Query 026344
Match_columns 240
No_of_seqs 188 out of 664
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 11:24:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026344.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026344hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 17.8 36 0.0026 21.0 2.4 24 40-64 6-30 (64)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 12.5 99 0.0072 16.2 2.8 20 144-163 2-21 (30)
3 d1v54g_ f.23.2.1 (G:) Mitochon 12.0 71 0.0052 21.3 2.7 20 41-60 14-33 (84)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 7.3 4.5E+02 0.033 19.7 11.6 12 98-109 371-382 (447)
5 d1oeda_ f.36.1.1 (A:) Acetylch 6.9 3.7E+02 0.027 19.4 5.7 19 10-28 8-26 (227)
6 d2vv5a3 f.34.1.1 (A:27-112) Me 5.4 3.5E+02 0.026 16.5 8.6 27 34-60 34-60 (86)
7 d1jb0f_ f.23.16.1 (F:) Subunit 4.9 1.9E+02 0.014 20.9 2.4 43 125-168 40-86 (141)
8 d1oedc_ f.36.1.1 (C:) Acetylch 4.7 4.8E+02 0.035 18.8 5.1 19 10-28 8-26 (260)
9 d2r6gg1 f.58.1.1 (G:7-296) Mal 4.4 4.5E+02 0.033 19.5 4.8 18 78-95 89-106 (290)
10 d2r6gf2 f.58.1.1 (F:261-504) M 4.3 3.9E+02 0.028 19.5 4.2 31 77-107 26-57 (244)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=17.77 E-value=36 Score=20.98 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHhcc-cC
Q 026344 40 THSLNNLVFYVFNPALIGSNLAE-TI 64 (240)
Q Consensus 40 ~~~LsklVf~V~lPaLiF~~la~-~i 64 (240)
.+.|+- +--+++|.-+.+++.. ++
T Consensus 6 mk~lT~-it~iflP~t~i~gifGMN~ 30 (64)
T d2iuba2 6 MKVLTI-IATIFMPLTFIAGIYGMNF 30 (64)
T ss_dssp HHHHHH-HHHHHHHHHHHTTSCC---
T ss_pred HHHHHH-HHHHHHHHHHHHhhhccCC
Confidence 344444 3458999999888887 44
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.50 E-value=99 Score=16.18 Aligned_cols=20 Identities=10% Similarity=0.218 Sum_probs=13.4
Q ss_pred hhhHHHHHHHHHhhHHHHHH
Q 026344 144 YGKAYASLSMAVGAIYIWTY 163 (240)
Q Consensus 144 ~g~aYi~l~~~~~~i~~WT~ 163 (240)
..++|++++.-.-.++++.+
T Consensus 2 e~i~yv~ifac~i~lfffai 21 (30)
T d2axtt1 2 ETITYVFIFACIIALFFFAI 21 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehHHHHHHHHHHHHHHH
Confidence 35788888776656666554
No 3
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.02 E-value=71 Score=21.25 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhhHHHHHHh
Q 026344 41 HSLNNLVFYVFNPALIGSNL 60 (240)
Q Consensus 41 ~~LsklVf~V~lPaLiF~~l 60 (240)
+.--++.+.+++||++...+
T Consensus 14 ~lWkkis~~va~P~i~l~~~ 33 (84)
T d1v54g_ 14 RTWRFLTFGLALPSVALCTL 33 (84)
T ss_dssp HHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445666666666665443
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=7.27 E-value=4.5e+02 Score=19.72 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=7.2
Q ss_pred cCCCCCccceee
Q 026344 98 RTPPHLQGLVIG 109 (240)
Q Consensus 98 r~p~~~rg~~i~ 109 (240)
..|++.|+...+
T Consensus 371 ~~p~~~~g~~~g 382 (447)
T d1pw4a_ 371 LAPKKAAGTAAG 382 (447)
T ss_dssp TSCTTHHHHHHH
T ss_pred HcCHHHHHHHHH
Confidence 356677776443
No 5
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=6.95 E-value=3.7e+02 Score=19.40 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 026344 10 ALMPILKVLLVTALGLVLA 28 (240)
Q Consensus 10 al~~Vl~V~lii~vGy~la 28 (240)
-+.|.+-+.++..+|+++-
T Consensus 8 li~P~~li~~ls~~~F~lp 26 (227)
T d1oeda_ 8 VIIPCLLFSFLTGLVFYLP 26 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHheec
Confidence 3455556666777777765
No 6
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=5.37 E-value=3.5e+02 Score=16.55 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=16.1
Q ss_pred CCChhHHHHHHHHHHHHHhhHHHHHHh
Q 026344 34 LLGHSVTHSLNNLVFYVFNPALIGSNL 60 (240)
Q Consensus 34 il~~~~~~~LsklVf~V~lPaLiF~~l 60 (240)
-.|+...+.+++++.++..=..++..+
T Consensus 34 ~~~~~~~~~i~~~~~~~i~~i~~~~~L 60 (86)
T d2vv5a3 34 KIDATVADFLSALVRYGIIAFTLIAAL 60 (86)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777666555544444444
No 7
>d1jb0f_ f.23.16.1 (F:) Subunit III of photosystem I reaction centre, PsaF {Synechococcus elongatus [TaxId: 32046]}
Probab=4.91 E-value=1.9e+02 Score=20.87 Aligned_cols=43 Identities=21% Similarity=0.334 Sum_probs=24.4
Q ss_pred HhhhhcCCCCC----CCcchhhchhhHHHHHHHHHhhHHHHHHHHHHH
Q 026344 125 PAVCEESNSPF----GDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVM 168 (240)
Q Consensus 125 ~aL~~~~~~~F----G~~~~~~~~g~aYi~l~~~~~~i~~WT~G~~ll 168 (240)
++||+++|.|. |+.+.+.+--++-++|-|+.+ .+-|.==-+++
T Consensus 40 ~aLCG~DGLPHLIvdG~~~HaGef~iPg~lFLYIAG-wIGWaGR~YL~ 86 (141)
T d1jb0f_ 40 QALCGEDGLPHLVVDGRLSRAGDFLIPSVLFLYIAG-WIGWVGRAYLI 86 (141)
T ss_dssp TSEECTTSSBCBCCSSCGGGTTTTHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HhccCCCCCceeecCCCcccchhhhHHHHHHHHHhh-hhhhhhHHHHH
Confidence 46999999875 444444445566555555443 44565334444
No 8
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=4.66 E-value=4.8e+02 Score=18.81 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 026344 10 ALMPILKVLLVTALGLVLA 28 (240)
Q Consensus 10 al~~Vl~V~lii~vGy~la 28 (240)
-+.|.+-+.++..+|+++-
T Consensus 8 ~~~P~~~~~~l~~~~f~lp 26 (260)
T d1oedc_ 8 FITPCVLISFLASLAFYLP 26 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHeeeC
Confidence 3445555666777788775
No 9
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=4.38 E-value=4.5e+02 Score=19.50 Aligned_cols=18 Identities=6% Similarity=0.169 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026344 78 NILLSFLIGSALAWILIK 95 (240)
Q Consensus 78 ~~ll~~llg~~lg~ll~r 95 (240)
..+++.++|..+++.+.|
T Consensus 89 ~~~~~~~ig~~~a~~l~r 106 (290)
T d2r6gg1 89 SAIGIVALSTTCAYAFAR 106 (290)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHH
Confidence 345555666666665544
No 10
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.27 E-value=3.9e+02 Score=19.47 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCCCCccce
Q 026344 77 VNILLSFLIGSALAWILIKITR-TPPHLQGLV 107 (240)
Q Consensus 77 v~~ll~~llg~~lg~ll~ri~r-~p~~~rg~~ 107 (240)
+.+++..+++..+|+.++..+. .+.+.|+.+
T Consensus 26 ~~~~~~~~~~~~~~~~lA~~l~~~~~~~~~~~ 57 (244)
T d2r6gf2 26 VFSLITVFLTVAVGMVLACLVQWEALRGKAVY 57 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcchhHHHH
Confidence 3445556666666666665553 333344443
Done!