BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026345
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YGP|A Chain A, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site.
pdb|1YGP|B Chain B, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site
Length = 879
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 121/226 (53%), Gaps = 45/226 (19%)
Query: 54 ASCFLDSLATLNYPAWDMDL-----------------DTNMACLNNSS-LKMVRKKLQK- 94
A+CF+DS+AT PAW L +T LN+ + ++ R ++Q
Sbjct: 170 AACFVDSMATEGIPAWGYGLRYEYGIFAQKIIDGYQVETPDYWLNSGNPWEIERNEVQIP 229
Query: 95 ----------------------VGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDF 132
+GGE V+ VAYD P+PG+KT NLRLW + E F
Sbjct: 230 VTFYGYVDRPEGGKTTLSASQWIGGERVLAVAYDFPVPGFKTSNVNNLRLWQARPTTE-F 288
Query: 133 DLHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYE 192
DL+ FN GD+ + A E I VLYP D + K LRLKQQY C+AS+ DI+ R++
Sbjct: 289 DLNKFNNGDYKNSVAQQQRAESITAVLYPNDNFAQGKELRLKQQYFWCAASLHDILRRFK 348
Query: 193 GRLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
+ P W FP++VA+Q+NDTHPTL I +L R+L+D++ L W++
Sbjct: 349 -KSKRP--WTEFPDQVAIQLNDTHPTLAIVELQRVLVDLEKLDWHE 391
>pdb|3NC4|A Chain A, The Binding Of Beta-D-Glucopyranosyl-Thiosemicarbazone
Derivatives To Glycogen Phosphorylase: A New Class Of
Inhibitors
Length = 841
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 41/224 (18%)
Query: 54 ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
A+CFLDS+ATL A+ + N
Sbjct: 139 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLP 198
Query: 83 ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
++ + + V + V+ + YD P+PGY+ +RLWS K A DF+L FN
Sbjct: 199 VHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 257
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG-RLG- 196
G + +A E I VLYP D + K LRLKQ+Y + +A++QDII R++ + G
Sbjct: 258 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 317
Query: 197 -EPV--NWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
+PV N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L W+
Sbjct: 318 RDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWD 361
>pdb|2G9Q|A Chain A, The Crystal Structure Of The Glycogen Phosphorylase B- 1ab
Complex
pdb|2G9R|A Chain A, The Crystal Structure Of Glycogen Phosphorylase B In
Complex With (3r,
4r,5r)-5-Hydroxymethyl-1-(3-Phenylpropyl)-Piperidine-3,
4-Diol
pdb|2G9U|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex
With (3r,
4r,5r)-5-Hydroxymethyl-1-(3-Phenylpropyl)-Piperidine-3,
4-Diol And Phosphate
pdb|2G9V|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex
With (3r, 4r,5r)-5-Hydroxymethylpiperidine-3,4-Diol And
Phosphate
pdb|2OFF|A Chain A, The Crystal Structure Of Glycogen Phosphorylase B In
Complex With A Potent Allosteric Inhibitor
pdb|2QN1|A Chain A, Glycogen Phosphorylase B In Complex With Asiatic Acid
pdb|2QN2|A Chain A, Glycogen Phosphorylase B In Complex With Maslinic Acid
pdb|2QLM|A Chain A, Glycogen Phosphorylase In Complex With Fn67
pdb|2QLN|A Chain A, Glycogen Phosphorylase B In Complex With
N-4-Phenylbenzoyl- N'-Beta-D-Glucopyranosyl Urea
pdb|2QN3|A Chain A, Glycogen Phosphorylase In Complex With
N-4-Chlorobenzoyl-N- Beta-D-Glucopyranosyl Urea
pdb|2QNB|A Chain A, Glycogen Phosphorylase B In Complex With
N-Benzoyl-N'-Beta- D-Glucopyranosyl Urea
pdb|2QRM|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(4-
Nitrophenyl)-Spiro[1,5-Anhydro-D-Glucitol-1,
5'-Isoxazoline]
pdb|2QRP|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(2-
Naphthyl)-Spiro[1,5-Anhydro-D-Glucitol-1,5'-Isoxazoline]
pdb|2QRQ|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(4-
Methylphenyl)-Spiro[1,5-Anhydro-D-Glucitol-1,5'-
Isoxazoline]
pdb|2QRG|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(4-
Methoxyphenyl)-Spiro[1,5-Anhydro-D-Glucitol-1,5'-
Isoxazoline]
pdb|2QRH|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-
Phenylspiro[1,5-Anhydro-D-Glucitol-1,5'-Isoxazoline]
pdb|3BCR|A Chain A, Glycogen Phosphorylase B In Complex With Azt
pdb|3BCS|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Uracil
pdb|3BCU|A Chain A, Glucogen Phosphorylase Complex With Thymidine
pdb|3BD6|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Ribofuranosyl)
Cyanuric Acid
pdb|3E3L|A Chain A, The R-state Glycogen Phosphorylase
pdb|3E3L|B Chain B, The R-state Glycogen Phosphorylase
pdb|3E3L|C Chain C, The R-state Glycogen Phosphorylase
pdb|3E3L|D Chain D, The R-state Glycogen Phosphorylase
pdb|3CUT|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With N-(-D-Glucopyranosyl)-N'-(2-Naphthyl)oxamide
pdb|3CUU|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With N-(-D-Glucopyranosyl)-N'-(2-Naphthyl)oxamides
pdb|3CUV|A Chain A, Tracking Structure Activity Relationships Of Glycogen
Phosphorylase Inhibitors: Synthesis, Kinetic And
Crystallographic Evaluation Of Analogues Of N-(-D-
Glucopyranosyl)-N'-Oxamides
pdb|3CUW|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With N-(-D-Glucopyranosyl)-N'-(2-Naphthyl)oxamides
pdb|3E3N|A Chain A, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|B Chain B, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|C Chain C, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|D Chain D, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|E Chain E, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|F Chain F, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|G Chain G, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|H Chain H, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3EBO|A Chain A, Glycogen Phosphorylase B/chrysin Complex
pdb|3EBP|A Chain A, Glycogen Phosphorylase B/flavopiridol Complex
pdb|3G2H|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazoles In Complex With Glycogen
Phosphorylase
pdb|3G2I|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazole
pdb|3G2J|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazoles In Complex With Glycogen
Phosphorylase
pdb|3G2K|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazole
pdb|3G2L|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazoles In Complex With Glycogen
Phosphorylase
pdb|3G2N|A Chain A, Crystal Structure Of N-Acylglucosylamine With Glycogen
Phosphorylase
pdb|3MQF|A Chain A, Glycogen Phosphorylase Complexed With
4-Fluorobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MRT|A Chain A, Glycogen Phosphorylase Complexed With
4-Pyridinecarboxaldehyde-4- (Beta-D-Glucopyranosyl)
Thiosemicarbazone
pdb|3MRV|A Chain A, Glycogen Phosphorylase Complexed With
3-Hydroxybenzaldehyde-4-(Beta-D- Glucopyranosyl)
Thiosemicarbazone
pdb|3MRX|A Chain A, Glycogen Phosphorylase Complexed With
4-Methoxybenzaldehyde-4-(2,3,4,
6-Tetra-O-Acetyl-Beta-D-Glucopyranosyl)-
Thiosemicarbazone
pdb|3MS2|A Chain A, Glycogen Phosphorylase Complexed With
4-Methylbenzaldehyde-4-(Beta-D- Glucopyranosyl)
Thiosemicarbazone
pdb|3MS4|A Chain A, Glycogen Phosphorylase Complexed With
4-Trifluoromethylbenzaldehyde-4-
(Beta-D-Glucopyranosyl)-Thiosemicarbazone
pdb|3MS7|A Chain A, Glycogen Phosphorylase Complexed With
2-Chlorobenzaldehyde-4-(2,3,4,6-
Tetra-O-Acetyl-Beta-D-Glucopyranosyl) Thiosemicarbazone
pdb|3MT7|A Chain A, Glycogen Phosphorylase Complexed With
4-Bromobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MT8|A Chain A, Glycogen Phosphorylase Complexed With
4-Chlorobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MT9|A Chain A, Glycogen Phosphorylase Complexed With
4-Nitrobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MTA|A Chain A, Glycogen Phosphorylase Complexed With
3-Bromobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MTB|A Chain A, Glycogen Phosphorylase Complexed With
3-Chlorobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MTD|A Chain A, Glycogen Phosphorylase Complexed With
4-Hydroxybenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MSC|A Chain A, Glycogen Phosphorylase Complexed With
2-Nitrobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3NP7|A Chain A, Glycogen Phosphorylase Complexed With
2,5-Dihydroxy-3-(Beta-D- Glucopyranosyl)-Chlorobenzene
And 2,5-Dihydroxy-4-(Beta-D-
Glucopyranosyl)-Chlorobenzene
pdb|3NP9|A Chain A, Glycogen Phosphorylase Complexed With
3-(Beta-D-Glucopyranosyl)-2-
Hydroxy-5-Methoxy-Chlorobenzene
pdb|3NPA|A Chain A, Glycogen Phosphorylase Complexed With
2,5-Dihydroxy-4-(Beta-D- Glucopyranosyl)-Bromo-Benzene
pdb|3S0J|A Chain A, The Crystal Structure Of Glycogen Phosphorylase B In
Complex With 2,5-
Dihydroxy-4-(Beta-D-Glucopyranosyl)-Chlorobenzene
pdb|3SYM|A Chain A, Glycogen Phosphorylase B In Complex With 3
-C-(Hydroxymethyl)-Beta-D- Glucopyranonucleoside Of
5-Fluorouracil
pdb|3SYR|A Chain A, Glycogen Phosphorylase B In Complex With
Beta-D-Glucopyranonucleoside 5-Fluorouracil
pdb|3T3D|A Chain A, Glycogen Phosphorylase B In Complex With Glcu
pdb|3T3E|A Chain A, Glycogen Phosphorylase B In Complex With Glcclu
pdb|3T3G|A Chain A, Glycogen Phosphorylase B In Complex With Glcbru
pdb|3T3H|A Chain A, Glycogen Phosphorylase B In Complex With Glciu
pdb|3T3I|A Chain A, Glycogen Phosphorylase B In Complex With Glccf3u
Length = 842
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 41/224 (18%)
Query: 54 ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
A+CFLDS+ATL A+ + N
Sbjct: 140 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLP 199
Query: 83 ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
++ + + V + V+ + YD P+PGY+ +RLWS K A DF+L FN
Sbjct: 200 VHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 258
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG-RLG- 196
G + +A E I VLYP D + K LRLKQ+Y + +A++QDII R++ + G
Sbjct: 259 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 318
Query: 197 -EPV--NWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
+PV N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L W+
Sbjct: 319 RDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWD 362
>pdb|1Z6P|A Chain A, Glycogen Phosphorylase Amp Site Inhibitor Complex
pdb|1Z6Q|A Chain A, Glycogen Phosphorylase With Inhibitor In The Amp Site
pdb|1A8I|A Chain A, Spirohydantoin Inhibitor Of Glycogen Phosphorylase
pdb|2GPN|A Chain A, 100 K Structure Of Glycogen Phosphorylase At 2.0 Angstroms
Resolution
pdb|3E3O|A Chain A, Glycogen Phosphorylase R State-Imp Complex
pdb|3E3O|B Chain B, Glycogen Phosphorylase R State-Imp Complex
pdb|3E3O|C Chain C, Glycogen Phosphorylase R State-Imp Complex
pdb|3E3O|D Chain D, Glycogen Phosphorylase R State-Imp Complex
Length = 842
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 41/224 (18%)
Query: 54 ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
A+CFLDS+ATL A+ + N
Sbjct: 140 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLP 199
Query: 83 ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
++ + + V + V+ + YD P+PGY+ +RLWS K A DF+L FN
Sbjct: 200 VHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 258
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG-RLG- 196
G + +A E I VLYP D + K LRLKQ+Y + +A++QDII R++ + G
Sbjct: 259 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 318
Query: 197 -EPV--NWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
+PV N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L W+
Sbjct: 319 RDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWD 362
>pdb|2PYD|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex
With Glucose At 100 K
pdb|2PYI|A Chain A, Crystal Structure Of Glycogen Phosphorylase In Complex
With Glucosyl Triazoleacetamide
pdb|3L79|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk1 Complex
pdb|3L7A|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk2 Complex
pdb|3L7B|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk3 Complex
pdb|3L7C|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk4 Complex
pdb|3L7D|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk5 Complex
Length = 843
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 41/224 (18%)
Query: 54 ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
A+CFLDS+ATL A+ + N
Sbjct: 141 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLP 200
Query: 83 ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
++ + + V + V+ + YD P+PGY+ +RLWS K A DF+L FN
Sbjct: 201 VHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 259
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG-RLG- 196
G + +A E I VLYP D + K LRLKQ+Y + +A++QDII R++ + G
Sbjct: 260 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 319
Query: 197 -EPV--NWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
+PV N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L W+
Sbjct: 320 RDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWD 363
>pdb|1C8L|A Chain A, Synergistic Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug And Caffeine
pdb|1LWN|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
A In Complex With A Potential Hypoglycaemic Drug At 2.0
A Resolution
pdb|1LWO|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
A In Complex With A Potential Hypoglycaemic Drug At 2.0
A Resolution
pdb|3AMV|A Chain A, Allosteric Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug
pdb|2GPA|A Chain A, Allosteric Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug
Length = 842
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 41/224 (18%)
Query: 54 ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
A+CFLDS+ATL A+ + N
Sbjct: 140 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLP 199
Query: 83 ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
++ + + V + V+ + YD P+PGY+ +RLWS K A DF+L FN
Sbjct: 200 VHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 258
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG-RLG- 196
G + +A E I VLYP D + K LRLKQ+Y + +A++QDII R++ + G
Sbjct: 259 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 318
Query: 197 -EPV--NWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
+PV N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L W+
Sbjct: 319 RDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWD 362
>pdb|1PYG|A Chain A, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|1PYG|B Chain B, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|1PYG|C Chain C, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|1PYG|D Chain D, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|2AMV|A Chain A, The Structure Of Glycogen Phosphorylase B With An Alkyl-
Dihydropyridine-Dicarboxylic Acid
pdb|1E1Y|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1UZU|A Chain A, Glycogen Phosphorylase B In Complex With Indirubin-5'-
Sulphonate
pdb|1XC7|A Chain A, Binding Of Beta-D-Glucopyranosyl Bismethoxyphosphoramidate
To Glycogen Phosphorylase B: Kinetic And
Crystallographic Studies
pdb|1XKX|A Chain A, Kinetic And Crystallographic Studies On
2-(Beta-D-Glucopyranosyl)-5-
Methyl-1,3,4-Oxadiazole,-Benzothiazole,
And-Benzimidazole, Inhibitors Of Muscle Glycogen
Phosphorylase B. Evidence For A New Binding Site.
pdb|1XL0|A Chain A, Kinetic And Crystallographic Studies On
2-(Beta-D-Glucopyranosyl)-5-
Methyl-1,3,4-Oxadiazole,-Benzothiazole,
And-Benzimidazole, Inhibitors Of Muscle Glycogen
Phosphorylase B. Evidence For A New Binding Site.
pdb|1XL1|A Chain A, Kinetic And Crystallographic Studies On
2-(Beta-D-Glucopyranosyl)-5-
Methyl-1,3,4-Oxadiazole,-Benzothiazole,
And-Benzimidazole, Inhibitors Of Muscle Glycogen
Phosphorylase B. Evidence For A New Binding Site.
pdb|1Z62|A Chain A, Indirubin-3'-aminooxy-acetate Inhibits Glycogen
Phosphorylase By Binding At The Inhibitor And The
Allosteric Site. Broad Specificities Of The Two Sites
pdb|2F3P|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
N-(Beta-D- Glucopyranosyl)oxamic Acid Complex
pdb|2F3Q|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
METHYL-N-(Beta-D- Glucopyranosyl)oxamate Complex
pdb|2F3S|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
ETHYL-N- (Beta-D-Glucopyranosyl)oxamate Complex
pdb|2F3U|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
N-(Beta-D- Glucopyranosyl)-N'-Cyclopropyl Oxalamide
Complex
pdb|2FET|A Chain A, Synthesis Of C-D-Glycopyranosyl-Hydroquinones
And-Benzoquinones. Inhibition Of Ptp1b. Inhibition Of
And Binding To Glycogen Phosphorylase In The Crystal
pdb|2FF5|A Chain A, Synthesis Of C-D-Glycopyranosyl-Hydroquinones
And-Benzoquinones. Inhibition Of Ptp1b. Inhibition Of
And Binding To Glycogen Phosphorylase In The Crystal
pdb|1AXR|A Chain A, Cooperativity Between Hydrogen-Bonding And Charge-Dipole
Interactions In The Inhibition Of Beta-Glycosidases By
Azolopyridines: Evidence From A Study With Glycogen
Phosphorylase B
pdb|1GPY|A Chain A, Crystallographic Binding Studies On The Allosteric
Inhibitor Glucose- 6-Phosphate To T State Glycogen
Phosphorylase B
pdb|3BD7|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Thymine
pdb|3BD8|A Chain A, Glucogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Cytosine
pdb|3BDA|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Cyanuric Acid
Length = 842
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 41/224 (18%)
Query: 54 ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
A+CFLDS+ATL A+ + N
Sbjct: 140 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLP 199
Query: 83 ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
++ + + V + V+ + YD P+PGY+ +RLWS K A DF+L FN
Sbjct: 200 VHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 258
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG-RLG- 196
G + +A E I VLYP D + K LRLKQ+Y + +A++QDII R++ + G
Sbjct: 259 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 318
Query: 197 -EPV--NWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
+PV N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L W+
Sbjct: 319 RDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWD 362
>pdb|7GPB|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|7GPB|B Chain B, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|7GPB|C Chain C, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|7GPB|D Chain D, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|9GPB|A Chain A, The Allosteric Transition Of Glycogen Phosphorylase
pdb|9GPB|B Chain B, The Allosteric Transition Of Glycogen Phosphorylase
pdb|9GPB|C Chain C, The Allosteric Transition Of Glycogen Phosphorylase
pdb|9GPB|D Chain D, The Allosteric Transition Of Glycogen Phosphorylase
pdb|1B4D|A Chain A, Amidocarbamate Inhibitor Of Glycogen Phosphorylase
pdb|1BX3|A Chain A, Effects Of Commonly Used Cryoprotectants On Glycogen
Phosphorylase Activity And Structure
pdb|2PRI|A Chain A, Binding Of 2-Deoxy-Glucose-6-Phosphate To Glycogen
Phosphorylase B
pdb|2PRJ|A Chain A, Binding Of N-Acetyl-Beta-D-Glucopyranosylamine To Glycogen
Phosphorylase B
pdb|2SKC|A Chain A, Pyridoxal Phosphorylase B In Complex With Fluorophosphate,
Glucose And Inosine-5'-Monophosphate
pdb|2SKD|A Chain A, Pyridoxal Phosphorylase B In Complex With Phosphate,
Glucose And Inosine-5'-Monophosphate
pdb|2SKE|A Chain A, Pyridoxal Phosphorylase B In Complex With Phosphite,
Glucose And Inosine-5'-monophosphate
pdb|1C8K|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1GFZ|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1GG8|A Chain A, Design Of Inhibitors Of Glycogen Phosphorylase: A Study Of
Alpha-And Beta-C-Glucosides And 1-Thio-Beta-D-Glucose
Compounds
pdb|1FS4|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTQ|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTW|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTY|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU4|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU7|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU8|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1GGN|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1HLF|A Chain A, Binding Of Glucopyranosylidene-Spiro-Thiohydantoin To
Glycogen Phosphorylase B: Kinetic And Crystallographic
Stud
pdb|1H5U|A Chain A, The 1.76 A Resolution Crystal Structure Of Glycogen
Phosphorylase B Complexed With Glucose And Cp320626, A
Potential Antidiabetic Drug
pdb|1K06|A Chain A, Crystallographic Binding Study Of 100 Mm
N-Benzoyl-N'-Beta-D- Glucopyranosyl Urea To Glycogen
Phosphorylase B
pdb|1K08|A Chain A, Crystallographic Binding Study Of 10 Mm
N-Benzoyl-N'-Beta-D- Glucopyranosyl Urea To Glycogen
Phosphorylase B
pdb|1KTI|A Chain A, Binding Of 100 Mm N-Acetyl-N'-Beta-D-Glucopyranosyl Urea
To Glycogen Phosphorylase B: Kinetic And
Crystallographic Studies
pdb|1P29|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Maltopentaose
pdb|1P2B|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Maltoheptaose
pdb|1P2D|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Beta Cyclodextrin
pdb|1P2G|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Gamma Cyclodextrin
pdb|1P4G|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With C-(1- Azido-Alpha-D-Glucopyranosyl)formamide
pdb|1P4H|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With C-(1- Acetamido-alpha-d-glucopyranosyl) Formamide
pdb|1P4J|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With C-(1- Hydroxy-Beta-D-Glucopyranosyl)formamide
pdb|1WUT|A Chain A, Acyl Ureas As Human Liver Glycogen Phosphorylase
Inhibitors For The Treatment Of Type 2 Diabetes
pdb|1WUY|A Chain A, Crystallographic Studies On Acyl Ureas, A New Class Of
Inhibitors Of Glycogen Phosphorylase. Broad Specificity
Of The Allosteric Site
pdb|1WV0|A Chain A, Crystallographic Studies On Acyl Ureas, A New Class Of
Inhibitors Of Glycogen Phosphorylase. Broad Specificity
Of The Allosteric Site
pdb|1WV1|A Chain A, Crystallographic Studies On Acyl Ureas, A New Class Of
Inhibitors Of Glycogenphosphorylase. Broad Specificity
Of The Allosteric Site
pdb|1WW2|A Chain A, Crystallographic Studies On Two Bioisosteric Analogues,
N-Acetyl-Beta- D-Glucopyranosylamine And
N-Trifluoroacetyl-Beta-D- Glucopyranosylamine, Potent
Inhibitors Of Muscle Glycogen Phosphorylase
pdb|1WW3|A Chain A, Crystallographic Studies On Two Bioisosteric Analogues,
N-Acetyl-Beta- D-Glucopyranosylamine And
N-Trifluoroacetyl-Beta-D- Glucopyranosylamine, Potent
Inhibitors Of Muscle Glycogen Phosphorylase
pdb|2IEG|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|2IEG|B Chain B, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|2IEI|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|2IEI|B Chain B, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|1GPB|A Chain A, Glycogen Phosphorylase B: Description Of The Protein
Structure
pdb|2GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|3GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|4GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|5GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|6GPB|A Chain A, Refined Crystal Structure Of The Phosphorylase-Heptulose
2-Phosphate- Oligosaccharide-Amp Complex
pdb|8GPB|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|2QN7|A Chain A, Glycogen Phosphorylase B In Complex With
N-4-Hydroxybenzoyl-N'-4-Beta- D-Glucopyranosyl Urea
pdb|2QN8|A Chain A, Glycogen Phosphorylase B In Complex With
N-4-nitrobenzoyl-n'-beta-d- Glucopyranosyl Urea
pdb|2QN9|A Chain A, Glycogen Phosphorylase In Complex With
N-4-Aminobenzoyl-N'-Beta-D- Glucopyranosyl Urea
Length = 842
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 41/224 (18%)
Query: 54 ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
A+CFLDS+ATL A+ + N
Sbjct: 140 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLP 199
Query: 83 ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
++ + + V + V+ + YD P+PGY+ +RLWS K A DF+L FN
Sbjct: 200 VHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 258
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG-RLG- 196
G + +A E I VLYP D + K LRLKQ+Y + +A++QDII R++ + G
Sbjct: 259 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 318
Query: 197 -EPV--NWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
+PV N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L W+
Sbjct: 319 RDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWD 362
>pdb|1NOI|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|B Chain B, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|C Chain C, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|D Chain D, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOJ|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
State
pdb|1NOK|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
State
Length = 842
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 41/224 (18%)
Query: 54 ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
A+CFLDS+ATL A+ + N
Sbjct: 140 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLP 199
Query: 83 ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
++ + + V + V+ + YD P+PGY+ +RLWS K A DF+L FN
Sbjct: 200 VHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 258
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG-RLG- 196
G + +A E I VLYP D + K LRLKQ+Y + +A++QDII R++ + G
Sbjct: 259 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 318
Query: 197 -EPV--NWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
+PV N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L W+
Sbjct: 319 RDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWD 362
>pdb|1GPA|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|1GPA|B Chain B, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|1GPA|C Chain C, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|1GPA|D Chain D, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
Length = 842
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 41/224 (18%)
Query: 54 ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
A+CFLDS+ATL A+ + N
Sbjct: 140 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLP 199
Query: 83 ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
++ + + V + V+ + YD P+PGY+ +RLWS K A DF+L FN
Sbjct: 200 VHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 258
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG-RLG- 196
G + +A E I VLYP D + K LRLKQ+Y + +A++QDII R++ + G
Sbjct: 259 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 318
Query: 197 -EPV--NWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
+PV N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L W+
Sbjct: 319 RDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWD 362
>pdb|1Z8D|A Chain A, Crystal Structure Of Human Muscle Glycogen Phosphorylase A
With Amp And Glucose
Length = 842
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 41/224 (18%)
Query: 54 ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
A+CFLDS+ATL A+ + N
Sbjct: 141 AACFLDSMATLGLAAYGYGIRYEFGIFNQKISGGWQMEEADDWLRYGNPWEKARPEFTLP 200
Query: 83 ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
++ + + V + V+ + YD P+PGY+ +RLWS K A DF+L FN
Sbjct: 201 VHFYGHVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 259
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG-RLG- 196
G + +A E I VLYP D + K LRLKQ+Y + +A++QDII R++ + G
Sbjct: 260 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 319
Query: 197 -EPV--NWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
+PV N++ FP+KVA+Q+NDTHP+L IP+L+RIL+D++ + W+
Sbjct: 320 RDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRILVDLERMDWD 363
>pdb|1C50|A Chain A, Identification And Structural Characterization Of A Novel
Allosteric Binding Site Of Glycogen Phosphorylase B
Length = 830
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 41/224 (18%)
Query: 54 ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
A+CFLDS+ATL A+ + N
Sbjct: 128 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLP 187
Query: 83 ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
++ + + V + V+ + YD P+PGY+ +RLWS K A DF+L FN
Sbjct: 188 VHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 246
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG-RLG- 196
G + +A E I VLYP D + K LRLKQ+Y + +A++QDII R++ + G
Sbjct: 247 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 306
Query: 197 -EPV--NWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
+PV N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L W+
Sbjct: 307 RDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWD 350
>pdb|1ABB|A Chain A, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
pdb|1ABB|B Chain B, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
pdb|1ABB|C Chain C, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
pdb|1ABB|D Chain D, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
Length = 828
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 41/224 (18%)
Query: 54 ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
A+CFLDS+ATL A+ + N
Sbjct: 131 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLP 190
Query: 83 ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
++ + + V + V+ + YD P+PGY+ +RLWS K A DF+L FN
Sbjct: 191 VHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 249
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG-RLG- 196
G + +A E I VLYP D + K LRLKQ+Y + +A++QDII R++ + G
Sbjct: 250 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 309
Query: 197 -EPV--NWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
+PV N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L W+
Sbjct: 310 RDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWD 353
>pdb|4EJ2|A Chain A, Crystal Structure Of Gpb In Complex With Dk10
pdb|4EKE|A Chain A, Crystal Structure Of Gpb In Complex With Dk11
pdb|4EKY|A Chain A, Crystal Structure Of Gpb In Complex With Dk15
pdb|4EL0|A Chain A, Crystal Structure Of Gpb In Complex With Dk16
pdb|4EL5|A Chain A, Crystal Structure Of Gpb In Complex With Dk12
Length = 825
Score = 131 bits (329), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 41/224 (18%)
Query: 54 ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
A+CFLDS+ATL A+ + N
Sbjct: 129 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLP 188
Query: 83 ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
++ + + V + V+ + YD P+PGY+ +RLWS K A DF+L FN
Sbjct: 189 VHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 247
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG-RLG- 196
G + +A E I VLYP D + K LRLKQ+Y + +A++QDII R++ + G
Sbjct: 248 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 307
Query: 197 -EPV--NWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
+PV N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L W+
Sbjct: 308 RDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWD 351
>pdb|2GJ4|A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In
Complex With Ligand
Length = 824
Score = 131 bits (329), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 41/224 (18%)
Query: 54 ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
A+CFLDS+ATL A+ + N
Sbjct: 129 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLP 188
Query: 83 ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
++ + + V + V+ + YD P+PGY+ +RLWS K A DF+L FN
Sbjct: 189 VHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 247
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG-RLG- 196
G + +A E I VLYP D + K LRLKQ+Y + +A++QDII R++ + G
Sbjct: 248 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 307
Query: 197 -EPV--NWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
+PV N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L W+
Sbjct: 308 RDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWD 351
>pdb|2GM9|A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In
Complex With Thienopyrrole
Length = 825
Score = 131 bits (329), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 41/224 (18%)
Query: 54 ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
A+CFLDS+ATL A+ + N
Sbjct: 129 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLP 188
Query: 83 ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
++ + + V + V+ + YD P+PGY+ +RLWS K A DF+L FN
Sbjct: 189 VHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 247
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG-RLG- 196
G + +A E I VLYP D + K LRLKQ+Y + +A++QDII R++ + G
Sbjct: 248 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 307
Query: 197 -EPV--NWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
+PV N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L W+
Sbjct: 308 RDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWD 351
>pdb|2FFR|A Chain A, Crystallographic Studies On
N-Azido-Beta-D-Glucopyranosylamine, An Inhibitor Of
Glycogen Phosphorylase: Comparison With N-Acetyl-Beta-D-
Glucopyranosylamine
Length = 825
Score = 130 bits (326), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 112/224 (50%), Gaps = 41/224 (18%)
Query: 54 ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
A+CFLDS+ATL A+ + N
Sbjct: 129 AACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLP 188
Query: 83 ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
++ + + V + V+ + YD P+PGY+ +RLWS K A DF+L FN
Sbjct: 189 VHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFN 247
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEG----- 193
G + +A E I VLYP D + K LRLKQ+Y + +A++QDII R++
Sbjct: 248 VGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGC 307
Query: 194 RLGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
R N++ FP+KVA+Q+NDTHP+L IP+L+R+L+D++ L W+
Sbjct: 308 RDPRVTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWD 351
>pdb|1XOI|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Chloroindoloyl Glycine Amide
pdb|1XOI|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Chloroindoloyl Glycine Amide
Length = 846
Score = 127 bits (319), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 109/224 (48%), Gaps = 41/224 (18%)
Query: 54 ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
A+CFLDS+ATL A+ + N
Sbjct: 140 AACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLP 199
Query: 83 ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
++ + + + V+ + YD P+PGY T +RLWS + A DF+L FN
Sbjct: 200 VHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSAR-APNDFNLRDFN 258
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGR---- 194
GD+ +A E I VLYP D + K LRLKQ+Y + +A++QDII R++
Sbjct: 259 VGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKASKFGS 318
Query: 195 -LGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
G ++ FP++VA+Q+NDTHP L IP+L+RI +D++ L W+
Sbjct: 319 TRGAATVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWS 362
>pdb|2ZB2|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcose
And 5-
Chloro-N-[4-(1,
2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide
pdb|2ZB2|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcose
And 5-
Chloro-N-[4-(1,
2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide
Length = 849
Score = 127 bits (318), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 109/224 (48%), Gaps = 41/224 (18%)
Query: 54 ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
A+CFLDS+ATL A+ + N
Sbjct: 143 AACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLP 202
Query: 83 ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
++ + + + V+ + YD P+PGY T +RLWS + A DF+L FN
Sbjct: 203 VHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSAR-APNDFNLRDFN 261
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGR---- 194
GD+ +A E I VLYP D + K LRLKQ+Y + +A++QDII R++
Sbjct: 262 VGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKASKFGS 321
Query: 195 -LGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
G ++ FP++VA+Q+NDTHP L IP+L+RI +D++ L W+
Sbjct: 322 TRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWS 365
>pdb|3DDS|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk261
pdb|3DDS|B Chain B, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk261
pdb|3DDW|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk055
pdb|3DDW|B Chain B, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk055
pdb|3DD1|A Chain A, Crystal Structure Of Glycogen Phophorylase Complexed With
An Anthranilimide Based Inhibitor Gsk254
pdb|3DD1|B Chain B, Crystal Structure Of Glycogen Phophorylase Complexed With
An Anthranilimide Based Inhibitor Gsk254
Length = 848
Score = 127 bits (318), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 109/224 (48%), Gaps = 41/224 (18%)
Query: 54 ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
A+CFLDS+ATL A+ + N
Sbjct: 142 AACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLP 201
Query: 83 ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
++ + + + V+ + YD P+PGY T +RLWS + A DF+L FN
Sbjct: 202 VHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSAR-APNDFNLRDFN 260
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGR---- 194
GD+ +A E I VLYP D + K LRLKQ+Y + +A++QDII R++
Sbjct: 261 VGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKASKFGS 320
Query: 195 -LGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
G ++ FP++VA+Q+NDTHP L IP+L+RI +D++ L W+
Sbjct: 321 TRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWS 364
>pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526, 423
pdb|1EM6|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526, 423
pdb|1EXV|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403, 700
pdb|1EXV|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403, 700
pdb|1L5Q|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403700
pdb|1L5Q|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403700
pdb|1L5R|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Riboflavin, N- Acetyl-Beta-D-Glucopyranosylamine And
Cp-403,700
pdb|1L5R|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Riboflavin, N- Acetyl-Beta-D-Glucopyranosylamine And
Cp-403,700
pdb|1L5S|A Chain A, Human Liver Glycogen Phosphorylase Complexed With Uric
Acid, N-Acetyl- Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L5S|B Chain B, Human Liver Glycogen Phosphorylase Complexed With Uric
Acid, N-Acetyl- Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L7X|A Chain A, Human Liver Glycogen Phosphorylase B Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L7X|B Chain B, Human Liver Glycogen Phosphorylase B Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403,700
Length = 847
Score = 127 bits (318), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 109/224 (48%), Gaps = 41/224 (18%)
Query: 54 ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
A+CFLDS+ATL A+ + N
Sbjct: 141 AACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLP 200
Query: 83 ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
++ + + + V+ + YD P+PGY T +RLWS + A DF+L FN
Sbjct: 201 VHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSAR-APNDFNLRDFN 259
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGR---- 194
GD+ +A E I VLYP D + K LRLKQ+Y + +A++QDII R++
Sbjct: 260 VGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKASKFGS 319
Query: 195 -LGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
G ++ FP++VA+Q+NDTHP L IP+L+RI +D++ L W+
Sbjct: 320 TRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWS 363
>pdb|1FC0|A Chain A, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl-Beta-D- Glucopyranosylamine
pdb|1FC0|B Chain B, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl-Beta-D- Glucopyranosylamine
pdb|2ATI|A Chain A, Glycogen Phosphorylase Inhibitors
pdb|2ATI|B Chain B, Glycogen Phosphorylase Inhibitors
Length = 846
Score = 127 bits (318), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 109/224 (48%), Gaps = 41/224 (18%)
Query: 54 ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
A+CFLDS+ATL A+ + N
Sbjct: 140 AACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLP 199
Query: 83 ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
++ + + + V+ + YD P+PGY T +RLWS + A DF+L FN
Sbjct: 200 VHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSAR-APNDFNLRDFN 258
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGR---- 194
GD+ +A E I VLYP D + K LRLKQ+Y + +A++QDII R++
Sbjct: 259 VGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKASKFGS 318
Query: 195 -LGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
G ++ FP++VA+Q+NDTHP L IP+L+RI +D++ L W+
Sbjct: 319 TRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWS 362
>pdb|2QLL|A Chain A, Human Liver Glycogen Phosphorylase- Gl Complex
Length = 847
Score = 127 bits (318), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 109/224 (48%), Gaps = 41/224 (18%)
Query: 54 ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
A+CFLDS+ATL A+ + N
Sbjct: 141 AACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLP 200
Query: 83 ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
++ + + + V+ + YD P+PGY T +RLWS + A DF+L FN
Sbjct: 201 VHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSAR-APNDFNLRDFN 259
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGR---- 194
GD+ +A E I VLYP D + K LRLKQ+Y + +A++QDII R++
Sbjct: 260 VGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKASKFGS 319
Query: 195 -LGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
G ++ FP++VA+Q+NDTHP L IP+L+RI +D++ L W+
Sbjct: 320 TRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWS 363
>pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Amp
Length = 846
Score = 127 bits (318), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 109/224 (48%), Gaps = 41/224 (18%)
Query: 54 ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
A+CFLDS+ATL A+ + N
Sbjct: 140 AACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLP 199
Query: 83 ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
++ + + + V+ + YD P+PGY T +RLWS + A DF+L FN
Sbjct: 200 VHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSAR-APNDFNLRDFN 258
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGR---- 194
GD+ +A E I VLYP D + K LRLKQ+Y + +A++QDII R++
Sbjct: 259 VGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKASKFGS 318
Query: 195 -LGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
G ++ FP++VA+Q+NDTHP L IP+L+RI +D++ L W+
Sbjct: 319 TRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWS 362
>pdb|3CEH|A Chain A, Human Liver Glycogen Phosphorylase (Tense State) In
Complex With The Allosteric Inhibitor Ave5688
pdb|3CEH|B Chain B, Human Liver Glycogen Phosphorylase (Tense State) In
Complex With The Allosteric Inhibitor Ave5688
pdb|3CEJ|A Chain A, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave2865
pdb|3CEJ|B Chain B, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave2865
pdb|3CEM|A Chain A, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave9423
pdb|3CEM|B Chain B, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave9423
Length = 809
Score = 127 bits (318), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 109/224 (48%), Gaps = 41/224 (18%)
Query: 54 ASCFLDSLATLNYPAWDMDLDTNMACLNN------------------------------- 82
A+CFLDS+ATL A+ + N
Sbjct: 118 AACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLP 177
Query: 83 ----SSLKMVRKKLQKVGGENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFN 138
++ + + + V+ + YD P+PGY T +RLWS + A DF+L FN
Sbjct: 178 VHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSAR-APNDFNLRDFN 236
Query: 139 TGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGR---- 194
GD+ +A E I VLYP D + K LRLKQ+Y + +A++QDII R++
Sbjct: 237 VGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKASKFGS 296
Query: 195 -LGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWN 237
G ++ FP++VA+Q+NDTHP L IP+L+RI +D++ L W+
Sbjct: 297 TRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWS 340
>pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1QM5|B Chain B, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|A Chain A, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|B Chain B, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
Length = 796
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 114/228 (50%), Gaps = 42/228 (18%)
Query: 46 GNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSL--KMVRK------------- 90
GNGGL RLA+CFLDS+AT+ A L+ S + K V
Sbjct: 111 GNGGLGRLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFR 170
Query: 91 -----KLQ-KVGGENVMD-----------VAYDVPIPGYKTKTTLNLRLWSTKVAAEDFD 133
+Q +GG+ D A+D+P+ GY+ LRLW A FD
Sbjct: 171 HNEALDVQVGIGGKVTKDGRWEPEFTITGQAWDLPVVGYRNGVAQPLRLWQA-THAHPFD 229
Query: 134 LHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYE- 192
L FN GD +A N EK+ VLYP D + A K LRL QQY C+ SV DI+ R+
Sbjct: 230 LTKFNDGDFLRAEQQGINAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVADILRRHHL 289
Query: 193 -GR-LGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
GR L E ++E +Q+NDTHPT+ IP+L+R+L+D +SW+D
Sbjct: 290 AGRKLHELADYE------VIQLNDTHPTIAIPELLRVLIDEHQMSWDD 331
>pdb|2ECP|A Chain A, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
pdb|2ECP|B Chain B, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
Length = 796
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 113/228 (49%), Gaps = 42/228 (18%)
Query: 46 GNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSL--KMVRK------------- 90
GNGGL RLA+CFLDS+AT+ A L+ S + K V
Sbjct: 111 GNGGLGRLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFR 170
Query: 91 -----KLQ-KVGGENVMD-----------VAYDVPIPGYKTKTTLNLRLWSTKVAAEDFD 133
+Q +GG D A+D+P+ GY+ LRLW A FD
Sbjct: 171 HNEALDVQVGIGGAVTKDGRWEPEFTITGQAWDLPVVGYRNGVAQPLRLWQA-THAHPFD 229
Query: 134 LHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYE- 192
L FN GD +A N EK+ VLYP D + A K LRL QQY C+ SV DI+ R+
Sbjct: 230 LTKFNDGDFLRAEQQGINAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVADILRRHHL 289
Query: 193 -GR-LGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
GR L E ++E +Q+NDTHPT+ IP+L+R+L+D +SW+D
Sbjct: 290 AGRELHELADYE------VIQLNDTHPTIAIPELLRVLIDEHQMSWDD 331
>pdb|1L5V|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5V|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5W|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L5W|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L6I|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|1L6I|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|2ASV|A Chain A, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2ASV|B Chain B, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2AV6|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AV6|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AZD|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
pdb|2AZD|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
Length = 796
Score = 123 bits (309), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 112/228 (49%), Gaps = 42/228 (18%)
Query: 46 GNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSL--KMVRK------------- 90
GNGGL RLA+CFLDS+AT+ A L+ S + K V
Sbjct: 111 GNGGLGRLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFR 170
Query: 91 -----KLQ-KVGGENVMD-----------VAYDVPIPGYKTKTTLNLRLWSTKVAAEDFD 133
+Q +GG+ D A+D+P+ GY+ LRLW A FD
Sbjct: 171 HNEALDVQVGIGGKVTKDGRWEPEFTITGQAWDLPVVGYRNGVAQPLRLWQA-THAHPFD 229
Query: 134 LHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYE- 192
L FN GD +A N EK+ VLYP D K LRL QQY C+ SV DI+ R+
Sbjct: 230 LTKFNDGDFLRAEQQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACSVADILRRHHL 289
Query: 193 -GR-LGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
GR L E ++E +Q+NDTHPT+ IP+L+R+L+D +SW+D
Sbjct: 290 AGRKLHELADYE------VIQLNDTHPTIAIPELLRVLIDEHQMSWDD 331
>pdb|1AHP|A Chain A, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
pdb|1AHP|B Chain B, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
Length = 797
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 112/228 (49%), Gaps = 42/228 (18%)
Query: 46 GNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNSSL--KMVRK------------- 90
G GGL RLA+CFLDS+AT+ A L+ S + K V
Sbjct: 112 GAGGLGRLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFR 171
Query: 91 -----KLQ-KVGGENVMD-----------VAYDVPIPGYKTKTTLNLRLWSTKVAAEDFD 133
+Q +GG D A+D+P+ GY+ LRLW A FD
Sbjct: 172 HNEALDVQVGIGGAVTKDGRWEPEFTITGQAWDLPVVGYRNGVAQPLRLWQA-THAHPFD 230
Query: 134 LHAFNTGDHAKAYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYE- 192
L FN GD +A N EK+ VLYP D + A K LRL QQY C+ SV DI+ R+
Sbjct: 231 LTKFNDGDFLRAEQQGINAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVADILRRHHL 290
Query: 193 -GR-LGEPVNWENFPEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
GR L E ++E +Q+NDTHPT+ IP+L+R+L+D +SW+D
Sbjct: 291 AGRELHELADYE------VIQLNDTHPTIAIPELLRVLIDEHQMSWDD 332
>pdb|2C4M|A Chain A, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|B Chain B, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|C Chain C, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|D Chain D, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control
Length = 796
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 100/214 (46%), Gaps = 25/214 (11%)
Query: 46 GNGGLERLASCFLDSLATLNYPAWDMDLDTNMACLNNS------------------SLKM 87
GNGGL RLA+CFLDS T +YP L S +
Sbjct: 112 GNGGLGRLAACFLDSAVTQDYPVTGYGLLYRFGLFRQSFNEGFQVEKPDPWREEEYPFTI 171
Query: 88 VRKKLQKVGGENVMD---VAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAK 144
R Q V + M + YD+PI GY T LRLW + E+FD AFN
Sbjct: 172 RRASDQLVVCFDDMKTRAIPYDMPITGYGTHNVGTLRLWKAE-PWEEFDYDAFNAQRFTD 230
Query: 145 AYAAITNVEKICYVLYPGDEYIARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWENF 204
A V IC VLYP D K LR++QQY SAS+Q +I + L + NF
Sbjct: 231 AIIERERVSDICRVLYPNDTTYEGKKLRVRQQYFFTSASLQAMI---QDHLAHHKDLSNF 287
Query: 205 PEKVAVQMNDTHPTLCIPDLIRILMDVKGLSWND 238
E +VQ+NDTHP L IP+L+R+LMD + W +
Sbjct: 288 AEFHSVQLNDTHPVLAIPELMRLLMDEHDMGWEE 321
>pdb|1H4U|A Chain A, Domain G2 Of Mouse Nidogen-1
Length = 265
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 113 KTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNV-EKICYVLYP 161
K K + + V E+ DLH++ +H ++Y AI+ + E + Y L P
Sbjct: 41 KVKGRIFVGSSQVPVVFENTDLHSYVVMNHGRSYTAISTIPETVGYSLLP 90
>pdb|3G88|A Chain A, T. Thermophilus 16s Rrna G527 Methyltransferase In Complex
With Adomet In Space Group P61
pdb|3G88|B Chain B, T. Thermophilus 16s Rrna G527 Methyltransferase In Complex
With Adomet In Space Group P61
pdb|3G89|A Chain A, T. Thermophilus 16s Rrna G527 Methyltransferase In Complex
With Adomet And Amp In Space Group P61
pdb|3G89|B Chain B, T. Thermophilus 16s Rrna G527 Methyltransferase In Complex
With Adomet And Amp In Space Group P61
pdb|3G8A|A Chain A, T. Thermophilus 16s Rrna G527 Methyltransferase In Complex
With Adohcy In Space Group P61
pdb|3G8A|B Chain B, T. Thermophilus 16s Rrna G527 Methyltransferase In Complex
With Adohcy In Space Group P61
pdb|3G8A|C Chain C, T. Thermophilus 16s Rrna G527 Methyltransferase In Complex
With Adohcy In Space Group P61
pdb|3G8A|D Chain D, T. Thermophilus 16s Rrna G527 Methyltransferase In Complex
With Adohcy In Space Group P61
pdb|3G8A|E Chain E, T. Thermophilus 16s Rrna G527 Methyltransferase In Complex
With Adohcy In Space Group P61
pdb|3G8A|F Chain F, T. Thermophilus 16s Rrna G527 Methyltransferase In Complex
With Adohcy In Space Group P61
pdb|3G8B|A Chain A, T. Thermophilus 16s Rrna G527 Methyltransferase In Complex
With Adomet In Space Group I222
pdb|3G8B|B Chain B, T. Thermophilus 16s Rrna G527 Methyltransferase In Complex
With Adomet In Space Group I222
Length = 249
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 57 FLDSLATLNYPAWD-----MDLDTNMACLNNSSLKMVRKKLQKV 95
FLDSL L P W +DL T A LK+VR +L+ V
Sbjct: 66 FLDSLTLLRLPLWQGPLRVLDLGTG-AGFPGLPLKIVRPELELV 108
>pdb|1GL4|A Chain A, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 285
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 113 KTKTTLNLRLWSTKVAAEDFDLHAFNTGDHAKAYAAITNV-EKICYVLYP 161
K K + + V E+ DLH++ +H ++Y AI+ + E + Y L P
Sbjct: 55 KVKGRIFVGSSQVPVVFENTDLHSYVVMNHGRSYTAISTIPETVGYSLLP 104
>pdb|1D3E|1 Chain 1, Cryo-Em Structure Of Human Rhinovirus 16 (Hrv16) Complexed
With A Two-Domain Fragment Of Its Cellular Receptor,
Intercellular Adhesion Molecule-1 (D1d2-Icam-1).
Implications For Virus-Receptor Interactions. Alpha
Carbons Only
Length = 285
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 57/147 (38%), Gaps = 13/147 (8%)
Query: 82 NSSLKMVRKKLQKVG--GENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNT 139
+S + MV K G G VM Y VP PG TT + W + A F H
Sbjct: 119 DSEITMVPSVAAKDGHIGHIVMQYMY-VP-PGAPIPTTRDDYAWQSGTNASVFWQHGQPF 176
Query: 140 GDHAKAYAAITNVEKICYVLYPGDEYIAR-KTLRLKQQYTLCSASVQD-------IIVRY 191
+ + +I + + Y Y GD Y +R T+ TLCS V ++ R
Sbjct: 177 PRFSLPFLSIASAYYMFYDGYDGDTYKSRYGTVVTNDMGTLCSRIVTSEQLHKVKVVTRI 236
Query: 192 EGRLGEPVNWENFPEKVAVQMNDTHPT 218
+ W P + AVQ + TH T
Sbjct: 237 YHKAKHTKAWCPRPPR-AVQYSHTHTT 262
>pdb|1AYN|1 Chain 1, Human Rhinovirus 16 Coat Protein
pdb|1AYM|1 Chain 1, Human Rhinovirus 16 Coat Protein At High Resolution
pdb|1QJU|1 Chain 1, Human Rhinovirus 16 Coat Protein In Complex With Antiviral
Compound Vp61209
pdb|1QJX|1 Chain 1, Human Rhinovirus 16 Coat Protein In Complex With Antiviral
Compound Win68934
pdb|1QJY|1 Chain 1, Human Rhinovirus 16 Coat Protein In Complex With Antiviral
Compound Vp65099
pdb|1C8M|1 Chain 1, Refined Crystal Structure Of Human Rhinovirus 16 Complexed
With Vp63843 (Pleconaril), An Anti-Picornaviral Drug
Currently In Clinical Trials
pdb|1NCR|A Chain A, The Structure Of Rhinovirus 16 When Complexed With
Pleconaril, An Antiviral Compound
pdb|1ND2|A Chain A, The Structure Of Rhinovirus 16
pdb|1ND3|A Chain A, The Structure Of Hrv16, When Complexed With Pleconaril, An
Antiviral Compound
Length = 285
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 57/147 (38%), Gaps = 13/147 (8%)
Query: 82 NSSLKMVRKKLQKVG--GENVMDVAYDVPIPGYKTKTTLNLRLWSTKVAAEDFDLHAFNT 139
+S + MV K G G VM Y VP PG TT + W + A F H
Sbjct: 119 DSEITMVPSVAAKDGHIGHIVMQYMY-VP-PGAPIPTTRDDYAWQSGTNASVFWQHGQPF 176
Query: 140 GDHAKAYAAITNVEKICYVLYPGDEYIAR-KTLRLKQQYTLCSASVQD-------IIVRY 191
+ + +I + + Y Y GD Y +R T+ TLCS V ++ R
Sbjct: 177 PRFSLPFLSIASAYYMFYDGYDGDTYKSRYGTVVTNDMGTLCSRIVTSEQLHKVKVVTRI 236
Query: 192 EGRLGEPVNWENFPEKVAVQMNDTHPT 218
+ W P + AVQ + TH T
Sbjct: 237 YHKAKHTKAWCPRPPR-AVQYSHTHTT 262
>pdb|3A8I|A Chain A, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex
pdb|3A8I|B Chain B, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex
pdb|3A8I|C Chain C, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex
pdb|3A8I|D Chain D, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex
pdb|3A8J|A Chain A, Crystal Structure Of Et-Ehred Complex
pdb|3A8J|B Chain B, Crystal Structure Of Et-Ehred Complex
pdb|3A8J|C Chain C, Crystal Structure Of Et-Ehred Complex
pdb|3A8J|D Chain D, Crystal Structure Of Et-Ehred Complex
Length = 364
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 167 ARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWE----NFPEKVAVQMNDTHPTLCIP 222
AR TLRL+ L + + I +G + WE +F + A+++ H T
Sbjct: 223 ARDTLRLEAGMNLYGQEMDETISPLAANMGWTIAWEPADRDFIGREALEVQREHGT---E 279
Query: 223 DLIRILMDVKGLSWNDI 239
L+ ++M KG+ N++
Sbjct: 280 KLVGLVMTEKGVLRNEL 296
>pdb|3A8K|A Chain A, Crystal Structure Of Etd97n-Ehred Complex
pdb|3A8K|B Chain B, Crystal Structure Of Etd97n-Ehred Complex
pdb|3A8K|C Chain C, Crystal Structure Of Etd97n-Ehred Complex
pdb|3A8K|D Chain D, Crystal Structure Of Etd97n-Ehred Complex
Length = 364
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 167 ARKTLRLKQQYTLCSASVQDIIVRYEGRLGEPVNWE----NFPEKVAVQMNDTHPTLCIP 222
AR TLRL+ L + + I +G + WE +F + A+++ H T
Sbjct: 223 ARDTLRLEAGMNLYGQEMDETISPLAANMGWTIAWEPADRDFIGREALEVQREHGT---E 279
Query: 223 DLIRILMDVKGLSWNDI 239
L+ ++M KG+ N++
Sbjct: 280 KLVGLVMTEKGVLRNEL 296
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,221,615
Number of Sequences: 62578
Number of extensions: 278722
Number of successful extensions: 589
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 469
Number of HSP's gapped (non-prelim): 67
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)