-206 39-131 (200)
132 TIGR01117 mmdA methylmalonyl-C 95.5 0.27 5.8E-06 47.0 12.4 106 82-200 317-427 (512)
133 TIGR00493 clpP ATP-dependent C 95.2 0.14 3E-06 42.5 8.7 91 95-206 35-127 (191)
134 COG1030 NfeD Membrane-bound se 95.1 0.2 4.2E-06 46.5 9.8 101 78-205 25-128 (436)
135 PF01343 Peptidase_S49: Peptid 94.9 0.035 7.6E-07 44.3 4.0 44 162-205 3-46 (154)
136 COG4799 Acetyl-CoA carboxylase 94.8 0.13 2.8E-06 48.9 7.9 103 84-200 96-199 (526)
137 PRK12551 ATP-dependent Clp pro 94.3 0.33 7.2E-06 40.5 8.6 89 95-206 34-126 (196)
138 PRK14514 ATP-dependent Clp pro 93.8 0.53 1.1E-05 40.0 8.9 88 95-206 63-155 (221)
139 PRK14513 ATP-dependent Clp pro 93.7 0.56 1.2E-05 39.3 8.9 89 94-206 35-128 (201)
140 COG0777 AccD Acetyl-CoA carbox 93.5 0.98 2.1E-05 39.5 10.1 112 81-205 124-236 (294)
141 TIGR03134 malonate_gamma malon 93.1 2.5 5.4E-05 36.4 12.1 108 79-200 31-143 (238)
142 PF01039 Carboxyl_trans: Carbo 89.6 2.5 5.4E-05 40.2 9.4 110 78-200 292-406 (493)
143 COG0074 SucD Succinyl-CoA synt 87.0 2 4.3E-05 37.8 6.2 52 104-177 189-240 (293)
144 PLN02820 3-methylcrotonyl-CoA 86.5 6.6 0.00014 38.1 10.1 95 93-200 380-478 (569)
145 COG0740 ClpP Protease subunit 84.3 9.5 0.00021 31.9 8.8 49 156-204 76-126 (200)
146 PF02601 Exonuc_VII_L: Exonucl 81.1 4.5 9.8E-05 35.9 6.2 76 98-195 55-135 (319)
147 PRK12552 ATP-dependent Clp pro 80.6 21 0.00045 30.4 9.7 98 94-206 48-150 (222)
148 COG0825 AccA Acetyl-CoA carbox 79.6 0.86 1.9E-05 40.2 1.0 55 158-218 181-235 (317)
149 TIGR00237 xseA exodeoxyribonuc 78.5 5.5 0.00012 37.3 6.1 83 97-201 169-255 (432)
150 PF13607 Succ_CoA_lig: Succiny 73.8 10 0.00022 29.7 5.6 52 102-176 41-92 (138)
151 COG1570 XseA Exonuclease VII, 71.7 10 0.00022 35.5 5.8 83 98-201 176-261 (440)
152 PTZ00187 succinyl-CoA syntheta 71.6 11 0.00024 33.8 5.9 53 103-177 212-264 (317)
153 PRK00286 xseA exodeoxyribonucl 68.0 13 0.00028 34.7 5.8 75 98-195 176-252 (438)
154 PLN02522 ATP citrate (pro-S)-l 65.5 17 0.00036 35.6 6.2 52 103-177 210-262 (608)
155 COG0793 Prc Periplasmic protea 63.1 10 0.00023 35.2 4.2 98 81-185 205-307 (406)
156 COG3660 Predicted nucleoside-d 59.4 56 0.0012 28.9 7.6 115 82-198 130-256 (329)
157 PF00549 Ligase_CoA: CoA-ligas 56.4 33 0.00071 27.4 5.4 63 93-178 54-121 (153)
158 PLN00125 Succinyl-CoA ligase [ 51.9 34 0.00075 30.4 5.4 54 102-177 192-245 (300)
159 COG4799 Acetyl-CoA carboxylase 49.9 97 0.0021 29.9 8.3 103 84-199 328-435 (526)
160 TIGR02717 AcCoA-syn-alpha acet 48.5 22 0.00047 33.4 3.8 53 102-177 190-242 (447)
161 PLN00049 carboxyl-terminal pro 44.1 17 0.00036 33.5 2.3 100 79-185 194-299 (389)
162 TIGR01019 sucCoAalpha succinyl 39.9 69 0.0015 28.3 5.4 24 102-125 185-208 (286)
163 TIGR00377 ant_ant_sig anti-ant 39.9 91 0.002 22.2 5.3 48 71-125 5-52 (108)
164 PRK06091 membrane protein FdrA 39.8 66 0.0014 31.2 5.6 52 103-177 240-291 (555)
165 TIGR02886 spore_II_AA anti-sig 39.7 1.1E+02 0.0024 21.9 5.7 43 78-125 6-48 (106)
166 PLN02312 acyl-CoA oxidase 37.3 33 0.00072 34.1 3.3 22 1-22 1-24 (680)
167 PRK05678 succinyl-CoA syntheta 37.3 77 0.0017 28.0 5.3 23 103-125 188-210 (291)
168 PF03464 eRF1_2: eRF1 domain 2 35.8 71 0.0015 24.4 4.4 44 82-125 26-83 (133)
169 PF01740 STAS: STAS domain; I 34.7 1.2E+02 0.0026 22.0 5.3 43 78-125 7-57 (117)
170 cd03225 ABC_cobalt_CbiO_domain 31.4 1.3E+02 0.0027 24.5 5.5 37 83-122 155-191 (211)
171 PF01713 Smr: Smr domain; Int 30.9 80 0.0017 21.8 3.6 29 97-125 9-37 (83)
172 smart00463 SMR Small MutS-rela 30.4 1E+02 0.0022 21.1 4.1 30 97-126 12-42 (80)
173 cd03255 ABC_MJ0796_Lo1CDE_FtsE 30.2 1.3E+02 0.0029 24.5 5.4 39 83-123 161-199 (218)
174 KOG0540 3-Methylcrotonyl-CoA c 29.1 2.9E+02 0.0063 26.3 7.7 105 84-201 353-461 (536)
175 COG3356 Predicted membrane pro 29.1 5.6E+02 0.012 25.1 11.8 52 70-132 436-487 (578)
176 cd03216 ABC_Carb_Monos_I This 28.8 1.7E+02 0.0037 22.9 5.6 38 83-123 103-140 (163)
177 KOG1255 Succinyl-CoA synthetas 28.7 1E+02 0.0022 26.8 4.4 23 103-125 219-241 (329)
178 cd03300 ABC_PotA_N PotA is an 28.6 1.4E+02 0.0031 24.8 5.4 39 83-123 151-189 (232)
179 TIGR02211 LolD_lipo_ex lipopro 28.1 1.5E+02 0.0033 24.2 5.4 39 83-123 162-200 (221)
180 cd03297 ABC_ModC_molybdenum_tr 27.7 1.5E+02 0.0033 24.2 5.3 38 83-122 152-189 (214)
181 PRK10584 putative ABC transpor 27.5 1.6E+02 0.0034 24.3 5.5 39 83-123 167-205 (228)
182 TIGR01277 thiQ thiamine ABC tr 27.3 1.6E+02 0.0035 24.0 5.5 38 83-122 149-186 (213)
183 cd03214 ABC_Iron-Siderophores_ 27.2 1.7E+02 0.0036 23.3 5.4 38 83-122 118-155 (180)
184 cd03267 ABC_NatA_like Similar 27.0 1.8E+02 0.0038 24.3 5.7 38 83-123 174-211 (236)
185 cd03298 ABC_ThiQ_thiamine_tran 26.7 1.6E+02 0.0035 23.9 5.3 38 83-122 149-186 (211)
186 cd03259 ABC_Carb_Solutes_like 26.3 1.7E+02 0.0036 23.9 5.3 29 83-113 151-179 (213)
187 cd03261 ABC_Org_Solvent_Resist 26.1 1.6E+02 0.0035 24.4 5.3 39 83-123 157-195 (235)
188 cd04241 AAK_FomA-like AAK_FomA 26.1 1.3E+02 0.0028 25.6 4.7 35 88-125 13-47 (252)
189 cd03293 ABC_NrtD_SsuB_transpor 25.8 1.8E+02 0.0039 23.9 5.5 39 83-123 152-190 (220)
190 cd03265 ABC_DrrA DrrA is the A 25.8 1.8E+02 0.0039 23.9 5.5 39 83-123 152-190 (220)
191 PRK10247 putative ABC transpor 25.6 1.7E+02 0.0038 24.1 5.4 40 83-124 158-197 (225)
192 cd06567 Peptidase_S41 C-termin 25.6 45 0.00098 27.6 1.8 94 81-186 61-165 (224)
193 COG0488 Uup ATPase components 25.4 93 0.002 30.0 4.0 43 84-134 461-503 (530)
194 TIGR01184 ntrCD nitrate transp 25.4 1.8E+02 0.0039 24.1 5.5 29 83-113 135-163 (230)
195 PRK10908 cell division protein 25.1 1.9E+02 0.0042 23.7 5.6 38 83-123 158-195 (222)
196 cd03235 ABC_Metallic_Cations A 25.1 1.9E+02 0.0041 23.5 5.5 37 83-122 153-189 (213)
197 COG2201 CheB Chemotaxis respon 25.1 3.3E+02 0.0071 24.9 7.3 52 70-125 235-286 (350)
198 PRK11831 putative ABC transpor 24.9 1.8E+02 0.0038 24.9 5.4 40 82-123 163-202 (269)
199 PRK13646 cbiO cobalt transport 24.8 1.8E+02 0.0038 25.3 5.4 40 83-124 166-205 (286)
200 TIGR03410 urea_trans_UrtE urea 24.8 2E+02 0.0043 23.7 5.6 39 83-123 152-190 (230)
201 cd03257 ABC_NikE_OppD_transpor 24.6 1.9E+02 0.004 23.8 5.4 29 83-113 166-194 (228)
202 cd03229 ABC_Class3 This class 24.4 2.1E+02 0.0045 22.6 5.5 39 82-122 120-158 (178)
203 cd03256 ABC_PhnC_transporter A 24.4 1.8E+02 0.0039 24.1 5.3 39 83-123 165-203 (241)
204 cd03301 ABC_MalK_N The N-termi 24.4 1.9E+02 0.0041 23.5 5.3 38 83-122 151-188 (213)
205 TIGR00960 3a0501s02 Type II (G 24.2 2.1E+02 0.0045 23.3 5.6 38 83-123 159-196 (216)
206 PRK11629 lolD lipoprotein tran 24.1 2E+02 0.0044 23.8 5.5 38 83-122 166-203 (233)
207 TIGR01166 cbiO cobalt transpor 23.9 2.2E+02 0.0047 22.7 5.5 38 83-123 148-185 (190)
208 PF13304 AAA_21: AAA domain; P 23.9 2E+02 0.0044 22.8 5.4 40 82-124 259-298 (303)
209 cd03246 ABCC_Protease_Secretio 23.8 2.2E+02 0.0048 22.4 5.5 37 83-123 117-153 (173)
210 PF06833 MdcE: Malonate decarb 23.8 1.3E+02 0.0028 25.9 4.2 91 92-197 40-138 (234)
211 PRK09984 phosphonate/organopho 23.5 1.8E+02 0.004 24.6 5.3 39 83-123 173-211 (262)
212 TIGR02315 ABC_phnC phosphonate 23.5 1.9E+02 0.0041 24.0 5.3 39 83-123 166-204 (243)
213 PF02350 Epimerase_2: UDP-N-ac 23.5 1.3E+02 0.0028 27.1 4.5 44 78-123 179-222 (346)
214 PRK11247 ssuB aliphatic sulfon 23.4 2E+02 0.0043 24.6 5.4 38 83-122 154-191 (257)
215 PRK15112 antimicrobial peptide 23.4 1.9E+02 0.0041 24.7 5.3 39 83-123 170-208 (267)
216 cd03230 ABC_DR_subfamily_A Thi 23.2 2.2E+02 0.0048 22.4 5.4 38 83-123 116-153 (173)
217 PF04439 Adenyl_transf: Strept 23.2 81 0.0018 27.8 3.0 22 104-125 9-30 (282)
218 PRK11248 tauB taurine transpor 23.1 2E+02 0.0043 24.4 5.4 39 83-123 149-187 (255)
219 PRK11701 phnK phosphonate C-P 22.9 2.1E+02 0.0045 24.2 5.5 39 83-123 172-210 (258)
220 PRK13634 cbiO cobalt transport 22.8 2E+02 0.0044 24.9 5.5 40 83-124 166-205 (290)
221 PRK11300 livG leucine/isoleuci 22.8 2.2E+02 0.0047 23.9 5.6 39 83-123 174-212 (255)
222 TIGR03608 L_ocin_972_ABC putat 22.6 2.4E+02 0.0051 22.7 5.5 38 82-122 154-191 (206)
223 PRK13505 formate--tetrahydrofo 22.6 1.2E+02 0.0026 29.5 4.1 34 153-186 360-393 (557)
224 cd03295 ABC_OpuCA_Osmoprotecti 22.6 2E+02 0.0043 24.0 5.2 39 83-123 156-194 (242)
225 PRK13633 cobalt transporter AT 22.6 2E+02 0.0043 24.8 5.3 40 83-124 165-204 (280)
226 cd03213 ABCG_EPDR ABCG transpo 22.5 2.5E+02 0.0053 22.7 5.6 38 83-124 132-169 (194)
227 cd03258 ABC_MetN_methionine_tr 22.5 2.1E+02 0.0046 23.6 5.3 39 83-123 161-199 (233)
228 TIGR03005 ectoine_ehuA ectoine 22.5 2.1E+02 0.0046 24.0 5.4 39 83-123 167-205 (252)
229 PRK15093 antimicrobial peptide 22.4 2E+02 0.0044 25.5 5.5 40 83-124 179-218 (330)
230 smart00870 Asparaginase Aspara 22.3 3.2E+02 0.007 24.3 6.7 33 93-125 55-88 (323)
231 PF04536 TPM: TLP18.3, Psb32 a 22.2 1.2E+02 0.0027 22.0 3.5 30 95-124 2-31 (119)
232 cd03292 ABC_FtsE_transporter F 22.2 2.4E+02 0.0051 22.9 5.5 38 83-123 157-194 (214)
233 cd03296 ABC_CysA_sulfate_impor 21.9 2.2E+02 0.0047 23.7 5.3 39 83-123 157-195 (239)
234 cd03226 ABC_cobalt_CbiO_domain 21.8 2.6E+02 0.0056 22.6 5.6 37 83-123 147-183 (205)
235 PF06935 DUF1284: Protein of u 21.7 1.7E+02 0.0037 21.5 4.1 31 95-125 2-32 (103)
236 PRK10253 iron-enterobactin tra 21.7 2.2E+02 0.0048 24.2 5.4 40 82-123 163-202 (265)
237 TIGR03864 PQQ_ABC_ATP ABC tran 21.6 2.3E+02 0.0051 23.5 5.4 40 83-124 153-192 (236)
238 cd00267 ABC_ATPase ABC (ATP-bi 21.5 2.8E+02 0.0061 21.2 5.6 37 83-123 101-137 (157)
239 cd03215 ABC_Carb_Monos_II This 21.5 2.7E+02 0.0058 22.1 5.6 37 83-123 125-161 (182)
240 TIGR02323 CP_lyasePhnK phospho 21.4 2.3E+02 0.0049 23.8 5.4 39 83-123 169-207 (253)
241 PRK11186 carboxy-terminal prot 21.4 96 0.0021 30.9 3.3 102 78-186 352-458 (667)
242 COG4598 HisP ABC-type histidin 21.3 2.4E+02 0.0052 23.8 5.1 38 84-124 174-211 (256)
243 TIGR01189 ccmA heme ABC export 21.3 3.2E+02 0.007 21.9 6.1 39 82-123 147-185 (198)
244 COG1126 GlnQ ABC-type polar am 21.3 2.4E+02 0.0052 24.2 5.3 39 84-125 158-196 (240)
245 cd03232 ABC_PDR_domain2 The pl 21.2 2.7E+02 0.0059 22.3 5.6 40 82-124 128-167 (192)
246 PRK10771 thiQ thiamine transpo 21.1 2.4E+02 0.0052 23.4 5.4 39 83-123 150-188 (232)
247 cd03222 ABC_RNaseL_inhibitor T 21.1 2.9E+02 0.0063 22.2 5.7 39 83-123 92-130 (177)
248 PRK13547 hmuV hemin importer A 21.0 2.2E+02 0.0048 24.5 5.3 40 82-123 174-213 (272)
249 TIGR03821 AblA_like_1 lysine-2 21.0 1E+02 0.0022 27.6 3.2 25 101-126 128-152 (321)
250 PRK10419 nikE nickel transport 21.0 2.3E+02 0.0049 24.2 5.3 39 83-123 172-210 (268)
251 cd03269 ABC_putative_ATPase Th 20.9 2.5E+02 0.0053 22.8 5.4 37 83-123 149-185 (210)
252 PRK13642 cbiO cobalt transport 20.9 2.4E+02 0.0051 24.3 5.4 40 83-124 161-200 (277)
253 cd03231 ABC_CcmA_heme_exporter 20.7 2.8E+02 0.0061 22.4 5.6 38 83-123 146-183 (201)
254 PRK13635 cbiO cobalt transport 20.6 2.5E+02 0.0055 24.2 5.6 40 83-124 161-200 (279)
255 PRK13645 cbiO cobalt transport 20.6 2.3E+02 0.005 24.5 5.4 39 83-123 171-209 (289)
256 PRK14250 phosphate ABC transpo 20.5 2.5E+02 0.0054 23.4 5.4 39 83-123 152-190 (241)
257 cd03233 ABC_PDR_domain1 The pl 20.4 2.8E+02 0.0061 22.5 5.6 38 83-122 139-176 (202)
258 cd03237 ABC_RNaseL_inhibitor_d 20.3 2.5E+02 0.0054 23.8 5.4 39 83-123 136-174 (246)
259 TIGR02982 heterocyst_DevA ABC 20.3 2.5E+02 0.0055 22.9 5.3 38 83-122 162-199 (220)
260 TIGR00968 3a0106s01 sulfate AB 20.3 2.5E+02 0.0055 23.3 5.4 40 82-123 150-189 (237)
261 PRK13637 cbiO cobalt transport 20.2 2.5E+02 0.0054 24.3 5.5 40 83-124 165-204 (287)
262 cd03299 ABC_ModC_like Archeal 20.2 2.6E+02 0.0057 23.2 5.5 40 82-123 149-188 (235)
263 KOG1389 3-oxoacyl CoA thiolase 20.2 2.8E+02 0.0061 25.2 5.6 23 9-31 2-24 (435)
264 PF01990 ATP-synt_F: ATP synth 20.1 1.2E+02 0.0026 21.6 2.9 52 100-176 27-79 (95)
No 1
>PLN02921 naphthoate synthase
Probab=100.00 E-value=3.3e-53 Score=377.84 Aligned_cols=234 Identities=72% Similarity=1.104 Sum_probs=204.7
Q ss_pred hHHHhHhHHHhhhccccCccCCCCCCccccCCCcCCCccccccCCcccCcccceeeccCCCCcceeEEEEEEeCCCEEEE
Q 026342 5 IDSARRRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKI 84 (240)
Q Consensus 5 ~~~~~~r~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~~I 84 (240)
|+++.||++++++|+.|++..++..++...+..+.+++|++.|+.|+.+|..|..++.+++.+|++|.++++.+++|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~Va~I 80 (327)
T PLN02921 1 MDAARRRLARVANHLVPSANPASMAAARSSSATAPPDSYRRVHGDVSSEPVVWRKVPDGSGKEFTDIIYEKAVGEGIAKI 80 (327)
T ss_pred CchhhhHHHHHhcccCcccccccccccccccccCCCCchhhhccccCCCCccccccccCCccCCceEEEEEecCCCEEEE
Confidence 68899999999999998777666666545556688999999999999999999999888888999999987435899999
Q ss_pred EEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcC
Q 026342 85 TINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRL 164 (240)
Q Consensus 85 tlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 164 (240)
+||||+++|+||.+|+.+|.++|+.++.|+++++|||+|.|+++||+|+|++++.................+++.+|.++
T Consensus 81 tLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 160 (327)
T PLN02921 81 TINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRL 160 (327)
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999679999999987643211111111111234567789999
Q ss_pred CCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHHhcCCcccc
Q 026342 165 PKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVKC 238 (240)
Q Consensus 165 ~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ellltG~~i~A 238 (240)
||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|++++|.++|++|+++|+.|+|
T Consensus 161 ~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A 234 (327)
T PLN02921 161 PKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTA 234 (327)
T ss_pred CCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCH
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999987
No 2
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=1.8e-42 Score=302.47 Aligned_cols=171 Identities=66% Similarity=1.081 Sum_probs=149.2
Q ss_pred CcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccc
Q 026342 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (240)
Q Consensus 66 ~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~ 145 (240)
++++.|.+++ +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++.......
T Consensus 10 ~~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~ 87 (273)
T PRK07396 10 KEYEDILYKS--ADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVD 87 (273)
T ss_pred CCCcceEEEe--cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccc
Confidence 4677788887 79999999999999999999999999999999999999999999999856999999998754221111
Q ss_pred hhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHH
Q 026342 146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ 225 (240)
Q Consensus 146 ~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~ 225 (240)
..........+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..+
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~ 167 (273)
T PRK07396 88 DDGVPRLNVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKK 167 (273)
T ss_pred hhhhhhhHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHH
Confidence 11111112345677899999999999999999999999999999999999999999999999999888999999999999
Q ss_pred HHHHHhcCCcccc
Q 026342 226 QCLWWGLKKHVKC 238 (240)
Q Consensus 226 a~ellltG~~i~A 238 (240)
|++|+++|+.|+|
T Consensus 168 a~~l~ltg~~~~A 180 (273)
T PRK07396 168 AREIWFLCRQYDA 180 (273)
T ss_pred HHHHHHhCCCcCH
Confidence 9999999999986
No 3
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=2e-42 Score=299.60 Aligned_cols=167 Identities=49% Similarity=0.853 Sum_probs=146.9
Q ss_pred ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchh
Q 026342 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (240)
Q Consensus 68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (240)
|++|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++... .....
T Consensus 1 ~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~-~~~~~ 77 (256)
T TIGR03210 1 YEDILYEK--RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGG-YDGRG 77 (256)
T ss_pred CCceEEEe--eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcc-ccchh
Confidence 34577877 7999999999999999999999999999999999999999999999986799999999976321 11111
Q ss_pred hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHH
Q 026342 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQC 227 (240)
Q Consensus 148 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ 227 (240)
.. ...+.+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..+|+
T Consensus 78 ~~-~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~ 156 (256)
T TIGR03210 78 TI-GLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAR 156 (256)
T ss_pred HH-HHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHH
Confidence 11 11235677889999999999999999999999999999999999999999999999998887899999999999999
Q ss_pred HHHhcCCcccc
Q 026342 228 LWWGLKKHVKC 238 (240)
Q Consensus 228 ellltG~~i~A 238 (240)
+|+++|+.|+|
T Consensus 157 ~lll~g~~~~a 167 (256)
T TIGR03210 157 EIWYLCRRYTA 167 (256)
T ss_pred HHHHhCCCcCH
Confidence 99999999986
No 4
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=2.4e-42 Score=299.63 Aligned_cols=169 Identities=65% Similarity=1.038 Sum_probs=145.7
Q ss_pred eeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhh
Q 026342 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (240)
Q Consensus 69 ~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (240)
++|.+++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++..........
T Consensus 2 ~~i~~~~~-~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 80 (259)
T TIGR01929 2 TDIRYEKS-TDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSG 80 (259)
T ss_pred ceEEEEEc-CCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhh
Confidence 45667652 58999999999999999999999999999999999999999999999867999999998653211111111
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHH
Q 026342 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCL 228 (240)
Q Consensus 149 ~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~e 228 (240)
.....+.+++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|++++|+.+|++
T Consensus 81 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~ 160 (259)
T TIGR01929 81 VHRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKARE 160 (259)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHH
Confidence 11112345677899999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHhcCCcccc
Q 026342 229 WWGLKKHVKC 238 (240)
Q Consensus 229 llltG~~i~A 238 (240)
|+++|++++|
T Consensus 161 l~l~g~~~~a 170 (259)
T TIGR01929 161 IWFLCRQYDA 170 (259)
T ss_pred HHHhCCccCH
Confidence 9999999986
No 5
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=3.1e-42 Score=301.26 Aligned_cols=170 Identities=31% Similarity=0.447 Sum_probs=149.0
Q ss_pred CcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccc
Q 026342 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (240)
Q Consensus 66 ~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~ 145 (240)
.+|+.|.+++ +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.......
T Consensus 5 ~~~~~i~~~~--~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~~ 81 (275)
T PRK09120 5 NRWDTVKVEV--EDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAG-DAWSAGMDLKEYFRETDAQ 81 (275)
T ss_pred cccccEEEEE--ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCC-CceecCcCHHHHhhccccc
Confidence 3577889987 789999999999999999999999999999999999999999999999 7999999998753211111
Q ss_pred -h--hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcC
Q 026342 146 -Y--ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVS 222 (240)
Q Consensus 146 -~--~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG 222 (240)
. .........+++.+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG 161 (275)
T PRK09120 82 PEILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVG 161 (275)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcC
Confidence 1 0111112345678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcccc
Q 026342 223 TVQQCLWWGLKKHVKC 238 (240)
Q Consensus 223 ~~~a~ellltG~~i~A 238 (240)
..+|++|+++|+.|+|
T Consensus 162 ~~~a~~llltg~~~~A 177 (275)
T PRK09120 162 HRDALYYIMTGETFTG 177 (275)
T ss_pred HHHHHHHHhcCCccCH
Confidence 9999999999999986
No 6
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.6e-42 Score=298.29 Aligned_cols=167 Identities=22% Similarity=0.321 Sum_probs=146.6
Q ss_pred ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchh
Q 026342 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (240)
Q Consensus 68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (240)
+..|.+++ +++|++||||||++ |+||.+|+.+|.++++.+++|+++|+|||+|.|+++||+|+|++++.........
T Consensus 2 ~~~v~~~~--~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~ 78 (258)
T PRK09076 2 MIELDLEI--DGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAR 78 (258)
T ss_pred ceEEEEEE--ECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHH
Confidence 34577877 78999999999985 9999999999999999999999999999999986799999999876432211111
Q ss_pred hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHH
Q 026342 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQC 227 (240)
Q Consensus 148 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ 227 (240)
.... .+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..+|+
T Consensus 79 ~~~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~ 157 (258)
T PRK09076 79 EMAR-RFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAK 157 (258)
T ss_pred HHHH-HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHH
Confidence 1111 245677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcccc
Q 026342 228 LWWGLKKHVKC 238 (240)
Q Consensus 228 ellltG~~i~A 238 (240)
+|+++|+.++|
T Consensus 158 ~l~l~g~~~~a 168 (258)
T PRK09076 158 RMILCGERVDA 168 (258)
T ss_pred HHHHcCCcCCH
Confidence 99999999986
No 7
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=3.1e-42 Score=298.51 Aligned_cols=168 Identities=35% Similarity=0.539 Sum_probs=148.2
Q ss_pred cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCcccccc-CCccc
Q 026342 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTR-DGYAD 145 (240)
Q Consensus 67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~-~~~~~ 145 (240)
.+..+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++.+.. .....
T Consensus 3 ~~~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g-~~FsaG~Dl~~~~~~~~~~~ 79 (257)
T COG1024 3 TYETILVER--EDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAG-KAFSAGADLKELLSPEDGNA 79 (257)
T ss_pred CCCeeEEEe--eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CceecccCHHHHhcccchhH
Confidence 345677776 577999999999999999999999999999999999999999999999 89999999998764 11111
Q ss_pred hhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHH
Q 026342 146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ 225 (240)
Q Consensus 146 ~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~ 225 (240)
.... ....+.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+
T Consensus 80 ~~~~-~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~ 158 (257)
T COG1024 80 AENL-MQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGR 158 (257)
T ss_pred HHHH-HhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHH
Confidence 1111 113456788999999999999999999999999999999999999999999999999998789999999999999
Q ss_pred HHHHHhcCCcccc
Q 026342 226 QCLWWGLKKHVKC 238 (240)
Q Consensus 226 a~ellltG~~i~A 238 (240)
|++|++||+.|+|
T Consensus 159 a~~l~ltg~~~~a 171 (257)
T COG1024 159 AKELLLTGEPISA 171 (257)
T ss_pred HHHHHHcCCcCCH
Confidence 9999999999987
No 8
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=4.9e-42 Score=297.72 Aligned_cols=169 Identities=33% Similarity=0.473 Sum_probs=149.1
Q ss_pred cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch
Q 026342 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (240)
Q Consensus 67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~ 146 (240)
+|+.+.+++ +++|++|+||||++.|+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++........
T Consensus 2 ~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~ 79 (260)
T PRK05809 2 ELKNVILEK--EGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEG 79 (260)
T ss_pred CcceEEEEE--eCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHH
Confidence 356688887 789999999999999999999999999999999999999999999998679999999987643221111
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ 226 (240)
Q Consensus 147 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a 226 (240)
..+.. ...+++.+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+.+++++|++++|..+|
T Consensus 80 ~~~~~-~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 158 (260)
T PRK05809 80 RKFGL-LGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKA 158 (260)
T ss_pred HHHHH-HHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 11111 23467788999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred HHHHhcCCcccc
Q 026342 227 CLWWGLKKHVKC 238 (240)
Q Consensus 227 ~ellltG~~i~A 238 (240)
++|+++|+.++|
T Consensus 159 ~~l~l~g~~~~a 170 (260)
T PRK05809 159 KELIYTGDMINA 170 (260)
T ss_pred HHHHHhCCCCCH
Confidence 999999999986
No 9
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=6.7e-43 Score=296.42 Aligned_cols=158 Identities=36% Similarity=0.558 Sum_probs=141.9
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHH
Q 026342 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (240)
Q Consensus 78 ~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l 157 (240)
+++|+.|+||||+++|+|+..++.||.++|..+++|++++++||||.| +.||+|+||+++......+..... +...
T Consensus 44 d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~g-ksFcsG~Dl~e~~~~~~~~~~~~~---~~~~ 119 (290)
T KOG1680|consen 44 DNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSG-KSFCSGADLKEMKKDEFQDVSDGI---FLRV 119 (290)
T ss_pred CCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCC-CccccccCHHHHhhcccccccccc---ccch
Confidence 799999999999999999999999999999999999999999999999 899999999987654443322211 1122
Q ss_pred HHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHHhcCCccc
Q 026342 158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVK 237 (240)
Q Consensus 158 ~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ellltG~~i~ 237 (240)
+..+.+.+||+||+|||+|+|||++|+++||+|||+++|+|++++.++|++|.+||+.+|+|.||..+|+||++||++++
T Consensus 120 ~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~~~ 199 (290)
T KOG1680|consen 120 WDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGRRLG 199 (290)
T ss_pred hhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHhcCccc
Confidence 34455899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 026342 238 CG 239 (240)
Q Consensus 238 A~ 239 (240)
|.
T Consensus 200 Aq 201 (290)
T KOG1680|consen 200 AQ 201 (290)
T ss_pred HH
Confidence 73
No 10
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.4e-42 Score=298.05 Aligned_cols=166 Identities=28% Similarity=0.417 Sum_probs=146.0
Q ss_pred eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCc-cc---
Q 026342 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-AD--- 145 (240)
Q Consensus 70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~-~~--- 145 (240)
.|.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++..... ..
T Consensus 4 ~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (260)
T PRK05980 4 TVLIEI--RDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVA 81 (260)
T ss_pred eEEEEE--ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhh
Confidence 477776 799999999999999999999999999999999999999999999998679999999987543211 01
Q ss_pred hhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHH
Q 026342 146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ 225 (240)
Q Consensus 146 ~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~ 225 (240)
...+.. .+..++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+
T Consensus 82 ~~~~~~-~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 160 (260)
T PRK05980 82 LRDFVR-RGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKR 160 (260)
T ss_pred HHHHHH-HHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHH
Confidence 111111 2345677899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcccc
Q 026342 226 QCLWWGLKKHVKC 238 (240)
Q Consensus 226 a~ellltG~~i~A 238 (240)
|++|+++|+.|+|
T Consensus 161 a~~l~l~g~~~~a 173 (260)
T PRK05980 161 ALELLLTGDAFSA 173 (260)
T ss_pred HHHHHHcCCccCH
Confidence 9999999999986
No 11
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.5e-42 Score=297.00 Aligned_cols=167 Identities=28% Similarity=0.445 Sum_probs=147.0
Q ss_pred eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhh
Q 026342 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (240)
Q Consensus 70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~ 149 (240)
.|.+++. +++|++|+||||++.|++|.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++...........
T Consensus 4 ~v~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~ 82 (260)
T PRK07657 4 NISVDYV-TPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHA 82 (260)
T ss_pred eEEEEEc-cCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHH
Confidence 5777752 689999999999999999999999999999999999999999999999569999999987643221111111
Q ss_pred hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHH
Q 026342 150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLW 229 (240)
Q Consensus 150 ~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~el 229 (240)
.. .+.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..+|++|
T Consensus 83 ~~-~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l 161 (260)
T PRK07657 83 VS-LIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKEL 161 (260)
T ss_pred HH-HHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHHH
Confidence 11 24567788999999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred HhcCCcccc
Q 026342 230 WGLKKHVKC 238 (240)
Q Consensus 230 lltG~~i~A 238 (240)
+++|++++|
T Consensus 162 ~l~g~~~~a 170 (260)
T PRK07657 162 IYTGRRISA 170 (260)
T ss_pred HHhCCCCCH
Confidence 999999986
No 12
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.7e-42 Score=296.07 Aligned_cols=165 Identities=32% Similarity=0.488 Sum_probs=146.6
Q ss_pred ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchh
Q 026342 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (240)
Q Consensus 68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (240)
++.+.+++ +++|++|+||||++.|++|.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++..... .+
T Consensus 3 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~--~~ 77 (257)
T PRK05862 3 YETILVET--RGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSE-KAFAAGADIKEMADLSF--MD 77 (257)
T ss_pred CceEEEEe--eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CceECCcChHhHhccch--hH
Confidence 34578877 689999999999999999999999999999999999999999999999 79999999987643221 11
Q ss_pred hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHH
Q 026342 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQC 227 (240)
Q Consensus 148 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ 227 (240)
.... .+..++.+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+|+
T Consensus 78 ~~~~-~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 156 (257)
T PRK05862 78 VYKG-DYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAM 156 (257)
T ss_pred HHHH-HHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHH
Confidence 1111 234467789999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred HHHhcCCcccc
Q 026342 228 LWWGLKKHVKC 238 (240)
Q Consensus 228 ellltG~~i~A 238 (240)
+|+++|+.++|
T Consensus 157 ~l~l~g~~~~a 167 (257)
T PRK05862 157 DLCLTGRMMDA 167 (257)
T ss_pred HHHHhCCccCH
Confidence 99999999986
No 13
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.8e-42 Score=296.71 Aligned_cols=166 Identities=28% Similarity=0.410 Sum_probs=144.8
Q ss_pred eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhh
Q 026342 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (240)
Q Consensus 70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~ 149 (240)
++.+++. +++|++|+||||++.|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++..........+
T Consensus 7 ~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 85 (256)
T PRK06143 7 HAGVTRD-DRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAF 85 (256)
T ss_pred cceeeec-CCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHH
Confidence 3566653 689999999999999999999999999999999999999999999998679999999987643221111111
Q ss_pred hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHH
Q 026342 150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLW 229 (240)
Q Consensus 150 ~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~el 229 (240)
.. .+.+++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ |+++++++|++++|..+|++|
T Consensus 86 ~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~a~~l 163 (256)
T PRK06143 86 IS-RLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWARTRWL 163 (256)
T ss_pred HH-HHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHHHHHH
Confidence 11 3456778899999999999999999999999999999999999999999999997 777788999999999999999
Q ss_pred HhcCCcccc
Q 026342 230 WGLKKHVKC 238 (240)
Q Consensus 230 lltG~~i~A 238 (240)
+++|+.|+|
T Consensus 164 ~l~g~~~~a 172 (256)
T PRK06143 164 LLTGETIDA 172 (256)
T ss_pred HHcCCcCCH
Confidence 999999986
No 14
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.2e-42 Score=298.94 Aligned_cols=169 Identities=23% Similarity=0.313 Sum_probs=147.8
Q ss_pred cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCc---
Q 026342 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY--- 143 (240)
Q Consensus 67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~--- 143 (240)
.++.|.+++ +++|++|+||||+++|++|.+|+.+|.++|++++.|+++|+|||+|.| ++||+|+|++++.....
T Consensus 4 ~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~~ 80 (272)
T PRK06142 4 TYESFTVEL--ADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSG-KHFSYGIDLPAMAGVFGQLG 80 (272)
T ss_pred CcceEEEEe--cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CceecccCHHHHhhhccccc
Confidence 345688887 799999999999999999999999999999999999999999999999 79999999987643100
Q ss_pred -----cchhhhh--hhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHH
Q 026342 144 -----ADYENFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI 216 (240)
Q Consensus 144 -----~~~~~~~--~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~ 216 (240)
....... ...+.+++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~ 160 (272)
T PRK06142 81 KDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQR 160 (272)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHH
Confidence 0011111 112356778899999999999999999999999999999999999999999999999999989999
Q ss_pred HHhhcCHHHHHHHHhcCCcccc
Q 026342 217 MSRLVSTVQQCLWWGLKKHVKC 238 (240)
Q Consensus 217 l~rlvG~~~a~ellltG~~i~A 238 (240)
|++++|..+|++|+++|+.|+|
T Consensus 161 l~~~~G~~~a~~l~l~g~~~~a 182 (272)
T PRK06142 161 LPRIIGDGHLRELALTGRDIDA 182 (272)
T ss_pred HHHHhCHHHHHHHHHhCCCcCH
Confidence 9999999999999999999986
No 15
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.8e-42 Score=296.51 Aligned_cols=164 Identities=24% Similarity=0.284 Sum_probs=141.3
Q ss_pred EEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhh
Q 026342 72 IYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGR 151 (240)
Q Consensus 72 ~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~ 151 (240)
.+++ +++|++|+||||++.|+||.+|+.+|.++++++++|+++|+|||+|.| ++||+|+|++++.............
T Consensus 2 ~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~ 78 (255)
T PRK06563 2 SRER--RGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHG-EHFTAGLDLADVAPKLAAGGFPFPE 78 (255)
T ss_pred eEEE--ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CCCcCCcCHHHHhhccccchhhhhh
Confidence 4565 689999999999999999999999999999999999999999999999 7999999998764321111111111
Q ss_pred hhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHHh
Q 026342 152 LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWG 231 (240)
Q Consensus 152 ~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~elll 231 (240)
.....+...+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|++++|..+|++|++
T Consensus 79 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l 158 (255)
T PRK06563 79 GGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLL 158 (255)
T ss_pred hhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHH
Confidence 11122233588999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred cCCcccc
Q 026342 232 LKKHVKC 238 (240)
Q Consensus 232 tG~~i~A 238 (240)
+|+.|+|
T Consensus 159 tg~~~~a 165 (255)
T PRK06563 159 TGDEFDA 165 (255)
T ss_pred cCCCcCH
Confidence 9999986
No 16
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.3e-42 Score=295.36 Aligned_cols=165 Identities=29% Similarity=0.401 Sum_probs=145.9
Q ss_pred eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhh
Q 026342 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (240)
Q Consensus 70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~ 149 (240)
.|.+++ +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++...........
T Consensus 4 ~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 80 (249)
T PRK05870 4 PVLLDV--DDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAG-KAFCAGADLTALGAAPGRPAEDG 80 (249)
T ss_pred cEEEEc--cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCeecCcChHHHhcccccchHHH
Confidence 467776 799999999999999999999999999999999999999999999999 79999999997653221111111
Q ss_pred hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHH
Q 026342 150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLW 229 (240)
Q Consensus 150 ~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~el 229 (240)
.. .+.+++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|+++|++|
T Consensus 81 ~~-~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l 159 (249)
T PRK05870 81 LR-RIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAA 159 (249)
T ss_pred HH-HHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHHH
Confidence 11 23456678999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HhcCCcccc
Q 026342 230 WGLKKHVKC 238 (240)
Q Consensus 230 lltG~~i~A 238 (240)
+++|+.++|
T Consensus 160 ~ltg~~~~a 168 (249)
T PRK05870 160 LLFGMRFDA 168 (249)
T ss_pred HHhCCccCH
Confidence 999999986
No 17
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-41 Score=295.02 Aligned_cols=165 Identities=28% Similarity=0.366 Sum_probs=147.3
Q ss_pred ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchh
Q 026342 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (240)
Q Consensus 68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (240)
++.|.++. +++|++|+||||++.|+||.+|+++|.+++++++.|+++|+|||+|.| ++||+|+|++++....... .
T Consensus 3 ~~~v~~~~--~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~-~ 78 (258)
T PRK06190 3 EPILLVET--HDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGAD-PAFCAGLDLKELGGDGSAY-G 78 (258)
T ss_pred CceEEEEe--eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCccCCcCHHHHhcccchh-h
Confidence 34577777 799999999999999999999999999999999999999999999998 8999999999764321111 1
Q ss_pred hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHH
Q 026342 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQC 227 (240)
Q Consensus 148 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ 227 (240)
. ...+.+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|++++|+.+|+
T Consensus 79 ~--~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 156 (258)
T PRK06190 79 A--QDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRAR 156 (258)
T ss_pred H--HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHH
Confidence 1 11245677889999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred HHHhcCCcccc
Q 026342 228 LWWGLKKHVKC 238 (240)
Q Consensus 228 ellltG~~i~A 238 (240)
+|+++|++++|
T Consensus 157 ~l~ltg~~~~a 167 (258)
T PRK06190 157 RMSLTGDFLDA 167 (258)
T ss_pred HHHHhCCccCH
Confidence 99999999986
No 18
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-41 Score=296.15 Aligned_cols=169 Identities=26% Similarity=0.329 Sum_probs=147.8
Q ss_pred ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchh
Q 026342 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (240)
Q Consensus 68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (240)
.+.|.++. +++|++|+||||+++|+||.+|+++|.+++++++.|+++|+|||+|.|+++||+|+|++++.........
T Consensus 7 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~ 84 (262)
T PRK06144 7 TDELLLEV--RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDA 84 (262)
T ss_pred CCceEEEe--eCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHH
Confidence 44578887 7999999999999999999999999999999999999999999999986799999999876432111111
Q ss_pred hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEeccccc-ccccCCCchHHHHHhhcCHHHH
Q 026342 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPK-VGSFDAGYGSSIMSRLVSTVQQ 226 (240)
Q Consensus 148 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~-~Gl~p~~g~~~~l~rlvG~~~a 226 (240)
......+.+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||++ +|++|+++++++|++++|.++|
T Consensus 85 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a 164 (262)
T PRK06144 85 VAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARV 164 (262)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHH
Confidence 111112456778899999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred HHHHhcCCcccc
Q 026342 227 CLWWGLKKHVKC 238 (240)
Q Consensus 227 ~ellltG~~i~A 238 (240)
++++++|+.|+|
T Consensus 165 ~~l~l~g~~~~a 176 (262)
T PRK06144 165 KDMLFTARLLEA 176 (262)
T ss_pred HHHHHcCCCcCH
Confidence 999999999986
No 19
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=1.3e-41 Score=294.47 Aligned_cols=164 Identities=26% Similarity=0.447 Sum_probs=145.7
Q ss_pred eeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhh
Q 026342 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (240)
Q Consensus 69 ~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (240)
..|.+++ +++|++||||||++.|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++..... ...
T Consensus 2 ~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~--~~~ 76 (255)
T PRK09674 2 SELLVSR--QQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNA-RFFAAGADLNEMAEKDL--AAT 76 (255)
T ss_pred ceEEEEe--ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CceecccChHhHhccch--hhh
Confidence 3467776 799999999999999999999999999999999999999999999999 89999999987643211 111
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHH
Q 026342 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCL 228 (240)
Q Consensus 149 ~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~e 228 (240)
. .....+++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|++
T Consensus 77 ~-~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~ 155 (255)
T PRK09674 77 L-NDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQ 155 (255)
T ss_pred H-HHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence 1 112345678899999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred HHhcCCcccc
Q 026342 229 WWGLKKHVKC 238 (240)
Q Consensus 229 llltG~~i~A 238 (240)
|+++|+.++|
T Consensus 156 l~l~g~~~~a 165 (255)
T PRK09674 156 MVLTGESITA 165 (255)
T ss_pred HHHcCCccCH
Confidence 9999999986
No 20
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-41 Score=296.21 Aligned_cols=170 Identities=24% Similarity=0.381 Sum_probs=148.7
Q ss_pred CcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccc
Q 026342 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (240)
Q Consensus 66 ~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~ 145 (240)
..|+.|.+++. +++|++|+||||++.|+++.+|+.+|.++|++++.|+++|+|||||.| ++||+|+|++++.......
T Consensus 8 ~~~~~i~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~ 85 (268)
T PRK07327 8 ADYPALRFDRP-PPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEG-KAFSAGGDLALVEEMADDF 85 (268)
T ss_pred CCCCeEEEEec-CCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCC-CCcccccCHHHHhhccCcH
Confidence 35667888762 478999999999999999999999999999999999999999999999 8999999998764321111
Q ss_pred --hhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCH
Q 026342 146 --YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVST 223 (240)
Q Consensus 146 --~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~ 223 (240)
...... ...+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus 86 ~~~~~~~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~ 164 (268)
T PRK07327 86 EVRARVWR-EARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGM 164 (268)
T ss_pred HHHHHHHH-HHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCH
Confidence 111111 23567788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcccc
Q 026342 224 VQQCLWWGLKKHVKC 238 (240)
Q Consensus 224 ~~a~ellltG~~i~A 238 (240)
.+|++|+++|++|+|
T Consensus 165 ~~a~~l~ltg~~~~a 179 (268)
T PRK07327 165 AKAKYYLLLCEPVSG 179 (268)
T ss_pred HHHHHHHHcCCccCH
Confidence 999999999999986
No 21
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-41 Score=294.37 Aligned_cols=163 Identities=26% Similarity=0.374 Sum_probs=143.7
Q ss_pred eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhh
Q 026342 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (240)
Q Consensus 70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~ 149 (240)
.|.+++ +++|++|+||||++.|+||.+|+.+|.++++.++ +++|+|||||.| ++||+|+|++++...........
T Consensus 3 ~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g-~~F~aG~Dl~~~~~~~~~~~~~~ 77 (255)
T PRK08150 3 LVSYEL--DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEG-DHFCAGLDLSELRERDAGEGMHH 77 (255)
T ss_pred eEEEEe--eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCC-CceecCcCHHHHhhccchhHHHH
Confidence 467776 7899999999999999999999999999999997 789999999999 79999999997643221111111
Q ss_pred hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHH
Q 026342 150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLW 229 (240)
Q Consensus 150 ~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~el 229 (240)
.. .+.+++.+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|
T Consensus 78 ~~-~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l 156 (255)
T PRK08150 78 SR-RWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDM 156 (255)
T ss_pred HH-HHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHH
Confidence 11 24567788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcccc
Q 026342 230 WGLKKHVKC 238 (240)
Q Consensus 230 lltG~~i~A 238 (240)
+++|+.|+|
T Consensus 157 ~ltg~~~~a 165 (255)
T PRK08150 157 MLTGRVYDA 165 (255)
T ss_pred HHcCCcCCH
Confidence 999999986
No 22
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-41 Score=295.25 Aligned_cols=168 Identities=27% Similarity=0.421 Sum_probs=144.7
Q ss_pred cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch
Q 026342 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (240)
Q Consensus 67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~ 146 (240)
.++.+.+++ +++|++|+||||+++|++|.+|+++|.+++++++.|+++|+|||+|.| ++||+|+|++++........
T Consensus 3 ~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~ 79 (263)
T PRK07799 3 GGPHALVEQ--RGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAG-GAFCAGMDLKAATKKPPGDS 79 (263)
T ss_pred CCceEEEEE--ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CccccccCHHHHhhccccch
Confidence 345688887 789999999999999999999999999999999999999999999999 89999999997643221111
Q ss_pred -h-h-hhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCH
Q 026342 147 -E-N-FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVST 223 (240)
Q Consensus 147 -~-~-~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~ 223 (240)
. . +....+.. +.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|+|++|.
T Consensus 80 ~~~~~~~~~~~~~-~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~ 158 (263)
T PRK07799 80 FKDGSYDPSRIDA-LLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPY 158 (263)
T ss_pred hhhhhhhhhHHHH-HHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCH
Confidence 0 0 00111222 335789999999999999999999999999999999999999999999999999889999999999
Q ss_pred HHHHHHHhcCCcccc
Q 026342 224 VQQCLWWGLKKHVKC 238 (240)
Q Consensus 224 ~~a~ellltG~~i~A 238 (240)
.+|++|+++|+.|+|
T Consensus 159 ~~a~~l~ltg~~~~a 173 (263)
T PRK07799 159 TVACDLLLTGRHITA 173 (263)
T ss_pred HHHHHHHHcCCCCCH
Confidence 999999999999986
No 23
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=1.7e-41 Score=296.58 Aligned_cols=168 Identities=23% Similarity=0.309 Sum_probs=144.6
Q ss_pred ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCcc---
Q 026342 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA--- 144 (240)
Q Consensus 68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~--- 144 (240)
+..+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++......
T Consensus 7 ~~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g-~~FcaG~Dl~~~~~~~~~~~~ 83 (275)
T PLN02664 7 LEIIQKSP--NSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAG-DHFCSGIDLKTLNSISEQSSS 83 (275)
T ss_pred eEEEEecC--CCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CceeeCcChHHhhhccccccc
Confidence 33344444 799999999999999999999999999999999999999999999999 799999999876431110
Q ss_pred -c----hhhhh--hhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHH
Q 026342 145 -D----YENFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIM 217 (240)
Q Consensus 145 -~----~~~~~--~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l 217 (240)
+ ..... ...+.+++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l 163 (275)
T PLN02664 84 GDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRL 163 (275)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHH
Confidence 0 01110 1123456778999999999999999999999999999999999999999999999999998889999
Q ss_pred HhhcCHHHHHHHHhcCCcccc
Q 026342 218 SRLVSTVQQCLWWGLKKHVKC 238 (240)
Q Consensus 218 ~rlvG~~~a~ellltG~~i~A 238 (240)
++++|.++|++|+++|+.|+|
T Consensus 164 ~~~vG~~~A~~l~ltg~~~~a 184 (275)
T PLN02664 164 PSIVGYGNAMELALTGRRFSG 184 (275)
T ss_pred HHHhCHHHHHHHHHhCCCCCH
Confidence 999999999999999999986
No 24
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-41 Score=293.47 Aligned_cols=165 Identities=24% Similarity=0.345 Sum_probs=145.5
Q ss_pred eeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCcc-chh
Q 026342 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA-DYE 147 (240)
Q Consensus 69 ~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~-~~~ 147 (240)
+.+.+++ +++|++|+||||++ |+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++...... ...
T Consensus 2 ~~i~~~~--~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 77 (257)
T PRK07658 2 KFLSVRV--EDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEG-RFFSAGADIKEFTSVTEAEQAT 77 (257)
T ss_pred ceEEEEe--eCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceEeCcCHHHHhccCchhhHH
Confidence 3577777 79999999999985 999999999999999999999999999999999 799999999876432211 111
Q ss_pred hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHH
Q 026342 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQC 227 (240)
Q Consensus 148 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ 227 (240)
.... ....++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..+|+
T Consensus 78 ~~~~-~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 156 (257)
T PRK07658 78 ELAQ-LGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKAL 156 (257)
T ss_pred HHHH-HHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHH
Confidence 1111 235677889999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred HHHhcCCcccc
Q 026342 228 LWWGLKKHVKC 238 (240)
Q Consensus 228 ellltG~~i~A 238 (240)
+|+++|+.++|
T Consensus 157 ~l~l~g~~~~a 167 (257)
T PRK07658 157 EMMLTSEPITG 167 (257)
T ss_pred HHHHcCCCcCH
Confidence 99999999986
No 25
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-41 Score=293.63 Aligned_cols=167 Identities=22% Similarity=0.357 Sum_probs=147.3
Q ss_pred cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCcc-c
Q 026342 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA-D 145 (240)
Q Consensus 67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~-~ 145 (240)
+++.|.++. +++|++|+||||++.|++|.+|+.+|.++++.+ .|+++|+|||+|.| ++||+|+|++++...... .
T Consensus 4 ~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 79 (260)
T PRK07659 4 KMESVVVKY--EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNG-RGFSAGGDIKMMLSSNDESK 79 (260)
T ss_pred CCceEEEEe--eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCC-CCcccccCHHHHhhccCchh
Confidence 445688887 799999999999999999999999999999999 58899999999999 799999999976432111 1
Q ss_pred hhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHH
Q 026342 146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ 225 (240)
Q Consensus 146 ~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~ 225 (240)
..... ..+.+++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+
T Consensus 80 ~~~~~-~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~ 158 (260)
T PRK07659 80 FDGVM-NTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENK 158 (260)
T ss_pred HHHHH-HHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHH
Confidence 11111 13456778899999999999999999999999999999999999999999999999999989999999999999
Q ss_pred HHHHHhcCCcccc
Q 026342 226 QCLWWGLKKHVKC 238 (240)
Q Consensus 226 a~ellltG~~i~A 238 (240)
|++|+++|+.|+|
T Consensus 159 a~~l~ltg~~~~a 171 (260)
T PRK07659 159 AKQIIWEGKKLSA 171 (260)
T ss_pred HHHHHHhCCccCH
Confidence 9999999999987
No 26
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=1.8e-41 Score=292.83 Aligned_cols=160 Identities=26% Similarity=0.451 Sum_probs=142.0
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHH
Q 026342 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (240)
Q Consensus 78 ~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l 157 (240)
+++|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||+|.|+++||+|+|++++..........+.. .+..+
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~-~~~~~ 80 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVN-SLRST 80 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHH-HHHHH
Confidence 57999999999999999999999999999999999999999999998557999999998764322111111221 24566
Q ss_pred HHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHHhcCCccc
Q 026342 158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVK 237 (240)
Q Consensus 158 ~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ellltG~~i~ 237 (240)
+.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+++|+.++
T Consensus 81 ~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~ 160 (251)
T PLN02600 81 FSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIG 160 (251)
T ss_pred HHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccC
Confidence 77899999999999999999999999999999999999999999999999999989999999999999999999999998
Q ss_pred c
Q 026342 238 C 238 (240)
Q Consensus 238 A 238 (240)
|
T Consensus 161 a 161 (251)
T PLN02600 161 A 161 (251)
T ss_pred H
Confidence 6
No 27
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3e-41 Score=293.06 Aligned_cols=167 Identities=32% Similarity=0.459 Sum_probs=145.5
Q ss_pred ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCc---c
Q 026342 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY---A 144 (240)
Q Consensus 68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~---~ 144 (240)
|+.|.++. +++|++|+||||++.|+||.+|+.+|.+++++++ |+++|+|||+|.| ++||+|+|++++..... .
T Consensus 3 ~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 78 (262)
T PRK08140 3 YETILLAI--EAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAG-RGFCAGQDLADRDVTPGGAMP 78 (262)
T ss_pred CceEEEEe--ECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCC-CCcccCcChHHHhccccccch
Confidence 45678887 7899999999999999999999999999999999 9999999999999 79999999987642211 0
Q ss_pred chhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHH
Q 026342 145 DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV 224 (240)
Q Consensus 145 ~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~ 224 (240)
.........+..++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|++++|..
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~ 158 (262)
T PRK08140 79 DLGESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMA 158 (262)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHH
Confidence 10111111123467789999999999999999999999999999999999999999999999999998999999999999
Q ss_pred HHHHHHhcCCcccc
Q 026342 225 QQCLWWGLKKHVKC 238 (240)
Q Consensus 225 ~a~ellltG~~i~A 238 (240)
+|++|+++|+.|+|
T Consensus 159 ~a~~l~l~g~~~~a 172 (262)
T PRK08140 159 RALGLALLGEKLSA 172 (262)
T ss_pred HHHHHHHcCCCcCH
Confidence 99999999999986
No 28
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.9e-41 Score=293.19 Aligned_cols=167 Identities=32% Similarity=0.495 Sum_probs=144.7
Q ss_pred ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCc-cch
Q 026342 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-ADY 146 (240)
Q Consensus 68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~-~~~ 146 (240)
|+.+.++. +++|++||||||++.|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..... ...
T Consensus 3 ~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~ 79 (262)
T PRK05995 3 YETLEIEQ--RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAG-KAFCAGADLNWMKKMAGYSDD 79 (262)
T ss_pred CceEEEEe--eCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CccccCcCHHHHhhhcccCch
Confidence 55688887 799999999999999999999999999999999999999999999999 89999999987632111 111
Q ss_pred hhh-hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHH
Q 026342 147 ENF-GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ 225 (240)
Q Consensus 147 ~~~-~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~ 225 (240)
... ....+.+++.++.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++++ .+|++++|.++
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~-~~l~~~vg~~~ 158 (262)
T PRK05995 80 ENRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATIS-PYVIRAMGERA 158 (262)
T ss_pred hhhhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchH-HHHHHHhCHHH
Confidence 111 1113456788899999999999999999999999999999999999999999999999997754 56899999999
Q ss_pred HHHHHhcCCcccc
Q 026342 226 QCLWWGLKKHVKC 238 (240)
Q Consensus 226 a~ellltG~~i~A 238 (240)
|++|+++|+.|+|
T Consensus 159 a~~l~l~g~~~~a 171 (262)
T PRK05995 159 ARRYFLTAERFDA 171 (262)
T ss_pred HHHHHHcCCccCH
Confidence 9999999999986
No 29
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.8e-41 Score=292.89 Aligned_cols=166 Identities=30% Similarity=0.377 Sum_probs=144.2
Q ss_pred cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch
Q 026342 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (240)
Q Consensus 67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~ 146 (240)
+++.|.+++ +++|++|+||||++.|++|.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++.......
T Consensus 2 ~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~- 78 (259)
T PRK06494 2 ALPFSTVER--KGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRG- 78 (259)
T ss_pred CCceeEEEe--ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcch-
Confidence 345678887 78999999999999999999999999999999999999999999999867999999998754321111
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ 226 (240)
Q Consensus 147 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a 226 (240)
... . .+..+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|
T Consensus 79 ~~~-~-~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a 155 (259)
T PRK06494 79 WPE-S-GFGGL-TSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRA 155 (259)
T ss_pred hhh-H-HHHHH-HHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHH
Confidence 101 1 12233 34568999999999999999999999999999999999999999999999999899999999999999
Q ss_pred HHHHhcCCcccc
Q 026342 227 CLWWGLKKHVKC 238 (240)
Q Consensus 227 ~ellltG~~i~A 238 (240)
++|+++|+.|+|
T Consensus 156 ~~lll~g~~~~a 167 (259)
T PRK06494 156 MGMILTGRRVTA 167 (259)
T ss_pred HHHHHcCCcCCH
Confidence 999999999986
No 30
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.8e-41 Score=298.16 Aligned_cols=168 Identities=33% Similarity=0.475 Sum_probs=146.5
Q ss_pred ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccC-Cc---
Q 026342 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRD-GY--- 143 (240)
Q Consensus 68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~-~~--- 143 (240)
|+.|.+++ +++|++|+||||++.|+||.+|+.+|.++|+.++.|+++|+|||+|.| ++||+|+|++++... ..
T Consensus 3 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~ 79 (296)
T PRK08260 3 YETIRYDV--ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAG-RAFCAGADLSAGGNTFDLDAP 79 (296)
T ss_pred cceEEEee--eCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CCeecCcChHHhhhccccccc
Confidence 45688887 799999999999999999999999999999999999999999999999 899999999875320 00
Q ss_pred ----------c-c-hhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCC
Q 026342 144 ----------A-D-YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAG 211 (240)
Q Consensus 144 ----------~-~-~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~ 211 (240)
. . ..........+++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~ 159 (296)
T PRK08260 80 RTPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEA 159 (296)
T ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCc
Confidence 0 0 000111113456778999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHhhcCHHHHHHHHhcCCcccc
Q 026342 212 YGSSIMSRLVSTVQQCLWWGLKKHVKC 238 (240)
Q Consensus 212 g~~~~l~rlvG~~~a~ellltG~~i~A 238 (240)
+++++|++++|..+|++|+++|+.|+|
T Consensus 160 g~~~~l~r~vG~~~A~~llltg~~~~a 186 (296)
T PRK08260 160 ASSWFLPRLVGLQTALEWVYSGRVFDA 186 (296)
T ss_pred chhhhHHHhhCHHHHHHHHHcCCccCH
Confidence 999999999999999999999999986
No 31
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.8e-41 Score=292.33 Aligned_cols=165 Identities=31% Similarity=0.473 Sum_probs=146.1
Q ss_pred eeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhh
Q 026342 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (240)
Q Consensus 69 ~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (240)
+.+.++.. +++|++|+||||+++|+||.+|+.+|.++++.+++|+++|+|||+|.| ++||+|+|++++.... ....
T Consensus 7 ~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~--~~~~ 82 (261)
T PRK08138 7 DVVLLERP-ADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGE-KVFAAGADIKEFATAG--AIEM 82 (261)
T ss_pred CCEEEEEc-cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CCeeCCcCHHHHhccc--hhHH
Confidence 44667653 689999999999999999999999999999999999999999999998 7999999998764321 1111
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHH
Q 026342 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCL 228 (240)
Q Consensus 149 ~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~e 228 (240)
... ...+++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++
T Consensus 83 ~~~-~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 161 (261)
T PRK08138 83 YLR-HTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMR 161 (261)
T ss_pred HHH-HHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHH
Confidence 111 2456778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcccc
Q 026342 229 WWGLKKHVKC 238 (240)
Q Consensus 229 llltG~~i~A 238 (240)
|+++|+.++|
T Consensus 162 l~l~g~~~~a 171 (261)
T PRK08138 162 MALTGCMVPA 171 (261)
T ss_pred HHHcCCCCCH
Confidence 9999999986
No 32
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3e-41 Score=294.24 Aligned_cols=166 Identities=28% Similarity=0.459 Sum_probs=146.5
Q ss_pred eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCcc-ch-h
Q 026342 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA-DY-E 147 (240)
Q Consensus 70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~-~~-~ 147 (240)
.|.+++ +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++...... .. .
T Consensus 12 ~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~ 89 (269)
T PRK06127 12 KLLAEK--TGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVA 89 (269)
T ss_pred ceEEEE--ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHH
Confidence 377777 6899999999999999999999999999999999999999999999986799999999876432111 11 1
Q ss_pred hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHH
Q 026342 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQC 227 (240)
Q Consensus 148 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ 227 (240)
.+.. ....++.+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..+|+
T Consensus 90 ~~~~-~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 168 (269)
T PRK06127 90 AYEQ-AVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAK 168 (269)
T ss_pred HHHH-HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHHH
Confidence 1111 234567889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcccc
Q 026342 228 LWWGLKKHVKC 238 (240)
Q Consensus 228 ellltG~~i~A 238 (240)
+|+++|+.|+|
T Consensus 169 ~l~ltg~~~~a 179 (269)
T PRK06127 169 DLFYTARRFDA 179 (269)
T ss_pred HHHHcCCCCCH
Confidence 99999999986
No 33
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.2e-41 Score=294.42 Aligned_cols=169 Identities=26% Similarity=0.405 Sum_probs=144.9
Q ss_pred cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccc-
Q 026342 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD- 145 (240)
Q Consensus 67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~- 145 (240)
+|+++.++++ +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.......
T Consensus 3 ~~~~l~~~~~-~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~ 80 (265)
T PRK05674 3 DFQTIELIRD-PRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRG-RHFSAGADLAWMQQSADLDY 80 (265)
T ss_pred CcceEEEEEc-CCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCcccCcCHHHHhhcccccc
Confidence 3677888873 378999999999999999999999999999999999999999999999 8999999998754211100
Q ss_pred -hhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHH
Q 026342 146 -YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV 224 (240)
Q Consensus 146 -~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~ 224 (240)
........+.+++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|+++ +.++++++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~-~~~l~~~vG~~ 159 (265)
T PRK05674 81 NTNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVI-SPFVVKAIGER 159 (265)
T ss_pred hhhhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchh-HHHHHHHhCHH
Confidence 0000111245677889999999999999999999999999999999999999999999999999764 45699999999
Q ss_pred HHHHHHhcCCcccc
Q 026342 225 QQCLWWGLKKHVKC 238 (240)
Q Consensus 225 ~a~ellltG~~i~A 238 (240)
+|++|+++|+.|+|
T Consensus 160 ~a~~l~ltg~~~~a 173 (265)
T PRK05674 160 AARRYALTAERFDG 173 (265)
T ss_pred HHHHHHHhCcccCH
Confidence 99999999999986
No 34
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.1e-41 Score=291.34 Aligned_cols=164 Identities=23% Similarity=0.420 Sum_probs=144.8
Q ss_pred eEEEEEEeCC---CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch
Q 026342 70 DIIYEKAVGE---GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (240)
Q Consensus 70 ~v~~~~~~~~---~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~ 146 (240)
.|.+++ ++ +|++|+||||+++|+||.+|+++|.++|+.+++|+++|+|||+|.| ++||+|+|++++.......
T Consensus 4 ~i~~~~--~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~- 79 (251)
T PRK06023 4 HILVER--PGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTE-GCFSAGNDMQDFLAAAMGG- 79 (251)
T ss_pred eEEEEe--ecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeecCcCHHHHhhccccc-
Confidence 477776 44 5999999999999999999999999999999999999999999998 7999999998764321111
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ 226 (240)
Q Consensus 147 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a 226 (240)
..+.. .+.+++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++++++++++++|..+|
T Consensus 80 ~~~~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a 158 (251)
T PRK06023 80 TSFGS-EILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRA 158 (251)
T ss_pred hhhHH-HHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHH
Confidence 11111 24567788999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred HHHHhcCCcccc
Q 026342 227 CLWWGLKKHVKC 238 (240)
Q Consensus 227 ~ellltG~~i~A 238 (240)
++|+++|+.++|
T Consensus 159 ~~l~l~g~~~~a 170 (251)
T PRK06023 159 FALLALGEGFSA 170 (251)
T ss_pred HHHHHhCCCCCH
Confidence 999999999986
No 35
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=3.2e-41 Score=292.02 Aligned_cols=163 Identities=29% Similarity=0.437 Sum_probs=142.5
Q ss_pred EEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchh--hh
Q 026342 72 IYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE--NF 149 (240)
Q Consensus 72 ~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~--~~ 149 (240)
.+++ +++|++|+||||++.|+||.+|+.+|.++++++++|+ +|+|||+|.| ++||+|+|++++......... ..
T Consensus 2 ~~e~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~~ 77 (256)
T TIGR02280 2 LSAL--EAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAG-RGFCAGQDLSERNPTPGGAPDLGRT 77 (256)
T ss_pred eEEE--ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCC-CCcccCcCHHHHhhccccchhHHHH
Confidence 4566 6999999999999999999999999999999999999 9999999999 799999999976432111111 11
Q ss_pred hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHH
Q 026342 150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLW 229 (240)
Q Consensus 150 ~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~el 229 (240)
....+..++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|++++|+.+|++|
T Consensus 78 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l 157 (256)
T TIGR02280 78 IETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGL 157 (256)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHH
Confidence 11112356778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcccc
Q 026342 230 WGLKKHVKC 238 (240)
Q Consensus 230 lltG~~i~A 238 (240)
+++|++|+|
T Consensus 158 ~l~g~~~~a 166 (256)
T TIGR02280 158 AMLGEKLDA 166 (256)
T ss_pred HHcCCCCCH
Confidence 999999986
No 36
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.9e-41 Score=293.77 Aligned_cols=166 Identities=28% Similarity=0.408 Sum_probs=145.1
Q ss_pred eEEEEEEeCCCEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCc----c
Q 026342 70 DIIYEKAVGEGIAKITINRPDRRNAFRP-HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY----A 144 (240)
Q Consensus 70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~-~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~----~ 144 (240)
.|.+++ +++|++|+||||++.|++|. +|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++..... .
T Consensus 4 ~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (266)
T PRK09245 4 FLLVER--DGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAG-TAFSSGGNVKDMRARVGAFGGS 80 (266)
T ss_pred ceEEEE--ECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccCcCHHHHhhcccccccc
Confidence 377777 68999999999999999995 9999999999999999999999999999 89999999987643111 0
Q ss_pred chh--hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcC
Q 026342 145 DYE--NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVS 222 (240)
Q Consensus 145 ~~~--~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG 222 (240)
... ......+.+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG 160 (266)
T PRK09245 81 PADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIG 160 (266)
T ss_pred chhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhh
Confidence 000 111112345678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcccc
Q 026342 223 TVQQCLWWGLKKHVKC 238 (240)
Q Consensus 223 ~~~a~ellltG~~i~A 238 (240)
..+|++|+++|++++|
T Consensus 161 ~~~a~~l~l~g~~~~a 176 (266)
T PRK09245 161 MARAAEMAFTGDAIDA 176 (266)
T ss_pred HHHHHHHHHcCCCcCH
Confidence 9999999999999986
No 37
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.4e-41 Score=291.74 Aligned_cols=165 Identities=30% Similarity=0.412 Sum_probs=146.2
Q ss_pred eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCC---ccch
Q 026342 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDG---YADY 146 (240)
Q Consensus 70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~---~~~~ 146 (240)
.+.++. +++|++|+||||++.|+||.+|+.+|.++++++++|+++|+|||+|.| ++||+|+|++++.... ....
T Consensus 4 ~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~ 80 (260)
T PRK07511 4 ELLSRR--EGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAG-GFFCAGGNLNRLLENRAKPPSVQ 80 (260)
T ss_pred eeEEEe--ECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCC-CCcccCcCHHHHhhcccccchhH
Confidence 367776 799999999999999999999999999999999999999999999999 8999999998764311 1111
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ 226 (240)
Q Consensus 147 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a 226 (240)
.... ..+.+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.+++
T Consensus 81 ~~~~-~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a 159 (260)
T PRK07511 81 AASI-DGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLA 159 (260)
T ss_pred HHHH-HHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHH
Confidence 1111 134567888999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred HHHHhcCCcccc
Q 026342 227 CLWWGLKKHVKC 238 (240)
Q Consensus 227 ~ellltG~~i~A 238 (240)
++|+++|+.++|
T Consensus 160 ~~l~ltg~~~~a 171 (260)
T PRK07511 160 TELLLEGKPISA 171 (260)
T ss_pred HHHHHhCCCCCH
Confidence 999999999986
No 38
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=7.9e-41 Score=295.96 Aligned_cols=182 Identities=50% Similarity=0.837 Sum_probs=152.3
Q ss_pred cccceeeccCCCCcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCC------C
Q 026342 54 DVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT------E 127 (240)
Q Consensus 54 ~~~~~~~~~~~~~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~------~ 127 (240)
+..|...+ .-.|++|.++++.+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.|+ +
T Consensus 11 ~~~~~~~~---~~~~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~ 87 (302)
T PRK08321 11 PDLWRPVP---GFDFTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGW 87 (302)
T ss_pred cccccCcC---CCCceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCC
Confidence 56676443 23577899988656899999999999999999999999999999999999999999999983 5
Q ss_pred CcccCCCccccccCC-----cc--c-hh--hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEe-CCc
Q 026342 128 AFCSGGDQALRTRDG-----YA--D-YE--NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA-DNA 196 (240)
Q Consensus 128 ~FcaG~Dl~~~~~~~-----~~--~-~~--~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias-~~a 196 (240)
+||+|+|++++.... .. . .. ........++...+.++||||||+|||+|+|||++|+++||+|||+ +++
T Consensus 88 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a 167 (302)
T PRK08321 88 AFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHA 167 (302)
T ss_pred eeecCcChhhhccccccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCC
Confidence 999999998643210 00 0 00 0111112345667899999999999999999999999999999999 689
Q ss_pred EEecccccccccCCCchHHHHHhhcCHHHHHHHHhcCCcccc
Q 026342 197 IFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVKC 238 (240)
Q Consensus 197 ~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ellltG~~i~A 238 (240)
+|++||+++|++|+++++++|+|++|..+|++|+++|+.++|
T Consensus 168 ~f~~pe~~~Gl~p~~~~~~~L~r~vG~~~A~~l~ltG~~~~A 209 (302)
T PRK08321 168 RFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYSA 209 (302)
T ss_pred EEECCccccccCCCchHHHHHHHHhCHHHHHHHHHcCCccCH
Confidence 999999999999999899999999999999999999999986
No 39
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.2e-41 Score=292.22 Aligned_cols=169 Identities=25% Similarity=0.389 Sum_probs=147.3
Q ss_pred cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCC-CeeEEEEeeCCCCCcccCCCccccccCCcc-
Q 026342 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDS-SVGVIILTGKGTEAFCSGGDQALRTRDGYA- 144 (240)
Q Consensus 67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~-~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~- 144 (240)
+|+.+.+++ +++|++|+||||+++|++|.+|+.+|.++++.++.|+ ++|+|||+|.| ++||+|+|++++......
T Consensus 2 ~~~~v~~~~--~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~ 78 (266)
T PRK05981 2 QFKKVTLDF--DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAG-RGFCTGANLQGRGSGGRES 78 (266)
T ss_pred CcceEEEEe--ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CCcccccCHHhhhcccccc
Confidence 466788887 7999999999999999999999999999999999876 49999999999 799999999976432110
Q ss_pred ----chhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhh
Q 026342 145 ----DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL 220 (240)
Q Consensus 145 ----~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rl 220 (240)
.........+.+++.+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~ 158 (266)
T PRK05981 79 DSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRL 158 (266)
T ss_pred cccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHH
Confidence 0011111124567788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHhcCCcccc
Q 026342 221 VSTVQQCLWWGLKKHVKC 238 (240)
Q Consensus 221 vG~~~a~ellltG~~i~A 238 (240)
+|..+|++|+++|+.++|
T Consensus 159 vg~~~a~~l~l~g~~~~a 176 (266)
T PRK05981 159 VGKARAMELSLLGEKLPA 176 (266)
T ss_pred hHHHHHHHHHHhCCCcCH
Confidence 999999999999999986
No 40
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-41 Score=291.76 Aligned_cols=167 Identities=26% Similarity=0.381 Sum_probs=146.7
Q ss_pred eeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCC-ccchh
Q 026342 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDG-YADYE 147 (240)
Q Consensus 69 ~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~-~~~~~ 147 (240)
+++.++. +++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.... .....
T Consensus 2 ~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 78 (255)
T PRK07260 2 EHIIYEV--EDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANG-KVFSVGGDLVEMKRAVDEDDVQ 78 (255)
T ss_pred CceEEEE--ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccccCHHHHHhhccccchh
Confidence 4577776 689999999999999999999999999999999999999999999999 8999999998764311 11111
Q ss_pred hh--hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHH
Q 026342 148 NF--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ 225 (240)
Q Consensus 148 ~~--~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~ 225 (240)
.. ....+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+.+++++|++++|..+
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~ 158 (255)
T PRK07260 79 SLVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNR 158 (255)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHH
Confidence 11 1112456778899999999999999999999999999999999999999999999999999989999999999999
Q ss_pred HHHHHhcCCcccc
Q 026342 226 QCLWWGLKKHVKC 238 (240)
Q Consensus 226 a~ellltG~~i~A 238 (240)
+++|+++|++++|
T Consensus 159 a~~l~l~g~~~sa 171 (255)
T PRK07260 159 ATHLAMTGEALTA 171 (255)
T ss_pred HHHHHHhCCccCH
Confidence 9999999999986
No 41
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.7e-41 Score=291.81 Aligned_cols=168 Identities=26% Similarity=0.341 Sum_probs=146.2
Q ss_pred ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchh
Q 026342 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (240)
Q Consensus 68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (240)
++.+.+++ +++|++|+||||++.|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.........
T Consensus 2 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 78 (262)
T PRK07509 2 MDRVSVTI--EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEG-GAFCAGLDVKSVASSPGNAVK 78 (262)
T ss_pred CceEEEEe--eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CCcCCCcCHHHHhcccchhhh
Confidence 34678887 799999999999999999999999999999999999999999999999 799999999876432111111
Q ss_pred hhh------hhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhc
Q 026342 148 NFG------RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221 (240)
Q Consensus 148 ~~~------~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlv 221 (240)
... ...+.+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~ 158 (262)
T PRK07509 79 LLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLV 158 (262)
T ss_pred hHhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHh
Confidence 100 01123456678899999999999999999999999999999999999999999999999998999999999
Q ss_pred CHHHHHHHHhcCCcccc
Q 026342 222 STVQQCLWWGLKKHVKC 238 (240)
Q Consensus 222 G~~~a~ellltG~~i~A 238 (240)
|..+|++|+++|+.++|
T Consensus 159 g~~~a~~l~ltg~~~~a 175 (262)
T PRK07509 159 RKDVARELTYTARVFSA 175 (262)
T ss_pred CHHHHHHHHHcCCCcCH
Confidence 99999999999999986
No 42
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.6e-41 Score=292.87 Aligned_cols=170 Identities=31% Similarity=0.424 Sum_probs=147.4
Q ss_pred CcceeEEEEEEeCC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCcc
Q 026342 66 TEFTDIIYEKAVGE-GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA 144 (240)
Q Consensus 66 ~~~~~v~~~~~~~~-~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~ 144 (240)
+.|+.|.+++ ++ +|++|+||||+++|+||.+|+.+|.++|+.++.|+++|+|||+|.| ++||+|+|++++......
T Consensus 2 ~~~~~i~~~~--~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~ 78 (272)
T PRK06210 2 MAYDAVLYEV--ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAG-RGFCAGADMGELQTIDPS 78 (272)
T ss_pred CCcceEEEEE--CCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCC-CCcccccCHHHHhccCcc
Confidence 3456788887 67 9999999999999999999999999999999999999999999999 799999999876432111
Q ss_pred ch------hhhhh---hhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHH
Q 026342 145 DY------ENFGR---LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSS 215 (240)
Q Consensus 145 ~~------~~~~~---~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~ 215 (240)
.. ..+.. ..+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~ 158 (272)
T PRK06210 79 DGRRDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISW 158 (272)
T ss_pred cccccccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhh
Confidence 00 00100 0123456789999999999999999999999999999999999999999999999999998899
Q ss_pred HHHhhcCHHHHHHHHhcCCcccc
Q 026342 216 IMSRLVSTVQQCLWWGLKKHVKC 238 (240)
Q Consensus 216 ~l~rlvG~~~a~ellltG~~i~A 238 (240)
+|++++|..+|++|+++|+.|+|
T Consensus 159 ~l~~~ig~~~a~~l~ltg~~~~a 181 (272)
T PRK06210 159 ILPRLVGHANALDLLLSARTFYA 181 (272)
T ss_pred hhHhhhCHHHHHHHHHcCCccCH
Confidence 99999999999999999999987
No 43
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.8e-41 Score=293.42 Aligned_cols=172 Identities=27% Similarity=0.354 Sum_probs=147.0
Q ss_pred CCcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCcc
Q 026342 65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA 144 (240)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~ 144 (240)
..+++.|.+++. +++|++|+||||+++|+||.+|+.+|.++|++++.|+++|+|||+|.| ++||+|+|++++......
T Consensus 5 ~~~~~~v~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g-~~FcaG~Dl~~~~~~~~~ 82 (276)
T PRK05864 5 RSTMSLVLVDHP-RPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAG-RGFSSGADHKSAGVVPHV 82 (276)
T ss_pred CCCCCceEEeee-cCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeecCcchhhhhccccc
Confidence 456677888763 689999999999999999999999999999999999999999999999 799999999875321100
Q ss_pred ----chhh--hhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccC-CCchHHHH
Q 026342 145 ----DYEN--FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFD-AGYGSSIM 217 (240)
Q Consensus 145 ----~~~~--~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p-~~g~~~~l 217 (240)
.... .....+.+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| .+|++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l 162 (276)
T PRK05864 83 EGLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLL 162 (276)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheeh
Confidence 0010 0111234567788999999999999999999999999999999999999999999999997 66778899
Q ss_pred HhhcCHHHHHHHHhcCCcccc
Q 026342 218 SRLVSTVQQCLWWGLKKHVKC 238 (240)
Q Consensus 218 ~rlvG~~~a~ellltG~~i~A 238 (240)
++++|..+|++|+++|++++|
T Consensus 163 ~~~vG~~~A~~l~l~g~~~~a 183 (276)
T PRK05864 163 PRAIGSSRAFEIMLTGRDVDA 183 (276)
T ss_pred HhhhCHHHHHHHHHcCCccCH
Confidence 999999999999999999986
No 44
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=5.3e-41 Score=285.01 Aligned_cols=158 Identities=24% Similarity=0.371 Sum_probs=140.7
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHH
Q 026342 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (240)
Q Consensus 78 ~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l 157 (240)
+++|++|+||||++ |+|+.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++............. .+.++
T Consensus 15 ~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~~~~~~~-~~~~~ 91 (222)
T PRK05869 15 DAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGH-EIFSAGDDMPELRTLSAQEADTAAR-VRQQA 91 (222)
T ss_pred cCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcCcCcCHHHHhccChhhHHHHHH-HHHHH
Confidence 58999999999985 999999999999999999999999999999998 7999999999764322211111111 24567
Q ss_pred HHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHHhcCCccc
Q 026342 158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVK 237 (240)
Q Consensus 158 ~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ellltG~~i~ 237 (240)
+.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++.+|++++|..+|++++++|++++
T Consensus 92 ~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~ 171 (222)
T PRK05869 92 VDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFD 171 (222)
T ss_pred HHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcC
Confidence 88999999999999999999999999999999999999999999999999999988999999999999999999999998
Q ss_pred c
Q 026342 238 C 238 (240)
Q Consensus 238 A 238 (240)
|
T Consensus 172 a 172 (222)
T PRK05869 172 A 172 (222)
T ss_pred H
Confidence 6
No 45
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=8.3e-41 Score=291.01 Aligned_cols=165 Identities=30% Similarity=0.412 Sum_probs=143.9
Q ss_pred eeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccc-hh
Q 026342 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD-YE 147 (240)
Q Consensus 69 ~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~-~~ 147 (240)
..+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|++||+|||+|.| ++||+|+|++++....... ..
T Consensus 11 ~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~ 87 (266)
T PRK08139 11 PLLLRED--RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAG-KAFCAGHDLKEMRAARGLAYFR 87 (266)
T ss_pred CceEEEe--eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCC-CcceeccCHHHHhcccchhHHH
Confidence 4567776 799999999999999999999999999999999999999999999999 8999999998764321111 11
Q ss_pred hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHH
Q 026342 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQC 227 (240)
Q Consensus 148 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ 227 (240)
.... .+.+++.++.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++ ++++|+|++|..+|+
T Consensus 88 ~~~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~-~~~~l~r~vG~~~A~ 165 (266)
T PRK08139 88 ALFA-RCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCST-PMVALSRNVPRKQAM 165 (266)
T ss_pred HHHH-HHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCc-cHHHHHHHhCHHHHH
Confidence 1111 23567788999999999999999999999999999999999999999999999999876 567899999999999
Q ss_pred HHHhcCCcccc
Q 026342 228 LWWGLKKHVKC 238 (240)
Q Consensus 228 ellltG~~i~A 238 (240)
+|+++|+.++|
T Consensus 166 ~l~ltg~~~~a 176 (266)
T PRK08139 166 EMLLTGEFIDA 176 (266)
T ss_pred HHHHcCCccCH
Confidence 99999999986
No 46
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.6e-41 Score=290.02 Aligned_cols=165 Identities=34% Similarity=0.483 Sum_probs=147.6
Q ss_pred eeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhh
Q 026342 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (240)
Q Consensus 69 ~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (240)
+.|.+++ +++|++|+||||++.|++|.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++....... ..
T Consensus 5 ~~i~~~~--~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~-~~ 80 (259)
T PRK06688 5 TDLLVEL--EDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAG-RAFSAGGDIKDFPKAPPKP-PD 80 (259)
T ss_pred CceEEEE--ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCccCHHHHhccCcch-HH
Confidence 4577877 789999999999999999999999999999999999999999999999 8999999998765322111 11
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHH
Q 026342 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCL 228 (240)
Q Consensus 149 ~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~e 228 (240)
... .+.+++.++.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|..+|++
T Consensus 81 ~~~-~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~ 159 (259)
T PRK06688 81 ELA-PVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAE 159 (259)
T ss_pred HHH-HHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHH
Confidence 111 3457788999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred HHhcCCcccc
Q 026342 229 WWGLKKHVKC 238 (240)
Q Consensus 229 llltG~~i~A 238 (240)
|+++|+.++|
T Consensus 160 l~l~g~~~~a 169 (259)
T PRK06688 160 MLLLGEPLSA 169 (259)
T ss_pred HHHhCCccCH
Confidence 9999999986
No 47
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=8.3e-41 Score=290.27 Aligned_cols=166 Identities=26% Similarity=0.338 Sum_probs=145.6
Q ss_pred ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCC-CCCcccCCCccccccCCccch
Q 026342 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG-TEAFCSGGDQALRTRDGYADY 146 (240)
Q Consensus 68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g-~~~FcaG~Dl~~~~~~~~~~~ 146 (240)
++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+ +|+|||+|.| +++||+|+|++++..... +.
T Consensus 3 ~~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~-~~ 78 (261)
T PRK11423 3 MQYVNVVT--INKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGR-DP 78 (261)
T ss_pred ccceEEEe--ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccc-cH
Confidence 45678877 7999999999999999999999999999999999888 9999999963 479999999987632211 11
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ 226 (240)
Q Consensus 147 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a 226 (240)
..+.. .+.+++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++++++++++++|+++|
T Consensus 79 ~~~~~-~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a 157 (261)
T PRK11423 79 LSYDD-PLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIV 157 (261)
T ss_pred HHHHH-HHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHHH
Confidence 11111 34567888999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred HHHHhcCCcccc
Q 026342 227 CLWWGLKKHVKC 238 (240)
Q Consensus 227 ~ellltG~~i~A 238 (240)
++|+++|++++|
T Consensus 158 ~~l~l~g~~~~a 169 (261)
T PRK11423 158 KEMFFTASPITA 169 (261)
T ss_pred HHHHHcCCCcCH
Confidence 999999999986
No 48
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=1.2e-40 Score=289.77 Aligned_cols=166 Identities=33% Similarity=0.420 Sum_probs=144.7
Q ss_pred cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch
Q 026342 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (240)
Q Consensus 67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~ 146 (240)
..+.|.++.. +++|++|+||||++.|+||.+|+.+|.++|+.++.|+++|+|||+|.| ++||+|+|++++........
T Consensus 7 ~~~~i~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~ 84 (265)
T PLN02888 7 SENLILVPKS-RNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSG-RAFCSGVDLTAAEEVFKGDV 84 (265)
T ss_pred CCCeEEEEec-cCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CcccCCCCHHHHHhhccchh
Confidence 3345677642 689999999999999999999999999999999999999999999999 79999999986532111111
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ 226 (240)
Q Consensus 147 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a 226 (240)
. . ...+++..+.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|+.+|
T Consensus 85 ~---~-~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 160 (265)
T PLN02888 85 K---D-VETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRA 160 (265)
T ss_pred h---H-HHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHH
Confidence 0 1 12345668899999999999999999999999999999999999999999999999999899999999999999
Q ss_pred HHHHhcCCcccc
Q 026342 227 CLWWGLKKHVKC 238 (240)
Q Consensus 227 ~ellltG~~i~A 238 (240)
++|+++|++|+|
T Consensus 161 ~~l~ltg~~~~a 172 (265)
T PLN02888 161 REVSLTAMPLTA 172 (265)
T ss_pred HHHHHhCCccCH
Confidence 999999999986
No 49
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-40 Score=289.22 Aligned_cols=168 Identities=28% Similarity=0.448 Sum_probs=143.0
Q ss_pred ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCc-cch
Q 026342 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-ADY 146 (240)
Q Consensus 68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~-~~~ 146 (240)
|+.|.++++ +++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++..... ...
T Consensus 3 ~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 80 (262)
T PRK07468 3 FETIRIAVD-ARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAG-KSFCAGGDLGWMRAQMTADRA 80 (262)
T ss_pred cceEEEEEc-CCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CcccCCcCHHHHHhhcccchh
Confidence 445778762 368999999999999999999999999999999999999999999999 79999999987542111 111
Q ss_pred hh-hhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHH
Q 026342 147 EN-FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ 225 (240)
Q Consensus 147 ~~-~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~ 225 (240)
.. .....+.+++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++++++++ +++|..+
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~~ 159 (262)
T PRK07468 81 TRIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVV-ARMGEAN 159 (262)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHH-hhccHHH
Confidence 10 011124567788999999999999999999999999999999999999999999999999988777644 5699999
Q ss_pred HHHHHhcCCcccc
Q 026342 226 QCLWWGLKKHVKC 238 (240)
Q Consensus 226 a~ellltG~~i~A 238 (240)
|++|+++|++++|
T Consensus 160 a~~lll~g~~~~a 172 (262)
T PRK07468 160 ARRVFMSARLFDA 172 (262)
T ss_pred HHHHHHhCCccCH
Confidence 9999999999986
No 50
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-40 Score=287.87 Aligned_cols=161 Identities=33% Similarity=0.441 Sum_probs=140.7
Q ss_pred eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhh
Q 026342 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (240)
Q Consensus 70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~ 149 (240)
.|.+++ +++|++|+||||+++|+||.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++..... ....
T Consensus 4 ~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~--~~~~ 78 (254)
T PRK08252 4 EVLVER--RGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAG-GTFCAGMDLKAFARGER--PSIP 78 (254)
T ss_pred eEEEEE--ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CceEcCcCHHHHhcccc--hhhh
Confidence 477777 789999999999999999999999999999999999999999999999 89999999987643211 1111
Q ss_pred hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHH
Q 026342 150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLW 229 (240)
Q Consensus 150 ~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~el 229 (240)
.. .+..+. ...+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|
T Consensus 79 ~~-~~~~~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l 155 (254)
T PRK08252 79 GR-GFGGLT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMEL 155 (254)
T ss_pred HH-HHHHHH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHH
Confidence 11 122222 247999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcccc
Q 026342 230 WGLKKHVKC 238 (240)
Q Consensus 230 lltG~~i~A 238 (240)
+++|++|+|
T Consensus 156 ~l~g~~~~a 164 (254)
T PRK08252 156 ALTGDMLTA 164 (254)
T ss_pred HHcCCccCH
Confidence 999999986
No 51
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-40 Score=284.95 Aligned_cols=158 Identities=30% Similarity=0.437 Sum_probs=140.8
Q ss_pred EEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhh
Q 026342 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG 150 (240)
Q Consensus 71 v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 150 (240)
|.+++ +++|++||||||+++|+||.+|+.+|.+++++++.+ ++|+|||+|.| ++||+|+|++... ....+.
T Consensus 2 ~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g-~~F~aG~Dl~~~~-----~~~~~~ 72 (243)
T PRK07854 2 IGVTR--DGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQG-TVFCAGADLSGDV-----YADDFP 72 (243)
T ss_pred ceEEE--eCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCC-CceecccCCccch-----hHHHHH
Confidence 45666 689999999999999999999999999999999865 89999999999 8999999998421 011111
Q ss_pred hhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHH
Q 026342 151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWW 230 (240)
Q Consensus 151 ~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ell 230 (240)
. .+.+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|++++|+.+|++|+
T Consensus 73 ~-~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ 151 (243)
T PRK07854 73 D-ALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAML 151 (243)
T ss_pred H-HHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHH
Confidence 1 245677889999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred hcCCcccc
Q 026342 231 GLKKHVKC 238 (240)
Q Consensus 231 ltG~~i~A 238 (240)
++|++|+|
T Consensus 152 ltg~~~~a 159 (243)
T PRK07854 152 LGAEKLTA 159 (243)
T ss_pred HcCCCcCH
Confidence 99999986
No 52
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=2e-40 Score=287.88 Aligned_cols=164 Identities=29% Similarity=0.404 Sum_probs=143.6
Q ss_pred eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhh
Q 026342 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (240)
Q Consensus 70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~ 149 (240)
.|.+++ +++|++|+||||+ .|++|.+|+.+|.++++.++.|++||+|||+|.|+++||+|+|++++....... ..+
T Consensus 4 ~i~~~~--~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~-~~~ 79 (261)
T PRK03580 4 SLHTTR--NGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPD-ADF 79 (261)
T ss_pred eEEEEE--ECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcch-hhh
Confidence 377777 7899999999996 699999999999999999999999999999999867999999998764322111 111
Q ss_pred hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHH
Q 026342 150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLW 229 (240)
Q Consensus 150 ~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~el 229 (240)
.. ....++.++..+|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|+++++++|++++|+.+|+++
T Consensus 80 ~~-~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l 158 (261)
T PRK03580 80 GP-GGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEM 158 (261)
T ss_pred hh-hhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHH
Confidence 11 12345678999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HhcCCcccc
Q 026342 230 WGLKKHVKC 238 (240)
Q Consensus 230 lltG~~i~A 238 (240)
+++|+.++|
T Consensus 159 ~l~g~~~~a 167 (261)
T PRK03580 159 VMTGRRMDA 167 (261)
T ss_pred HHhCCccCH
Confidence 999999986
No 53
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.3e-40 Score=285.71 Aligned_cols=164 Identities=24% Similarity=0.288 Sum_probs=146.4
Q ss_pred ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchh
Q 026342 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (240)
Q Consensus 68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (240)
++.+.++. +++|++|+||||++.|++|.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++...... ..
T Consensus 4 ~~~~~~~~--~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~-~~ 79 (249)
T PRK07110 4 KVVELREV--EEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYP-NYFATGGTQEGLLSLQTG-KG 79 (249)
T ss_pred CceEEEEe--eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCeeCCcChHHHhhccch-hh
Confidence 45677777 799999999999999999999999999999999999999999999999 799999999876432211 11
Q ss_pred hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHH
Q 026342 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQC 227 (240)
Q Consensus 148 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ 227 (240)
.+ . . .+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++++|++++|+.+|+
T Consensus 80 ~~-~-~-~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~ 156 (249)
T PRK07110 80 TF-T-E-ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQ 156 (249)
T ss_pred hH-h-h-HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHHH
Confidence 11 1 1 4677889999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred HHHhcCCcccc
Q 026342 228 LWWGLKKHVKC 238 (240)
Q Consensus 228 ellltG~~i~A 238 (240)
+|+++|++++|
T Consensus 157 ~llltg~~~~a 167 (249)
T PRK07110 157 EMLLTARYYRG 167 (249)
T ss_pred HHHHcCCccCH
Confidence 99999999986
No 54
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.8e-40 Score=289.22 Aligned_cols=166 Identities=27% Similarity=0.420 Sum_probs=144.9
Q ss_pred eeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCC----cc
Q 026342 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDG----YA 144 (240)
Q Consensus 69 ~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~----~~ 144 (240)
+.+.++. +++|++|+||||++.|+|+.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++.... ..
T Consensus 17 ~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~~~~~~~~~~ 93 (277)
T PRK08258 17 RHFLWEV--DDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAG-GNFCSGGDVHEIIGPLTKMDMP 93 (277)
T ss_pred cceEEEE--ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCC-CCcccccCHHHHhccccccChh
Confidence 3577877 799999999999999999999999999999999999999999999999 7999999998763211 11
Q ss_pred chhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccC-CCchHHHHHhhcCH
Q 026342 145 DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFD-AGYGSSIMSRLVST 223 (240)
Q Consensus 145 ~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p-~~g~~~~l~rlvG~ 223 (240)
....+.. .+.+++.+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|++++|.
T Consensus 94 ~~~~~~~-~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~ 172 (277)
T PRK08258 94 ELLAFTR-MTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQ 172 (277)
T ss_pred HHHHHHH-HHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCH
Confidence 1111111 234677889999999999999999999999999999999999999999999999995 56778999999999
Q ss_pred HHHHHHHhcCCcccc
Q 026342 224 VQQCLWWGLKKHVKC 238 (240)
Q Consensus 224 ~~a~ellltG~~i~A 238 (240)
.+|++|+++|+.++|
T Consensus 173 ~~a~~l~ltg~~~~a 187 (277)
T PRK08258 173 GRASELLYTGRSMSA 187 (277)
T ss_pred HHHHHHHHcCCCCCH
Confidence 999999999999986
No 55
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-40 Score=286.00 Aligned_cols=160 Identities=24% Similarity=0.308 Sum_probs=142.4
Q ss_pred EEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhh
Q 026342 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG 150 (240)
Q Consensus 71 v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 150 (240)
|.+++ +++|++|+||||++.|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.... ....
T Consensus 2 i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~---~~~~- 74 (248)
T PRK06072 2 IKVES--REGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEG-RAFCVGADLSEFAPDF---AIDL- 74 (248)
T ss_pred eEEEE--ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCcccCcCHHHHhhhh---HHHH-
Confidence 45666 799999999999999999999999999999999999999999999999 7999999998764311 1111
Q ss_pred hhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHH
Q 026342 151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWW 230 (240)
Q Consensus 151 ~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ell 230 (240)
...+.+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|. ++++++
T Consensus 75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~ll 153 (248)
T PRK06072 75 RETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEIL 153 (248)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHH
Confidence 1124567778999999999999999999999999999999999999999999999999998889999999996 899999
Q ss_pred hcCCcccc
Q 026342 231 GLKKHVKC 238 (240)
Q Consensus 231 ltG~~i~A 238 (240)
++|+.|+|
T Consensus 154 l~g~~~~a 161 (248)
T PRK06072 154 VLGGEFTA 161 (248)
T ss_pred HhCCccCH
Confidence 99999986
No 56
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.6e-40 Score=286.05 Aligned_cols=163 Identities=29% Similarity=0.404 Sum_probs=140.7
Q ss_pred eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhh
Q 026342 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (240)
Q Consensus 70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~ 149 (240)
.|.+++ +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++..........
T Consensus 4 ~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g-~~FcaG~Dl~~~~~~~~~~~~~- 79 (254)
T PRK08259 4 SVRVER--NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAG-GTFCAGADLKAVGTGRGNRLHP- 79 (254)
T ss_pred eEEEEE--ECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCCcChHHHhcccchhhhh-
Confidence 377776 789999999999999999999999999999999999999999999999 7999999998764321111110
Q ss_pred hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHH
Q 026342 150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLW 229 (240)
Q Consensus 150 ~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~el 229 (240)
.. ...+...+.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|.++++++|++++|..+|++|
T Consensus 80 ~~--~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l 157 (254)
T PRK08259 80 SG--DGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDL 157 (254)
T ss_pred hh--cchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHHH
Confidence 00 0111223458999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HhcCCcccc
Q 026342 230 WGLKKHVKC 238 (240)
Q Consensus 230 lltG~~i~A 238 (240)
+++|+.|+|
T Consensus 158 ll~g~~~~a 166 (254)
T PRK08259 158 ILTGRPVDA 166 (254)
T ss_pred HHcCCccCH
Confidence 999999986
No 57
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=4.9e-40 Score=283.92 Aligned_cols=159 Identities=20% Similarity=0.336 Sum_probs=140.2
Q ss_pred EEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhh
Q 026342 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG 150 (240)
Q Consensus 71 v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 150 (240)
|.+++ +++|++|+||||+ .|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++... ......
T Consensus 3 v~~~~--~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g-~~FcaG~Dl~~~~~~---~~~~~~ 75 (251)
T TIGR03189 3 VWLER--DGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEG-PHFSFGASVAEHMPD---QCAAML 75 (251)
T ss_pred EEEEe--eCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCC-CceecCcChhhhCch---hHHHHH
Confidence 66776 6899999999997 6999999999999999999999999999999999 799999999874321 111111
Q ss_pred hhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHH
Q 026342 151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWW 230 (240)
Q Consensus 151 ~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ell 230 (240)
. ...+++.++.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++ ++++|++++|..+|++|+
T Consensus 76 ~-~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~-~~~~l~~~vg~~~a~~l~ 153 (251)
T TIGR03189 76 A-SLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPA-ASCLLPERMGRVAAEDLL 153 (251)
T ss_pred H-HHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCc-hHHHHHHHhCHHHHHHHH
Confidence 1 23467788999999999999999999999999999999999999999999999999864 678999999999999999
Q ss_pred hcCCcccc
Q 026342 231 GLKKHVKC 238 (240)
Q Consensus 231 ltG~~i~A 238 (240)
++|++++|
T Consensus 154 ltg~~~~a 161 (251)
T TIGR03189 154 YSGRSIDG 161 (251)
T ss_pred HcCCCCCH
Confidence 99999986
No 58
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=4e-40 Score=299.89 Aligned_cols=165 Identities=21% Similarity=0.307 Sum_probs=144.3
Q ss_pred eeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccc-h-
Q 026342 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD-Y- 146 (240)
Q Consensus 69 ~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~-~- 146 (240)
..|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++....... .
T Consensus 37 ~~V~~e~--~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~G-kaFcAGgDl~~l~~~~~~~~~~ 113 (401)
T PLN02157 37 YQVLVEG--SGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSG-RAFCAGGDIVSLYHLRKRGSPD 113 (401)
T ss_pred CceEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CCccCCcCHHHHHhhccccchH
Confidence 4477877 689999999999999999999999999999999999999999999999 8999999998764311110 1
Q ss_pred --hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHH
Q 026342 147 --ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV 224 (240)
Q Consensus 147 --~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~ 224 (240)
..+.. ..+.+...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.|++++|+|++|.
T Consensus 114 ~~~~~~~-~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~- 191 (401)
T PLN02157 114 AIREFFS-SLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR- 191 (401)
T ss_pred HHHHHHH-HHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH-
Confidence 11111 23345678999999999999999999999999999999999999999999999999999999999999995
Q ss_pred HHHHHHhcCCcccc
Q 026342 225 QQCLWWGLKKHVKC 238 (240)
Q Consensus 225 ~a~ellltG~~i~A 238 (240)
++++|++||++|+|
T Consensus 192 ~a~~L~LTG~~i~A 205 (401)
T PLN02157 192 LGEYLGLTGLKLSG 205 (401)
T ss_pred HHHHHHHcCCcCCH
Confidence 89999999999986
No 59
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.9e-40 Score=285.24 Aligned_cols=166 Identities=28% Similarity=0.433 Sum_probs=144.3
Q ss_pred ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch-
Q 026342 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY- 146 (240)
Q Consensus 68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~- 146 (240)
...+.++. +++|++|+||||++.|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++........
T Consensus 5 ~~~i~~~~--~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~ 81 (260)
T PRK07827 5 DTLVRYAV--DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTG-GTFCAGADLSEAGGGGGDPYD 81 (260)
T ss_pred CcceEEEe--eCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC-CCccCCcChHHHhhcccCchh
Confidence 34577776 789999999999999999999999999999999999999999999999 89999999987643211111
Q ss_pred --hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHH
Q 026342 147 --ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV 224 (240)
Q Consensus 147 --~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~ 224 (240)
..+.. .+.++++.+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++++++++++++ ..
T Consensus 82 ~~~~~~~-~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~ 159 (260)
T PRK07827 82 AAVARAR-EMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLS-PR 159 (260)
T ss_pred HHHHHHH-HHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhh-HH
Confidence 11111 345678889999999999999999999999999999999999999999999999999998899999875 57
Q ss_pred HHHHHHhcCCcccc
Q 026342 225 QQCLWWGLKKHVKC 238 (240)
Q Consensus 225 ~a~ellltG~~i~A 238 (240)
+|++|+++|+.++|
T Consensus 160 ~a~~l~l~g~~~~a 173 (260)
T PRK07827 160 AAARYYLTGEKFGA 173 (260)
T ss_pred HHHHHHHhCCccCH
Confidence 99999999999986
No 60
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=9.2e-40 Score=297.54 Aligned_cols=165 Identities=20% Similarity=0.291 Sum_probs=145.1
Q ss_pred eeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCc----c
Q 026342 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY----A 144 (240)
Q Consensus 69 ~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~----~ 144 (240)
+.|.+++ ++++++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++.+..... .
T Consensus 42 ~~v~~e~--~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~G-kaFcAGgDl~~l~~~~~~~~~~ 118 (407)
T PLN02851 42 DQVLVEG--RAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSG-RAFCSGADVVSLYHLINEGNVE 118 (407)
T ss_pred CCeEEEE--ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccCCcCHHHHHhhccccchH
Confidence 4577887 689999999999999999999999999999999999999999999999 89999999987643211 1
Q ss_pred chhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHH
Q 026342 145 DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV 224 (240)
Q Consensus 145 ~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~ 224 (240)
....+.+ ..+++...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.|++++|+|++|.
T Consensus 119 ~~~~~f~-~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~- 196 (407)
T PLN02851 119 ECKLFFE-NLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGY- 196 (407)
T ss_pred HHHHHHH-HHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCH-
Confidence 1111111 34566778899999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHhcCCcccc
Q 026342 225 QQCLWWGLKKHVKC 238 (240)
Q Consensus 225 ~a~ellltG~~i~A 238 (240)
.+++|++||++|+|
T Consensus 197 ~g~~L~LTG~~i~a 210 (407)
T PLN02851 197 LGEYLALTGQKLNG 210 (407)
T ss_pred HHHHHHHhCCcCCH
Confidence 49999999999986
No 61
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-39 Score=282.33 Aligned_cols=164 Identities=29% Similarity=0.390 Sum_probs=141.5
Q ss_pred ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchh
Q 026342 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (240)
Q Consensus 68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (240)
|+.|.+++ +++|++|+||||+ .|+||.+|+.+|.++++.+++|+++|+|||+|.| ++||+|+|++++.........
T Consensus 3 ~~~i~~~~--~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~~~ 78 (257)
T PRK06495 3 MSQLKLEV--SDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAG-KVFCAGADLKGRPDVIKGPGD 78 (257)
T ss_pred cceEEEEe--eCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCcccCcCHHhHhhccCCchh
Confidence 55688887 7899999999998 5999999999999999999999999999999999 899999999876432111111
Q ss_pred -hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342 148 -NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ 226 (240)
Q Consensus 148 -~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a 226 (240)
........+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++ +++++|++++|+.+|
T Consensus 79 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a 155 (257)
T PRK06495 79 LRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLT 155 (257)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHH
Confidence 1111123567788999999999999999999999999999999999999999999999986 356789999999999
Q ss_pred HHHHhcCCcccc
Q 026342 227 CLWWGLKKHVKC 238 (240)
Q Consensus 227 ~ellltG~~i~A 238 (240)
++|+++|+.++|
T Consensus 156 ~~lll~g~~~~a 167 (257)
T PRK06495 156 RRMMLTGYRVPA 167 (257)
T ss_pred HHHHHcCCeeCH
Confidence 999999999987
No 62
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.8e-39 Score=284.77 Aligned_cols=173 Identities=18% Similarity=0.130 Sum_probs=143.0
Q ss_pred CCcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhh-----CCCeeEEEEeeCCCCCcccCCCccccc
Q 026342 65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARD-----DSSVGVIILTGKGTEAFCSGGDQALRT 139 (240)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~-----d~~v~vvVltg~g~~~FcaG~Dl~~~~ 139 (240)
...+++++++.+.+++|++|+|| |+++|+||.+|+.+|.++++++++ |+++|+|||+|.++++||+|+|++++.
T Consensus 11 ~~~~~~~~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~ 89 (287)
T PRK08788 11 AGELSQLRVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFA 89 (287)
T ss_pred ccccCceEEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHh
Confidence 34566666665558999999996 999999999999999999999998 899999999999438999999998754
Q ss_pred cCC-ccchhhhh--hhhHHHHHHHHH---cCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCch
Q 026342 140 RDG-YADYENFG--RLNVLDLQVQIR---RLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYG 213 (240)
Q Consensus 140 ~~~-~~~~~~~~--~~~~~~l~~~i~---~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~ 213 (240)
... ........ ...+.+.+.++. .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~ 169 (287)
T PRK08788 90 ELIRAGDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGA 169 (287)
T ss_pred hhccccchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchH
Confidence 210 11111110 001222333333 799999999999999999999999999999999999999999999999989
Q ss_pred HHHHHhhcCHHHHHHHHhcCCcccc
Q 026342 214 SSIMSRLVSTVQQCLWWGLKKHVKC 238 (240)
Q Consensus 214 ~~~l~rlvG~~~a~ellltG~~i~A 238 (240)
+++|++++|..+|++|+++|+.|+|
T Consensus 170 ~~~l~~~vG~~~A~ellltG~~l~A 194 (287)
T PRK08788 170 YSFLARRVGPKLAEELILSGKLYTA 194 (287)
T ss_pred HHHHHHHhhHHHHHHHHHcCCCCCH
Confidence 9999999999999999999999986
No 63
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-39 Score=285.01 Aligned_cols=167 Identities=31% Similarity=0.431 Sum_probs=141.9
Q ss_pred cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCc---
Q 026342 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY--- 143 (240)
Q Consensus 67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~--- 143 (240)
+++.|.++. +++|++|+||||+++|+||.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++.....
T Consensus 2 ~~~~v~~~~--~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G-~~FcaG~Dl~~~~~~~~~~~ 78 (288)
T PRK08290 2 EYEYVRYEV--AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAG-KHFSAGHDLGSGTPGRDRDP 78 (288)
T ss_pred CCceEEEEe--eCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CccccCCCcccccccccccc
Confidence 355688887 799999999999999999999999999999999999999999999999 89999999987531110
Q ss_pred ---------------cchh-hhh--hhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccc
Q 026342 144 ---------------ADYE-NFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV 205 (240)
Q Consensus 144 ---------------~~~~-~~~--~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~ 205 (240)
.... ... ...+.+++..+.++|||+||+|||+|+|||++|+++||||||+++++|++||+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~l 158 (288)
T PRK08290 79 GPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRM 158 (288)
T ss_pred ccccccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCccccc
Confidence 0000 010 1123456678899999999999999999999999999999999999999999999
Q ss_pred cccCCCchHHHHHhhcCHHHHHHHHhcCCcccc
Q 026342 206 GSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVKC 238 (240)
Q Consensus 206 Gl~p~~g~~~~l~rlvG~~~a~ellltG~~i~A 238 (240)
|+ |+ .+.+++++++|.++|++|++||+.|+|
T Consensus 159 Gl-~~-~~~~~l~~~iG~~~A~~llltG~~i~A 189 (288)
T PRK08290 159 GI-PG-VEYFAHPWELGPRKAKELLFTGDRLTA 189 (288)
T ss_pred Cc-Cc-chHHHHHHHhhHHHHHHHHHcCCCCCH
Confidence 98 43 456778999999999999999999986
No 64
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.1e-39 Score=296.35 Aligned_cols=169 Identities=24% Similarity=0.261 Sum_probs=145.2
Q ss_pred CcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccc
Q 026342 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (240)
Q Consensus 66 ~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~ 145 (240)
+.+..|.++. +++|++|+||||+++|+||.+|+.+|.++|+.++.|++||+|||+|.| ++||+|+|++++.......
T Consensus 8 ~~~~~v~~~~--~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g-~~FcaG~Dl~~~~~~~~~~ 84 (379)
T PLN02874 8 PAEEVVLGEE--KGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAG-RAFSAGGDLKMFYDGRESD 84 (379)
T ss_pred CCCCceEEEE--ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CCccCccCHHHHHhhcccc
Confidence 4455678876 799999999999999999999999999999999999999999999999 7999999998764221111
Q ss_pred hh-hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHH
Q 026342 146 YE-NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV 224 (240)
Q Consensus 146 ~~-~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~ 224 (240)
.. .........+..+|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.
T Consensus 85 ~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~- 163 (379)
T PLN02874 85 DSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH- 163 (379)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-
Confidence 11 0011122345678899999999999999999999999999999999999999999999999999999999999885
Q ss_pred HHHHHHhcCCcccc
Q 026342 225 QQCLWWGLKKHVKC 238 (240)
Q Consensus 225 ~a~ellltG~~i~A 238 (240)
++++|+|||++|+|
T Consensus 164 ~a~~l~ltG~~i~a 177 (379)
T PLN02874 164 LGEYLALTGARLNG 177 (379)
T ss_pred HHHHHHHcCCcccH
Confidence 89999999999986
No 65
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=4.7e-40 Score=282.75 Aligned_cols=162 Identities=34% Similarity=0.589 Sum_probs=145.1
Q ss_pred EEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhh
Q 026342 73 YEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRL 152 (240)
Q Consensus 73 ~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~ 152 (240)
|+. +++|++|+||||++.|+||.+++.+|.++|+.++.|+++|+||++|.| ++||+|.|++++..........+. .
T Consensus 2 ~~~--~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~-~~F~~G~Dl~~~~~~~~~~~~~~~-~ 77 (245)
T PF00378_consen 2 YEI--EDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGG-KAFCAGADLKEFLNSDEEEAREFF-R 77 (245)
T ss_dssp EEE--ETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEEST-SESBESB-HHHHHHHHHHHHHHHH-H
T ss_pred EEE--ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecc-cccccccchhhhhccccccccccc-h
Confidence 455 799999999999999999999999999999999999999999999988 899999999877654111112222 2
Q ss_pred hHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHHhc
Q 026342 153 NVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGL 232 (240)
Q Consensus 153 ~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~elllt 232 (240)
.+.+++.++..+|||+||+|||+|+|+|++|+++||+|||+++++|++||+++|++|+++++++|+|++|.++|++++++
T Consensus 78 ~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~ 157 (245)
T PF00378_consen 78 RFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLT 157 (245)
T ss_dssp HHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeecccccccccc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccc
Q 026342 233 KKHVKC 238 (240)
Q Consensus 233 G~~i~A 238 (240)
|+.|+|
T Consensus 158 g~~~~a 163 (245)
T PF00378_consen 158 GEPISA 163 (245)
T ss_dssp TCEEEH
T ss_pred cccchh
Confidence 999986
No 66
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=5.4e-40 Score=295.01 Aligned_cols=165 Identities=24% Similarity=0.396 Sum_probs=144.4
Q ss_pred eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCc-c-ch-
Q 026342 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-A-DY- 146 (240)
Q Consensus 70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~-~-~~- 146 (240)
.|.+++ +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++..... . ..
T Consensus 4 ~v~~~~--~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (342)
T PRK05617 4 EVLAEV--EGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLA 81 (342)
T ss_pred eEEEEE--ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchh
Confidence 477777 799999999999999999999999999999999999999999999998779999999987643111 0 11
Q ss_pred h-hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHH
Q 026342 147 E-NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ 225 (240)
Q Consensus 147 ~-~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~ 225 (240)
. ...+ ...+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .+
T Consensus 82 ~~~~~~-~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~ 159 (342)
T PRK05617 82 ADRFFR-EEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-AL 159 (342)
T ss_pred HHHHHH-HHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-HH
Confidence 0 1111 2345678899999999999999999999999999999999999999999999999999999999999877 78
Q ss_pred HHHHHhcCCcccc
Q 026342 226 QCLWWGLKKHVKC 238 (240)
Q Consensus 226 a~ellltG~~i~A 238 (240)
|++|++||+.|+|
T Consensus 160 a~~llltG~~i~A 172 (342)
T PRK05617 160 GTYLALTGARISA 172 (342)
T ss_pred HHHHHHcCCCCCH
Confidence 9999999999986
No 67
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.9e-39 Score=280.92 Aligned_cols=165 Identities=19% Similarity=0.268 Sum_probs=141.7
Q ss_pred ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchh
Q 026342 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (240)
Q Consensus 68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (240)
|+.+.++. +++|++|+||||++.|+||.+|+.+|.++++.++ +++|+|||+|.| ++||+|+|++++.........
T Consensus 3 ~~~i~~~~--~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g-~~FsaG~Dl~~~~~~~~~~~~ 77 (255)
T PRK07112 3 YQTIRVRQ--QGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLP-EVFCFGADFSAIAEKPDAGRA 77 (255)
T ss_pred CceEEEEe--eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCC-CCcccCcCHHHHhhccccchh
Confidence 55688887 7899999999999999999999999999999998 359999999999 799999999976432111111
Q ss_pred -hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342 148 -NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ 226 (240)
Q Consensus 148 -~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a 226 (240)
........+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++ ++.+|++++|..+|
T Consensus 78 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~-~~~~l~~~vg~~~a 156 (255)
T PRK07112 78 DLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPAC-VLPFLIRRIGTQKA 156 (255)
T ss_pred hhhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcch-hhHHHHHHhCHHHH
Confidence 1111123467788999999999999999999999999999999999999999999999999875 56789999999999
Q ss_pred HHHHhcCCcccc
Q 026342 227 CLWWGLKKHVKC 238 (240)
Q Consensus 227 ~ellltG~~i~A 238 (240)
++|+++|+.++|
T Consensus 157 ~~l~l~g~~~~a 168 (255)
T PRK07112 157 HYMTLMTQPVTA 168 (255)
T ss_pred HHHHHhCCcccH
Confidence 999999999986
No 68
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=3.2e-39 Score=282.60 Aligned_cols=168 Identities=15% Similarity=0.220 Sum_probs=143.4
Q ss_pred ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCC-CCcccCCCccccccCCccc-
Q 026342 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT-EAFCSGGDQALRTRDGYAD- 145 (240)
Q Consensus 68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~-~~FcaG~Dl~~~~~~~~~~- 145 (240)
.+.|.+++. +++|++||||||+ .|+||.+|+.+|.++++++++|+++|+|||||.|+ ++||+|+|++++.......
T Consensus 10 ~~~i~~~~~-~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~ 87 (278)
T PLN03214 10 TPGVRVDRR-PGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAA 87 (278)
T ss_pred CCceEEEEc-CCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchH
Confidence 346777762 4899999999985 79999999999999999999999999999999873 6999999998764211111
Q ss_pred -hhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccc-cCCCchHHHHHhhcCH
Q 026342 146 -YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGS-FDAGYGSSIMSRLVST 223 (240)
Q Consensus 146 -~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl-~p~~g~~~~l~rlvG~ 223 (240)
...+.. ...+++.++.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|+.+++++|++++|+
T Consensus 88 ~~~~~~~-~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~ 166 (278)
T PLN03214 88 RYAEFWL-TQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDR 166 (278)
T ss_pred HHHHHHH-HHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCH
Confidence 111111 1245677899999999999999999999999999999999999999999999999 5888888999999999
Q ss_pred HHHHHHHhcCCcccc
Q 026342 224 VQQCLWWGLKKHVKC 238 (240)
Q Consensus 224 ~~a~ellltG~~i~A 238 (240)
.+|++|+++|+.|+|
T Consensus 167 ~~a~~llltg~~~~a 181 (278)
T PLN03214 167 KVAESLLLRGRLVRP 181 (278)
T ss_pred HHHHHHHHcCCccCH
Confidence 999999999999986
No 69
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.6e-39 Score=279.07 Aligned_cols=156 Identities=24% Similarity=0.275 Sum_probs=135.3
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHH
Q 026342 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (240)
Q Consensus 78 ~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l 157 (240)
+++|++|+||||+ .|+|+.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.................++
T Consensus 9 ~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 86 (249)
T PRK07938 9 EPGIAEVTVDYPP-VNALPSAGWFALADAITAAGADPDTRVVVLRAEG-RGFNAGVDIKELQATPGFTALIDANRGCFAA 86 (249)
T ss_pred CCCEEEEEECCCC-cccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCC-CceecCcCHHHHhhccchhHHHHHHHHHHHH
Confidence 7899999999998 5999999999999999999999999999999999 8999999998754321111100011123466
Q ss_pred HHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHHhcCCccc
Q 026342 158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVK 237 (240)
Q Consensus 158 ~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ellltG~~i~ 237 (240)
+..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++ +++++|++++|+.+|++|+++|+.|+
T Consensus 87 ~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg~~~~ 163 (249)
T PRK07938 87 FRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTAATIT 163 (249)
T ss_pred HHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhCCcCC
Confidence 778999999999999999999999999999999999999999999999986 35678999999999999999999998
Q ss_pred c
Q 026342 238 C 238 (240)
Q Consensus 238 A 238 (240)
|
T Consensus 164 a 164 (249)
T PRK07938 164 A 164 (249)
T ss_pred H
Confidence 6
No 70
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=4.5e-39 Score=286.38 Aligned_cols=158 Identities=30% Similarity=0.430 Sum_probs=138.3
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhh--hhhhHHHHH
Q 026342 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF--GRLNVLDLQ 158 (240)
Q Consensus 81 v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~--~~~~~~~l~ 158 (240)
+++|+||||+++|+|+.+|+.+|.++++.++.|+++++|||||.|+++||+|+|++++........... ....+.+++
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~ 117 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMV 117 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHH
Confidence 356999999999999999999999999999999999999999999669999999987643211011111 111234667
Q ss_pred HHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHHhcCCcccc
Q 026342 159 VQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVKC 238 (240)
Q Consensus 159 ~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ellltG~~i~A 238 (240)
.++..++|||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+++|+.|+|
T Consensus 118 ~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~sA 197 (360)
T TIGR03200 118 SAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSA 197 (360)
T ss_pred HHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCcH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999986
No 71
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=5.4e-39 Score=291.34 Aligned_cols=164 Identities=27% Similarity=0.393 Sum_probs=142.6
Q ss_pred eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccc----
Q 026342 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD---- 145 (240)
Q Consensus 70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~---- 145 (240)
.|.++. +++|++|+||||+++|+||.+|+.+|.++|+.++.|++|++|||+|.| ++||+|+|++++.......
T Consensus 10 ~v~~~~--~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G-~~FcAGgDl~~l~~~~~~~~~~~ 86 (381)
T PLN02988 10 QVLVEE--KSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHG-RAFCAGGDVAAVVRDIEQGNWRL 86 (381)
T ss_pred ceEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCC-CCcccCcCHHHHHhhhcccchhH
Confidence 477776 699999999999999999999999999999999999999999999999 7999999998764211111
Q ss_pred hhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHH
Q 026342 146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ 225 (240)
Q Consensus 146 ~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~ 225 (240)
...+.. ..+.+...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.|++++|+|++|. .
T Consensus 87 ~~~~f~-~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~-~ 164 (381)
T PLN02988 87 GANFFS-DEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF-F 164 (381)
T ss_pred HHHHHH-HHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH-H
Confidence 011111 12234567899999999999999999999999999999999999999999999999999999999999997 6
Q ss_pred HHHHHhcCCcccc
Q 026342 226 QCLWWGLKKHVKC 238 (240)
Q Consensus 226 a~ellltG~~i~A 238 (240)
+++|+|||++++|
T Consensus 165 ~~~l~LTG~~i~a 177 (381)
T PLN02988 165 GEYVGLTGARLDG 177 (381)
T ss_pred HHHHHHcCCCCCH
Confidence 9999999999986
No 72
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.5e-39 Score=282.75 Aligned_cols=167 Identities=27% Similarity=0.401 Sum_probs=141.4
Q ss_pred CcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCcc-
Q 026342 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA- 144 (240)
Q Consensus 66 ~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~- 144 (240)
.+++.|.++. +++|++|+||||+++|+||.+|+.+|.++|++++.|+++|+|||+|.| ++||+|+|++++......
T Consensus 7 ~~~~~v~~e~--~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G-~~FcaG~Dl~~~~~~~~~~ 83 (302)
T PRK08272 7 DNLKTMTYEV--TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAG-KGFCAGYDLSAYAEGSSSG 83 (302)
T ss_pred CCCCeEEEEe--ECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCcCHHHHhhccccc
Confidence 4567788887 689999999999999999999999999999999999999999999999 899999999876432110
Q ss_pred ---c----------------hh---hh-hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecc
Q 026342 145 ---D----------------YE---NF-GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQT 201 (240)
Q Consensus 145 ---~----------------~~---~~-~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~p 201 (240)
. .. .+ ....+.+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~p 163 (302)
T PRK08272 84 GGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYP 163 (302)
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCc
Confidence 0 00 00 0112345677899999999999999999999999999999999999999999
Q ss_pred cccccccCCCchHHHHHhhcCHHHHHHHHhcCCcccc
Q 026342 202 GPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVKC 238 (240)
Q Consensus 202 e~~~Gl~p~~g~~~~l~rlvG~~~a~ellltG~~i~A 238 (240)
|+++|.+|+. ..+++++|.++|++|++||+.|+|
T Consensus 164 e~~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a 197 (302)
T PRK08272 164 PTRVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITG 197 (302)
T ss_pred chhcccCChH---HHHHHHhhHHHHHHHHHcCCccCH
Confidence 9998666643 357889999999999999999986
No 73
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-38 Score=281.16 Aligned_cols=164 Identities=29% Similarity=0.415 Sum_probs=135.5
Q ss_pred ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccc-ccc---C--
Q 026342 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQAL-RTR---D-- 141 (240)
Q Consensus 68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~-~~~---~-- 141 (240)
++.|.+++ +++|++|+||||+++|+||.+|+.+|.++|++++.|++||+|||||.| ++||+|+|+++ +.. .
T Consensus 4 ~~~v~~~~--~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G-~~FcaG~Dl~~~~~~~~~~~~ 80 (298)
T PRK12478 4 FQTLLYTT--AGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAG-RAFSGGYDFGGGFQHWGEAMM 80 (298)
T ss_pred ceEEEEec--cCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccCcCccccccccchhcc
Confidence 45678876 799999999999999999999999999999999999999999999999 89999999985 211 0
Q ss_pred --Cc-cchhhh----hh-hhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccc-cccCCCc
Q 026342 142 --GY-ADYENF----GR-LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV-GSFDAGY 212 (240)
Q Consensus 142 --~~-~~~~~~----~~-~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~-Gl~p~~g 212 (240)
.. .....+ .. .....++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++ |+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~-- 158 (298)
T PRK12478 81 TDGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLT-- 158 (298)
T ss_pred cccccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCch--
Confidence 00 000111 00 011234567899999999999999999999999999999999999999999997 87752
Q ss_pred hHHHHHhhcCHHHHHHHHhcCCcccc
Q 026342 213 GSSIMSRLVSTVQQCLWWGLKKHVKC 238 (240)
Q Consensus 213 ~~~~l~rlvG~~~a~ellltG~~i~A 238 (240)
+++ .+++|..+|++|+++|++|+|
T Consensus 159 ~~~--~~~vG~~~A~~llltg~~i~A 182 (298)
T PRK12478 159 GMW--LYRLSLAKVKWHSLTGRPLTG 182 (298)
T ss_pred hHH--HHHhhHHHHHHHHHcCCccCH
Confidence 333 356999999999999999987
No 74
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=2.3e-39 Score=265.74 Aligned_cols=173 Identities=66% Similarity=1.057 Sum_probs=159.1
Q ss_pred CCcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeC--CCCCcccCCCcccccc-C
Q 026342 65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK--GTEAFCSGGDQALRTR-D 141 (240)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~--g~~~FcaG~Dl~~~~~-~ 141 (240)
..+|++|.|++. -++|+.|+||||+++|||.+..+.||.++|..+..|++|.||||||. |+++||+|+|.+.... .
T Consensus 14 ~~~y~dI~Y~~~-~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~ 92 (282)
T COG0447 14 FEGYEDITYEKS-VDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSG 92 (282)
T ss_pred cCCcceeEEeec-cCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCC
Confidence 457999999994 38999999999999999999999999999999999999999999975 7799999999987665 4
Q ss_pred CccchhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhc
Q 026342 142 GYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221 (240)
Q Consensus 142 ~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlv 221 (240)
.+...+...++++.++.+.|+.+||||||.|+|+|+|||..|.+.||+.||+++|+|++..+++|.|.+++|+.+|.|.+
T Consensus 93 gY~~d~~~~rLnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~V 172 (282)
T COG0447 93 GYVDDDGIPRLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIV 172 (282)
T ss_pred CccCCccCcccchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHh
Confidence 44444445566778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCcccc
Q 026342 222 STVQQCLWWGLKKHVKC 238 (240)
Q Consensus 222 G~~~a~ellltG~~i~A 238 (240)
|.++|+|+++.++.++|
T Consensus 173 GqKkArEIwfLcR~Y~A 189 (282)
T COG0447 173 GQKKAREIWFLCRQYDA 189 (282)
T ss_pred hhhhhHHhhhhhhhccH
Confidence 99999999999999987
No 75
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=8.9e-38 Score=268.00 Aligned_cols=164 Identities=19% Similarity=0.263 Sum_probs=136.7
Q ss_pred EEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCee-EEEEeeCCCCCcccCCCccccccCCccchh-h
Q 026342 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVG-VIILTGKGTEAFCSGGDQALRTRDGYADYE-N 148 (240)
Q Consensus 71 v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~-vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~-~ 148 (240)
+.++. +++|++|+||||++ |+|+.+|+.+|.+++++++.|++++ +||++|.| ++||+|+|++++......... .
T Consensus 2 ~~~~~--~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g-~~FsaG~Dl~~~~~~~~~~~~~~ 77 (239)
T PLN02267 2 CTLEK--RGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEG-KFFSNGFDLAWAQAAGSAPSRLH 77 (239)
T ss_pred ceeEe--cCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCC-CceeCCcCHHHHhccccCHHHHH
Confidence 45565 78999999999985 9999999999999999999998875 77789988 799999999875421111111 1
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEe-CCcEEecccccccccCCCchHHHHHhhcCHHHH-
Q 026342 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ- 226 (240)
Q Consensus 149 ~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias-~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a- 226 (240)
.....+.+++.++.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|+.++++++.+|++++|..++
T Consensus 78 ~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~ 157 (239)
T PLN02267 78 LMVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAAR 157 (239)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHH
Confidence 111134567788999999999999999999999999999999998 568999999999997445568899999999999
Q ss_pred HHHHhcCCcccc
Q 026342 227 CLWWGLKKHVKC 238 (240)
Q Consensus 227 ~ellltG~~i~A 238 (240)
++|+++|+.|+|
T Consensus 158 ~~llltG~~~~a 169 (239)
T PLN02267 158 RDVLLRAAKLTA 169 (239)
T ss_pred HHHHHcCCcCCH
Confidence 699999999986
No 76
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-37 Score=264.25 Aligned_cols=161 Identities=20% Similarity=0.216 Sum_probs=139.7
Q ss_pred eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhh
Q 026342 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (240)
Q Consensus 70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~ 149 (240)
.|.+++ +++|++|+||||+ .|+||.+|+.+|.++++.++ +++|+||++|.| ++||+|+|++++... ......+
T Consensus 4 ~i~~~~--~~~v~~itln~~~-~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g-~~F~~G~Dl~~~~~~-~~~~~~~ 76 (229)
T PRK06213 4 LVSYTL--EDGVATITLDDGK-VNALSPAMIDALNAALDQAE--DDRAVVVITGQP-GIFSGGFDLKVMTSG-AQAAIAL 76 (229)
T ss_pred eEEEEe--cCCEEEEEeCCCC-CCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCC-CceEcCcCHHHHhcc-hHhHHHH
Confidence 477777 7899999999984 79999999999999999988 457999999999 899999999876432 1111111
Q ss_pred hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCC-cEEecccccccccCCCchHHHHHhhcCHHHHHH
Q 026342 150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCL 228 (240)
Q Consensus 150 ~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~-a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~e 228 (240)
.. ...+++.++.++|||+||+|||+|+|||++|+++||||||+++ ++|++||+++|++|++++..++++++|..++++
T Consensus 77 ~~-~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~~ 155 (229)
T PRK06213 77 LT-AGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQR 155 (229)
T ss_pred HH-HHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHHHH
Confidence 11 2456778899999999999999999999999999999999999 999999999999888878888999999999999
Q ss_pred HHhcCCcccc
Q 026342 229 WWGLKKHVKC 238 (240)
Q Consensus 229 llltG~~i~A 238 (240)
|+++|++++|
T Consensus 156 lll~g~~~~a 165 (229)
T PRK06213 156 AVINAEMFDP 165 (229)
T ss_pred HHHcCcccCH
Confidence 9999999986
No 77
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=1.6e-37 Score=302.13 Aligned_cols=166 Identities=23% Similarity=0.326 Sum_probs=145.9
Q ss_pred eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch---
Q 026342 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY--- 146 (240)
Q Consensus 70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~--- 146 (240)
.+.++.. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++........
T Consensus 7 ~i~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~~~~~ 84 (715)
T PRK11730 7 TLQVDWL-EDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAK-DAFIVGADITEFLSLFAAPEEEL 84 (715)
T ss_pred eEEEEEc-CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCC-CccccCcCHHHHhhhccCCHHHH
Confidence 4666632 689999999999999999999999999999999999999999999999 79999999987643111111
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ 226 (240)
Q Consensus 147 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a 226 (240)
..+.. ...+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus 85 ~~~~~-~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A 163 (715)
T PRK11730 85 SQWLH-FANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNA 163 (715)
T ss_pred HHHHH-HHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHH
Confidence 11111 24567788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcccc
Q 026342 227 CLWWGLKKHVKC 238 (240)
Q Consensus 227 ~ellltG~~i~A 238 (240)
++|+++|+.++|
T Consensus 164 ~~llltG~~~~A 175 (715)
T PRK11730 164 LEWIAAGKDVRA 175 (715)
T ss_pred HHHHHcCCcCCH
Confidence 999999999986
No 78
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=4.6e-38 Score=257.78 Aligned_cols=169 Identities=27% Similarity=0.445 Sum_probs=153.0
Q ss_pred eeEEEEEE--eCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch
Q 026342 69 TDIIYEKA--VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (240)
Q Consensus 69 ~~v~~~~~--~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~ 146 (240)
..|.+++- .+.||..|-||||.++|+|+.-|+++|.++++++..|+.+|+|+|++.-+..||+|+||++....+....
T Consensus 27 ~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev 106 (291)
T KOG1679|consen 27 NEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEV 106 (291)
T ss_pred ceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHH
Confidence 34555431 2689999999999999999999999999999999999999999999988889999999999877665554
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ 226 (240)
Q Consensus 147 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a 226 (240)
..|.. .+..++..|.++|.|+||+|+|.|+|||++|+++||+|+|+++++++++|.+++++|++||+++|+|.+|...|
T Consensus 107 ~~fV~-~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~ala 185 (291)
T KOG1679|consen 107 TRFVN-GLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALA 185 (291)
T ss_pred HHHHH-HHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHH
Confidence 44444 46788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcccc
Q 026342 227 CLWWGLKKHVKC 238 (240)
Q Consensus 227 ~ellltG~~i~A 238 (240)
+|+++|++.+++
T Consensus 186 KELIftarvl~g 197 (291)
T KOG1679|consen 186 KELIFTARVLNG 197 (291)
T ss_pred HhHhhhheeccc
Confidence 999999999875
No 79
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=6.2e-37 Score=297.63 Aligned_cols=166 Identities=24% Similarity=0.309 Sum_probs=146.4
Q ss_pred eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch---
Q 026342 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY--- 146 (240)
Q Consensus 70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~--- 146 (240)
.+.++.. +++|++|+||||++.|+||.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++........
T Consensus 7 ~i~~~~~-~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~ 84 (714)
T TIGR02437 7 TIQVTAL-EDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGK-DAFIVGADITEFLGLFALPDAEL 84 (714)
T ss_pred eEEEEEc-cCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CccccCcCHHHHhhcccCCHHHH
Confidence 5677643 689999999999999999999999999999999999999999999999 79999999998643211111
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ 226 (240)
Q Consensus 147 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a 226 (240)
..+.+ ...+++.+|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus 85 ~~~~~-~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A 163 (714)
T TIGR02437 85 IQWLL-FANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNA 163 (714)
T ss_pred HHHHH-HHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHH
Confidence 11111 24567889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcccc
Q 026342 227 CLWWGLKKHVKC 238 (240)
Q Consensus 227 ~ellltG~~i~A 238 (240)
++|+++|+.++|
T Consensus 164 ~~llltG~~~~A 175 (714)
T TIGR02437 164 LEWIASGKENRA 175 (714)
T ss_pred HHHHHcCCcCCH
Confidence 999999999986
No 80
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=1.8e-36 Score=294.60 Aligned_cols=167 Identities=20% Similarity=0.367 Sum_probs=144.4
Q ss_pred eEEEEEEeCCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccc-hh
Q 026342 70 DIIYEKAVGEGIAKITINRP-DRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD-YE 147 (240)
Q Consensus 70 ~v~~~~~~~~~v~~Itlnrp-~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~-~~ 147 (240)
.+.+++. +++|++|+|||| ++.|+||.+|+.+|.+++++++.|+++|+|||+|.++++||+|+|++++....... ..
T Consensus 6 ~~~~~~~-~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~ 84 (708)
T PRK11154 6 AFTLNVR-EDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAE 84 (708)
T ss_pred eEEEEEc-CCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHH
Confidence 3556653 689999999999 68999999999999999999999999999999997657999999998764321111 11
Q ss_pred hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCC--cEEecccccccccCCCchHHHHHhhcCHHH
Q 026342 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ 225 (240)
Q Consensus 148 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~--a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~ 225 (240)
.+ .....+++.+|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|++++|..+
T Consensus 85 ~~-~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~ 163 (708)
T PRK11154 85 AL-ARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVST 163 (708)
T ss_pred HH-HHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHH
Confidence 11 112456778999999999999999999999999999999999987 489999999999999999999999999999
Q ss_pred HHHHHhcCCcccc
Q 026342 226 QCLWWGLKKHVKC 238 (240)
Q Consensus 226 a~ellltG~~i~A 238 (240)
|++|+++|+.|+|
T Consensus 164 A~~llltG~~i~a 176 (708)
T PRK11154 164 ALDMILTGKQLRA 176 (708)
T ss_pred HHHHHHhCCcCCH
Confidence 9999999999986
No 81
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=3.1e-36 Score=249.79 Aligned_cols=163 Identities=37% Similarity=0.599 Sum_probs=146.0
Q ss_pred EEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccc--hhhh
Q 026342 72 IYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD--YENF 149 (240)
Q Consensus 72 ~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~--~~~~ 149 (240)
.+++ +++|++|+||+|++.|++|.+|+++|.++++.++.|+++++|||+|.| +.||+|+|++++....... ...+
T Consensus 2 ~~~~--~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~-~~Fs~G~dl~~~~~~~~~~~~~~~~ 78 (195)
T cd06558 2 LVER--DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAG-KAFCAGADLKELAALSDAGEEARAF 78 (195)
T ss_pred EEEE--ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceEeCcCHHHHhcccccchhHHHH
Confidence 4555 689999999999999999999999999999999999999999999997 8999999999875543222 1122
Q ss_pred hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHH
Q 026342 150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLW 229 (240)
Q Consensus 150 ~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~el 229 (240)
.+ .+.+++.++..++||+||+|||+|+|+|++++++||+||++++++|++||+++|++|+.+++++|++++|.++++++
T Consensus 79 ~~-~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~ 157 (195)
T cd06558 79 IR-ELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARAREL 157 (195)
T ss_pred HH-HHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHH
Confidence 22 45678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcccc
Q 026342 230 WGLKKHVKC 238 (240)
Q Consensus 230 lltG~~i~A 238 (240)
+++|+.++|
T Consensus 158 ~l~g~~~~a 166 (195)
T cd06558 158 LLTGRRISA 166 (195)
T ss_pred HHcCCccCH
Confidence 999999985
No 82
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=1.6e-36 Score=295.43 Aligned_cols=168 Identities=19% Similarity=0.344 Sum_probs=145.4
Q ss_pred cceeEEEEEEeCCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCeeEE-EEeeCCCCCcccCCCccccccCCcc
Q 026342 67 EFTDIIYEKAVGEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVI-ILTGKGTEAFCSGGDQALRTRDGYA 144 (240)
Q Consensus 67 ~~~~v~~~~~~~~~v~~Itlnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~v~vv-Vltg~g~~~FcaG~Dl~~~~~~~~~ 144 (240)
.++.+.++. +++|++|+||||+ +.|+||.+++.+|.+++++++.|+++|++ |++|.| ++||+|+|++++......
T Consensus 11 ~~~~~~~~~--~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g-~~F~aG~Dl~~~~~~~~~ 87 (737)
T TIGR02441 11 ARTHRHYEV--KGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKP-GSFVAGADIQMIAACKTA 87 (737)
T ss_pred CCCeEEEEE--ECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCC-CcceeCcCHHHHhccCCh
Confidence 345577877 7999999999998 58999999999999999999999999965 679998 899999999987532111
Q ss_pred c-hhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCC--cEEecccccccccCCCchHHHHHhhc
Q 026342 145 D-YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPKVGSFDAGYGSSIMSRLV 221 (240)
Q Consensus 145 ~-~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~--a~f~~pe~~~Gl~p~~g~~~~l~rlv 221 (240)
. ...+. ....+++.+|.++||||||+|||+|+|||++|+++||||||+++ ++|++||+++|++|++|++++|+|++
T Consensus 88 ~~~~~~~-~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprli 166 (737)
T TIGR02441 88 QEVTQLS-QEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLT 166 (737)
T ss_pred HHHHHHH-HHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhh
Confidence 1 11111 13456788999999999999999999999999999999999987 58999999999999999999999999
Q ss_pred CHHHHHHHHhcCCcccc
Q 026342 222 STVQQCLWWGLKKHVKC 238 (240)
Q Consensus 222 G~~~a~ellltG~~i~A 238 (240)
|..+|++|+++|++++|
T Consensus 167 G~~~A~~l~ltG~~i~a 183 (737)
T TIGR02441 167 GVPAALDMMLTGKKIRA 183 (737)
T ss_pred CHHHHHHHHHcCCcCCH
Confidence 99999999999999986
No 83
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=5.1e-36 Score=281.84 Aligned_cols=174 Identities=14% Similarity=0.178 Sum_probs=145.4
Q ss_pred CCCCcceeEEEEEEeCCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHhh-hCCCeeEEEEeeCCCCC
Q 026342 63 ESGTEFTDIIYEKAVGEGIAKITINRPDRR-------------NAFRPHTVKELIRAFNDAR-DDSSVGVIILTGKGTEA 128 (240)
Q Consensus 63 ~~~~~~~~v~~~~~~~~~v~~Itlnrp~~~-------------Nal~~~~~~~L~~~l~~~~-~d~~v~vvVltg~g~~~ 128 (240)
+.+..|.+|.+..+++++|++||||||+++ |+|+.+|+.+|.+++++++ +|++||+|||||.| +.
T Consensus 250 ~~~~~~~~~~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G-~~ 328 (546)
T TIGR03222 250 EDGVRYPTVDVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQG-DA 328 (546)
T ss_pred cCCcceeeEEEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCC-CC
Confidence 334556666665544799999999999999 9999999999999999998 45999999999998 66
Q ss_pred -cccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEE-Cchhchhh-HHHhhhcCEEEE-------eCCcEE
Q 026342 129 -FCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV-AGYAVGGG-HVLHMVCDLTIA-------ADNAIF 198 (240)
Q Consensus 129 -FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav-~G~a~GgG-~~lal~~D~ria-------s~~a~f 198 (240)
||+|+|++............... ....++.+|.++|||+||+| ||+|+||| ++|+++||+||| +++++|
T Consensus 329 ~F~aG~Dl~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f 407 (546)
T TIGR03222 329 ELVLAADALLEAHKDHWFVRETIG-YLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAI 407 (546)
T ss_pred ceecCcCccccccccchhHHHHHH-HHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEE
Confidence 99999997422111101111111 23456788999999999999 89999999 999999999999 899999
Q ss_pred ecccccccccCCCchHHHHHhhc-CHHHH--HHHHhcCCcccc
Q 026342 199 GQTGPKVGSFDAGYGSSIMSRLV-STVQQ--CLWWGLKKHVKC 238 (240)
Q Consensus 199 ~~pe~~~Gl~p~~g~~~~l~rlv-G~~~a--~ellltG~~i~A 238 (240)
++||+++|++|+++++++|++++ |..++ ++|+++|+.|+|
T Consensus 408 ~~~e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A 450 (546)
T TIGR03222 408 TLSELNFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDA 450 (546)
T ss_pred eCCccccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCH
Confidence 99999999999999999999998 99999 569999999987
No 84
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=6.6e-36 Score=290.19 Aligned_cols=159 Identities=22% Similarity=0.423 Sum_probs=139.4
Q ss_pred CCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEE-eeCCCCCcccCCCccccccCCcc-chhhhhhhhH
Q 026342 78 GEGIAKITINRP-DRRNAFRPHTVKELIRAFNDARDDSSVGVIIL-TGKGTEAFCSGGDQALRTRDGYA-DYENFGRLNV 154 (240)
Q Consensus 78 ~~~v~~Itlnrp-~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVl-tg~g~~~FcaG~Dl~~~~~~~~~-~~~~~~~~~~ 154 (240)
+++|++|+|||| ++.|+||.+|+.+|.++|++++.|+++|+||| +|.| ++||+|+|++++...... ....... ..
T Consensus 8 ~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g-~~FcaG~Dl~~~~~~~~~~~~~~~~~-~~ 85 (699)
T TIGR02440 8 EDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKP-DNFIAGADISMLAACQTAGEAKALAQ-QG 85 (699)
T ss_pred CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CceeeccCchhhhccCChhHHHHHHH-HH
Confidence 689999999999 68999999999999999999999999999986 5677 799999999986432111 1111111 24
Q ss_pred HHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCC--cEEecccccccccCCCchHHHHHhhcCHHHHHHHHhc
Q 026342 155 LDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGL 232 (240)
Q Consensus 155 ~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~--a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~elllt 232 (240)
.+++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|+|++|..+|++|+++
T Consensus 86 ~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~lllt 165 (699)
T TIGR02440 86 QVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILT 165 (699)
T ss_pred HHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHHc
Confidence 56778899999999999999999999999999999999986 7999999999999999999999999999999999999
Q ss_pred CCcccc
Q 026342 233 KKHVKC 238 (240)
Q Consensus 233 G~~i~A 238 (240)
|+.|+|
T Consensus 166 G~~~~a 171 (699)
T TIGR02440 166 GKQLRA 171 (699)
T ss_pred CCcCCH
Confidence 999986
No 85
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=6.4e-36 Score=281.85 Aligned_cols=173 Identities=14% Similarity=0.148 Sum_probs=145.1
Q ss_pred CCcceeEEEEEEeCCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHhhh-CCCeeEEEEeeCCCCCcc
Q 026342 65 GTEFTDIIYEKAVGEGIAKITINRPDRR-------------NAFRPHTVKELIRAFNDARD-DSSVGVIILTGKGTEAFC 130 (240)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~Itlnrp~~~-------------Nal~~~~~~~L~~~l~~~~~-d~~v~vvVltg~g~~~Fc 130 (240)
+-.|.++.++.+.+++|++||||||+++ |+|+.+|+.+|.+++++++. |+++|+|||||.|+++||
T Consensus 256 ~~~~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~ 335 (550)
T PRK08184 256 GLRYRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAV 335 (550)
T ss_pred ceeeEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEE
Confidence 4467777776655789999999999988 68999999999999999986 799999999999834899
Q ss_pred cCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEEC-chhchhh-HHHhhhcCEEEEe-------CCcEEecc
Q 026342 131 SGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA-GYAVGGG-HVLHMVCDLTIAA-------DNAIFGQT 201 (240)
Q Consensus 131 aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~-G~a~GgG-~~lal~~D~rias-------~~a~f~~p 201 (240)
+|+|++.............. .....++.+|.++||||||+|| |+|+||| ++|+++||+|||+ ++++|++|
T Consensus 336 aG~Dl~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~p 414 (550)
T PRK08184 336 LAADATLLAHKDHWLVRETR-GYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLS 414 (550)
T ss_pred eCCChhhhcccchHHHHHHH-HHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECc
Confidence 99998733211110011111 1234567889999999999997 9999999 9999999999999 99999999
Q ss_pred cccccccCCCchHHHHHhh-cCHHHHHHH--HhcCCcccc
Q 026342 202 GPKVGSFDAGYGSSIMSRL-VSTVQQCLW--WGLKKHVKC 238 (240)
Q Consensus 202 e~~~Gl~p~~g~~~~l~rl-vG~~~a~el--lltG~~i~A 238 (240)
|+++|++|++|++++|+|+ +|..+|++| +++|+.|+|
T Consensus 415 e~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A 454 (550)
T PRK08184 415 ALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDA 454 (550)
T ss_pred cccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCH
Confidence 9999999999999999988 699999997 599999986
No 86
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=1.7e-35 Score=278.28 Aligned_cols=173 Identities=18% Similarity=0.257 Sum_probs=144.9
Q ss_pred CCCcceeEEEEEEeCCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHhh-hCCCeeEEEEeeCCCCCcccC
Q 026342 64 SGTEFTDIIYEKAVGEGIAKITINRPD----------RRNAFRPHTVKELIRAFNDAR-DDSSVGVIILTGKGTEAFCSG 132 (240)
Q Consensus 64 ~~~~~~~v~~~~~~~~~v~~Itlnrp~----------~~Nal~~~~~~~L~~~l~~~~-~d~~v~vvVltg~g~~~FcaG 132 (240)
++++|++|.+++ +++|++|+||||+ |+|+||.+|+.+|.++|+.++ .|+++|+|||||.++++||+|
T Consensus 6 ~~~~~~~v~~~~--~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG 83 (546)
T TIGR03222 6 EPSQYRHWKLTF--DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSG 83 (546)
T ss_pred CCCCCceEEEEe--eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCC
Confidence 355678899988 6899999999976 899999999999999999999 789999999999754899999
Q ss_pred CCccccccCCccchhhh---hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCC--cEEeccccc-cc
Q 026342 133 GDQALRTRDGYADYENF---GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPK-VG 206 (240)
Q Consensus 133 ~Dl~~~~~~~~~~~~~~---~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~--a~f~~pe~~-~G 206 (240)
+|++++........... .......+...+.++|||+||+|||+|+|||++|+++||+||++++ ++|++||++ +|
T Consensus 84 ~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lG 163 (546)
T TIGR03222 84 ANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLG 163 (546)
T ss_pred cCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccC
Confidence 99987643211111111 1101123455678999999999999999999999999999999986 799999997 99
Q ss_pred ccCCCchHHHHH--hhcCHHHHHHHHhcCCcccc
Q 026342 207 SFDAGYGSSIMS--RLVSTVQQCLWWGLKKHVKC 238 (240)
Q Consensus 207 l~p~~g~~~~l~--rlvG~~~a~ellltG~~i~A 238 (240)
++|++++..+++ +++|..+|++|+++|+.|+|
T Consensus 164 l~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A 197 (546)
T TIGR03222 164 VLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRG 197 (546)
T ss_pred cCCccchhhhccccchhCHHHHHHHHHcCCCccH
Confidence 999998888887 79999999999999999986
No 87
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=3e-36 Score=249.03 Aligned_cols=173 Identities=25% Similarity=0.342 Sum_probs=145.3
Q ss_pred CcceeEEEE-EEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccC---
Q 026342 66 TEFTDIIYE-KAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRD--- 141 (240)
Q Consensus 66 ~~~~~v~~~-~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~--- 141 (240)
..|+.+.+. +..+.-|..+.||||.|+|+|+..|+.|+.++|+.+..||++|+|||+|+| |+||+|+|+..+...
T Consensus 16 ~s~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~G-KhFcaGIDl~~~~~~~~~ 94 (292)
T KOG1681|consen 16 HSYKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAG-KHFCAGIDLNDMASDRIL 94 (292)
T ss_pred cccceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCC-cceecccCcchhhhhhcc
Confidence 345544433 223678999999999999999999999999999999999999999999999 999999997643221
Q ss_pred --Cccchhhhh---h---hhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCch
Q 026342 142 --GYADYENFG---R---LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYG 213 (240)
Q Consensus 142 --~~~~~~~~~---~---~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~ 213 (240)
...+..... + ..+++-+..|.+||||+|++|+|+|+|+|+.|..+||+|+|+++|.|..-|+.+|+..+.|.
T Consensus 95 ~~~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGT 174 (292)
T KOG1681|consen 95 QPEGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGT 174 (292)
T ss_pred ccccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhh
Confidence 111111111 1 12456677899999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHhhcC-HHHHHHHHhcCCccccC
Q 026342 214 SSIMSRLVS-TVQQCLWWGLKKHVKCG 239 (240)
Q Consensus 214 ~~~l~rlvG-~~~a~ellltG~~i~A~ 239 (240)
..+||..+| ...++|+.||++.|.|+
T Consensus 175 L~RlpkvVGn~s~~~elafTar~f~a~ 201 (292)
T KOG1681|consen 175 LNRLPKVVGNQSLARELAFTARKFSAD 201 (292)
T ss_pred HhhhhHHhcchHHHHHHHhhhhhcchh
Confidence 899999999 89999999999999885
No 88
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=1.6e-34 Score=272.42 Aligned_cols=171 Identities=19% Similarity=0.265 Sum_probs=143.1
Q ss_pred CcceeEEEEEEeCCCEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHhh-hCCCeeEEEEeeCCCCCcccCCC
Q 026342 66 TEFTDIIYEKAVGEGIAKITINRP-------D---RRNAFRPHTVKELIRAFNDAR-DDSSVGVIILTGKGTEAFCSGGD 134 (240)
Q Consensus 66 ~~~~~v~~~~~~~~~v~~Itlnrp-------~---~~Nal~~~~~~~L~~~l~~~~-~d~~v~vvVltg~g~~~FcaG~D 134 (240)
..++.+.++. +++|++|+|||| + +.|+|+.+|+.+|.+++++++ +|+++|+|||+|.++++||+|+|
T Consensus 12 ~~~~~~~~e~--~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~D 89 (550)
T PRK08184 12 SQYRHWKLSF--DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGAN 89 (550)
T ss_pred CCCceEEEEe--eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccC
Confidence 4577889987 699999999965 3 899999999999999999999 78999999999986589999999
Q ss_pred ccccccCCccchhhhh---hhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCC--cEEeccccc-cccc
Q 026342 135 QALRTRDGYADYENFG---RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPK-VGSF 208 (240)
Q Consensus 135 l~~~~~~~~~~~~~~~---~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~--a~f~~pe~~-~Gl~ 208 (240)
++.+............ +.....+...+.++||||||+|||+|+|||++|+++|||||++++ ++|++||++ +|++
T Consensus 90 L~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~ 169 (550)
T PRK08184 90 IFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVL 169 (550)
T ss_pred HHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccC
Confidence 9876432111111111 101122445778999999999999999999999999999999987 899999997 9999
Q ss_pred CCCchHHHHH--hhcCHHHHHHHHhcCCcccc
Q 026342 209 DAGYGSSIMS--RLVSTVQQCLWWGLKKHVKC 238 (240)
Q Consensus 209 p~~g~~~~l~--rlvG~~~a~ellltG~~i~A 238 (240)
|++++.++|+ +++|..+|++|+++|+.|+|
T Consensus 170 P~~gg~~rl~~~~~vg~~~A~~llltG~~i~A 201 (550)
T PRK08184 170 PGTGGLTRVTDKRKVRRDLADIFCTIEEGVRG 201 (550)
T ss_pred CCcchHHHhhhhhhcCHHHHHHHHHhCCcccH
Confidence 9998888888 78999999999999999986
No 89
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=4.7e-33 Score=234.28 Aligned_cols=172 Identities=26% Similarity=0.386 Sum_probs=150.5
Q ss_pred CCcceeEEEEEEeCCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCc
Q 026342 65 GTEFTDIIYEKAVGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY 143 (240)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~Itln-rp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~ 143 (240)
...+..+.+++ ++|+.+|.+| ||++.|+++.+++.++.++|+.+.+|+++..++++|.| ++||+|.|+..+.....
T Consensus 3 ~~~~~~~vv~~--~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G-~~f~sG~Df~~~~~~~~ 79 (266)
T KOG0016|consen 3 AMRYREIVVTR--ENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNG-SYFCSGLDFSPFAKALD 79 (266)
T ss_pred cccccceEEEe--cCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCc-cEEeeccccchhhhcCC
Confidence 34667788888 8999999999 99999999999999999999999999999999999999 89999999986543222
Q ss_pred cchhhh------hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHH
Q 026342 144 ADYENF------GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIM 217 (240)
Q Consensus 144 ~~~~~~------~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l 217 (240)
.+..+. ....+..+.+.+..+|||+||.|||+|+|.|..+...||+++|+|+++|..|++++|+.|++|.++.+
T Consensus 80 ~d~~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~ 159 (266)
T KOG0016|consen 80 DDANEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTL 159 (266)
T ss_pred CcccccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeee
Confidence 111111 01123346788999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCHHHHHHHHhcCCccccC
Q 026342 218 SRLVSTVQQCLWWGLKKHVKCG 239 (240)
Q Consensus 218 ~rlvG~~~a~ellltG~~i~A~ 239 (240)
|+++|...|.||++.|++++|.
T Consensus 160 p~imG~~~A~E~ll~~~kltA~ 181 (266)
T KOG0016|consen 160 PKIMGSASANEMLLFGEKLTAQ 181 (266)
T ss_pred hHhhchhhHHHHHHhCCcccHH
Confidence 9999999999999999999874
No 90
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.97 E-value=4.5e-32 Score=237.13 Aligned_cols=166 Identities=24% Similarity=0.344 Sum_probs=147.2
Q ss_pred eeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCcccccc---CCcc-
Q 026342 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTR---DGYA- 144 (240)
Q Consensus 69 ~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~---~~~~- 144 (240)
.+|.++. .+....||||||+.+||||.+|+..+.-.|..++.++.+++||+.|.|+++||+|+|+..... +...
T Consensus 38 ~~VL~e~--~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~ 115 (401)
T KOG1684|consen 38 DQVLVEG--KGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETP 115 (401)
T ss_pred CceEEec--CCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCch
Confidence 4688887 789999999999999999999999999999999999999999999998899999999874332 1111
Q ss_pred chhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHH
Q 026342 145 DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV 224 (240)
Q Consensus 145 ~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~ 224 (240)
....+.+ ..+.+...|.++.||.||.+||..+|||++|++..-||||+|++.|++||..+|++|+.|++++|+|+.| .
T Consensus 116 ~~~~fF~-~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~ 193 (401)
T KOG1684|consen 116 EVKKFFT-EEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-Y 193 (401)
T ss_pred HHHHHHH-HHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc-H
Confidence 1222333 3567778999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred HHHHHHhcCCcccc
Q 026342 225 QQCLWWGLKKHVKC 238 (240)
Q Consensus 225 ~a~ellltG~~i~A 238 (240)
...++.|||++++.
T Consensus 194 lg~YLgLTG~rl~G 207 (401)
T KOG1684|consen 194 LGLYLGLTGQRLSG 207 (401)
T ss_pred HHHhhhhccceecc
Confidence 99999999999864
No 91
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=99.96 E-value=4.6e-29 Score=203.44 Aligned_cols=159 Identities=27% Similarity=0.390 Sum_probs=141.7
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHH
Q 026342 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (240)
Q Consensus 78 ~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l 157 (240)
+++|..|+||+|+|+|.|+.+|+.+|.+.+....++.++|+|||+..| +.||+|.||+++..+...+..........++
T Consensus 39 ~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~G-kifSaGH~LKELt~e~g~d~haevFqtc~dv 117 (287)
T KOG1682|consen 39 HNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQG-KIFSAGHNLKELTNEPGSDIHAEVFQTCTDV 117 (287)
T ss_pred ccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCC-ccccccccHHHhhcCccchHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999 8999999999987765443332222246788
Q ss_pred HHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHHhcCCccc
Q 026342 158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVK 237 (240)
Q Consensus 158 ~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ellltG~~i~ 237 (240)
++.|+++|+|+||.|||+|..+|+.|...||++||+++++|..|...+|+|....| .-|.|.+.+..|.+|++||.+|+
T Consensus 118 mn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPG-vAlaRavpRkva~~ML~Tg~Pi~ 196 (287)
T KOG1682|consen 118 MNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPG-VALARAVPRKVAAYMLMTGLPIT 196 (287)
T ss_pred HHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcc-hhHhhhcchhHHHHHHHhCCCCc
Confidence 99999999999999999999999999999999999999999999999999854422 45899999999999999999997
Q ss_pred c
Q 026342 238 C 238 (240)
Q Consensus 238 A 238 (240)
+
T Consensus 197 ~ 197 (287)
T KOG1682|consen 197 G 197 (287)
T ss_pred h
Confidence 5
No 92
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.69 E-value=1.5e-16 Score=130.60 Aligned_cols=123 Identities=19% Similarity=0.131 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECchhc
Q 026342 98 HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (240)
Q Consensus 98 ~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~ 177 (240)
-.+.+|.++++++++|+++|+|||++ +|.|+|+.... .+.+++.++.+++||+||+++|.|.
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~~vvl~~-----~~~gg~~~~~~-------------~~~~~i~~~~~~~kpVia~v~G~a~ 83 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVKAIVLRV-----NSPGGSVTASE-------------VIRAELAAARAAGKPVVASGGGNAA 83 (177)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEe-----eCCCcCHHHHH-------------HHHHHHHHHHhCCCCEEEEECCchh
Confidence 45789999999999999999999986 57888765321 1334566788899999999999999
Q ss_pred hhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHH--------HHHhhcC--HHHHHHHHhcCCcccc
Q 026342 178 GGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSS--------IMSRLVS--TVQQCLWWGLKKHVKC 238 (240)
Q Consensus 178 GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~--------~l~rlvG--~~~a~ellltG~~i~A 238 (240)
|+|+.|+++||+++++++++|+.+.+..+..+...... .+++..| ..+.++++..|+.++|
T Consensus 84 g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a 154 (177)
T cd07014 84 SGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTG 154 (177)
T ss_pred HHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeH
Confidence 99999999999999999999999987766332211111 4455555 8889999988887765
No 93
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.64 E-value=3e-15 Score=123.97 Aligned_cols=130 Identities=18% Similarity=0.177 Sum_probs=99.4
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHH
Q 026342 82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQI 161 (240)
Q Consensus 82 ~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i 161 (240)
++|.|+ ..++..+...+.++|+.+++++ ++.|+|.=. |.|+++.. ...++.+|
T Consensus 2 ~vv~i~-----g~I~~~~~~~l~~~l~~a~~~~-~~~vvl~In-----SpGG~v~~----------------~~~i~~~l 54 (187)
T cd07020 2 YVLEIN-----GAITPATADYLERAIDQAEEGG-ADALIIELD-----TPGGLLDS----------------TREIVQAI 54 (187)
T ss_pred EEEEEe-----eEEChHHHHHHHHHHHHHHhCC-CCEEEEEEE-----CCCCCHHH----------------HHHHHHHH
Confidence 456665 2366777888999999998765 677777521 33444321 12345677
Q ss_pred HcCCCcEEEEEC---chhchhhHHHhhhcCEEEEeCCcEEecccccccccCCC--------------chHHHHHhhcCH-
Q 026342 162 RRLPKPVIAMVA---GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAG--------------YGSSIMSRLVST- 223 (240)
Q Consensus 162 ~~~~kP~IAav~---G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~--------------g~~~~l~rlvG~- 223 (240)
..+|||+|++|+ |+|.|+|+.|+++||+++++++++|+.+++..+..+.. .....+++..|.
T Consensus 55 ~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~ 134 (187)
T cd07020 55 LASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRN 134 (187)
T ss_pred HhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 899999999999 99999999999999999999999999999985544432 134468888898
Q ss_pred -HHHHHHHhcCCcccc
Q 026342 224 -VQQCLWWGLKKHVKC 238 (240)
Q Consensus 224 -~~a~ellltG~~i~A 238 (240)
.++++++++|+.|+|
T Consensus 135 ~~~a~~~l~~g~~~~a 150 (187)
T cd07020 135 AEWAEKAVRESLSLTA 150 (187)
T ss_pred HHHHHHHHHcCCeecH
Confidence 799999999999876
No 94
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.52 E-value=7.5e-14 Score=117.69 Aligned_cols=89 Identities=21% Similarity=0.249 Sum_probs=76.0
Q ss_pred CCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEEC
Q 026342 94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173 (240)
Q Consensus 94 al~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~ 173 (240)
..+...+.+|.++|+++..|+++++|||+ .||.|+|+.... .+.+.+..+..++||+||+++
T Consensus 17 ~~~~~~~~~l~~~l~~a~~d~~v~~ivL~-----~~s~Gg~~~~~~-------------~~~~~l~~~~~~~kpVia~v~ 78 (211)
T cd07019 17 TQGNVGGDTTAAQIRDARLDPKVKAIVLR-----VNSPGGSVTASE-------------VIRAELAAARAAGKPVVVSAG 78 (211)
T ss_pred CCCccCHHHHHHHHHHHhhCCCceEEEEE-----EcCCCcCHHHHH-------------HHHHHHHHHHhCCCCEEEEEC
Confidence 33455789999999999999999999997 689999986531 123445678889999999999
Q ss_pred chhchhhHHHhhhcCEEEEeCCcEEec
Q 026342 174 GYAVGGGHVLHMVCDLTIAADNAIFGQ 200 (240)
Q Consensus 174 G~a~GgG~~lal~~D~rias~~a~f~~ 200 (240)
|.|.|+|+.|+++||++++++++.|+.
T Consensus 79 g~a~s~gy~la~~aD~i~a~~~a~~gs 105 (211)
T cd07019 79 GAAASGGYWISTPANYIVANPSTLTGS 105 (211)
T ss_pred CeehhHHHHHHHhCCEEEEcCCCEEEE
Confidence 999999999999999999999999873
No 95
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.37 E-value=4.7e-12 Score=106.96 Aligned_cols=96 Identities=23% Similarity=0.216 Sum_probs=73.9
Q ss_pred cCCCCCCCC-CHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCC
Q 026342 87 NRPDRRNAF-RPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLP 165 (240)
Q Consensus 87 nrp~~~Nal-~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 165 (240)
+++...|++ +..++.+|.++|+.+++|+++++|||+. +|.|+++... . .+.+.+..+.. +
T Consensus 13 ~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~-----~s~gg~~~~~--------~-----~l~~~l~~~~~-~ 73 (214)
T cd07022 13 PRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI-----DSPGGEVAGV--------F-----ELADAIRAARA-G 73 (214)
T ss_pred CCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE-----eCCCCcHHHH--------H-----HHHHHHHHHhc-C
Confidence 455555654 5689999999999999999999999975 3556554321 0 12222333334 5
Q ss_pred CcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecc
Q 026342 166 KPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQT 201 (240)
Q Consensus 166 kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~p 201 (240)
|||||+++|.|.|+|+.|+++||+++|++.+.|+..
T Consensus 74 KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~i 109 (214)
T cd07022 74 KPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSI 109 (214)
T ss_pred CCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEee
Confidence 999999999999999999999999999999998764
No 96
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.35 E-value=4.4e-12 Score=106.60 Aligned_cols=87 Identities=26% Similarity=0.386 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECchh
Q 026342 97 PHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYA 176 (240)
Q Consensus 97 ~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a 176 (240)
..++.+|.++|+.++.|+++++|||++ +|.|+|+... . .+.+.+..+..++||+||+++|.|
T Consensus 16 ~~~~~~l~~~l~~a~~d~~i~~ivl~~-----~s~Gg~~~~~--------~-----~i~~~i~~~~~~~kpvia~v~g~~ 77 (208)
T cd07023 16 GIGADSLIEQLRKAREDDSVKAVVLRI-----NSPGGSVVAS--------E-----EIYREIRRLRKAKKPVVASMGDVA 77 (208)
T ss_pred CCCHHHHHHHHHHHHhCCCCcEEEEEE-----ECCCCCHHHH--------H-----HHHHHHHHHHhcCCcEEEEECCcc
Confidence 679999999999999999999999987 3678887531 0 123456678888999999999999
Q ss_pred chhhHHHhhhcCEEEEeCCcEEecc
Q 026342 177 VGGGHVLHMVCDLTIAADNAIFGQT 201 (240)
Q Consensus 177 ~GgG~~lal~~D~rias~~a~f~~p 201 (240)
.|+|+.|+++||++++++.+.|+..
T Consensus 78 ~s~g~~lA~aaD~i~a~~~s~~g~i 102 (208)
T cd07023 78 ASGGYYIAAAADKIVANPTTITGSI 102 (208)
T ss_pred hhHHHHHHhhCCEEEECCCCeEEeC
Confidence 9999999999999999999998764
No 97
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.23 E-value=4.7e-11 Score=96.12 Aligned_cols=93 Identities=25% Similarity=0.304 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECc
Q 026342 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG 174 (240)
Q Consensus 95 l~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G 174 (240)
++..++.+|.+.|+.++.|++++.|+|.. .|.|+|+.. ...+...+..++||+|+.++|
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~-----~s~Gg~~~~----------------~~~i~~~l~~~~kpvva~~~g 66 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEV-----NTPGGRVDA----------------GMNIVDALQASRKPVIAYVGG 66 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEE-----ECCCcCHHH----------------HHHHHHHHHHhCCCEEEEECC
Confidence 55688999999999999999999999976 356666432 224556778889999999999
Q ss_pred hhchhhHHHhhhcCEEEEeCCcEEeccccccccc
Q 026342 175 YAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSF 208 (240)
Q Consensus 175 ~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~ 208 (240)
.|.++|+.|+++||.|++.+++.|++..+..+..
T Consensus 67 ~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~ 100 (161)
T cd00394 67 QAASAGYYIATAANKIVMAPGTRVGSHGPIGGYG 100 (161)
T ss_pred hhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecC
Confidence 9999999999999999999999999988876644
No 98
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.14 E-value=3.1e-10 Score=91.45 Aligned_cols=117 Identities=19% Similarity=0.226 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECchhc
Q 026342 98 HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (240)
Q Consensus 98 ~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~ 177 (240)
.+..++.+.|+.++.+..+ .+.|.+.| +++. ....+...|..++||+|+.++|.|.
T Consensus 15 ~~~~~~~~~l~~~~~~~~i-~l~inspG-------G~~~----------------~~~~i~~~i~~~~~pvi~~v~g~a~ 70 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI-TVRINSPG-------GDVF----------------AGLAIYNALKRHKGKVTVKIDGLAA 70 (160)
T ss_pred cCHHHHHHHHHhccCCCCE-EEEEECCC-------CCHH----------------HHHHHHHHHHhcCCCEEEEEcchHH
Confidence 4677888888888877444 34445544 2221 1124567788899999999999999
Q ss_pred hhhHHHhhhcCEEEEeCCcEEecccccccccCCCc---------------hHHHHHhhcC--HHHHHHHHhcCCcccc
Q 026342 178 GGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGY---------------GSSIMSRLVS--TVQQCLWWGLKKHVKC 238 (240)
Q Consensus 178 GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g---------------~~~~l~rlvG--~~~a~ellltG~~i~A 238 (240)
|+|+.|+++||+|+++++++|++.+...+..+... ....+.+..| ....++++..+..++|
T Consensus 71 s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a 148 (160)
T cd07016 71 SAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTA 148 (160)
T ss_pred hHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcH
Confidence 99999999999999999999999877766443321 1223777788 6777888777766654
No 99
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.13 E-value=3.1e-10 Score=95.43 Aligned_cols=84 Identities=25% Similarity=0.455 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCC--CcEEEEECchh
Q 026342 99 TVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLP--KPVIAMVAGYA 176 (240)
Q Consensus 99 ~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--kP~IAav~G~a 176 (240)
...+|.++|+.+.+|+++++|||+.. |.|+|+.. ..++..+|.+++ ||+||.++|.|
T Consensus 14 s~~~l~~~l~~a~~d~~i~~vvl~~~-----s~Gg~~~~----------------~~~l~~~i~~~~~~kpvia~v~g~a 72 (207)
T TIGR00706 14 SPEDFDKKIKRIKDDKSIKALLLRIN-----SPGGTVVA----------------SEEIYEKLKKLKAKKPVVASMGGVA 72 (207)
T ss_pred CHHHHHHHHHHHhhCCCccEEEEEec-----CCCCCHHH----------------HHHHHHHHHHhcCCCCEEEEECCcc
Confidence 35788999999999999999999974 66766542 123455677776 99999999999
Q ss_pred chhhHHHhhhcCEEEEeCCcEEecccc
Q 026342 177 VGGGHVLHMVCDLTIAADNAIFGQTGP 203 (240)
Q Consensus 177 ~GgG~~lal~~D~rias~~a~f~~pe~ 203 (240)
.|+|+.|+++||.++|++++.|+...+
T Consensus 73 ~s~g~~la~aaD~i~a~p~a~vg~iGv 99 (207)
T TIGR00706 73 ASGGYYIAMAADEIVANPGTITGSIGV 99 (207)
T ss_pred chHHHHHHhcCCEEEECCCCeEEeeeE
Confidence 999999999999999999998876433
No 100
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.08 E-value=5.1e-10 Score=107.38 Aligned_cols=143 Identities=18% Similarity=0.198 Sum_probs=101.3
Q ss_pred CCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHH
Q 026342 78 GEGIAKITINRPD--RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVL 155 (240)
Q Consensus 78 ~~~v~~Itlnrp~--~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~ 155 (240)
++.|++|.++.+= ..|..+....+.+.+.++.+..|++||+|||+-..+ |++... .+ .+.
T Consensus 307 ~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSp-----GGs~~a--------se-----~i~ 368 (584)
T TIGR00705 307 QDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSP-----GGSVFA--------SE-----IIR 368 (584)
T ss_pred CCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCC-----CCCHHH--------HH-----HHH
Confidence 6789999998653 234444445677889999999999999999996432 222110 00 122
Q ss_pred HHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEE------eccc------ccccccCCCchHHHHHh----
Q 026342 156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF------GQTG------PKVGSFDAGYGSSIMSR---- 219 (240)
Q Consensus 156 ~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f------~~pe------~~~Gl~p~~g~~~~l~r---- 219 (240)
+.+.++...+|||||.++|.|.+||+.++++||.++|++.+.+ +.+. .++|+.+....+..+.+
T Consensus 369 ~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~ 448 (584)
T TIGR00705 369 RELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLL 448 (584)
T ss_pred HHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCC
Confidence 3345566778999999999999999999999999999999877 5553 57887765444333322
Q ss_pred ------------------------hcCHHH-----HHHHHhcCCcccc
Q 026342 220 ------------------------LVSTVQ-----QCLWWGLKKHVKC 238 (240)
Q Consensus 220 ------------------------lvG~~~-----a~ellltG~~i~A 238 (240)
.|+..| +.+.+..|+.+++
T Consensus 449 ~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg 496 (584)
T TIGR00705 449 RPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTG 496 (584)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCH
Confidence 566665 7778888887764
No 101
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=98.96 E-value=1.8e-09 Score=91.72 Aligned_cols=89 Identities=21% Similarity=0.198 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECc
Q 026342 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG 174 (240)
Q Consensus 95 l~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G 174 (240)
-+..++.+|.++|+++..|++|++|||+..++ .| ++.+++++ .+.+..+...+|||||.++|
T Consensus 26 ~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~-gg-~~~~~~el----------------~~~i~~~~~~~kpVia~~~~ 87 (222)
T cd07018 26 SSELSLRDLLEALEKAAEDDRIKGIVLDLDGL-SG-GLAKLEEL----------------RQALERFRASGKPVIAYADG 87 (222)
T ss_pred cCCccHHHHHHHHHHHhcCCCeEEEEEECCCC-CC-CHHHHHHH----------------HHHHHHHHHhCCeEEEEeCC
Confidence 45678899999999999999999999999884 45 55544432 23345566689999999998
Q ss_pred hhchhhHHHhhhcCEEEEeCCcEEeccc
Q 026342 175 YAVGGGHVLHMVCDLTIAADNAIFGQTG 202 (240)
Q Consensus 175 ~a~GgG~~lal~~D~rias~~a~f~~pe 202 (240)
|.++|+.|+++||.+++.+.+.|+...
T Consensus 88 -~~sggy~lasaad~I~a~p~~~vg~iG 114 (222)
T cd07018 88 -YSQGQYYLASAADEIYLNPSGSVELTG 114 (222)
T ss_pred -CCchhhhhhhhCCEEEECCCceEEeec
Confidence 889999999999999999999998743
No 102
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=98.88 E-value=1.9e-08 Score=82.69 Aligned_cols=96 Identities=24% Similarity=0.361 Sum_probs=73.9
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHH
Q 026342 82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQI 161 (240)
Q Consensus 82 ~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i 161 (240)
.+|.++. .+++.....|.++|+++++++ ++.|||.=. |.|+++. ....+...|
T Consensus 2 ~vi~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in-----spGG~v~----------------~~~~I~~~l 54 (178)
T cd07021 2 YVIPIEG-----EIDPGLAAFVERALKEAKEEG-ADAVVLDID-----TPGGRVD----------------SALEIVDLI 54 (178)
T ss_pred EEEEEee-----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEE-----CcCCCHH----------------HHHHHHHHH
Confidence 3455542 366778888999999998886 566666532 2233332 123467788
Q ss_pred HcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEeccccc
Q 026342 162 RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPK 204 (240)
Q Consensus 162 ~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~ 204 (240)
.++++|+|+.|+|.|.++|+.++++||++++++++.|+.+++-
T Consensus 55 ~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v 97 (178)
T cd07021 55 LNSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPI 97 (178)
T ss_pred HhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeE
Confidence 9999999999999999999999999999999999999987553
No 103
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=97.85 E-value=0.00017 Score=59.00 Aligned_cols=91 Identities=22% Similarity=0.279 Sum_probs=69.9
Q ss_pred CCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEEC
Q 026342 94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173 (240)
Q Consensus 94 al~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~ 173 (240)
.+++.+...|.++++.+++| .++.|+|.=. |.|+++.. ...+...|...++||++.|+
T Consensus 9 ~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in-----SPGG~v~~----------------~~~I~~~i~~~~~pvv~~v~ 66 (172)
T cd07015 9 QITSYTYDQFDRYITIAEQD-NAEAIIIELD-----TPGGRADA----------------AGNIVQRIQQSKIPVIIYVY 66 (172)
T ss_pred EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE-----CCCCCHHH----------------HHHHHHHHHhcCcCEEEEEe
Confidence 36677888889999998866 4677766532 33444321 12345677788999999999
Q ss_pred ---chhchhhHHHhhhcCEEEEeCCcEEeccccccc
Q 026342 174 ---GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVG 206 (240)
Q Consensus 174 ---G~a~GgG~~lal~~D~rias~~a~f~~pe~~~G 206 (240)
|.|..+|.-++++||.+++.+++.++...+-.|
T Consensus 67 p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~ 102 (172)
T cd07015 67 PPGASAASAGTYIALGSHLIAMAPGTSIGACRPILG 102 (172)
T ss_pred cCCCeehhHHHHHHHhcCceEECCCCEEEEcccccc
Confidence 999999999999999999999999998777543
No 104
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=97.82 E-value=3.5e-06 Score=75.43 Aligned_cols=125 Identities=10% Similarity=0.087 Sum_probs=100.4
Q ss_pred CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHH
Q 026342 79 EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQ 158 (240)
Q Consensus 79 ~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~ 158 (240)
.++..+.|+ |+ .|..|.++..+|..-++.+..+..+++.++++...+.|++|.|..+...... .........+++++
T Consensus 65 ~~~~~~dmv-ie-av~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h-~fspa~~m~LlEii 141 (380)
T KOG1683|consen 65 TGFANADMV-IE-AVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMH-FFSPAHWMQLLEII 141 (380)
T ss_pred cccccccee-cc-chhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhcccc-ccCHHHHHHHHHHH
Confidence 477888888 66 6999999999999999999999999999999988889999999876543222 11122233577889
Q ss_pred HHHHcCCCcEEEEECchhchhh--HHHhhhcCEEEEeC--CcEEeccccccc
Q 026342 159 VQIRRLPKPVIAMVAGYAVGGG--HVLHMVCDLTIAAD--NAIFGQTGPKVG 206 (240)
Q Consensus 159 ~~i~~~~kP~IAav~G~a~GgG--~~lal~~D~rias~--~a~f~~pe~~~G 206 (240)
...+.++.|+.+|+||++--++ +-++.+|+|++.-. .-..+..+...+
T Consensus 142 ~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e 193 (380)
T KOG1683|consen 142 LALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLE 193 (380)
T ss_pred HhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHH
Confidence 9999999999999999999998 88999999999973 333355666666
No 105
>PRK10949 protease 4; Provisional
Probab=97.64 E-value=0.001 Score=64.59 Aligned_cols=102 Identities=25% Similarity=0.322 Sum_probs=72.3
Q ss_pred CCCEEEEEEcC-----CCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhh
Q 026342 78 GEGIAKITINR-----PDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRL 152 (240)
Q Consensus 78 ~~~v~~Itlnr-----p~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~ 152 (240)
++.|++|.++- ....+.++. +.+.+.|+++.+|++||+|||+-..+ |+... ..+
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSp-----GGs~~--------ase----- 383 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSP-----GGSVT--------ASE----- 383 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCC-----CCcHH--------HHH-----
Confidence 46677777752 222233444 46778889999999999999987643 32211 011
Q ss_pred hHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEec
Q 026342 153 NVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQ 200 (240)
Q Consensus 153 ~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~ 200 (240)
.+.+.+.++....||+||.+.+.|.-||.-++++||.++|.+.+..+.
T Consensus 384 ~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGS 431 (618)
T PRK10949 384 VIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGS 431 (618)
T ss_pred HHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceee
Confidence 122334455667899999999999999999999999999999877665
No 106
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=97.59 E-value=0.00096 Score=57.95 Aligned_cols=96 Identities=21% Similarity=0.420 Sum_probs=76.7
Q ss_pred CCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 026342 92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171 (240)
Q Consensus 92 ~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAa 171 (240)
.+-++.+..+++.++++....+..+- ++|...| +++. .-.++.+.+.+.+.++++.
T Consensus 69 ~~~I~i~dse~v~raI~~~~~~~~Id-Lii~TpG-------G~v~----------------AA~~I~~~l~~~~~~v~v~ 124 (285)
T PF01972_consen 69 YRYIDIDDSEFVLRAIREAPKDKPID-LIIHTPG-------GLVD----------------AAEQIARALREHPAKVTVI 124 (285)
T ss_pred ceeEcHhhHHHHHHHHHhcCCCCceE-EEEECCC-------CcHH----------------HHHHHHHHHHhCCCCEEEE
Confidence 35688889999999999888776653 4444333 2221 1124566788999999999
Q ss_pred ECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCC
Q 026342 172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAG 211 (240)
Q Consensus 172 v~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~ 211 (240)
|+..|+-+|.-++++||-.++.+.+.+|--++++|-.|..
T Consensus 125 VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~ 164 (285)
T PF01972_consen 125 VPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAA 164 (285)
T ss_pred ECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChH
Confidence 9999999999999999999999999999999999988754
No 107
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=97.55 E-value=0.0017 Score=57.44 Aligned_cols=111 Identities=20% Similarity=0.320 Sum_probs=73.0
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCC----CeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHH
Q 026342 80 GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDS----SVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVL 155 (240)
Q Consensus 80 ~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~----~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~ 155 (240)
.|+.+-.+..=..-++.......+.++++.+.++. .+-+|.|.-.| |+.+.+- ........ ...
T Consensus 69 ~v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSG------GaRlqEg----~~~L~~~a--~i~ 136 (301)
T PRK07189 69 PVVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETG------GVRLQEA----NAGLAAIA--EIM 136 (301)
T ss_pred EEEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC------CcCccch----HHHHHHHH--HHH
Confidence 35555555555678899999999999999887765 13455554433 3333321 00000001 111
Q ss_pred HHHHHHHcCCCcEEEEECch--hchhhHHHhhhcCEEEEeCCcEEecccc
Q 026342 156 DLQVQIRRLPKPVIAMVAGY--AVGGGHVLHMVCDLTIAADNAIFGQTGP 203 (240)
Q Consensus 156 ~l~~~i~~~~kP~IAav~G~--a~GgG~~lal~~D~rias~~a~f~~pe~ 203 (240)
..+..+... +|+|+++-|. |+||+..++.+||++|+++++.+++..+
T Consensus 137 ~~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~iglaGP 185 (301)
T PRK07189 137 RAIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLSGP 185 (301)
T ss_pred HHHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEeccCH
Confidence 122234444 9999999999 9999999999999999999998888543
No 108
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=97.55 E-value=0.00051 Score=55.55 Aligned_cols=89 Identities=17% Similarity=0.154 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECc
Q 026342 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG 174 (240)
Q Consensus 95 l~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G 174 (240)
++..+.+++.+.|..++.++.++.|+|.=. |.|+++. ....++..|..+++|+++.+.|
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In-----SpGG~v~----------------~~~~i~~~i~~~~~~v~~~~~g 67 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN-----SPGGDVF----------------AGMAIYDTIKFIKADVVTIIDG 67 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE-----CCCCcHH----------------HHHHHHHHHHhcCCCceEEEEe
Confidence 457888999999999998876666655432 3344321 1224566778889999999999
Q ss_pred hhchhhHHHhhhcC--EEEEeCCcEEeccccc
Q 026342 175 YAVGGGHVLHMVCD--LTIAADNAIFGQTGPK 204 (240)
Q Consensus 175 ~a~GgG~~lal~~D--~rias~~a~f~~pe~~ 204 (240)
.|.++|.-++++|| .|++.++++|.+....
T Consensus 68 ~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~ 99 (162)
T cd07013 68 LAASMGSVIAMAGAKGKRFILPNAMMMIHQPW 99 (162)
T ss_pred ehhhHHHHHHHcCCCCcEEEecCEEEEEccCc
Confidence 99999999999999 6888888888765543
No 109
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.48 E-value=0.0021 Score=56.21 Aligned_cols=110 Identities=18% Similarity=0.303 Sum_probs=70.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCC----eeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHH
Q 026342 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSS----VGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (240)
Q Consensus 81 v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~----v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (240)
|+.+-.+..=..-++....-+.+.++++.+.+|.. +-+|.|.-.| |+.+.+- ........ ....
T Consensus 61 v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSg------GaRlqEg----~~~L~~~a--~i~~ 128 (274)
T TIGR03133 61 VVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTG------GVRLQEA----NAGLIAIA--EIMR 128 (274)
T ss_pred EEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCC------CcChhhh----HHHHHHHH--HHHH
Confidence 45555555445678888888999999998876221 2355554333 3343321 00000001 1111
Q ss_pred HHHHHHcCCCcEEEEECch--hchhhHHHhhhcCEEEEeCCcEEecccc
Q 026342 157 LQVQIRRLPKPVIAMVAGY--AVGGGHVLHMVCDLTIAADNAIFGQTGP 203 (240)
Q Consensus 157 l~~~i~~~~kP~IAav~G~--a~GgG~~lal~~D~rias~~a~f~~pe~ 203 (240)
-..++... .|+|+++-|+ |.||+..++.+||++|+++++++++..+
T Consensus 129 ~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP 176 (274)
T TIGR03133 129 AILDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGP 176 (274)
T ss_pred HHHHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCH
Confidence 12334444 9999999999 8999999999999999999998888544
No 110
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=97.12 E-value=0.012 Score=52.63 Aligned_cols=96 Identities=15% Similarity=0.168 Sum_probs=64.7
Q ss_pred CCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 026342 92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171 (240)
Q Consensus 92 ~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAa 171 (240)
.-+++++-.....+.++.++...-.=+-++-+.| +++ |.+-.+. .... .+......+....+|+|++
T Consensus 132 ~G~~~p~g~rKa~Rlm~lA~~f~lPIItlvDTpG--A~~-G~~AE~~---------G~~~-aiar~l~~~a~~~VP~IsV 198 (322)
T CHL00198 132 FGMPSPGGYRKALRLMKHANKFGLPILTFIDTPG--AWA-GVKAEKL---------GQGE-AIAVNLREMFSFEVPIICT 198 (322)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCC--cCc-CHHHHHH---------hHHH-HHHHHHHHHHcCCCCEEEE
Confidence 5678899999999999988876433233334333 343 3221110 0011 2333455678899999999
Q ss_pred ECchhchhhHHHhhhcCEEEEeCCcEEec
Q 026342 172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQ 200 (240)
Q Consensus 172 v~G~a~GgG~~lal~~D~rias~~a~f~~ 200 (240)
|-|.|.|||.-....||++++.+++.|+.
T Consensus 199 ViGeggsGGAlal~~aD~V~m~e~a~~sV 227 (322)
T CHL00198 199 IIGEGGSGGALGIGIGDSIMMLEYAVYTV 227 (322)
T ss_pred EeCcccHHHHHhhhcCCeEEEeCCeEEEe
Confidence 99999888865556699999999999875
No 111
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=97.12 E-value=0.003 Score=51.76 Aligned_cols=91 Identities=23% Similarity=0.300 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHHhhhCCCee--EEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 026342 95 FRPHTVKELIRAFNDARDDSSVG--VIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172 (240)
Q Consensus 95 l~~~~~~~L~~~l~~~~~d~~v~--vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav 172 (240)
+|.++...+.+.|..++.++..+ .|.|.+.| +|+. ....+...|..++.|+++.+
T Consensus 25 I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpG-------G~v~----------------~g~~i~~~i~~~~~~v~t~~ 81 (182)
T PF00574_consen 25 IDEESANRLISQLLYLENEDKNKPINIYINSPG-------GDVD----------------AGLAIYDAIRSSKAPVTTVV 81 (182)
T ss_dssp BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECE-------BCHH----------------HHHHHHHHHHHSSSEEEEEE
T ss_pred cCHHHHHHHHHHHHHHhccCCCceEEEEEcCCC-------CccH----------------HHHHHHHHHHhcCCCeEEEE
Confidence 78899999988887774322222 23345444 3321 12345678889999999999
Q ss_pred CchhchhhHHHhhhcCE--EEEeCCcEEeccccccccc
Q 026342 173 AGYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSF 208 (240)
Q Consensus 173 ~G~a~GgG~~lal~~D~--rias~~a~f~~pe~~~Gl~ 208 (240)
.|.|.+.|..++++||. |++.+++.|.+.++..+..
T Consensus 82 ~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~ 119 (182)
T PF00574_consen 82 LGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSG 119 (182)
T ss_dssp EEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEE
T ss_pred eCccccceehhhhcCCcCceeeeecCEEEeecceeecc
Confidence 99999999999999999 8999999999988876643
No 112
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=97.07 E-value=0.016 Score=50.34 Aligned_cols=96 Identities=19% Similarity=0.288 Sum_probs=66.5
Q ss_pred CCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 026342 92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171 (240)
Q Consensus 92 ~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAa 171 (240)
.-+++++-.....+.++.+++..-.=+-++-+.| ++. |.+-++ ....+ .+...+..+....+|+|++
T Consensus 76 ~G~~~~~g~rKa~R~~~lA~~~~lPvV~lvDtpG--a~~-g~~aE~---------~G~~~-~ia~~~~~~s~~~VP~IsV 142 (256)
T PRK12319 76 FGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAG--AYP-GVGAEE---------RGQGE-AIARNLMEMSDLKVPIIAI 142 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCC--cCC-CHhHHh---------ccHHH-HHHHHHHHHhCCCCCEEEE
Confidence 4678899999999999988766433233334333 332 332110 00111 2334556778899999999
Q ss_pred ECchhchhhHHHhhhcCEEEEeCCcEEec
Q 026342 172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQ 200 (240)
Q Consensus 172 v~G~a~GgG~~lal~~D~rias~~a~f~~ 200 (240)
|-|.|.|||......||++++.+++.|+.
T Consensus 143 I~G~~~gGgA~a~~~~D~v~m~~~a~~~v 171 (256)
T PRK12319 143 IIGEGGSGGALALAVADQVWMLENTMYAV 171 (256)
T ss_pred EeCCcCcHHHHHhhcCCEEEEecCceEEE
Confidence 99999999888888999999999998875
No 113
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.01 E-value=0.0037 Score=55.98 Aligned_cols=89 Identities=27% Similarity=0.415 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECchhch
Q 026342 99 TVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVG 178 (240)
Q Consensus 99 ~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~G 178 (240)
-.+.+.+.|+.+..|+.++.|+|.=. |.|+.... .. .+.+.+.++..-. |+++.|++.|.-
T Consensus 81 ~~~~~~~~l~~~~~~~~vk~vvL~in-----SPGG~v~a--------s~-----~i~~~l~~l~~~~-PV~v~v~~~AAS 141 (317)
T COG0616 81 GGDDIEEILRAARADPSVKAVVLRIN-----SPGGSVVA--------SE-----LIARALKRLRAKK-PVVVSVGGYAAS 141 (317)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEEEE-----CcCCchhH--------HH-----HHHHHHHHHhhcC-CEEEEECCeecc
Confidence 35566777888889999999888643 22333211 00 1222233444433 999999999999
Q ss_pred hhHHHhhhcCEEEEeCCcEEeccccccc
Q 026342 179 GGHVLHMVCDLTIAADNAIFGQTGPKVG 206 (240)
Q Consensus 179 gG~~lal~~D~rias~~a~f~~pe~~~G 206 (240)
||.-++++||.+||++.+..|--.+..+
T Consensus 142 GGY~IA~aAd~I~a~p~si~GSIGVi~~ 169 (317)
T COG0616 142 GGYYIALAADKIVADPSSITGSIGVISG 169 (317)
T ss_pred hhhhhhccCCEEEecCCceeeeceeEEe
Confidence 9999999999999999999886555444
No 114
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=96.96 E-value=0.0035 Score=52.44 Aligned_cols=88 Identities=15% Similarity=0.125 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHHHHHHhhhCCCeeEE--EEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 026342 94 AFRPHTVKELIRAFNDARDDSSVGVI--ILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171 (240)
Q Consensus 94 al~~~~~~~L~~~l~~~~~d~~v~vv--Vltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAa 171 (240)
.++..+...+...|..++.++..+-| .|.+.| +|+. ....++..|...+.|+++.
T Consensus 39 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG-------G~v~----------------~g~~I~d~i~~~~~~v~t~ 95 (200)
T PRK00277 39 EVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG-------GSVT----------------AGLAIYDTMQFIKPDVSTI 95 (200)
T ss_pred EECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC-------CcHH----------------HHHHHHHHHHhcCCCEEEE
Confidence 36788899999998888765433333 333333 3321 1123456677888899999
Q ss_pred ECchhchhhHHHhhhcC--EEEEeCCcEEeccccc
Q 026342 172 VAGYAVGGGHVLHMVCD--LTIAADNAIFGQTGPK 204 (240)
Q Consensus 172 v~G~a~GgG~~lal~~D--~rias~~a~f~~pe~~ 204 (240)
+.|.|.+.|..++++++ .|++.++++|.+..+.
T Consensus 96 ~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~ 130 (200)
T PRK00277 96 CIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPL 130 (200)
T ss_pred EEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCc
Confidence 99999999999998754 5777777777665543
No 115
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=96.89 E-value=0.0041 Score=50.63 Aligned_cols=92 Identities=17% Similarity=0.161 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECc
Q 026342 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG 174 (240)
Q Consensus 95 l~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G 174 (240)
++.+...++...+..++.++..+.|+|.=. |.|+|+.. ...+...|...+.|+++.+.|
T Consensus 18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~in-----SpGG~v~~----------------~~~i~~~l~~~~~~v~t~~~g 76 (171)
T cd07017 18 IDDEVANLIIAQLLYLESEDPKKPIYLYIN-----SPGGSVTA----------------GLAIYDTMQYIKPPVSTICLG 76 (171)
T ss_pred EcHHHHHHHHHHHHHHHccCCCCceEEEEE-----CCCCCHHH----------------HHHHHHHHHhcCCCEEEEEEe
Confidence 567888899999999888765444444322 22333221 123455677789999999999
Q ss_pred hhchhhHHHhhhcC--EEEEeCCcEEecccccccc
Q 026342 175 YAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGS 207 (240)
Q Consensus 175 ~a~GgG~~lal~~D--~rias~~a~f~~pe~~~Gl 207 (240)
.|.++|.-+++++| .|++.+++.|.+.++..+.
T Consensus 77 ~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~ 111 (171)
T cd07017 77 LAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGA 111 (171)
T ss_pred EehhHHHHHHHcCCCCCEEEccchHHHHcCCCccC
Confidence 99999999999999 7999999999888876553
No 116
>PRK11778 putative inner membrane peptidase; Provisional
Probab=96.84 E-value=0.011 Score=53.10 Aligned_cols=104 Identities=19% Similarity=0.179 Sum_probs=65.5
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHH
Q 026342 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (240)
Q Consensus 78 ~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l 157 (240)
.+.|++|.++-+=..+ ....+.+++...++.+..+ ..|||+-..| |+.+... . . ....
T Consensus 89 ~~~v~VI~~~G~I~~~-~~~~l~e~i~a~l~~A~~~---~aVvLridSp-----GG~v~~s--------~-~----a~~~ 146 (330)
T PRK11778 89 KPRLFVLDFKGDIDAS-EVESLREEITAILAVAKPG---DEVLLRLESP-----GGVVHGY--------G-L----AASQ 146 (330)
T ss_pred CCeEEEEEEEEEECCC-cchhhHHHHHHHHHhccCC---CeEEEEEeCC-----CCchhHH--------H-H----HHHH
Confidence 3568888887542111 1123445666656555433 4666665432 3332110 0 0 0111
Q ss_pred HHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccc
Q 026342 158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGP 203 (240)
Q Consensus 158 ~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~ 203 (240)
+.++....||+|+.+++.|.-||.-|+++||-++|.+.+.++.-.+
T Consensus 147 l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGV 192 (330)
T PRK11778 147 LQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGV 192 (330)
T ss_pred HHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeee
Confidence 3456778899999999999999999999999999999988876443
No 117
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=96.76 E-value=0.0066 Score=51.06 Aligned_cols=89 Identities=17% Similarity=0.099 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECc
Q 026342 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG 174 (240)
Q Consensus 95 l~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G 174 (240)
++..+..++.+.|..++.++..+.|+|.=. |.|+++.. ...++..|..++.|+++.+.|
T Consensus 44 I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN-----SpGG~v~~----------------g~~I~d~i~~~~~~v~t~~~G 102 (207)
T PRK12553 44 VDDASANDVMAQLLVLESIDPDRDITLYIN-----SPGGSVTA----------------GDAIYDTIQFIRPDVQTVCTG 102 (207)
T ss_pred ECHHHHHHHHHHHHHHHhCCCCCCEEEEEe-----CCCCcHHH----------------HHHHHHHHHhcCCCcEEEEEe
Confidence 778999999999999887543333333211 22333221 224566778888999999999
Q ss_pred hhchhhHHHhhhcC--EEEEeCCcEEeccccc
Q 026342 175 YAVGGGHVLHMVCD--LTIAADNAIFGQTGPK 204 (240)
Q Consensus 175 ~a~GgG~~lal~~D--~rias~~a~f~~pe~~ 204 (240)
.|.+.|.-++++|| .|++.+++.|.+..+.
T Consensus 103 ~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~ 134 (207)
T PRK12553 103 QAASAGAVLLAAGTPGKRFALPNARILIHQPS 134 (207)
T ss_pred ehhhHHHHHHHcCCcCcEEECCCchhhhcCcc
Confidence 99999999999999 5999999999887765
No 118
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=96.68 E-value=0.0085 Score=58.01 Aligned_cols=85 Identities=19% Similarity=0.199 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECchhc
Q 026342 98 HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (240)
Q Consensus 98 ~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~ 177 (240)
..+.++.++++.+.+|+.|++|||.-.+ +.|.++... + .+.+.+..+....|||||..++++
T Consensus 76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~----~~g~~~~~~--------~-----ei~~ai~~fk~sgKpVvA~~~~~~- 137 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIEGLVFDLSN----FSGWDSPHL--------V-----EIGSALSEFKDSGKPVYAYGTNYS- 137 (584)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEccC----CCCCCHHHH--------H-----HHHHHHHHHHhcCCeEEEEEcccc-
Confidence 4667899999999999999999999753 123332211 0 122334455567899999998876
Q ss_pred hhhHHHhhhcCEEEEeCCcEEec
Q 026342 178 GGGHVLHMVCDLTIAADNAIFGQ 200 (240)
Q Consensus 178 GgG~~lal~~D~rias~~a~f~~ 200 (240)
-+|.-|+.+||-+++.+.+.+++
T Consensus 138 s~~YylAs~AD~I~~~p~G~v~~ 160 (584)
T TIGR00705 138 QGQYYLASFADEIILNPMGSVDL 160 (584)
T ss_pred chhhhhhhhCCEEEECCCceEEe
Confidence 57899999999999998877755
No 119
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=96.67 E-value=0.055 Score=48.33 Aligned_cols=96 Identities=19% Similarity=0.175 Sum_probs=64.2
Q ss_pred CCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 026342 92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171 (240)
Q Consensus 92 ~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAa 171 (240)
.-+++++-.....+.++.++.-.-.=+-++-+.| +++ |.+.++. ...+ .+...+..+....+|+|++
T Consensus 129 ~G~~~p~g~rKa~R~m~lA~~f~iPvVtlvDTpG--a~~-g~~aE~~---------G~~~-aia~~l~a~s~~~VP~IsV 195 (316)
T TIGR00513 129 FGMPAPEGYRKALRLMKMAERFKMPIITFIDTPG--AYP-GIGAEER---------GQSE-AIARNLREMARLGVPVICT 195 (316)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCC--CCC-CHHHHHH---------HHHH-HHHHHHHHHHcCCCCEEEE
Confidence 4678899999999999988766433233333333 332 3222111 0011 2334566678999999999
Q ss_pred ECchhchhhHHHhhhcCEEEEeCCcEEec
Q 026342 172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQ 200 (240)
Q Consensus 172 v~G~a~GgG~~lal~~D~rias~~a~f~~ 200 (240)
|-|.|.|||......||++++.+++.++.
T Consensus 196 ViGeggsGGAla~~~aD~v~m~~~a~~sV 224 (316)
T TIGR00513 196 VIGEGGSGGALAIGVGDKVNMLEYSTYSV 224 (316)
T ss_pred EecccccHHHhhhccCCEEEEecCceEEe
Confidence 99999777775555699999999998875
No 120
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=96.66 E-value=0.015 Score=55.14 Aligned_cols=108 Identities=19% Similarity=0.265 Sum_probs=71.6
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCC--CccccccCCccchhhhhhhhHHHHHH
Q 026342 82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGG--DQALRTRDGYADYENFGRLNVLDLQV 159 (240)
Q Consensus 82 ~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~--Dl~~~~~~~~~~~~~~~~~~~~~l~~ 159 (240)
.++..+.--...++.......+.++++.+.++.- -+|.|.- |.|+ ++++- ........+ ...-..
T Consensus 60 ~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~~-P~v~l~d------sgGa~~r~~eg----~~~l~~~g~--i~~~~~ 126 (493)
T PF01039_consen 60 VVIAQDFTVLGGSVGEVHGEKIARAIELALENGL-PLVYLVD------SGGAFLRMQEG----VESLMGMGR--IFRAIA 126 (493)
T ss_dssp EEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHTE-EEEEEEE------ESSBCGGGGGH----HHHHHHHHH--HHHHHH
T ss_pred EEEEeccceecCCCCcccceeeehHHHHHHHcCC-CcEEecc------ccccccccchh----hhhhhhhHH--HHHHHH
Confidence 3444444445788999999999999999887754 3444433 2233 33321 111111111 222234
Q ss_pred HHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCC-cEEecccc
Q 026342 160 QIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGP 203 (240)
Q Consensus 160 ~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~-a~f~~pe~ 203 (240)
++.. ..|+|+++.|+|.|||..++..||++|+.++ +.+++..+
T Consensus 127 ~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~GP 170 (493)
T PF01039_consen 127 RLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLAGP 170 (493)
T ss_dssp HHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESSTH
T ss_pred HHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEeccc
Confidence 5566 9999999999999999999999999999998 88887443
No 121
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=96.62 E-value=0.048 Score=53.45 Aligned_cols=96 Identities=18% Similarity=0.205 Sum_probs=65.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 026342 92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171 (240)
Q Consensus 92 ~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAa 171 (240)
.-+++++-.....+.++.++...-.=+-++-+.| +++ |.+.+.. ...+ .+......+....+|+|++
T Consensus 220 fG~~~peGyRKAlRlmkLAekfgLPIVtLVDTpG--A~p-G~~AEe~---------Gq~~-aIArnl~amasl~VP~ISV 286 (762)
T PLN03229 220 FGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPG--AYA-DLKSEEL---------GQGE-AIAHNLRTMFGLKVPIVSI 286 (762)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCC--cCC-CchhHHH---------hHHH-HHHHHHHHHhCCCCCEEEE
Confidence 5578888899999999888766433233344443 333 3222211 0111 2334456778999999999
Q ss_pred ECchhchhhHHHhhhcCEEEEeCCcEEec
Q 026342 172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQ 200 (240)
Q Consensus 172 v~G~a~GgG~~lal~~D~rias~~a~f~~ 200 (240)
|-|.|.|||......||+++|.+++.|+.
T Consensus 287 ViGeggSGGAlA~g~aD~VlMle~A~~sV 315 (762)
T PLN03229 287 VIGEGGSGGALAIGCANKLLMLENAVFYV 315 (762)
T ss_pred EeCCcchHHHHHhhcCCEEEEecCCeEEe
Confidence 99999888887777899999999988765
No 122
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=96.60 E-value=0.047 Score=50.32 Aligned_cols=95 Identities=18% Similarity=0.190 Sum_probs=63.1
Q ss_pred CCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 026342 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172 (240)
Q Consensus 93 Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav 172 (240)
.+++++-.....+.++.++...-.=+-++-..| ++ .|.+-++. .... .+......+..+.+|+|+.|
T Consensus 200 G~~~peGyRKAlR~mklAekf~lPIVtLVDTpG--A~-pG~~AEe~---------Gqa~-aIAr~l~ams~l~VPiISVV 266 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKFGFPILTFVDTPG--AY-AGIKAEEL---------GQGE-AIAFNLREMFGLRVPIIATV 266 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCC--cC-CCHHHHHH---------hHHH-HHHHHHHHHhcCCCCEEEEE
Confidence 568899999999999988876433233333333 22 33222110 0111 23344667789999999999
Q ss_pred CchhchhhHHHhhhcCEEEEeCCcEEec
Q 026342 173 AGYAVGGGHVLHMVCDLTIAADNAIFGQ 200 (240)
Q Consensus 173 ~G~a~GgG~~lal~~D~rias~~a~f~~ 200 (240)
-|.+.+||.....+||+++|.+++.++.
T Consensus 267 iGeGgSGGAlalg~aD~VlMle~A~ysV 294 (431)
T PLN03230 267 IGEGGSGGALAIGCGNRMLMMENAVYYV 294 (431)
T ss_pred eCCCCcHHHHHhhcCCEEEEecCCEEEe
Confidence 9999666655555799999999998765
No 123
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=96.52 E-value=0.064 Score=47.44 Aligned_cols=110 Identities=17% Similarity=0.197 Sum_probs=71.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHH
Q 026342 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ 160 (240)
Q Consensus 81 v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (240)
|+...++..=..-++....-+.+.++++.+.+.. +=+|++...| |+.+.+ .........+ ....+..
T Consensus 135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~r-lPlV~l~~SG------GARmQE----g~~sL~qmak--~saa~~~ 201 (296)
T CHL00174 135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNES-LPLIIVCASG------GARMQE----GSLSLMQMAK--ISSALYD 201 (296)
T ss_pred EEEEEECCcccccCcCHHHHHHHHHHHHHHHHcC-CCEEEEECCC------Cccccc----cchhhhhhHH--HHHHHHH
Confidence 4555555444577899999999999999887664 4466665544 344332 1100001111 1111222
Q ss_pred -HHcCCCcEEEEECchhchhhHHH-hhhcCEEEEeCCcEEecccc
Q 026342 161 -IRRLPKPVIAMVAGYAVGGGHVL-HMVCDLTIAADNAIFGQTGP 203 (240)
Q Consensus 161 -i~~~~kP~IAav~G~a~GgG~~l-al~~D~rias~~a~f~~pe~ 203 (240)
...-..|.|+++.|+|.||+... ++.||++|+.+++.+++..+
T Consensus 202 ~~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGP 246 (296)
T CHL00174 202 YQSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGK 246 (296)
T ss_pred HHHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCH
Confidence 22457999999999999998776 67799999988998888554
No 124
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=96.47 E-value=0.087 Score=47.13 Aligned_cols=95 Identities=20% Similarity=0.256 Sum_probs=64.5
Q ss_pred CCCCCHHHHHHHHHHHHHhhhCCCeeEEEE-eeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEE
Q 026342 92 RNAFRPHTVKELIRAFNDARDDSSVGVIIL-TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIA 170 (240)
Q Consensus 92 ~Nal~~~~~~~L~~~l~~~~~d~~v~vvVl-tg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA 170 (240)
.-+++++-.....+.++.++.-. +=+|-| -..| +++ |.+-++. ...+ .+...+..+....+|+|+
T Consensus 129 ~G~~~peg~rKa~R~m~lA~~f~-lPIVtlvDTpG--a~~-G~~aE~~---------G~~~-aia~~l~~~a~~~VP~Is 194 (319)
T PRK05724 129 FGMPRPEGYRKALRLMKMAEKFG-LPIITFIDTPG--AYP-GIGAEER---------GQSE-AIARNLREMARLKVPIIC 194 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCC--CCC-CHHHHhc---------cHHH-HHHHHHHHHhCCCCCEEE
Confidence 46788999999999998887654 334433 3333 333 4332210 0011 233456678899999999
Q ss_pred EECchhchhhHHHhhhcCEEEEeCCcEEec
Q 026342 171 MVAGYAVGGGHVLHMVCDLTIAADNAIFGQ 200 (240)
Q Consensus 171 av~G~a~GgG~~lal~~D~rias~~a~f~~ 200 (240)
+|-|.|.|||......||++++.+++.|+.
T Consensus 195 VIiGeg~sGGAla~~~aD~v~m~~~A~~sv 224 (319)
T PRK05724 195 TVIGEGGSGGALAIGVGDRVLMLEYSTYSV 224 (319)
T ss_pred EEeCCccHHHHHHHhccCeeeeecCceEee
Confidence 999999887775555699999999998865
No 125
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=96.45 E-value=0.073 Score=46.95 Aligned_cols=110 Identities=20% Similarity=0.313 Sum_probs=72.2
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHH
Q 026342 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ 160 (240)
Q Consensus 81 v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (240)
|+.+..|..-..-+++....+.+.++++.+.+.. +=+|.|.-.| |+-+.+ ......... .......+
T Consensus 122 V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~~-lPlV~l~dSg------GaRmqE----g~~sL~~~a--k~~~~~~~ 188 (285)
T TIGR00515 122 IVVAVFDFAFMGGSMGSVVGEKFVRAIEKALEDN-CPLIIFSASG------GARMQE----ALLSLMQMA--KTSAALAK 188 (285)
T ss_pred EEEEEEeccccCCCccHHHHHHHHHHHHHHHHcC-CCEEEEEcCC------Cccccc----chhHHHhHH--HHHHHHHH
Confidence 3444444444578899999999999999887653 4566665544 222221 110000111 11222345
Q ss_pred HHcCCCcEEEEECchhchhhHH-HhhhcCEEEEeCCcEEecccc
Q 026342 161 IRRLPKPVIAMVAGYAVGGGHV-LHMVCDLTIAADNAIFGQTGP 203 (240)
Q Consensus 161 i~~~~kP~IAav~G~a~GgG~~-lal~~D~rias~~a~f~~pe~ 203 (240)
+.....|.|+++-|+|.||+.. +++.+|++||.+++.+++...
T Consensus 189 ~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGp 232 (285)
T TIGR00515 189 MSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGP 232 (285)
T ss_pred HHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCH
Confidence 6667899999999999999655 568999999999999888554
No 126
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=96.28 E-value=0.095 Score=46.43 Aligned_cols=114 Identities=17% Similarity=0.288 Sum_probs=73.8
Q ss_pred CCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHH
Q 026342 78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (240)
Q Consensus 78 ~~~v~~Itlnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (240)
++.-..|.-|++. ..-+++....+.+.++++.+.+.. +=+|.|.-.| |+.+.+ ......... ....
T Consensus 119 ~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~~-lPlV~l~dsg------GarmqE----gi~sL~~~a--k~~~ 185 (292)
T PRK05654 119 EGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEEK-CPLVIFSASG------GARMQE----GLLSLMQMA--KTSA 185 (292)
T ss_pred CCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHcC-CCEEEEEcCC------Ccchhh----hhhHHHhHH--HHHH
Confidence 3433444444443 578999999999999999887764 5566666444 322221 110000011 1122
Q ss_pred HHHHHHcCCCcEEEEECchhchhhHH-HhhhcCEEEEeCCcEEeccccc
Q 026342 157 LQVQIRRLPKPVIAMVAGYAVGGGHV-LHMVCDLTIAADNAIFGQTGPK 204 (240)
Q Consensus 157 l~~~i~~~~kP~IAav~G~a~GgG~~-lal~~D~rias~~a~f~~pe~~ 204 (240)
.+.++.....|.|+++-|+|.||+.. +++.+|++||.+++.+++...+
T Consensus 186 a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr 234 (292)
T PRK05654 186 ALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR 234 (292)
T ss_pred HHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH
Confidence 23455667899999999999999755 5778999999999988885543
No 127
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=96.25 E-value=0.031 Score=46.65 Aligned_cols=89 Identities=13% Similarity=0.103 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECc
Q 026342 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG 174 (240)
Q Consensus 95 l~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G 174 (240)
++..+...+.+.|..++..+..+.|+|.=. |.|+++. ....++..|...+.||++.+.|
T Consensus 32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN-----SpGG~v~----------------ag~aI~d~i~~~~~~V~t~v~G 90 (197)
T PRK14512 32 INKDLSELFQEKILLLEALDSKKPIFVYID-----SEGGDID----------------AGFAIFNMIRFVKPKVFTIGVG 90 (197)
T ss_pred EcHHHHHHHHHHHHHHHhcCCCCCEEEEEE-----CCCCCHH----------------HHHHHHHHHHhCCCCEEEEEEe
Confidence 667888888888877776222233333211 2233321 1224566778899999999999
Q ss_pred hhchhhHHHhhhcCE--EEEeCCcEEeccccc
Q 026342 175 YAVGGGHVLHMVCDL--TIAADNAIFGQTGPK 204 (240)
Q Consensus 175 ~a~GgG~~lal~~D~--rias~~a~f~~pe~~ 204 (240)
.|.+.|.-++++||- |++.+++.|.+..+.
T Consensus 91 ~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~ 122 (197)
T PRK14512 91 LVASAAALIFLAAKKESRFSLPNARYLLHQPL 122 (197)
T ss_pred eeHhHHHHHHhcCCcCceeECCCCcEEEEcCc
Confidence 999999999999985 999999988765554
No 128
>PRK10949 protease 4; Provisional
Probab=95.84 E-value=0.039 Score=53.73 Aligned_cols=85 Identities=20% Similarity=0.301 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECchhc
Q 026342 98 HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (240)
Q Consensus 98 ~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~ 177 (240)
-.+.++.++++.+..|+.|++|||.-.++ . |..+. ..+ .+.+.+..+....||+||.-+.++
T Consensus 95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~---g-G~~~a--------~~~-----eI~~ai~~fk~sGKpVvA~~~~~~- 156 (618)
T PRK10949 95 NSLFDIVNTIRQAKDDRNITGIVLDLKNF---A-GADQP--------SMQ-----YIGKALREFRDSGKPVYAVGDSYS- 156 (618)
T ss_pred ccHHHHHHHHHHHhcCCCceEEEEEeCCC---C-CccHH--------HHH-----HHHHHHHHHHHhCCeEEEEecCcc-
Confidence 45678999999999999999999998652 1 22111 000 122334455667899999755554
Q ss_pred hhhHHHhhhcCEEEEeCCcEEec
Q 026342 178 GGGHVLHMVCDLTIAADNAIFGQ 200 (240)
Q Consensus 178 GgG~~lal~~D~rias~~a~f~~ 200 (240)
-++.-||.+||-+++.+.+.+++
T Consensus 157 s~~YyLASaAD~I~l~P~G~v~~ 179 (618)
T PRK10949 157 QGQYYLASFANKIYLSPQGVVDL 179 (618)
T ss_pred chhhhhhhhCCEEEECCCceEEE
Confidence 56899999999999998877765
No 129
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=95.72 E-value=0.23 Score=48.01 Aligned_cols=111 Identities=23% Similarity=0.343 Sum_probs=69.1
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHH
Q 026342 82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQI 161 (240)
Q Consensus 82 ~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i 161 (240)
+.+-.|..=+..+++....+.+.++++.+.+.. +-+|.|.-.| |+.+.+ ............+ ...-..++
T Consensus 132 ~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~-lPlV~l~DSg------Garl~~-q~e~~~~~~~~g~--if~~~~~l 201 (569)
T PLN02820 132 MFVANDPTVKGGTYYPITVKKHLRAQEIAAQCR-LPCIYLVDSG------GANLPR-QAEVFPDRDHFGR--IFYNQARM 201 (569)
T ss_pred EEEEECCCccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCC------CcCCcc-cccccchHhHHHH--HHHHHHHH
Confidence 334334333578999999999999999887764 3455554333 333321 0000000001111 11112335
Q ss_pred HcCCCcEEEEECchhchhhHHHhhhcCEEEEeCC-cEEeccc
Q 026342 162 RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTG 202 (240)
Q Consensus 162 ~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~-a~f~~pe 202 (240)
....+|.|++|-|.|.|||..+..+||++|++++ +.+++..
T Consensus 202 s~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~aG 243 (569)
T PLN02820 202 SSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFLAG 243 (569)
T ss_pred hCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEecC
Confidence 5567999999999999999999999999999975 6666643
No 130
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=95.53 E-value=0.22 Score=47.52 Aligned_cols=108 Identities=16% Similarity=0.198 Sum_probs=66.9
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHH
Q 026342 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ 160 (240)
Q Consensus 81 v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (240)
|+.+-.+..=+.-++.....+.+.++++.+.++.- -+|.|.-.| |+.+.+- ......+.+. +.. ..
T Consensus 84 v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~l-PlV~l~dSg------Garm~eg----~~~l~~~~~~-~~~--~~ 149 (512)
T TIGR01117 84 VYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMGA-PVVGLNDSG------GARIQEA----VDALKGYGDI-FYR--NT 149 (512)
T ss_pred EEEEEECCcccccCCCHHHHHHHHHHHHHHHHcCC-CEEEEecCC------CCCcccc----chhhhhHHHH-HHH--HH
Confidence 34444443335778999999999999998877654 344444322 3333221 0000011110 111 12
Q ss_pred HHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCC-cEEeccc
Q 026342 161 IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTG 202 (240)
Q Consensus 161 i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~-a~f~~pe 202 (240)
..+-..|.|+++-|+|.||+......||++|+.++ +.+++..
T Consensus 150 ~~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~aG 192 (512)
T TIGR01117 150 IASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFITG 192 (512)
T ss_pred HHcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEecC
Confidence 23345899999999999999888889999999987 4566643
No 131
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=95.48 E-value=0.18 Score=42.26 Aligned_cols=89 Identities=12% Similarity=0.085 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHHHHHhhhCCCeeEE--EEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 026342 95 FRPHTVKELIRAFNDARDDSSVGVI--ILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172 (240)
Q Consensus 95 l~~~~~~~L~~~l~~~~~d~~v~vv--Vltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav 172 (240)
+|.++..++...|-.++.++..+-| .|.+.| +|+.. ...++..|...+.||...+
T Consensus 39 i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpG-------G~v~~----------------g~aIyd~m~~~~~~V~Tv~ 95 (200)
T CHL00028 39 VDDEIANQLIGLMVYLSIEDDTKDLYLFINSPG-------GSVIS----------------GLAIYDTMQFVKPDVHTIC 95 (200)
T ss_pred ecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCC-------cchhh----------------HHHHHHHHHhcCCCEEEEE
Confidence 8889999999998888754333333 334433 33211 1235667888899999999
Q ss_pred CchhchhhHHHhhhcC--EEEEeCCcEEeccccccc
Q 026342 173 AGYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVG 206 (240)
Q Consensus 173 ~G~a~GgG~~lal~~D--~rias~~a~f~~pe~~~G 206 (240)
.|.|.+.|.-|++++| -|++.++++|.+..+..|
T Consensus 96 ~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~ 131 (200)
T CHL00028 96 LGLAASMASFILAGGEITKRLAFPHARVMIHQPASS 131 (200)
T ss_pred EEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccC
Confidence 9999999999999999 699999999988777655
No 132
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=95.48 E-value=0.27 Score=47.00 Aligned_cols=106 Identities=15% Similarity=0.180 Sum_probs=69.9
Q ss_pred EEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHH
Q 026342 82 AKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ 160 (240)
Q Consensus 82 ~~Itlnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (240)
.-|.=|+|. ..-+++++..+...+.++.+.+. ++=+|.|.-.+ .|..|.+-+ .....+ ...+++.+
T Consensus 317 V~vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~--G~~~g~~~E---------~~g~~~-~~a~~~~a 383 (512)
T TIGR01117 317 VGIIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVP--GFLPGVNQE---------YGGIIR-HGAKVLYA 383 (512)
T ss_pred EEEEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCc--CccccHHHH---------HHHHHH-HHHHHHHH
Confidence 333344443 35679999999999999988765 34555555443 255443311 011111 23456778
Q ss_pred HHcCCCcEEEEECchhchhhHHHhh----hcCEEEEeCCcEEec
Q 026342 161 IRRLPKPVIAMVAGYAVGGGHVLHM----VCDLTIAADNAIFGQ 200 (240)
Q Consensus 161 i~~~~kP~IAav~G~a~GgG~~lal----~~D~rias~~a~f~~ 200 (240)
+.+..+|.|+.|-|.+.|||+.-+. .+|+++|.+++.++.
T Consensus 384 ~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v 427 (512)
T TIGR01117 384 YSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAV 427 (512)
T ss_pred HHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEee
Confidence 8889999999999999888654333 289999988888765
No 133
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=95.25 E-value=0.14 Score=42.50 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECc
Q 026342 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG 174 (240)
Q Consensus 95 l~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G 174 (240)
++..+..++...|..++.++..+-|+|.=. |.|+|+. ....++..|...+.|+...+.|
T Consensus 35 I~~~~~~~ii~~L~~l~~~~~~~~i~l~In-----SpGG~v~----------------~g~~I~d~l~~~~~~v~t~~~G 93 (191)
T TIGR00493 35 VNDSVANLIVAQLLFLEAEDPEKDIYLYIN-----SPGGSIT----------------AGLAIYDTMQFIKPDVSTICIG 93 (191)
T ss_pred EChHHHHHHHHHHHHhhccCCCCCEEEEEE-----CCCCCHH----------------HHHHHHHHHHhcCCCEEEEEEE
Confidence 667778888888888876554343333221 2244431 1123455677777788888889
Q ss_pred hhchhhHHHhhhcC--EEEEeCCcEEeccccccc
Q 026342 175 YAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVG 206 (240)
Q Consensus 175 ~a~GgG~~lal~~D--~rias~~a~f~~pe~~~G 206 (240)
.|.+.|.-+++++| .|++.+++.|.+.++..|
T Consensus 94 ~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~ 127 (191)
T TIGR00493 94 QAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGG 127 (191)
T ss_pred eeccHHHHHHhcCCCCcEEecCCceEEEecCccc
Confidence 99999999998766 599999999988776544
No 134
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.2 Score=46.51 Aligned_cols=101 Identities=22% Similarity=0.305 Sum_probs=74.8
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHH
Q 026342 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (240)
Q Consensus 78 ~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l 157 (240)
+..|..+.++ +++++.+.+.+.+.++.++++.. .++||.=.-|. |.+ ....++
T Consensus 25 ~~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTPG----Gl~-----------------~sm~~i 77 (436)
T COG1030 25 EKKVYVIEID-----GAIDPASADYLQRALQSAEEENA-AAVVLELDTPG----GLL-----------------DSMRQI 77 (436)
T ss_pred CCeEEEEEec-----CccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCCC----chH-----------------HHHHHH
Confidence 4567778885 56999999999999999988763 34444322110 110 024467
Q ss_pred HHHHHcCCCcEEEEEC---chhchhhHHHhhhcCEEEEeCCcEEecccccc
Q 026342 158 QVQIRRLPKPVIAMVA---GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV 205 (240)
Q Consensus 158 ~~~i~~~~kP~IAav~---G~a~GgG~~lal~~D~rias~~a~f~~pe~~~ 205 (240)
.++|.+.+.|++..+. +.|.-+|.-++++||+..|++.+.++-..+-.
T Consensus 78 v~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~ 128 (436)
T COG1030 78 VRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIA 128 (436)
T ss_pred HHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceec
Confidence 8899999999888883 46999999999999999999999988755443
No 135
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=94.88 E-value=0.035 Score=44.31 Aligned_cols=44 Identities=30% Similarity=0.418 Sum_probs=32.9
Q ss_pred HcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccc
Q 026342 162 RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV 205 (240)
Q Consensus 162 ~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~ 205 (240)
.+..|||||.++|.+..+|.-|+.+||-+++.+.+.++...+..
T Consensus 3 ~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~ 46 (154)
T PF01343_consen 3 KASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSA 46 (154)
T ss_dssp HHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEE
T ss_pred cccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhh
Confidence 46789999999999999999999999999999998887754443
No 136
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=94.77 E-value=0.13 Score=48.90 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=67.6
Q ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHc
Q 026342 84 ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRR 163 (240)
Q Consensus 84 Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 163 (240)
..-+.+.+.-++.+-..+.+.++.+.+.++..-.+.+..+. |+.+.+- ......+.+ ...-..++..
T Consensus 96 ~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsg-------Gari~~~----v~~l~g~g~--iF~~~a~~Sg 162 (526)
T COG4799 96 FANDFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSG-------GARIQEG----VPSLAGYGR--IFYRNARASG 162 (526)
T ss_pred EEecCceecccccccccchHHHHHHHHHHcCCCEEEEEccc-------ccccccC----ccccccchH--HHHHHHHhcc
Confidence 33344556888888888888999888887765555555544 4444321 111111111 1111223444
Q ss_pred CCCcEEEEECchhchhhHHHhhhcCEEEEeCC-cEEec
Q 026342 164 LPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQ 200 (240)
Q Consensus 164 ~~kP~IAav~G~a~GgG~~lal~~D~rias~~-a~f~~ 200 (240)
. +|.|++|-|.|.|||.-+-..||++|+.++ +++.+
T Consensus 163 ~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~~~mfl 199 (526)
T COG4799 163 V-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQSYMFL 199 (526)
T ss_pred C-CCEEEEEEecCcccccccccccceEEEEcCCccEEe
Confidence 4 999999999999999999999999999988 54444
No 137
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=94.32 E-value=0.33 Score=40.47 Aligned_cols=89 Identities=12% Similarity=0.110 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHHhhhCCCeeEE--EEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 026342 95 FRPHTVKELIRAFNDARDDSSVGVI--ILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172 (240)
Q Consensus 95 l~~~~~~~L~~~l~~~~~d~~v~vv--Vltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav 172 (240)
++.+...++...|..++.++..+-| .|-+. |+|+.. ...++..|...+.||...+
T Consensus 34 i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSp-------GG~v~~----------------g~aIyd~m~~~~~~V~t~~ 90 (196)
T PRK12551 34 VTSDSANRIVAQLLFLEAEDPEKDIYLYINSP-------GGSVYD----------------GLGIFDTMQHVKPDVHTVC 90 (196)
T ss_pred ecHHHHHHHHHHHHHhhccCCCCCEEEEEeCC-------Ccchhh----------------HHHHHHHHHhcCCCEEEEE
Confidence 8889999999999888754322322 23333 333321 1234667788889999999
Q ss_pred CchhchhhHHHhhhcCE--EEEeCCcEEeccccccc
Q 026342 173 AGYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVG 206 (240)
Q Consensus 173 ~G~a~GgG~~lal~~D~--rias~~a~f~~pe~~~G 206 (240)
.|.|.+.|.-|++++|. |++.++++|.+..+..|
T Consensus 91 ~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~ 126 (196)
T PRK12551 91 VGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGG 126 (196)
T ss_pred EEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcc
Confidence 99999999999999985 88999999887766543
No 138
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=93.77 E-value=0.53 Score=40.04 Aligned_cols=88 Identities=14% Similarity=0.129 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHHHhhh---CCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 026342 95 FRPHTVKELIRAFNDARD---DSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171 (240)
Q Consensus 95 l~~~~~~~L~~~l~~~~~---d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAa 171 (240)
+|..+...+...|..++. +..+.+. |-+.| +++.. ...++..|...+.||...
T Consensus 63 Idd~~a~~i~aqLl~L~~~~~~~~I~ly-INSpG-------Gsv~a----------------GlaIyd~m~~~~~~V~tv 118 (221)
T PRK14514 63 IDDYTANTIQAQLLYLDSVDPGKDISIY-INSPG-------GSVYA----------------GLGIYDTMQFISSDVATI 118 (221)
T ss_pred EcHHHHHHHHHHHHHHhccCCCCCEEEE-EECCC-------cchhh----------------HHHHHHHHHhcCCCEEEE
Confidence 777888888887666654 3334333 34443 33211 123456778889999999
Q ss_pred ECchhchhhHHHhhhcCE--EEEeCCcEEeccccccc
Q 026342 172 VAGYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVG 206 (240)
Q Consensus 172 v~G~a~GgG~~lal~~D~--rias~~a~f~~pe~~~G 206 (240)
+.|.|.+.|.-|++++|. |++.+++.|.+..+..|
T Consensus 119 ~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~ 155 (221)
T PRK14514 119 CTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGG 155 (221)
T ss_pred EEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcc
Confidence 999999999999999996 99999999988776544
No 139
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=93.70 E-value=0.56 Score=39.31 Aligned_cols=89 Identities=18% Similarity=0.249 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHHHHhhhCC---CeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEE
Q 026342 94 AFRPHTVKELIRAFNDARDDS---SVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIA 170 (240)
Q Consensus 94 al~~~~~~~L~~~l~~~~~d~---~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA 170 (240)
.++.++...+...|-.++.++ .+.+. |.+.| +|+.. ...++..|...+-||..
T Consensus 35 ~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~-INSpG-------G~v~~----------------GlaIyd~m~~~~~~V~T 90 (201)
T PRK14513 35 PIESQMANTIVAQLLLLDSQNPEQEIQMY-INCPG-------GEVYA----------------GLAIYDTMRYIKAPVST 90 (201)
T ss_pred EEcHHHHHHHHHHHHHhhccCCCCCEEEE-EECCC-------Cchhh----------------HHHHHHHHHhcCCCEEE
Confidence 378888888888777776533 34333 34433 33211 12456678888999999
Q ss_pred EECchhchhhHHHhhhcCE--EEEeCCcEEeccccccc
Q 026342 171 MVAGYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVG 206 (240)
Q Consensus 171 av~G~a~GgG~~lal~~D~--rias~~a~f~~pe~~~G 206 (240)
.+.|.|.+.|.-|++++|- |++.++++|-+..+..|
T Consensus 91 i~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~ 128 (201)
T PRK14513 91 ICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAG 128 (201)
T ss_pred EEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCC
Confidence 9999999999999999996 99999999988777655
No 140
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=93.51 E-value=0.98 Score=39.46 Aligned_cols=112 Identities=17% Similarity=0.275 Sum_probs=77.0
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHH
Q 026342 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ 160 (240)
Q Consensus 81 v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (240)
++...++-.=-.-.|..-.=+.+.++++.+-++. +.+|+++..| |+-.++- . ....+-......+.+
T Consensus 124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~k-~P~v~f~aSG------GARMQEg----~--lSLMQMaktsaAl~~ 190 (294)
T COG0777 124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIEDK-LPLVLFSASG------GARMQEG----I--LSLMQMAKTSAALKR 190 (294)
T ss_pred EEEEEEeccccccchhHHHHHHHHHHHHHHHHhC-CCEEEEecCc------chhHhHH----H--HHHHHHHHHHHHHHH
Confidence 4555555443456788888888999999887664 6788888877 3332220 0 000011112233456
Q ss_pred HHcCCCcEEEEECchhchhh-HHHhhhcCEEEEeCCcEEecccccc
Q 026342 161 IRRLPKPVIAMVAGYAVGGG-HVLHMVCDLTIAADNAIFGQTGPKV 205 (240)
Q Consensus 161 i~~~~kP~IAav~G~a~GgG-~~lal~~D~rias~~a~f~~pe~~~ 205 (240)
+.+...|.|+.+..+..||= ..+++..|+.||.++|.+||...++
T Consensus 191 l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRV 236 (294)
T COG0777 191 LSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRV 236 (294)
T ss_pred HHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchh
Confidence 77889999999999999884 6699999999999999999976553
No 141
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=93.10 E-value=2.5 Score=36.37 Aligned_cols=108 Identities=19% Similarity=0.225 Sum_probs=63.5
Q ss_pred CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHh-hhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHH
Q 026342 79 EGIAKITINRPDRRNAFRPHTVKELIRAFNDA-RDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (240)
Q Consensus 79 ~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~-~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l 157 (240)
+.-..|.=|+|.. .|+.+-...+.+.+..+ +++.++=+|.|.=.. .|-.|.+-++.. ......++
T Consensus 31 G~~V~vIa~~~~~--~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtp--G~~~g~~aE~~G----------~~~a~A~l 96 (238)
T TIGR03134 31 GGKVTVIGVVPDA--EVGLDEALALAQAVLDVIEADDKRPIVVLVDTP--SQAYGRREELLG----------INQALAHL 96 (238)
T ss_pred CEEEEEEEECCCC--cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCC--CCCCCHHHHHHH----------HHHHHHHH
Confidence 3334444455542 78878888888888775 455555555554332 233333221110 11123333
Q ss_pred HHHHH---cCCCcEEEEECchhchhhHH-HhhhcCEEEEeCCcEEec
Q 026342 158 QVQIR---RLPKPVIAMVAGYAVGGGHV-LHMVCDLTIAADNAIFGQ 200 (240)
Q Consensus 158 ~~~i~---~~~kP~IAav~G~a~GgG~~-lal~~D~rias~~a~f~~ 200 (240)
+..+. ..+.|+|+.|-|.++|||+. +.+.+|.++|-+++.++.
T Consensus 97 ~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~v 143 (238)
T TIGR03134 97 AKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMVHV 143 (238)
T ss_pred HHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEEEe
Confidence 44444 55699999999999988765 444588888877776654
No 142
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=89.62 E-value=2.5 Score=40.21 Aligned_cols=110 Identities=19% Similarity=0.219 Sum_probs=67.2
Q ss_pred CCCEEEEEEcCCCC-CCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHH
Q 026342 78 GEGIAKITINRPDR-RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (240)
Q Consensus 78 ~~~v~~Itlnrp~~-~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (240)
++.-.-|.=|+|.. .-+++.+-.....+.++.++.. ++=+|.|.-. ..|-.|-+-+. ....+ ...+
T Consensus 292 ~G~pVGiian~~~~~~G~~~~~~a~K~arfi~lcd~~-~iPlv~l~dt--pGf~~g~~~E~---------~g~~~-~ga~ 358 (493)
T PF01039_consen 292 GGRPVGIIANNPRQRAGALDPDGARKAARFIRLCDAF-NIPLVTLVDT--PGFMPGPEAER---------AGIIR-AGAR 358 (493)
T ss_dssp TTEEEEEEEE-TTCGGGEB-HHHHHHHHHHHHHHHHT-T--EEEEEEE--CEB--SHHHHH---------TTHHH-HHHH
T ss_pred CCcceEEEEeccccccccCChHHHHHHHHHHHHHHhh-CCceEEEeec--ccccccchhhh---------cchHH-HHHH
Confidence 34334444566642 2269999999999999999874 4566666543 23544432211 11111 3456
Q ss_pred HHHHHHcCCCcEEEEECchhchhhHHHhhhc----CEEEEeCCcEEec
Q 026342 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC----DLTIAADNAIFGQ 200 (240)
Q Consensus 157 l~~~i~~~~kP~IAav~G~a~GgG~~lal~~----D~rias~~a~f~~ 200 (240)
++.++.++..|.|..|-|.+.|+|....... |+++|.++++++.
T Consensus 359 ~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~v 406 (493)
T PF01039_consen 359 LLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIGV 406 (493)
T ss_dssp HHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEES
T ss_pred HHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceeee
Confidence 7889999999999999999999887555555 7888777777764
No 143
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=86.99 E-value=2 Score=37.80 Aligned_cols=52 Identities=23% Similarity=0.342 Sum_probs=35.2
Q ss_pred HHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECchhc
Q 026342 104 IRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (240)
Q Consensus 104 ~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~ 177 (240)
.++|+.+++||+.++||+-|.-+ .+-+ + ...++..+ ....||+||.+-|.+-
T Consensus 189 id~L~~fe~Dp~T~~ivmiGEiG------G~aE-----------e----~AA~~i~~-~~~~KPVVa~iaG~ta 240 (293)
T COG0074 189 IDALEMFEADPETEAIVMIGEIG------GPAE-----------E----EAAEYIKA-NATRKPVVAYIAGRTA 240 (293)
T ss_pred HHHHHHHhcCccccEEEEEecCC------CcHH-----------H----HHHHHHHH-hccCCCEEEEEeccCC
Confidence 47888999999999999999731 1100 0 11233444 4455999999999865
No 144
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=86.49 E-value=6.6 Score=38.09 Aligned_cols=95 Identities=12% Similarity=0.153 Sum_probs=64.1
Q ss_pred CCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 026342 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172 (240)
Q Consensus 93 Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav 172 (240)
-+++.+-.....+.++.+++- ++=+|.|.=.. .|-.|.+-+. ....+ ....++.++....+|.|++|
T Consensus 380 g~l~~~~a~Kaarfi~lc~~~-~iPlv~l~D~p--Gf~~G~~~E~---------~G~~~-~~a~l~~A~a~~~VP~isvi 446 (569)
T PLN02820 380 GILFTESALKGAHFIELCAQR-GIPLLFLQNIT--GFMVGSRSEA---------SGIAK-AGAKMVMAVACAKVPKITII 446 (569)
T ss_pred CccCHHHHHHHHHHHHHHHhc-CCCEEEEEECC--CCCCCHHHHH---------hhHHH-HHHHHHHHHHhCCCCEEEEE
Confidence 458888899988888888754 45556555432 3666654332 11111 34567788899999999999
Q ss_pred CchhchhhHHHhh----hcCEEEEeCCcEEec
Q 026342 173 AGYAVGGGHVLHM----VCDLTIAADNAIFGQ 200 (240)
Q Consensus 173 ~G~a~GgG~~lal----~~D~rias~~a~f~~ 200 (240)
-|.++|+|..-++ ..|++++.+++.++.
T Consensus 447 ~g~a~G~g~~aM~g~~~~~d~~~awp~A~i~v 478 (569)
T PLN02820 447 VGGSFGAGNYGMCGRAYSPNFLFMWPNARIGV 478 (569)
T ss_pred ECCcchHHHHHhcCcCCCCCEEEECCCCeEEe
Confidence 9999998765443 567777776666653
No 145
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=84.34 E-value=9.5 Score=31.92 Aligned_cols=49 Identities=27% Similarity=0.269 Sum_probs=42.2
Q ss_pred HHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEE--EEeCCcEEeccccc
Q 026342 156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT--IAADNAIFGQTGPK 204 (240)
Q Consensus 156 ~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~r--ias~~a~f~~pe~~ 204 (240)
.++..+...++||...+.|.|...|.-|++++|.. ++.+++++-...+.
T Consensus 76 AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~ 126 (200)
T COG0740 76 AIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS 126 (200)
T ss_pred HHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC
Confidence 35667889999999999999999999999999986 88888888765555
No 146
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=81.12 E-value=4.5 Score=35.93 Aligned_cols=76 Identities=24% Similarity=0.359 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhhhCC---CeeEEEE-eeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEEC
Q 026342 98 HTVKELIRAFNDARDDS---SVGVIIL-TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173 (240)
Q Consensus 98 ~~~~~L~~~l~~~~~d~---~v~vvVl-tg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~ 173 (240)
....++.++++.+.... .+-+||| +|.|. + -||..| +-..+.++|+.++.|||++|
T Consensus 55 ~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs--~---eDL~~F--------------N~e~varai~~~~~PvisaI- 114 (319)
T PF02601_consen 55 GAAASIVSALRKANEMGQADDFDVIIIIRGGGS--I---EDLWAF--------------NDEEVARAIAASPIPVISAI- 114 (319)
T ss_pred chHHHHHHHHHHHHhccccccccEEEEecCCCC--h---HHhccc--------------ChHHHHHHHHhCCCCEEEec-
Confidence 45677788888887654 4555555 55441 1 122222 12356789999999999987
Q ss_pred chhchhhHHHh-hhcCEEEEeCC
Q 026342 174 GYAVGGGHVLH-MVCDLTIAADN 195 (240)
Q Consensus 174 G~a~GgG~~la-l~~D~rias~~ 195 (240)
||-.= +.|+ +.||+|..|+.
T Consensus 115 GHe~D--~ti~D~vAd~ra~TPt 135 (319)
T PF02601_consen 115 GHETD--FTIADFVADLRAPTPT 135 (319)
T ss_pred CCCCC--chHHHHHHHhhCCCHH
Confidence 33322 2333 77888887766
No 147
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=80.61 E-value=21 Score=30.39 Aligned_cols=98 Identities=14% Similarity=0.207 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHHHHHhhhCC---CeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEE
Q 026342 94 AFRPHTVKELIRAFNDARDDS---SVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIA 170 (240)
Q Consensus 94 al~~~~~~~L~~~l~~~~~d~---~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA 170 (240)
..+.++.+.+...|-.++.++ .+. +-|-+.|+..| +|-=+... . ....++..+...+-+|..
T Consensus 48 ~~~~~~a~~iiaqLl~L~~~~~~k~I~-lyINSpGGsv~-~G~~iG~v----~---------~glaIyD~m~~ik~~V~T 112 (222)
T PRK12552 48 QVGMDVTELIIAQLLYLEFDDPEKPIY-FYINSTGTSWY-TGDAIGFE----T---------EAFAICDTMRYIKPPVHT 112 (222)
T ss_pred chhHhHHHHHHHHHHHHhccCCCCCEE-EEEeCCCCCcc-cccccccc----c---------cHHHHHHHHHhcCCCeEE
Confidence 344557777777776665433 343 44455553223 33000000 0 122456677788889999
Q ss_pred EECchhchhhHHHhhhcCE--EEEeCCcEEeccccccc
Q 026342 171 MVAGYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVG 206 (240)
Q Consensus 171 av~G~a~GgG~~lal~~D~--rias~~a~f~~pe~~~G 206 (240)
.+.|.|.+.+.-|++++|- |++.++++|-+..+..|
T Consensus 113 v~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~ 150 (222)
T PRK12552 113 ICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSG 150 (222)
T ss_pred EEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcc
Confidence 9999999999999999996 99999999988776655
No 148
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=79.64 E-value=0.86 Score=40.17 Aligned_cols=55 Identities=24% Similarity=0.353 Sum_probs=44.1
Q ss_pred HHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHH
Q 026342 158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMS 218 (240)
Q Consensus 158 ~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~ 218 (240)
...+.++++|+||.|=|---+||.-=...+|.+++-++++|+. +.|.++++.+|-
T Consensus 181 L~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWk 235 (317)
T COG0825 181 LREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWK 235 (317)
T ss_pred HHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhc
Confidence 4567899999999999987777776667789999999999986 557776665553
No 149
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=78.52 E-value=5.5 Score=37.27 Aligned_cols=83 Identities=20% Similarity=0.255 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhhhCCCeeEEEE-eeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECch
Q 026342 97 PHTVKELIRAFNDARDDSSVGVIIL-TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGY 175 (240)
Q Consensus 97 ~~~~~~L~~~l~~~~~d~~v~vvVl-tg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~ 175 (240)
.....++.++++.++..+++-+||| +|.| .+ -||..| +-..+.++|+.|+.|||++| ||
T Consensus 169 ~~a~~~i~~al~~~~~~~~~dviii~RGGG--s~---eDL~~F--------------n~e~~~rai~~~~~Pvis~i-GH 228 (432)
T TIGR00237 169 EGAVQSIVESIELANTKNECDVLIVGRGGG--SL---EDLWSF--------------NDEKVARAIFLSKIPIISAV-GH 228 (432)
T ss_pred ccHHHHHHHHHHHhhcCCCCCEEEEecCCC--CH---HHhhhc--------------CcHHHHHHHHcCCCCEEEec-Cc
Confidence 3456777788877776555556555 4433 11 122221 12356789999999999987 33
Q ss_pred hchhhHHHh-hhcCEEEEeCC--cEEecc
Q 026342 176 AVGGGHVLH-MVCDLTIAADN--AIFGQT 201 (240)
Q Consensus 176 a~GgG~~la-l~~D~rias~~--a~f~~p 201 (240)
-.= +.|+ +.+|.|..|+. |.+..|
T Consensus 229 e~D--~ti~D~vAd~ra~TPtaaae~~~p 255 (432)
T TIGR00237 229 ETD--FTISDFVADLRAPTPSAAAEIVSP 255 (432)
T ss_pred CCC--ccHHHHhhhccCCCcHHHHHHhCc
Confidence 221 2333 78888888876 444444
No 150
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=73.81 E-value=10 Score=29.68 Aligned_cols=52 Identities=25% Similarity=0.360 Sum_probs=28.3
Q ss_pred HHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECchh
Q 026342 102 ELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYA 176 (240)
Q Consensus 102 ~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a 176 (240)
.+.+.++.+.+||++++|++.-++- . +.. .+.+..++.... ||+|+..-|..
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~~------------~-----d~~-----~f~~~~~~a~~~-KPVv~lk~Grt 92 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEGI------------G-----DGR-----RFLEAARRAARR-KPVVVLKAGRT 92 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES--------------S------HH-----HHHHHHHHHCCC-S-EEEEE----
T ss_pred CHHHHHHHHhcCCCCCEEEEEccCC------------C-----CHH-----HHHHHHHHHhcC-CCEEEEeCCCc
Confidence 3567788888999999999988761 0 111 233445555555 99999999973
No 151
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=71.71 E-value=10 Score=35.54 Aligned_cols=83 Identities=27% Similarity=0.324 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECchhc
Q 026342 98 HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (240)
Q Consensus 98 ~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~ 177 (240)
....++.++++.+++.+++.++|+-=.| +-++ +...| +-..+.++++.+++|+|++| ||-.
T Consensus 176 ~A~~eIv~aI~~an~~~~~DvlIVaRGG-------GSiE--------DLW~F---NdE~vaRAi~~s~iPvISAV-GHEt 236 (440)
T COG1570 176 GAAEEIVEAIERANQRGDVDVLIVARGG-------GSIE--------DLWAF---NDEIVARAIAASRIPVISAV-GHET 236 (440)
T ss_pred CcHHHHHHHHHHhhccCCCCEEEEecCc-------chHH--------HHhcc---ChHHHHHHHHhCCCCeEeec-ccCC
Confidence 3566777777777777777766653222 1121 11111 12346789999999999998 3321
Q ss_pred hhhHHHh-hhcCEEEEeCC--cEEecc
Q 026342 178 GGGHVLH-MVCDLTIAADN--AIFGQT 201 (240)
Q Consensus 178 GgG~~la-l~~D~rias~~--a~f~~p 201 (240)
=+.|+ +.+|+|-.|+. |.+..|
T Consensus 237 --D~tL~DfVAD~RApTPTaAAE~~vP 261 (440)
T COG1570 237 --DFTLADFVADLRAPTPTAAAELVVP 261 (440)
T ss_pred --CccHHHhhhhccCCCchHHHHHhCC
Confidence 13344 67788877765 344443
No 152
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=71.65 E-value=11 Score=33.84 Aligned_cols=53 Identities=23% Similarity=0.374 Sum_probs=35.1
Q ss_pred HHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECchhc
Q 026342 103 LIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (240)
Q Consensus 103 L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~ 177 (240)
+.+.|+.+++||+.++|++-+++. .+-+ .+ .+ +++.. ....||+|+.+-|..-
T Consensus 212 ~~D~L~~~~~Dp~T~~Ivl~~E~g------G~~e-------~~----aa----~fi~~-~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 212 FIDCLKLFLNDPETEGIILIGEIG------GTAE-------EE----AA----EWIKN-NPIKKPVVSFIAGITA 264 (317)
T ss_pred HHHHHHHHhhCCCccEEEEEEecC------Cchh-------HH----HH----HHHHh-hcCCCcEEEEEecCCC
Confidence 467788888999999999999851 1100 01 11 12222 3468999999999874
No 153
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=68.00 E-value=13 Score=34.71 Aligned_cols=75 Identities=23% Similarity=0.290 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhhhCCCeeEEEE-eeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECchh
Q 026342 98 HTVKELIRAFNDARDDSSVGVIIL-TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYA 176 (240)
Q Consensus 98 ~~~~~L~~~l~~~~~d~~v~vvVl-tg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a 176 (240)
....++.++++.++... +-+||| +|.|. + -||..| +-..+.++|++|+.|||++| ||-
T Consensus 176 ~A~~~i~~al~~~~~~~-~Dviii~RGGGS--~---eDL~~F--------------n~e~v~~ai~~~~~Pvis~I-GHE 234 (438)
T PRK00286 176 GAAASIVAAIERANARG-EDVLIVARGGGS--L---EDLWAF--------------NDEAVARAIAASRIPVISAV-GHE 234 (438)
T ss_pred cHHHHHHHHHHHhcCCC-CCEEEEecCCCC--H---HHhhcc--------------CcHHHHHHHHcCCCCEEEec-cCC
Confidence 45677777777776533 344444 54431 1 122222 12356789999999999987 332
Q ss_pred chhhHHHh-hhcCEEEEeCC
Q 026342 177 VGGGHVLH-MVCDLTIAADN 195 (240)
Q Consensus 177 ~GgG~~la-l~~D~rias~~ 195 (240)
.= +.|+ +.||.|..|+.
T Consensus 235 ~D--~tl~D~vAd~ra~TPt 252 (438)
T PRK00286 235 TD--FTIADFVADLRAPTPT 252 (438)
T ss_pred CC--ccHHHHhhhccCCChH
Confidence 11 2233 77888888876
No 154
>PLN02522 ATP citrate (pro-S)-lyase
Probab=65.51 E-value=17 Score=35.63 Aligned_cols=52 Identities=23% Similarity=0.344 Sum_probs=35.5
Q ss_pred HHHHHHHhhhCCCeeEEEEeeC-CCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECchhc
Q 026342 103 LIRAFNDARDDSSVGVIILTGK-GTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (240)
Q Consensus 103 L~~~l~~~~~d~~v~vvVltg~-g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~ 177 (240)
+.+.|+.+++||++++|++-++ |.+ +.. .+.+...+.. ..||||+.+-|.+-
T Consensus 210 ~~D~L~~~~~Dp~Tk~IvlygEiGg~-----------------~e~-----~f~ea~~~a~-~~KPVVa~kaGrsa 262 (608)
T PLN02522 210 LSDHVLRFNNIPQIKMIVVLGELGGR-----------------DEY-----SLVEALKQGK-VSKPVVAWVSGTCA 262 (608)
T ss_pred HHHHHHHHhcCCCCCEEEEEEecCch-----------------hHH-----HHHHHHHHhc-CCCCEEEEeccCCC
Confidence 3567778889999999999998 621 111 1222222322 78999999999976
No 155
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=63.08 E-value=10 Score=35.16 Aligned_cols=98 Identities=16% Similarity=0.162 Sum_probs=56.5
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEE--eeCCCCCcccCCCccccccC-Cc--cchhhhhhhhHH
Q 026342 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL--TGKGTEAFCSGGDQALRTRD-GY--ADYENFGRLNVL 155 (240)
Q Consensus 81 v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVl--tg~g~~~FcaG~Dl~~~~~~-~~--~~~~~~~~~~~~ 155 (240)
|++|+| +.|+....++|..++++++++. ++.+|| ++.++.......++..+.-. .. ............
T Consensus 205 IGyI~I------~~F~~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~ 277 (406)
T COG0793 205 IGYIRI------PSFGEGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVY 277 (406)
T ss_pred EEEEEe------cccccchHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceeec
Confidence 888887 4588888888999999999887 788887 56554455555554422111 00 000001100000
Q ss_pred HHHHHHHcCCCcEEEEECchhchhhHHHhh
Q 026342 156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185 (240)
Q Consensus 156 ~l~~~i~~~~kP~IAav~G~a~GgG~~lal 185 (240)
.-...-...++|+|..||+...-++=.++.
T Consensus 278 ~~~~~~~~~~~PlvvLvn~~SASAsEI~ag 307 (406)
T COG0793 278 FSASGEALYDGPLVVLVNEGSASASEIFAG 307 (406)
T ss_pred cccccccCCCCCEEEEECCCCccHHHHHHH
Confidence 000000145799999999998777644443
No 156
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=59.40 E-value=56 Score=28.88 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=69.9
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCcccc---------ccCCccchhhhhhh
Q 026342 82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR---------TRDGYADYENFGRL 152 (240)
Q Consensus 82 ~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~---------~~~~~~~~~~~~~~ 152 (240)
=++.||-. .|-++.+.+..+.+++.+.--.+.-++-||-|...+.|.=--|.... .+.+..-.-.+.+.
T Consensus 130 Nilpi~Gs--~h~Vt~~~lAa~~e~~~~~~p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRR 207 (329)
T COG3660 130 NILPINGS--PHNVTSQRLAALREAFKHLLPLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRR 207 (329)
T ss_pred ceeeccCC--CCcccHHHhhhhHHHHHhhCCCCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecC
Confidence 45666655 47788999999999999886566667878877666777543332110 00111100111121
Q ss_pred hHHHHHHHHHc-CCCcEEEEECchhch--hhHHHhhhcCEEEEeCCcEE
Q 026342 153 NVLDLQVQIRR-LPKPVIAMVAGYAVG--GGHVLHMVCDLTIAADNAIF 198 (240)
Q Consensus 153 ~~~~l~~~i~~-~~kP~IAav~G~a~G--gG~~lal~~D~rias~~a~f 198 (240)
.-..+...|.+ ++--.+...|+---| --+.+..++|+.|+++|+.=
T Consensus 208 Tp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDSin 256 (329)
T COG3660 208 TPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADSIN 256 (329)
T ss_pred CcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecchhh
Confidence 22223333333 666678888888433 45888999999999988653
No 157
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=56.37 E-value=33 Score=27.43 Aligned_cols=63 Identities=27% Similarity=0.285 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHH-----cCCCc
Q 026342 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIR-----RLPKP 167 (240)
Q Consensus 93 Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~-----~~~kP 167 (240)
-.++++.. .++|+.+.+||++++|++-+.++ +- ..+.. ...+...+. ...+|
T Consensus 54 Pmid~~~~---~~~l~~~~~Dp~v~vIlvd~~~G--~g--------------~~~~~----A~~l~~a~~~~~~~~~~~p 110 (153)
T PF00549_consen 54 PMIDPSTR---NEALEIEAADPEVKVILVDIVGG--IG--------------SCEDP----AAGLIPAIKEAKAEGRKKP 110 (153)
T ss_dssp TTT-SSHH---HHHHHHHHTSTTESEEEEEEESS--SS--------------SHHHH----HHHHHHHHSHCTHTTT-SE
T ss_pred CCcCHHHH---HHHHHHHhcCCCccEEEEEeccc--cC--------------chHHH----HHHHHHHHHhccccCCCCc
Confidence 44665544 56777888999999999998773 10 01111 112233332 36799
Q ss_pred EEEEECchhch
Q 026342 168 VIAMVAGYAVG 178 (240)
Q Consensus 168 ~IAav~G~a~G 178 (240)
+|+.|-|-.--
T Consensus 111 vVa~v~GT~~d 121 (153)
T PF00549_consen 111 VVARVCGTNAD 121 (153)
T ss_dssp EEEEEESTTCH
T ss_pred EEEEeeeecCC
Confidence 99999997655
No 158
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=51.94 E-value=34 Score=30.43 Aligned_cols=54 Identities=24% Similarity=0.374 Sum_probs=34.0
Q ss_pred HHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECchhc
Q 026342 102 ELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (240)
Q Consensus 102 ~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~ 177 (240)
++.+.|+.+.+||++++|++-.++. |.+++ + ..+++.+.. ..||+|+..-|..-
T Consensus 192 ~~~d~L~yl~~Dp~T~~I~ly~E~~-----G~~~~--------d--------~~~f~~aa~-~~KPVV~lk~Grs~ 245 (300)
T PLN00125 192 NFVDCLEKFVKDPQTEGIILIGEIG-----GTAEE--------D--------AAAFIKESG-TEKPVVAFIAGLTA 245 (300)
T ss_pred CHHHHHHHHhhCCCCcEEEEEeccC-----CchHH--------H--------HHHHHHHhc-CCCCEEEEEecCCC
Confidence 3557777888899999999888751 11111 0 112222322 38999999999873
No 159
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=49.90 E-value=97 Score=29.86 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=68.2
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHH
Q 026342 84 ITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIR 162 (240)
Q Consensus 84 Itlnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~ 162 (240)
|.=|+|. ..-+|+.+-...-.+.++.+... ++=.|.|.=. ..|..|-|.+.- ...+ +...++.++.
T Consensus 328 iIANqp~~~~G~l~~~sa~KaArFI~~cd~~-~iPlv~L~d~--pGFm~G~~~E~~---------giik-~Gakl~~A~a 394 (526)
T COG4799 328 IIANQPRHLGGVLDIDSADKAARFIRLCDAF-NIPLVFLVDT--PGFMPGTDQEYG---------GIIK-HGAKLLYAVA 394 (526)
T ss_pred EEecCccccccccchHHHHHHHHHHHhhhcc-CCCeEEEeCC--CCCCCChhHHhC---------hHHH-hhhHHHhhHh
Confidence 3345554 46689999888888888655543 5666666543 468888775421 1111 2345788999
Q ss_pred cCCCcEEEEECchhchhhHHHh----hhcCEEEEeCCcEEe
Q 026342 163 RLPKPVIAMVAGYAVGGGHVLH----MVCDLTIAADNAIFG 199 (240)
Q Consensus 163 ~~~kP~IAav~G~a~GgG~~la----l~~D~rias~~a~f~ 199 (240)
+..+|.|..|-|-+.|||...+ +.+|+.+|..++.++
T Consensus 395 eatVPkitvI~rkayGga~~~M~~~~~~~~~~~AwP~a~ia 435 (526)
T COG4799 395 EATVPKITVITRKAYGGAYYVMGGKALGPDFNYAWPTAEIA 435 (526)
T ss_pred hccCCeEEEEecccccceeeeecCccCCCceeEecCcceee
Confidence 9999999999999999986543 345555555554444
No 160
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=48.54 E-value=22 Score=33.41 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=36.2
Q ss_pred HHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECchhc
Q 026342 102 ELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (240)
Q Consensus 102 ~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~ 177 (240)
.+.+.++.+.+|+++++|++..++- . +.. .+.+..++..+ .||||+..-|..-
T Consensus 190 ~~~d~l~~l~~D~~t~~I~ly~E~~------------~-----~~~-----~f~~aa~~a~~-~KPVv~~k~Grs~ 242 (447)
T TIGR02717 190 DESDLLEYLADDPDTKVILLYLEGI------------K-----DGR-----KFLKTAREISK-KKPIVVLKSGTSE 242 (447)
T ss_pred CHHHHHHHHhhCCCCCEEEEEecCC------------C-----CHH-----HHHHHHHHHcC-CCCEEEEecCCCh
Confidence 4568888888999999999987751 0 111 12233445544 8999999998863
No 161
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=44.07 E-value=17 Score=33.46 Aligned_cols=100 Identities=16% Similarity=0.218 Sum_probs=51.4
Q ss_pred CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEE--eeCCCCCcccCCCccc-cccCCccc--hhhhhhhh
Q 026342 79 EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL--TGKGTEAFCSGGDQAL-RTRDGYAD--YENFGRLN 153 (240)
Q Consensus 79 ~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVl--tg~g~~~FcaG~Dl~~-~~~~~~~~--~~~~~~~~ 153 (240)
++|++|++ +.|+.....++.++++.++.+ .++.+|| ++.++..+....++.. +....... ........
T Consensus 194 ~~IgYi~i------~~F~~~~~~~~~~~l~~l~~~-~~~glIlDLR~N~GG~~~~a~~ia~~f~~~~~~~~~~~~~~~~~ 266 (389)
T PLN00049 194 PKIGYIKL------TTFNQNASSAVKEAIETLRAN-GVDAFVLDLRDNSGGLFPAGIEIAKLWLDKGVIVYIADSRGVRD 266 (389)
T ss_pred CCEEEEEe------ccccchhHHHHHHHHHHHHHC-CCCEEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCcee
Confidence 47888888 346667788999999998765 3677777 4444223222222211 11111000 00000000
Q ss_pred HHHHH-HHHHcCCCcEEEEECchhchhhHHHhh
Q 026342 154 VLDLQ-VQIRRLPKPVIAMVAGYAVGGGHVLHM 185 (240)
Q Consensus 154 ~~~l~-~~i~~~~kP~IAav~G~a~GgG~~lal 185 (240)
..... .......+|++..+|+.+..++=.++.
T Consensus 267 ~~~~~~~~~~~~~~PvvVLvn~~TaSasEi~a~ 299 (389)
T PLN00049 267 IYDADGSSAIATSEPLAVLVNKGTASASEILAG 299 (389)
T ss_pred EEecCCCccccCCCCEEEEECCCCccHHHHHHH
Confidence 00000 001134689999999999877654443
No 162
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=39.94 E-value=69 Score=28.28 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=19.4
Q ss_pred HHHHHHHHhhhCCCeeEEEEeeCC
Q 026342 102 ELIRAFNDARDDSSVGVIILTGKG 125 (240)
Q Consensus 102 ~L~~~l~~~~~d~~v~vvVltg~g 125 (240)
++.+.|+.+.+||++++|++..++
T Consensus 185 ~~~D~l~~l~~Dp~T~~I~lylE~ 208 (286)
T TIGR01019 185 SFIDVLEAFEKDPETEAIVMIGEI 208 (286)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEec
Confidence 345777788889999999998875
No 163
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=39.88 E-value=91 Score=22.24 Aligned_cols=48 Identities=21% Similarity=0.244 Sum_probs=31.5
Q ss_pred EEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCC
Q 026342 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (240)
Q Consensus 71 v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g 125 (240)
+.++. .+++.+|++..+ ++.....++.+.+..+..++..+.|++--.+
T Consensus 5 i~~~~--~~~~~vi~~~G~-----l~~~~~~~~~~~l~~~~~~~~~~~vvidls~ 52 (108)
T TIGR00377 5 IETEV--QEGVVIVRLSGE-----LDAHTAPLLREKVTPAAERTGPRPIVLDLED 52 (108)
T ss_pred EEEEE--ECCEEEEEEecc-----cccccHHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 44444 688999999743 5555566677777666554566777776554
No 164
>PRK06091 membrane protein FdrA; Validated
Probab=39.79 E-value=66 Score=31.21 Aligned_cols=52 Identities=27% Similarity=0.370 Sum_probs=31.3
Q ss_pred HHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECchhc
Q 026342 103 LIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (240)
Q Consensus 103 L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~ 177 (240)
+.+.++.+.+||+.++|++.+.-+ . +..+ .+++..+.++.||+|+..-|..-
T Consensus 240 ~~D~L~~L~~DP~TkvIvly~kpp-a-------------------E~v~---~~fl~aar~~~KPVVvlk~Grs~ 291 (555)
T PRK06091 240 ALTALEMLSADEKSEVIAFVSKPP-A-------------------EAVR---LKIINAMKATGKPVVALFLGYTP 291 (555)
T ss_pred HHHHHHHHhhCCCCcEEEEEEecC-c-------------------hHHH---HHHHHHHhhCCCCEEEEEecCCc
Confidence 345555666677777777666431 0 0011 13455566679999999999644
No 165
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=39.68 E-value=1.1e+02 Score=21.89 Aligned_cols=43 Identities=19% Similarity=0.301 Sum_probs=30.0
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCC
Q 026342 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (240)
Q Consensus 78 ~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g 125 (240)
.+++.++.+..+ |+..-..++.+.+..+-..+..+.+||--.+
T Consensus 6 ~~~~~vi~l~G~-----L~f~~~~~~~~~l~~~~~~~~~~~vilDls~ 48 (106)
T TIGR02886 6 KGDVLIVRLSGE-----LDHHTAERVRRKIDDAIERRPIKHLILNLKN 48 (106)
T ss_pred ECCEEEEEEecc-----cchhhHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 678999999654 6666777777777665443456788886655
No 166
>PLN02312 acyl-CoA oxidase
Probab=37.29 E-value=33 Score=34.11 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=18.1
Q ss_pred CcchhHH--HhHhHHHhhhccccC
Q 026342 1 MAPQIDS--ARRRMTAVANHLVPV 22 (240)
Q Consensus 1 ~~~~~~~--~~~r~~~~~~~~~~~ 22 (240)
|.+.|++ +.||+..|++||.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (680)
T PLN02312 1 MMAGMSPSAAARRAHVLANHLAQS 24 (680)
T ss_pred CCCccchhHHHHHHHHHHHhccCC
Confidence 6777876 559999999999775
No 167
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=37.28 E-value=77 Score=28.05 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=19.1
Q ss_pred HHHHHHHhhhCCCeeEEEEeeCC
Q 026342 103 LIRAFNDARDDSSVGVIILTGKG 125 (240)
Q Consensus 103 L~~~l~~~~~d~~v~vvVltg~g 125 (240)
+.+.|+.+.+||++++|++..++
T Consensus 188 ~~D~l~~l~~Dp~T~~I~lylE~ 210 (291)
T PRK05678 188 FIDVLEAFEEDPETEAIVMIGEI 210 (291)
T ss_pred HHHHHHHHhhCCCCcEEEEEEec
Confidence 45777888899999999998875
No 168
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=35.82 E-value=71 Score=24.44 Aligned_cols=44 Identities=25% Similarity=0.348 Sum_probs=30.0
Q ss_pred EEEEEcCCCCCCCC--C----------HHHHHHHHHHHHHh--hhCCCeeEEEEeeCC
Q 026342 82 AKITINRPDRRNAF--R----------PHTVKELIRAFNDA--RDDSSVGVIILTGKG 125 (240)
Q Consensus 82 ~~Itlnrp~~~Nal--~----------~~~~~~L~~~l~~~--~~d~~v~vvVltg~g 125 (240)
..|+.+-|.|+..= + ..++.++.+.+.+. .+.+.++.|||.|.|
T Consensus 26 ~~i~~~ip~K~~~Gg~s~~rf~r~~~~~~f~~~i~~~l~~~f~~~~~~~~~iIiaGPG 83 (133)
T PF03464_consen 26 QRIESNIPGKHKKGGQSQRRFEREKALEKFFKEIAEALKKYFLVNFDDVKCIIIAGPG 83 (133)
T ss_dssp EEEE-GHCCCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHCCCHTTTCSEEEEEEST
T ss_pred EEEEecCCCccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccEEEEECCH
Confidence 45777778876542 2 35566666666666 556789999999987
No 169
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=34.65 E-value=1.2e+02 Score=22.05 Aligned_cols=43 Identities=19% Similarity=0.327 Sum_probs=35.4
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCC--------eeEEEEeeCC
Q 026342 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSS--------VGVIILTGKG 125 (240)
Q Consensus 78 ~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~--------v~vvVltg~g 125 (240)
.+++.+++++.| |+.....++.+.+..+..... ++.|||--.+
T Consensus 7 ~~~v~ii~~~g~-----l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~ 57 (117)
T PF01740_consen 7 HDGVLIIRLDGP-----LFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSG 57 (117)
T ss_dssp ETTEEEEEEESE-----ESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETT
T ss_pred ECCEEEEEEeeE-----EEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEe
Confidence 689999999866 888888999999888777664 7889988765
No 170
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=31.39 E-value=1.3e+02 Score=24.52 Aligned_cols=37 Identities=19% Similarity=0.456 Sum_probs=26.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEe
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVlt 122 (240)
.+-||.|- +.||......+.+.+.++..+ ...+|+++
T Consensus 155 llllDEPt--~~LD~~~~~~~~~~l~~~~~~-~~tvi~~s 191 (211)
T cd03225 155 ILLLDEPT--AGLDPAGRRELLELLKKLKAE-GKTIIIVT 191 (211)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHc-CCEEEEEe
Confidence 46678885 889988888888888887654 33344444
No 171
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=30.93 E-value=80 Score=21.82 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhhhCCCeeEEEEeeCC
Q 026342 97 PHTVKELIRAFNDARDDSSVGVIILTGKG 125 (240)
Q Consensus 97 ~~~~~~L~~~l~~~~~d~~v~vvVltg~g 125 (240)
.+.+..|.+.++.+..+..-.+.|++|.|
T Consensus 9 ~eA~~~l~~~l~~~~~~~~~~~~II~G~G 37 (83)
T PF01713_consen 9 EEALRALEEFLDEARQRGIRELRIITGKG 37 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTHSEEEEE--ST
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeccC
Confidence 46677888888888877777899999998
No 172
>smart00463 SMR Small MutS-related domain.
Probab=30.36 E-value=1e+02 Score=21.07 Aligned_cols=30 Identities=30% Similarity=0.457 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhhhCCC-eeEEEEeeCCC
Q 026342 97 PHTVKELIRAFNDARDDSS-VGVIILTGKGT 126 (240)
Q Consensus 97 ~~~~~~L~~~l~~~~~d~~-v~vvVltg~g~ 126 (240)
.+.+..|.+.++.+..... -.+.|++|.|.
T Consensus 12 ~eA~~~l~~~l~~~~~~~~~~~~~II~G~G~ 42 (80)
T smart00463 12 EEALTALDKFLNNARLKGLEQKLVIITGKGK 42 (80)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEcccC
Confidence 4677888888888887765 47899999983
No 173
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=30.20 E-value=1.3e+02 Score=24.53 Aligned_cols=39 Identities=15% Similarity=0.360 Sum_probs=28.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|- +.||.....++.+.+.++..+....+|+++.
T Consensus 161 lllLDEP~--~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH 199 (218)
T cd03255 161 IILADEPT--GNLDSETGKEVMELLRELNKEAGTTIVVVTH 199 (218)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 46678885 8999999999999999887643433444443
No 174
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=29.12 E-value=2.9e+02 Score=26.28 Aligned_cols=105 Identities=18% Similarity=0.183 Sum_probs=70.8
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHH
Q 026342 84 ITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIR 162 (240)
Q Consensus 84 Itlnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~ 162 (240)
|.-|+|+ ..-.|..+.-..-.+.++.+.+. .+-.|.|...+ .|-.|.+.+... .. + .-..+..+..
T Consensus 353 Ivgnn~kf~~G~L~s~sa~KgarfIe~c~q~-~IPLi~l~ni~--Gfm~g~~~e~~g---Ia------K-~gAklv~a~a 419 (536)
T KOG0540|consen 353 IVGNNPKFAGGVLFSESAVKGARFIELCDQR-NIPLIFLQNIT--GFMVGRAAEAGG---IA------K-HGAKLVYAVA 419 (536)
T ss_pred EeccCchhcccccchhhhhhhHHHHHHHHhc-CCcEEEEEccC--Cccccchhhhhc---hh------h-hhhhhhhhhh
Confidence 4446664 24567766666666666666543 56677777665 388888876422 10 1 1123566778
Q ss_pred cCCCcEEEEECchhchhhHH---HhhhcCEEEEeCCcEEecc
Q 026342 163 RLPKPVIAMVAGYAVGGGHV---LHMVCDLTIAADNAIFGQT 201 (240)
Q Consensus 163 ~~~kP~IAav~G~a~GgG~~---lal~~D~rias~~a~f~~p 201 (240)
...+|-|..+.|.+.||-.. -++.-|+.++.++|++++-
T Consensus 420 ~akvpkITiit~~syGG~y~m~sr~~~gd~~yawP~A~Iavm 461 (536)
T KOG0540|consen 420 CAKVPKITIITGGSYGGNYAMCSRGYSGDINYAWPNARIAVM 461 (536)
T ss_pred hccCceEEEEecCccCCcccccccccCCceeEEcccceeeec
Confidence 88899999999999997655 4577899999888888763
No 175
>COG3356 Predicted membrane protein [Function unknown]
Probab=29.09 E-value=5.6e+02 Score=25.09 Aligned_cols=52 Identities=15% Similarity=0.248 Sum_probs=38.3
Q ss_pred eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccC
Q 026342 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSG 132 (240)
Q Consensus 70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG 132 (240)
-+.++-+ +...+.|-++ .|-++.++.+++.+++.++ .+ .++|.|.. .++|+|
T Consensus 436 a~v~d~g-~~Rta~Vl~D----sNNi~~~L~~~v~~~v~~l-v~---~veV~TTD--tH~vn~ 487 (578)
T COG3356 436 AAVVDTG-DTRTAYVLFD----SNNITTELREEVRKAVRDL-VS---EVEVVTTD--THYVNG 487 (578)
T ss_pred EEEEecC-CeEEEEEEEe----CCCCcHHHHHHHHHHHHhh-hc---EEEEEecC--Cceecc
Confidence 3455543 4556778886 4779999999999999988 33 46777764 589988
No 176
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=28.76 E-value=1.7e+02 Score=22.90 Aligned_cols=38 Identities=24% Similarity=0.503 Sum_probs=27.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|- +.+|.+....+.+.+.++.++ ..-+|+++.
T Consensus 103 illlDEP~--~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh 140 (163)
T cd03216 103 LLILDEPT--AALTPAEVERLFKVIRRLRAQ-GVAVIFISH 140 (163)
T ss_pred EEEEECCC--cCCCHHHHHHHHHHHHHHHHC-CCEEEEEeC
Confidence 46678885 899999999999999988654 333444443
No 177
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=28.72 E-value=1e+02 Score=26.83 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=18.6
Q ss_pred HHHHHHHhhhCCCeeEEEEeeCC
Q 026342 103 LIRAFNDARDDSSVGVIILTGKG 125 (240)
Q Consensus 103 L~~~l~~~~~d~~v~vvVltg~g 125 (240)
+.++|+.+-.|++.+.+||-|+-
T Consensus 219 FID~L~vFl~D~~t~GIiliGEI 241 (329)
T KOG1255|consen 219 FIDCLEVFLEDPETEGIILIGEI 241 (329)
T ss_pred HHHHHHHHhcCcccceEEEEecc
Confidence 45677777789999999999864
No 178
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.61 E-value=1.4e+02 Score=24.78 Aligned_cols=39 Identities=10% Similarity=0.227 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|. +.||.....+|.+.+.++.++....+++++.
T Consensus 151 llllDEP~--~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh 189 (232)
T cd03300 151 VLLLDEPL--GALDLKLRKDMQLELKRLQKELGITFVFVTH 189 (232)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 46678885 8999999999999999887643444555544
No 179
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=28.14 E-value=1.5e+02 Score=24.25 Aligned_cols=39 Identities=8% Similarity=0.220 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|- +.||.....++.+.+.++..+....+|++|.
T Consensus 162 illlDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH 200 (221)
T TIGR02211 162 LVLADEPT--GNLDNNNAKIIFDLMLELNRELNTSFLVVTH 200 (221)
T ss_pred EEEEeCCC--CcCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 46678885 8999999999999998886543433444443
No 180
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.72 E-value=1.5e+02 Score=24.20 Aligned_cols=38 Identities=16% Similarity=0.306 Sum_probs=26.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEe
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVlt 122 (240)
.+-||.|. +.+|.....++.+.+.++..+....+|+++
T Consensus 152 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tiii~s 189 (214)
T cd03297 152 LLLLDEPF--SALDRALRLQLLPELKQIKKNLNIPVIFVT 189 (214)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHHcCcEEEEEe
Confidence 45677775 889998888888888887654333344444
No 181
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=27.50 E-value=1.6e+02 Score=24.31 Aligned_cols=39 Identities=10% Similarity=0.201 Sum_probs=27.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|- +.||......+.+.+.++..+....+|+++.
T Consensus 167 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH 205 (228)
T PRK10584 167 VLFADEPT--GNLDRQTGDKIADLLFSLNREHGTTLILVTH 205 (228)
T ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 56678885 8899999999999998886543433444443
No 182
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=27.29 E-value=1.6e+02 Score=24.01 Aligned_cols=38 Identities=13% Similarity=0.298 Sum_probs=25.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEe
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVlt 122 (240)
.+-||.|. +.+|......+.+.+.++.+.....+|+++
T Consensus 149 llllDEPt--~~LD~~~~~~~~~~l~~~~~~~~~tii~vs 186 (213)
T TIGR01277 149 ILLLDEPF--SALDPLLREEMLALVKQLCSERQRTLLMVT 186 (213)
T ss_pred EEEEcCCC--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45577775 788888888888888887654343344444
No 183
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=27.19 E-value=1.7e+02 Score=23.27 Aligned_cols=38 Identities=11% Similarity=0.230 Sum_probs=27.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEe
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVlt 122 (240)
.+-||.|- +.||.+..+.+.+.+.++..+....+++++
T Consensus 118 llllDEP~--~~LD~~~~~~~~~~l~~~~~~~~~tiii~s 155 (180)
T cd03214 118 ILLLDEPT--SHLDIAHQIELLELLRRLARERGKTVVMVL 155 (180)
T ss_pred EEEEeCCc--cCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 46678885 899999999999999988654233344444
No 184
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=27.01 E-value=1.8e+02 Score=24.34 Aligned_cols=38 Identities=8% Similarity=0.227 Sum_probs=27.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|. +.||.....+|.+.+.++..+... .||++.
T Consensus 174 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~-tiiivs 211 (236)
T cd03267 174 ILFLDEPT--IGLDVVAQENIRNFLKEYNRERGT-TVLLTS 211 (236)
T ss_pred EEEEcCCC--CCCCHHHHHHHHHHHHHHHhcCCC-EEEEEe
Confidence 46678885 889999999999988887654343 444444
No 185
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.71 E-value=1.6e+02 Score=23.89 Aligned_cols=38 Identities=18% Similarity=0.366 Sum_probs=25.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEe
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVlt 122 (240)
.+-||.|. +.+|.....+|.+.+.++..+....+|+++
T Consensus 149 llllDEP~--~~LD~~~~~~l~~~l~~~~~~~~~tii~~s 186 (211)
T cd03298 149 VLLLDEPF--AALDPALRAEMLDLVLDLHAETKMTVLMVT 186 (211)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45677775 788888888888888877654333344444
No 186
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.27 E-value=1.7e+02 Score=23.87 Aligned_cols=29 Identities=14% Similarity=0.300 Sum_probs=21.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhC
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDD 113 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d 113 (240)
.+-||.|- +.||......+.+.+.++.++
T Consensus 151 ~lllDEPt--~~LD~~~~~~l~~~l~~~~~~ 179 (213)
T cd03259 151 LLLLDEPL--SALDAKLREELREELKELQRE 179 (213)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHH
Confidence 45677775 788888888888888877543
No 187
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.13 E-value=1.6e+02 Score=24.40 Aligned_cols=39 Identities=10% Similarity=0.209 Sum_probs=26.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|- +.+|......+.+.+.++..+....+|+++.
T Consensus 157 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH 195 (235)
T cd03261 157 LLLYDEPT--AGLDPIASGVIDDLIRSLKKELGLTSIMVTH 195 (235)
T ss_pred EEEecCCc--ccCCHHHHHHHHHHHHHHHHhcCcEEEEEec
Confidence 45677875 8899988888888888876543333444443
No 188
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=26.08 E-value=1.3e+02 Score=25.56 Aligned_cols=35 Identities=20% Similarity=0.463 Sum_probs=27.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCC
Q 026342 88 RPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (240)
Q Consensus 88 rp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g 125 (240)
.++....++.+.+++|.+.+.++. ..++|++.|.|
T Consensus 13 ~~~~~~~~~~~~l~~l~~~l~~l~---g~~vvlVhGgg 47 (252)
T cd04241 13 DKDRPETIREENLERIARELAEAI---DEKLVLVHGGG 47 (252)
T ss_pred cCCCCCccCHHHHHHHHHHHHhcc---CCCEEEEECCC
Confidence 444456799999999999998876 46788889877
No 189
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.81 E-value=1.8e+02 Score=23.87 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=25.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|- +.||.....++.+.+.++.++....+|+++.
T Consensus 152 lllLDEPt--~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH 190 (220)
T cd03293 152 VLLLDEPF--SALDALTREQLQEELLDIWRETGKTVLLVTH 190 (220)
T ss_pred EEEECCCC--CCCCHHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 46677775 7888888888888888775443333444443
No 190
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.80 E-value=1.8e+02 Score=23.86 Aligned_cols=39 Identities=10% Similarity=0.298 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|- +.||....+.+.+.+.++..+....+|+++.
T Consensus 152 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH 190 (220)
T cd03265 152 VLFLDEPT--IGLDPQTRAHVWEYIEKLKEEFGMTILLTTH 190 (220)
T ss_pred EEEEcCCc--cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 46678885 8999999999999999887653444455444
No 191
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=25.61 E-value=1.7e+02 Score=24.14 Aligned_cols=40 Identities=8% Similarity=0.155 Sum_probs=29.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeC
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~ 124 (240)
.+-||.|- +.||......+.+.+.++..+....+|+++..
T Consensus 158 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~ 197 (225)
T PRK10247 158 VLLLDEIT--SALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197 (225)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 46678885 89999999999999998866534445555543
No 192
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=25.57 E-value=45 Score=27.62 Aligned_cols=94 Identities=18% Similarity=0.152 Sum_probs=50.0
Q ss_pred EEEEEEcCCCCCCCCC-HHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccc-------cccCCccch--hhhh
Q 026342 81 IAKITINRPDRRNAFR-PHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQAL-------RTRDGYADY--ENFG 150 (240)
Q Consensus 81 v~~Itlnrp~~~Nal~-~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~-------~~~~~~~~~--~~~~ 150 (240)
|+.|+++. |. ....+++.+++....+ +++.+||-=.+ ..|+++.. +........ ....
T Consensus 61 igYi~i~~------f~~~~~~~~~~~~~~~~~~--~~~~lIiDLR~----N~GG~~~~a~~l~~~~~~~~~~~~~~~~~~ 128 (224)
T cd06567 61 IGYIRIPS------FSAESTAEELREALAELKK--GVKGLILDLRN----NPGGLLSAAVELASLFLPKGKIVVTTRRRG 128 (224)
T ss_pred eEEEEECc------cCCcchHHHHHHHHHHHHc--CCCEEEEEcCC----CCCccHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 77888864 33 6677888888888876 57788874322 23454321 111110000 0000
Q ss_pred h-hhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhh
Q 026342 151 R-LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186 (240)
Q Consensus 151 ~-~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~ 186 (240)
. .........-....+|++..+|+.+..++=.++.+
T Consensus 129 ~~~~~~~~~~~~~~~~~pv~vL~~~~taSaaE~~a~~ 165 (224)
T cd06567 129 GNETEYVAPGGGSLYDGPLVVLVNEGSASASEIFAGA 165 (224)
T ss_pred CceeEEecCCCCcccCCCEEEEECCCCccHHHHHHHH
Confidence 0 00000001123467999999999998887555543
No 193
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=25.45 E-value=93 Score=30.04 Aligned_cols=43 Identities=19% Similarity=0.347 Sum_probs=34.4
Q ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCC
Q 026342 84 ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD 134 (240)
Q Consensus 84 Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~D 134 (240)
+.|+.|. |=||.++++.|.++|..+. ..||+-+.. +.|....-
T Consensus 461 LiLDEPT--NhLDi~s~~aLe~aL~~f~-----Gtvl~VSHD-r~Fl~~va 503 (530)
T COG0488 461 LLLDEPT--NHLDIESLEALEEALLDFE-----GTVLLVSHD-RYFLDRVA 503 (530)
T ss_pred EEEcCCC--ccCCHHHHHHHHHHHHhCC-----CeEEEEeCC-HHHHHhhc
Confidence 5589996 9999999999999999886 466666666 78876654
No 194
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=25.39 E-value=1.8e+02 Score=24.14 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=18.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhC
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDD 113 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d 113 (240)
.+-||.|- +.+|.....++.+.+.++..+
T Consensus 135 lllLDEPt--~gLD~~~~~~l~~~l~~~~~~ 163 (230)
T TIGR01184 135 VLLLDEPF--GALDALTRGNLQEELMQIWEE 163 (230)
T ss_pred EEEEcCCC--cCCCHHHHHHHHHHHHHHHHh
Confidence 35566664 677777777777777666543
No 195
>PRK10908 cell division protein FtsE; Provisional
Probab=25.15 E-value=1.9e+02 Score=23.69 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=27.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|. +.||....+++.+.+.++..+ ...+|+++.
T Consensus 158 llllDEPt--~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH 195 (222)
T PRK10908 158 VLLADEPT--GNLDDALSEGILRLFEEFNRV-GVTVLMATH 195 (222)
T ss_pred EEEEeCCC--CcCCHHHHHHHHHHHHHHHHC-CCEEEEEeC
Confidence 46678885 899999999999999888654 333444443
No 196
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=25.09 E-value=1.9e+02 Score=23.51 Aligned_cols=37 Identities=14% Similarity=0.428 Sum_probs=25.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEe
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVlt 122 (240)
.+-||.|. +.||.....++.+.+.++.+. ...+|+++
T Consensus 153 llllDEPt--~~LD~~~~~~l~~~l~~~~~~-~~tvi~~s 189 (213)
T cd03235 153 LLLLDEPF--AGVDPKTQEDIYELLRELRRE-GMTILVVT 189 (213)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHhc-CCEEEEEe
Confidence 45578885 889999999999999887653 33334433
No 197
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=25.08 E-value=3.3e+02 Score=24.89 Aligned_cols=52 Identities=17% Similarity=0.168 Sum_probs=32.9
Q ss_pred eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCC
Q 026342 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (240)
Q Consensus 70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g 125 (240)
++.+.. .++-..+.++..+..|..-+..=--+..+-+.+. + ++-+|||||.|
T Consensus 235 hl~v~~--~~g~~~~~l~~~~~~~~~rPsvDvlF~S~A~~~~-~-~~~~viLTGmG 286 (350)
T COG2201 235 HLEVSR--SGGNYRLKLTDGPPVNGHRPSVDVLFRSVAELYG-S-NALGVILTGMG 286 (350)
T ss_pred eEEEEe--cCCeeEEEeCCCCCCCCcCCChhHHHHHHHHHcC-C-CEEEEEEecCC
Confidence 455555 5666888888777777776544333333333333 3 56799999998
No 198
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=24.90 E-value=1.8e+02 Score=24.92 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=29.8
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 82 ~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
-.+-||.|- +.||.....++.+.+.++..+....+|+++.
T Consensus 163 ~lllLDEPt--~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH 202 (269)
T PRK11831 163 DLIMFDEPF--VGQDPITMGVLVKLISELNSALGVTCVVVSH 202 (269)
T ss_pred CEEEEcCCC--ccCCHHHHHHHHHHHHHHHHhcCcEEEEEec
Confidence 356678885 8999999999999999987654444454444
No 199
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=24.78 E-value=1.8e+02 Score=25.26 Aligned_cols=40 Identities=15% Similarity=0.472 Sum_probs=30.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeC
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~ 124 (240)
.+-||.|- +.||.....+|.+.+.++..+....+|++|..
T Consensus 166 illlDEPt--~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~ 205 (286)
T PRK13646 166 IIVLDEPT--AGLDPQSKRQVMRLLKSLQTDENKTIILVSHD 205 (286)
T ss_pred EEEEECCc--ccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 46678885 89999999999999999875545556666654
No 200
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=24.77 E-value=2e+02 Score=23.74 Aligned_cols=39 Identities=13% Similarity=0.466 Sum_probs=28.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|- +.||.....++.+.+.++.++....+|+++.
T Consensus 152 illlDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH 190 (230)
T TIGR03410 152 LLLLDEPT--EGIQPSIIKDIGRVIRRLRAEGGMAILLVEQ 190 (230)
T ss_pred EEEecCCc--ccCCHHHHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 46678885 8999999999999999887643433444443
No 201
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=24.61 E-value=1.9e+02 Score=23.75 Aligned_cols=29 Identities=7% Similarity=0.294 Sum_probs=20.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhC
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDD 113 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d 113 (240)
.+-||.|- +.||.....++.+.+.++..+
T Consensus 166 lllLDEPt--~~LD~~~~~~l~~~l~~~~~~ 194 (228)
T cd03257 166 LLIADEPT--SALDVSVQAQILDLLKKLQEE 194 (228)
T ss_pred EEEecCCC--CCCCHHHHHHHHHHHHHHHHH
Confidence 35566664 777877777777777777654
No 202
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.44 E-value=2.1e+02 Score=22.64 Aligned_cols=39 Identities=18% Similarity=0.389 Sum_probs=27.9
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEe
Q 026342 82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122 (240)
Q Consensus 82 ~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVlt 122 (240)
-.+-||.|. +.+|......+.+.+.++..+....+++++
T Consensus 120 ~llilDEP~--~~LD~~~~~~l~~~l~~~~~~~~~tiii~s 158 (178)
T cd03229 120 DVLLLDEPT--SALDPITRREVRALLKSLQAQLGITVVLVT 158 (178)
T ss_pred CEEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 356678885 899999999999999988765333344444
No 203
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.44 E-value=1.8e+02 Score=24.10 Aligned_cols=39 Identities=13% Similarity=0.316 Sum_probs=27.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|- +.+|......+.+.+.++.++....+|+++.
T Consensus 165 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH 203 (241)
T cd03256 165 LILADEPV--ASLDPASSRQVMDLLKRINREEGITVIVSLH 203 (241)
T ss_pred EEEEeCcc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 46678885 8899999999999998876543433444443
No 204
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=24.36 E-value=1.9e+02 Score=23.48 Aligned_cols=38 Identities=8% Similarity=0.130 Sum_probs=24.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEe
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVlt 122 (240)
.+-||.|. +.+|.....++.+.+.++..+....+|+++
T Consensus 151 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tvi~~s 188 (213)
T cd03301 151 VFLMDEPL--SNLDAKLRVQMRAELKRLQQRLGTTTIYVT 188 (213)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 45677775 788888888888888877654333334333
No 205
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=24.25 E-value=2.1e+02 Score=23.34 Aligned_cols=38 Identities=16% Similarity=0.413 Sum_probs=27.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|- +.||.....++.+.+.++.+. ...+|++|.
T Consensus 159 llllDEPt--~~LD~~~~~~l~~~l~~~~~~-~~tii~vsH 196 (216)
T TIGR00960 159 LLLADEPT--GNLDPELSRDIMRLFEEFNRR-GTTVLVATH 196 (216)
T ss_pred EEEEeCCC--CcCCHHHHHHHHHHHHHHHHC-CCEEEEEeC
Confidence 46678885 899999999999999988654 333444443
No 206
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=24.09 E-value=2e+02 Score=23.80 Aligned_cols=38 Identities=5% Similarity=0.252 Sum_probs=25.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEe
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVlt 122 (240)
.+-||.|- +.||.....++.+.+.++..+....+|+++
T Consensus 166 lllLDEPt--~~LD~~~~~~l~~~l~~~~~~~g~tvii~s 203 (233)
T PRK11629 166 LVLADEPT--GNLDARNADSIFQLLGELNRLQGTAFLVVT 203 (233)
T ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 45677775 788888888888888887544333344444
No 207
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=23.94 E-value=2.2e+02 Score=22.70 Aligned_cols=38 Identities=16% Similarity=0.385 Sum_probs=28.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|- +.||......+.+.+.++..+ ...+|+++.
T Consensus 148 llllDEPt--~~LD~~~~~~~~~~l~~~~~~-~~tili~sH 185 (190)
T TIGR01166 148 VLLLDEPT--AGLDPAGREQMLAILRRLRAE-GMTVVISTH 185 (190)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHc-CCEEEEEee
Confidence 46678885 899999999999999988654 334444443
No 208
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=23.90 E-value=2e+02 Score=22.84 Aligned_cols=40 Identities=25% Similarity=0.463 Sum_probs=31.5
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeC
Q 026342 82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124 (240)
Q Consensus 82 ~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~ 124 (240)
.++-++.|+ +-|.+.+...|.+.|..+.. ..+.+++-|..
T Consensus 259 ~illiDEpE--~~LHp~~q~~l~~~l~~~~~-~~~QviitTHS 298 (303)
T PF13304_consen 259 SILLIDEPE--NHLHPSWQRKLIELLKELSK-KNIQVIITTHS 298 (303)
T ss_dssp SEEEEESSS--TTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-
T ss_pred eEEEecCCc--CCCCHHHHHHHHHHHHhhCc-cCCEEEEeCcc
Confidence 447789998 89999999999999988776 45677766653
No 209
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=23.83 E-value=2.2e+02 Score=22.38 Aligned_cols=37 Identities=11% Similarity=0.238 Sum_probs=26.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|- +.+|.....++.+.+.++.+. .. .+++..
T Consensus 117 ~lllDEPt--~~LD~~~~~~l~~~l~~~~~~-~~-tii~~s 153 (173)
T cd03246 117 ILVLDEPN--SHLDVEGERALNQAIAALKAA-GA-TRIVIA 153 (173)
T ss_pred EEEEECCc--cccCHHHHHHHHHHHHHHHhC-CC-EEEEEe
Confidence 46678885 899999999999999888653 33 344443
No 210
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=23.75 E-value=1.3e+02 Score=25.87 Aligned_cols=91 Identities=20% Similarity=0.223 Sum_probs=53.1
Q ss_pred CCCCCHHHHHHHHHHHHHhhhCCCeeEEEE--eeCCCCCcccCCCccccccCCccchhh-hh-hh---hHHHHHHHHHcC
Q 026342 92 RNAFRPHTVKELIRAFNDARDDSSVGVIIL--TGKGTEAFCSGGDQALRTRDGYADYEN-FG-RL---NVLDLQVQIRRL 164 (240)
Q Consensus 92 ~Nal~~~~~~~L~~~l~~~~~d~~v~vvVl--tg~g~~~FcaG~Dl~~~~~~~~~~~~~-~~-~~---~~~~l~~~i~~~ 164 (240)
...+..+.-..|.+++.+.-.+..-+-||+ --.| ..++ ..++ ++ .. ...+-+...+.-
T Consensus 40 ~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~s-Qa~g--------------rreEllGi~~alAhla~a~a~AR~~ 104 (234)
T PF06833_consen 40 HGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPS-QAYG--------------RREELLGINQALAHLAKAYALARLA 104 (234)
T ss_pred CCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCc-cccc--------------hHHHHhhHHHHHHHHHHHHHHHHHc
Confidence 577888887788777665443333233333 3222 2221 1111 11 11 122334455667
Q ss_pred CCcEEEEECchhchhhHH-HhhhcCEEEEeCCcE
Q 026342 165 PKPVIAMVAGYAVGGGHV-LHMVCDLTIAADNAI 197 (240)
Q Consensus 165 ~kP~IAav~G~a~GgG~~-lal~~D~rias~~a~ 197 (240)
.-|+|+.|-|.|+.|||- -.+.+|-.||-+++.
T Consensus 105 GHpvI~Lv~G~A~SGaFLA~GlqA~rl~AL~ga~ 138 (234)
T PF06833_consen 105 GHPVIGLVYGKAMSGAFLAHGLQANRLIALPGAM 138 (234)
T ss_pred CCCeEEEEecccccHHHHHHHHHhcchhcCCCCe
Confidence 899999999999999975 568888887765443
No 211
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=23.53 E-value=1.8e+02 Score=24.58 Aligned_cols=39 Identities=13% Similarity=0.355 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.|-||.|. +.||......|.+.+.++..+....+|+++.
T Consensus 173 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH 211 (262)
T PRK09984 173 VILADEPI--ASLDPESARIVMDTLRDINQNDGITVVVTLH 211 (262)
T ss_pred EEEecCcc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 46678885 8899999999999998886543434444444
No 212
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=23.52 E-value=1.9e+02 Score=24.05 Aligned_cols=39 Identities=21% Similarity=0.334 Sum_probs=26.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|- +.||......+.+.+.++.++....+|++|.
T Consensus 166 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH 204 (243)
T TIGR02315 166 LILADEPI--ASLDPKTSKQVMDYLKRINKEDGITVIINLH 204 (243)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 45578885 8899999999988888876543333444443
No 213
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=23.49 E-value=1.3e+02 Score=27.08 Aligned_cols=44 Identities=16% Similarity=0.238 Sum_probs=31.0
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 78 ~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+.+..+|+++.+ |.-+.+.+.++.++++.+...+++.+|+...
T Consensus 179 ~~~~iLvt~H~~t--~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~h 222 (346)
T PF02350_consen 179 PKPYILVTLHPVT--NEDNPERLEQILEALKALAERQNVPVIFPLH 222 (346)
T ss_dssp TSEEEEEE-S-CC--CCTHH--HHHHHHHHHHHHHHTTEEEEEE--
T ss_pred CCCEEEEEeCcch--hcCChHHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 6788899999887 6556888899999999988877787777665
No 214
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=23.43 E-value=2e+02 Score=24.61 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=24.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEe
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVlt 122 (240)
.+-||.|- |.||......+.+.+.++..+....+|+++
T Consensus 154 lllLDEPt--~~LD~~~~~~l~~~L~~~~~~~~~tviivs 191 (257)
T PRK11247 154 LLLLDEPL--GALDALTRIEMQDLIESLWQQHGFTVLLVT 191 (257)
T ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 45567774 888888888888888877543333344443
No 215
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=23.40 E-value=1.9e+02 Score=24.69 Aligned_cols=39 Identities=13% Similarity=0.176 Sum_probs=27.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|- +.||......|.+.+.++.++....+|+++.
T Consensus 170 lllLDEPt--~~LD~~~~~~l~~~l~~~~~~~g~tviivsH 208 (267)
T PRK15112 170 VIIADEAL--ASLDMSMRSQLINLMLELQEKQGISYIYVTQ 208 (267)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHHcCcEEEEEeC
Confidence 46678885 8899999999988888876543333444443
No 216
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.25 E-value=2.2e+02 Score=22.40 Aligned_cols=38 Identities=8% Similarity=0.382 Sum_probs=28.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-+|.|. +.+|.....++.+.+.++.++ ...+|+++.
T Consensus 116 illlDEPt--~~LD~~~~~~l~~~l~~~~~~-g~tiii~th 153 (173)
T cd03230 116 LLILDEPT--SGLDPESRREFWELLRELKKE-GKTILLSSH 153 (173)
T ss_pred EEEEeCCc--cCCCHHHHHHHHHHHHHHHHC-CCEEEEECC
Confidence 46678885 899999999999999988765 333444443
No 217
>PF04439 Adenyl_transf: Streptomycin adenylyltransferase; InterPro: IPR007530 Also known as aminoglycoside 6-adenylyltransferase (2.7.7 from EC), this protein confers resistance to aminoglycoside antibiotics.; PDB: 2PBE_A.
Probab=23.18 E-value=81 Score=27.75 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=13.6
Q ss_pred HHHHHHhhhCCCeeEEEEeeCC
Q 026342 104 IRAFNDARDDSSVGVIILTGKG 125 (240)
Q Consensus 104 ~~~l~~~~~d~~v~vvVltg~g 125 (240)
...++.+.+|+.||+|+++|.-
T Consensus 9 ~~Il~~A~~d~rIraV~l~GSR 30 (282)
T PF04439_consen 9 DLILEFAKQDERIRAVILNGSR 30 (282)
T ss_dssp HHHHHHHHH-TTEEEEEE----
T ss_pred HHHHHHHhcCCcEEEEEEecCC
Confidence 3455667799999999999963
No 218
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=23.13 E-value=2e+02 Score=24.43 Aligned_cols=39 Identities=13% Similarity=0.240 Sum_probs=26.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|- +.||......+.+.+.++.+.....+|+++.
T Consensus 149 lllLDEPt--~~LD~~~~~~l~~~L~~~~~~~g~tviivsH 187 (255)
T PRK11248 149 LLLLDEPF--GALDAFTREQMQTLLLKLWQETGKQVLLITH 187 (255)
T ss_pred EEEEeCCC--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 46678885 8899999999999888874433333444443
No 219
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=22.89 E-value=2.1e+02 Score=24.19 Aligned_cols=39 Identities=13% Similarity=0.271 Sum_probs=28.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|- +.||.....+|.+.+..+..+....+|+++.
T Consensus 172 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tii~isH 210 (258)
T PRK11701 172 LVFMDEPT--GGLDVSVQARLLDLLRGLVRELGLAVVIVTH 210 (258)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 46678885 8999999999999998876543444444444
No 220
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=22.79 E-value=2e+02 Score=24.94 Aligned_cols=40 Identities=15% Similarity=0.432 Sum_probs=30.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeC
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~ 124 (240)
.+-||.|- +.||.....++.+.+.++..+....+|++|..
T Consensus 166 llllDEPt--~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd 205 (290)
T PRK13634 166 VLVLDEPT--AGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHS 205 (290)
T ss_pred EEEEECCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 46678885 89999999999999998876544555555553
No 221
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=22.75 E-value=2.2e+02 Score=23.89 Aligned_cols=39 Identities=21% Similarity=0.468 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|- +.||......|.+.+.++.+.....+|+++.
T Consensus 174 llllDEPt--~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH 212 (255)
T PRK11300 174 ILMLDEPA--AGLNPKETKELDELIAELRNEHNVTVLLIEH 212 (255)
T ss_pred EEEEcCCc--cCCCHHHHHHHHHHHHHHHhhcCCEEEEEeC
Confidence 46678885 8999999999999999886543444455444
No 222
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=22.62 E-value=2.4e+02 Score=22.73 Aligned_cols=38 Identities=21% Similarity=0.427 Sum_probs=27.3
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEe
Q 026342 82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122 (240)
Q Consensus 82 ~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVlt 122 (240)
-.+-||.|- +.||......+.+.++++..+ ...+|+++
T Consensus 154 ~llllDEPt--~~LD~~~~~~l~~~l~~~~~~-~~tii~~s 191 (206)
T TIGR03608 154 PLILADEPT--GSLDPKNRDEVLDLLLELNDE-GKTIIIVT 191 (206)
T ss_pred CEEEEeCCc--CCCCHHHHHHHHHHHHHHHhc-CCEEEEEe
Confidence 346678885 899999999999999888654 33344444
No 223
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=22.60 E-value=1.2e+02 Score=29.48 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=24.8
Q ss_pred hHHHHHHHHHcCCCcEEEEECchhchhhHHHhhh
Q 026342 153 NVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186 (240)
Q Consensus 153 ~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~ 186 (240)
++...+..+.++..|+|.+||-+..----++..-
T Consensus 360 NL~RHIenvr~FGvPvVVAINKFd~DTe~Ei~~I 393 (557)
T PRK13505 360 NLERHIENIRKFGVPVVVAINKFVTDTDAEIAAL 393 (557)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHH
Confidence 3445566778899999999999887665554433
No 224
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.59 E-value=2e+02 Score=24.01 Aligned_cols=39 Identities=18% Similarity=0.341 Sum_probs=26.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|- +.+|......+.+.+.++..+....+|+++.
T Consensus 156 llllDEPt--~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH 194 (242)
T cd03295 156 LLLMDEPF--GALDPITRDQLQEEFKRLQQELGKTIVFVTH 194 (242)
T ss_pred EEEecCCc--ccCCHHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 46678885 8899999999988888876542333444443
No 225
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=22.57 E-value=2e+02 Score=24.79 Aligned_cols=40 Identities=15% Similarity=0.382 Sum_probs=29.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeC
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~ 124 (240)
.+-||.|. +.||.....+|.+.+.++.++...-+|+++..
T Consensus 165 llllDEPt--~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~ 204 (280)
T PRK13633 165 CIIFDEPT--AMLDPSGRREVVNTIKELNKKYGITIILITHY 204 (280)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 46678885 89999999999999998865434445555544
No 226
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=22.54 E-value=2.5e+02 Score=22.66 Aligned_cols=38 Identities=11% Similarity=0.241 Sum_probs=27.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeC
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~ 124 (240)
.+-||.|- +.||......+.+.++++.+. . +.+|+...
T Consensus 132 illlDEP~--~~LD~~~~~~l~~~l~~~~~~-~-~tiii~sh 169 (194)
T cd03213 132 LLFLDEPT--SGLDSSSALQVMSLLRRLADT-G-RTIICSIH 169 (194)
T ss_pred EEEEeCCC--cCCCHHHHHHHHHHHHHHHhC-C-CEEEEEec
Confidence 46678885 899999999999999988654 3 34444443
No 227
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.49 E-value=2.1e+02 Score=23.62 Aligned_cols=39 Identities=13% Similarity=0.372 Sum_probs=26.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|- +.+|......+.+.+.++.++....+|+++.
T Consensus 161 lllLDEP~--~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH 199 (233)
T cd03258 161 VLLCDEAT--SALDPETTQSILALLRDINRELGLTIVLITH 199 (233)
T ss_pred EEEecCCC--CcCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 45677775 8888888888888888776543333444443
No 228
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=22.45 E-value=2.1e+02 Score=24.00 Aligned_cols=39 Identities=13% Similarity=0.321 Sum_probs=28.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|. +.||......+.+.+.++..+....+|+++.
T Consensus 167 llllDEP~--~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH 205 (252)
T TIGR03005 167 VMLFDEVT--SALDPELVGEVLNVIRRLASEHDLTMLLVTH 205 (252)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 56678885 8899999999999898876543444555554
No 229
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=22.37 E-value=2e+02 Score=25.54 Aligned_cols=40 Identities=15% Similarity=0.433 Sum_probs=31.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeC
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~ 124 (240)
.|.+|.|- ++||.....++.+.|.++.++....+|++|..
T Consensus 179 llilDEPt--s~LD~~~~~~i~~lL~~l~~~~g~tii~itHd 218 (330)
T PRK15093 179 LLIADEPT--NAMEPTTQAQIFRLLTRLNQNNNTTILLISHD 218 (330)
T ss_pred EEEEeCCC--CcCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 46678885 89999999999999999977555556666653
No 230
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=22.34 E-value=3.2e+02 Score=24.34 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHHHHHhhhCCCee-EEEEeeCC
Q 026342 93 NAFRPHTVKELIRAFNDARDDSSVG-VIILTGKG 125 (240)
Q Consensus 93 Nal~~~~~~~L~~~l~~~~~d~~v~-vvVltg~g 125 (240)
.-++++.+.+|.+.+++.-+++++. +||+.|.+
T Consensus 55 s~~t~~~w~~la~~i~~~~~~~~~dG~VVtHGTD 88 (323)
T smart00870 55 SNMTPADWLKLAKRINEALADDGYDGVVVTHGTD 88 (323)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCCEEEEecCCc
Confidence 3489999999999998765555554 45555543
No 231
>PF04536 TPM: TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase; InterPro: IPR007621 This is a family of uncharacterised proteins. They are found in both eukarya and eubacteria. In eubacteria the region is towards the N-terminal of the protein and is accompanied by an N-terminal signal sequence. The C-terminal of eubacterial proteins typically contains one or more putative transmembrane regions. In eukaryotes the region is not accompanied by a signal sequence.; PDB: 3PTJ_A 3PW9_A 3PVH_A 2KPT_A 2KW7_A.
Probab=22.19 E-value=1.2e+02 Score=21.99 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHHhhhCCCeeEEEEeeC
Q 026342 95 FRPHTVKELIRAFNDARDDSSVGVIILTGK 124 (240)
Q Consensus 95 l~~~~~~~L~~~l~~~~~d~~v~vvVltg~ 124 (240)
|+.+-..+|.+.++.++..-.+.++|++-.
T Consensus 2 Ls~~~~~~l~~~l~~~~~~t~~~i~Vvtv~ 31 (119)
T PF04536_consen 2 LSQEERERLNQALAKLEKKTGVQIVVVTVP 31 (119)
T ss_dssp S-HHHHHHHHHHHHHHHHHC--EEEEEEES
T ss_pred CCHHHHHHHHHHHHHHHHhhCCEEEEEEEc
Confidence 788899999999999999888888777753
No 232
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=22.17 E-value=2.4e+02 Score=22.88 Aligned_cols=38 Identities=16% Similarity=0.336 Sum_probs=27.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|. +.||......+.+.+.++.++ ...+|+++.
T Consensus 157 llllDEPt--~~LD~~~~~~~~~~l~~~~~~-~~tiiivtH 194 (214)
T cd03292 157 ILIADEPT--GNLDPDTTWEIMNLLKKINKA-GTTVVVATH 194 (214)
T ss_pred EEEEeCCC--CcCCHHHHHHHHHHHHHHHHc-CCEEEEEeC
Confidence 46678885 899999999999999888654 333444443
No 233
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.89 E-value=2.2e+02 Score=23.70 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=26.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|- +.+|......+.+.+.++..+....+|+++.
T Consensus 157 llllDEP~--~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH 195 (239)
T cd03296 157 VLLLDEPF--GALDAKVRKELRRWLRRLHDELHVTTVFVTH 195 (239)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 46678885 8899988888888888876543333444443
No 234
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=21.77 E-value=2.6e+02 Score=22.58 Aligned_cols=37 Identities=5% Similarity=0.190 Sum_probs=26.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|- +.+|.....++.+.+.++.+. .. .||++.
T Consensus 147 llllDEPt--~~LD~~~~~~l~~~l~~~~~~-~~-tii~~s 183 (205)
T cd03226 147 LLIFDEPT--SGLDYKNMERVGELIRELAAQ-GK-AVIVIT 183 (205)
T ss_pred EEEEeCCC--ccCCHHHHHHHHHHHHHHHHC-CC-EEEEEe
Confidence 46678885 889999999999988887543 32 344444
No 235
>PF06935 DUF1284: Protein of unknown function (DUF1284); InterPro: IPR009702 This family consists of several hypothetical bacterial and archaeal proteins of around 130 residues in length. The function of this family is unknown, although it is thought that they may be iron-sulphur binding proteins.
Probab=21.73 E-value=1.7e+02 Score=21.48 Aligned_cols=31 Identities=19% Similarity=0.426 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHHhhhCCCeeEEEEeeCC
Q 026342 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (240)
Q Consensus 95 l~~~~~~~L~~~l~~~~~d~~v~vvVltg~g 125 (240)
.++++++-|.++++.+.++++..+-|+.|..
T Consensus 2 YS~~Fv~Nm~~Iv~~l~~~~~~~I~iv~~~D 32 (103)
T PF06935_consen 2 YSPEFVENMKKIVERLRNDPGEPIEIVDGPD 32 (103)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEEEECcC
Confidence 5789999999999999888888888888864
No 236
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=21.72 E-value=2.2e+02 Score=24.20 Aligned_cols=40 Identities=8% Similarity=0.167 Sum_probs=29.6
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 82 ~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
-.+-||.|. +.||......+.+.+.++.......+|+++.
T Consensus 163 ~llllDEPt--~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH 202 (265)
T PRK10253 163 AIMLLDEPT--TWLDISHQIDLLELLSELNREKGYTLAAVLH 202 (265)
T ss_pred CEEEEeCcc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 346678885 8999999999999999886543444455444
No 237
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=21.60 E-value=2.3e+02 Score=23.46 Aligned_cols=40 Identities=13% Similarity=0.243 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeC
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~ 124 (240)
.+-||.|- +.+|.....++.+.+.++.+....-+|+++..
T Consensus 153 llllDEP~--~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 192 (236)
T TIGR03864 153 LLLLDEPT--VGLDPASRAAIVAHVRALCRDQGLSVLWATHL 192 (236)
T ss_pred EEEEcCCc--cCCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 46678885 89999999999999998864333334444443
No 238
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.53 E-value=2.8e+02 Score=21.23 Aligned_cols=37 Identities=11% Similarity=0.417 Sum_probs=27.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+.||.|. +.+|.+....+.+.+.++..+ . +.+++++
T Consensus 101 i~ilDEp~--~~lD~~~~~~l~~~l~~~~~~-~-~tii~~s 137 (157)
T cd00267 101 LLLLDEPT--SGLDPASRERLLELLRELAEE-G-RTVIIVT 137 (157)
T ss_pred EEEEeCCC--cCCCHHHHHHHHHHHHHHHHC-C-CEEEEEe
Confidence 46678885 889999999999999887655 3 3444444
No 239
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=21.48 E-value=2.7e+02 Score=22.09 Aligned_cols=37 Identities=14% Similarity=0.311 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|. +.+|.+..+++.+.+.++... . +.+|++.
T Consensus 125 llllDEP~--~~LD~~~~~~l~~~l~~~~~~-~-~tiii~s 161 (182)
T cd03215 125 VLILDEPT--RGVDVGAKAEIYRLIRELADA-G-KAVLLIS 161 (182)
T ss_pred EEEECCCC--cCCCHHHHHHHHHHHHHHHHC-C-CEEEEEe
Confidence 46678885 899999999999999988654 3 3445544
No 240
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=21.39 E-value=2.3e+02 Score=23.78 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=28.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|- +.||.....++.+.+.++..+....+|+++.
T Consensus 169 vlllDEP~--~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH 207 (253)
T TIGR02323 169 LVFMDEPT--GGLDVSVQARLLDLLRGLVRDLGLAVIIVTH 207 (253)
T ss_pred EEEEcCCC--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 46678884 8999999999999998876543444555554
No 241
>PRK11186 carboxy-terminal protease; Provisional
Probab=21.38 E-value=96 Score=30.87 Aligned_cols=102 Identities=18% Similarity=0.289 Sum_probs=53.0
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEE--eeCCCCCcccCCCccc-cccCC-ccch-hhhhhh
Q 026342 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL--TGKGTEAFCSGGDQAL-RTRDG-YADY-ENFGRL 152 (240)
Q Consensus 78 ~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVl--tg~g~~~FcaG~Dl~~-~~~~~-~~~~-~~~~~~ 152 (240)
.+.|++|.|+ .|...+..++.++++.+... .++.+|| ++.|+.....+.++.. +.... .... ...++.
T Consensus 352 ~~kIGYI~I~------sF~~~~~~d~~~~l~~l~~~-~v~gLIlDLR~NgGG~l~~a~~la~lFi~~g~vv~~~~~~g~~ 424 (667)
T PRK11186 352 GEKVGVLDIP------GFYVGLTDDVKKQLQKLEKQ-NVSGIIIDLRGNGGGALTEAVSLSGLFIPSGPVVQVRDNNGRV 424 (667)
T ss_pred CCcEEEEEec------ccccchHHHHHHHHHHHHHC-CCCEEEEEcCCCCCCcHHHHHHHHHHHhcCCceEEEecCCCce
Confidence 3568888884 46666788888888888754 5788887 5554322222222211 11111 0000 000000
Q ss_pred hHHHHHHHHHcCCCcEEEEECchhchhhHHHhhh
Q 026342 153 NVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186 (240)
Q Consensus 153 ~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~ 186 (240)
....-...-.....|++..||+....++=.++.+
T Consensus 425 ~~~~~~~~~~~~~gPlvVLVN~~SASASEIfA~a 458 (667)
T PRK11186 425 RVDSDTDGVVYYKGPLVVLVDRYSASASEIFAAA 458 (667)
T ss_pred eccccCCcccccCCCEEEEeCCCCccHHHHHHHH
Confidence 0000000112346799999999998776555543
No 242
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=21.32 E-value=2.4e+02 Score=23.80 Aligned_cols=38 Identities=18% Similarity=0.528 Sum_probs=30.2
Q ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeC
Q 026342 84 ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124 (240)
Q Consensus 84 Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~ 124 (240)
+-|+.|. .|||++++.|...++.++..+... -|++|-.
T Consensus 174 mLFDEPT--SALDPElVgEVLkv~~~LAeEgrT-Mv~VTHE 211 (256)
T COG4598 174 MLFDEPT--SALDPELVGEVLKVMQDLAEEGRT-MVVVTHE 211 (256)
T ss_pred EeecCCc--ccCCHHHHHHHHHHHHHHHHhCCe-EEEEeee
Confidence 5578886 899999999999999999887664 4555654
No 243
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=21.32 E-value=3.2e+02 Score=21.89 Aligned_cols=39 Identities=15% Similarity=0.104 Sum_probs=28.7
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 82 ~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
-.+-||.|. |.||......+.+.+.++.++ ...+|+++.
T Consensus 147 ~llllDEPt--~~LD~~~~~~l~~~l~~~~~~-~~tii~~sH 185 (198)
T TIGR01189 147 PLWILDEPT--TALDKAGVALLAGLLRAHLAR-GGIVLLTTH 185 (198)
T ss_pred CEEEEeCCC--cCCCHHHHHHHHHHHHHHHhC-CCEEEEEEc
Confidence 356788885 899999999999999987544 334444444
No 244
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=21.30 E-value=2.4e+02 Score=24.23 Aligned_cols=39 Identities=23% Similarity=0.481 Sum_probs=32.0
Q ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCC
Q 026342 84 ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125 (240)
Q Consensus 84 Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g 125 (240)
+-||.|. .|||++|+.|..+.+..+.++. ..-+|+|..-
T Consensus 158 mLFDEPT--SALDPElv~EVL~vm~~LA~eG-mTMivVTHEM 196 (240)
T COG1126 158 MLFDEPT--SALDPELVGEVLDVMKDLAEEG-MTMIIVTHEM 196 (240)
T ss_pred EeecCCc--ccCCHHHHHHHHHHHHHHHHcC-CeEEEEechh
Confidence 4567886 7999999999999999998775 5677777753
No 245
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.24 E-value=2.7e+02 Score=22.32 Aligned_cols=40 Identities=8% Similarity=0.287 Sum_probs=29.3
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeC
Q 026342 82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124 (240)
Q Consensus 82 ~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~ 124 (240)
-.+-+|.|. +.+|.+....+.+.+.++.+. ...+|+++..
T Consensus 128 ~vlllDEP~--~~LD~~~~~~l~~~l~~~~~~-~~tiiivtH~ 167 (192)
T cd03232 128 SILFLDEPT--SGLDSQAAYNIVRFLKKLADS-GQAILCTIHQ 167 (192)
T ss_pred cEEEEeCCC--cCCCHHHHHHHHHHHHHHHHc-CCEEEEEEcC
Confidence 356678885 899999999999999988654 4444555543
No 246
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=21.12 E-value=2.4e+02 Score=23.35 Aligned_cols=39 Identities=10% Similarity=0.333 Sum_probs=27.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|. +.||.+....+.+.+.++..+....+|+++.
T Consensus 150 lllLDEP~--~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH 188 (232)
T PRK10771 150 ILLLDEPF--SALDPALRQEMLTLVSQVCQERQLTLLMVSH 188 (232)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 46678885 8899999999999998876543333444443
No 247
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=21.07 E-value=2.9e+02 Score=22.24 Aligned_cols=39 Identities=8% Similarity=0.124 Sum_probs=27.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|. +.||......+.+.+.++..+....+++++.
T Consensus 92 lllLDEPt--s~LD~~~~~~l~~~l~~~~~~~~~tiiivsH 130 (177)
T cd03222 92 FYLFDEPS--AYLDIEQRLNAARAIRRLSEEGKKTALVVEH 130 (177)
T ss_pred EEEEECCc--ccCCHHHHHHHHHHHHHHHHcCCCEEEEEEC
Confidence 45578885 8999999999999998876543233444444
No 248
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=21.02 E-value=2.2e+02 Score=24.53 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=30.3
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 82 ~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
-.+-||.|. +.||......+.+.+.++..+....+|+++.
T Consensus 174 ~lllLDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tviiisH 213 (272)
T PRK13547 174 RYLLLDEPT--AALDLAHQHRLLDTVRRLARDWNLGVLAIVH 213 (272)
T ss_pred CEEEEcCcc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 456678885 8999999999999999987654444555554
No 249
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=21.01 E-value=1e+02 Score=27.60 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhhCCCeeEEEEeeCCC
Q 026342 101 KELIRAFNDARDDSSVGVIILTGKGT 126 (240)
Q Consensus 101 ~~L~~~l~~~~~d~~v~vvVltg~g~ 126 (240)
+++.++++.++.+++++-|+||| |+
T Consensus 128 ~~~~~~i~~i~~~~~i~~VvltG-GE 152 (321)
T TIGR03821 128 AQWKEALEYIAQHPEINEVILSG-GD 152 (321)
T ss_pred HHHHHHHHHHHhcCCCCEEEEeC-cc
Confidence 45666677777788999999999 63
No 250
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=20.96 E-value=2.3e+02 Score=24.23 Aligned_cols=39 Identities=8% Similarity=0.151 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|- +.||......+.+.++++.++....+|+++.
T Consensus 172 lllLDEPt--~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH 210 (268)
T PRK10419 172 LLILDEAV--SNLDLVLQAGVIRLLKKLQQQFGTACLFITH 210 (268)
T ss_pred EEEEeCCC--cccCHHHHHHHHHHHHHHHHHcCcEEEEEEC
Confidence 46678885 8999999999999998886543444555554
No 251
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.93 E-value=2.5e+02 Score=22.76 Aligned_cols=37 Identities=16% Similarity=0.300 Sum_probs=26.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|. +.+|......+.+.++++.++ .. .|+++.
T Consensus 149 ~lllDEP~--~~LD~~~~~~~~~~l~~~~~~-~~-tii~~s 185 (210)
T cd03269 149 LLILDEPF--SGLDPVNVELLKDVIRELARA-GK-TVILST 185 (210)
T ss_pred EEEEeCCC--cCCCHHHHHHHHHHHHHHHHC-CC-EEEEEC
Confidence 45678885 889999999998888887654 33 444443
No 252
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.89 E-value=2.4e+02 Score=24.28 Aligned_cols=40 Identities=15% Similarity=0.386 Sum_probs=29.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeC
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~ 124 (240)
.+-||.|. +.||.....+|.+.+.++.++....+|++|..
T Consensus 161 llllDEPt--~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~ 200 (277)
T PRK13642 161 IIILDEST--SMLDPTGRQEIMRVIHEIKEKYQLTVLSITHD 200 (277)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 46678885 89999999999999998876534455555554
No 253
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=20.72 E-value=2.8e+02 Score=22.39 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=27.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|. +.||.....++.+.+.++..+ ...+|+++-
T Consensus 146 llllDEPt--~~LD~~~~~~l~~~l~~~~~~-g~tiii~sH 183 (201)
T cd03231 146 LWILDEPT--TALDKAGVARFAEAMAGHCAR-GGMVVLTTH 183 (201)
T ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHHhC-CCEEEEEec
Confidence 56678885 899999999999999887654 333444443
No 254
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.57 E-value=2.5e+02 Score=24.18 Aligned_cols=40 Identities=13% Similarity=0.365 Sum_probs=30.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeC
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~ 124 (240)
.|-||.|- +.||.....+|.+.+.++..+....+|+++..
T Consensus 161 lllLDEPt--~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~ 200 (279)
T PRK13635 161 IIILDEAT--SMLDPRGRREVLETVRQLKEQKGITVLSITHD 200 (279)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 46688885 89999999999999998876545555665554
No 255
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.56 E-value=2.3e+02 Score=24.45 Aligned_cols=39 Identities=15% Similarity=0.434 Sum_probs=26.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|- +.||......+.+.+.++..+....+|+++.
T Consensus 171 lLlLDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH 209 (289)
T PRK13645 171 TLVLDEPT--GGLDPKGEEDFINLFERLNKEYKKRIIMVTH 209 (289)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 45677775 8888888888888888776543333444443
No 256
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.52 E-value=2.5e+02 Score=23.43 Aligned_cols=39 Identities=15% Similarity=0.323 Sum_probs=25.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|- +.||......+.+.+.++..+....+|+++.
T Consensus 152 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH 190 (241)
T PRK14250 152 VLLLDEPT--SALDPTSTEIIEELIVKLKNKMNLTVIWITH 190 (241)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 45567774 7888888888888888776532333444443
No 257
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.41 E-value=2.8e+02 Score=22.49 Aligned_cols=38 Identities=8% Similarity=0.149 Sum_probs=23.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEe
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVlt 122 (240)
.+-||.|. +.+|.+..+.+.+.++++.++....+|+++
T Consensus 139 llllDEPt--~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~ 176 (202)
T cd03233 139 VLCWDNST--RGLDSSTALEILKCIRTMADVLKTTTFVSL 176 (202)
T ss_pred EEEEcCCC--ccCCHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 45566664 677877777777777777554333334433
No 258
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=20.33 E-value=2.5e+02 Score=23.81 Aligned_cols=39 Identities=3% Similarity=0.060 Sum_probs=27.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
.+-||.|- +.||......+.+.+.++..+....+|+++.
T Consensus 136 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH 174 (246)
T cd03237 136 IYLLDEPS--AYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174 (246)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 45678885 8899999999998888876543433444443
No 259
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=20.27 E-value=2.5e+02 Score=22.95 Aligned_cols=38 Identities=11% Similarity=0.341 Sum_probs=27.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEe
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVlt 122 (240)
.+-||.|- +.+|.+...+|.+.++++..+....+|+++
T Consensus 162 illlDEP~--~~LD~~~~~~l~~~l~~~~~~~~~tii~~s 199 (220)
T TIGR02982 162 LVLADEPT--AALDSKSGRDVVELMQKLAREQGCTILIVT 199 (220)
T ss_pred EEEEeCCC--CcCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 46678885 789999999999999888654343344443
No 260
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=20.26 E-value=2.5e+02 Score=23.32 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=28.4
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 82 ~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
-.+-||.|. +.+|.+....+.+.+.++..+....+|+++.
T Consensus 150 ~llllDEP~--~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH 189 (237)
T TIGR00968 150 QVLLLDEPF--GALDAKVRKELRSWLRKLHDEVHVTTVFVTH 189 (237)
T ss_pred CEEEEcCCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 346678885 8999999999999999876542333444444
No 261
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.23 E-value=2.5e+02 Score=24.32 Aligned_cols=40 Identities=10% Similarity=0.403 Sum_probs=29.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeC
Q 026342 83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124 (240)
Q Consensus 83 ~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~ 124 (240)
.+.||.|- +.||.....+|.+.+.++..+....+|++|..
T Consensus 165 llllDEPt--~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 204 (287)
T PRK13637 165 ILILDEPT--AGLDPKGRDEILNKIKELHKEYNMTIILVSHS 204 (287)
T ss_pred EEEEECCc--cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 46678885 89999999999999998876544445555543
No 262
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.20 E-value=2.6e+02 Score=23.22 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=29.3
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee
Q 026342 82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123 (240)
Q Consensus 82 ~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg 123 (240)
-.+-||.|. +.+|....+.|.+.+.++..+....+|+++.
T Consensus 149 ~llllDEPt--~gLD~~~~~~l~~~l~~~~~~~~~tili~tH 188 (235)
T cd03299 149 KILLLDEPF--SALDVRTKEKLREELKKIRKEFGVTVLHVTH 188 (235)
T ss_pred CEEEECCCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 356678885 8999999999999999886643444455554
No 263
>KOG1389 consensus 3-oxoacyl CoA thiolase [Lipid transport and metabolism]
Probab=20.17 E-value=2.8e+02 Score=25.20 Aligned_cols=23 Identities=35% Similarity=0.283 Sum_probs=17.2
Q ss_pred hHhHHHhhhccccCccCCCCCCc
Q 026342 9 RRRMTAVANHLVPVISSDSNSGF 31 (240)
Q Consensus 9 ~~r~~~~~~~~~~~~~~~~~~~s 31 (240)
..|+..+-.||.|++++.....+
T Consensus 2 ~er~~~ll~hl~~~s~s~~~~a~ 24 (435)
T KOG1389|consen 2 MERQQVLLRHLRPSSSSASLSAS 24 (435)
T ss_pred chHHHHHHHhcCCcccccccccc
Confidence 46999999999998777444444
No 264
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=20.09 E-value=1.2e+02 Score=21.64 Aligned_cols=52 Identities=23% Similarity=0.310 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHH-HHHHHHcCCCcEEEEECchh
Q 026342 100 VKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD-LQVQIRRLPKPVIAMVAGYA 176 (240)
Q Consensus 100 ~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~-l~~~i~~~~kP~IAav~G~a 176 (240)
-+++.++|+++.+++++.+|+++-.- .. .+.+ +.....+...|+|..+-+.-
T Consensus 27 ~ee~~~~l~~l~~~~~~gIIii~e~~-------------~~------------~~~~~l~~~~~~~~~P~iv~IP~~~ 79 (95)
T PF01990_consen 27 PEEAEEALKELLKDEDVGIIIITEDL-------------AE------------KIRDELDEYREESSLPLIVEIPSKE 79 (95)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEHHH-------------HT------------THHHHHHHHHHTSSSSEEEEESTTC
T ss_pred HHHHHHHHHHHhcCCCccEEEeeHHH-------------HH------------HHHHHHHHHHhccCCceEEEcCCCC
Confidence 46778888888888899999988531 00 1112 22233567899999996653
Done!