BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026343
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JR1|A Chain A, Crystal Structure Of Putative Fructosamine-3-Kinase
(Yp_719053.1) From Haemophilus Somnus 129pt At 2.32 A
Resolution
pdb|3JR1|B Chain B, Crystal Structure Of Putative Fructosamine-3-Kinase
(Yp_719053.1) From Haemophilus Somnus 129pt At 2.32 A
Resolution
Length = 312
Score = 97.1 bits (240), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 108/207 (52%), Gaps = 12/207 (5%)
Query: 2 FEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFIEFGSSRGNQS---VFGKKLA 58
F EA L + +T +I P + +G G S++++E S+ QS +F +K+A
Sbjct: 75 FRAEADQLALLAKTNSINVPLVYGIGN-SQGHSFLLLE--ALNKSKNKQSSFTIFAEKIA 131
Query: 59 EMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQYGDSTIYQ 118
++H+ K +G D D +G Q N W ++W +F++E+R+G+QL++ ++ I+
Sbjct: 132 QLHQIQGPDK-YGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEK---GLIFG 187
Query: 119 RGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGM-S 177
+++ +A N +P +LHG+LW N + + + +PACY+G E + S
Sbjct: 188 NIDLIVQIVADTLSKHNPKPSILHGNLWIEN-CIQVDDKIFVCNPACYWGDRECDIAFSS 246
Query: 178 WCAGFGGSFYNSYFEVMPKQPGFEKRR 204
F +FY Y E+ P + G+ +R+
Sbjct: 247 LFEPFPTNFYQRYNEIYPLEEGYLERK 273
>pdb|3F7W|A Chain A, Crystal Structure Of Putative Fructosamine-3-Kinase
(Yp_290396.1) From Thermobifida Fusca Yx-Er1 At 1.85 A
Resolution
Length = 288
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 108/245 (44%), Gaps = 23/245 (9%)
Query: 1 MFEGEALGLGAMYETRTIRAPRPFKVGALPTGGSYIIMEFI-EFGSSRGNQSVFGKKLAE 59
+F EALGL + R+ +P P G + E++ E + FG +LA
Sbjct: 57 LFRAEALGLD--WLGRSFGSPVPQVAG---WDDRTLAXEWVDERPPTPEAAERFGHQLAA 111
Query: 60 MHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAEHRLGYQLKLALDQ----YGDST 115
H AG S FG D IG P N S W EFYAE R+ L+ A D+ GD
Sbjct: 112 XHLAGAES--FGATWDGYIGPLPXDNTPRSTWPEFYAEQRILPYLRRAADRGALTPGDVR 169
Query: 116 IYQRGHRLMKNLAPLFEGVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFG 175
+ ++ + +LA G P +HGDLW+GN+ +G V++DPA + GH EA+
Sbjct: 170 LVEKVLDALDHLA----GDPEPPARIHGDLWNGNVLWQDDGA-VVIDPAAHGGHREADLA 224
Query: 176 MSWCAGFGGSFY----NSYFEVMPKQPGFEKRRDXXXXXXXXXXXXXFGSGYRSSALSII 231
A FG + ++Y EV P G+ R FG+ YR++ +
Sbjct: 225 X--LALFGLPYLDRVRDAYNEVAPLAEGWRARIPLHQLHPLLVHVCLFGAAYRTTLVDTA 282
Query: 232 DDYLR 236
LR
Sbjct: 283 RAALR 287
>pdb|3ND1|A Chain A, Crystal Structure Of Precorrin-6a Synthase From
Rhodobacter Capsulatus
pdb|3ND1|B Chain B, Crystal Structure Of Precorrin-6a Synthase From
Rhodobacter Capsulatus
Length = 275
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 44 GSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVDNTIGSTPQINKWTSNWIEFYAE------ 97
G+ + + + +++ H ++K F + S P K +W + AE
Sbjct: 57 GADKSDLAGLRRQICAAHLTNPATKVIDFALPVRDASNPSYRKGVDDWHDAIAETWLSEI 116
Query: 98 --HRLGYQLKLALDQYGDSTIYQRGHRLMKNL 127
H G + ++AL +GD ++Y R+ + L
Sbjct: 117 TAHVPGLEGRVALLVWGDPSLYDSTLRIAERL 148
>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|B Chain B, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|C Chain C, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|D Chain D, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|F Chain F, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|E Chain E, Crystal Structure Of The Kinase Domain Of Mpp1P55
Length = 197
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 39 EFIEFGSSRGNQSVFGKKLAEMHKAGKSSKGFGFDVD 75
EF+EFGS +GN +FG K +H+ K +K D++
Sbjct: 84 EFLEFGSYQGN--MFGTKFETVHQIHKQNKIAILDIE 118
>pdb|3TZM|A Chain A, Tgf-Beta Receptor Type 1 In Complex With Sb431542
Length = 309
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 133 GVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEA 172
G +P + H DL S NI KNG I D H+ A
Sbjct: 128 GTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSA 167
>pdb|1PY5|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With
Inhibitor
Length = 326
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 133 GVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEA 172
G +P + H DL S NI KNG I D H+ A
Sbjct: 148 GTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSA 187
>pdb|2WOT|A Chain A, Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)-3-
Pyridyl)oxy)-N-(3,4,5-Trimethoxyphenyl)pyridin-2-Amine
pdb|2WOU|A Chain A, Alk5 In Complex With
4-((4-((2,6-Dimethyl-3-Pyridyl)oxy)-2-
Pyridyl)amino)benzenesulfonamide
Length = 306
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 133 GVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEA 172
G +P + H DL S NI KNG I D H+ A
Sbjct: 125 GTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSA 164
>pdb|1B6C|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|F Chain F, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|H Chain H, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1IAS|A Chain A, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|B Chain B, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|C Chain C, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|D Chain D, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|E Chain E, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|3FAA|A Chain A, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|B Chain B, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|C Chain C, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|D Chain D, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|E Chain E, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3KCF|A Chain A, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|B Chain B, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|C Chain C, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|D Chain D, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|E Chain E, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|2X7O|A Chain A, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|B Chain B, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|C Chain C, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|D Chain D, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|E Chain E, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
Length = 342
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 133 GVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEA 172
G +P + H DL S NI KNG I D H+ A
Sbjct: 161 GTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSA 200
>pdb|1VJY|A Chain A, Crystal Structure Of A Naphthyridine Inhibitor Of Human
Tgf- Beta Type I Receptor
pdb|3GXL|A Chain A, Alk-5 Kinase Complex With Gw857175
pdb|3HMM|A Chain A, Structure Of Alk5 + Gw855857
Length = 303
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 133 GVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEA 172
G +P + H DL S NI KNG I D H+ A
Sbjct: 122 GTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSA 161
>pdb|1RW8|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Atp
Site Inhibitor
Length = 301
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 133 GVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEA 172
G +P + H DL S NI KNG I D H+ A
Sbjct: 123 GTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSA 162
>pdb|3H9R|A Chain A, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
Length = 330
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 133 GVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEA 172
G +P + H DL S NI KNG+ I D H+++
Sbjct: 156 GTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQS 195
>pdb|3MTF|A Chain A, Crystal Structure Of The Acvr1 Kinase In Complex With A 2-
Aminopyridine Inhibitor
pdb|3MTF|B Chain B, Crystal Structure Of The Acvr1 Kinase In Complex With A 2-
Aminopyridine Inhibitor
pdb|3OOM|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With The Imidazo[1,2-B]pyridazine Inhibitor K00507
pdb|3Q4U|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
pdb|3Q4U|B Chain B, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
pdb|3Q4U|C Chain C, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
pdb|3Q4U|D Chain D, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
Length = 301
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 133 GVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEA 172
G +P + H DL S NI KNG+ I D H+++
Sbjct: 127 GTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQS 166
>pdb|4DYM|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With The Imidazo[1,2-B]pyridazine Inhibitor K00135
Length = 301
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 133 GVNVEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEA 172
G +P + H DL S NI KNG+ I D H+++
Sbjct: 127 GTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQS 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,793,646
Number of Sequences: 62578
Number of extensions: 333670
Number of successful extensions: 739
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 723
Number of HSP's gapped (non-prelim): 23
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)