Query 026344
Match_columns 240
No_of_seqs 188 out of 664
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 11:24:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026344.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026344hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 96.2 0.043 1.5E-06 49.5 11.4 49 78-127 233-281 (332)
2 3zux_A Transporter, ASBTNM; tr 49.8 1.3E+02 0.0046 26.3 10.9 55 49-104 46-104 (332)
3 4ev6_A Magnesium transport pro 25.2 78 0.0027 27.7 4.8 19 47-65 285-304 (339)
4 2iub_A CORA, divalent cation t 12.6 77 0.0026 28.0 1.6 19 47-65 309-328 (363)
5 1q1s_A Large T antigen; import 11.3 59 0.002 18.3 0.2 13 211-223 2-14 (26)
6 2bg9_B Acetylcholine receptor 10.9 7.8E+02 0.027 21.4 8.2 17 12-28 217-233 (370)
7 1vf5_F Protein PET M; photosyn 10.3 3.1E+02 0.01 16.4 3.2 21 77-97 10-30 (35)
8 1v54_G Cytochrome C oxidase po 9.6 1.7E+02 0.0057 21.0 2.3 23 40-62 13-35 (85)
9 2j5d_A BNIP3 TM, BCL2/adenovir 9.6 2.7E+02 0.0092 17.6 2.9 13 48-60 17-29 (45)
10 1waz_A MERF; protein structure 9.4 1.6E+02 0.0054 18.8 1.8 16 18-36 6-21 (46)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=96.18 E-value=0.043 Score=49.47 Aligned_cols=49 Identities=22% Similarity=0.131 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCccceeeeeccCCchhhHHHHHHhh
Q 026344 78 NILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAV 127 (240)
Q Consensus 78 ~~ll~~llg~~lg~ll~ri~r~p~~~rg~~i~a~~f~N~~~Lpl~ii~aL 127 (240)
..++..++++++||.++|.++.+++.+..+...|+..|+ .+++++..+.
T Consensus 233 ~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs-~lai~lA~~~ 281 (332)
T 3zux_A 233 VVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNS-GLAAALAAAH 281 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccH-HHHHHHHHHH
Confidence 445667889999999999999988877666666788898 5888887664
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=49.78 E-value=1.3e+02 Score=26.30 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=35.3
Q ss_pred HHHhhHHHHHHhcccCChhHHhh----hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 026344 49 YVFNPALIGSNLAETITYQSLIS----LWFMPVNILLSFLIGSALAWILIKITRTPPHLQ 104 (240)
Q Consensus 49 ~V~lPaLiF~~la~~it~~~l~~----~~~i~v~~ll~~llg~~lg~ll~ri~r~p~~~r 104 (240)
..+++.++|..-.+ ++.+++.+ ++...+..++.+++.-+++|.+++.+..++...
T Consensus 46 ~~~l~~~mf~~G~~-l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l~~~~~ 104 (332)
T 3zux_A 46 PWLLGIIMFGMGLT-LKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIA 104 (332)
T ss_dssp HHHHHHHHHHHHHH-CCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHH
Confidence 35666666665554 47777763 344444456677777788888888876665443
No 3
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=25.23 E-value=78 Score=27.67 Aligned_cols=19 Identities=11% Similarity=0.156 Sum_probs=14.8
Q ss_pred HHHHHhhHHHHHHhcc-cCC
Q 026344 47 VFYVFNPALIGSNLAE-TIT 65 (240)
Q Consensus 47 Vf~V~lPaLiF~~la~-~it 65 (240)
+--+|+|..++.++.. ++.
T Consensus 285 it~IflP~T~IaGiyGMNf~ 304 (339)
T 4ev6_A 285 VTTIFAVPMWITGIYGMNFS 304 (339)
T ss_dssp HHHHSSHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHhhccCcCC
Confidence 3458899999999988 654
No 4
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=12.64 E-value=77 Score=28.05 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=13.0
Q ss_pred HHHHHhhHHHHHHhcc-cCC
Q 026344 47 VFYVFNPALIGSNLAE-TIT 65 (240)
Q Consensus 47 Vf~V~lPaLiF~~la~-~it 65 (240)
+--+|+|..++.++.. ++.
T Consensus 309 it~IflP~T~IaGiyGMNf~ 328 (363)
T 2iub_A 309 IATIFMPLTFIAGIYGMNFE 328 (363)
T ss_dssp HHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHHHhhhcccCC
Confidence 3458999999998887 554
No 5
>1q1s_A Large T antigen; importin alpha/karyopherin alpha, nuclear localisation sequence (NLS) recognition, phosphorylation; 2.30A {Synthetic} PDB: 1q1t_A
Probab=11.26 E-value=59 Score=18.30 Aligned_cols=13 Identities=31% Similarity=0.376 Sum_probs=8.7
Q ss_pred CCCCCCCChhHHH
Q 026344 211 SSDRRSPDDSQIQ 223 (240)
Q Consensus 211 ~~~~~~~~~~~~~ 223 (240)
.+|.+++-|||.+
T Consensus 2 ~sdde~~ads~~s 14 (26)
T 1q1s_A 2 GSDDEAAADAQHA 14 (26)
T ss_pred ccccccccccccc
Confidence 4566677777765
No 6
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=10.85 E-value=7.8e+02 Score=21.39 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 026344 12 MPILKVLLVTALGLVLA 28 (240)
Q Consensus 12 ~~Vl~V~lii~vGy~la 28 (240)
.|.+-+.++..+++++-
T Consensus 217 iP~~liv~ls~~sFwlp 233 (370)
T 2bg9_B 217 VPCILISILAILVFYLP 233 (370)
T ss_dssp HHHHHHHHHHHHHHHST
T ss_pred chHHHHHHHHhheEEcc
Confidence 34444455555666554
No 7
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=10.30 E-value=3.1e+02 Score=16.43 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 026344 77 VNILLSFLIGSALAWILIKIT 97 (240)
Q Consensus 77 v~~ll~~llg~~lg~ll~ri~ 97 (240)
......+++|..+|+++.|+-
T Consensus 10 ~i~~~LvLvGla~Gf~LLkiq 30 (35)
T 1vf5_F 10 LLSFGLIFVGWGLGVLLLKIQ 30 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhheee
Confidence 334455677888888876643
No 8
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=9.61 E-value=1.7e+02 Score=21.00 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHhcc
Q 026344 40 THSLNNLVFYVFNPALIGSNLAE 62 (240)
Q Consensus 40 ~~~LsklVf~V~lPaLiF~~la~ 62 (240)
.+.=-++.+.+++||++...+-.
T Consensus 13 ~~~Wkkis~~va~P~v~l~~~n~ 35 (85)
T 1v54_G 13 ARTWRFLTFGLALPSVALCTLNS 35 (85)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677788899887766543
No 9
>2j5d_A BNIP3 TM, BCL2/adenovirus E1B 19 kDa protein-interacting protein 3; membrane protein, mitochondrion, transmembrane, transmembrane domain, membrane; NMR {Homo sapiens} PDB: 2ka1_A 2ka2_A
Probab=9.56 E-value=2.7e+02 Score=17.64 Aligned_cols=13 Identities=46% Similarity=0.662 Sum_probs=8.0
Q ss_pred HHHHhhHHHHHHh
Q 026344 48 FYVFNPALIGSNL 60 (240)
Q Consensus 48 f~V~lPaLiF~~l 60 (240)
.++++|.++.+.+
T Consensus 17 lk~~~psll~shi 29 (45)
T 2j5d_A 17 LKVFLPSLLLSHL 29 (45)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHH
Confidence 3466777766554
No 10
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=9.44 E-value=1.6e+02 Score=18.77 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhhhccCCCC
Q 026344 18 LLVTALGLVLAIDRIDLLG 36 (240)
Q Consensus 18 ~lii~vGy~la~~r~gil~ 36 (240)
+++.++|. .+ -.|++|
T Consensus 6 iL~g~vGL-sa--~vgyLD 21 (46)
T 1waz_A 6 ILLGVVGL-SA--LTGYLD 21 (46)
T ss_dssp HHHHHHHH-HH--CCSCCC
T ss_pred hhHHHhhH-HH--HHHHHH
Confidence 34455553 34 677777
Done!