BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026344
         (240 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O14197|YDQ4_SCHPO Uncharacterized transporter C5D6.04 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=SPAC5D6.04 PE=3 SV=1
          Length = 452

 Score = 37.0 bits (84), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 66/160 (41%), Gaps = 8/160 (5%)

Query: 15  LKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWF 74
           L+V+++   G VLA  +   L       +++L  Y F P L+   +   +  + LI L  
Sbjct: 24  LEVIVIALGGYVLA--KKGFLPRDAQKVISSLNVYFFTPCLVFEKVGNGLNLKMLIDLSL 81

Query: 75  MPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNS- 133
           +PV  ++       ++++L K+ R  P  +     C +  N  +L L +V ++       
Sbjct: 82  LPVFYVIISAASILISFLLAKLFRLTPRQRNFATACITFQNSNSLPLALVSSLATTVKDL 141

Query: 134 -----PFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVM 168
                P       +S G  Y  +   +G    W+Y Y ++
Sbjct: 142 LWDKIPDDTPDKVASRGIMYLLIFSQLGQALRWSYGYRIL 181


>sp|Q2KIV1|S22A9_BOVIN Solute carrier family 22 member 9 OS=Bos taurus GN=SLC22A9 PE=2
           SV=1
          Length = 552

 Score = 33.9 bits (76), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 5/54 (9%)

Query: 85  IGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDT 138
           IG+ALA +L+ +T   PHL  ++ G CS   +G L   +VP + E  N P  D+
Sbjct: 478 IGAALAPLLMILTVYSPHLPWIIYGVCSI--LGGL---VVPLLPETRNKPLPDS 526


>sp|P42432|NASA_BACSU Nitrate transporter OS=Bacillus subtilis (strain 168) GN=nasA PE=2
           SV=2
          Length = 401

 Score = 33.5 bits (75), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 100 PPHLQGLVIGCCSAGNMGNLLLIIV-PAVCEE 130
           PPHLQGL +G   AGN G L   +  P + E+
Sbjct: 131 PPHLQGLAMGIAGAGNSGTLFATLFGPRLAEQ 162


>sp|Q8TK19|ACKA_METAC Acetate kinase OS=Methanosarcina acetivorans (strain ATCC 35395 /
          DSM 2834 / JCM 12185 / C2A) GN=ackA PE=3 SV=1
          Length = 408

 Score = 32.3 bits (72), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 23/35 (65%)

Query: 8  EVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHS 42
          +VAL  ++K L  + LG++ ++D I+ +GH V H 
Sbjct: 61 KVALEEVVKALTDSELGVIKSMDEINAVGHRVVHG 95


>sp|A4XL40|ACKA_CALS8 Acetate kinase OS=Caldicellulosiruptor saccharolyticus (strain
          ATCC 43494 / DSM 8903) GN=ackA PE=3 SV=1
          Length = 399

 Score = 30.8 bits (68), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 22/34 (64%)

Query: 9  VALMPILKVLLVTALGLVLAIDRIDLLGHSVTHS 42
          VA+  +L++L    +G++ ++D ID +GH V H 
Sbjct: 61 VAIKLVLEMLTHPQMGIIKSMDEIDAIGHRVVHG 94


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.135    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,478,648
Number of Sequences: 539616
Number of extensions: 3173995
Number of successful extensions: 8294
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 8287
Number of HSP's gapped (non-prelim): 15
length of query: 240
length of database: 191,569,459
effective HSP length: 114
effective length of query: 126
effective length of database: 130,053,235
effective search space: 16386707610
effective search space used: 16386707610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)