Query 026344
Match_columns 240
No_of_seqs 188 out of 664
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:49:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026344.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026344hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2722 Predicted membrane pro 100.0 2.2E-42 4.7E-47 316.1 10.9 173 1-173 2-176 (408)
2 PF03547 Mem_trans: Membrane t 100.0 5.8E-28 1.3E-32 223.4 17.7 153 10-177 2-154 (385)
3 COG0679 Predicted permeases [G 99.8 2.1E-20 4.6E-25 170.6 14.5 153 7-175 2-154 (311)
4 TIGR00946 2a69 he Auxin Efflux 99.8 2.9E-20 6.2E-25 169.6 13.1 149 6-170 2-156 (321)
5 PRK09903 putative transporter 99.8 6.8E-19 1.5E-23 160.4 15.8 147 11-171 6-153 (314)
6 TIGR00841 bass bile acid trans 97.1 0.016 3.4E-07 52.6 14.3 131 14-162 140-274 (286)
7 COG0385 Predicted Na+-dependen 95.0 0.97 2.1E-05 42.0 14.2 72 50-123 201-274 (319)
8 PF05684 DUF819: Protein of un 94.9 0.51 1.1E-05 44.7 12.5 89 13-104 24-116 (378)
9 PF13593 DUF4137: SBF-like CPA 93.6 1.2 2.6E-05 41.0 11.8 108 15-127 165-279 (313)
10 TIGR00832 acr3 arsenical-resis 92.6 0.65 1.4E-05 43.1 8.5 106 15-123 182-297 (328)
11 PF12794 MscS_TM: Mechanosensi 91.1 9.2 0.0002 35.6 14.3 90 5-100 82-181 (340)
12 COG5505 Predicted integral mem 89.5 2.9 6.3E-05 39.0 9.2 80 15-99 32-116 (384)
13 TIGR00783 ccs citrate carrier 88.4 2.8 6.2E-05 39.4 8.6 89 17-109 207-301 (347)
14 PF05684 DUF819: Protein of un 88.0 13 0.00029 35.2 13.0 134 15-167 241-375 (378)
15 TIGR00807 malonate_madL malona 83.6 15 0.00033 29.5 9.3 81 15-99 38-118 (125)
16 KOG1650 Predicted K+/H+-antipo 80.6 11 0.00025 39.0 9.7 91 31-124 295-385 (769)
17 PF03812 KdgT: 2-keto-3-deoxyg 78.1 27 0.00059 32.5 10.3 107 12-126 169-276 (314)
18 PLN03159 cation/H(+) antiporte 76.6 41 0.00089 35.2 12.4 67 35-102 311-380 (832)
19 PF03817 MadL: Malonate transp 76.4 30 0.00066 27.8 8.8 80 15-98 38-117 (125)
20 PF03601 Cons_hypoth698: Conse 75.0 30 0.00065 31.9 9.9 135 15-171 27-172 (305)
21 PRK05274 2-keto-3-deoxyglucona 73.0 13 0.00029 34.6 7.1 104 15-126 174-278 (326)
22 TIGR00793 kdgT 2-keto-3-deoxyg 71.9 51 0.0011 30.7 10.4 106 13-126 170-276 (314)
23 TIGR03802 Asp_Ala_antiprt aspa 70.8 14 0.0003 36.9 7.1 113 10-127 8-140 (562)
24 PRK12460 2-keto-3-deoxyglucona 69.6 66 0.0014 30.0 10.7 103 15-126 167-270 (312)
25 COG5505 Predicted integral mem 65.8 33 0.00072 32.2 7.9 123 17-158 250-372 (384)
26 PRK04972 putative transporter; 64.6 70 0.0015 31.9 10.6 137 12-156 12-171 (558)
27 PF03390 2HCT: 2-hydroxycarbox 64.3 1.4E+02 0.0031 28.9 14.7 127 18-154 63-200 (414)
28 COG2978 AbgT Putative p-aminob 58.5 20 0.00043 35.3 5.3 62 19-82 96-157 (516)
29 COG3763 Uncharacterized protei 58.2 17 0.00038 26.5 3.7 26 71-96 2-27 (71)
30 CHL00204 ycf1 Ycf1; Provisiona 57.3 10 0.00022 42.5 3.5 52 41-97 125-176 (1832)
31 COG2855 Predicted membrane pro 57.0 1.1E+02 0.0025 28.7 9.8 100 61-175 80-185 (334)
32 PRK03818 putative transporter; 56.4 1.3E+02 0.0027 30.1 10.8 50 73-123 91-140 (552)
33 TIGR00753 undec_PP_bacA undeca 53.7 1.6E+02 0.0035 26.5 10.1 89 1-98 142-240 (255)
34 PRK01844 hypothetical protein; 53.5 23 0.0005 26.0 3.7 25 72-96 3-27 (72)
35 PF03616 Glt_symporter: Sodium 52.2 2.1E+02 0.0045 27.0 13.4 84 83-176 104-191 (368)
36 TIGR03802 Asp_Ala_antiprt aspa 51.3 1.9E+02 0.0041 28.9 11.1 86 35-123 441-528 (562)
37 COG2991 Uncharacterized protei 51.2 14 0.0003 27.2 2.3 29 4-34 1-29 (77)
38 PF03956 DUF340: Membrane prot 50.3 1.6E+02 0.0035 25.2 9.3 131 20-169 4-136 (191)
39 TIGR00831 a_cpa1 Na+/H+ antipo 49.1 96 0.0021 30.6 8.6 52 17-73 25-76 (525)
40 PF02673 BacA: Bacitracin resi 48.6 1.1E+02 0.0024 27.5 8.2 90 1-99 142-242 (259)
41 PF03390 2HCT: 2-hydroxycarbox 47.7 81 0.0018 30.5 7.5 88 31-119 286-381 (414)
42 PRK11339 abgT putative aminobe 47.4 26 0.00056 34.8 4.2 47 16-63 92-138 (508)
43 PRK11281 hypothetical protein; 47.2 3.3E+02 0.0072 29.8 12.7 50 46-99 625-674 (1113)
44 COG0679 Predicted permeases [G 43.6 2.5E+02 0.0055 25.5 10.3 89 16-107 169-259 (311)
45 PF06295 DUF1043: Protein of u 43.0 22 0.00048 28.5 2.6 22 79-100 2-23 (128)
46 TIGR00783 ccs citrate carrier 41.6 3.1E+02 0.0068 25.9 11.9 116 31-154 5-131 (347)
47 TIGR00840 b_cpa1 sodium/hydrog 41.4 2.4E+02 0.0052 28.2 10.1 35 44-79 65-100 (559)
48 PRK05326 potassium/proton anti 40.9 3.7E+02 0.008 26.6 12.1 54 17-73 247-300 (562)
49 TIGR00819 ydaH p-Aminobenzoyl- 40.8 3.6E+02 0.0077 26.9 11.0 46 17-63 89-134 (513)
50 PF06305 DUF1049: Protein of u 40.4 18 0.00039 25.1 1.5 24 73-96 18-41 (68)
51 PRK03562 glutathione-regulated 39.7 4.1E+02 0.0089 26.8 13.7 83 38-124 261-344 (621)
52 KOG3796 Ammonium transporter R 39.2 2E+02 0.0042 27.8 8.4 67 90-164 161-227 (442)
53 COG3493 CitS Na+/citrate sympo 38.9 3.7E+02 0.0081 26.1 14.2 99 25-126 87-194 (438)
54 TIGR01625 YidE_YbjL_dupl AspT/ 38.9 2.2E+02 0.0049 23.5 8.7 87 34-123 46-135 (154)
55 PRK04972 putative transporter; 38.4 2.5E+02 0.0054 28.1 9.7 105 16-123 416-523 (558)
56 TIGR00383 corA magnesium Mg(2+ 38.2 1.1E+02 0.0024 27.5 6.7 49 41-90 259-309 (318)
57 PRK10929 putative mechanosensi 37.7 3.9E+02 0.0085 29.3 11.5 65 31-99 587-653 (1109)
58 KOG2532 Permease of the major 37.7 1.8E+02 0.0038 28.3 8.4 78 98-191 156-235 (466)
59 TIGR00698 conserved hypothetic 37.4 3.5E+02 0.0076 25.3 10.2 124 16-160 33-168 (335)
60 TIGR01995 PTS-II-ABC-beta PTS 37.4 3.3E+02 0.0071 27.6 10.4 63 4-69 100-171 (610)
61 COG1455 CelB Phosphotransferas 37.0 1.5E+02 0.0033 28.8 7.6 52 4-57 72-123 (432)
62 PRK11677 hypothetical protein; 36.8 40 0.00087 27.5 3.2 21 78-98 5-25 (134)
63 PF12295 Symplekin_C: Sympleki 36.5 61 0.0013 27.6 4.4 76 20-108 77-154 (183)
64 PF03806 ABG_transport: AbgT p 36.2 1.7E+02 0.0037 29.1 7.9 48 16-64 82-129 (502)
65 KOG0569 Permease of the major 34.7 1.7E+02 0.0037 28.9 7.7 133 5-159 59-196 (485)
66 PRK12554 undecaprenyl pyrophos 34.6 3.6E+02 0.0077 24.6 9.3 54 1-63 148-208 (276)
67 PRK00523 hypothetical protein; 34.4 69 0.0015 23.5 3.7 24 73-96 5-28 (72)
68 PF05552 TM_helix: Conserved T 33.6 83 0.0018 21.0 3.9 32 66-97 8-39 (53)
69 COG4129 Predicted membrane pro 32.5 1.8E+02 0.004 27.2 7.2 37 80-116 13-49 (332)
70 PF13858 DUF4199: Protein of u 30.7 2.8E+02 0.0061 22.2 8.8 96 1-99 61-162 (163)
71 PRK09546 zntB zinc transporter 30.5 1.2E+02 0.0025 27.7 5.5 47 46-92 269-317 (324)
72 TIGR00832 acr3 arsenical-resis 30.5 3.6E+02 0.0077 24.9 8.8 48 57-104 53-105 (328)
73 PF03977 OAD_beta: Na+-transpo 30.4 3.5E+02 0.0076 25.7 8.6 32 15-48 213-247 (360)
74 PRK10669 putative cation:proto 29.9 5.4E+02 0.012 25.3 13.4 113 49-169 279-392 (558)
75 COG3105 Uncharacterized protei 29.7 81 0.0018 25.8 3.8 22 78-99 10-31 (138)
76 TIGR00844 c_cpa1 na(+)/h(+) an 29.3 7.1E+02 0.015 26.4 15.7 60 17-77 41-103 (810)
77 PF02932 Neur_chan_memb: Neuro 28.6 2.4E+02 0.0052 22.0 6.6 16 13-28 4-19 (237)
78 PF11241 DUF3043: Protein of u 28.4 2.3E+02 0.005 24.1 6.5 23 38-60 72-94 (170)
79 PRK05326 potassium/proton anti 28.3 3.9E+02 0.0084 26.4 9.1 57 16-74 32-88 (562)
80 KOG2533 Permease of the major 28.2 5.8E+02 0.013 25.1 10.7 19 13-33 319-337 (495)
81 PRK11404 putative PTS system 28.2 4.6E+02 0.01 25.8 9.5 56 3-60 127-196 (482)
82 PF12072 DUF3552: Domain of un 28.2 73 0.0016 27.3 3.6 22 76-97 3-24 (201)
83 KOG1608 Protein transporter of 28.0 4.7E+02 0.01 24.6 8.8 18 205-222 354-371 (374)
84 COG3493 CitS Na+/citrate sympo 27.6 4.6E+02 0.01 25.5 8.9 88 19-109 295-387 (438)
85 PF09971 DUF2206: Predicted me 27.5 2.5E+02 0.0054 26.6 7.3 62 61-123 171-240 (367)
86 COG0798 ACR3 Arsenite efflux p 27.3 5.4E+02 0.012 24.4 16.1 47 80-127 254-300 (342)
87 COG1380 Putative effector of m 26.8 1.9E+02 0.004 23.5 5.5 64 31-99 52-117 (128)
88 TIGR00844 c_cpa1 na(+)/h(+) an 26.0 6.5E+02 0.014 26.7 10.4 50 17-69 267-317 (810)
89 COG0395 UgpE ABC-type sugar tr 25.7 5.1E+02 0.011 23.5 9.1 45 6-54 79-123 (281)
90 PF07219 HemY_N: HemY protein 25.5 58 0.0013 24.9 2.3 34 71-104 15-48 (108)
91 TIGR00939 2a57 Equilibrative N 25.4 6.1E+02 0.013 24.3 10.2 16 141-156 170-185 (437)
92 COG0598 CorA Mg2+ and Co2+ tra 25.1 1.4E+02 0.003 27.4 5.0 52 41-93 263-316 (322)
93 KOG1965 Sodium/hydrogen exchan 25.1 1.8E+02 0.0038 29.5 6.0 50 14-63 41-117 (575)
94 PF11120 DUF2636: Protein of u 25.0 1.4E+02 0.003 21.3 3.8 17 81-97 12-28 (62)
95 PRK00281 undecaprenyl pyrophos 25.0 5.2E+02 0.011 23.4 9.1 24 40-63 183-206 (268)
96 PF11299 DUF3100: Protein of u 24.8 5.2E+02 0.011 23.3 9.4 78 14-91 21-106 (241)
97 PF07672 MFS_Mycoplasma: Mycop 24.7 56 0.0012 29.8 2.3 82 80-171 147-229 (267)
98 PF03672 UPF0154: Uncharacteri 24.3 78 0.0017 22.7 2.5 18 79-96 3-20 (64)
99 COG0798 ACR3 Arsenite efflux p 24.3 3.7E+02 0.0081 25.4 7.6 91 1-98 9-106 (342)
100 PRK15083 PTS system mannitol-s 24.1 6.4E+02 0.014 25.6 10.0 64 3-68 13-77 (639)
101 PRK11085 magnesium/nickel/coba 23.7 1.9E+02 0.0041 26.8 5.7 20 46-65 261-281 (316)
102 COG2194 Predicted membrane-ass 22.8 7.8E+02 0.017 24.8 10.1 14 50-63 93-106 (555)
103 PRK10747 putative protoheme IX 22.7 93 0.002 29.1 3.5 35 72-106 41-75 (398)
104 PRK10478 putative PTS system f 22.7 6.7E+02 0.014 23.8 10.0 99 5-106 13-132 (359)
105 PF09125 COX2-transmemb: Cytoc 22.3 1.8E+02 0.0038 18.6 3.5 21 8-28 16-36 (38)
106 COG2271 UhpC Sugar phosphate p 22.1 3.7E+02 0.008 26.4 7.4 67 15-104 28-94 (448)
107 TIGR01996 PTS-II-BC-sucr PTS s 22.0 5.5E+02 0.012 24.9 8.7 20 47-67 163-182 (461)
108 KOG4255 Uncharacterized conser 21.8 1.8E+02 0.0038 28.0 5.0 11 111-121 126-136 (439)
109 TIGR00366 conserved hypothetic 21.6 2.9E+02 0.0063 27.0 6.6 29 14-48 58-86 (438)
110 TIGR00540 hemY_coli hemY prote 21.6 73 0.0016 29.9 2.5 35 72-106 41-75 (409)
111 PF01544 CorA: CorA-like Mg2+ 21.4 50 0.0011 28.8 1.3 29 36-65 230-259 (292)
112 PRK03659 glutathione-regulated 21.4 8.3E+02 0.018 24.4 11.6 83 38-124 258-341 (601)
113 PF05145 AmoA: Putative ammoni 21.1 3.8E+02 0.0081 24.7 7.1 45 57-101 35-83 (318)
114 PRK14231 camphor resistance pr 20.9 2.7E+02 0.0059 22.3 5.4 28 143-171 93-120 (129)
115 COG1301 GltP Na+/H+-dicarboxyl 20.9 7.3E+02 0.016 24.0 9.2 60 41-100 40-103 (415)
116 COG3180 AbrB Putative ammonia 20.8 2.4E+02 0.0053 26.7 5.8 52 49-101 64-116 (352)
117 PF06899 WzyE: WzyE protein; 20.5 3.1E+02 0.0066 26.8 6.3 36 31-67 144-179 (448)
118 COG1294 AppB Cytochrome bd-typ 20.4 7.3E+02 0.016 23.4 13.3 32 30-61 190-221 (346)
119 COG3071 HemY Uncharacterized e 20.2 85 0.0018 30.2 2.6 37 72-108 41-77 (400)
No 1
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=2.2e-42 Score=316.13 Aligned_cols=173 Identities=48% Similarity=0.922 Sum_probs=168.2
Q ss_pred CchHHHHHHHH--HHHHHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhhHHHHHHhcccCChhHHhhhhhHHHH
Q 026344 1 MEILDLFEVAL--MPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVN 78 (240)
Q Consensus 1 m~~l~~f~~al--~~Vl~V~lii~vGy~la~~r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~~i~v~ 78 (240)
|++++.+-.|. +|+++++++..+||++|+++.|++++++||.+|++||++|+|||+|+++++++|.+++.+||++|++
T Consensus 2 mgf~s~~~vas~v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVn 81 (408)
T KOG2722|consen 2 MGFLSLLEVASGVMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVN 81 (408)
T ss_pred chHHHHHHHhcccccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHH
Confidence 78999988888 9999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccceeeeeccCCchhhHHHHHHhhhhcCCCCCCCcchhhchhhHHHHHHHHHhhH
Q 026344 79 ILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAI 158 (240)
Q Consensus 79 ~ll~~llg~~lg~ll~ri~r~p~~~rg~~i~a~~f~N~~~Lpl~ii~aL~~~~~~~FG~~~~~~~~g~aYi~l~~~~~~i 158 (240)
.++++++|.++||+++|++|+|++.|+++++||+|+|+|+||+.+++|+|++++.|||++|.|..+|+.|+++++.++.+
T Consensus 82 v~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~i 161 (408)
T KOG2722|consen 82 VGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQI 161 (408)
T ss_pred HHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccc
Q 026344 159 YIWTYVYYVMSLYLN 173 (240)
Q Consensus 159 ~~WT~G~~ll~~~~~ 173 (240)
++||++|+++.+++.
T Consensus 162 l~wty~Y~~~~~p~~ 176 (408)
T KOG2722|consen 162 LRWTYVYRMLLPPNL 176 (408)
T ss_pred EEEEEEeeeecCCch
Confidence 999999998877753
No 2
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.96 E-value=5.8e-28 Score=223.43 Aligned_cols=153 Identities=36% Similarity=0.626 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhhHHHHHHhcccCChhHHhhhhhHHHHHHHHHHHHHHH
Q 026344 10 ALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSAL 89 (240)
Q Consensus 10 al~~Vl~V~lii~vGy~la~~r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~~i~v~~ll~~llg~~l 89 (240)
++++++++++++++||+++ |+|+++++..+.+|++|+++++|||+|.+++++.+.+++.++|++++..++.+++++++
T Consensus 2 v~~~i~~i~~ii~~G~~~~--~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (385)
T PF03547_consen 2 VFSAILPIFLIILLGYLLG--RFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLL 79 (385)
T ss_pred cHHHHHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999 99999999999999999999999999999999988999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCccceeeeeccCCchhhHHHHHHhhhhcCCCCCCCcchhhchhhHHHHHHHHHhhHHHHHHHHHHHh
Q 026344 90 AWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMS 169 (240)
Q Consensus 90 g~ll~ri~r~p~~~rg~~i~a~~f~N~~~Lpl~ii~aL~~~~~~~FG~~~~~~~~g~aYi~l~~~~~~i~~WT~G~~ll~ 169 (240)
++++.|++|.++++++.+..+++++|++++|+|+++++ ||+ +|++|+++|.++++++.|++|+.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l-------~g~------~~~~~~~~~~~~~~i~~~~~~~~l~~ 146 (385)
T PF03547_consen 80 GFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQAL-------FGE------RGVAYAIIFDVVNNIILWSLGYFLLE 146 (385)
T ss_pred HHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHH-------hcc------hhhhhehHHHHhhHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999996 666 99999999999999999999999998
Q ss_pred hccccccc
Q 026344 170 LYLNKSVS 177 (240)
Q Consensus 170 ~~~~~~~~ 177 (240)
.++++.++
T Consensus 147 ~~~~~~~~ 154 (385)
T PF03547_consen 147 SRSEKEDK 154 (385)
T ss_pred cccccccc
Confidence 77665444
No 3
>COG0679 Predicted permeases [General function prediction only]
Probab=99.84 E-value=2.1e-20 Score=170.61 Aligned_cols=153 Identities=22% Similarity=0.306 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhhHHHHHHhcccCChhHHhhhhhHHHHHHHHHHHH
Q 026344 7 FEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIG 86 (240)
Q Consensus 7 f~~al~~Vl~V~lii~vGy~la~~r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~~i~v~~ll~~llg 86 (240)
+...+.+++|+++++++||+++ |.+.++++..+.+|++|+|+++|||+|.+++++ +.+...++..+.+..+.+.+.+
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~--r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~-~~~~~~~~~~~~~~~~~~~~~~ 78 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLK--RFGILDEEAARGLSRLVVYVALPALLFNSIATA-DLSGLADLGLIVASLVATLLAF 78 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--HhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhC-CcchhhhHHHHHHHHHHHHHHH
Confidence 4567889999999999999999 999999999999999999999999999999998 5555555555555445554555
Q ss_pred HHHHHHHHHHhcCCCCCccceeeeeccCCchhhHHHHHHhhhhcCCCCCCCcchhhchhhHHHHHHHHHhhHHHHHHHHH
Q 026344 87 SALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYY 166 (240)
Q Consensus 87 ~~lg~ll~ri~r~p~~~rg~~i~a~~f~N~~~Lpl~ii~aL~~~~~~~FG~~~~~~~~g~aYi~l~~~~~~i~~WT~G~~ 166 (240)
++..++..|..+.+++.++.+..++.|+|++++|+|+..+ .||+ +|++|+++|+..+++..|++|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~-------~~G~------~gl~~~~i~~~~~~~~~~~~g~~ 145 (311)
T COG0679 79 FLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVALS-------LFGE------KGLAYAVIFLIIGLFLMFTLGVI 145 (311)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHHH-------HcCc------chHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455556667777677888899999999999999877 5999 99999999999999999999999
Q ss_pred HHhhccccc
Q 026344 167 VMSLYLNKS 175 (240)
Q Consensus 167 ll~~~~~~~ 175 (240)
.+.+.+...
T Consensus 146 ~l~~~~~~~ 154 (311)
T COG0679 146 LLARSGGGT 154 (311)
T ss_pred HHHHhcCCc
Confidence 987765544
No 4
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.83 E-value=2.9e-20 Score=169.56 Aligned_cols=149 Identities=18% Similarity=0.184 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhhccCCCChhHHHHHHHHHHHHHhhHHHHHHhcccCChh-HHhhhhhHHHHHHHHH
Q 026344 6 LFEVALMPILKVLLVTALGLVL-AIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQ-SLISLWFMPVNILLSF 83 (240)
Q Consensus 6 ~f~~al~~Vl~V~lii~vGy~l-a~~r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~it~~-~l~~~~~i~v~~ll~~ 83 (240)
.++..++.++|+++++++||++ + |+|+++++..+.+|++++|+++||++|+++++. +.+ .....+...+.....+
T Consensus 2 ~~~~~~~~ilpv~~ii~lG~~~~~--r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (321)
T TIGR00946 2 ITYVILETVLPILVVILLGYILGK--RFGILDEEHASGINRFVINFALPLTIFHSISTT-LADILQKSQSPVVLFLWGAF 78 (321)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999 8 999999999999999999999999999999986 443 3333344444555666
Q ss_pred HHHHHHHHHHHH-HhcCCCCCccceeeeeccCCchhhHHHHHHhhhhcCCCCCCCcchhhchh---hHHHHHHHHHhhHH
Q 026344 84 LIGSALAWILIK-ITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYG---KAYASLSMAVGAIY 159 (240)
Q Consensus 84 llg~~lg~ll~r-i~r~p~~~rg~~i~a~~f~N~~~Lpl~ii~aL~~~~~~~FG~~~~~~~~g---~aYi~l~~~~~~i~ 159 (240)
++.++++|++.| .+|.+++.++.+..+++++|++++|+|+++++ ||+ +| +.|+..+.+.+++.
T Consensus 79 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~-------~G~------~~~~~~~~~~~~~~~~~~~ 145 (321)
T TIGR00946 79 SGSYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSL-------FGE------EGAKILIAALFIDTGAVLM 145 (321)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHHHHH-------hcc------cchhhhHHHHHHHhccchh
Confidence 778888999888 77888888999999999999999999999996 777 55 78999999999999
Q ss_pred HHHHHHHHHhh
Q 026344 160 IWTYVYYVMSL 170 (240)
Q Consensus 160 ~WT~G~~ll~~ 170 (240)
.|++|+.+...
T Consensus 146 ~~~~~~~~~~~ 156 (321)
T TIGR00946 146 TIALGLFLVSE 156 (321)
T ss_pred HHHHHHHHhcc
Confidence 99999877654
No 5
>PRK09903 putative transporter YfdV; Provisional
Probab=99.81 E-value=6.8e-19 Score=160.42 Aligned_cols=147 Identities=14% Similarity=0.197 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhhHHHHHHhcccCChhHHhhhhhHHHHHHHHHHHHHHHH
Q 026344 11 LMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALA 90 (240)
Q Consensus 11 l~~Vl~V~lii~vGy~la~~r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~~i~v~~ll~~llg~~lg 90 (240)
++.++|+++++++||+++ |+|+++++..+.+|++++|+++||++|.++.+. +.+++..-+...+...+.++++++++
T Consensus 6 ~~~ilpif~ii~lG~~~~--r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (314)
T PRK09903 6 IGDLLPIIVIMLLGYFSG--RRETFSEDQARAFNKLVLNYALPAALFVSITRA-NREMIFADTRLTLVSLVVIVGCFFFS 82 (314)
T ss_pred HHHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 456799999999999999 999999999999999999999999999999986 77766533445566777777888888
Q ss_pred HHHHH-HhcCCCCCccceeeeeccCCchhhHHHHHHhhhhcCCCCCCCcchhhchhhHHHHHHHHHhhHHHHHHHHHHHh
Q 026344 91 WILIK-ITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMS 169 (240)
Q Consensus 91 ~ll~r-i~r~p~~~rg~~i~a~~f~N~~~Lpl~ii~aL~~~~~~~FG~~~~~~~~g~aYi~l~~~~~~i~~WT~G~~ll~ 169 (240)
|++.| ..|.+++.++....+++++|++++|+|+++++ ||+ +.. .|+.|+.++. ..+++.|++|..++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~~-------~G~--~~~-~~~~~a~~~~-~~~~~~~~~g~~~~~ 151 (314)
T PRK09903 83 WFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPI-------YGD--SVS-TGLVVAIISI-IVNAITIPIGLYLLN 151 (314)
T ss_pred HHHHHHHhcCCcchhhHhhhhhcCCCcccccHHHHHHH-------cCc--hhh-hhhHHHHHHH-HHHHHHHHHHHHHHc
Confidence 88775 55666566666677889999999999999995 777 111 1565665544 578899999999887
Q ss_pred hc
Q 026344 170 LY 171 (240)
Q Consensus 170 ~~ 171 (240)
.+
T Consensus 152 ~~ 153 (314)
T PRK09903 152 PS 153 (314)
T ss_pred cc
Confidence 53
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=97.14 E-value=0.016 Score=52.57 Aligned_cols=131 Identities=12% Similarity=0.103 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHhhhccCCCChhHHHHHHH---HHHHHHhhHHHHHHhcccCChhHHhh-hhhHHHHHHHHHHHHHHH
Q 026344 14 ILKVLLVTALGLVLAIDRIDLLGHSVTHSLNN---LVFYVFNPALIGSNLAETITYQSLIS-LWFMPVNILLSFLIGSAL 89 (240)
Q Consensus 14 Vl~V~lii~vGy~la~~r~gil~~~~~~~Lsk---lVf~V~lPaLiF~~la~~it~~~l~~-~~~i~v~~ll~~llg~~l 89 (240)
...+++=.++|..++ |.. ++..+.+.+ +.. +.+=++++..++.+ .+.+.. .+.+.+..++..++++++
T Consensus 140 ~~~v~vPl~lG~~~r--~~~---p~~~~~~~~~~~~s~-~~l~liv~~~~~~~--~~~i~~~~~~~~~~~~ll~~~~~~~ 211 (286)
T TIGR00841 140 LVAVLIPVSIGMLVK--HKL---PQIAKIILKVGLISV-FLLSVIIAVVGGIN--VENLATIGPLLLLVGILLPLAGFLL 211 (286)
T ss_pred HHHHHHHHHHHHHHH--HHh---HHHHHHHHhCchHHH-HHHHHHHHHHHHhh--HHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 456667777888887 332 222222222 222 12223333333332 233332 334444556777899999
Q ss_pred HHHHHHHhcCCCCCccceeeeeccCCchhhHHHHHHhhhhcCCCCCCCcchhhchhhHHHHHHHHHhhHHHHH
Q 026344 90 AWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWT 162 (240)
Q Consensus 90 g~ll~ri~r~p~~~rg~~i~a~~f~N~~~Lpl~ii~aL~~~~~~~FG~~~~~~~~g~aYi~l~~~~~~i~~WT 162 (240)
||+++|.+|.+++.+......++..|++ +++++..+ -|++ +...-+..|...+++.+.++.+-
T Consensus 212 g~~~a~~~~l~~~~~~t~~~~~g~qN~~-lal~la~~-------~f~~--~~a~~~~~~~v~~~~~~~~~a~~ 274 (286)
T TIGR00841 212 GYLLAKLAGLPWARCRTISIEVGMQNSQ-LCSTIAQL-------SFSP--EVAVPSAIFPLIYALFQLAFALL 274 (286)
T ss_pred HHHHHHHhCCCHhhheeeeeeeecccHH-HHHHHHHH-------hcCh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887777777788999998 88887666 3653 22233445666666666665543
No 7
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=94.99 E-value=0.97 Score=42.02 Aligned_cols=72 Identities=13% Similarity=0.056 Sum_probs=48.1
Q ss_pred HHhhHHHHHHhcccCChhHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccceeeeeccCCch-hhHHHH
Q 026344 50 VFNPALIGSNLAETITYQSLISLW-FMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMG-NLLLII 123 (240)
Q Consensus 50 V~lPaLiF~~la~~it~~~l~~~~-~i~v~~ll~~llg~~lg~ll~ri~r~p~~~rg~~i~a~~f~N~~-~Lpl~i 123 (240)
..+=+.++...+.+ ..++.... .+.+..++..++++.+||..+|.++.++..+..+..|.+-.|.+ ..|++.
T Consensus 201 ~~illIv~~~~s~~--~~~~~~~~~~v~~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~lg~alA~ 274 (319)
T COG0385 201 LSILLIVYAAFSAA--VENGIWSGLLIFVAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLGLGAALAA 274 (319)
T ss_pred HHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHHHHHHHHH
Confidence 34444444444443 33333322 34445577788999999999999999999998888888888875 444443
No 8
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=94.91 E-value=0.51 Score=44.74 Aligned_cols=89 Identities=17% Similarity=0.231 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhhHHHHHHhcccCChhHHhhhhhHHHH----HHHHHHHHHH
Q 026344 13 PILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVN----ILLSFLIGSA 88 (240)
Q Consensus 13 ~Vl~V~lii~vGy~la~~r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~~i~v~----~ll~~llg~~ 88 (240)
-+-++++++.+|.+++ ..|+++.+....+-..+....+|..++--+.+. |+.++.....=++. +.+.+++|..
T Consensus 24 ~l~~~vl~~~~~~~ls--nlgli~~p~~s~~y~~v~~~~vPlai~LlLl~~-Dlr~i~~~g~~~l~~F~~~~~g~viG~~ 100 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLS--NLGLIDSPASSPVYDFVWTYLVPLAIPLLLLSA-DLRRILRLGGRLLLAFLIGAVGTVIGAV 100 (378)
T ss_pred hcCHHHHHHHHHHHHH--HCCCcCCCCcchHHHHHHHHHHHHHHHHHHHHc-cHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4456778888999999 999996666677889999999999999988887 88888876443333 3455566666
Q ss_pred HHHHHHHHhcCCCCCc
Q 026344 89 LAWILIKITRTPPHLQ 104 (240)
Q Consensus 89 lg~ll~ri~r~p~~~r 104 (240)
+++.+.+..-.|..++
T Consensus 101 va~~l~~~~l~~~~wk 116 (378)
T PF05684_consen 101 VAFLLFGGFLGPEGWK 116 (378)
T ss_pred HHHHHHhhcccchHHH
Confidence 6665555432343333
No 9
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=93.60 E-value=1.2 Score=41.00 Aligned_cols=108 Identities=19% Similarity=0.193 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHhhhccCCCChhH--HHHHHHHHHHHHhhHHHHHHhcccCChh---HH--hhhhhHHHHHHHHHHHHH
Q 026344 15 LKVLLVTALGLVLAIDRIDLLGHSV--THSLNNLVFYVFNPALIGSNLAETITYQ---SL--ISLWFMPVNILLSFLIGS 87 (240)
Q Consensus 15 l~V~lii~vGy~la~~r~gil~~~~--~~~LsklVf~V~lPaLiF~~la~~it~~---~l--~~~~~i~v~~ll~~llg~ 87 (240)
+.+++=..+|.+++ |. +++-. .+..-+.+-...+-.+++.+...++..+ ++ ..+..+....+....+++
T Consensus 165 ~~vllP~~~Gq~~r--~~--~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 240 (313)
T PF13593_consen 165 LTVLLPLVLGQLLR--RW--VPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVL 240 (313)
T ss_pred HHHHHHHHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHH
Confidence 45555566677766 22 22221 1334444566666777777766653222 11 122223333455566777
Q ss_pred HHHHHHHHHhcCCCCCccceeeeeccCCchhhHHHHHHhh
Q 026344 88 ALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAV 127 (240)
Q Consensus 88 ~lg~ll~ri~r~p~~~rg~~i~a~~f~N~~~Lpl~ii~aL 127 (240)
.++|..+|.++.+++.+-.+.. |+-..+..+|+|++..+
T Consensus 241 ~~~~~~~r~~~~~~~d~iA~~F-~gs~Ksl~~gvpl~~~l 279 (313)
T PF13593_consen 241 VLGWLAARLLGFSRPDRIAVLF-CGSQKSLALGVPLASIL 279 (313)
T ss_pred HHHHHHHhhcCCChhhEEEEEE-EcCcCcchhHHHHHHHH
Confidence 8889999999988887766554 55588888899988775
No 10
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=92.62 E-value=0.65 Score=43.07 Aligned_cols=106 Identities=13% Similarity=0.102 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHhhhcc-----CCCChhHHHHHHHHHHHHHhhHHHHHHhcccCChhHHhhh----hhHHHHHHHHHHH
Q 026344 15 LKVLLVTALGLVLAIDRI-----DLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISL----WFMPVNILLSFLI 85 (240)
Q Consensus 15 l~V~lii~vGy~la~~r~-----gil~~~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~----~~i~v~~ll~~ll 85 (240)
.-+++=..+|.+++.... ++..+...+.++++.. +++=..++...+.+ .+.+.+. +.+....++..++
T Consensus 182 ~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~-l~l~~iv~~~~~~~--~~~i~~~~~~i~~~~~~v~l~~~~ 258 (328)
T TIGR00832 182 IYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSL-IALLFTIVLLFAFQ--GETIIELPLDIALIAIPLLIYFYI 258 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHH-HHHHHHHHHHHHHH--HHHHHhChHHHHHHHHHHHHHHHH
Confidence 334445566776663111 1222223333444333 33334444554444 3334333 2222234577889
Q ss_pred HHHHHHHHHHHhcCCCCCccceeeeeccCCch-hhHHHH
Q 026344 86 GSALAWILIKITRTPPHLQGLVIGCCSAGNMG-NLLLII 123 (240)
Q Consensus 86 g~~lg~ll~ri~r~p~~~rg~~i~a~~f~N~~-~Lpl~i 123 (240)
++.+|++++|.+|.+++.+..+..+++-.|.+ .++++.
T Consensus 259 ~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~ 297 (328)
T TIGR00832 259 MFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVAI 297 (328)
T ss_pred HHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHHH
Confidence 99999999999999999888888788878864 444444
No 11
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=91.07 E-value=9.2 Score=35.63 Aligned_cols=90 Identities=19% Similarity=0.136 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhhccCCCChh------HH---HHHHHHHHHHHhhHHHHHHhcccCChhHHhhhhh
Q 026344 5 DLFEVALMPILKVLLVTALG-LVLAIDRIDLLGHS------VT---HSLNNLVFYVFNPALIGSNLAETITYQSLISLWF 74 (240)
Q Consensus 5 ~~f~~al~~Vl~V~lii~vG-y~la~~r~gil~~~------~~---~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~~ 74 (240)
..+..++..+.....+...- .+++ +.|+...+ .. +.--+-...+..|.++...++...+.+...+.
T Consensus 82 ~~l~~~l~~~a~~~~~~~~~~~l~r--p~Gl~~~HF~w~~~~~~~~r~~l~~~~~~~~pl~~~~~~~~~~~~~~~~d~-- 157 (340)
T PF12794_consen 82 VALGAALLAMALFWLVFEFFRRLLR--PNGLAERHFGWPKERVQRLRRQLRWLIWVLVPLLFISIFAENLPDGLARDV-- 157 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC--CCCeEeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhh--
Confidence 34555555554444444333 3333 44544332 22 22334455688999999999987566555542
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Q 026344 75 MPVNILLSFLIGSALAWILIKITRTP 100 (240)
Q Consensus 75 i~v~~ll~~llg~~lg~ll~ri~r~p 100 (240)
+.-++.++....++++..++++..
T Consensus 158 --LGrl~~ii~~~~l~~~~~~l~~~~ 181 (340)
T PF12794_consen 158 --LGRLAFIILLLLLAVFLWRLLRPG 181 (340)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHccc
Confidence 222344455566677777777654
No 12
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=89.46 E-value=2.9 Score=39.00 Aligned_cols=80 Identities=18% Similarity=0.229 Sum_probs=55.4
Q ss_pred HHHHHHHHHH-HHHhhhccCCCChhHHHHHHHHHHHHHhhHHHHHHhcccCChhHHhhhhhH----HHHHHHHHHHHHHH
Q 026344 15 LKVLLVTALG-LVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFM----PVNILLSFLIGSAL 89 (240)
Q Consensus 15 l~V~lii~vG-y~la~~r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~~i----~v~~ll~~llg~~l 89 (240)
+|-.+++-+| .+.. ..|+++ .......-|-|-.+|++++.-+.+- +..++.....= .+......++|+++
T Consensus 32 Vpa~v~iy~gamff~--t~Glfs--~~S~~y~~v~n~llpamI~lmLlqc-d~Rki~Klg~rll~ifli~sv~~vlGfIl 106 (384)
T COG5505 32 VPAAVIIYAGAMFFT--TVGLFS--VESPVYDTVWNYLLPAMIPLMLLQC-DVRKIFKLGRRLLFIFLISSVGTVLGFIL 106 (384)
T ss_pred hhHHHHHHHHHHHHh--hccccc--ccCcHHHHHHHHHHHHHHHHHHHHc-cHHHHHhhcchhhHHHHHHHHHHHHHHHH
Confidence 3444455555 3445 889995 6677888899999999999999886 88888876433 33345566677777
Q ss_pred HHHHHHHhcC
Q 026344 90 AWILIKITRT 99 (240)
Q Consensus 90 g~ll~ri~r~ 99 (240)
++.+.+-+..
T Consensus 107 ~yp~~ksf~g 116 (384)
T COG5505 107 AYPLLKSFIG 116 (384)
T ss_pred HHHHHhhhcc
Confidence 7766665443
No 13
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=88.39 E-value=2.8 Score=39.42 Aligned_cols=89 Identities=11% Similarity=0.075 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhhhccCCCChhHHH---HHHHHHHHHHhhHHHH-HHhcccCChhHHhhhh--hHHHHHHHHHHHHHHHH
Q 026344 17 VLLVTALGLVLAIDRIDLLGHSVTH---SLNNLVFYVFNPALIG-SNLAETITYQSLISLW--FMPVNILLSFLIGSALA 90 (240)
Q Consensus 17 V~lii~vGy~la~~r~gil~~~~~~---~LsklVf~V~lPaLiF-~~la~~it~~~l~~~~--~i~v~~ll~~llg~~lg 90 (240)
...++.+|.++. ..|+++++... ...|++.+.+++.+++ ..++.. +++++.+.. ...+..++..+-..+.+
T Consensus 207 ~v~mII~~vi~k--~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t-~l~~L~~a~t~~~vviiv~~Vlg~ii~s 283 (347)
T TIGR00783 207 YAFMILIAAALK--AFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYI-DLDDLVAALSWQFVVICLSVVVAMILGG 283 (347)
T ss_pred HHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccC-CHHHHHHHhchhHhhhHHHHHHHHHHHH
Confidence 446677788888 99999998765 4555666667777666 456555 899998854 22223333334445556
Q ss_pred HHHHHHhcCCCCCccceee
Q 026344 91 WILIKITRTPPHLQGLVIG 109 (240)
Q Consensus 91 ~ll~ri~r~p~~~rg~~i~ 109 (240)
+++.|+++.-+- ...+++
T Consensus 284 ~lvGKllG~YPi-E~aIta 301 (347)
T TIGR00783 284 AFLGKLMGMYPV-ESAITA 301 (347)
T ss_pred HHHHHHhCCChH-HHHHHH
Confidence 788888876333 344443
No 14
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=87.96 E-value=13 Score=35.22 Aligned_cols=134 Identities=18% Similarity=0.147 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHhhhccCCCCh-hHHHHHHHHHHHHHhhHHHHHHhcccCChhHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 026344 15 LKVLLVTALGLVLAIDRIDLLGH-SVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWIL 93 (240)
Q Consensus 15 l~V~lii~vGy~la~~r~gil~~-~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~~i~v~~ll~~llg~~lg~ll 93 (240)
..++.+..+|...+ ..++... .....+..+..|+| |..+....+..++.+-..+.++.++.+.+-.++-+++
T Consensus 241 ~~il~~tt~~l~~~--~~~~~~~l~g~~~lg~~lly~f-----fa~IGa~a~i~~l~~ap~~~l~~~i~l~iH~~l~l~~ 313 (378)
T PF05684_consen 241 WLILTVTTLGLATS--FPPFRKLLRGASELGTFLLYLF-----FAVIGASADISELLDAPSLFLFGFIILAIHLLLMLIL 313 (378)
T ss_pred HHHHHHHHHHHHHh--ccchhhcCCchHHHHHHHHHHH-----HHHHccccCHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777766 3333333 45567777777654 6677777789999884444555666677777777888
Q ss_pred HHHhcCCCCCccceeeeeccCCchhhHHHHHHhhhhcCCCCCCCcchhhchhhHHHHHHHHHhhHHHHHHHHHH
Q 026344 94 IKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYV 167 (240)
Q Consensus 94 ~ri~r~p~~~rg~~i~a~~f~N~~~Lpl~ii~aL~~~~~~~FG~~~~~~~~g~aYi~l~~~~~~i~~WT~G~~l 167 (240)
.|++|.|.. .+..++..|.+.-.-+-+ ++.. +|+ .-..-|+....+.++++|.+-+.+|+.+
T Consensus 314 ~kl~k~~l~----~~~vAS~AnIGGpaTA~a--~A~a----~~~--~Lv~pgvL~gvlGyaiGty~G~~va~~l 375 (378)
T PF05684_consen 314 GKLFKIDLF----ELLVASNANIGGPATAPA--VAAA----KGP--SLVPPGVLMGVLGYAIGTYLGLAVAQLL 375 (378)
T ss_pred HHHHCCCHH----HHHHHhhcccCCcchHHH--HHHh----cCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998743 223467777776665543 3332 332 3344677778888888888888777654
No 15
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=83.62 E-value=15 Score=29.51 Aligned_cols=81 Identities=9% Similarity=0.111 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhhHHHHHHhcccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 026344 15 LKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWILI 94 (240)
Q Consensus 15 l~V~lii~vGy~la~~r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~~i~v~~ll~~llg~~lg~ll~ 94 (240)
+-+++++.+..++. |+|++++++.+.+.--. ..-.|-.+-..=.++ -...+..-+...+..+.+.++++++--++.
T Consensus 38 iAMlLLi~~~~~l~--k~G~l~~~te~Gi~FW~-aMYIPIVVAMAA~QN-Vv~Al~gG~~Allagi~av~~~~~~i~~l~ 113 (125)
T TIGR00807 38 IAMILLIISKELLA--KRGHLPQVTQFGVGFWS-AMYIPIVVAMAAGQN-VVAALSGGMLALLASVAALIVTVLVIRWIS 113 (125)
T ss_pred HHHHHHHHHHHHHH--HcCCCChhHHhHHHHHH-ccHhHHHHHHhhhch-hHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 45678888899999 99999999998875322 244565554444444 244455555555566677777777666777
Q ss_pred HHhcC
Q 026344 95 KITRT 99 (240)
Q Consensus 95 ri~r~ 99 (240)
|+-+.
T Consensus 114 r~g~~ 118 (125)
T TIGR00807 114 KSSYG 118 (125)
T ss_pred HhCCC
Confidence 66543
No 16
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=80.57 E-value=11 Score=39.00 Aligned_cols=91 Identities=14% Similarity=0.038 Sum_probs=64.3
Q ss_pred ccCCCChhHHHHHHHHHHHHHhhHHHHHHhcccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccceeee
Q 026344 31 RIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGC 110 (240)
Q Consensus 31 r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~~i~v~~ll~~llg~~lg~ll~ri~r~p~~~rg~~i~a 110 (240)
|.+-++..-...+..+++.+++|+.+...-.+. +...+..++.......+..+.-++.....+..+|+|. |..+..+
T Consensus 295 ~~~p~g~~L~ekle~~~~~~llPl~~~~~G~k~-di~~i~~~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~--~~~l~l~ 371 (769)
T KOG1650|consen 295 HGPPLGSALIEKLEDLVSGLLLPLYFAISGLKT-DISRINKWGALIRTILIFGAVKLLSTLGTSLYCKLPL--RDSLALG 371 (769)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhhccce-eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch--hHHHHHH
Confidence 555566688889999999999999998888777 7887777555555556666666666667777888874 4555545
Q ss_pred eccCCchhhHHHHH
Q 026344 111 CSAGNMGNLLLIIV 124 (240)
Q Consensus 111 ~~f~N~~~Lpl~ii 124 (240)
...++-|.+-+.+.
T Consensus 372 ~lm~~kgl~el~~~ 385 (769)
T KOG1650|consen 372 LLMSTKGLVELIVL 385 (769)
T ss_pred HHHHhhhHHHHHHH
Confidence 55555565555554
No 17
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=78.12 E-value=27 Score=32.50 Aligned_cols=107 Identities=17% Similarity=0.165 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhhHHHHHHhcccCChhHHhhhhhHHH-HHHHHHHHHHHHH
Q 026344 12 MPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPV-NILLSFLIGSALA 90 (240)
Q Consensus 12 ~~Vl~V~lii~vGy~la~~r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~~i~v-~~ll~~llg~~lg 90 (240)
++.+-.++=+.+|.++. -+|++.|+.+.+-+- +.+|.+-| .+...++++++.+-..--+ ..+++++++....
T Consensus 169 ~~lv~~llP~iiG~iLG-----NLD~~~r~fl~~~~~-~lIPF~~f-~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~ 241 (314)
T PF03812_consen 169 MSLVAALLPIIIGMILG-----NLDPDFRKFLAPGVP-ILIPFFGF-ALGAGINLSNIIKAGLSGILLGVIVVVVTGIPL 241 (314)
T ss_pred HHHHHHHHHHHHHHHHh-----cCCHHHHHHHhcCCC-eeeehhhh-hhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHH
Confidence 34455556667898888 799999998887654 66777666 4667779999888654433 3455566666667
Q ss_pred HHHHHHhcCCCCCccceeeeeccCCchhhHHHHHHh
Q 026344 91 WILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPA 126 (240)
Q Consensus 91 ~ll~ri~r~p~~~rg~~i~a~~f~N~~~Lpl~ii~a 126 (240)
++.-|.+...+..-|. -.++..+|...-|-.+.++
T Consensus 242 ~~~dr~i~~~~g~aG~-A~sstAGnavatPaaiA~~ 276 (314)
T PF03812_consen 242 YLADRLILKGNGVAGA-AISSTAGNAVATPAAIAAA 276 (314)
T ss_pred HHHHHHHcCCCCceee-hHHhhhhhhhhhhHHHHHh
Confidence 7777775433333333 3357779999999999765
No 18
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=76.61 E-value=41 Score=35.23 Aligned_cols=67 Identities=12% Similarity=0.079 Sum_probs=39.1
Q ss_pred CChhHHHHHHHHHHHHHhhHHHHHHhcccCChhHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 026344 35 LGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLW---FMPVNILLSFLIGSALAWILIKITRTPPH 102 (240)
Q Consensus 35 l~~~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~---~i~v~~ll~~llg~~lg~ll~ri~r~p~~ 102 (240)
+..+....+..++..+|+|......= -.+++..+.+.+ .+.+..++.++.=++.+++.++.++.|.+
T Consensus 311 ~~~~l~ekle~~~~~lflPlFFv~vG-l~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~ 380 (832)
T PLN03159 311 LGVTLIEKLEDFVSGLLLPLFFAISG-LKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFR 380 (832)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh-heeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 33455667888888999998766654 444787776532 22222222222333455667777777644
No 19
>PF03817 MadL: Malonate transporter MadL subunit; InterPro: IPR004690 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=76.42 E-value=30 Score=27.85 Aligned_cols=80 Identities=15% Similarity=0.142 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhhHHHHHHhcccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 026344 15 LKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWILI 94 (240)
Q Consensus 15 l~V~lii~vGy~la~~r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~~i~v~~ll~~llg~~lg~ll~ 94 (240)
+-+++++.+..++. |+|++++++.+.+.--. ..-.|-.+-.+=.++ -...+..-+...+..+...++++++--++.
T Consensus 38 iAMlLLI~~~~~l~--k~g~l~~~te~Gi~FW~-amYIPIVVAMAA~QN-Vv~Al~gG~~Allagi~av~~~~~~ip~ls 113 (125)
T PF03817_consen 38 IAMLLLIFARLWLQ--KKGLLSKPTEQGIEFWS-AMYIPIVVAMAAQQN-VVAALSGGPVALLAGIGAVAVCFLLIPLLS 113 (125)
T ss_pred HHHHHHHHHHHHHH--HcCCCChHHHhHHHHHH-ccHHHHHHHHhhhhh-hHHhhcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 45678888899999 99999999999875332 244565554444444 233344434444445566666666555666
Q ss_pred HHhc
Q 026344 95 KITR 98 (240)
Q Consensus 95 ri~r 98 (240)
|+-+
T Consensus 114 r~g~ 117 (125)
T PF03817_consen 114 RIGR 117 (125)
T ss_pred hcCC
Confidence 5543
No 20
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=75.02 E-value=30 Score=31.89 Aligned_cols=135 Identities=14% Similarity=0.184 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHhhhc-cCCCChhHHHHHH---HHHHHHHhhHHHHHHhcccCChhHHhhhhh-HHHHHHHHHHHHHHH
Q 026344 15 LKVLLVTALGLVLAIDR-IDLLGHSVTHSLN---NLVFYVFNPALIGSNLAETITYQSLISLWF-MPVNILLSFLIGSAL 89 (240)
Q Consensus 15 l~V~lii~vGy~la~~r-~gil~~~~~~~Ls---klVf~V~lPaLiF~~la~~it~~~l~~~~~-i~v~~ll~~llg~~l 89 (240)
-.+++-+.+|.+++ . .--.++...+.+. |...++..= -+.-+++.+++.+.++ ..+...+...+.+.+
T Consensus 27 ~~~~~AillG~~i~--n~~~~~~~~~~~Gi~~~~k~~Lr~gIV-----LlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~ 99 (305)
T PF03601_consen 27 GALLIAILLGMLIG--NLFFGLPARFKPGIKFSSKKLLRLGIV-----LLGFRLSFSDILALGWKGLLIIIIVVILTFLL 99 (305)
T ss_pred cHHHHHHHHHHHHh--hhccCCcHHHHhHHHHHHHHHHHHHHH-----HHCccccHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 34456667788777 5 2333444434332 344443322 2345678999999877 344556777777888
Q ss_pred HHHHH-HHhcCCCCCccceeeeeccCCchhhHHHHHHhhhhcC-----CCCCCCcchhhchhhHHHHHHHHHhhHHHHHH
Q 026344 90 AWILI-KITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEES-----NSPFGDTSVCSSYGKAYASLSMAVGAIYIWTY 163 (240)
Q Consensus 90 g~ll~-ri~r~p~~~rg~~i~a~~f~N~~~Lpl~ii~aL~~~~-----~~~FG~~~~~~~~g~aYi~l~~~~~~i~~WT~ 163 (240)
++.+. |.+|.+++..-+ +++.+ ++|+.. +..-+..++....+++-+.++..+.. +++.+
T Consensus 100 ~~~lg~r~~~l~~~~~~L-ia~Gt-------------sICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam-~~~P~ 164 (305)
T PF03601_consen 100 TYWLGRRLFGLDRKLAIL-IAAGT-------------SICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAM-FLYPL 164 (305)
T ss_pred HHHHHHHHhCCCHHHHHH-HHhhc-------------ccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHH-HHHHH
Confidence 88888 999998775433 22211 233221 11223344566677777777776543 34444
Q ss_pred HHHHHhhc
Q 026344 164 VYYVMSLY 171 (240)
Q Consensus 164 G~~ll~~~ 171 (240)
-.+.+..+
T Consensus 165 l~~~l~l~ 172 (305)
T PF03601_consen 165 LGHALGLS 172 (305)
T ss_pred HHHHhCCC
Confidence 44444443
No 21
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=72.97 E-value=13 Score=34.56 Aligned_cols=104 Identities=14% Similarity=0.128 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhhHHHHHHhcccCChhHHhhhh-hHHHHHHHHHHHHHHHHHHH
Q 026344 15 LKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLW-FMPVNILLSFLIGSALAWIL 93 (240)
Q Consensus 15 l~V~lii~vGy~la~~r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~-~i~v~~ll~~llg~~lg~ll 93 (240)
++..+.+.+|..++ . ++++.++.+.+= .++.+|+..|. +..+++.+++.... ..++..++..++...+++.+
T Consensus 174 i~allplliG~~lg--n---l~~~l~~~~~~G-i~~lLp~~~~~-lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~ 246 (326)
T PRK05274 174 VGAVLPLLVGFILG--N---LDPELRQFLGKA-VPVLIPFFAFA-LGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLA 246 (326)
T ss_pred hHHHHHHHHHHHHH--h---HHHhhHHHhcCC-cEEEHHHHHHH-HhcceeHhHHHhcCCcchhhhhhHhhccchhhHhH
Confidence 34447778888887 3 555444444333 33488888777 67777888887763 44444455555566667777
Q ss_pred HHHhcCCCCCccceeeeeccCCchhhHHHHHHh
Q 026344 94 IKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPA 126 (240)
Q Consensus 94 ~ri~r~p~~~rg~~i~a~~f~N~~~Lpl~ii~a 126 (240)
.|+++..++..+.-+ ..+.+|..-=|-++..+
T Consensus 247 ~Rl~~~~~g~~g~a~-~ttaG~aic~pAAvaa~ 278 (326)
T PRK05274 247 DRLIGGGNGVAGAAA-GSTAGNAVATPAAVAAA 278 (326)
T ss_pred hheeecCCCcchHHH-HHHHHHHHHHHHHHHhh
Confidence 788865555444433 34567777666666433
No 22
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=71.93 E-value=51 Score=30.66 Aligned_cols=106 Identities=15% Similarity=0.111 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhhHHHHHHhcccCChhHHhhhhh-HHHHHHHHHHHHHHHHH
Q 026344 13 PILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWF-MPVNILLSFLIGSALAW 91 (240)
Q Consensus 13 ~Vl~V~lii~vGy~la~~r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~~-i~v~~ll~~llg~~lg~ 91 (240)
+.+-.++=+.+|+++. -+|++.|+.+++-+ .+..|.+-| .+...++++++.+-+. ..+..+++.+++....+
T Consensus 170 ~lv~~ilPlliG~ilG-----NLD~~~r~fl~~~~-~~lIpFf~F-aLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~~ 242 (314)
T TIGR00793 170 VFVGAVLPFLVGFALG-----NLDPELRDFFSKAV-QTLIPFFAF-ALGNTIDLGVIIQTGLLGILLGVSVIILTGIPLI 242 (314)
T ss_pred HHHHHHHHHHHHHHHh-----cCCHHHHHHhccCC-Ceeeehhhh-hhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHH
Confidence 3344555567898887 78999999888754 466676666 4667779999977644 34445667777778888
Q ss_pred HHHHHhcCCCCCccceeeeeccCCchhhHHHHHHh
Q 026344 92 ILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPA 126 (240)
Q Consensus 92 ll~ri~r~p~~~rg~~i~a~~f~N~~~Lpl~ii~a 126 (240)
+.-|++...+..-|.- .+...+|...-|-.+.++
T Consensus 243 ~~dr~~~g~~g~aG~A-~sstAGnAvatPaavA~a 276 (314)
T TIGR00793 243 LADKFIGGGDGTAGIA-ASSSAGAAVATPVLIAEM 276 (314)
T ss_pred HHHHHhcCCCCchhhH-HHHHHHHhhhhHHHHHHh
Confidence 8888775333333443 356779999999988655
No 23
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=70.75 E-value=14 Score=36.88 Aligned_cols=113 Identities=16% Similarity=0.062 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCChhHH----------------HHHHHHHHHHHhhHHHHHHhcccCCh---hHHh
Q 026344 10 ALMPILKVLLVTALGLVLAIDRIDLLGHSVT----------------HSLNNLVFYVFNPALIGSNLAETITY---QSLI 70 (240)
Q Consensus 10 al~~Vl~V~lii~vGy~la~~r~gil~~~~~----------------~~LsklVf~V~lPaLiF~~la~~it~---~~l~ 70 (240)
.-+|++-+|+++++||++. |.++-+-.-- -.+...+-++++=..+| .+.=+..+ ++++
T Consensus 8 ~~~p~l~lfl~i~lG~~lG--~iki~~~~LG~~~gvLfvgl~~G~~g~~i~~~v~~~gl~lFvy-~vG~~~Gp~Ff~~l~ 84 (562)
T TIGR03802 8 RSNPEIALFLSLALGYLIG--KIKFGSFQLGGVAGSLIVAVLIGQLGIQIDPGVKAVFFALFIF-AIGYEVGPQFFASLK 84 (562)
T ss_pred HHCHHHHHHHHHHHhHhhc--ceEEeeeecchHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH-HhhhccCHHHHHHHH
Confidence 3578999999999999999 5543221111 11333344444433333 23222233 3444
Q ss_pred h-hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccceeeeeccCCchhhHHHHHHhh
Q 026344 71 S-LWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAV 127 (240)
Q Consensus 71 ~-~~~i~v~~ll~~llg~~lg~ll~ri~r~p~~~rg~~i~a~~f~N~~~Lpl~ii~aL 127 (240)
. -|...+.+++..+++.++.+.+.+++..+...-..+. +.+.-|+-.|+-+. +++
T Consensus 85 ~~g~~~~~~a~~~~~~~~~~~~~~~~~~g~~~~~~~Gl~-aGalT~tp~l~aA~-~a~ 140 (562)
T TIGR03802 85 KDGLREIILALVFAVSGLITVYALAKIFGLDKGTAAGLA-AGGLTQSAVIGTAG-DAI 140 (562)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH-hchhhccHHHHHHH-HHH
Confidence 3 2445556677778888999999999998866544433 56677888888874 455
No 24
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=69.60 E-value=66 Score=29.95 Aligned_cols=103 Identities=18% Similarity=0.162 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhhHHHHHHhcccCChhHHhhhhhH-HHHHHHHHHHHHHHHHHH
Q 026344 15 LKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFM-PVNILLSFLIGSALAWIL 93 (240)
Q Consensus 15 l~V~lii~vGy~la~~r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~~i-~v~~ll~~llg~~lg~ll 93 (240)
+...+=+.+|.+++ . ++++.++.+.+=+- +.+|-..| .+..+++++++.+.++- .+..++...+++.+++++
T Consensus 167 v~lilpILiGmilG--N---ld~~~~~~l~~Gi~-f~I~f~~f-~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i 239 (312)
T PRK12460 167 VAALLPLVLGMILG--N---LDPDMRKFLTKGGP-LLIPFFAF-ALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFA 239 (312)
T ss_pred HHHHHHHHHHHHHh--c---cchhhHHHHhccce-EeHHHHHH-HhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 44566677888887 3 55555555554422 24444444 45667799999887544 445567778888888888
Q ss_pred HHHhcCCCCCccceeeeeccCCchhhHHHHHHh
Q 026344 94 IKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPA 126 (240)
Q Consensus 94 ~ri~r~p~~~rg~~i~a~~f~N~~~Lpl~ii~a 126 (240)
.|++|.+++. +. ..+...+|..-=|-++..+
T Consensus 240 ~rllg~~~~~-g~-li~stAGnAIcgpAAVaAa 270 (312)
T PRK12460 240 DRLVGGTGIA-GA-AASSTAGNAVATPLAIAAA 270 (312)
T ss_pred HHHhCCChhH-HH-HHHHHhhHHHHHHHHHHHh
Confidence 9988765443 22 2234478888777777644
No 25
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=65.81 E-value=33 Score=32.19 Aligned_cols=123 Identities=15% Similarity=0.169 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhhHHHHHHhcccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 026344 17 VLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWILIKI 96 (240)
Q Consensus 17 V~lii~vGy~la~~r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~~i~v~~ll~~llg~~lg~ll~ri 96 (240)
++++..+|.+++ -..+=.-.+...++++-.|. ++.-+++.-|..++...-.+.++.++..+.-.++.+...|+
T Consensus 250 ~v~vsi~gLi~a--LtPf~~lpgs~elgtv~lY~-----~v~vias~Ad~~~i~taP~~i~~gf~il~~h~~v~f~~~Kl 322 (384)
T COG5505 250 LVLVSITGLIIA--LTPFERLPGSQELGTVLLYL-----FVVVIASPADLRLIVTAPLIILFGFIILISHLAVSFAAGKL 322 (384)
T ss_pred ehHHHHHHHHHH--hCccccCCchhhhhHHHHHH-----HHHHhccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777 33333334456677766653 45667777678888774444455566666667778888899
Q ss_pred hcCCCCCccceeeeeccCCchhhHHHHHHhhhhcCCCCCCCcchhhchhhHHHHHHHHHhhH
Q 026344 97 TRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAI 158 (240)
Q Consensus 97 ~r~p~~~rg~~i~a~~f~N~~~Lpl~ii~aL~~~~~~~FG~~~~~~~~g~aYi~l~~~~~~i 158 (240)
+|++-.. +..++..|.|..--+=+.|.+ |+. +-..-|+-...+.+++++.
T Consensus 323 F~~dL~~----i~~AslAniGG~~sAp~~A~A------~nr--~lv~~gvlmg~lG~~iGn~ 372 (384)
T COG5505 323 FRVDLEE----ILLASLANIGGPTSAPAMAIA------KNR--ELVAPGVLMGTLGYLIGNY 372 (384)
T ss_pred HHhHHHH----HHHHHHhccCCccchhHHHhh------cCc--hhcchHHHHHHHHHHHHhH
Confidence 9876432 334677888765554444543 332 2222444444455555443
No 26
>PRK04972 putative transporter; Provisional
Probab=64.64 E-value=70 Score=31.94 Aligned_cols=137 Identities=15% Similarity=-0.001 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCC----hhHHHH------------HHHHHHHHHhhHHHHHHhcccCC---hhHHhh-
Q 026344 12 MPILKVLLVTALGLVLAIDRIDLLG----HSVTHS------------LNNLVFYVFNPALIGSNLAETIT---YQSLIS- 71 (240)
Q Consensus 12 ~~Vl~V~lii~vGy~la~~r~gil~----~~~~~~------------LsklVf~V~lPaLiF~~la~~it---~~~l~~- 71 (240)
++++.+|+.+++||+++ |.++-+ ..+-.- +...+-++.+=..+ ..+.-+.. .+.+.+
T Consensus 12 ~~~~~lf~~i~lG~~lG--~i~~~~~~LG~~~g~L~vgl~~g~~~~~~~~~~~~~gl~lF~-~~vG~~~Gp~F~~~l~~~ 88 (558)
T PRK04972 12 NYILLLFVVLALGLCLG--KLRLGSIQLGNSIGVLVVSLLLGQQHFSINTDALNLGFMLFI-FCVGVEAGPNFFSIFFRD 88 (558)
T ss_pred CChHHHHHHHHHHHhhh--ceEEeeEecCcchHHHHHHHHHHhCCCCCChHHHHHHHHHHH-HHHhhhhhHHHHHHHHHh
Confidence 57899999999999998 443311 110011 11112222222222 12221112 223333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccceeeeeccCCchhhHHHHHHhhhhcCCCCCCC---cchhhchhhHH
Q 026344 72 LWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGD---TSVCSSYGKAY 148 (240)
Q Consensus 72 ~~~i~v~~ll~~llg~~lg~ll~ri~r~p~~~rg~~i~a~~f~N~~~Lpl~ii~aL~~~~~~~FG~---~~~~~~~g~aY 148 (240)
-+...+.+++..+++.++++.+.|+++.+...-...+ |.+.-|+-.|+.+.- ++.+. ...+ .+...+-+++|
T Consensus 89 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~-aGa~T~tp~l~~a~~-~~~~~---~~~~~~~~~~~~~~~vgY 163 (558)
T PRK04972 89 GKNYLMLALVMVGSALVIALGLGKLFGWDIGLTAGML-AGSMTSTPVLVGAGD-TLRHS---GAESRQLSLALDNLSLGY 163 (558)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh-hccccCcHHHHHHHH-HHhcc---CccccchhcccCccchhH
Confidence 2344445667778888888989999998765443333 566778888887753 33111 1111 00001246788
Q ss_pred HHHHHHHh
Q 026344 149 ASLSMAVG 156 (240)
Q Consensus 149 i~l~~~~~ 156 (240)
...|-+..
T Consensus 164 a~~y~~g~ 171 (558)
T PRK04972 164 ALTYLIGL 171 (558)
T ss_pred HhHHHHHH
Confidence 88777655
No 27
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=64.34 E-value=1.4e+02 Score=28.87 Aligned_cols=127 Identities=20% Similarity=0.164 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhhhccCCCChhHHHHHHHHH-----HHHHhhHHHHHHhcccCChhHHhhh--hhHHHHHHHHHHHHHHHH
Q 026344 18 LLVTALGLVLAIDRIDLLGHSVTHSLNNLV-----FYVFNPALIGSNLAETITYQSLISL--WFMPVNILLSFLIGSALA 90 (240)
Q Consensus 18 ~lii~vGy~la~~r~gil~~~~~~~LsklV-----f~V~lPaLiF~~la~~it~~~l~~~--~~i~v~~ll~~llg~~lg 90 (240)
++++.+..++. ..|+++++..+....+. .+++.-||+-.++..- +.+-+.+- .++| ..++..+.+.+++
T Consensus 63 il~~f~ps~Lv--~~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm-~RklLika~~r~~p-~il~g~~~a~~~g 138 (414)
T PF03390_consen 63 ILCIFVPSALV--YFGLIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGM-NRKLLIKAFARFIP-PILGGVIGAFLLG 138 (414)
T ss_pred HHHHHHHHHHH--HcCCCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhc-CHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 45555666777 99999999999998876 5688889999998875 66655542 2232 2334444445555
Q ss_pred HHHHHHhcCCCCCcccee--e-eeccCCchhhHHHHHHhhhhcCCCCCC-CcchhhchhhHHHHHHHH
Q 026344 91 WILIKITRTPPHLQGLVI--G-CCSAGNMGNLLLIIVPAVCEESNSPFG-DTSVCSSYGKAYASLSMA 154 (240)
Q Consensus 91 ~ll~ri~r~p~~~rg~~i--~-a~~f~N~~~Lpl~ii~aL~~~~~~~FG-~~~~~~~~g~aYi~l~~~ 154 (240)
.++..++.....+-=+.+ - +..-.+.|-+|+..+.+= ..| +.++-..+.++.+.+-++
T Consensus 139 ~lvG~l~G~~~~~~i~~i~lPIMgGG~GaGavPLS~~Ya~------~~g~~~~~~~s~~ipa~~lgNi 200 (414)
T PF03390_consen 139 GLVGMLFGYSFKDAIFYIVLPIMGGGMGAGAVPLSQIYAE------ALGQDAEEYFSQLIPALTLGNI 200 (414)
T ss_pred HHHHHHhCCCHHHHHHHHHhhhcCCCccccHhHHHHHHHH------HhCCCHHHHHHHHHHHHHHHHH
Confidence 555555544322111111 1 233334578999886551 233 344555666676666665
No 28
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]
Probab=58.53 E-value=20 Score=35.27 Aligned_cols=62 Identities=18% Similarity=0.219 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhhHHHHHHhcccCChhHHhhhhhHHHHHHHH
Q 026344 19 LVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLS 82 (240)
Q Consensus 19 lii~vGy~la~~r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~~i~v~~ll~ 82 (240)
++..+|.-+| +|.|+++.--++.+++.==++..|..+|..+.++ ..+|..-.-..|+.+++.
T Consensus 96 Lv~mLGigvA-E~SGll~alm~~~~~~~pk~llt~~vvfigi~s~-~asDaayVVlpPlaAmiF 157 (516)
T COG2978 96 LVVMLGIGVA-ERSGLLSALMRKLLNKVPKRLLTFTVVFIGILSH-IASDAAYVVLPPLAAMIF 157 (516)
T ss_pred HHHHHhhhhh-hhcccHHHHHHHHHhhcchHHHhhHHHHHHHHHH-HHhhcceeEecchHHHHH
Confidence 4444455445 4999999999999999999999999999999998 677766655556555443
No 29
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.22 E-value=17 Score=26.46 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=20.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 026344 71 SLWFMPVNILLSFLIGSALAWILIKI 96 (240)
Q Consensus 71 ~~~~i~v~~ll~~llg~~lg~ll~ri 96 (240)
+.|...+...+++++|.+.|++++|.
T Consensus 2 ~l~lail~ivl~ll~G~~~G~fiark 27 (71)
T COG3763 2 SLWLAILLIVLALLAGLIGGFFIARK 27 (71)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677788889999999988873
No 30
>CHL00204 ycf1 Ycf1; Provisional
Probab=57.33 E-value=10 Score=42.47 Aligned_cols=52 Identities=27% Similarity=0.533 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhHHHHHHhcccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 026344 41 HSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWILIKIT 97 (240)
Q Consensus 41 ~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~~i~v~~ll~~llg~~lg~ll~ri~ 97 (240)
-.|+.++|.++.|+++=+++... |.++.+.-.+-=+.++++.++||++..++
T Consensus 125 vFlnnlifQl~N~~iLpss~LaR-----LvniymFRcnnk~lFvtSsfvGWLiGhIl 176 (1832)
T CHL00204 125 VFLNNLIFQLFNHFILPSSMLAR-----LVNIYMFRCNNKMLFVTSSFVGWLIGHIL 176 (1832)
T ss_pred HHHhhHHHHHhhHhhcccHHHHH-----HHHHhheeccCcchhhHHHHHHHHHHHHH
Confidence 36788888888888876665443 55533333333355666777777777655
No 31
>COG2855 Predicted membrane protein [Function unknown]
Probab=56.98 E-value=1.1e+02 Score=28.72 Aligned_cols=100 Identities=14% Similarity=0.133 Sum_probs=62.1
Q ss_pred cccCChhHHhhhhhHHH-HHHHHHHHHHHHHHHHHHHhcCCCCCccceeeeeccCCchhhHHHHHHhhhhcC-----CCC
Q 026344 61 AETITYQSLISLWFMPV-NILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEES-----NSP 134 (240)
Q Consensus 61 a~~it~~~l~~~~~i~v-~~ll~~llg~~lg~ll~ri~r~p~~~rg~~i~a~~f~N~~~Lpl~ii~aL~~~~-----~~~ 134 (240)
.-+++++++.+.+.-.+ ...++...++++++.+.|.++.|++.--++-+.+ ++|+.. ...
T Consensus 80 G~~ltl~~i~~~G~~~v~~~~~~l~~t~~~~~~lg~~lgld~~~a~Lia~Gs--------------sICGasAiaA~~pv 145 (334)
T COG2855 80 GFRLTLSDIADVGGSGVLIIAITLSSTFLFAYFLGKLLGLDKKLALLIAAGS--------------SICGASAIAATAPV 145 (334)
T ss_pred cceeeHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccc--------------hhhHHHHHHHhCCc
Confidence 34778999999765444 4466677788888999999999877543322222 233321 112
Q ss_pred CCCcchhhchhhHHHHHHHHHhhHHHHHHHHHHHhhccccc
Q 026344 135 FGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYLNKS 175 (240)
Q Consensus 135 FG~~~~~~~~g~aYi~l~~~~~~i~~WT~G~~ll~~~~~~~ 175 (240)
.+.+++....+++-+.++.... .+.+..-+.++.-+++.+
T Consensus 146 ika~~~eva~aIa~V~lfgtia-~llyP~l~~~l~l~~~~~ 185 (334)
T COG2855 146 IKAEEEEVAVAIAVVVLFGTLA-MLLYPLLYPLLGLSPEQF 185 (334)
T ss_pred CCCCccccceehhhHHHHHHHH-HHHHHHHHHHhCCCcchh
Confidence 3445577777887777776654 345556666666665554
No 32
>PRK03818 putative transporter; Validated
Probab=56.37 E-value=1.3e+02 Score=30.08 Aligned_cols=50 Identities=16% Similarity=0.069 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccceeeeeccCCchhhHHHH
Q 026344 73 WFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLII 123 (240)
Q Consensus 73 ~~i~v~~ll~~llg~~lg~ll~ri~r~p~~~rg~~i~a~~f~N~~~Lpl~i 123 (240)
|...+.+++..+++.+++|++.++++.+...-...+ |.+.-|+-.|+-+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~-aGa~T~tp~l~aa~ 140 (552)
T PRK03818 91 LRLNLFAVLIVILGGLVTAILHKLFGIPLPVMLGIF-SGAVTNTPALGAGQ 140 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh-hccccccHHHHHHH
Confidence 334445667777888889988889998755332222 45556666776665
No 33
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=53.68 E-value=1.6e+02 Score=26.48 Aligned_cols=89 Identities=15% Similarity=0.214 Sum_probs=47.4
Q ss_pred CchHHHHHHHHHHHHHHH-------HHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhhHHHHHHhcccCCh-hHH--h
Q 026344 1 MEILDLFEVALMPILKVL-------LVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITY-QSL--I 70 (240)
Q Consensus 1 m~~l~~f~~al~~Vl~V~-------lii~vGy~la~~r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~it~-~~l--~ 70 (240)
|+..+.++..+.+.+-++ ..+..|.+++ =.|+.-.++.|-+..|+++-..+.+-.+. +.+ .
T Consensus 142 ~~~~dAl~IGl~Q~~AliPGiSRSG~TI~a~l~~G---------~~r~~Aa~fSFllsiP~i~gA~~l~l~~~~~~~~~~ 212 (255)
T TIGR00753 142 LTLRDAIMMGLFQCLALIPGVSRSGSTISGGLFIG---------LNRKAAAEFSFLLAIPIMFGAGLLSLKKSWDSFTSG 212 (255)
T ss_pred CCHHHHHHHHHHHHHHhccCCCCchHHHHHHHHcC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 345566666665555444 3444455444 12466788999999999998887653222 111 1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 026344 71 SLWFMPVNILLSFLIGSALAWILIKITR 98 (240)
Q Consensus 71 ~~~~i~v~~ll~~llg~~lg~ll~ri~r 98 (240)
+++...+..+.+++.|++.-..+.|..+
T Consensus 213 ~~~~~~~g~~~afi~g~~ai~~ll~~~~ 240 (255)
T TIGR00753 213 DFPELIVGFITAFVVALFAIAWFLKFLN 240 (255)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222334455555544444445554
No 34
>PRK01844 hypothetical protein; Provisional
Probab=53.53 E-value=23 Score=25.97 Aligned_cols=25 Identities=16% Similarity=0.473 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 026344 72 LWFMPVNILLSFLIGSALAWILIKI 96 (240)
Q Consensus 72 ~~~i~v~~ll~~llg~~lg~ll~ri 96 (240)
.|...+.+++..++|.++|++++|.
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark 27 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666778888999999988874
No 35
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=52.19 E-value=2.1e+02 Score=26.97 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCccceeeeecc----CCchhhHHHHHHhhhhcCCCCCCCcchhhchhhHHHHHHHHHhhH
Q 026344 83 FLIGSALAWILIKITRTPPHLQGLVIGCCSA----GNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAI 158 (240)
Q Consensus 83 ~llg~~lg~ll~ri~r~p~~~rg~~i~a~~f----~N~~~Lpl~ii~aL~~~~~~~FG~~~~~~~~g~aYi~l~~~~~~i 158 (240)
..+-.++|..+++++..++. -|...++.+| +..+.++ +..+. .+|- +.+.+-|++++-+-.+++.+
T Consensus 104 ~~~Q~~vG~~la~l~gl~p~-~Gll~Gsi~f~GGhGTAaa~g-~~fe~-------~~G~-~~a~~vg~a~AT~Glv~G~l 173 (368)
T PF03616_consen 104 AFLQNIVGLGLAKLLGLDPL-FGLLAGSIGFTGGHGTAAAFG-PTFEE-------LYGW-EGATSVGMAAATFGLVVGGL 173 (368)
T ss_pred HHHHHHHHHHHHHHhCCCch-HHHHhccccccCCccHHHHHH-HHHHH-------hcCh-hhhHHHHHHHHHHHHHHHHH
Confidence 34455566666666665543 4543332222 2222333 11111 1332 46778888888888877777
Q ss_pred HHHHHHHHHHhhcccccc
Q 026344 159 YIWTYVYYVMSLYLNKSV 176 (240)
Q Consensus 159 ~~WT~G~~ll~~~~~~~~ 176 (240)
.==-++-+++|++..+..
T Consensus 174 iGgpi~~~lirk~~~~~~ 191 (368)
T PF03616_consen 174 IGGPIANWLIRKGKLKPK 191 (368)
T ss_pred HHHHHHHHHHHcCCCCCC
Confidence 655567777777764443
No 36
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=51.28 E-value=1.9e+02 Score=28.93 Aligned_cols=86 Identities=9% Similarity=0.019 Sum_probs=51.5
Q ss_pred CChhHHHHHHHHHHHHHhhHHHHHHhcccCChhHHhh-hhhHHHHHHHHHHHHHHHHHHHH-HHhcCCCCCccceeeeec
Q 026344 35 LGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLIS-LWFMPVNILLSFLIGSALAWILI-KITRTPPHLQGLVIGCCS 112 (240)
Q Consensus 35 l~~~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~~-~~~i~v~~ll~~llg~~lg~ll~-ri~r~p~~~rg~~i~a~~ 112 (240)
+++.+...+..+=+.+|+=|.=..+=.+- .+.+.+ .|.+.+..++..++..++++++. +++|.+...--..+ |.+
T Consensus 441 ~p~~a~~~l~~~GL~lFla~vG~~aG~~f--~~~l~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~-aG~ 517 (562)
T TIGR03802 441 IPSSASWLLKDLGLALFIAVVGLSAGPQA--VTAIKEMGLTLFLLGIVVTILPLIITMLIGKYVLKYDPALLLGAL-AGA 517 (562)
T ss_pred cCHHHHHHHHHHhHHHHHHHHHHhhhHHH--HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh-hcc
Confidence 78888888888888888776544332221 223333 34445566667777777788777 57888654322222 345
Q ss_pred cCCchhhHHHH
Q 026344 113 AGNMGNLLLII 123 (240)
Q Consensus 113 f~N~~~Lpl~i 123 (240)
..|+-.|+.+.
T Consensus 518 ~t~t~~l~~a~ 528 (562)
T TIGR03802 518 RTATPALGAVL 528 (562)
T ss_pred CCCcHHHHHHH
Confidence 56666665554
No 37
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.19 E-value=14 Score=27.17 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 026344 4 LDLFEVALMPILKVLLVTALGLVLAIDRIDL 34 (240)
Q Consensus 4 l~~f~~al~~Vl~V~lii~vGy~la~~r~gi 34 (240)
|+.|+.++...+-+++.|.+||+.. |+-+
T Consensus 1 M~t~lltFg~Fllvi~gMsiG~I~k--rk~I 29 (77)
T COG2991 1 MTTFLLTFGIFLLVIAGMSIGYIFK--RKSI 29 (77)
T ss_pred CccHHHHHHHHHHHHHHHhHhhhee--cccc
Confidence 3567788888888999999999987 6644
No 38
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=50.32 E-value=1.6e+02 Score=25.18 Aligned_cols=131 Identities=17% Similarity=0.128 Sum_probs=61.2
Q ss_pred HHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhhHHHHHHhccc-CChhHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHh
Q 026344 20 VTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAET-ITYQSLISL-WFMPVNILLSFLIGSALAWILIKIT 97 (240)
Q Consensus 20 ii~vGy~la~~r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~-it~~~l~~~-~~i~v~~ll~~llg~~lg~ll~ri~ 97 (240)
...+|++++ +....+-+....++..+.++.+= ++=.++.++ ...+++.+. |...+.++.+.+-+.+.+++..+++
T Consensus 4 ~li~Gi~lG--~~~~~~~~~~~~~~~~~L~lLLF-~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll 80 (191)
T PF03956_consen 4 ALILGILLG--YFLRPPFSLIDKISTYALYLLLF-LVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLLL 80 (191)
T ss_pred eHHHHHHHH--HHhcccccccccHHHHHHHHHHH-HHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566555 44444422223444444433332 222344443 345566643 3444455555555666666777777
Q ss_pred cCCCCCccceeeeeccCCchhhHHHHHHhhhhcCCCCCCCcchhhchhhHHHHHHHHHhhHHHHHHHHHHHh
Q 026344 98 RTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMS 169 (240)
Q Consensus 98 r~p~~~rg~~i~a~~f~N~~~Lpl~ii~aL~~~~~~~FG~~~~~~~~g~aYi~l~~~~~~i~~WT~G~~ll~ 169 (240)
..| .+.....+++|+=...=+.-+.+. .|. +.| +.+++.++.--++..-.-+-+.|
T Consensus 81 ~~~--~~~~lav~sG~GwYSlsg~~i~~~--------~~~-----~~G-~iafl~n~~RE~~a~~~~P~~~r 136 (191)
T PF03956_consen 81 GLS--LKESLAVASGFGWYSLSGVLITQL--------YGP-----ELG-TIAFLSNLFREILAIILIPLLAR 136 (191)
T ss_pred cCC--HHHHHHHHccCcHHHhHHHHHHhh--------hCH-----HHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 544 333333345555444444444322 222 122 34455555555555555555555
No 39
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=49.05 E-value=96 Score=30.58 Aligned_cols=52 Identities=21% Similarity=0.300 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhhHHHHHHhcccCChhHHhhhh
Q 026344 17 VLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLW 73 (240)
Q Consensus 17 V~lii~vGy~la~~r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~ 73 (240)
+++.+++|.+++ .....+.- ..=..+++.+++|.++|..=.+. ++.++.+.+
T Consensus 25 ~v~lil~Gi~lg--~~~~~~~~--~~~~~~~~~~~Lp~lLF~~g~~~-~~~~l~~~~ 76 (525)
T TIGR00831 25 PIALILAGLLLG--LAGLLPEV--PLDREIVLFLFLPPLLFEAAMNT-DLRELRENF 76 (525)
T ss_pred HHHHHHHHHHHH--hccccCCC--CCCHHHHHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 456667788877 43332210 11124567899999999987765 898887765
No 40
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=48.60 E-value=1.1e+02 Score=27.49 Aligned_cols=90 Identities=19% Similarity=0.258 Sum_probs=52.5
Q ss_pred CchHHHHHHHHHHHHHHH-------HHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhhHHHHHHhcccCChhH----H
Q 026344 1 MEILDLFEVALMPILKVL-------LVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQS----L 69 (240)
Q Consensus 1 m~~l~~f~~al~~Vl~V~-------lii~vGy~la~~r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~it~~~----l 69 (240)
|+..+.++..+.+.+-++ ..+..|.+.+ =.++.-.++.|-++.|+.+-..+.+-.+..+ .
T Consensus 142 ~~~~dal~iGl~Q~lAl~PGiSRSG~Ti~~~l~~G---------~~r~~A~~fSFllsiP~ilga~~l~~~~~~~~~~~~ 212 (259)
T PF02673_consen 142 ITFKDALIIGLAQGLALIPGISRSGATITAGLLLG---------LDREEAARFSFLLSIPAILGAGLLELKDLFSAGLDS 212 (259)
T ss_pred CCHHHHHHHHHHHHcccCCCcChHHHHHHHHHHCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCh
Confidence 345555555555544433 3344444333 1246678899999999999998876433221 2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 026344 70 ISLWFMPVNILLSFLIGSALAWILIKITRT 99 (240)
Q Consensus 70 ~~~~~i~v~~ll~~llg~~lg~ll~ri~r~ 99 (240)
.++....+..+++++.|++.-+.+.|..+.
T Consensus 213 ~~~~~~~ig~~~afv~g~l~i~~ll~~~~~ 242 (259)
T PF02673_consen 213 GSWPPLLIGFVVAFVVGYLAIKWLLRFLKR 242 (259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 233334444566667777666666666653
No 41
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=47.74 E-value=81 Score=30.53 Aligned_cols=88 Identities=15% Similarity=0.143 Sum_probs=55.8
Q ss_pred ccCCCChhH---HHHHHHHHHHHHhhHHHHHHhcccCChhHHhhhhhHH--HHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 026344 31 RIDLLGHSV---THSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMP--VNILLSFLIGSALAWILIKITRTPPHLQG 105 (240)
Q Consensus 31 r~gil~~~~---~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~~i~--v~~ll~~llg~~lg~ll~ri~r~p~~~rg 105 (240)
-.|+++++- .+.+.+++.+-++|++++--=....+++++.+..-.. +.++.+.+...+.++++.|+++.-+- ..
T Consensus 286 ~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g~YPv-Es 364 (414)
T PF03390_consen 286 AFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLVGFYPV-ES 364 (414)
T ss_pred HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCChH-HH
Confidence 778999765 5678899999999998887655545888888753222 22344444555567788888876443 33
Q ss_pred ceeee---eccCCchhh
Q 026344 106 LVIGC---CSAGNMGNL 119 (240)
Q Consensus 106 ~~i~a---~~f~N~~~L 119 (240)
.++++ +..+.+|++
T Consensus 365 AItaGLC~an~GGtGDv 381 (414)
T PF03390_consen 365 AITAGLCMANMGGTGDV 381 (414)
T ss_pred HHHhhhcccCCCCCCcc
Confidence 33332 223445555
No 42
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=47.38 E-value=26 Score=34.77 Aligned_cols=47 Identities=17% Similarity=0.137 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhhHHHHHHhccc
Q 026344 16 KVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAET 63 (240)
Q Consensus 16 ~V~lii~vGy~la~~r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~ 63 (240)
.+++++.+|..++ +|.|.++.--++.+.+.--+..+|..+|..+.++
T Consensus 92 G~vlv~mlgvgva-e~sG~i~a~i~~~v~~~p~~~it~ivvf~gv~s~ 138 (508)
T PRK11339 92 GAILALVLGAGLA-ERVGLLPALMVKMASHVNARYASYMVLFIAFFSH 138 (508)
T ss_pred HHHHHHHHHHHHH-HHhhHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 4455555565555 3999999999999999888888888888888776
No 43
>PRK11281 hypothetical protein; Provisional
Probab=47.24 E-value=3.3e+02 Score=29.82 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=24.9
Q ss_pred HHHHHHhhHHHHHHhcccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 026344 46 LVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRT 99 (240)
Q Consensus 46 lVf~V~lPaLiF~~la~~it~~~l~~~~~i~v~~ll~~llg~~lg~ll~ri~r~ 99 (240)
....+.+|.++.+.++...+.+...+. +.-++.++...+++|++.+.++.
T Consensus 625 ~~~~~~~pl~~~~~~~~~~~~~~~~d~----lg~~~~i~~~~~~~~~~~~~~~~ 674 (1113)
T PRK11281 625 RLSLALLPLLFWSVVAELSPLGLADDV----IGQAVIIIALALIAFLVWPLCRE 674 (1113)
T ss_pred HHHHHHHHHHHHHHHHhhCchhhhhhh----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 334577888888777765333322221 11112222334455566666654
No 44
>COG0679 Predicted permeases [General function prediction only]
Probab=43.56 E-value=2.5e+02 Score=25.46 Aligned_cols=89 Identities=13% Similarity=0.125 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhhHHHHHHhcccCChhHHhhhhhHHHHHHH--HHHHHHHHHHHH
Q 026344 16 KVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILL--SFLIGSALAWIL 93 (240)
Q Consensus 16 ~V~lii~vGy~la~~r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~~i~v~~ll--~~llg~~lg~ll 93 (240)
|.+.-..+|..++ ..|+--++.....-+..-+...|+-++.-=++ +..........-.+.... -.++.-+++++.
T Consensus 169 P~i~a~i~g~~~~--~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~-L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~~ 245 (311)
T COG0679 169 PLIIALILGLLLN--LLGISLPAPLDTAVDLLASAASPLALIALGLS-LAFLKLKGSKPPIILIALSLKLLLAPLVALLV 245 (311)
T ss_pred cHHHHHHHHHHHH--HcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhh-cchhhhccccchhHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666 66666666666666666667777766543322 122222222112222222 356666666777
Q ss_pred HHHhcCCCCCccce
Q 026344 94 IKITRTPPHLQGLV 107 (240)
Q Consensus 94 ~ri~r~p~~~rg~~ 107 (240)
.+.+..+...+...
T Consensus 246 ~~~~~l~~~~~~v~ 259 (311)
T COG0679 246 AKLLGLSGLALQVL 259 (311)
T ss_pred HHHcCCChHHHHHH
Confidence 77777665555443
No 45
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=42.96 E-value=22 Score=28.46 Aligned_cols=22 Identities=9% Similarity=0.489 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q 026344 79 ILLSFLIGSALAWILIKITRTP 100 (240)
Q Consensus 79 ~ll~~llg~~lg~ll~ri~r~p 100 (240)
+++.+++|+++|+++.|+....
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 5677889999999998877543
No 46
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=41.64 E-value=3.1e+02 Score=25.93 Aligned_cols=116 Identities=14% Similarity=0.163 Sum_probs=69.3
Q ss_pred ccCCCChhHHHHHHHHH-----HHHHhhHHHHHHhcccCChhHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 026344 31 RIDLLGHSVTHSLNNLV-----FYVFNPALIGSNLAETITYQSLISL--WFMPVNILLSFLIGSALAWILIKITRTPPHL 103 (240)
Q Consensus 31 r~gil~~~~~~~LsklV-----f~V~lPaLiF~~la~~it~~~l~~~--~~i~v~~ll~~llg~~lg~ll~ri~r~p~~~ 103 (240)
..|+++++..+..+.+. .+++.-||+-.++.+- +.+-|.+- .++| ..++..+.+.+++.++..++..+..+
T Consensus 5 ~~~~~p~~~~~~~~~fm~~~~Fl~fyIa~LI~GSIL~m-~Rk~Lik~~~r~~p-~il~g~~~a~~~g~lvG~l~G~~~~~ 82 (347)
T TIGR00783 5 FYNILPQNVIDATSNFMKGSNFLYLYIACLIVGSILGM-NRKLLLKALMRFIP-PALIGMVLAVIVGILVGTLFGLGFDH 82 (347)
T ss_pred EeCCCCHHHHHHHHHHHccCChHHHHHHHHHHhhhhhc-cHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHhH
Confidence 67899999999988854 4688899999999875 66655542 2232 23344455555565666665544332
Q ss_pred cccee--e-eeccCCchhhHHHHHHhhhhcCCCCCCC-cchhhchhhHHHHHHHH
Q 026344 104 QGLVI--G-CCSAGNMGNLLLIIVPAVCEESNSPFGD-TSVCSSYGKAYASLSMA 154 (240)
Q Consensus 104 rg~~i--~-a~~f~N~~~Lpl~ii~aL~~~~~~~FG~-~~~~~~~g~aYi~l~~~ 154 (240)
-=+++ - +..-.+.|-+|+..+.+ ...|. .++-..+.++.+.+-++
T Consensus 83 ~~~~i~lPIm~GG~GaGavPLS~~Y~------~~~g~~~~~~~s~~ip~~~igni 131 (347)
T TIGR00783 83 SLMYIVMPIMAGGVGAGIVPLSIIYS------AITGRSSEEIFSQLIPAVIIGNI 131 (347)
T ss_pred hhheeeehhcCCCcccchhhHHHHHH------HHhCCCHHHHHHHHHHHHHHHHH
Confidence 22222 2 23333467899988755 12343 34455566666655554
No 47
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=41.36 E-value=2.4e+02 Score=28.21 Aligned_cols=35 Identities=9% Similarity=0.058 Sum_probs=25.6
Q ss_pred HHHHHHHHhhHHHHHHhcccCChhHHhh-hhhHHHHH
Q 026344 44 NNLVFYVFNPALIGSNLAETITYQSLIS-LWFMPVNI 79 (240)
Q Consensus 44 sklVf~V~lPaLiF~~la~~it~~~l~~-~~~i~v~~ 79 (240)
..+.+.+++|.++|..=... +..++.+ ++.+...+
T Consensus 65 ~~lf~~~~LPpIlFe~g~~l-~~~~f~~n~~~Il~lA 100 (559)
T TIGR00840 65 SSYFFLYLLPPIVLDAGYFM-PQRNFFENLGSILIFA 100 (559)
T ss_pred HHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 46788899999999987765 7777776 44444444
No 48
>PRK05326 potassium/proton antiporter; Reviewed
Probab=40.91 E-value=3.7e+02 Score=26.55 Aligned_cols=54 Identities=17% Similarity=0.091 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhhHHHHHHhcccCChhHHhhhh
Q 026344 17 VLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLW 73 (240)
Q Consensus 17 V~lii~vGy~la~~r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~ 73 (240)
++.+...|..++ +......+..+.....+-+++.|. +|..+.-.++++++.+.+
T Consensus 247 ~la~~iaGl~l~--n~~~~~~~~i~~~~~~l~~l~~~~-~Fv~lGl~~~~~~l~~~~ 300 (562)
T PRK05326 247 FLAVYLAGLVLG--NRPIRHRHSILRFFDGLAWLAQIG-MFLVLGLLVTPSRLLDIA 300 (562)
T ss_pred HHHHHHHHHHHh--CCcccchHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHH
Confidence 445556787777 555444455555666666777766 677777777888776643
No 49
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=40.79 E-value=3.6e+02 Score=26.92 Aligned_cols=46 Identities=11% Similarity=0.051 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhhHHHHHHhccc
Q 026344 17 VLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAET 63 (240)
Q Consensus 17 V~lii~vGy~la~~r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~ 63 (240)
+++++.+|..++ +|.|.++.--++.+.|.--+..+|..+|..+.++
T Consensus 89 ~vlv~mlGvGva-e~tG~i~a~i~~~v~~~p~~~~t~ivv~~gv~s~ 134 (513)
T TIGR00819 89 AILALLLGAGIA-EKSGLIPALMRKLASHSNAKLASFMVLFIAFFSH 134 (513)
T ss_pred HHHHHHHHHHHH-HHhcHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 333444454444 3999999999999999888888888888888776
No 50
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=40.36 E-value=18 Score=25.09 Aligned_cols=24 Identities=33% Similarity=0.649 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 026344 73 WFMPVNILLSFLIGSALAWILIKI 96 (240)
Q Consensus 73 ~~i~v~~ll~~llg~~lg~ll~ri 96 (240)
+++.+..++++++|+++||++...
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~ 41 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLP 41 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566778888899998876653
No 51
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=39.72 E-value=4.1e+02 Score=26.78 Aligned_cols=83 Identities=13% Similarity=0.208 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHhcccCChhHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccceeeeeccCCc
Q 026344 38 SVTHSLNNLVFYVFNPALIGSNLAETITYQSLISL-WFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNM 116 (240)
Q Consensus 38 ~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~-~~i~v~~ll~~llg~~lg~ll~ri~r~p~~~rg~~i~a~~f~N~ 116 (240)
+....+..+ -.+++| +.|.++.-++++..+.+. |.+....++.++.=.+..++.+|.++.+.+. +..+ +...+-.
T Consensus 261 ~le~~i~pf-~~lll~-lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~-a~~~-gl~L~~~ 336 (621)
T PRK03562 261 ALESDIEPF-KGLLLG-LFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLARPLGVPRKQ-RRWF-AVLLGQG 336 (621)
T ss_pred HHHHHHHHH-HHHHHH-HHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhH-HHHH-HHHHhcc
Confidence 333444444 246665 778888888899887654 3333333334444445566777888776442 2222 2333444
Q ss_pred hhhHHHHH
Q 026344 117 GNLLLIIV 124 (240)
Q Consensus 117 ~~Lpl~ii 124 (240)
|-+.+.+.
T Consensus 337 Gef~~vl~ 344 (621)
T PRK03562 337 GEFAFVVF 344 (621)
T ss_pred ccHHHHHH
Confidence 55555554
No 52
>KOG3796 consensus Ammonium transporter RHBG [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=39.16 E-value=2e+02 Score=27.82 Aligned_cols=67 Identities=15% Similarity=0.223 Sum_probs=40.6
Q ss_pred HHHHHHHhcCCCCCccceeeeeccCCchhhHHHHHHhhhhcCCCCCCCcchhhchhhHHHHHHHHHhhHHHHHHH
Q 026344 90 AWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYV 164 (240)
Q Consensus 90 g~ll~ri~r~p~~~rg~~i~a~~f~N~~~Lpl~ii~aL~~~~~~~FG~~~~~~~~g~aYi~l~~~~~~i~~WT~G 164 (240)
=+++..+++++.......+.++ ..+.|+++ |-|-.+.++=+. +..+.+.-+--++.+++++++|-+=
T Consensus 161 e~v~~n~~~v~d~g~smtih~F----gAYFGLav--A~~l~k~~~~~~--~~~~gs~y~sdLfAMIGtlFLWmfW 227 (442)
T KOG3796|consen 161 EMVISNIFNVNDHGGSMTIHAF----GAYFGLAV--AWCLYKPNLEGT--TENEGSAYHSDLFAMIGTLFLWMFW 227 (442)
T ss_pred HHHHHHhccccccCCceEEEeh----hhhhhhhH--hhhccCcccccc--ccccCceecchHHHHHHHHHHHHhc
Confidence 3455566776655444444322 24788888 555444444444 3335566666788999999999664
No 53
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=38.88 E-value=3.7e+02 Score=26.06 Aligned_cols=99 Identities=17% Similarity=0.137 Sum_probs=55.6
Q ss_pred HHHhhhccCCCChhHHHHHHHHH-----HHHHhhHHHHHHhcccCChhHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHhc
Q 026344 25 LVLAIDRIDLLGHSVTHSLNNLV-----FYVFNPALIGSNLAETITYQSLISLW-FMPVNILLSFLIGSALAWILIKITR 98 (240)
Q Consensus 25 y~la~~r~gil~~~~~~~LsklV-----f~V~lPaLiF~~la~~it~~~l~~~~-~i~v~~ll~~llg~~lg~ll~ri~r 98 (240)
.++. ..++++++..+..+.+- .+++.+||+.-++..- +..-+.+-. -.....++.++.+.+.|.++.-++.
T Consensus 87 a~~v--~~~llp~~~i~avt~fm~~snFL~fyIA~LI~GSILgm-nRklLIk~~~~~i~~il~g~v~A~~~g~lVG~~~G 163 (438)
T COG3493 87 AYLV--FYNLLPSNVIKAVTNFMGKSNFLDFYIAALIVGSILGM-NRKLLIKSLKRYIPPILAGMVGAAAVGILVGLLFG 163 (438)
T ss_pred HHHH--HhccCCHHHHHHHHHHhcCCChHHHHHHHHHHhhhhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445 78899999999888874 6789999999999874 444443321 1111222333334444444444444
Q ss_pred CCCCCccc--eeeeeccCC-chhhHHHHHHh
Q 026344 99 TPPHLQGL--VIGCCSAGN-MGNLLLIIVPA 126 (240)
Q Consensus 99 ~p~~~rg~--~i~a~~f~N-~~~Lpl~ii~a 126 (240)
.+..+.=. ++-..+-+| .|.+|+..+.+
T Consensus 164 ~~~~d~~m~~vlPIM~GG~GaGavPLS~iYs 194 (438)
T COG3493 164 LSFQDTMMYVVLPIMGGGMGAGAVPLSEIYS 194 (438)
T ss_pred CChHHeeeeEEeeeccCCCCCCcccHHHHHH
Confidence 43322211 122222333 35889988755
No 54
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=38.87 E-value=2.2e+02 Score=23.49 Aligned_cols=87 Identities=16% Similarity=0.029 Sum_probs=47.3
Q ss_pred CCChhHHHHHHHHHHHHHhhHHHHHHhcccCChhHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccceeee
Q 026344 34 LLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLW---FMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGC 110 (240)
Q Consensus 34 il~~~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~---~i~v~~ll~~llg~~lg~ll~ri~r~p~~~rg~~i~a 110 (240)
-++.++...+..+=+.+|+=|.=...=.+- .+.+++.+ ...+.++++.+.+.+..++..+++|.+...-...+ +
T Consensus 46 ~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f--~~~l~~~gg~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~-a 122 (154)
T TIGR01625 46 YIPFSANLFIREFGLMLFLYGVGLSAGPGF--FSSLKDGGGLLRINGGALITVVPTLLVAVALIKLLRINYALTAGML-A 122 (154)
T ss_pred ecChhHHHHHHHHHHHHHHHHHHHHhhHHH--HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH-h
Confidence 356677777887777777766533221111 23343422 22223455555566666777788888754332222 4
Q ss_pred eccCCchhhHHHH
Q 026344 111 CSAGNMGNLLLII 123 (240)
Q Consensus 111 ~~f~N~~~Lpl~i 123 (240)
.+..|+-.|..+.
T Consensus 123 Ga~T~tpaL~aa~ 135 (154)
T TIGR01625 123 GATTNTPALDAAN 135 (154)
T ss_pred ccccChHHHHHHH
Confidence 4556666666555
No 55
>PRK04972 putative transporter; Provisional
Probab=38.44 E-value=2.5e+02 Score=28.06 Aligned_cols=105 Identities=13% Similarity=0.044 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhhh-ccCCCChhHHHHHHHHHHHHHhhHHHHHHhcccCChhHHhh-hhhHHHHHHHHHHHHHHHHHHH
Q 026344 16 KVLLVTALGLVLAID-RIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLIS-LWFMPVNILLSFLIGSALAWIL 93 (240)
Q Consensus 16 ~V~lii~vGy~la~~-r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~~-~~~i~v~~ll~~llg~~lg~ll 93 (240)
+++.=+.+|++=+.+ ..+-+++.+...+..+=..+|+=|.=..+=.+- .+.+.+ .|.+.+..++..++..++++++
T Consensus 416 ~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f--~~~~~~~g~~~~~~g~~~t~~~~~~~~~~ 493 (558)
T PRK04972 416 LLFAGIMLGFLRANHPTFGYIPQGALNMVKEFGLMVFMAGVGLSAGSGI--NNGLGAVGGQMLIAGLIVSLVPVVICFLF 493 (558)
T ss_pred HHHHHHHHHhccccCCCceeeCHHHHHHHHHHhHHHHHHHHHHhhhHHH--HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444445556543321 233489999999999999888877655443322 223333 4455555556666666666666
Q ss_pred H-HHhcCCCCCccceeeeeccCCchhhHHHH
Q 026344 94 I-KITRTPPHLQGLVIGCCSAGNMGNLLLII 123 (240)
Q Consensus 94 ~-ri~r~p~~~rg~~i~a~~f~N~~~Lpl~i 123 (240)
. +++|.+...--..+ |.+..|+-.|..+.
T Consensus 494 ~~~~~k~~~~~~~G~~-aG~~t~~~~l~~~~ 523 (558)
T PRK04972 494 GAYVLRMNRALLFGAI-MGARTCAPAMEIIS 523 (558)
T ss_pred HHHHHcCCHHHHHHHH-hCCCCCcHHHHHHH
Confidence 6 57787644221111 33444544444444
No 56
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=38.22 E-value=1.1e+02 Score=27.46 Aligned_cols=49 Identities=14% Similarity=0.113 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhHHHHHHhcc-cCC-hhHHhhhhhHHHHHHHHHHHHHHHH
Q 026344 41 HSLNNLVFYVFNPALIGSNLAE-TIT-YQSLISLWFMPVNILLSFLIGSALA 90 (240)
Q Consensus 41 ~~LsklVf~V~lPaLiF~~la~-~it-~~~l~~~~~i~v~~ll~~llg~~lg 90 (240)
+.|+- +--+|+|..++..+.. +++ ...+...|..++..+++.+++.++.
T Consensus 259 k~LTv-vt~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~~~~ 309 (318)
T TIGR00383 259 KILTV-VSTIFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIALGPL 309 (318)
T ss_pred HHHHH-HHHHHHHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHHHHHH
Confidence 34443 4458899999988887 654 3333322333333333334444333
No 57
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=37.72 E-value=3.9e+02 Score=29.29 Aligned_cols=65 Identities=12% Similarity=0.204 Sum_probs=33.8
Q ss_pred ccCCCChhHHHHHH--HHHHHHHhhHHHHHHhcccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 026344 31 RIDLLGHSVTHSLN--NLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRT 99 (240)
Q Consensus 31 r~gil~~~~~~~Ls--klVf~V~lPaLiF~~la~~it~~~l~~~~~i~v~~ll~~llg~~lg~ll~ri~r~ 99 (240)
|+||=.+...+... +....+.+|.++........+.....+ .+.-++.++++.+++|+..+++|.
T Consensus 587 HF~w~~~~v~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~----~lgr~~~i~~~~~l~~~~~~~~~~ 653 (1109)
T PRK10929 587 HFGWPRERVARAMRYYLLSIGLIVPLIMALITFDNLNDREFSG----TLGRLCFILLCGALSLVTLSLKRA 653 (1109)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhhc----cHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56665544444333 333567888888766666533332222 112234444555666666666653
No 58
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=37.69 E-value=1.8e+02 Score=28.32 Aligned_cols=78 Identities=15% Similarity=0.256 Sum_probs=43.5
Q ss_pred cCCCCCccceeeeeccCC-c-hhhHHHHHHhhhhcCCCCCCCcchhhchhhHHHHHHHHHhhHHHHHHHHHHHhhccccc
Q 026344 98 RTPPHLQGLVIGCCSAGN-M-GNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYLNKS 175 (240)
Q Consensus 98 r~p~~~rg~~i~a~~f~N-~-~~Lpl~ii~aL~~~~~~~FG~~~~~~~~g~aYi~l~~~~~~i~~WT~G~~ll~~~~~~~ 175 (240)
+.|+.-|+.+++..+.++ . ..+.+|+...||+. .+|= +++-| .....-++|.+....+-.+++..
T Consensus 156 W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s---~~GW------~sifY----~~g~~g~i~~~~w~~~~~d~P~~ 222 (466)
T KOG2532|consen 156 WAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES---SLGW------PSIFY----VFGIVGLIWFILWFLFYSDSPSK 222 (466)
T ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc---CCCC------chHHH----HHHHHHHHHHHHHHHHhcCCccc
Confidence 456666777665433333 1 24455555577775 4665 44444 34445678888877776666655
Q ss_pred cccCCCCccccceecc
Q 026344 176 VSDAGTNKDSRIHIIS 191 (240)
Q Consensus 176 ~~~~~~~~~~~~~~~~ 191 (240)
| +.+.+.|.....
T Consensus 223 h---~~is~~El~~I~ 235 (466)
T KOG2532|consen 223 H---PNISEKELKYIE 235 (466)
T ss_pred C---CCCCHHHHHHHH
Confidence 5 355554444433
No 59
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=37.44 E-value=3.5e+02 Score=25.31 Aligned_cols=124 Identities=10% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhc--cCCCChhHHHHHH---HHHHHHHhhHHHHHHhcccCChhHHhhhhhHHHHHHHHHHHHHHHH
Q 026344 16 KVLLVTALGLVLAIDR--IDLLGHSVTHSLN---NLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALA 90 (240)
Q Consensus 16 ~V~lii~vGy~la~~r--~gil~~~~~~~Ls---klVf~V~lPaLiF~~la~~it~~~l~~~~~i~v~~ll~~llg~~lg 90 (240)
.+.+-+.+|.+++ . +.-.++..++.+. |...++..=.| .-+++.+++.+.+.-.+...+..+++.++.
T Consensus 33 ~~~~AillG~~l~--n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLl-----G~~l~~~~i~~~G~~~l~~~~~~v~~~~~~ 105 (335)
T TIGR00698 33 ALFLAILLGMVAG--NTIYPQRDEEKKRGVLFAKPFLLRIGITLY-----GFRLTFPYIADVGPNEIVADTLILTSTFFL 105 (335)
T ss_pred HHHHHHHHHHHHh--ccccccchhhccchHHHHHHHHHHHHHHHH-----CccccHHHHHHhhHHHHHHHHHHHHHHHHH
Q ss_pred --HHHHHHhcCCCCCccceeeeeccCCchhhHHHHHHhhhhcC-----CCCCCCcchhhchhhHHHHHHHHHhhHHH
Q 026344 91 --WILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEES-----NSPFGDTSVCSSYGKAYASLSMAVGAIYI 160 (240)
Q Consensus 91 --~ll~ri~r~p~~~rg~~i~a~~f~N~~~Lpl~ii~aL~~~~-----~~~FG~~~~~~~~g~aYi~l~~~~~~i~~ 160 (240)
|+..|.++.+++ .+..+++.+ ++|+.. +..-...|+....+++-+.++..+..++.
T Consensus 106 ~~~~g~k~l~l~~~-~~~Lia~Gt-------------sICGaSAi~A~a~~i~A~~~~~a~ava~V~lfgt~am~l~ 168 (335)
T TIGR00698 106 TVFLGSSRLKLDKQ-MSILLGAGS-------------SICGAAAVAAIEPVIKAEKEKVSVAIAIVVIFGTTGIFLY 168 (335)
T ss_pred HHHHHHHHhCCChh-HHHHHHcch-------------hHHHHHHHHHhccccCCCccceeeeehHHHHHHHHHHHHH
No 60
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=37.43 E-value=3.3e+02 Score=27.61 Aligned_cols=63 Identities=21% Similarity=0.329 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHhhhccCCCChhH--HHHH---HHHHHHHHhhHHHHHHhcccCChhHH
Q 026344 4 LDLFEVALMPILKVLLVT----ALGLVLAIDRIDLLGHSV--THSL---NNLVFYVFNPALIGSNLAETITYQSL 69 (240)
Q Consensus 4 l~~f~~al~~Vl~V~lii----~vGy~la~~r~gil~~~~--~~~L---sklVf~V~lPaLiF~~la~~it~~~l 69 (240)
++.+-..+.|++|+++-. ++..++. ..|+++++. -..+ +. .+..|||.++-++.++.+.....
T Consensus 100 ~~~is~if~PiIP~l~a~Gll~gl~~ll~--~~g~~~~~s~~~~~l~~i~~-a~f~fLPiliays~Ak~~~~np~ 171 (610)
T TIGR01995 100 IDLISGVFTPLLPALAGAGLLKAVLTLLT--MTGLISADSQTYQILNAMGD-AVFYFLPILLAITAAKRFKVNPY 171 (610)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHH--hccccCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCChH
Confidence 444555667777766433 3344555 667777632 1222 23 45679999999999998765543
No 61
>COG1455 CelB Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]
Probab=36.99 E-value=1.5e+02 Score=28.84 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhhHHHH
Q 026344 4 LDLFEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIG 57 (240)
Q Consensus 4 l~~f~~al~~Vl~V~lii~vGy~la~~r~gil~~~~~~~LsklVf~V~lPaLiF 57 (240)
+.....+-..++.++...++||.++ |.-=.++-+...+|-..|-+..|-.+.
T Consensus 72 ~~~~~~~T~gImsl~~af~Iay~La--k~~~~~~~~~g~~sl~~f~i~~~~~~~ 123 (432)
T COG1455 72 LMQVYNGTFGIMSLLVAFGIAYSLA--KSYGVDALAAGLLSLAAFFIVTPLSIA 123 (432)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH--HHcCCCCcchHHHHHHHHHHhccchhc
Confidence 3445667778899999999999999 555566666778888888888887665
No 62
>PRK11677 hypothetical protein; Provisional
Probab=36.83 E-value=40 Score=27.51 Aligned_cols=21 Identities=10% Similarity=0.365 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 026344 78 NILLSFLIGSALAWILIKITR 98 (240)
Q Consensus 78 ~~ll~~llg~~lg~ll~ri~r 98 (240)
++++.+++|+++|+++.|...
T Consensus 5 ~a~i~livG~iiG~~~~R~~~ 25 (134)
T PRK11677 5 YALIGLVVGIIIGAVAMRFGN 25 (134)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 445777889999999998754
No 63
>PF12295 Symplekin_C: Symplekin tight junction protein C terminal; InterPro: IPR022075 This domain family is found in eukaryotes, and is approximately 180 amino acids in length. There is a single completely conserved residue P that may be functionally important. Symplekn has been localized, by light and electron microscopy, to the plaque associated with the cytoplasmic face of the tight junction-containing zone (zonula occludens) of polar epithelial cells and of Sertoli cells of testis. However, both the mRNA and the protein can also be detected in a wide range of cell types that do not form tight junctions. Careful analyses have revealed that the protein occurs in all these diverse cells in the nucleoplasm, and only in those cells forming tight junctions is it recruited, partly but specifically, to the plaque structure of the zonula occludens.
Probab=36.51 E-value=61 Score=27.57 Aligned_cols=76 Identities=21% Similarity=0.262 Sum_probs=52.1
Q ss_pred HHHHHHHHhhhccCCCChhH-HHHHHHHHHHHHhhHHHHHHhcccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-h
Q 026344 20 VTALGLVLAIDRIDLLGHSV-THSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWILIKI-T 97 (240)
Q Consensus 20 ii~vGy~la~~r~gil~~~~-~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~~i~v~~ll~~llg~~lg~ll~ri-~ 97 (240)
+-++++.+. .+++++++. ...+++++=.--+|.|++.++.++++. .. .+-.++. .++..++.|- +
T Consensus 77 ~~a~~~Cf~--~~~vf~~evla~~l~ql~~~~~lP~LfmRTviq~~~~--~p--------~L~~FV~-~iL~rLi~kqvW 143 (183)
T PF12295_consen 77 IEALDLCFS--MRDVFTQEVLASALQQLVEQPPLPLLFMRTVIQALQK--YP--------SLRSFVS-NILSRLIQKQVW 143 (183)
T ss_pred HHHHHHHHc--ccccCCHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHH--hh--------HHHHHHH-HHHHHHHHHHHh
Confidence 778899999 899888777 568999999999999999999887321 11 1223333 5556666664 4
Q ss_pred cCCCCCcccee
Q 026344 98 RTPPHLQGLVI 108 (240)
Q Consensus 98 r~p~~~rg~~i 108 (240)
+.++-++|++.
T Consensus 144 ~~~~lW~Gfi~ 154 (183)
T PF12295_consen 144 KNKKLWEGFIK 154 (183)
T ss_pred cChhHHHHHHH
Confidence 55444555544
No 64
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=36.17 E-value=1.7e+02 Score=29.10 Aligned_cols=48 Identities=21% Similarity=0.281 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhhHHHHHHhcccC
Q 026344 16 KVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETI 64 (240)
Q Consensus 16 ~V~lii~vGy~la~~r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~i 64 (240)
.+++++.+|.-++ +|.|+++.-.++.+.+.==+...|+.+|..+.+++
T Consensus 82 G~Vlv~mlgvgvA-E~sGll~a~~r~~~~~~p~~~vt~~v~f~Gi~sni 129 (502)
T PF03806_consen 82 GLVLVMMLGVGVA-EKSGLLSALMRKLVLKAPPRLVTPAVVFVGIMSNI 129 (502)
T ss_pred HHHHHHHHHHHHH-HHhchHHHHHHHHhccCCcchhhHHHHHHHHHhcc
Confidence 4445555565555 49999999999999999999999999999999984
No 65
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=34.67 E-value=1.7e+02 Score=28.87 Aligned_cols=133 Identities=19% Similarity=0.142 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhhHHHHHHhcccCChhHHhhhhhHHHHHHH
Q 026344 5 DLFEVALMPILKVL---LVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILL 81 (240)
Q Consensus 5 ~~f~~al~~Vl~V~---lii~vGy~la~~r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~~i~v~~ll 81 (240)
++++..+.++..+- .-...|.+.- |.| ....-.++.+..-+.-.+..++...+.. +-+. ++-+.+ .+
T Consensus 59 ~~lwS~~vs~f~iG~~~Gs~~~~~la~--~~G---RK~~l~~~~~l~~~~~~~~~~s~~~~~~--e~li-~GR~i~--Gl 128 (485)
T KOG0569|consen 59 DLLWSLIVSIFFIGGMIGSFSSGLLAD--RFG---RKNALLLSNLLAVLAALLMGLSKSAPSF--EMLI-LGRLIV--GL 128 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--hhc---chHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHH-HHHHHH--HH
Confidence 44555554444443 3333444443 444 2233356666666777777777776652 2111 111111 11
Q ss_pred HHHHHHHHHHHHHHH-hcCCCCCccceeeeeccCCch-hhHHHHHHhhhhcCCCCCCCcchhhchhhHHHHHHHHHhhHH
Q 026344 82 SFLIGSALAWILIKI-TRTPPHLQGLVIGCCSAGNMG-NLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIY 159 (240)
Q Consensus 82 ~~llg~~lg~ll~ri-~r~p~~~rg~~i~a~~f~N~~-~Lpl~ii~aL~~~~~~~FG~~~~~~~~g~aYi~l~~~~~~i~ 159 (240)
. .|...+.....+ ---|.+.||. ++++...+ .+|..+.+.++-+ ..+|+ +...+|+.....+-.++
T Consensus 129 ~--~gl~~~~~pmyl~E~sP~~~RG~---~g~~~~~~~~~g~ll~~~~~l~--~ilGt-----~~~W~~l~~~~~i~~~~ 196 (485)
T KOG0569|consen 129 A--CGLSTGLVPMYLTEISPKNLRGA---LGTLLQIGVVIGILLGQVLGLP--SLLGT-----EDLWPYLLAFPLIPALL 196 (485)
T ss_pred H--hHHHHHHHHHHHhhcChhhhccH---HHHHHHHHHHHHHHHHHHHccH--HhcCC-----CcchHHHHHHHHHHHHH
Confidence 1 111111111111 2357888988 44444443 5555555444322 25676 26678877776654433
No 66
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=34.60 E-value=3.6e+02 Score=24.55 Aligned_cols=54 Identities=24% Similarity=0.388 Sum_probs=33.3
Q ss_pred CchHHHHHHHHHHHHHHH-------HHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhhHHHHHHhccc
Q 026344 1 MEILDLFEVALMPILKVL-------LVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAET 63 (240)
Q Consensus 1 m~~l~~f~~al~~Vl~V~-------lii~vGy~la~~r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~ 63 (240)
|+..+.++..+.+.+-++ ..+..|.+++ + .++.-.++.|-...|+++-..+.+-
T Consensus 148 ~~~~dAl~IGl~Q~~AliPGiSRSG~TI~a~l~~G------~---~r~~Aa~fSFllsiP~i~gA~~l~~ 208 (276)
T PRK12554 148 LTWKDAIIIGLAQALALIPGVSRSGATIIAGLLLG------L---TREAAARFSFLLAIPAVFGAGLLEL 208 (276)
T ss_pred CCHHHHHHHHHHHHHHhccCCCCchHHHHHHHHcC------C---CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666555554443 3334444433 1 2456778999999999998887664
No 67
>PRK00523 hypothetical protein; Provisional
Probab=34.39 E-value=69 Score=23.47 Aligned_cols=24 Identities=8% Similarity=0.088 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 026344 73 WFMPVNILLSFLIGSALAWILIKI 96 (240)
Q Consensus 73 ~~i~v~~ll~~llg~~lg~ll~ri 96 (240)
|...+.+++..++|.++|++++|.
T Consensus 5 ~l~I~l~i~~li~G~~~Gffiark 28 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYFVSKK 28 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566688899999988774
No 68
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=33.59 E-value=83 Score=20.97 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=20.1
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 026344 66 YQSLISLWFMPVNILLSFLIGSALAWILIKIT 97 (240)
Q Consensus 66 ~~~l~~~~~i~v~~ll~~llg~~lg~ll~ri~ 97 (240)
.+++.++.+=.+.+++.+++|+.++..+.+..
T Consensus 8 ~~~ii~~lP~iv~AilIl~vG~~va~~v~~~~ 39 (53)
T PF05552_consen 8 LDQIIAYLPNIVGAILILIVGWWVAKFVRKLV 39 (53)
T ss_dssp -----GGHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777767777788888888877776654
No 69
>COG4129 Predicted membrane protein [Function unknown]
Probab=32.52 E-value=1.8e+02 Score=27.17 Aligned_cols=37 Identities=11% Similarity=0.075 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccceeeeeccCCc
Q 026344 80 LLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNM 116 (240)
Q Consensus 80 ll~~llg~~lg~ll~ri~r~p~~~rg~~i~a~~f~N~ 116 (240)
.+-+.++..++|+++.++..|....+.+.+..+.+++
T Consensus 13 tlKt~ia~~La~~ia~~l~~~~~~~A~i~AV~~l~~t 49 (332)
T COG4129 13 TLKTGLAAGLALLIAHLLGLPQPAFAGISAVLCLSPT 49 (332)
T ss_pred HHHHHHHHHHHHHHHHHhCCCchHHHHHHHhhcccCc
Confidence 4566778888888888888877666665554444443
No 70
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=30.73 E-value=2.8e+02 Score=22.17 Aligned_cols=96 Identities=13% Similarity=0.192 Sum_probs=44.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHH-----HHhhHHHHHHhcccCChhHHhh-hhh
Q 026344 1 MEILDLFEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFY-----VFNPALIGSNLAETITYQSLIS-LWF 74 (240)
Q Consensus 1 m~~l~~f~~al~~Vl~V~lii~vGy~la~~r~gil~~~~~~~LsklVf~-----V~lPaLiF~~la~~it~~~l~~-~~~ 74 (240)
|++.+.|..++...+-.-++.++..++ ..+.+|++....+...... -..|..+-....+.....+-.. ...
T Consensus 61 isf~~a~~~g~~~~~ia~li~~v~~~i---~~~~IdP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (163)
T PF13858_consen 61 ISFGQAFKVGFLISLIAGLISAVFQYI---YFNYIDPDFFENYIEAQIEEMKESGSNPEMIEEQIEQELEMKESFSPFSL 137 (163)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCHHHHHHHHHHHHHHHHHcccCHhhHHHHHHHHHHHHHhcCcHHH
Confidence 345555555554444444444433332 3456788887777666655 1223333322222110110001 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 026344 75 MPVNILLSFLIGSALAWILIKITRT 99 (240)
Q Consensus 75 i~v~~ll~~llg~~lg~ll~ri~r~ 99 (240)
......-....|.+++.+++-++|.
T Consensus 138 ~~~~~~~~l~~G~i~sli~a~i~kk 162 (163)
T PF13858_consen 138 AFSGFISNLIFGFIISLIIALILKK 162 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1113345556677777777766653
No 71
>PRK09546 zntB zinc transporter; Reviewed
Probab=30.54 E-value=1.2e+02 Score=27.75 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=25.1
Q ss_pred HHHHHHhhHHHHHHhcc-cCC-hhHHhhhhhHHHHHHHHHHHHHHHHHH
Q 026344 46 LVFYVFNPALIGSNLAE-TIT-YQSLISLWFMPVNILLSFLIGSALAWI 92 (240)
Q Consensus 46 lVf~V~lPaLiF~~la~-~it-~~~l~~~~~i~v~~ll~~llg~~lg~l 92 (240)
++--+|+|..+.+.+.. +++ .-.+..-+-.++..+++.+++.++.|.
T Consensus 269 ilt~IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~im~~i~~~~~~~ 317 (324)
T PRK09546 269 LMAMVFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCLLLVVLIGGVAWW 317 (324)
T ss_pred HHHHHHHHHHHHHhhhccccCCCCCcCCcchHHHHHHHHHHHHHHHHHH
Confidence 44468999988888887 654 333322222223333444444444443
No 72
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=30.51 E-value=3.6e+02 Score=24.90 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=32.5
Q ss_pred HHHhcccCChhHHhh----hhhHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCc
Q 026344 57 GSNLAETITYQSLIS----LWFMPVNILLSFLIGSALAWILIKIT-RTPPHLQ 104 (240)
Q Consensus 57 F~~la~~it~~~l~~----~~~i~v~~ll~~llg~~lg~ll~ri~-r~p~~~r 104 (240)
...+.-+++.+|+.+ ++.+.+..++.+++.=+++|.+++++ +.++..+
T Consensus 53 mf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~p~l~ 105 (328)
T TIGR00832 53 MYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDLFEYI 105 (328)
T ss_pred HHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 334445567777766 45566666778888888899888875 6665543
No 73
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=30.44 E-value=3.5e+02 Score=25.70 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhhhccCC---CChhHHHHHHHHHH
Q 026344 15 LKVLLVTALGLVLAIDRIDL---LGHSVTHSLNNLVF 48 (240)
Q Consensus 15 l~V~lii~vGy~la~~r~gi---l~~~~~~~LsklVf 48 (240)
.|++.....|-+++ -.|+ +.+.+++.+..++.
T Consensus 213 ~pLig~Lm~Gnl~r--Esgv~~rLs~taqn~l~nivT 247 (360)
T PF03977_consen 213 APLIGMLMFGNLLR--ESGVVERLSKTAQNELMNIVT 247 (360)
T ss_pred HHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHHHH
Confidence 46666777788888 7777 44666666666554
No 74
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=29.94 E-value=5.4e+02 Score=25.26 Aligned_cols=113 Identities=12% Similarity=0.095 Sum_probs=52.5
Q ss_pred HHHhhHHHHHHhcccCChhHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHhcCCCCCccceeeeeccCCchhhHHHHHHhh
Q 026344 49 YVFNPALIGSNLAETITYQSLISLWFMPVN-ILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAV 127 (240)
Q Consensus 49 ~V~lPaLiF~~la~~it~~~l~~~~~i~v~-~ll~~llg~~lg~ll~ri~r~p~~~rg~~i~a~~f~N~~~Lpl~ii~aL 127 (240)
.+|+| +.|..+.-.+++..+.+.+...+. .++.++.=.+..++.++.++.|.+ .++ ..+...+.-+-+.+.+. ++
T Consensus 279 ~~f~p-lFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~~~~~~g~~~~-~a~-~~gl~l~~~Gef~lii~-~~ 354 (558)
T PRK10669 279 DAFAV-LFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFFLVRLFGHSRR-TAL-TIAASLAQIGEFAFILA-GL 354 (558)
T ss_pred HHHHH-HHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh-hHH-HHHHHHhcccchHHHHH-HH
Confidence 56777 677777778888877654322222 222222223344556667766533 223 22333333455555543 22
Q ss_pred hhcCCCCCCCcchhhchhhHHHHHHHHHhhHHHHHHHHHHHh
Q 026344 128 CEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMS 169 (240)
Q Consensus 128 ~~~~~~~FG~~~~~~~~g~aYi~l~~~~~~i~~WT~G~~ll~ 169 (240)
..+.+ ..++ +...- +.-+.+-.+.-++++|.+..+..+
T Consensus 355 ~~~~g-ii~~--~~~~~-~v~~~~~t~~~~P~l~~~~~~~~~ 392 (558)
T PRK10669 355 GMALN-LLPQ--AGQNL-VLAGAILSIMLNPVLFTLLERYLA 392 (558)
T ss_pred HHhCC-CCCH--HHHHH-HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 22222 2322 33332 222223333335566666655543
No 75
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.72 E-value=81 Score=25.81 Aligned_cols=22 Identities=14% Similarity=0.433 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 026344 78 NILLSFLIGSALAWILIKITRT 99 (240)
Q Consensus 78 ~~ll~~llg~~lg~ll~ri~r~ 99 (240)
++++.+++|.++|++++|+.+.
T Consensus 10 ~a~igLvvGi~IG~li~Rlt~~ 31 (138)
T COG3105 10 YALIGLVVGIIIGALIARLTNR 31 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHcch
Confidence 4567778899999999998754
No 76
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=29.35 E-value=7.1e+02 Score=26.40 Aligned_cols=60 Identities=8% Similarity=0.145 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhhccCCCChhHH---HHHHHHHHHHHhhHHHHHHhcccCChhHHhhhhhHHH
Q 026344 17 VLLVTALGLVLAIDRIDLLGHSVT---HSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPV 77 (240)
Q Consensus 17 V~lii~vGy~la~~r~gil~~~~~---~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~~i~v 77 (240)
.++.+++|++++..-.+++++... ..+.--+..+.++..+|..=.+ ++...+...|..+.
T Consensus 41 ~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~-L~~~~Lrr~wrsV~ 103 (810)
T TIGR00844 41 SMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVE-LPRKYMLKHWVSVT 103 (810)
T ss_pred HHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHhHHHHH
Confidence 456677788877323467776542 1222225667788888776555 57877777664443
No 77
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=28.64 E-value=2.4e+02 Score=22.03 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 026344 13 PILKVLLVTALGLVLA 28 (240)
Q Consensus 13 ~Vl~V~lii~vGy~la 28 (240)
|.+-+.++..+||++-
T Consensus 4 P~~li~~~s~~~f~~~ 19 (237)
T PF02932_consen 4 PCILIVVLSWLSFWLP 19 (237)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhheEeC
Confidence 4455666677777765
No 78
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=28.37 E-value=2.3e+02 Score=24.07 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHh
Q 026344 38 SVTHSLNNLVFYVFNPALIGSNL 60 (240)
Q Consensus 38 ~~~~~LsklVf~V~lPaLiF~~l 60 (240)
|++..++.+.+-+++..|+++.+
T Consensus 72 DsR~~i~e~fmP~alv~lv~~~v 94 (170)
T PF11241_consen 72 DSRRNIGEFFMPVALVLLVLSFV 94 (170)
T ss_pred hcccchHHHHHHHHHHHHHHHHH
Confidence 56677888888888888887777
No 79
>PRK05326 potassium/proton antiporter; Reviewed
Probab=28.35 E-value=3.9e+02 Score=26.41 Aligned_cols=57 Identities=18% Similarity=0.118 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhhHHHHHHhcccCChhHHhhhhh
Q 026344 16 KVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWF 74 (240)
Q Consensus 16 ~V~lii~vGy~la~~r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~~ 74 (240)
.++..+++|.+++..-.|+++.+. ..+.+.+.+++++.++|..=.+. +++.+++.+.
T Consensus 32 ~ll~~il~GillGp~~lg~i~~~~-~~~~~~i~~l~L~~iLF~~Gl~~-~~~~l~~~~~ 88 (562)
T PRK05326 32 SLLLFLAIGMLAGEDGLGGIQFDN-YPLAYLVGNLALAVILFDGGLRT-RWSSFRPALG 88 (562)
T ss_pred HHHHHHHHHHHhCccccCCcccCc-HHHHHHHHHHHHHHHHHcCccCC-CHHHHHHHHH
Confidence 455677788888722223333222 34667888999999999886665 8888877543
No 80
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=28.24 E-value=5.8e+02 Score=25.06 Aligned_cols=19 Identities=11% Similarity=0.181 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhhhccC
Q 026344 13 PILKVLLVTALGLVLAIDRID 33 (240)
Q Consensus 13 ~Vl~V~lii~vGy~la~~r~g 33 (240)
.+.-++..++.|++.- |.+
T Consensus 319 ~~~g~v~~i~ag~lsd--r~~ 337 (495)
T KOG2533|consen 319 DVGGIVGLILAGYLSD--RLK 337 (495)
T ss_pred HhhhHHHHHHHHHHHH--HHh
Confidence 4456667777787766 655
No 81
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=28.17 E-value=4.6e+02 Score=25.81 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHH----HHHHHHHHHhhhccCCCCh----------hHHHHHHHHHHHHHhhHHHHHHh
Q 026344 3 ILDLFEVALMPILKVL----LVTALGLVLAIDRIDLLGH----------SVTHSLNNLVFYVFNPALIGSNL 60 (240)
Q Consensus 3 ~l~~f~~al~~Vl~V~----lii~vGy~la~~r~gil~~----------~~~~~LsklVf~V~lPaLiF~~l 60 (240)
+.+-+.+.+++++|++ +++++..++. ..|+.+. .....+....|++..|.+.-+.-
T Consensus 127 ~~~~lm~gvS~mIP~vvagGll~ai~~l~~--~~g~~~~~~~~~~~~~~~~l~~ig~a~F~fm~Pil~ayiA 196 (482)
T PRK11404 127 VMSHLMAGVSAALPFVIGGGILVALANMLV--QFGLPYTDMSKGAPSFTWVVESIGYLGFTFMIPIMGAYIA 196 (482)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHh--ccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888999999988 4555666655 4444321 13456677788866687776654
No 82
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=28.17 E-value=73 Score=27.30 Aligned_cols=22 Identities=9% Similarity=0.394 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 026344 76 PVNILLSFLIGSALAWILIKIT 97 (240)
Q Consensus 76 ~v~~ll~~llg~~lg~ll~ri~ 97 (240)
.+.+++.+++|+++||++.+..
T Consensus 3 ii~~i~~~~vG~~~G~~~~~~~ 24 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLVRKKI 24 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888886643
No 83
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.03 E-value=4.7e+02 Score=24.57 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=11.1
Q ss_pred cCCCCCCCCCCCCChhHH
Q 026344 205 RKPLLHSSDRRSPDDSQI 222 (240)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~ 222 (240)
++..+++++.|+|.|+.+
T Consensus 354 ~ng~~~~~~~dsp~~~K~ 371 (374)
T KOG1608|consen 354 ENGVLTSNRQDSPSDKKE 371 (374)
T ss_pred ccCccccccCCCCCchhh
Confidence 334556777777777643
No 84
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=27.56 E-value=4.6e+02 Score=25.47 Aligned_cols=88 Identities=9% Similarity=0.025 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhhccCCCChhH---HHHHHHHHHHHHhhHHHHHHhcccCChhHHhhhh--hHHHHHHHHHHHHHHHHHHH
Q 026344 19 LVTALGLVLAIDRIDLLGHSV---THSLNNLVFYVFNPALIGSNLAETITYQSLISLW--FMPVNILLSFLIGSALAWIL 93 (240)
Q Consensus 19 lii~vGy~la~~r~gil~~~~---~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~--~i~v~~ll~~llg~~lg~ll 93 (240)
+++.+-.++. -.++++++. .+.++++.-+=++=.|++.-=....+++++.+-. .-.+.++...+...+.+|++
T Consensus 295 ~MIil~a~lk--~~nlvp~~i~~GA~~l~~F~sk~~t~~Lm~giGv~ytdl~ev~~alt~~~vii~~~vVl~~i~~~~f~ 372 (438)
T COG3493 295 FMIILVAILK--AANLVPKEIEEGAKQLSQFFSKNLTWPLMAGIGVAYTDLNEVAAALTWQNVIIALSVVLGAILGGAFV 372 (438)
T ss_pred HHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Confidence 4445555666 788888765 4566666665555555554433434888887742 22223333444455567788
Q ss_pred HHHhcCCCCCccceee
Q 026344 94 IKITRTPPHLQGLVIG 109 (240)
Q Consensus 94 ~ri~r~p~~~rg~~i~ 109 (240)
.|+...-+- ...+++
T Consensus 373 grl~~~YPV-EaAI~a 387 (438)
T COG3493 373 GRLMGFYPV-EAAITA 387 (438)
T ss_pred HHHhcCCch-HHHHHH
Confidence 888765332 344444
No 85
>PF09971 DUF2206: Predicted membrane protein (DUF2206); InterPro: IPR018701 This family of predicted membrane proteins from archaea has no known function.
Probab=27.53 E-value=2.5e+02 Score=26.62 Aligned_cols=62 Identities=11% Similarity=-0.014 Sum_probs=30.0
Q ss_pred cccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCc------cceeeeeccCCchhhHHHH
Q 026344 61 AETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRTPP--HLQ------GLVIGCCSAGNMGNLLLII 123 (240)
Q Consensus 61 a~~it~~~l~~~~~i~v~~ll~~llg~~lg~ll~ri~r~p~--~~r------g~~i~a~~f~N~~~Lpl~i 123 (240)
+.....+++.+.-++.+.+++.+..-.+ ...+.|..+.+. ..| +.+++....-|+|+++-..
T Consensus 171 a~~mn~~RLy~itli~LAPf~iiG~~~~-~~~i~k~~~~~~~~~~~~~~ki~~ifl~v~lLfnsG~i~~i~ 240 (367)
T PF09971_consen 171 ASVMNPTRLYQITLIFLAPFFIIGGITL-FKLINKLFRRIWKPINKNSFKILSIFLAVFLLFNSGFIYEIF 240 (367)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhcccccccchHHHHHHHHHHHHHHHhhhHHHHHh
Confidence 4455677777766555555443322222 233345444322 112 2333334446777777644
No 86
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=27.30 E-value=5.4e+02 Score=24.36 Aligned_cols=47 Identities=19% Similarity=0.240 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccceeeeeccCCchhhHHHHHHhh
Q 026344 80 LLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAV 127 (240)
Q Consensus 80 ll~~llg~~lg~ll~ri~r~p~~~rg~~i~a~~f~N~~~Lpl~ii~aL 127 (240)
++.+.+.+.+++++.|..+.|.+...... -.+.+|.--+-+++.-++
T Consensus 254 ~iy~~~~~~i~~~i~k~lgl~y~~~~~~~-ft~aSNnfeLAiAvAi~l 300 (342)
T COG0798 254 LIYFLLMFFISYFIAKALGLPYEDAAALV-FTGASNNFELAIAVAIAL 300 (342)
T ss_pred HHHHHHHHHHHHHHHHHhCCChhhhhcee-eeeccccHHHHHHHHHHh
Confidence 56667778888899999999877655533 344566555555554453
No 87
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=26.82 E-value=1.9e+02 Score=23.46 Aligned_cols=64 Identities=20% Similarity=0.304 Sum_probs=36.4
Q ss_pred ccCCCChhHHHHHHHHHHHHHhhHHHHHHhcccCChhHHh-hhhhHHHHHHH-HHHHHHHHHHHHHHHhcC
Q 026344 31 RIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLI-SLWFMPVNILL-SFLIGSALAWILIKITRT 99 (240)
Q Consensus 31 r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~-~~~~i~v~~ll-~~llg~~lg~ll~ri~r~ 99 (240)
+..|+.+.+.--++.+.+ +|.|+-+-.--... .+. ++|.+.+...+ +.++....||+.-++.|.
T Consensus 52 ~l~wv~~~a~~Ll~~m~l-lFVPa~VgVm~y~~----~l~~~~~~Il~~~iiST~lv~~vtg~~~~~l~~~ 117 (128)
T COG1380 52 KLEWVERGATFLLRNMAL-LFVPAGVGVMNYFD----LLAADGLPILVVIIISTLLVLLVTGWVVQLLIRW 117 (128)
T ss_pred cHHHHHHHHHHHHHHHHH-HHhcchHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777666766666 88898764433222 222 33444444434 444555567766666543
No 88
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=25.99 E-value=6.5e+02 Score=26.69 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhhccCCCChhH-HHHHHHHHHHHHhhHHHHHHhcccCChhHH
Q 026344 17 VLLVTALGLVLAIDRIDLLGHSV-THSLNNLVFYVFNPALIGSNLAETITYQSL 69 (240)
Q Consensus 17 V~lii~vGy~la~~r~gil~~~~-~~~LsklVf~V~lPaLiF~~la~~it~~~l 69 (240)
++.+.+.|..++ +.+++..+. ...+....- ..+=..+|.-+...+.+..+
T Consensus 267 fLAVFVAGl~~g--n~~~~~~~~~~~~f~e~ie-~LLn~~lFVlLGa~L~~~~l 317 (810)
T TIGR00844 267 LLVSFFAGTAFA--WDGWFAQKTHESNVSNVID-VLLNYAYFVYLGSILPWKDF 317 (810)
T ss_pred HHHHHHHHHHHh--cccchhhhHHHhhHHHHHH-HHHHHHHHHHHHHhhCHhhc
Confidence 456667788888 766654332 233444333 33444567777766666655
No 89
>COG0395 UgpE ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
Probab=25.66 E-value=5.1e+02 Score=23.49 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhhH
Q 026344 6 LFEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPA 54 (240)
Q Consensus 6 ~f~~al~~Vl~V~lii~vGy~la~~r~gil~~~~~~~LsklVf~V~lPa 54 (240)
++++....++.+++-...||.++ |.+.-.++ -...-+.....+|.
T Consensus 79 liva~~~t~l~i~~~~laaYala--r~~f~g~~--~~~~~~l~~lm~P~ 123 (281)
T COG0395 79 LIVAVGSTVLSLLLSSLAAYALA--RFRFKGRK--LLFLLLLLTLMLPA 123 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhccCcHH--HHHHHHHHHHHhhH
Confidence 34455556678888888999999 76655554 33333444445665
No 90
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=25.46 E-value=58 Score=24.94 Aligned_cols=34 Identities=26% Similarity=0.500 Sum_probs=22.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 026344 71 SLWFMPVNILLSFLIGSALAWILIKITRTPPHLQ 104 (240)
Q Consensus 71 ~~~~i~v~~ll~~llg~~lg~ll~ri~r~p~~~r 104 (240)
+++...+..++.+++.+++-+++.++++.|...+
T Consensus 15 sl~~~~~~l~~~~~~l~ll~~ll~~~~~~p~~~~ 48 (108)
T PF07219_consen 15 SLWVALILLLLLFVVLYLLLRLLRRLLSLPSRVR 48 (108)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 3444555556666677777778888888775443
No 91
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=25.36 E-value=6.1e+02 Score=24.32 Aligned_cols=16 Identities=13% Similarity=0.050 Sum_probs=10.5
Q ss_pred hhchhhHHHHHHHHHh
Q 026344 141 CSSYGKAYASLSMAVG 156 (240)
Q Consensus 141 ~~~~g~aYi~l~~~~~ 156 (240)
....+..|..+..++.
T Consensus 170 ~~~~a~~YF~~a~~v~ 185 (437)
T TIGR00939 170 LKKSALGYFGTPCVVQ 185 (437)
T ss_pred hhhhhhhHHHHHHHHH
Confidence 4567777877766643
No 92
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=25.15 E-value=1.4e+02 Score=27.36 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhHHHHHHhcc-cCCh-hHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 026344 41 HSLNNLVFYVFNPALIGSNLAE-TITY-QSLISLWFMPVNILLSFLIGSALAWIL 93 (240)
Q Consensus 41 ~~LsklVf~V~lPaLiF~~la~-~it~-~~l~~~~~i~v~~ll~~llg~~lg~ll 93 (240)
|.|+- +-.+|+|..+..++.. +++. -.+..-+..++..+++.+++.++.|.+
T Consensus 263 k~LTi-~s~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~~~~~~~~~~f 316 (322)
T COG0598 263 KILTI-VSTIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILMLLLALLLYLYF 316 (322)
T ss_pred HHHHH-HHHHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 44443 4458888888888887 7663 333333333444445555555555544
No 93
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=25.10 E-value=1.8e+02 Score=29.47 Aligned_cols=50 Identities=30% Similarity=0.351 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHhhhccCCCChhHHHH----------------HHH-----------HHHHHHhhHHHHHHhccc
Q 026344 14 ILKVLLVTALGLVLAIDRIDLLGHSVTHS----------------LNN-----------LVFYVFNPALIGSNLAET 63 (240)
Q Consensus 14 Vl~V~lii~vGy~la~~r~gil~~~~~~~----------------Lsk-----------lVf~V~lPaLiF~~la~~ 63 (240)
++-+.+.+..||++..+|..|+++..... .++ +-|.+++|..+|.+-.+-
T Consensus 41 i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~ff~vLLPpiif~sgy~l 117 (575)
T KOG1965|consen 41 ILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLFFLVLLPPIIFNSGYSL 117 (575)
T ss_pred HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHHHHHhhchhhhccccee
Confidence 45566777889998855666888876543 233 789999999999887663
No 94
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=25.03 E-value=1.4e+02 Score=21.28 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 026344 81 LSFLIGSALAWILIKIT 97 (240)
Q Consensus 81 l~~llg~~lg~ll~ri~ 97 (240)
++.++.+.+||++.+.+
T Consensus 12 l~AlI~~pLGyl~~~~~ 28 (62)
T PF11120_consen 12 LCALIFFPLGYLARRWL 28 (62)
T ss_pred HHHHHHHhHHHHHHHHh
Confidence 44455666677666543
No 95
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=24.97 E-value=5.2e+02 Score=23.36 Aligned_cols=24 Identities=21% Similarity=0.470 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHhccc
Q 026344 40 THSLNNLVFYVFNPALIGSNLAET 63 (240)
Q Consensus 40 ~~~LsklVf~V~lPaLiF~~la~~ 63 (240)
++.-.++.|-...|+++-..+.+-
T Consensus 183 r~~Aa~fSFLlsiPai~gA~~l~~ 206 (268)
T PRK00281 183 REAAAEFSFLLAIPAMLGASLLDL 206 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999998887654
No 96
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=24.77 E-value=5.2e+02 Score=23.27 Aligned_cols=78 Identities=14% Similarity=0.166 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHhhhcc----CCCChhHHHHHHHHHHHHHhhHHHHHHhcccCChhHHhhhhhHHHHH----HHHHHH
Q 026344 14 ILKVLLVTALGLVLAIDRI----DLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNI----LLSFLI 85 (240)
Q Consensus 14 Vl~V~lii~vGy~la~~r~----gil~~~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~~i~v~~----ll~~ll 85 (240)
.+|++--+.+|.++.-++. ++++++..+.-++++.-..+|...=....--=+++++.+..+.++.= +-+.++
T Consensus 21 llPmlyA~iig~~~~~~~~~~~~k~~~~~~~~~a~~~~~~~ll~l~ak~g~~vGp~i~~i~~aGpALilQE~GnlGTill 100 (241)
T PF11299_consen 21 LLPMLYALIIGMALGPQKLKPLKKIISEKEMKFAGKLVGIALLPLIAKLGTTVGPNIPKILSAGPALILQEFGNLGTILL 100 (241)
T ss_pred hHHHHHHHHHHHHhcchhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHhhHHHHHHHhcchhhHHH
Confidence 4677777777777664444 78999999999999998888866544333322678888877766532 344445
Q ss_pred HHHHHH
Q 026344 86 GSALAW 91 (240)
Q Consensus 86 g~~lg~ 91 (240)
+.-++.
T Consensus 101 aLPiAl 106 (241)
T PF11299_consen 101 ALPIAL 106 (241)
T ss_pred HhHHHH
Confidence 544443
No 97
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=24.72 E-value=56 Score=29.76 Aligned_cols=82 Identities=16% Similarity=0.132 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHH-HHHHHhcCCCCCccceeeeeccCCchhhHHHHHHhhhhcCCCCCCCcchhhchhhHHHHHHHHHhhH
Q 026344 80 LLSFLIGSALAW-ILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAI 158 (240)
Q Consensus 80 ll~~llg~~lg~-ll~ri~r~p~~~rg~~i~a~~f~N~~~Lpl~ii~aL~~~~~~~FG~~~~~~~~g~aYi~l~~~~~~i 158 (240)
.+.++.|+++|. .+.+.-|..-+ |..++.+....|.....++++-+- -+|. ....|.++..++......
T Consensus 147 ~I~fv~g~~~G~~~ig~~nkt~~k-Rk~fi~~~~~~gi~~~~l~~~~~~------~~g~---~~~~~~~~f~I~~Fl~G~ 216 (267)
T PF07672_consen 147 QILFVAGYFLGPFTIGLWNKTNYK-RKPFIHFIISLGIVFFVLSIVVVY------FVGP---GNAAGFAFFYIFGFLAGF 216 (267)
T ss_pred HHHHHHHHhhhceeeccchhhhhh-hhhHHHHHHHHHHHHHHHHHHHHH------HhCc---chHHHHHHHHHHHHHHHH
Confidence 355566777774 33344444444 444554545556666666665431 2343 122455556666667778
Q ss_pred HHHHHHHHHHhhc
Q 026344 159 YIWTYVYYVMSLY 171 (240)
Q Consensus 159 ~~WT~G~~ll~~~ 171 (240)
+.|.+---++..+
T Consensus 217 f~WgiQ~ViL~lP 229 (267)
T PF07672_consen 217 FLWGIQGVILNLP 229 (267)
T ss_pred HHHhhhHHHhcCh
Confidence 8888776666544
No 98
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=24.28 E-value=78 Score=22.67 Aligned_cols=18 Identities=17% Similarity=0.706 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026344 79 ILLSFLIGSALAWILIKI 96 (240)
Q Consensus 79 ~ll~~llg~~lg~ll~ri 96 (240)
+++.+++|.++||.++|.
T Consensus 3 iilali~G~~~Gff~ar~ 20 (64)
T PF03672_consen 3 IILALIVGAVIGFFIARK 20 (64)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345667788888877763
No 99
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=24.27 E-value=3.7e+02 Score=25.42 Aligned_cols=91 Identities=19% Similarity=0.285 Sum_probs=44.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhccC---CCChhHHHHHHHHHHHHHhhHHHHHHhcccCChhHHhhh----h
Q 026344 1 MEILDLFEVALMPILKVLLVTALGLVLAIDRID---LLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISL----W 73 (240)
Q Consensus 1 m~~l~~f~~al~~Vl~V~lii~vGy~la~~r~g---il~~~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~----~ 73 (240)
|++++-+++ .-+++.+.+|.+++....+ .+++-....+|.- ..+.+=.+|+--+++ ++.+++.+. .
T Consensus 9 l~~~dk~l~-----~wv~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sip-iai~L~~MmYP~m~k-i~~~~~~~v~k~~k 81 (342)
T COG0798 9 LSFLDKYLT-----LWVFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIP-IAIGLILMMYPPMLK-IDFEELKNVFKDPK 81 (342)
T ss_pred hhHHHHHHH-----HHHHHHHHHHHHHHhcccchhhhcccceeCceehh-HHHHHHHHHhHHHhc-CCHHHHHHHHhcch
Confidence 345555554 4488889999888821112 1111111111111 122222333333333 467766653 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Q 026344 74 FMPVNILLSFLIGSALAWILIKITR 98 (240)
Q Consensus 74 ~i~v~~ll~~llg~~lg~ll~ri~r 98 (240)
++.+..+.-.+++-++.+.+++++.
T Consensus 82 ~L~lsL~~Nwii~P~lm~~la~~fl 106 (342)
T COG0798 82 PLILSLFVNWIIGPLLMFALAWFFL 106 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444445555666666666666655
No 100
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=24.10 E-value=6.4e+02 Score=25.56 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhhccCCCChhHHHHHHHHHHHHHhhHHHHHHhcccCChhH
Q 026344 3 ILDLFEVALMPILKVLLVTALGL-VLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQS 68 (240)
Q Consensus 3 ~l~~f~~al~~Vl~V~lii~vGy-~la~~r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~it~~~ 68 (240)
+++.+-..+.|++|.++-.++-- ++. ..||++++..-..-.=.++.|||.++-.+-++.+.-+.
T Consensus 13 ~~~~is~if~P~ip~l~a~Gll~gll~--~~g~~~~~~~l~~~~~a~fyfLPi~ia~saak~f~~n~ 77 (639)
T PRK15083 13 FGRFLSNMVMPNIGAFIAWGIITALFI--PTGWLPNETLAKLVGPMITYLLPLLIGYTGGKLVGGER 77 (639)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHH--ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 45666777888888876544321 234 56888877522223334567899999999998775554
No 101
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=23.73 E-value=1.9e+02 Score=26.77 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=14.8
Q ss_pred HHHHHHhhHHHHHHhcc-cCC
Q 026344 46 LVFYVFNPALIGSNLAE-TIT 65 (240)
Q Consensus 46 lVf~V~lPaLiF~~la~-~it 65 (240)
++--+|+|..++.+++. +++
T Consensus 261 v~s~if~pptliagiyGMNf~ 281 (316)
T PRK11085 261 VVSVVFLPPTLVASSYGMNFE 281 (316)
T ss_pred HHHHHHHHHHHHHhhcccccC
Confidence 34458899999888887 544
No 102
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=22.80 E-value=7.8e+02 Score=24.75 Aligned_cols=14 Identities=21% Similarity=0.064 Sum_probs=5.7
Q ss_pred HHhhHHHHHHhccc
Q 026344 50 VFNPALIGSNLAET 63 (240)
Q Consensus 50 V~lPaLiF~~la~~ 63 (240)
+..+--|..++.++
T Consensus 93 i~~~~~mi~~v~~T 106 (555)
T COG2194 93 IIIDKNMLLNVFET 106 (555)
T ss_pred ccccHHHHHHHhcC
Confidence 33333444444443
No 103
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=22.69 E-value=93 Score=29.13 Aligned_cols=35 Identities=23% Similarity=0.452 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 026344 72 LWFMPVNILLSFLIGSALAWILIKITRTPPHLQGL 106 (240)
Q Consensus 72 ~~~i~v~~ll~~llg~~lg~ll~ri~r~p~~~rg~ 106 (240)
+|...+..++.+++.+++.|++.++++.|...+++
T Consensus 41 l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 75 (398)
T PRK10747 41 VTGLAIILILAMVVLFAIEWLLRRIFRTGARTRGW 75 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHH
Confidence 34444444555555666777888888887765554
No 104
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=22.65 E-value=6.7e+02 Score=23.81 Aligned_cols=99 Identities=11% Similarity=0.204 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHhhhccCCCChh-------HHHHHHHHHHHHHhh---HHHHHHhcccCChh-HH
Q 026344 5 DLFEVALMPILKVL----LVTALGLVLAIDRIDLLGHS-------VTHSLNNLVFYVFNP---ALIGSNLAETITYQ-SL 69 (240)
Q Consensus 5 ~~f~~al~~Vl~V~----lii~vGy~la~~r~gil~~~-------~~~~LsklVf~V~lP---aLiF~~la~~it~~-~l 69 (240)
.-+.+.++-++|++ ++++++..+. ..+.++.. ....+....|.+..| +.+-++++..-.+. .+
T Consensus 13 ~hlmtGvS~MlP~VvagGil~ai~~~~~--g~~~~~~~~~~~~~~~l~~iG~~~f~lmvpvlaayIa~SIa~kpglapg~ 90 (359)
T PRK10478 13 QHLMTGVSHMIPFVVAGGILLAVSVMLY--GKGAVPDAVADPNLKKLFDIGVAGLTLMVPFLAAYIGYSIADRSALAPCA 90 (359)
T ss_pred HHHHhChhHhHhHHHHHHHHHHHHHHHc--cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccHHH
Confidence 44566777778877 4556666554 33334432 344555667888889 88888888752211 01
Q ss_pred hhhhhHHHH----HHHHHHHHHHHHHHHHHH--hcCCCCCccc
Q 026344 70 ISLWFMPVN----ILLSFLIGSALAWILIKI--TRTPPHLQGL 106 (240)
Q Consensus 70 ~~~~~i~v~----~ll~~llg~~lg~ll~ri--~r~p~~~rg~ 106 (240)
..-+ +.-. .+-..+.|++.||++..+ .|+|+..++.
T Consensus 91 i~G~-~a~~~~~GFlGaii~G~laGy~v~~lkki~lpk~l~~~ 132 (359)
T PRK10478 91 IGAW-VGNSFGAGFFGALIAGIIGGIVVHYLKKIPVHKVLRSV 132 (359)
T ss_pred HHHH-HHhcCCcchHHHHHHHHHHHHHHHHHHhcCCchhhHhh
Confidence 1100 0000 023344555566654432 3567776665
No 105
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=22.26 E-value=1.8e+02 Score=18.65 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 026344 8 EVALMPILKVLLVTALGLVLA 28 (240)
Q Consensus 8 ~~al~~Vl~V~lii~vGy~la 28 (240)
|.++.-++-++.++.+||-++
T Consensus 16 Wi~F~l~mi~vFi~li~ytl~ 36 (38)
T PF09125_consen 16 WIAFALAMILVFIALIGYTLA 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 556666777888888999876
No 106
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=22.10 E-value=3.7e+02 Score=26.41 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhhHHHHHHhcccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 026344 15 LKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWILI 94 (240)
Q Consensus 15 l~V~lii~vGy~la~~r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~~i~v~~ll~~llg~~lg~ll~ 94 (240)
.++++.+.+||..- -+.|-.|+++.|.++=... +|..++.. ....+.++|.++..+.
T Consensus 28 ~qif~~~fiGYa~f-------------Yl~RknF~~a~p~l~e~~~---lsk~~lG~-------i~s~f~i~YG~sKf~~ 84 (448)
T COG2271 28 IQIFLSIFIGYAAF-------------YLTRKNFNLAMPALIEDGG---LSKTQLGI-------LGSAFSITYGVSKFVM 84 (448)
T ss_pred HHHHHHHHHHHHHH-------------HHHHHhHhhccHHHHHhcC---CCHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 57888999998654 5778889999999976552 34555442 2234455666666665
Q ss_pred HHhcCCCCCc
Q 026344 95 KITRTPPHLQ 104 (240)
Q Consensus 95 ri~r~p~~~r 104 (240)
-.+......|
T Consensus 85 G~~sDr~npr 94 (448)
T COG2271 85 GVLSDRSNPR 94 (448)
T ss_pred hhhcccCCCc
Confidence 5554333333
No 107
>TIGR01996 PTS-II-BC-sucr PTS system, sucrose-specific IIBC component. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).
Probab=21.98 E-value=5.5e+02 Score=24.93 Aligned_cols=20 Identities=35% Similarity=0.492 Sum_probs=14.9
Q ss_pred HHHHHhhHHHHHHhcccCChh
Q 026344 47 VFYVFNPALIGSNLAETITYQ 67 (240)
Q Consensus 47 Vf~V~lPaLiF~~la~~it~~ 67 (240)
+| -+||.++-.+.++.+.-+
T Consensus 163 ~f-~fLPil~a~s~AKk~k~~ 182 (461)
T TIGR01996 163 AF-AFLPILIGFSAAKRFGGN 182 (461)
T ss_pred HH-HHHHHHHHHHHHHHhCCC
Confidence 44 589999999988865444
No 108
>KOG4255 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.83 E-value=1.8e+02 Score=27.99 Aligned_cols=11 Identities=18% Similarity=0.087 Sum_probs=6.3
Q ss_pred eccCCchhhHH
Q 026344 111 CSAGNMGNLLL 121 (240)
Q Consensus 111 ~~f~N~~~Lpl 121 (240)
+..+|..|||.
T Consensus 126 dc~SnVtFLPF 136 (439)
T KOG4255|consen 126 DCTSNVTFLPF 136 (439)
T ss_pred Hhhccchhhhh
Confidence 44466666654
No 109
>TIGR00366 conserved hypothetical integral membrane protein.
Probab=21.61 E-value=2.9e+02 Score=26.99 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHH
Q 026344 14 ILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVF 48 (240)
Q Consensus 14 Vl~V~lii~vGy~la~~r~gil~~~~~~~LsklVf 48 (240)
.+++.++...||.+| . .+-..|.|.++.-
T Consensus 58 ~MQM~lilvtG~~lA--~----sp~v~r~l~~la~ 86 (438)
T TIGR00366 58 GMQMALILVTGYALA--Y----SPIVYKLLKTIAS 86 (438)
T ss_pred HHHHHHHHHHHHHHh--c----CHHHHHHHHHHHh
Confidence 468889999999999 2 4555666766653
No 110
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=21.56 E-value=73 Score=29.88 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 026344 72 LWFMPVNILLSFLIGSALAWILIKITRTPPHLQGL 106 (240)
Q Consensus 72 ~~~i~v~~ll~~llg~~lg~ll~ri~r~p~~~rg~ 106 (240)
+|...+..++.+++.+++.|++.++++.|...+++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~ 75 (409)
T TIGR00540 41 ITGLAIFFIIALAIIFAFEWGLRRFFRLGAHSRGW 75 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 34444444555556666777888888877554443
No 111
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=21.42 E-value=50 Score=28.75 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=17.9
Q ss_pred ChhHHHHHHHHHHHHHhhHHHHHHhcc-cCC
Q 026344 36 GHSVTHSLNNLVFYVFNPALIGSNLAE-TIT 65 (240)
Q Consensus 36 ~~~~~~~LsklVf~V~lPaLiF~~la~-~it 65 (240)
..+..+.|+-+. -+|+|..+++++.. ++.
T Consensus 230 ~n~~m~~LT~~t-~iflPlt~i~g~fGMN~~ 259 (292)
T PF01544_consen 230 QNRVMKVLTIVT-AIFLPLTFITGIFGMNFK 259 (292)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHTTSTTS-SS
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhhCCcc
Confidence 334445554444 47799888888877 554
No 112
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=21.39 E-value=8.3e+02 Score=24.44 Aligned_cols=83 Identities=5% Similarity=0.122 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHhcccCChhHHhhhhhHHH-HHHHHHHHHHHHHHHHHHHhcCCCCCccceeeeeccCCc
Q 026344 38 SVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPV-NILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNM 116 (240)
Q Consensus 38 ~~~~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~~i~v-~~ll~~llg~~lg~ll~ri~r~p~~~rg~~i~a~~f~N~ 116 (240)
+....+..+ ..+++| +.|.++.-.+++..+.+.|+..+ ..++.+++=.+..++.++.++.+++.+ +.+ +...+.-
T Consensus 258 ~l~~~i~pf-~~lll~-lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~~~g~~~~~a-l~~-g~~L~~~ 333 (601)
T PRK03659 258 ELEIAIEPF-KGLLLG-LFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLARLYGLRSSER-MQF-AGVLSQG 333 (601)
T ss_pred HHHHHHHHH-HHHHHH-HHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH-HHH-HHHHhcc
Confidence 333445554 356664 56777888888888766554333 233334444555667777777764322 222 2344555
Q ss_pred hhhHHHHH
Q 026344 117 GNLLLIIV 124 (240)
Q Consensus 117 ~~Lpl~ii 124 (240)
|-+.+.+.
T Consensus 334 Gef~~vl~ 341 (601)
T PRK03659 334 GEFAFVLF 341 (601)
T ss_pred ccHHHHHH
Confidence 66666664
No 113
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=21.11 E-value=3.8e+02 Score=24.66 Aligned_cols=45 Identities=22% Similarity=0.437 Sum_probs=28.4
Q ss_pred HHHhcccCChh---HHhhhhhHHH-HHHHHHHHHHHHHHHHHHHhcCCC
Q 026344 57 GSNLAETITYQ---SLISLWFMPV-NILLSFLIGSALAWILIKITRTPP 101 (240)
Q Consensus 57 F~~la~~it~~---~l~~~~~i~v-~~ll~~llg~~lg~ll~ri~r~p~ 101 (240)
=..+..++|++ ++.++|+..+ ..++..+++.+.+|++.|..+.++
T Consensus 35 G~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~d~ 83 (318)
T PF05145_consen 35 GVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRISGLDR 83 (318)
T ss_pred HHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 34455566655 4555554433 345677788888899988877653
No 114
>PRK14231 camphor resistance protein CrcB; Provisional
Probab=20.93 E-value=2.7e+02 Score=22.27 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=18.6
Q ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHhhc
Q 026344 143 SYGKAYASLSMAVGAIYIWTYVYYVMSLY 171 (240)
Q Consensus 143 ~~g~aYi~l~~~~~~i~~WT~G~~ll~~~ 171 (240)
..+..|+.+..+.+-.. +-+|+.+-+.-
T Consensus 93 ~~a~~y~~~s~~~gl~a-~~lG~~l~~~~ 120 (129)
T PRK14231 93 LLAVSYVLASFIGGLIM-VKFGRMLSNKL 120 (129)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 36888988887765554 45777666543
No 115
>COG1301 GltP Na+/H+-dicarboxylate symporters [Energy production and conversion]
Probab=20.93 E-value=7.3e+02 Score=24.00 Aligned_cols=60 Identities=10% Similarity=0.118 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhhHHHHHHhcccCChhHHhhhh----hHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 026344 41 HSLNNLVFYVFNPALIGSNLAETITYQSLISLW----FMPVNILLSFLIGSALAWILIKITRTP 100 (240)
Q Consensus 41 ~~LsklVf~V~lPaLiF~~la~~it~~~l~~~~----~i~v~~ll~~llg~~lg~ll~ri~r~p 100 (240)
+..-++.-.+..|-.+++-+..--+.++.+... ...++..++..++.++|.+++.++++-
T Consensus 40 ~~Fi~Likmii~PlVf~tlv~gIa~~~~~k~~gr~g~ktl~yf~~tt~~A~~iGl~~~~~~~Pg 103 (415)
T COG1301 40 DIFIKLIKMIIIPLVFFTLVLGIASLGDLKKLGRLGGKTLIYFLVTTTLAIAIGLVVANVLQPG 103 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344455555666666655443332444444433 334455677778888888888888754
No 116
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=20.77 E-value=2.4e+02 Score=26.71 Aligned_cols=52 Identities=27% Similarity=0.496 Sum_probs=34.7
Q ss_pred HHHhhHHHHHHhcccCChhHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHhcCCC
Q 026344 49 YVFNPALIGSNLAETITYQSLISLWFMPVN-ILLSFLIGSALAWILIKITRTPP 101 (240)
Q Consensus 49 ~V~lPaLiF~~la~~it~~~l~~~~~i~v~-~ll~~llg~~lg~ll~ri~r~p~ 101 (240)
.+.+=|.+-.++..+ ..+++++.|+..+. .+++.+++..+||+..|.-+.|+
T Consensus 64 q~ilG~~ig~~~t~s-~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~ 116 (352)
T COG3180 64 QVILGIMIGASLTPS-VLDTLKSNWPIVLVVLLLTLLSSILLGWLLKRFSILPG 116 (352)
T ss_pred HHHHHHHHhhhcCHH-HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 355555555555555 56677776766554 46777888899999888775553
No 117
>PF06899 WzyE: WzyE protein; InterPro: IPR010691 This family consists of several WzyE proteins, which appear to be specific to Enterobacteria. Members of this family are described as putative ECA polymerases this has been found to be incorrect []. The function of this family is unknown.; GO: 0016021 integral to membrane
Probab=20.46 E-value=3.1e+02 Score=26.79 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=27.8
Q ss_pred ccCCCChhHHHHHHHHHHHHHhhHHHHHHhcccCChh
Q 026344 31 RIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQ 67 (240)
Q Consensus 31 r~gil~~~~~~~LsklVf~V~lPaLiF~~la~~it~~ 67 (240)
...+++.+..-..-|--||.++||++..-..++ +..
T Consensus 144 Ysqifs~~v~gvAlkrffYffiPAmLvvyfL~~-~k~ 179 (448)
T PF06899_consen 144 YSQIFSSDVSGVALKRFFYFFIPAMLVVYFLKQ-TKR 179 (448)
T ss_pred HhHHHhhccccHHHHHHHHHHHHHHHHhheecc-chH
Confidence 445677776667778889999999999888887 444
No 118
>COG1294 AppB Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
Probab=20.44 E-value=7.3e+02 Score=23.43 Aligned_cols=32 Identities=6% Similarity=-0.097 Sum_probs=21.5
Q ss_pred hccCCCChhHHHHHHHHHHHHHhhHHHHHHhc
Q 026344 30 DRIDLLGHSVTHSLNNLVFYVFNPALIGSNLA 61 (240)
Q Consensus 30 ~r~gil~~~~~~~LsklVf~V~lPaLiF~~la 61 (240)
|-.|-+.+++++...+.......+.+++.-.+
T Consensus 190 kT~g~l~~rA~~~a~~~~~~~~~~~~~~~~~~ 221 (346)
T COG1294 190 KTEGALQERARKLARIAALLTLVGFLLFGVWV 221 (346)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888877776666655555555333
No 119
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=20.24 E-value=85 Score=30.19 Aligned_cols=37 Identities=24% Similarity=0.548 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccee
Q 026344 72 LWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVI 108 (240)
Q Consensus 72 ~~~i~v~~ll~~llg~~lg~ll~ri~r~p~~~rg~~i 108 (240)
++...+..++.+++-+++=|++.++++.|.+.++++.
T Consensus 41 l~~lv~~~ii~lvv~~~l~~~l~~v~~~~~~~~~w~~ 77 (400)
T COG3071 41 LTTLVIFLIIALVVLYLLEWLLRRVLRTPAHTRGWFS 77 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444555667777888889999999999987776643
Done!